Query 000888
Match_columns 1237
No_of_seqs 649 out of 3932
Neff 5.7
Searched_HMMs 46136
Date Tue Apr 2 00:34:55 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 2.4E-67 5.2E-72 608.6 42.2 563 419-1228 181-794 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 2.6E-60 5.6E-65 559.3 32.5 405 676-1208 265-681 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 2.9E-55 6.3E-60 490.7 29.7 380 843-1228 4-386 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 7.4E-52 1.6E-56 520.4 41.9 539 423-1224 173-731 (733)
5 KOG0736 Peroxisome assembly fa 100.0 1.5E-49 3.3E-54 470.4 37.2 435 690-1208 489-939 (953)
6 KOG0738 AAA+-type ATPase [Post 100.0 2.7E-45 5.9E-50 409.4 25.3 284 928-1224 205-490 (491)
7 COG0464 SpoVK ATPases of the A 100.0 3.3E-44 7.1E-49 433.2 36.7 455 631-1206 19-488 (494)
8 COG1222 RPT1 ATP-dependent 26S 100.0 7.5E-44 1.6E-48 396.8 24.7 248 928-1204 144-395 (406)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 1.7E-41 3.6E-46 394.3 25.2 299 928-1229 183-521 (802)
10 KOG0735 AAA+-type ATPase [Post 100.0 8.6E-40 1.9E-44 384.5 33.2 439 632-1163 433-893 (952)
11 KOG0739 AAA+-type ATPase [Post 100.0 6.4E-41 1.4E-45 363.3 18.5 297 924-1226 122-439 (439)
12 KOG0741 AAA+-type ATPase [Post 100.0 1.3E-40 2.8E-45 381.3 21.0 428 632-1153 258-721 (744)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 3.6E-36 7.9E-41 359.6 38.0 411 676-1222 67-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 1.4E-37 3.1E-42 356.8 21.0 271 926-1227 295-567 (752)
15 KOG0740 AAA+-type ATPase [Post 100.0 3.7E-35 8E-40 339.8 18.7 280 929-1226 147-427 (428)
16 KOG0652 26S proteasome regulat 100.0 3E-34 6.6E-39 306.6 19.1 245 929-1202 165-413 (424)
17 KOG0728 26S proteasome regulat 100.0 1.4E-33 3.1E-38 300.1 21.6 250 930-1208 142-395 (404)
18 KOG0727 26S proteasome regulat 100.0 1.3E-33 2.9E-38 300.6 21.4 248 926-1202 146-397 (408)
19 KOG0731 AAA+-type ATPase conta 100.0 2E-33 4.2E-38 341.5 23.8 252 927-1208 303-560 (774)
20 COG0542 clpA ATP-binding subun 100.0 5.6E-33 1.2E-37 340.0 26.3 382 676-1120 247-707 (786)
21 KOG0726 26S proteasome regulat 100.0 4.6E-34 1E-38 309.2 14.7 244 930-1202 180-427 (440)
22 COG1223 Predicted ATPase (AAA+ 100.0 2.3E-33 5E-38 300.5 19.2 242 931-1205 117-359 (368)
23 PTZ00454 26S protease regulato 100.0 1.4E-32 3.1E-37 322.4 25.6 247 929-1204 139-389 (398)
24 KOG0732 AAA+-type ATPase conta 100.0 1.4E-33 3.1E-38 349.6 11.6 411 617-1120 288-728 (1080)
25 PRK03992 proteasome-activating 100.0 1.3E-31 2.7E-36 314.8 25.2 251 929-1208 125-379 (389)
26 KOG0729 26S proteasome regulat 100.0 3.1E-32 6.7E-37 291.9 16.7 248 929-1205 171-422 (435)
27 COG0465 HflB ATP-dependent Zn 100.0 1.1E-31 2.3E-36 322.1 19.5 255 929-1213 144-402 (596)
28 TIGR01241 FtsH_fam ATP-depende 100.0 7.7E-31 1.7E-35 317.2 25.5 270 927-1226 47-320 (495)
29 PTZ00361 26 proteosome regulat 100.0 8.1E-31 1.8E-35 309.7 23.5 246 930-1204 178-427 (438)
30 KOG0730 AAA+-type ATPase [Post 100.0 1.8E-31 3.9E-36 315.9 17.4 263 931-1230 181-445 (693)
31 TIGR02639 ClpA ATP-dependent C 100.0 4E-29 8.7E-34 314.5 31.9 390 673-1158 259-714 (731)
32 TIGR01242 26Sp45 26S proteasom 100.0 6.7E-29 1.5E-33 289.5 24.3 244 929-1201 116-363 (364)
33 PRK11034 clpA ATP-dependent Cl 100.0 1.3E-28 2.8E-33 307.5 26.4 435 630-1158 207-718 (758)
34 TIGR03689 pup_AAA proteasome A 100.0 1.8E-28 4E-33 293.4 25.7 276 928-1229 175-505 (512)
35 CHL00176 ftsH cell division pr 100.0 1.1E-28 2.3E-33 303.7 24.0 268 928-1226 176-447 (638)
36 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-28 3.4E-33 309.7 22.1 289 930-1229 173-463 (733)
37 TIGR03345 VI_ClpV1 type VI sec 100.0 5.7E-27 1.2E-31 297.5 34.9 416 673-1158 264-833 (852)
38 PRK10733 hflB ATP-dependent me 100.0 8.7E-28 1.9E-32 298.0 24.9 268 928-1225 145-416 (644)
39 KOG0651 26S proteasome regulat 100.0 2.2E-28 4.8E-33 268.3 13.6 243 930-1201 127-373 (388)
40 CHL00095 clpC Clp protease ATP 100.0 2.7E-26 5.9E-31 292.1 32.6 416 673-1158 256-784 (821)
41 TIGR03346 chaperone_ClpB ATP-d 99.9 1.1E-25 2.5E-30 287.2 34.6 417 673-1158 250-828 (852)
42 KOG0732 AAA+-type ATPase conta 99.9 2.9E-27 6.3E-32 293.9 19.3 266 929-1208 259-532 (1080)
43 CHL00206 ycf2 Ycf2; Provisiona 99.9 7.6E-27 1.6E-31 299.3 21.0 205 968-1205 1628-1881(2281)
44 PRK10865 protein disaggregatio 99.9 9.9E-26 2.1E-30 287.0 29.5 379 673-1120 255-781 (857)
45 KOG0741 AAA+-type ATPase [Post 99.9 4.8E-27 1E-31 270.4 10.4 263 932-1208 216-497 (744)
46 PLN00020 ribulose bisphosphate 99.9 4.5E-25 9.7E-30 250.8 24.3 189 967-1159 145-355 (413)
47 KOG0737 AAA+-type ATPase [Post 99.9 4.8E-26 1E-30 256.4 15.9 233 408-856 72-316 (386)
48 COG1222 RPT1 ATP-dependent 26S 99.9 6.5E-24 1.4E-28 237.9 13.1 235 421-893 144-392 (406)
49 KOG0736 Peroxisome assembly fa 99.9 5.8E-21 1.3E-25 228.6 18.1 250 971-1229 432-682 (953)
50 KOG0738 AAA+-type ATPase [Post 99.8 4.7E-20 1E-24 207.9 13.6 249 421-893 205-469 (491)
51 CHL00181 cbbX CbbX; Provisiona 99.8 7E-19 1.5E-23 199.3 18.6 237 935-1196 23-281 (287)
52 TIGR02880 cbbX_cfxQ probable R 99.8 2.6E-18 5.6E-23 194.5 18.0 214 936-1160 23-258 (284)
53 KOG0735 AAA+-type ATPase [Post 99.8 1.4E-18 3E-23 206.6 16.0 237 971-1229 432-677 (952)
54 KOG0742 AAA+-type ATPase [Post 99.8 2.7E-18 5.9E-23 193.8 17.3 206 933-1149 353-586 (630)
55 TIGR02881 spore_V_K stage V sp 99.8 3.3E-18 7.1E-23 191.3 17.9 216 933-1160 4-243 (261)
56 KOG0744 AAA+-type ATPase [Post 99.8 1.6E-18 3.4E-23 191.9 12.5 194 925-1120 132-342 (423)
57 PF00004 AAA: ATPase family as 99.8 3.9E-18 8.5E-23 168.4 12.1 130 973-1104 1-132 (132)
58 KOG0739 AAA+-type ATPase [Post 99.7 8.5E-18 1.8E-22 184.1 13.1 136 662-849 201-347 (439)
59 CHL00195 ycf46 Ycf46; Provisio 99.7 1.4E-17 3.1E-22 200.2 15.6 228 403-849 206-442 (489)
60 KOG0740 AAA+-type ATPase [Post 99.7 1.1E-17 2.4E-22 195.1 12.8 243 423-891 148-402 (428)
61 PTZ00454 26S protease regulato 99.7 1.4E-17 2.9E-22 196.4 12.9 236 420-893 137-386 (398)
62 KOG0734 AAA+-type ATPase conta 99.7 2.5E-17 5.3E-22 191.2 13.8 241 413-891 289-539 (752)
63 KOG1051 Chaperone HSP104 and r 99.7 2.9E-16 6.3E-21 196.0 23.3 324 689-1084 278-710 (898)
64 PRK03992 proteasome-activating 99.7 2.6E-17 5.6E-22 194.1 13.3 236 421-894 124-373 (389)
65 COG1223 Predicted ATPase (AAA+ 99.7 2.8E-16 6E-21 169.9 14.7 148 673-891 195-353 (368)
66 COG0464 SpoVK ATPases of the A 99.7 1.4E-15 3.1E-20 184.6 20.1 247 954-1228 3-251 (494)
67 PTZ00361 26 proteosome regulat 99.7 1.8E-16 3.9E-21 188.3 11.1 151 673-893 261-424 (438)
68 KOG0728 26S proteasome regulat 99.6 5.9E-16 1.3E-20 166.3 12.1 150 674-893 226-388 (404)
69 PF05496 RuvB_N: Holliday junc 99.6 5.2E-16 1.1E-20 167.8 11.9 188 932-1149 21-223 (233)
70 KOG0743 AAA+-type ATPase [Post 99.6 2.7E-15 5.8E-20 174.2 17.9 220 932-1162 198-430 (457)
71 TIGR01241 FtsH_fam ATP-depende 99.6 3.2E-16 6.8E-21 190.4 10.7 213 418-847 45-271 (495)
72 CHL00206 ycf2 Ycf2; Provisiona 99.6 4.7E-16 1E-20 201.5 12.4 136 668-849 1712-1855(2281)
73 TIGR02639 ClpA ATP-dependent C 99.6 5.8E-15 1.3E-19 186.9 19.9 185 933-1141 180-386 (731)
74 PRK00080 ruvB Holliday junctio 99.6 3.9E-14 8.5E-19 163.6 25.0 199 932-1153 22-228 (328)
75 TIGR00635 ruvB Holliday juncti 99.6 1.9E-14 4.1E-19 163.9 21.9 197 933-1152 2-206 (305)
76 COG2256 MGS1 ATPase related to 99.6 1.1E-14 2.4E-19 166.7 19.4 179 932-1152 21-217 (436)
77 KOG0727 26S proteasome regulat 99.6 7.8E-16 1.7E-20 165.5 9.4 215 420-849 147-374 (408)
78 TIGR03689 pup_AAA proteasome A 99.6 5.5E-15 1.2E-19 178.1 16.7 133 662-846 261-405 (512)
79 KOG0731 AAA+-type ATPase conta 99.6 1.3E-15 2.8E-20 187.0 11.1 237 417-891 300-551 (774)
80 PLN00020 ribulose bisphosphate 99.6 8.3E-14 1.8E-18 159.6 21.1 103 665-812 186-313 (413)
81 TIGR00763 lon ATP-dependent pr 99.6 2.4E-14 5.2E-19 182.3 18.5 205 936-1158 321-557 (775)
82 CHL00176 ftsH cell division pr 99.6 5.9E-15 1.3E-19 182.8 10.7 213 417-846 172-398 (638)
83 KOG0726 26S proteasome regulat 99.6 9.1E-16 2E-20 167.8 2.8 186 632-891 221-424 (440)
84 TIGR01242 26Sp45 26S proteasom 99.6 1.2E-14 2.5E-19 170.2 11.6 234 421-891 115-361 (364)
85 PRK12323 DNA polymerase III su 99.5 1.1E-13 2.3E-18 168.6 19.1 184 932-1152 13-230 (700)
86 COG2255 RuvB Holliday junction 99.5 1.4E-13 3E-18 151.6 18.0 188 932-1141 23-218 (332)
87 PRK14956 DNA polymerase III su 99.5 1.5E-13 3.3E-18 163.8 19.8 183 932-1151 15-226 (484)
88 PRK07003 DNA polymerase III su 99.5 1.8E-13 3.9E-18 168.3 19.3 184 932-1152 13-225 (830)
89 KOG0615 Serine/threonine prote 99.5 1.6E-14 3.5E-19 164.8 7.5 109 122-230 41-160 (475)
90 PRK11034 clpA ATP-dependent Cl 99.5 1.9E-13 4.1E-18 172.1 17.4 196 934-1153 185-407 (758)
91 PRK10733 hflB ATP-dependent me 99.5 3.7E-14 8.1E-19 177.0 10.7 125 676-848 232-369 (644)
92 KOG2004 Mitochondrial ATP-depe 99.5 2.7E-13 5.8E-18 162.7 16.9 172 935-1119 411-597 (906)
93 PRK14960 DNA polymerase III su 99.5 9.4E-13 2E-17 160.8 22.0 184 932-1152 12-224 (702)
94 PRK14962 DNA polymerase III su 99.5 1.3E-12 2.8E-17 157.5 22.6 182 932-1150 11-221 (472)
95 PRK14961 DNA polymerase III su 99.5 2.2E-12 4.7E-17 151.3 23.3 184 932-1152 13-225 (363)
96 TIGR02902 spore_lonB ATP-depen 99.5 4.8E-13 1E-17 163.7 18.2 220 932-1199 62-330 (531)
97 KOG0729 26S proteasome regulat 99.5 1.3E-14 2.8E-19 157.2 3.5 170 632-851 213-398 (435)
98 PRK14949 DNA polymerase III su 99.5 1E-12 2.3E-17 164.4 20.7 184 932-1152 13-225 (944)
99 TIGR03345 VI_ClpV1 type VI sec 99.5 8.8E-13 1.9E-17 168.8 20.7 197 932-1153 184-408 (852)
100 PRK14958 DNA polymerase III su 99.5 1.4E-12 3E-17 158.6 21.3 185 932-1153 13-226 (509)
101 PRK05342 clpX ATP-dependent pr 99.5 8.7E-13 1.9E-17 156.4 18.6 222 937-1158 73-381 (412)
102 PRK07994 DNA polymerase III su 99.5 1.2E-12 2.6E-17 161.6 20.3 184 932-1152 13-225 (647)
103 PRK14964 DNA polymerase III su 99.5 3.1E-12 6.7E-17 154.0 21.8 186 931-1153 9-223 (491)
104 PRK08691 DNA polymerase III su 99.4 4.1E-12 8.9E-17 156.5 22.3 186 931-1153 12-226 (709)
105 PRK13342 recombination factor 99.4 4.2E-12 9.2E-17 151.3 21.9 180 932-1152 9-201 (413)
106 KOG0652 26S proteasome regulat 99.4 1.3E-13 2.8E-18 149.2 7.6 192 632-895 207-414 (424)
107 TIGR02928 orc1/cdc6 family rep 99.4 4.8E-12 1E-16 147.6 21.2 201 935-1156 15-255 (365)
108 PRK10865 protein disaggregatio 99.4 8.8E-13 1.9E-17 169.2 16.4 164 933-1121 176-357 (857)
109 PRK06645 DNA polymerase III su 99.4 4.3E-12 9.3E-17 153.7 21.1 186 931-1153 17-235 (507)
110 PRK00149 dnaA chromosomal repl 99.4 3.1E-12 6.7E-17 154.0 19.6 168 971-1152 149-327 (450)
111 KOG2028 ATPase related to the 99.4 3.2E-12 7E-17 143.8 18.1 206 932-1201 135-368 (554)
112 PRK07940 DNA polymerase III su 99.4 3.5E-12 7.6E-17 150.6 18.7 187 933-1149 3-216 (394)
113 PRK04195 replication factor C 99.4 4.1E-12 8.8E-17 154.2 19.8 186 931-1147 10-203 (482)
114 TIGR03346 chaperone_ClpB ATP-d 99.4 2.7E-12 5.9E-17 165.1 19.0 184 933-1141 171-377 (852)
115 CHL00095 clpC Clp protease ATP 99.4 2.5E-12 5.5E-17 164.9 18.6 184 933-1141 177-382 (821)
116 PRK14951 DNA polymerase III su 99.4 6.6E-12 1.4E-16 154.8 21.3 184 932-1152 13-230 (618)
117 PRK14969 DNA polymerase III su 99.4 7.1E-12 1.5E-16 153.2 21.4 185 932-1153 13-226 (527)
118 TIGR00390 hslU ATP-dependent p 99.4 3E-12 6.4E-17 149.9 17.0 179 936-1114 13-342 (441)
119 PRK00411 cdc6 cell division co 99.4 1.2E-11 2.5E-16 146.0 22.0 225 934-1205 29-286 (394)
120 TIGR00362 DnaA chromosomal rep 99.4 8.7E-12 1.9E-16 148.2 21.1 168 971-1152 137-315 (405)
121 PLN03025 replication factor C 99.4 6.2E-12 1.4E-16 144.9 19.2 181 931-1149 9-202 (319)
122 PRK14957 DNA polymerase III su 99.4 1.2E-11 2.5E-16 151.0 22.2 184 932-1152 13-225 (546)
123 PRK14959 DNA polymerase III su 99.4 1.2E-11 2.6E-16 151.8 22.3 182 931-1149 12-222 (624)
124 KOG0651 26S proteasome regulat 99.4 5.9E-13 1.3E-17 147.7 10.0 131 673-851 210-353 (388)
125 PRK05563 DNA polymerase III su 99.4 1.4E-11 3E-16 151.7 21.8 185 931-1152 12-225 (559)
126 PRK07764 DNA polymerase III su 99.4 8.6E-12 1.9E-16 158.4 19.9 183 931-1150 11-224 (824)
127 TIGR02397 dnaX_nterm DNA polym 99.4 2.8E-11 6.2E-16 140.5 22.4 185 931-1152 10-223 (355)
128 PRK05201 hslU ATP-dependent pr 99.4 4.5E-12 9.8E-17 148.4 15.5 179 936-1115 16-345 (443)
129 TIGR00382 clpX endopeptidase C 99.4 8.2E-12 1.8E-16 147.7 17.8 221 937-1157 79-386 (413)
130 PRK14963 DNA polymerase III su 99.4 1.3E-11 2.9E-16 149.9 19.7 184 931-1151 10-221 (504)
131 PRK12402 replication factor C 99.4 2.5E-11 5.5E-16 139.6 21.2 187 931-1149 11-228 (337)
132 PRK14952 DNA polymerase III su 99.4 1.4E-11 3E-16 151.4 20.0 183 931-1150 9-222 (584)
133 COG0466 Lon ATP-dependent Lon 99.4 8.4E-12 1.8E-16 151.2 17.6 172 935-1118 323-508 (782)
134 PTZ00112 origin recognition co 99.4 3.5E-11 7.6E-16 148.6 22.0 181 935-1137 755-969 (1164)
135 PRK14965 DNA polymerase III su 99.4 2.7E-11 5.9E-16 149.7 21.4 184 932-1152 13-225 (576)
136 PRK05896 DNA polymerase III su 99.4 2.7E-11 5.9E-16 148.1 20.6 183 931-1150 12-223 (605)
137 TIGR03420 DnaA_homol_Hda DnaA 99.3 4.8E-11 1E-15 129.8 20.4 185 932-1153 12-207 (226)
138 PRK08903 DnaA regulatory inact 99.3 7.9E-11 1.7E-15 128.9 21.7 178 931-1150 14-202 (227)
139 PRK06893 DNA replication initi 99.3 3E-11 6.5E-16 133.0 18.4 157 971-1149 40-205 (229)
140 PRK08084 DNA replication initi 99.3 1E-10 2.2E-15 129.4 22.6 183 931-1150 18-212 (235)
141 PRK12422 chromosomal replicati 99.3 4.6E-11 9.9E-16 143.4 21.2 214 971-1223 142-366 (445)
142 KOG0989 Replication factor C, 99.3 1.8E-11 3.9E-16 136.4 16.1 184 931-1145 32-229 (346)
143 PRK14953 DNA polymerase III su 99.3 6.6E-11 1.4E-15 143.4 21.6 185 931-1152 12-225 (486)
144 PHA02544 44 clamp loader, smal 99.3 4.8E-11 1E-15 136.7 19.5 176 931-1138 17-201 (316)
145 PRK06647 DNA polymerase III su 99.3 6.2E-11 1.4E-15 145.7 21.7 185 931-1152 12-225 (563)
146 PRK07133 DNA polymerase III su 99.3 4.2E-11 9.2E-16 148.9 20.3 189 931-1150 14-222 (725)
147 PRK10787 DNA-binding ATP-depen 99.3 1.4E-11 3E-16 156.4 16.4 165 936-1119 323-507 (784)
148 PF00498 FHA: FHA domain; Int 99.3 5.1E-12 1.1E-16 112.7 8.8 67 147-216 1-68 (68)
149 PRK13341 recombination factor 99.3 5.7E-11 1.2E-15 149.4 21.0 180 932-1152 25-222 (725)
150 PRK06305 DNA polymerase III su 99.3 6.7E-11 1.5E-15 142.3 20.7 182 932-1150 14-225 (451)
151 PRK09111 DNA polymerase III su 99.3 7.7E-11 1.7E-15 145.6 21.6 190 932-1152 21-238 (598)
152 PF05673 DUF815: Protein of un 99.3 5.9E-11 1.3E-15 130.4 17.7 189 931-1149 23-243 (249)
153 PRK14086 dnaA chromosomal repl 99.3 9.5E-11 2.1E-15 143.5 21.0 166 971-1151 315-492 (617)
154 PRK14088 dnaA chromosomal repl 99.3 3.2E-11 7E-16 144.7 16.4 167 971-1151 131-309 (440)
155 COG0465 HflB ATP-dependent Zn 99.3 3.8E-12 8.2E-17 154.5 8.3 190 632-893 185-390 (596)
156 PRK08727 hypothetical protein; 99.3 3.7E-10 8E-15 124.8 22.4 146 971-1138 42-196 (233)
157 PRK14970 DNA polymerase III su 99.3 1.6E-10 3.4E-15 135.6 19.9 185 931-1150 13-212 (367)
158 PRK08451 DNA polymerase III su 99.3 1.4E-10 3.1E-15 140.9 19.8 186 931-1153 10-224 (535)
159 PRK00440 rfc replication facto 99.2 3.1E-10 6.7E-15 129.5 20.7 183 932-1152 14-208 (319)
160 PRK14955 DNA polymerase III su 99.2 1.8E-10 3.9E-15 136.8 19.4 182 932-1150 13-231 (397)
161 COG2812 DnaX DNA polymerase II 99.2 3.7E-11 8E-16 144.5 13.5 193 931-1154 12-227 (515)
162 PRK14948 DNA polymerase III su 99.2 2E-10 4.3E-15 142.8 19.5 181 932-1149 13-224 (620)
163 PRK14950 DNA polymerase III su 99.2 3.5E-10 7.5E-15 140.4 21.5 183 931-1150 12-224 (585)
164 CHL00081 chlI Mg-protoporyphyr 99.2 1.6E-10 3.5E-15 134.2 16.7 244 931-1205 13-326 (350)
165 TIGR02640 gas_vesic_GvpN gas v 99.2 2E-10 4.3E-15 129.1 15.8 134 971-1118 22-198 (262)
166 PRK14954 DNA polymerase III su 99.2 5.2E-10 1.1E-14 138.6 20.7 175 931-1141 12-223 (620)
167 PRK14087 dnaA chromosomal repl 99.2 5.7E-10 1.2E-14 134.4 20.0 169 971-1154 142-326 (450)
168 PRK13407 bchI magnesium chelat 99.2 1.6E-10 3.4E-15 133.8 14.5 161 932-1118 5-216 (334)
169 PRK06620 hypothetical protein; 99.2 4.8E-10 1E-14 122.5 17.4 143 971-1150 45-192 (214)
170 PRK05642 DNA replication initi 99.2 5.3E-10 1.1E-14 123.7 17.8 157 971-1150 46-211 (234)
171 TIGR02903 spore_lon_C ATP-depe 99.1 1.6E-09 3.5E-14 135.0 21.4 230 932-1201 151-430 (615)
172 PRK14971 DNA polymerase III su 99.1 2.2E-09 4.8E-14 133.6 22.0 181 932-1149 14-224 (614)
173 cd00060 FHA Forkhead associate 99.1 2.3E-10 5E-15 108.6 9.3 96 128-226 2-101 (102)
174 cd00009 AAA The AAA+ (ATPases 99.1 1E-09 2.2E-14 108.3 14.0 121 971-1103 20-150 (151)
175 COG1474 CDC6 Cdc6-related prot 99.1 2.9E-09 6.2E-14 125.0 19.6 199 936-1158 18-248 (366)
176 COG0593 DnaA ATPase involved i 99.1 5.1E-09 1.1E-13 123.2 21.3 169 970-1153 113-292 (408)
177 PF00308 Bac_DnaA: Bacterial d 99.1 9.5E-10 2.1E-14 120.6 14.2 167 971-1152 35-213 (219)
178 TIGR02030 BchI-ChlI magnesium 99.1 3.1E-09 6.8E-14 123.4 18.0 156 934-1118 3-219 (337)
179 PRK05564 DNA polymerase III su 99.1 5.5E-09 1.2E-13 120.2 19.7 176 932-1144 1-188 (313)
180 PRK09112 DNA polymerase III su 99.1 5.3E-09 1.2E-13 122.2 19.6 188 932-1151 20-244 (351)
181 TIGR01650 PD_CobS cobaltochela 99.0 7.2E-10 1.6E-14 127.2 10.7 142 971-1118 65-233 (327)
182 TIGR02442 Cob-chelat-sub cobal 99.0 1.7E-09 3.7E-14 135.4 14.9 231 934-1204 3-307 (633)
183 PRK09087 hypothetical protein; 99.0 5.8E-09 1.3E-13 115.0 16.5 172 971-1201 45-222 (226)
184 PHA02244 ATPase-like protein 99.0 3.4E-09 7.3E-14 123.0 14.5 134 971-1114 120-269 (383)
185 KOG0991 Replication factor C, 99.0 4.1E-09 9E-14 113.5 13.9 184 932-1148 24-216 (333)
186 PF07724 AAA_2: AAA domain (Cd 99.0 1.6E-09 3.4E-14 114.6 10.6 115 968-1085 1-130 (171)
187 COG2607 Predicted ATPase (AAA+ 99.0 1.8E-08 3.9E-13 109.5 18.6 190 931-1150 56-276 (287)
188 PRK07471 DNA polymerase III su 99.0 9.1E-09 2E-13 120.9 17.5 181 931-1144 15-236 (365)
189 TIGR00678 holB DNA polymerase 99.0 1.2E-08 2.6E-13 108.6 15.5 145 969-1140 13-185 (188)
190 smart00350 MCM minichromosome 98.9 7.1E-09 1.5E-13 126.9 15.4 186 916-1120 193-402 (509)
191 COG0542 clpA ATP-binding subun 98.9 6.7E-09 1.5E-13 129.6 14.5 181 934-1139 169-372 (786)
192 TIGR03015 pepcterm_ATPase puta 98.9 5.7E-08 1.2E-12 108.6 20.6 192 971-1202 44-267 (269)
193 COG1219 ClpX ATP-dependent pro 98.9 8.4E-09 1.8E-13 115.6 13.7 97 971-1067 98-202 (408)
194 PRK07399 DNA polymerase III su 98.9 1.4E-08 3.1E-13 117.0 15.5 180 933-1145 2-220 (314)
195 KOG0745 Putative ATP-dependent 98.9 1.9E-08 4.1E-13 116.3 15.4 73 971-1043 227-305 (564)
196 smart00382 AAA ATPases associa 98.9 8.1E-09 1.8E-13 100.5 10.7 127 971-1105 3-147 (148)
197 PF07728 AAA_5: AAA domain (dy 98.9 9.6E-10 2.1E-14 111.0 4.0 112 972-1096 1-139 (139)
198 PRK05707 DNA polymerase III su 98.9 4.3E-08 9.2E-13 113.8 17.7 154 968-1144 20-201 (328)
199 COG1239 ChlI Mg-chelatase subu 98.9 2.6E-08 5.7E-13 116.2 15.7 168 932-1120 14-234 (423)
200 KOG0744 AAA+-type ATPase [Post 98.9 5.5E-09 1.2E-13 117.1 9.3 227 417-843 131-388 (423)
201 COG1224 TIP49 DNA helicase TIP 98.9 1.3E-07 2.7E-12 107.7 19.9 90 1085-1201 342-432 (450)
202 COG0714 MoxR-like ATPases [Gen 98.9 5.7E-09 1.2E-13 121.0 9.6 142 971-1117 44-202 (329)
203 KOG1969 DNA replication checkp 98.9 3.5E-08 7.5E-13 120.1 16.2 155 971-1145 327-509 (877)
204 TIGR03354 VI_FHA type VI secre 98.9 4E-09 8.7E-14 124.8 8.1 83 138-224 17-103 (396)
205 TIGR02031 BchD-ChlD magnesium 98.8 4.3E-08 9.2E-13 121.9 17.3 211 970-1203 16-260 (589)
206 COG0470 HolB ATPase involved i 98.8 3.7E-08 8E-13 112.6 14.6 146 936-1112 2-175 (325)
207 PF00004 AAA: ATPase family as 98.8 2E-08 4.4E-13 99.2 10.7 64 674-740 43-118 (132)
208 PRK11331 5-methylcytosine-spec 98.8 3.9E-08 8.5E-13 116.9 14.0 122 971-1104 195-357 (459)
209 PRK08058 DNA polymerase III su 98.8 1.3E-07 2.9E-12 109.8 18.0 149 933-1116 3-180 (329)
210 PF01078 Mg_chelatase: Magnesi 98.8 4E-09 8.6E-14 113.9 5.0 46 933-994 1-46 (206)
211 PRK04132 replication factor C 98.8 5.2E-08 1.1E-12 123.9 15.4 161 968-1152 562-736 (846)
212 PF05621 TniB: Bacterial TniB 98.8 2.8E-07 6.1E-12 104.6 19.3 177 971-1158 62-272 (302)
213 TIGR00764 lon_rel lon-related 98.8 7.6E-08 1.7E-12 119.9 16.1 50 932-997 15-64 (608)
214 COG3829 RocR Transcriptional r 98.7 2.7E-08 5.8E-13 118.8 10.4 200 931-1153 241-477 (560)
215 COG1220 HslU ATP-dependent pro 98.7 1.1E-07 2.5E-12 107.3 14.2 85 1030-1115 251-346 (444)
216 PRK13531 regulatory ATPase Rav 98.7 3.1E-07 6.7E-12 110.3 17.9 152 937-1117 22-193 (498)
217 PRK06871 DNA polymerase III su 98.7 6.5E-07 1.4E-11 103.7 19.6 168 939-1144 6-201 (325)
218 PF07726 AAA_3: ATPase family 98.7 6.1E-09 1.3E-13 104.4 2.4 120 972-1096 1-129 (131)
219 TIGR02974 phageshock_pspF psp 98.7 1.3E-07 2.9E-12 109.8 13.2 168 971-1154 23-232 (329)
220 KOG2035 Replication factor C, 98.7 6E-07 1.3E-11 99.5 17.0 183 932-1145 10-227 (351)
221 PF06068 TIP49: TIP49 C-termin 98.7 6E-07 1.3E-11 103.9 17.8 65 933-1006 22-88 (398)
222 PRK07993 DNA polymerase III su 98.7 5.7E-07 1.2E-11 104.7 18.0 153 968-1144 22-202 (334)
223 COG1221 PspF Transcriptional r 98.7 6E-08 1.3E-12 114.0 9.9 200 931-1156 74-310 (403)
224 PRK11608 pspF phage shock prot 98.7 1.4E-07 3.1E-12 109.4 12.6 192 934-1153 5-238 (326)
225 COG2204 AtoC Response regulato 98.6 8.4E-08 1.8E-12 114.6 10.5 202 933-1155 139-374 (464)
226 TIGR00368 Mg chelatase-related 98.6 6.4E-07 1.4E-11 109.2 18.4 146 932-1108 189-394 (499)
227 PRK15424 propionate catabolism 98.6 1.7E-07 3.6E-12 115.1 13.3 194 932-1153 216-463 (538)
228 TIGR00602 rad24 checkpoint pro 98.6 4.6E-07 1E-11 112.8 16.6 193 931-1147 80-324 (637)
229 TIGR02329 propionate_PrpR prop 98.6 1.9E-07 4.2E-12 114.5 12.4 194 932-1153 209-448 (526)
230 TIGR01817 nifA Nif-specific re 98.6 1.5E-07 3.2E-12 116.2 11.2 195 932-1154 193-427 (534)
231 PRK08769 DNA polymerase III su 98.6 1.1E-06 2.4E-11 101.5 17.6 173 939-1146 8-208 (319)
232 KOG1514 Origin recognition com 98.6 4.4E-07 9.5E-12 110.7 14.7 203 972-1206 424-660 (767)
233 PRK05022 anaerobic nitric oxid 98.6 3.1E-07 6.6E-12 112.8 13.0 194 934-1155 186-420 (509)
234 PRK15429 formate hydrogenlyase 98.6 7.3E-07 1.6E-11 113.2 16.0 195 932-1154 373-608 (686)
235 PRK06964 DNA polymerase III su 98.6 8E-07 1.7E-11 103.6 15.0 153 968-1144 19-223 (342)
236 COG3604 FhlA Transcriptional r 98.6 3.2E-07 7E-12 108.6 11.5 201 931-1155 219-456 (550)
237 PRK10820 DNA-binding transcrip 98.5 4.2E-07 9E-12 111.9 13.0 196 931-1154 200-436 (520)
238 PF13177 DNA_pol3_delta2: DNA 98.5 4.1E-07 9E-12 95.4 11.1 133 939-1104 1-160 (162)
239 KOG2227 Pre-initiation complex 98.5 3.6E-06 7.8E-11 99.1 19.6 236 936-1205 151-419 (529)
240 PRK06090 DNA polymerase III su 98.5 2.4E-06 5.2E-11 98.8 18.2 166 939-1144 7-199 (319)
241 PRK11388 DNA-binding transcrip 98.5 9.4E-07 2E-11 111.3 14.8 195 932-1154 322-553 (638)
242 PTZ00111 DNA replication licen 98.5 2.1E-07 4.5E-12 118.0 8.6 184 914-1119 438-658 (915)
243 smart00240 FHA Forkhead associ 98.5 2E-07 4.3E-12 78.5 5.1 50 147-199 1-52 (52)
244 PRK12377 putative replication 98.5 1.1E-06 2.5E-11 98.2 12.1 111 917-1041 56-175 (248)
245 PRK08116 hypothetical protein; 98.4 1.4E-06 3E-11 98.7 11.5 68 971-1040 115-189 (268)
246 KOG0742 AAA+-type ATPase [Post 98.4 9.9E-07 2.1E-11 101.6 9.4 93 676-813 430-531 (630)
247 KOG0482 DNA replication licens 98.4 3.8E-06 8.3E-11 98.9 14.2 224 912-1157 328-591 (721)
248 COG1716 FOG: FHA domain [Signa 98.4 9.4E-07 2E-11 94.1 8.3 75 140-220 84-159 (191)
249 PF00158 Sigma54_activat: Sigm 98.4 3.5E-07 7.6E-12 96.6 5.0 99 971-1084 23-143 (168)
250 TIGR02915 PEP_resp_reg putativ 98.3 1.9E-06 4.1E-11 103.7 10.8 168 971-1154 163-371 (445)
251 smart00763 AAA_PrkA PrkA AAA d 98.3 7.5E-06 1.6E-10 95.6 15.2 62 934-1003 49-118 (361)
252 PRK07952 DNA replication prote 98.3 4.4E-06 9.4E-11 93.4 12.8 111 917-1041 54-174 (244)
253 PLN02927 antheraxanthin epoxid 98.3 1.2E-06 2.6E-11 109.7 9.3 89 136-228 545-647 (668)
254 COG1241 MCM2 Predicted ATPase 98.3 2.4E-06 5.2E-11 106.3 11.6 189 914-1121 274-486 (682)
255 PRK09862 putative ATP-dependen 98.3 7.9E-06 1.7E-10 99.7 15.3 145 933-1108 189-391 (506)
256 PRK13406 bchD magnesium chelat 98.3 5.7E-06 1.2E-10 102.7 14.2 198 970-1202 25-251 (584)
257 PF03215 Rad17: Rad17 cell cyc 98.3 1.3E-05 2.8E-10 98.3 16.9 195 932-1147 16-264 (519)
258 KOG0990 Replication factor C, 98.3 2.6E-06 5.6E-11 96.4 9.9 159 931-1123 37-208 (360)
259 TIGR02881 spore_V_K stage V sp 98.2 7.1E-06 1.5E-10 92.3 12.5 84 691-812 105-193 (261)
260 KOG1942 DNA helicase, TBP-inte 98.2 2E-05 4.3E-10 88.0 15.3 91 1029-1137 296-400 (456)
261 PRK08699 DNA polymerase III su 98.2 7.7E-06 1.7E-10 95.1 12.6 132 968-1116 19-183 (325)
262 COG0606 Predicted ATPase with 98.2 6.9E-07 1.5E-11 105.9 3.9 48 931-994 175-222 (490)
263 KOG0478 DNA replication licens 98.2 5.4E-06 1.2E-10 100.9 11.3 190 913-1119 416-627 (804)
264 PF01637 Arch_ATPase: Archaeal 98.2 3.9E-06 8.5E-11 90.5 8.9 161 971-1141 21-229 (234)
265 PRK13765 ATP-dependent proteas 98.2 1.6E-05 3.5E-10 99.5 14.6 49 931-995 27-75 (637)
266 KOG2680 DNA helicase TIP49, TB 98.2 3.8E-05 8.2E-10 86.1 15.6 91 1085-1202 339-430 (454)
267 PRK10923 glnG nitrogen regulat 98.2 1.2E-05 2.7E-10 97.4 13.0 168 971-1154 162-370 (469)
268 PRK08181 transposase; Validate 98.1 5.7E-06 1.2E-10 93.7 8.9 69 971-1041 107-179 (269)
269 PRK06835 DNA replication prote 98.1 8.4E-06 1.8E-10 94.9 8.6 69 971-1041 184-258 (329)
270 CHL00181 cbbX CbbX; Provisiona 98.1 1.2E-05 2.7E-10 91.9 9.6 133 633-812 62-211 (287)
271 PRK11361 acetoacetate metaboli 98.1 5.4E-05 1.2E-09 91.4 15.3 168 971-1154 167-375 (457)
272 PF13401 AAA_22: AAA domain; P 98.0 2.2E-05 4.8E-10 77.9 9.9 97 971-1082 5-125 (131)
273 PF13173 AAA_14: AAA domain 98.0 1.4E-05 3.1E-10 80.2 7.9 69 971-1041 3-73 (128)
274 PRK08939 primosomal protein Dn 98.0 3.1E-05 6.7E-10 89.4 11.8 70 970-1041 156-229 (306)
275 PRK15115 response regulator Gl 98.0 4.8E-05 1E-09 91.6 13.8 165 971-1154 158-366 (444)
276 COG3456 Predicted component of 98.0 7.4E-06 1.6E-10 95.3 6.0 74 144-226 25-101 (430)
277 TIGR01818 ntrC nitrogen regula 98.0 3.2E-05 7E-10 93.5 11.7 170 971-1153 158-365 (463)
278 PRK05342 clpX ATP-dependent pr 98.0 2.7E-05 5.9E-10 93.2 10.8 85 417-505 59-145 (412)
279 PF14532 Sigma54_activ_2: Sigm 98.0 1.1E-05 2.4E-10 82.1 6.3 57 971-1041 22-81 (138)
280 COG1219 ClpX ATP-dependent pro 98.0 1.3E-05 2.8E-10 90.6 7.2 87 415-505 47-134 (408)
281 KOG0480 DNA replication licens 98.0 1.8E-05 3.9E-10 95.8 8.5 217 912-1152 331-571 (764)
282 TIGR00763 lon ATP-dependent pr 97.9 0.00014 3E-09 93.9 17.1 34 466-501 347-380 (775)
283 PRK06526 transposase; Provisio 97.9 1.1E-05 2.5E-10 90.6 5.8 69 971-1041 99-171 (254)
284 PF01695 IstB_IS21: IstB-like 97.9 1E-05 2.2E-10 86.4 5.1 69 970-1040 47-119 (178)
285 PRK05917 DNA polymerase III su 97.9 0.00014 3.1E-09 83.1 14.3 121 968-1105 17-154 (290)
286 PRK10365 transcriptional regul 97.9 5.2E-05 1.1E-09 91.0 10.4 126 971-1112 163-317 (441)
287 COG1484 DnaC DNA replication p 97.9 2.9E-05 6.3E-10 87.4 7.5 70 970-1041 105-179 (254)
288 PRK06921 hypothetical protein; 97.8 3.2E-05 7E-10 87.6 7.9 67 971-1040 118-188 (266)
289 cd01120 RecA-like_NTPases RecA 97.8 9.4E-05 2E-09 75.1 10.3 71 973-1043 2-99 (165)
290 PF00493 MCM: MCM2/3/5 family 97.8 1.7E-06 3.7E-11 100.8 -3.0 189 913-1121 11-224 (331)
291 PF05729 NACHT: NACHT domain 97.8 0.00012 2.5E-09 75.0 10.9 139 972-1119 2-164 (166)
292 TIGR00382 clpX endopeptidase C 97.8 8.3E-05 1.8E-09 88.9 11.2 84 417-504 65-152 (413)
293 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00013 2.9E-09 81.0 11.9 138 971-1124 33-183 (231)
294 PRK07276 DNA polymerase III su 97.8 0.00063 1.4E-08 78.0 17.6 154 968-1148 22-198 (290)
295 TIGR02880 cbbX_cfxQ probable R 97.8 5.6E-05 1.2E-09 86.4 8.9 137 630-812 58-210 (284)
296 PRK09183 transposase/IS protei 97.8 4.5E-05 9.7E-10 86.1 7.7 70 971-1041 103-176 (259)
297 KOG1970 Checkpoint RAD17-RFC c 97.8 0.0008 1.7E-08 81.2 17.9 163 971-1149 111-314 (634)
298 PF12775 AAA_7: P-loop contain 97.8 5.5E-05 1.2E-09 86.0 7.8 139 971-1120 34-195 (272)
299 PRK07132 DNA polymerase III su 97.7 0.00062 1.3E-08 78.5 16.1 141 971-1138 19-177 (299)
300 PRK05818 DNA polymerase III su 97.7 0.0006 1.3E-08 76.7 14.0 121 968-1105 5-147 (261)
301 KOG0477 DNA replication licens 97.7 7.7E-05 1.7E-09 90.1 7.2 169 915-1102 438-629 (854)
302 COG3283 TyrR Transcriptional r 97.6 0.00033 7.1E-09 80.5 11.7 166 972-1153 229-430 (511)
303 PF00931 NB-ARC: NB-ARC domain 97.6 0.0012 2.7E-08 74.4 16.0 157 969-1147 18-202 (287)
304 KOG2170 ATPase of the AAA+ sup 97.6 0.00089 1.9E-08 75.9 14.2 132 937-1084 84-224 (344)
305 KOG1881 Anion exchanger adapto 97.6 0.00011 2.3E-09 90.1 7.0 88 142-230 173-269 (793)
306 KOG2228 Origin recognition com 97.6 0.00035 7.7E-09 80.0 10.5 161 936-1118 25-219 (408)
307 KOG0481 DNA replication licens 97.6 0.00019 4.1E-09 85.3 8.5 186 914-1118 319-528 (729)
308 COG1618 Predicted nucleotide k 97.6 0.00097 2.1E-08 69.7 12.6 25 970-994 5-29 (179)
309 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00048 1E-08 81.4 11.0 103 967-1085 59-168 (362)
310 PRK00080 ruvB Holliday junctio 97.4 0.0018 4E-08 75.4 14.7 59 426-498 23-81 (328)
311 KOG0479 DNA replication licens 97.3 0.0004 8.7E-09 83.6 7.8 171 936-1118 302-498 (818)
312 PF00910 RNA_helicase: RNA hel 97.3 0.00047 1E-08 67.4 7.0 23 973-995 1-23 (107)
313 PRK00771 signal recognition pa 97.3 0.0094 2E-07 72.2 19.2 37 969-1005 94-133 (437)
314 TIGR01618 phage_P_loop phage n 97.3 0.00066 1.4E-08 75.0 8.6 72 970-1043 12-95 (220)
315 TIGR02237 recomb_radB DNA repa 97.3 0.00099 2.1E-08 72.1 9.8 74 970-1043 12-111 (209)
316 cd01124 KaiC KaiC is a circadi 97.3 0.0012 2.7E-08 69.6 10.1 71 973-1043 2-109 (187)
317 PHA00729 NTP-binding motif con 97.3 0.00057 1.2E-08 75.6 7.6 28 971-998 18-45 (226)
318 KOG1968 Replication factor C, 97.3 0.0004 8.7E-09 89.4 7.3 159 973-1150 360-531 (871)
319 COG3284 AcoR Transcriptional a 97.3 0.00051 1.1E-08 84.4 7.8 176 971-1154 337-539 (606)
320 TIGR00635 ruvB Holliday juncti 97.2 0.0026 5.7E-08 72.9 12.8 52 436-499 10-61 (305)
321 COG3267 ExeA Type II secretory 97.2 0.0087 1.9E-07 66.9 15.9 173 972-1156 53-254 (269)
322 PLN03210 Resistant to P. syrin 97.1 0.0057 1.2E-07 82.6 16.4 172 933-1140 182-389 (1153)
323 KOG1882 Transcriptional regula 97.1 0.0011 2.4E-08 72.2 7.2 104 117-220 161-280 (293)
324 PF13207 AAA_17: AAA domain; P 97.1 0.00047 1E-08 67.7 4.1 31 973-1003 2-32 (121)
325 PF05673 DUF815: Protein of un 97.1 0.012 2.6E-07 65.8 15.3 111 677-811 94-208 (249)
326 cd01121 Sms Sms (bacterial rad 97.0 0.0037 8.1E-08 74.2 11.7 98 969-1066 81-197 (372)
327 PRK13342 recombination factor 97.0 0.0053 1.2E-07 73.9 13.2 76 690-812 91-166 (413)
328 PRK14962 DNA polymerase III su 97.0 0.0085 1.8E-07 73.4 14.6 73 691-810 117-189 (472)
329 COG5271 MDN1 AAA ATPase contai 97.0 0.0026 5.7E-08 83.3 10.1 134 971-1118 1544-1703(4600)
330 PRK11823 DNA repair protein Ra 96.9 0.0059 1.3E-07 74.3 12.5 98 969-1066 79-195 (446)
331 PRK08118 topology modulation p 96.9 0.0018 3.9E-08 68.4 7.1 33 971-1003 2-34 (167)
332 PF03266 NTPase_1: NTPase; In 96.9 0.00029 6.2E-09 74.7 1.0 27 972-998 1-30 (168)
333 PHA02544 44 clamp loader, smal 96.9 0.012 2.5E-07 68.0 14.2 75 692-812 101-175 (316)
334 PF14516 AAA_35: AAA-like doma 96.9 0.0076 1.6E-07 70.6 12.3 169 969-1151 30-243 (331)
335 COG2256 MGS1 ATPase related to 96.9 0.0017 3.7E-08 76.2 6.8 121 633-808 51-174 (436)
336 PRK07261 topology modulation p 96.9 0.0024 5.1E-08 67.7 7.4 34 972-1005 2-35 (171)
337 KOG1051 Chaperone HSP104 and r 96.9 0.0057 1.2E-07 78.7 11.8 139 971-1120 209-365 (898)
338 PRK00149 dnaA chromosomal repl 96.8 0.0053 1.1E-07 74.7 10.8 79 692-812 212-295 (450)
339 PRK12724 flagellar biosynthesi 96.8 0.023 4.9E-07 68.3 15.6 35 971-1005 224-262 (432)
340 PRK14974 cell division protein 96.8 0.025 5.5E-07 66.4 15.7 34 970-1003 140-176 (336)
341 PRK15455 PrkA family serine pr 96.8 0.0018 3.9E-08 79.7 6.2 63 933-1003 74-137 (644)
342 TIGR02640 gas_vesic_GvpN gas v 96.8 0.012 2.5E-07 66.7 12.4 37 465-503 20-56 (262)
343 PRK00131 aroK shikimate kinase 96.8 0.0014 3E-08 68.1 4.5 33 970-1002 4-36 (175)
344 PF05707 Zot: Zonular occluden 96.7 0.0018 3.9E-08 69.8 5.2 121 973-1103 3-144 (193)
345 PRK09361 radB DNA repair and r 96.7 0.0068 1.5E-07 66.5 9.8 36 969-1004 22-60 (225)
346 TIGR02012 tigrfam_recA protein 96.7 0.0085 1.8E-07 69.8 10.9 76 969-1044 54-148 (321)
347 PRK08533 flagellar accessory p 96.7 0.012 2.5E-07 65.5 11.7 73 970-1042 24-130 (230)
348 PRK04841 transcriptional regul 96.7 0.025 5.4E-07 74.2 16.4 153 971-1141 33-220 (903)
349 PRK10787 DNA-binding ATP-depen 96.7 0.053 1.2E-06 70.4 18.9 34 465-500 348-381 (784)
350 COG5271 MDN1 AAA ATPase contai 96.7 0.0048 1E-07 81.0 9.0 133 972-1118 890-1047(4600)
351 COG4650 RtcR Sigma54-dependent 96.7 0.0018 3.9E-08 72.7 4.8 67 972-1042 210-295 (531)
352 cd01129 PulE-GspE PulE/GspE Th 96.6 0.0074 1.6E-07 68.5 9.5 93 932-1039 57-159 (264)
353 PF06309 Torsin: Torsin; Inte 96.6 0.0076 1.6E-07 61.0 8.2 59 936-1001 26-89 (127)
354 cd00983 recA RecA is a bacter 96.6 0.011 2.5E-07 68.8 10.6 74 971-1044 56-148 (325)
355 PRK13695 putative NTPase; Prov 96.6 0.011 2.3E-07 62.5 9.6 23 972-994 2-24 (174)
356 PF13671 AAA_33: AAA domain; P 96.5 0.0042 9.1E-08 62.7 6.2 32 973-1006 2-33 (143)
357 COG3854 SpoIIIAA ncharacterize 96.5 0.014 3E-07 64.3 10.1 71 971-1041 138-230 (308)
358 cd01131 PilT Pilus retraction 96.5 0.0053 1.1E-07 66.6 6.8 67 972-1038 3-83 (198)
359 PRK13947 shikimate kinase; Pro 96.5 0.0026 5.6E-08 66.5 4.3 32 971-1002 2-33 (171)
360 PRK10867 signal recognition pa 96.5 0.12 2.6E-06 62.7 18.9 73 969-1041 99-195 (433)
361 PRK05800 cobU adenosylcobinami 96.5 0.018 3.9E-07 61.3 10.6 69 972-1044 3-91 (170)
362 PRK04296 thymidine kinase; Pro 96.4 0.02 4.4E-07 61.7 11.0 69 972-1041 4-90 (190)
363 TIGR00390 hslU ATP-dependent p 96.4 0.0035 7.6E-08 74.9 5.5 82 419-505 2-84 (441)
364 PF13191 AAA_16: AAA ATPase do 96.4 0.0083 1.8E-07 62.8 7.6 59 937-1006 2-63 (185)
365 PRK03839 putative kinase; Prov 96.4 0.0029 6.3E-08 67.0 4.2 31 972-1002 2-32 (180)
366 TIGR02858 spore_III_AA stage I 96.4 0.0064 1.4E-07 69.3 7.1 69 971-1039 112-204 (270)
367 PF13604 AAA_30: AAA domain; P 96.4 0.0095 2.1E-07 64.6 8.1 98 971-1084 19-132 (196)
368 PRK10536 hypothetical protein; 96.4 0.019 4.1E-07 64.9 10.5 22 972-993 76-97 (262)
369 cd01394 radB RadB. The archaea 96.4 0.018 3.9E-07 62.8 10.2 34 971-1004 20-56 (218)
370 KOG2543 Origin recognition com 96.4 0.024 5.3E-07 66.4 11.5 156 936-1117 7-192 (438)
371 COG1373 Predicted ATPase (AAA+ 96.3 0.041 8.9E-07 66.2 13.8 133 972-1124 39-186 (398)
372 PHA02624 large T antigen; Prov 96.3 0.019 4.1E-07 71.3 10.9 120 971-1104 432-561 (647)
373 PRK12723 flagellar biosynthesi 96.3 0.025 5.4E-07 67.6 11.7 113 970-1096 174-309 (388)
374 KOG2383 Predicted ATPase [Gene 96.3 0.015 3.3E-07 68.3 9.5 28 967-994 111-138 (467)
375 cd00464 SK Shikimate kinase (S 96.3 0.0037 8E-08 63.9 4.0 31 972-1002 1-31 (154)
376 PRK00625 shikimate kinase; Pro 96.3 0.0039 8.4E-08 66.5 4.2 31 972-1002 2-32 (173)
377 TIGR00416 sms DNA repair prote 96.2 0.024 5.3E-07 69.2 11.4 76 968-1043 92-184 (454)
378 cd00046 DEXDc DEAD-like helica 96.2 0.015 3.3E-07 56.5 7.8 23 972-994 2-24 (144)
379 PRK09376 rho transcription ter 96.2 0.01 2.3E-07 70.4 7.6 72 971-1042 170-269 (416)
380 COG1485 Predicted ATPase [Gene 96.2 0.039 8.4E-07 64.4 12.0 101 967-1084 62-170 (367)
381 cd03283 ABC_MutS-like MutS-lik 96.2 0.026 5.7E-07 61.4 10.2 69 971-1039 26-115 (199)
382 TIGR00959 ffh signal recogniti 96.2 0.25 5.4E-06 60.0 19.4 73 969-1041 98-194 (428)
383 PRK06217 hypothetical protein; 96.2 0.005 1.1E-07 65.7 4.4 32 971-1002 2-33 (183)
384 PHA02774 E1; Provisional 96.2 0.064 1.4E-06 66.5 14.3 32 971-1002 435-467 (613)
385 PRK14532 adenylate kinase; Pro 96.1 0.0047 1E-07 65.8 4.1 35 972-1008 2-36 (188)
386 PRK14722 flhF flagellar biosyn 96.1 0.015 3.2E-07 69.2 8.4 108 971-1092 138-266 (374)
387 PF06745 KaiC: KaiC; InterPro 96.1 0.042 9.1E-07 60.4 11.6 94 969-1066 18-148 (226)
388 PRK13949 shikimate kinase; Pro 96.1 0.0049 1.1E-07 65.3 4.1 32 971-1002 2-33 (169)
389 PRK14088 dnaA chromosomal repl 96.1 0.031 6.7E-07 68.0 11.4 79 691-811 194-277 (440)
390 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.06 1.3E-06 60.0 12.7 36 968-1003 19-57 (237)
391 PRK06067 flagellar accessory p 96.1 0.044 9.6E-07 60.7 11.6 74 969-1042 24-133 (234)
392 PRK06581 DNA polymerase III su 96.1 0.091 2E-06 58.8 13.7 146 971-1135 16-176 (263)
393 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0052 1.1E-07 65.0 3.9 33 973-1007 2-34 (183)
394 PRK04195 replication factor C 96.0 0.063 1.4E-06 66.1 13.7 36 466-503 39-74 (482)
395 PF00448 SRP54: SRP54-type pro 96.0 0.042 9.2E-07 59.8 10.8 69 971-1039 2-93 (196)
396 PRK06762 hypothetical protein; 96.0 0.015 3.2E-07 60.7 7.0 37 971-1007 3-39 (166)
397 cd00544 CobU Adenosylcobinamid 96.0 0.04 8.7E-07 58.6 10.2 71 973-1045 2-89 (169)
398 PRK13948 shikimate kinase; Pro 96.0 0.0072 1.6E-07 65.0 4.6 36 967-1002 7-42 (182)
399 PRK09354 recA recombinase A; P 96.0 0.044 9.5E-07 64.6 11.3 73 971-1043 61-152 (349)
400 cd01393 recA_like RecA is a b 95.9 0.047 1E-06 59.7 10.9 37 969-1005 18-63 (226)
401 PF13479 AAA_24: AAA domain 95.9 0.03 6.5E-07 61.4 9.2 68 971-1042 4-81 (213)
402 cd01122 GP4d_helicase GP4d_hel 95.9 0.063 1.4E-06 60.5 12.0 35 969-1003 29-67 (271)
403 PRK05973 replicative DNA helic 95.9 0.068 1.5E-06 59.9 12.0 37 968-1004 62-101 (237)
404 PRK04040 adenylate kinase; Pro 95.9 0.055 1.2E-06 58.4 11.0 29 971-999 3-33 (188)
405 KOG3347 Predicted nucleotide k 95.9 0.0059 1.3E-07 63.1 3.3 32 971-1002 8-39 (176)
406 PRK14531 adenylate kinase; Pro 95.9 0.0079 1.7E-07 64.2 4.4 31 971-1001 3-33 (183)
407 TIGR01425 SRP54_euk signal rec 95.9 0.11 2.3E-06 63.1 14.3 73 969-1041 99-194 (429)
408 TIGR01420 pilT_fam pilus retra 95.9 0.015 3.3E-07 68.4 7.1 69 971-1039 123-205 (343)
409 COG0703 AroK Shikimate kinase 95.9 0.0063 1.4E-07 64.7 3.5 32 971-1002 3-34 (172)
410 cd00984 DnaB_C DnaB helicase C 95.9 0.074 1.6E-06 58.8 12.1 35 969-1003 12-50 (242)
411 cd02020 CMPK Cytidine monophos 95.9 0.0074 1.6E-07 60.9 3.9 30 973-1002 2-31 (147)
412 COG0563 Adk Adenylate kinase a 95.9 0.008 1.7E-07 64.4 4.3 33 972-1006 2-34 (178)
413 TIGR01650 PD_CobS cobaltochela 95.9 0.12 2.6E-06 60.5 14.0 35 466-502 64-98 (327)
414 TIGR02533 type_II_gspE general 95.9 0.031 6.8E-07 68.8 9.9 94 931-1039 218-321 (486)
415 cd01428 ADK Adenylate kinase ( 95.8 0.0071 1.5E-07 64.3 3.8 29 973-1001 2-30 (194)
416 cd02021 GntK Gluconate kinase 95.8 0.0074 1.6E-07 61.8 3.8 29 973-1001 2-30 (150)
417 PF00437 T2SE: Type II/IV secr 95.8 0.014 3.1E-07 65.8 6.4 97 931-1039 100-207 (270)
418 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.04 8.6E-07 60.7 9.7 37 969-1005 18-63 (235)
419 PRK08233 hypothetical protein; 95.8 0.052 1.1E-06 57.0 10.1 32 971-1002 4-36 (182)
420 TIGR02928 orc1/cdc6 family rep 95.8 0.031 6.6E-07 65.7 9.2 94 676-811 116-213 (365)
421 PRK14530 adenylate kinase; Pro 95.8 0.0088 1.9E-07 65.5 4.3 30 972-1001 5-34 (215)
422 PF05496 RuvB_N: Holliday junc 95.8 0.0026 5.7E-08 70.2 0.1 78 633-730 53-136 (233)
423 PRK11889 flhF flagellar biosyn 95.7 0.072 1.6E-06 63.6 11.7 71 971-1041 242-332 (436)
424 PRK10436 hypothetical protein; 95.7 0.035 7.6E-07 67.8 9.4 94 931-1039 194-297 (462)
425 COG5245 DYN1 Dynein, heavy cha 95.7 0.057 1.2E-06 71.2 11.3 137 971-1120 1495-1660(3164)
426 PTZ00088 adenylate kinase 1; P 95.7 0.01 2.2E-07 66.2 4.2 32 971-1002 7-38 (229)
427 PRK12726 flagellar biosynthesi 95.7 0.074 1.6E-06 63.3 11.4 99 939-1041 179-297 (407)
428 PRK03731 aroL shikimate kinase 95.7 0.011 2.5E-07 61.9 4.4 32 971-1002 3-34 (171)
429 TIGR01313 therm_gnt_kin carboh 95.6 0.0087 1.9E-07 62.2 3.3 28 973-1000 1-28 (163)
430 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.11 2.5E-06 58.8 12.5 36 969-1004 35-73 (259)
431 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.1 2.2E-06 57.0 11.8 53 424-493 11-63 (226)
432 COG2804 PulE Type II secretory 95.6 0.049 1.1E-06 66.2 9.8 102 924-1040 227-338 (500)
433 cd00227 CPT Chloramphenicol (C 95.6 0.01 2.2E-07 62.8 3.7 34 971-1004 3-36 (175)
434 TIGR03574 selen_PSTK L-seryl-t 95.6 0.048 1E-06 61.1 9.2 34 973-1006 2-38 (249)
435 PRK14528 adenylate kinase; Pro 95.6 0.012 2.6E-07 63.2 4.3 31 971-1001 2-32 (186)
436 cd01128 rho_factor Transcripti 95.6 0.033 7.2E-07 62.8 7.9 26 971-996 17-42 (249)
437 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.11 2.3E-06 57.3 11.5 22 971-992 30-51 (213)
438 PRK02496 adk adenylate kinase; 95.5 0.012 2.7E-07 62.5 4.1 31 971-1001 2-32 (184)
439 cd03243 ABC_MutS_homologs The 95.5 0.097 2.1E-06 56.8 11.0 22 971-992 30-51 (202)
440 COG4088 Predicted nucleotide k 95.5 0.072 1.6E-06 58.1 9.7 23 972-994 3-25 (261)
441 TIGR02782 TrbB_P P-type conjug 95.5 0.025 5.4E-07 65.5 6.7 69 971-1039 133-214 (299)
442 TIGR03880 KaiC_arch_3 KaiC dom 95.5 0.13 2.9E-06 56.4 12.2 36 969-1004 15-53 (224)
443 PRK06547 hypothetical protein; 95.5 0.014 3.1E-07 62.1 4.4 34 969-1002 14-47 (172)
444 PRK13946 shikimate kinase; Pro 95.5 0.012 2.6E-07 62.9 3.8 32 971-1002 11-42 (184)
445 PF10236 DAP3: Mitochondrial r 95.5 0.55 1.2E-05 54.8 17.6 126 1019-1145 143-307 (309)
446 PRK13764 ATPase; Provisional 95.4 0.027 6E-07 70.5 7.3 68 971-1039 258-334 (602)
447 TIGR02525 plasmid_TraJ plasmid 95.4 0.029 6.3E-07 66.7 7.2 69 971-1039 150-235 (372)
448 PRK05057 aroK shikimate kinase 95.4 0.015 3.3E-07 61.7 4.3 33 971-1003 5-37 (172)
449 TIGR01360 aden_kin_iso1 adenyl 95.4 0.016 3.5E-07 61.2 4.5 30 971-1000 4-33 (188)
450 PRK10416 signal recognition pa 95.4 0.28 6E-06 57.4 14.9 35 969-1003 113-150 (318)
451 smart00487 DEXDc DEAD-like hel 95.4 0.084 1.8E-06 54.6 9.6 24 971-994 25-49 (201)
452 PRK05201 hslU ATP-dependent pr 95.4 0.014 3E-07 69.9 4.2 82 420-506 6-88 (443)
453 TIGR00064 ftsY signal recognit 95.4 0.35 7.5E-06 55.4 15.3 36 969-1004 71-109 (272)
454 cd02027 APSK Adenosine 5'-phos 95.3 0.04 8.8E-07 57.1 7.1 34 973-1006 2-38 (149)
455 TIGR02538 type_IV_pilB type IV 95.3 0.049 1.1E-06 68.3 9.1 94 931-1039 292-395 (564)
456 PF04665 Pox_A32: Poxvirus A32 95.3 0.18 4E-06 56.6 12.6 130 971-1117 14-169 (241)
457 TIGR01448 recD_rel helicase, p 95.3 0.07 1.5E-06 68.8 10.6 101 972-1089 340-459 (720)
458 PRK04328 hypothetical protein; 95.3 0.17 3.8E-06 56.9 12.5 36 968-1003 21-59 (249)
459 cd03280 ABC_MutS2 MutS2 homolo 95.3 0.12 2.5E-06 56.1 10.8 21 971-991 29-49 (200)
460 PRK00279 adk adenylate kinase; 95.3 0.016 3.5E-07 63.4 4.1 30 972-1001 2-31 (215)
461 smart00534 MUTSac ATPase domai 95.3 0.15 3.3E-06 54.7 11.3 19 973-991 2-20 (185)
462 PLN02200 adenylate kinase fami 95.3 0.019 4.1E-07 64.1 4.6 38 969-1008 42-79 (234)
463 COG4619 ABC-type uncharacteriz 95.2 0.056 1.2E-06 57.3 7.6 26 969-994 28-53 (223)
464 TIGR01351 adk adenylate kinase 95.2 0.016 3.4E-07 63.3 3.8 29 973-1001 2-30 (210)
465 PRK08154 anaerobic benzoate ca 95.2 0.027 5.9E-07 65.4 5.9 36 967-1002 130-165 (309)
466 TIGR03499 FlhF flagellar biosy 95.2 0.13 2.8E-06 59.1 11.2 36 970-1005 194-234 (282)
467 PF13481 AAA_25: AAA domain; P 95.2 0.11 2.4E-06 55.2 10.1 74 971-1044 33-156 (193)
468 PF13238 AAA_18: AAA domain; P 95.2 0.016 3.5E-07 56.8 3.3 22 973-994 1-22 (129)
469 cd01130 VirB11-like_ATPase Typ 95.2 0.046 1E-06 58.6 7.1 69 971-1039 26-110 (186)
470 PF09848 DUF2075: Uncharacteri 95.1 0.05 1.1E-06 64.2 7.9 23 972-994 3-25 (352)
471 PRK13900 type IV secretion sys 95.1 0.035 7.5E-07 65.2 6.5 69 971-1039 161-245 (332)
472 KOG0745 Putative ATP-dependent 95.1 0.038 8.2E-07 65.6 6.6 36 468-505 228-263 (564)
473 cd03216 ABC_Carb_Monos_I This 95.1 0.088 1.9E-06 55.2 8.9 72 969-1040 25-111 (163)
474 PRK14960 DNA polymerase III su 95.1 0.22 4.7E-06 63.1 13.5 73 691-810 118-190 (702)
475 PF07693 KAP_NTPase: KAP famil 95.1 0.71 1.5E-05 53.3 17.1 28 968-995 18-45 (325)
476 COG0541 Ffh Signal recognition 95.1 2.6 5.6E-05 51.0 21.6 203 967-1202 97-340 (451)
477 PRK14956 DNA polymerase III su 95.1 0.078 1.7E-06 64.9 9.4 74 690-810 120-193 (484)
478 cd03115 SRP The signal recogni 95.1 0.081 1.8E-06 55.6 8.5 33 972-1004 2-37 (173)
479 COG1102 Cmk Cytidylate kinase 95.1 0.019 4.2E-07 60.3 3.6 29 972-1000 2-30 (179)
480 PRK06696 uridine kinase; Valid 95.0 0.053 1.1E-06 59.8 7.2 38 970-1007 22-62 (223)
481 KOG2028 ATPase related to the 95.0 0.058 1.3E-06 62.8 7.4 107 614-735 148-261 (554)
482 COG0324 MiaA tRNA delta(2)-iso 95.0 0.1 2.2E-06 60.4 9.5 36 971-1006 4-39 (308)
483 PRK04301 radA DNA repair and r 94.9 0.13 2.8E-06 59.9 10.3 36 970-1005 102-146 (317)
484 PRK00411 cdc6 cell division co 94.9 0.13 2.8E-06 61.1 10.6 95 674-811 123-221 (394)
485 COG2874 FlaH Predicted ATPases 94.9 0.21 4.6E-06 54.9 11.0 112 973-1096 31-178 (235)
486 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.22 4.8E-06 54.8 11.6 35 969-1003 19-56 (229)
487 PRK14527 adenylate kinase; Pro 94.9 0.022 4.8E-07 61.1 3.6 31 971-1001 7-37 (191)
488 PRK04182 cytidylate kinase; Pr 94.9 0.025 5.5E-07 59.2 4.0 29 972-1000 2-30 (180)
489 PF06414 Zeta_toxin: Zeta toxi 94.8 0.076 1.6E-06 57.5 7.7 40 969-1008 14-54 (199)
490 TIGR02655 circ_KaiC circadian 94.8 0.2 4.2E-06 61.9 12.1 74 969-1042 262-366 (484)
491 COG1066 Sms Predicted ATP-depe 94.8 0.22 4.7E-06 59.4 11.7 97 969-1065 92-206 (456)
492 PRK07003 DNA polymerase III su 94.8 0.27 5.8E-06 63.0 13.3 42 691-735 119-160 (830)
493 PTZ00202 tuzin; Provisional 94.8 0.49 1.1E-05 57.3 14.6 60 934-1004 261-320 (550)
494 KOG0245 Kinesin-like protein [ 94.8 0.059 1.3E-06 69.0 7.5 79 144-228 476-557 (1221)
495 PRK13833 conjugal transfer pro 94.8 0.053 1.2E-06 63.4 6.7 69 971-1039 145-225 (323)
496 PRK13894 conjugal transfer ATP 94.8 0.048 1E-06 63.7 6.3 69 971-1039 149-229 (319)
497 TIGR02788 VirB11 P-type DNA tr 94.8 0.045 9.8E-07 63.5 6.1 69 971-1039 145-228 (308)
498 COG2909 MalT ATP-dependent tra 94.8 0.36 7.7E-06 61.9 14.1 153 971-1141 38-228 (894)
499 PF08433 KTI12: Chromatin asso 94.7 0.14 3E-06 58.6 9.7 70 972-1041 3-82 (270)
500 PF00406 ADK: Adenylate kinase 94.7 0.027 5.9E-07 58.0 3.7 32 975-1008 1-32 (151)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-67 Score=608.60 Aligned_cols=563 Identities=29% Similarity=0.439 Sum_probs=438.6
Q ss_pred CCccccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 000888 419 DGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 498 (1237)
Q Consensus 419 ~~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~ 498 (1237)
.....+|+|.++... +.|-..|..-+ .|++|+++..|+--. .++.|||.|||| |.++|||.|+|.++|+++|-
T Consensus 181 ~~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lGv~--PprGvLlHGPPG--CGKT~lA~AiAgel~vPf~~ 253 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLGVR--PPRGVLLHGPPG--CGKTSLANAIAGELGVPFLS 253 (802)
T ss_pred CCCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcCCC--CCCceeeeCCCC--ccHHHHHHHHhhhcCCceEe
Confidence 355668999997665 66666666544 579999998776433 357899999999 99999999999999999987
Q ss_pred EeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 000888 499 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 578 (1237)
Q Consensus 499 ~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1237)
+-...+-+|+
T Consensus 254 isApeivSGv---------------------------------------------------------------------- 263 (802)
T KOG0733|consen 254 ISAPEIVSGV---------------------------------------------------------------------- 263 (802)
T ss_pred ecchhhhccc----------------------------------------------------------------------
Confidence 6554333221
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCccccc
Q 000888 579 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 658 (1237)
Q Consensus 579 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 658 (1237)
T Consensus 264 -------------------------------------------------------------------------------- 263 (802)
T KOG0733|consen 264 -------------------------------------------------------------------------------- 263 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhhHHHHHhcC----------CCc
Q 000888 659 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRLEKL----------PDK 724 (1237)
Q Consensus 659 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~----~~~~~~~~lk~~L~~l----------~g~ 724 (1237)
.|| .+.-|+.||+.+.+ ..|+||||||||.+-. .+.++-..+...|... ..+
T Consensus 264 ---------SGE--SEkkiRelF~~A~~---~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 264 ---------SGE--SEKKIRELFDQAKS---NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---------Ccc--cHHHHHHHHHHHhc---cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 123 55589999999999 9999999999999775 4455555666666221 248
Q ss_pred EEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHH
Q 000888 725 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 804 (1237)
Q Consensus 725 vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~ 804 (1237)
|+|||+||++|+.||+ |||.|| |+++|.++.|++.+|.+
T Consensus 330 VlVIgATnRPDslDpa-------LRRaGR----------------------------------FdrEI~l~vP~e~aR~~ 368 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPA-------LRRAGR----------------------------------FDREICLGVPSETAREE 368 (802)
T ss_pred eEEEecCCCCcccCHH-------Hhcccc----------------------------------ccceeeecCCchHHHHH
Confidence 9999999999999999 999999 99999999999999999
Q ss_pred HHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCC-----Ccc--
Q 000888 805 SWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD-----PDA-- 877 (1237)
Q Consensus 805 IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~-----~~~-- 877 (1237)
||+++.+. +.+.-++++-+.+-.+.||-|+||.+||.++..+ |+.|++.....|. ...
T Consensus 369 IL~~~~~~----lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v-----------AikR~ld~~~~p~~~~~~~ed~~ 433 (802)
T KOG0733|consen 369 ILRIICRG----LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV-----------AIKRILDQSSSPLTKVPISEDSS 433 (802)
T ss_pred HHHHHHhh----CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH-----------HHHHHhhcccCccccCCcccccc
Confidence 99987644 6777788888889999999999999999987663 4444444222111 000
Q ss_pred -------c--ccccch-----hhhhHHHHHHHHHHhhhhhh--hcccccCCHHHHHHHHh--------cCcCCCCCCCcc
Q 000888 878 -------R--LVLSCE-----SIQYGIGIFQAIQNESKSLK--KSLKDVVTENEFEKRLL--------ADVIPPSDIGVT 933 (1237)
Q Consensus 878 -------~--l~l~~e-----d~~~al~~lq~i~~~~k~~k--~~~k~~v~~~e~e~~ll--------~~ii~~~~~~vt 933 (1237)
. +.++.. ++...+ .+.+.....++. ..-.-.+.-+||+..+. .+++. .++++
T Consensus 434 ~~~~~~d~S~i~~~~~~~~~~~ld~v~--~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~t--VPdVt 509 (802)
T KOG0733|consen 434 NKDAEEDQSSIKITSNAERPLELDRVV--QDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFAT--VPDVT 509 (802)
T ss_pred CCCccchhhhhhcCCcccccccHHHHH--HHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhccccee--cCCCC
Confidence 0 111000 111111 011222111111 01112255677776542 12222 35799
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccc
Q 000888 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGE 1013 (1237)
Q Consensus 934 f~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~ 1013 (1237)
|+|||++++++.+|...|.+|.++|+.|...|+..| .||||+||||||||.||+|+|++.+++|+.|..++|+.+|+|+
T Consensus 510 W~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~P-sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 510 WDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAP-SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred hhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCC-CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 999999999999999999999999999999997665 8999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHH
Q 000888 1014 GEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI 1093 (1237)
Q Consensus 1014 se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLl 1093 (1237)
+|..++++|..|+.++|||||+||||.|++.|+... .....+++|+||+.|||+.. +..|.|||+||+|+.+||+++
T Consensus 589 SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiL 665 (802)
T KOG0733|consen 589 SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAIL 665 (802)
T ss_pred HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhc
Confidence 999999999999999999999999999999987644 67778999999999999954 578999999999999999999
Q ss_pred h--hccccccCCCCCHHHHHHHHHHHHh--hCCCCChhhHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1094 R--RLPRRLMVNLPDAPNRAKILQVILA--KEDLSPDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKEILEKEKKER 1167 (1237)
Q Consensus 1094 r--RFd~~I~v~~Pd~eeR~eILk~~L~--~~~l~~d~dl~~LA~~T~--GySgaDL~~L~~~Aa~~aireil~~e~~~~ 1167 (1237)
| |||..++|++|+.++|..||+.+.+ +..+.+++|+++||+.+. ||+|+||..||++|...++++.+......
T Consensus 666 RPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~- 744 (802)
T KOG0733|consen 666 RPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSS- 744 (802)
T ss_pred CCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcccc-
Confidence 9 9999999999999999999999998 667889999999999876 99999999999999999999866422110
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcCCCCc
Q 000888 1168 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 1228 (1237)
Q Consensus 1168 ~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~gsr 1228 (1237)
. ....-......+++.||++|+++++||+++.... -|.+-+..+|..-..
T Consensus 745 -------~--~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~--~Yd~l~k~~~L~~~~ 794 (802)
T KOG0733|consen 745 -------E--DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRK--KYDRLNKSRSLSTAT 794 (802)
T ss_pred -------C--cccceeeeeeeecHHHHHHHHHhcCCCccHHHHH--HHHHHhhhhcccccC
Confidence 0 0000000124689999999999999999977443 356666666654433
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-60 Score=559.25 Aligned_cols=405 Identities=31% Similarity=0.517 Sum_probs=343.5
Q ss_pred HHHHHHHHHhhhccCC-CeEEEEcchhhhhcCCcc---hhhhHHHHH----hcC--CCcEEEEEeeccCCCccccCCCCC
Q 000888 676 LINTLFEVVFSESRSC-PFILFMKDAEKSIAGNSD---SYSTFKSRL----EKL--PDKVIVIGSHTHTDNRKEKSHPGG 745 (1237)
Q Consensus 676 ~i~~L~ev~~~~~~~~-p~ILfi~di~~~~~~~~~---~~~~lk~~L----~~l--~g~vvvIGst~~~d~~~~~~~~~~ 745 (1237)
-++..|+.+.+ .+ |+||||||++.+..++.. .-..+.+.| +-+ .++|+||+++++++..||+
T Consensus 265 ~LR~~f~~a~k---~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~a----- 336 (693)
T KOG0730|consen 265 NLRKAFAEALK---FQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPA----- 336 (693)
T ss_pred HHHHHHHHHhc---cCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChh-----
Confidence 56777777777 77 999999999998763322 233344444 333 3799999999999999998
Q ss_pred ccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchh
Q 000888 746 LLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNH 825 (1237)
Q Consensus 746 ~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~ 825 (1237)
||| || |+++++|+.|+..+|++|++.+.++ +....++.+
T Consensus 337 --lRR-gR----------------------------------fd~ev~IgiP~~~~RldIl~~l~k~----~~~~~~~~l 375 (693)
T KOG0730|consen 337 --LRR-GR----------------------------------FDREVEIGIPGSDGRLDILRVLTKK----MNLLSDVDL 375 (693)
T ss_pred --hhc-CC----------------------------------CcceeeecCCCchhHHHHHHHHHHh----cCCcchhhH
Confidence 888 88 9999999999999999999999865 444567888
Q ss_pred HHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHHHHHHHhhhhhhh
Q 000888 826 LRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKK 905 (1237)
Q Consensus 826 l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~lq~i~~~~k~~k~ 905 (1237)
...+-.++||.|+||..+|.++.+ .++.+ +.++|..++.- +++
T Consensus 376 ~~iA~~thGyvGaDL~~l~~ea~~---------------~~~r~------------~~~~~~~A~~~---i~p------- 418 (693)
T KOG0730|consen 376 EDIAVSTHGYVGADLAALCREASL---------------QATRR------------TLEIFQEALMG---IRP------- 418 (693)
T ss_pred HHHHHHccchhHHHHHHHHHHHHH---------------HHhhh------------hHHHHHHHHhc---CCc-------
Confidence 888999999999999999886544 11110 23333333321 111
Q ss_pred cccccCCHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHH
Q 000888 906 SLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 985 (1237)
Q Consensus 906 ~~k~~v~~~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~ 985 (1237)
.. +..-+ .+-+.++|+||+|++++|..|++.|.+|+++|+.|.+.++ .|++|||||||||||||+
T Consensus 419 -------sa-----~Re~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~ 483 (693)
T KOG0730|consen 419 -------SA-----LREIL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTL 483 (693)
T ss_pred -------hh-----hhhee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHH
Confidence 00 11111 3445799999999999999999999999999999999885 455999999999999999
Q ss_pred HHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHh
Q 000888 986 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1065 (1237)
Q Consensus 986 LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~l 1065 (1237)
+|+|+|++.+++|+.+.+++++++|+|++|..++++|+.|+..+|||||+||||.+.+.|+... ..+..+++++||++|
T Consensus 484 lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEm 562 (693)
T KOG0730|consen 484 LAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEM 562 (693)
T ss_pred HHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999997433 378899999999999
Q ss_pred cCCcccCCccEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHH
Q 000888 1066 DGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 1143 (1237)
Q Consensus 1066 dgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaD 1143 (1237)
||+.. ..+|+|||+||+|+.||++++| |||+.|+|++||.+.|.+||+.+++++.+.+++|+..||+.|+||||+|
T Consensus 563 DG~e~--~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAe 640 (693)
T KOG0730|consen 563 DGLEA--LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAE 640 (693)
T ss_pred ccccc--cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHH
Confidence 99965 4789999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 000888 1144 LKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1208 (1237)
Q Consensus 1144 L~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e 1208 (1237)
|.++|++|+..++++.++ ...++.+||++|++.++++....
T Consensus 641 l~~lCq~A~~~a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 641 IVAVCQEAALLALRESIE------------------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHHHHHHHHHHHHhcc------------------------cccccHHHHHHHHHhhcccCCHH
Confidence 999999999999998543 24699999999999999998765
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-55 Score=490.74 Aligned_cols=380 Identities=59% Similarity=0.929 Sum_probs=347.9
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHHHHHHHhhhhhhhccc-ccCCHHHHHHHHh
Q 000888 843 LCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLK-DVVTENEFEKRLL 921 (1237)
Q Consensus 843 Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~lq~i~~~~k~~k~~~k-~~v~~~e~e~~ll 921 (1237)
.|..+..+....++.++.+|++||+++...+.-+....+..+++.++...+++.... .+++ ..+..++++..+.
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~ 78 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDPNLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIA 78 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccChhhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhh
Confidence 456666677888999999999999998887774458889999999987777665332 2233 4788999999999
Q ss_pred cCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 922 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 922 ~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
.+++++.+++++|+||+|++.++++|++.|..|+++|++|..+++.+|++|||||||||||||++|+|+|++.|++|+.|
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEe
Q 000888 1002 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1081 (1237)
Q Consensus 1002 d~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaT 1081 (1237)
.++.+.++|+|+.++.++.+|..|.+.+|+||||||||.+++.| ...+|++...+.++||..|||+.++++.+|+|+|+
T Consensus 159 ~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA 237 (386)
T KOG0737|consen 159 SVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGA 237 (386)
T ss_pred eccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999 78899999999999999999999998889999999
Q ss_pred cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 000888 1082 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1161 (1237)
Q Consensus 1082 TN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~ 1161 (1237)
||+|.+||++++||+.++++|+.|+.++|.+||+.+++.+.+.+++|+.++|++|+||||+||+++|..|++.++++++.
T Consensus 238 TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 238 TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH--HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcCCCCc
Q 000888 1162 KE--KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 1228 (1237)
Q Consensus 1162 ~e--~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~gsr 1228 (1237)
.+ ..+......+..+.++....-..++++++||..|+.+|.+++..+...|....+|++.||++|+|
T Consensus 318 ~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 318 SETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred hcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 87 33344444555555555555668999999999999999999988989999999999999999987
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7.4e-52 Score=520.39 Aligned_cols=539 Identities=28% Similarity=0.451 Sum_probs=415.9
Q ss_pred ccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 000888 423 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 502 (1237)
Q Consensus 423 ~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d~~ 502 (1237)
-+++|+++-.+ +..+..|.+.+...|+|+++.+... + ...+.|||+||+| ..+++||||||++.+++++.++..
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g-i-~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~~ 246 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG-I-EPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISINGP 246 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC-C-CCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEecH
Confidence 46889996554 8899999999988999988753321 2 3456799999999 899999999999999998777643
Q ss_pred ccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 000888 503 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 582 (1237)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 582 (1237)
.+..
T Consensus 247 ~i~~---------------------------------------------------------------------------- 250 (733)
T TIGR01243 247 EIMS---------------------------------------------------------------------------- 250 (733)
T ss_pred HHhc----------------------------------------------------------------------------
Confidence 3322
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCccccccccc
Q 000888 583 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 662 (1237)
Q Consensus 583 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 662 (1237)
+|
T Consensus 251 ---------~~--------------------------------------------------------------------- 252 (733)
T TIGR01243 251 ---------KY--------------------------------------------------------------------- 252 (733)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 01
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcc--------hhhhHHHHHhcC--CCcEEEEEeec
Q 000888 663 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSD--------SYSTFKSRLEKL--PDKVIVIGSHT 732 (1237)
Q Consensus 663 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~~~--------~~~~lk~~L~~l--~g~vvvIGst~ 732 (1237)
.|+ ....++.+|+.+.. ..|.||||||||.+...+.. +.+.|-..|+.+ .+.|+|||+||
T Consensus 253 -----~g~--~~~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn 322 (733)
T TIGR01243 253 -----YGE--SEERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN 322 (733)
T ss_pred -----ccH--HHHHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC
Confidence 111 23357778888776 88999999999997753221 222333334433 46899999999
Q ss_pred cCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000888 733 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1237)
Q Consensus 733 ~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~ 812 (1237)
+++..|++ |+|+|| |++.++|++|+.++|.+||+.++..
T Consensus 323 ~~~~ld~a-------l~r~gR----------------------------------fd~~i~i~~P~~~~R~~Il~~~~~~ 361 (733)
T TIGR01243 323 RPDALDPA-------LRRPGR----------------------------------FDREIVIRVPDKRARKEILKVHTRN 361 (733)
T ss_pred ChhhcCHH-------HhCchh----------------------------------ccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 99887777 777777 8889999999999999999977643
Q ss_pred hhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCC-----C---Ccccccccch
Q 000888 813 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEA-----D---PDARLVLSCE 884 (1237)
Q Consensus 813 ~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p-----~---~~~~l~l~~e 884 (1237)
..+..++.....+-.+.||.++||..+|..+.. .++.+.+...... . ......++.+
T Consensus 362 ----~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~-----------~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~ 426 (733)
T TIGR01243 362 ----MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM-----------AALRRFIREGKINFEAEEIPAEVLKELKVTMK 426 (733)
T ss_pred ----CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH-----------HHHHHHhhccccccccccccchhcccccccHH
Confidence 344455666666778899999999888765433 1222322211100 0 1123345556
Q ss_pred hhhhHHHHHHHHHHhhhhhhhcccccCCHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcC
Q 000888 885 SIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKG 964 (1237)
Q Consensus 885 d~~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~ 964 (1237)
+|..++...+ +.. .. .... ..+.++|++++|++.+|+.|++.+.+++.+++.|.+.
T Consensus 427 df~~Al~~v~---ps~-----------~~--------~~~~--~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~ 482 (733)
T TIGR01243 427 DFMEALKMVE---PSA-----------IR--------EVLV--EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM 482 (733)
T ss_pred HHHHHHhhcc---ccc-----------cc--------hhhc--cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc
Confidence 6655544221 100 00 0001 1235789999999999999999999999999999887
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000888 965 QLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1044 (1237)
Q Consensus 965 ~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1044 (1237)
++. +++++|||||||||||++|+++|++++++|+.+.++++.++|+|+++..++.+|..|+..+|+||||||||.|++.
T Consensus 483 g~~-~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~ 561 (733)
T TIGR01243 483 GIR-PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPA 561 (733)
T ss_pred CCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhcc
Confidence 754 5589999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCC
Q 000888 1045 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKED 1122 (1237)
Q Consensus 1045 r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~ 1122 (1237)
+..........+++++|+..++++.. ..+++||+|||+++.||++++| ||++.|+|++|+.++|.+||+.++.+..
T Consensus 562 r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~ 639 (733)
T TIGR01243 562 RGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP 639 (733)
T ss_pred CCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC
Confidence 76554455678899999999999754 4689999999999999999998 9999999999999999999999998888
Q ss_pred CCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000888 1123 LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1202 (1237)
Q Consensus 1123 l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~ 1202 (1237)
+..++++..||+.|+||+|+||.++|++|+..++++.+.....+.... .. ........|+++||.+|+++++
T Consensus 640 ~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~---~~-----~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 640 LAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV---GE-----EEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc---cc-----ccccccCcccHHHHHHHHHHcC
Confidence 888899999999999999999999999999999998654332111000 00 0011235799999999999999
Q ss_pred cCccccccchhhhHHHHHHhcC
Q 000888 1203 ASVSSESVNMSELLQWNELYGE 1224 (1237)
Q Consensus 1203 pS~s~e~~~~~~lvkW~diyG~ 1224 (1237)
||++.+ .+..|.+|...+|.
T Consensus 712 ps~~~~--~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 712 PSVSKE--DMLRYERLAKELKR 731 (733)
T ss_pred CCCCHH--HHHHHHHHHHHhcc
Confidence 999876 35679999998874
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-49 Score=470.38 Aligned_cols=435 Identities=29% Similarity=0.456 Sum_probs=338.6
Q ss_pred CCCeEEEEcchhhhhcCC-----cchhhhHHHHHh----c-CCCcEEEEEeeccCCCccccCCCCCccccccCCcccccc
Q 000888 690 SCPFILFMKDAEKSIAGN-----SDSYSTFKSRLE----K-LPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALL 759 (1237)
Q Consensus 690 ~~p~ILfi~di~~~~~~~-----~~~~~~lk~~L~----~-l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~ 759 (1237)
.+|.||||.+.|-+...+ .+....+.-.|. + -.+++++||+++..++.
T Consensus 489 ~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~l---------------------- 546 (953)
T KOG0736|consen 489 CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDL---------------------- 546 (953)
T ss_pred cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccC----------------------
Confidence 678888888888644311 111112222221 2 23689999999988752
Q ss_pred cccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccC
Q 000888 760 DLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEG 839 (1237)
Q Consensus 760 d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaD 839 (1237)
-..+...|.-+|+|+.|++++|++||+..+.. ..+..++..-..+..+.|++-.|
T Consensus 547 ---------------------p~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~----~~~n~~v~~k~~a~~t~gfs~~~ 601 (953)
T KOG0736|consen 547 ---------------------PADIQSLFLHEIEVPALSEEQRLEILQWYLNH----LPLNQDVNLKQLARKTSGFSFGD 601 (953)
T ss_pred ---------------------CHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc----cccchHHHHHHHHHhcCCCCHHH
Confidence 23366678889999999999999999976644 45666677777788999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHhhhhcCCCCC-CcccccccchhhhhHHHHHHHHHHhhhhhhhcccccCCHHHHHH
Q 000888 840 LETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD-PDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEK 918 (1237)
Q Consensus 840 L~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~-~~~~l~l~~ed~~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~ 918 (1237)
|+.+.... +-++..++.......-+....+.. ......+++++|.+++..+|.-+ ..
T Consensus 602 L~~l~~~~---s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~f-------------------s~ 659 (953)
T KOG0736|consen 602 LEALVAHS---SLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEF-------------------SD 659 (953)
T ss_pred HHHHhcCc---hHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhh-------------------hh
Confidence 98875543 223222332222111111111111 22335678888887777554322 22
Q ss_pred HHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 000888 919 RLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF 998 (1237)
Q Consensus 919 ~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f 998 (1237)
.+--|..+.++|+||||++++|..+.+.|..|+++|++|..+ .++..|||||||||||||.+|||+|.++...|
T Consensus 660 ----aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVATEcsL~F 733 (953)
T KOG0736|consen 660 ----AIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVATECSLNF 733 (953)
T ss_pred ----hcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHhhceeeE
Confidence 222344558999999999999999999999999999999865 34446999999999999999999999999999
Q ss_pred EEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-hHHHHHHHHHHHHHhcCCcccCCccEE
Q 000888 999 INISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERIL 1077 (1237)
Q Consensus 999 i~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~~a~~~il~eLL~~ldgl~~~~~~~Vl 1077 (1237)
+.+..++|..+|+|++|++++.+|+.|+..+|||||+||+|.|.+.|+..++ ...+.+++.+||.++|++.......|+
T Consensus 734 lSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VF 813 (953)
T KOG0736|consen 734 LSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVF 813 (953)
T ss_pred EeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceE
Confidence 9999999999999999999999999999999999999999999999987554 458899999999999999876778999
Q ss_pred EEEecCCCCCCcHHHHh--hccccccCCCC-CHHHHHHHHHHHHhhCCCCChhhHHHHHHHcC-CCcHHHHHHHHHHHHH
Q 000888 1078 VLAATNRPFDLDEAVIR--RLPRRLMVNLP-DAPNRAKILQVILAKEDLSPDVDFDAIANMTD-GYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1078 VIaTTN~p~~Ld~aLlr--RFd~~I~v~~P-d~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~-GySgaDL~~L~~~Aa~ 1153 (1237)
|||+||+|+.|||+++| |||+.+++.++ +.+.+..+|+.+.++..+++++|+.+||+.+. .|+|+|+..||..|++
T Consensus 814 ViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l 893 (953)
T KOG0736|consen 814 VIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAML 893 (953)
T ss_pred EEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHH
Confidence 99999999999999999 99999999876 57788899999999999999999999999986 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 000888 1154 RPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1208 (1237)
Q Consensus 1154 ~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e 1208 (1237)
.|++|.+........ +..........|+|+||.+|.++++||+++.
T Consensus 894 ~AikR~i~~ie~g~~---------~~~e~~~~~v~V~~eDflks~~~l~PSvS~~ 939 (953)
T KOG0736|consen 894 AAIKRTIHDIESGTI---------SEEEQESSSVRVTMEDFLKSAKRLQPSVSEQ 939 (953)
T ss_pred HHHHHHHHHhhhccc---------cccccCCceEEEEHHHHHHHHHhcCCcccHH
Confidence 999987655433211 0011122345799999999999999999865
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-45 Score=409.43 Aligned_cols=284 Identities=40% Similarity=0.710 Sum_probs=256.9
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000888 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1237)
Q Consensus 928 ~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~ 1007 (1237)
..+.+.|+||.|+.+.|+.|++.|..|+..|+.|. ++.+|.++||++||||||||+||+|+|.+++..|+.|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 34579999999999999999999999999999996 5689999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCC--ccEEEEEecCCC
Q 000888 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT--ERILVLAATNRP 1085 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~--~~VlVIaTTN~p 1085 (1237)
++|-|++|+.++-+|++|+.++|++|||||||.|+.+|++..+|++.+++..+||++|||+..... ..|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999876422 349999999999
Q ss_pred CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1086 FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1165 (1237)
Q Consensus 1086 ~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~ 1165 (1237)
|+||++++|||..+|++++|+.+.|..+|+..+....+.++++++.||+.++||+|+||.++|++|.+.++||.+.....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655433
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcC
Q 000888 1166 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGE 1224 (1237)
Q Consensus 1166 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~ 1224 (1237)
......+.. ... .|++++||+.|+.+++||++.. .+.-+.+|.+.||.
T Consensus 443 ~ei~~lakE--------~~~-~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQLAKE--------EPK-MPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhhhhh--------ccc-cccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 222111111 112 6899999999999999999754 46779999999996
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-44 Score=433.24 Aligned_cols=455 Identities=32% Similarity=0.482 Sum_probs=363.2
Q ss_pred ceeeccCCCCCCCCCCC--CCCCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc
Q 000888 631 IGVRFDKPIPDGVDLGG--QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS 708 (1237)
Q Consensus 631 vgV~Fd~~~~~~~~l~~--~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~~ 708 (1237)
-||.+++|+++|+++.+ .+..+..|+...+..++++|+++ .++.+..+|+-+.. ..|.|+|+||++.+.....
T Consensus 19 ~~v~~~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~ 93 (494)
T COG0464 19 KGVLLHGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGE--SELRLRELFEEAEK---LAPSIIFIDEIDALAPKRS 93 (494)
T ss_pred CCceeeCCCCCchhHHHHHHHhccCcccccCcchhhhhhhhH--HHHHHHHHHHHHHH---hCCCeEeechhhhcccCcc
Confidence 37899999999999441 11114455888999999999999 88899999999888 8889999999999887332
Q ss_pred c----hhhhHHHHH----hcC-CCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchH
Q 000888 709 D----SYSTFKSRL----EKL-PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPK 779 (1237)
Q Consensus 709 ~----~~~~lk~~L----~~l-~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~ 779 (1237)
. ....+...| ..+ .+.|++||++++.+..+++ +++|||
T Consensus 94 ~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~a-------~~~~~~-------------------------- 140 (494)
T COG0464 94 SDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDGLDPA-------KRRPGR-------------------------- 140 (494)
T ss_pred ccccchhhHHHHHHHHhcccccCCceEEEeecCCccccChh-------HhCccc--------------------------
Confidence 2 222233333 222 4569999999999888877 788888
Q ss_pred HHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHH
Q 000888 780 ATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIV 859 (1237)
Q Consensus 780 ~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV 859 (1237)
|++++++.+|+.+.+++|++.+... +....+......+..+.|+.++|+..+|.++..
T Consensus 141 --------~~~~~~~~~~~~~~~~ei~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~---------- 198 (494)
T COG0464 141 --------FDREIEVNLPDEAGRLEILQIHTRL----MFLGPPGTGKTLAARTVGKSGADLGALAKEAAL---------- 198 (494)
T ss_pred --------cceeeecCCCCHHHHHHHHHHHHhc----CCCcccccHHHHHHhcCCccHHHHHHHHHHHHH----------
Confidence 8899999999999999999988754 333335566666778889999999887764332
Q ss_pred HHHHHhhhhcCCCCCCcccccccchhhhhHHHHHHHHHHhhhhhhhcccccCCHHHHHHHHhcCcCCCCCCCccchhccc
Q 000888 860 GWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGA 939 (1237)
Q Consensus 860 ~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vtf~dI~G 939 (1237)
.+..+.+ ........++.+++..++..+. .. ..+-.....++|.+++|
T Consensus 199 -~~~~r~~-----~~~~~~~~~~~~~~~~~l~~~~-----------------~~---------~~~~~~~~~v~~~digg 246 (494)
T COG0464 199 -RELRRAI-----DLVGEYIGVTEDDFEEALKKVL-----------------PS---------RGVLFEDEDVTLDDIGG 246 (494)
T ss_pred -HHHHhhh-----ccCcccccccHHHHHHHHHhcC-----------------cc---------cccccCCCCcceehhhc
Confidence 1111111 0011222233333333222110 00 12233455789999999
Q ss_pred cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHH
Q 000888 940 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVK 1019 (1237)
Q Consensus 940 le~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~ 1019 (1237)
++.+++.+++.+..++.+++.|.+.+ .+++.++|||||||||||+||+|+|++++.+|+.++.++++++|+|+++++++
T Consensus 247 l~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir 325 (494)
T COG0464 247 LEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIR 325 (494)
T ss_pred HHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHH
Confidence 99999999999999999999988755 45568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHh--hcc
Q 000888 1020 AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLP 1097 (1237)
Q Consensus 1020 ~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd 1097 (1237)
.+|..|++.+||||||||||.|+..+..... ....+++++++..|+++.. ..+|+||++||+|+.+|++++| ||+
T Consensus 326 ~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~a~lR~gRfd 402 (494)
T COG0464 326 ELFEKARKLAPSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDPALLRPGRFD 402 (494)
T ss_pred HHHHHHHcCCCcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCHhhcccCccc
Confidence 9999999999999999999999988864332 2237899999999999865 4679999999999999999999 999
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhCCC--CChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000888 1098 RRLMVNLPDAPNRAKILQVILAKEDL--SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGK 1175 (1237)
Q Consensus 1098 ~~I~v~~Pd~eeR~eILk~~L~~~~l--~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~ 1175 (1237)
..++|++|+.++|.+||+.++..... ..++++..+++.++||+|+||..+|++|++.++++..
T Consensus 403 ~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~--------------- 467 (494)
T COG0464 403 RLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR--------------- 467 (494)
T ss_pred eEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc---------------
Confidence 99999999999999999999985543 5789999999999999999999999999999888732
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHhccCcc
Q 000888 1176 PAPALSGCADIRPLNMDDFKYAHERVCASVS 1206 (1237)
Q Consensus 1176 ~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s 1206 (1237)
...++++||.+|++++.|++.
T Consensus 468 ----------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 ----------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred ----------cCCccHHHHHHHHHhcCCCCC
Confidence 257999999999999999975
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-44 Score=396.80 Aligned_cols=248 Identities=40% Similarity=0.696 Sum_probs=231.2
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000888 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1237)
Q Consensus 928 ~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~ 1007 (1237)
..+.++++||||++++.++|++.|.+|+.+|++|.+.|+ .||+|||||||||||||+||+|+|++.++.|+++..++|+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 345799999999999999999999999999999999986 4569999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC
Q 000888 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1237)
.+|+|+....++.+|..|+.++||||||||||++.++|... +......+.+-+||.+|||+.. ..+|-||++||++
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~ 300 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRP 300 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCc
Confidence 99999999999999999999999999999999999988653 3445567788889999999965 5789999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e 1163 (1237)
+.|||+++| |||+.|+|++|+.+.|.+||+.+.+++.+.+++|++.||+.++|+||+||+++|.+|.+.|+|+
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~----- 375 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE----- 375 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh-----
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccC
Q 000888 1164 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1204 (1237)
Q Consensus 1164 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS 1204 (1237)
....+|++||.+|+++|...
T Consensus 376 ---------------------~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 376 ---------------------RRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ---------------------ccCeecHHHHHHHHHHHHhc
Confidence 23579999999999998654
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=394.26 Aligned_cols=299 Identities=33% Similarity=0.577 Sum_probs=259.7
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000888 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1237)
Q Consensus 928 ~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~ 1007 (1237)
+...++|.||||++....+|.+++.. +.+|+.|...|+ .|++|||||||||||||+||+|||.+++.||+.|+..+++
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv 260 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV 260 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh
Confidence 33478999999999999999999988 999999999886 5669999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccC--CccEEEEEecCCC
Q 000888 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--TERILVLAATNRP 1085 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~--~~~VlVIaTTN~p 1085 (1237)
+.+.|++|+.++.+|+.|+...|||+||||||.+.++|.+ ...+..++++.+|++.||++.... +.+|+||++||+|
T Consensus 261 SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 261 SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999999876 555677899999999999987652 4789999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e 1163 (1237)
+.||++++| ||++.|.+..|+..+|.+||+.++++..+..++|+..||+.|.||.|+||.+||.+|+..+++|++...
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~ 419 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQS 419 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred HH--HHHH---------HHhcC-------------------------CCCCCCCCCCCCccccHHHHHHHHHHhccCccc
Q 000888 1164 KK--ERAA---------AMAEG-------------------------KPAPALSGCADIRPLNMDDFKYAHERVCASVSS 1207 (1237)
Q Consensus 1164 ~~--~~~~---------a~~e~-------------------------~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~ 1207 (1237)
.. .... ...+. .+.+........-.|.++||.+|+..|+||..+
T Consensus 420 ~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakR 499 (802)
T KOG0733|consen 420 SSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKR 499 (802)
T ss_pred cCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhc
Confidence 31 0000 00000 000000011223468999999999999999999
Q ss_pred cccchhhhHHHHHHhcCCCCcc
Q 000888 1208 ESVNMSELLQWNELYGEGGSRR 1229 (1237)
Q Consensus 1208 e~~~~~~lvkW~diyG~~gsrk 1229 (1237)
+.....|-+.|+|++|...-|.
T Consensus 500 EGF~tVPdVtW~dIGaL~~vR~ 521 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALEEVRL 521 (802)
T ss_pred ccceecCCCChhhcccHHHHHH
Confidence 9999999999999998765553
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-40 Score=384.46 Aligned_cols=439 Identities=26% Similarity=0.406 Sum_probs=333.2
Q ss_pred eeeccCCCCCCCC-----CCCCCCCCC-ccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc
Q 000888 632 GVRFDKPIPDGVD-----LGGQCEGGH-GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA 705 (1237)
Q Consensus 632 gV~Fd~~~~~~~~-----l~~~c~~~~-~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~ 705 (1237)
.++.++|.|.||+ +.+.-+-++ .|++.+..-.|..-..| --+..++..|..... .+|.||++||+|-+++
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e-~iQk~l~~vfse~~~---~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE-KIQKFLNNVFSEALW---YAPSIIVLDDLDCLAS 508 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH-HHHHHHHHHHHHHHh---hCCcEEEEcchhhhhc
Confidence 5788999999999 345556555 88988887666644433 123345555555555 9999999999999997
Q ss_pred ------CCcchhh-hHHHHH-------hcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCcccccc
Q 000888 706 ------GNSDSYS-TFKSRL-------EKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 771 (1237)
Q Consensus 706 ------~~~~~~~-~lk~~L-------~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~ 771 (1237)
++...+. .+-..| .+....|.+|++-.......|- |--
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~-------L~s--------------------- 560 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL-------LVS--------------------- 560 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh-------hcC---------------------
Confidence 2222221 111111 2334467899987765532222 111
Q ss_pred ccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccc
Q 000888 772 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 851 (1237)
Q Consensus 772 ~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls 851 (1237)
..+|..++.++.|+.++|.+||+....+-.- ....+++.. .+.+|-||...||.-+
T Consensus 561 -------------~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~-~~~~~dLd~--ls~~TEGy~~~DL~if-------- 616 (952)
T KOG0735|consen 561 -------------PLLFQIVIALPAPAVTRRKEILTTIFSKNLS-DITMDDLDF--LSVKTEGYLATDLVIF-------- 616 (952)
T ss_pred -------------ccceEEEEecCCcchhHHHHHHHHHHHhhhh-hhhhHHHHH--HHHhcCCccchhHHHH--------
Confidence 1258788889999999999999854433110 112223333 5667888888888332
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHHHHHHHhhhhhhhcccccCCHHHHHHHHhcCcCCCCCCC
Q 000888 852 NESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIG 931 (1237)
Q Consensus 852 ~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~ 931 (1237)
++.+|-.|.- +-+.+....++.++|++++..+-+.. +.++---...+
T Consensus 617 ---VeRai~~a~l-------eris~~~klltke~f~ksL~~F~P~a-----------------------LR~ik~~k~tg 663 (952)
T KOG0735|consen 617 ---VERAIHEAFL-------ERISNGPKLLTKELFEKSLKDFVPLA-----------------------LRGIKLVKSTG 663 (952)
T ss_pred ---HHHHHHHHHH-------HHhccCcccchHHHHHHHHHhcChHH-----------------------hhhccccccCC
Confidence 3334333331 11122333788888888877554321 11111111224
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~ 1011 (1237)
+.|+||+|+.++|+.|.+.+++|.++|..|.+-.++-+ .|||||||||||||+||.|+|...++.|+.+..+++.++|+
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~-~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR-TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccc-cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 78999999999999999999999999999998765444 79999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHH
Q 000888 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEA 1091 (1237)
Q Consensus 1012 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~a 1091 (1237)
|.+|+.++.+|+.|+...|||||+||+|.+.++|+.... ....++.|+||++|||... -..|.|+|+|.+|+.+||+
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsT-GVTDRVVNQlLTelDG~Eg--l~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDST-GVTDRVVNQLLTELDGAEG--LDGVYILAATSRPDLIDPA 819 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCC-CchHHHHHHHHHhhccccc--cceEEEEEecCCccccCHh
Confidence 999999999999999999999999999999999875432 3457899999999999865 3679999999999999999
Q ss_pred HHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1092 VIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1092 Llr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e 1163 (1237)
++| |+|+.++-+.|+..+|.+|++.+.......+++|++.+|.+|+||+|+||..|+..|.+.++++++...
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 999 999999999999999999999999888888999999999999999999999999999999999876543
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-41 Score=363.27 Aligned_cols=297 Identities=38% Similarity=0.666 Sum_probs=254.6
Q ss_pred cCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000888 924 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1237)
Q Consensus 924 ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~ 1003 (1237)
-|-.+.+.+.|+|+.|++..|+.|++.|.+|++.|.+|... ++|.++|||||||||||++||+|+|.+.+..|+.++.
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSS 199 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 199 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeeh
Confidence 34456678999999999999999999999999999999743 6788999999999999999999999999999999999
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecC
Q 000888 1004 SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1237)
Q Consensus 1004 seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1237)
++|+++|.|++|+.++++|++|+.+.|+||||||||.+++.|. ..+.++.+++..+||++|.|+.. ++..|+|+++||
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~-d~~gvLVLgATN 277 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGN-DNDGVLVLGATN 277 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhcccc-CCCceEEEecCC
Confidence 9999999999999999999999999999999999999998874 46778999999999999999864 568999999999
Q ss_pred CCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCC-CCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1084 RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED-LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1162 (1237)
Q Consensus 1084 ~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~-l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~ 1162 (1237)
-||.||.+++|||+++|++++|+...|..+|+.++.... ...+.|+.+|+++|+||+|+||.-+++.|.+.++|++...
T Consensus 278 iPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 278 IPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred CchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhh
Confidence 999999999999999999999999999999999987654 3367899999999999999999999999999999987654
Q ss_pred HHHHHHHH-----HhcCCCCCCCCCC---------------CCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHh
Q 000888 1163 EKKERAAA-----MAEGKPAPALSGC---------------ADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELY 1222 (1237)
Q Consensus 1163 e~~~~~~a-----~~e~~~~~~~~~~---------------~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diy 1222 (1237)
....+.-. .-.....|+..+. .-..+|||.||..++...+|.+..+. ..-..+|.+.|
T Consensus 358 thFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~D--l~k~~~Ft~dF 435 (439)
T KOG0739|consen 358 THFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDD--LLKHEKFTEDF 435 (439)
T ss_pred hhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhh
Confidence 43321110 0001111111110 11247999999999999999998774 45688999999
Q ss_pred cCCC
Q 000888 1223 GEGG 1226 (1237)
Q Consensus 1223 G~~g 1226 (1237)
|++|
T Consensus 436 GqEg 439 (439)
T KOG0739|consen 436 GQEG 439 (439)
T ss_pred ccCC
Confidence 9986
No 12
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=381.34 Aligned_cols=428 Identities=20% Similarity=0.233 Sum_probs=324.7
Q ss_pred eeeccCCCCCCCCCC--------CCCCCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhcc-----CCCeEEEEc
Q 000888 632 GVRFDKPIPDGVDLG--------GQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESR-----SCPFILFMK 698 (1237)
Q Consensus 632 gV~Fd~~~~~~~~l~--------~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~-----~~p~ILfi~ 698 (1237)
|++.-+||||||||- |--+. =.--|--.|+|+||| ++.-|+.||.-+.++-+ .+==||.||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNAreP----KIVNGPeIL~KYVGe--SE~NvR~LFaDAEeE~r~~g~~SgLHIIIFD 331 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREP----KIVNGPEILNKYVGE--SEENVRKLFADAEEEQRRLGANSGLHIIIFD 331 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCC----cccCcHHHHHHhhcc--cHHHHHHHHHhHHHHHHhhCccCCceEEEeh
Confidence 677778999999953 21111 122367789999999 99999999999876544 334599999
Q ss_pred chhhhhc------CCcchhhhHHHHH-hcCCC-----cEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCc
Q 000888 699 DAEKSIA------GNSDSYSTFKSRL-EKLPD-----KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDS 766 (1237)
Q Consensus 699 di~~~~~------~~~~~~~~lk~~L-~~l~g-----~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~ 766 (1237)
|||.+.- |+...++.+...| .+.+| ||+|||+|||.|-+||| |-||||
T Consensus 332 EiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEA-------LLRPGR------------- 391 (744)
T KOG0741|consen 332 EIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEA-------LLRPGR------------- 391 (744)
T ss_pred hhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHH-------hcCCCc-------------
Confidence 9999773 6788898888877 44555 99999999999966666 666666
Q ss_pred cccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCccccccc
Q 000888 767 FGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 846 (1237)
Q Consensus 767 ~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~ 846 (1237)
|++++||+|||+++|++||++|+.+|+++..+..|++.-+.+..++||+||+|+++
T Consensus 392 ---------------------lEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAElegl--- 447 (744)
T KOG0741|consen 392 ---------------------LEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGL--- 447 (744)
T ss_pred ---------------------eEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999877
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCC----CCCcccccccchhhhhHHHHHHHHHHhhhhhhhcccccCCHHHHHHHHhc
Q 000888 847 DQSLTNESAEKIVGWALSHHLMQNPE----ADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLA 922 (1237)
Q Consensus 847 d~~ls~~~ie~iV~~A~s~~l~~~~~----p~~~~~l~l~~ed~~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~ 922 (1237)
+..+..+|++|++..... +....++.++++||.+++..+++.|. +++++++..+..
T Consensus 448 --------VksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG------------~see~l~~~~~~ 507 (744)
T KOG0741|consen 448 --------VKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG------------ISEEDLERFVMN 507 (744)
T ss_pred --------HHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC------------CCHHHHHHHHhC
Confidence 445566788888876632 33458899999999999996665554 678899999999
Q ss_pred CcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 923 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 923 ~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
+++.+.... ..+.+.-..++. +.+.++ ..+..++||+||||+|||+||..+|...++||+.+-
T Consensus 508 Gmi~~g~~v---------~~il~~G~llv~-qvk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii 570 (744)
T KOG0741|consen 508 GMINWGPPV---------TRILDDGKLLVQ-QVKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKII 570 (744)
T ss_pred CceeecccH---------HHHHhhHHHHHH-Hhhccc-------cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEe
Confidence 999876431 222222222222 122222 456679999999999999999999999999999965
Q ss_pred cc-ccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEe
Q 000888 1003 MS-SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1081 (1237)
Q Consensus 1003 ~s-eL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaT 1081 (1237)
.+ ++++........+++.+|+.|++++-+||++|+|++|+.. .+....+.+.+++.|++++...+++ +++++|++|
T Consensus 571 Spe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--vpIGPRfSN~vlQaL~VllK~~ppk-g~kLli~~T 647 (744)
T KOG0741|consen 571 SPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--VPIGPRFSNLVLQALLVLLKKQPPK-GRKLLIFGT 647 (744)
T ss_pred ChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--cccCchhhHHHHHHHHHHhccCCCC-CceEEEEec
Confidence 54 5555444445568999999999999999999999999843 3455678899999999999998765 579999999
Q ss_pred cCCCCCCcH-HHHhhccccccCCCCCH-HHHHHHHHHHHhhCCCCChhhHHHHHHHc----CCCcHHHHHHHHHHHHH
Q 000888 1082 TNRPFDLDE-AVIRRLPRRLMVNLPDA-PNRAKILQVILAKEDLSPDVDFDAIANMT----DGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1082 TN~p~~Ld~-aLlrRFd~~I~v~~Pd~-eeR~eILk~~L~~~~l~~d~dl~~LA~~T----~GySgaDL~~L~~~Aa~ 1153 (1237)
|++...|.+ .+...|+..++++..+. ++..+++... ++..+.+...++... .+.-...|..|+++|..
T Consensus 648 TS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~----n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 648 TSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL----NIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred ccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc----cCCCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 998877776 57779999999976654 6666666543 333333333333322 22224555566665553
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.6e-36 Score=359.57 Aligned_cols=411 Identities=20% Similarity=0.342 Sum_probs=297.9
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHH---HhcCCCcEEEEEeeccCCCccccCCCCCccccccC
Q 000888 676 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR---LEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 752 (1237)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~~~~~~~lk~~---L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~g 752 (1237)
.+++|- .+......+|.|+.++|+|.++. +......|+.. +...+..+||++.....
T Consensus 67 p~~al~-~i~~~~~~~~~~~vl~d~h~~~~-~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~~------------------ 126 (489)
T CHL00195 67 PLQALE-FIEKLTPETPALFLLKDFNRFLN-DISISRKLRNLSRILKTQPKTIIIIASELNI------------------ 126 (489)
T ss_pred HHHHHH-HHHhcCCCCCcEEEEecchhhhc-chHHHHHHHHHHHHHHhCCCEEEEEcCCCCC------------------
Confidence 555663 44444445689999999999883 33333334332 23345677777764322
Q ss_pred CcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhc
Q 000888 753 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGR 832 (1237)
Q Consensus 753 r~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~ 832 (1237)
|. .|.+.+ ..++++||+.++..++++..... . .
T Consensus 127 -----------p~-----------------el~~~~-~~~~~~lP~~~ei~~~l~~~~~~----~--------------~ 159 (489)
T CHL00195 127 -----------PK-----------------ELKDLI-TVLEFPLPTESEIKKELTRLIKS----L--------------N 159 (489)
T ss_pred -----------CH-----------------HHHhce-eEEeecCcCHHHHHHHHHHHHHh----c--------------C
Confidence 11 233334 68899999999999988644321 0 0
Q ss_pred CCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHHHHHHHhhhhhhhcccccCC
Q 000888 833 SGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVT 912 (1237)
Q Consensus 833 ~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~lq~i~~~~k~~k~~~k~~v~ 912 (1237)
..++..+++.++.....++...++.++..++..+ -.++.+++...+.....+ +.
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~k~q~--------------~~ 213 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIATY------------KTIDENSIPLILEEKKQI--------------IS 213 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc------------CCCChhhHHHHHHHHHHH--------------Hh
Confidence 1133344445555555566666666654443211 112333332222211110 00
Q ss_pred HHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000888 913 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 992 (1237)
Q Consensus 913 ~~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~ 992 (1237)
. .+++.......+|++++|++.+|+.|.+..... .......++ .++++||||||||||||++|+++|+
T Consensus 214 ~--------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 214 Q--------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred h--------hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHH
Confidence 0 122333334678999999999999998765321 122233443 4568999999999999999999999
Q ss_pred HhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccC
Q 000888 993 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1072 (1237)
Q Consensus 993 eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~ 1072 (1237)
+++.+|+.++++.+.++|+|+++..++++|..|+..+||||||||||.++..+....+.....+++.+|+..++..
T Consensus 282 e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---- 357 (489)
T CHL00195 282 DWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---- 357 (489)
T ss_pred HhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----
Confidence 9999999999999999999999999999999999999999999999999876554455566788999998888752
Q ss_pred CccEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCC--ChhhHHHHHHHcCCCcHHHHHHHH
Q 000888 1073 TERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS--PDVDFDAIANMTDGYSGSDLKNLC 1148 (1237)
Q Consensus 1073 ~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~--~d~dl~~LA~~T~GySgaDL~~L~ 1148 (1237)
..+++||||||.++.||++++| ||++.++|+.|+.++|.+||+.++.+.... .+.++..||+.|+||+|+||.++|
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv 437 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI 437 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence 4679999999999999999998 999999999999999999999999886433 478899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHh
Q 000888 1149 VTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELY 1222 (1237)
Q Consensus 1149 ~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diy 1222 (1237)
.+|+..++.+ .++++.+||..|++++.|......-....+++|-..+
T Consensus 438 ~eA~~~A~~~---------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 438 IEAMYIAFYE---------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHHc---------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 9998876542 2569999999999999998765555567899998753
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=356.80 Aligned_cols=271 Identities=38% Similarity=0.594 Sum_probs=243.5
Q ss_pred CCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000888 926 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1005 (1237)
Q Consensus 926 ~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~se 1005 (1237)
|.....++|+|+.|.++.|++|.|.|.. ++.|+.|.+.+- +-|+||||+||||||||+||||+|.+.+.||+....++
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGG-KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGG-KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccC-cCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 3334478999999999999999999985 899999998774 44599999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC
Q 000888 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1237)
Q Consensus 1006 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1237)
+-..++|...+.++.+|..|++.+||||||||||.+.++|.....+ ..+..+|+||..|||+.. +..|+||++||.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~q--NeGiIvigATNfp 449 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQ--NEGIIVIGATNFP 449 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCc--CCceEEEeccCCh
Confidence 9999999999999999999999999999999999999888655444 889999999999999965 5789999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e 1163 (1237)
+.||+++.| |||+.|.|+.||...|.+||+.++.+..+..++|+..||+-|.||+|+||.||++.|+..|...
T Consensus 450 e~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d----- 524 (752)
T KOG0734|consen 450 EALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD----- 524 (752)
T ss_pred hhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc-----
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcCCCC
Q 000888 1164 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGS 1227 (1237)
Q Consensus 1164 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~gs 1227 (1237)
....|+|.|++.|.+++.....+......+.-+-.-.|.|+|-
T Consensus 525 ---------------------ga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GH 567 (752)
T KOG0734|consen 525 ---------------------GAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGH 567 (752)
T ss_pred ---------------------CcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCc
Confidence 2246999999999999988887776666666666666777764
No 15
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-35 Score=339.84 Aligned_cols=280 Identities=46% Similarity=0.799 Sum_probs=252.4
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
...+.|+|+.|++.+|+.+.+.+.+|+.++.+|. +++.|++++||+||||+|||+|++|||.|+++.|..++++.|.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~--glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL--GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhh--ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 3468999999999999999999999999999997 45678899999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCC
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1088 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~L 1088 (1237)
+|+|+.++.++.+|..|+..+|+||||||||.++..| .+..++..+++..+++..+++.......+|+||+|||+|+.+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 9999999999999999999999999999999999999 667788889999999999999998888899999999999999
Q ss_pred cHHHHhhccccccCCCCCHHHHHHHHHHHHhhCC-CCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1089 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED-LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 1167 (1237)
Q Consensus 1089 d~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~-l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~ 1167 (1237)
|++++|||..++++++|+.+.|..+|+.++.+.+ ...+.+++.|+++|+||+++||.++|..|++..++++......+
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~- 382 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE- 382 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh-
Confidence 9999999999999999999999999999998873 33678999999999999999999999999999988754320100
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcCCC
Q 000888 1168 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1226 (1237)
Q Consensus 1168 ~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~g 1226 (1237)
.......++++..||+.|++.+.++++.+. ..-+.+|+..+|..+
T Consensus 383 ------------~~~~~~~r~i~~~df~~a~~~i~~~~s~~~--l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 383 ------------FIDADKIRPITYPDFKNAFKNIKPSVSLEG--LEKYEKWDKEFGSSE 427 (428)
T ss_pred ------------hcchhccCCCCcchHHHHHHhhccccCccc--cchhHHHhhhhcccc
Confidence 012235689999999999999999999774 455899999999764
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-34 Score=306.58 Aligned_cols=245 Identities=33% Similarity=0.594 Sum_probs=225.0
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+..+++||+|++...++|.+.+.+|+.+++.|.+.++ +|++|+|+|||||||||.+|+|.|...+..|+.+..+.++.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45678999999999999999999999999999999886 56699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1237)
.|+|...+.++..|..|+..+|+||||||+|.+..+|... .......+.+-+||.++||+.+ ..++-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss--~~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC--ccceEEEeeccccc
Confidence 9999999999999999999999999999999998887643 2233446677789999999976 46899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1164 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~ 1164 (1237)
.|||+++| |+++.|+||.|+.+.|..|++.+.+++.+.+++++++||+.|++|.|++++++|.+|.+.++|+
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr------ 395 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRR------ 395 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhc------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000888 1165 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1202 (1237)
Q Consensus 1165 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~ 1202 (1237)
....++.+||.+++.+|+
T Consensus 396 --------------------~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 396 --------------------GATEVTHEDFMEGILEVQ 413 (424)
T ss_pred --------------------ccccccHHHHHHHHHHHH
Confidence 235699999999998884
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=300.11 Aligned_cols=250 Identities=35% Similarity=0.601 Sum_probs=228.1
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000888 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1237)
Q Consensus 930 ~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~ 1009 (1237)
++.+++-++|++...+.+++.+.+|.++|++|...++..| +|+|||||||||||.||+|+|+...+.|++++.++++.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 4678999999999999999999999999999999998877 899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCC
Q 000888 1010 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1087 (1237)
Q Consensus 1010 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1087 (1237)
|+|+....++.+|.+|+.++|+|||+||||.+...|.. .+......+.+-+|+.++|++.. ..++-||++||+.+-
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--tknikvimatnridi 298 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRIDI 298 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc--ccceEEEEecccccc
Confidence 99999999999999999999999999999999876642 23334456777789999999965 468999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1088 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1165 (1237)
Q Consensus 1088 Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~ 1165 (1237)
||++++| |+|+.|+|++|+.+.|.+||+.+-+++++...+++..+|....|.+|++++.+|.+|.+.++|+-
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------ 372 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------ 372 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh------
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998861
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 000888 1166 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1208 (1237)
Q Consensus 1166 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e 1208 (1237)
...+|.+||+-|+.++..-.++.
T Consensus 373 --------------------rvhvtqedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 373 --------------------RVHVTQEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred --------------------hccccHHHHHHHHHHHHhccccc
Confidence 14699999999999986554433
No 18
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=300.60 Aligned_cols=248 Identities=37% Similarity=0.625 Sum_probs=227.7
Q ss_pred CCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000888 926 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1005 (1237)
Q Consensus 926 ~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~se 1005 (1237)
+...+++++.|++|++-.|+++++.+.+|+.+.++|.+-++. |++|||||||||||||+||+|+|+...+.|+++..++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 444568999999999999999999999999999999998865 5599999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHHHHHHhcCCcccCCccEEEEEecC
Q 000888 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1237)
Q Consensus 1006 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1237)
++.+|.|+....++.+|+.|+..+|+||||||||.+..+|... +......+++-+|+.+|||+.. ..++-||++||
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatn 302 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATN 302 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecC
Confidence 9999999999999999999999999999999999999887643 3445667899999999999965 47899999999
Q ss_pred CCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 000888 1084 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 1161 (1237)
Q Consensus 1084 ~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~ 1161 (1237)
+.+.|||+++| |+++.|+|++|+..+++-+|..+..++.+.+++|++.+..+-+..+++||..+|++|.+.++|+.
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n-- 380 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN-- 380 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc--
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999861
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000888 1162 KEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1202 (1237)
Q Consensus 1162 ~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~ 1202 (1237)
.-.+...||++|...+.
T Consensus 381 ------------------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 ------------------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ------------------------ceeeeHHHHHHHHHhhc
Confidence 13578899999988763
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=341.46 Aligned_cols=252 Identities=42% Similarity=0.693 Sum_probs=229.5
Q ss_pred CCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000888 927 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1006 (1237)
Q Consensus 927 ~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL 1006 (1237)
..+.+++|.|+.|.+++|++|.|+|.. |++|+.|.+.+. +.|+|+||+||||||||.||+|+|.|.+.||+.++.+++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGA-KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCC-cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 345679999999999999999999985 999999999884 566999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC---CCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecC
Q 000888 1007 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1237)
Q Consensus 1007 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~---~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1237)
+..+.|.....++.+|..|+...||||||||||.+...|. ..+.+......+|+|+..||++... ..|+|+|+||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 9999999999999999999999999999999999998884 3345566678999999999999654 7799999999
Q ss_pred CCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 000888 1084 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 1160 (1237)
Q Consensus 1084 ~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil 1160 (1237)
+++.||++++| |||+.|+++.|+...|.+|++.++.+..+. +++++..||.+|.||+|+||.++|++|+..+.|+
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~-- 536 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK-- 536 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh--
Confidence 99999999999 999999999999999999999999988885 7889999999999999999999999999988875
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 000888 1161 EKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1208 (1237)
Q Consensus 1161 ~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e 1208 (1237)
....|+..||.+|++++.......
T Consensus 537 ------------------------~~~~i~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731|consen 537 ------------------------GLREIGTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred ------------------------ccCccchhhHHHHHHHHhcccccc
Confidence 336799999999999887776443
No 20
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-33 Score=339.96 Aligned_cols=382 Identities=21% Similarity=0.258 Sum_probs=277.4
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc-----C-CcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCcccc
Q 000888 676 LINTLFEVVFSESRSCPFILFMKDAEKSIA-----G-NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFT 749 (1237)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~~~-----~-~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~ 749 (1237)
+=++|..|+.++.+..++||||||||++++ | ++|+.|+|||+|.+ |.+.||||||..+|
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~~EY------------- 311 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEY------------- 311 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccHHHH-------------
Confidence 446677777777778899999999999997 3 48999999999955 99999999999986
Q ss_pred ccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHH
Q 000888 750 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTV 829 (1237)
Q Consensus 750 r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~v 829 (1237)
|+.++.|.||.||| ++|.|.+|+.+..+.||+...++ +..+|+|.+...|
T Consensus 312 -------------------------Rk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~----yE~hH~V~i~D~A 361 (786)
T COG0542 312 -------------------------RKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKER----YEAHHGVRITDEA 361 (786)
T ss_pred -------------------------HHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHH----HHHccCceecHHH
Confidence 34455699999999 99999999999999999988755 8899999999999
Q ss_pred hhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCccc------------ccccchhhhhHHHHHHHHH
Q 000888 830 LGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDAR------------LVLSCESIQYGIGIFQAIQ 897 (1237)
Q Consensus 830 L~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~------------l~l~~ed~~~al~~lq~i~ 897 (1237)
+. .++.|+..|+.++.+++++|+.+...++...+... .|..-.. ..+..+.-+.....+..+.
T Consensus 362 l~----aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~ 436 (786)
T COG0542 362 LV----AAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEII 436 (786)
T ss_pred HH----HHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 98 57999999999999999999999999987777655 4431000 0000000001111111100
Q ss_pred Hh----hhhhhhcccccCCHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhh------c---C
Q 000888 898 NE----SKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC------K---G 964 (1237)
Q Consensus 898 ~~----~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~------k---~ 964 (1237)
.- ...+...+...++.+++.. +++.++..+...+.-.+..-+-++.+.|.+.|..+-....... + .
T Consensus 437 ~~~~~~~~~~~~~~~~~v~~~~Ia~-vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~ 515 (786)
T COG0542 437 KLKEGRIPELEKELEAEVDEDDIAE-VVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLG 515 (786)
T ss_pred HHhhhhhhhHHHHHhhccCHHHHHH-HHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCC
Confidence 00 0000000000155566655 5556655544333333333333333333333333322222211 1 2
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccc-----ccccccccHHHH-----HHHHHHHHhcCCc
Q 000888 965 QLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI-----TSKWFGEGEKYV-----KAVFSLASKIAPS 1031 (1237)
Q Consensus 965 ~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~~fi~Id~seL-----~s~~~G~se~~I-----~~lF~~A~k~~Ps 1031 (1237)
..++|..++||.||+|+|||.||+++|..+. -.++++||+++ +++.+|.++.|+ ..+.+..++.++|
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PyS 595 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYS 595 (786)
T ss_pred CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCe
Confidence 3467778899999999999999999999994 89999999998 567788888877 4478888899999
Q ss_pred EEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCC-------ccEEEEEecCCC-------------------
Q 000888 1032 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT-------ERILVLAATNRP------------------- 1085 (1237)
Q Consensus 1032 ILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~-------~~VlVIaTTN~p------------------- 1085 (1237)
||++|||+ .++..+++.||+.+|.....++ .+.+||+|||.-
T Consensus 596 ViLlDEIE------------KAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~ 663 (786)
T COG0542 596 VILLDEIE------------KAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEAL 663 (786)
T ss_pred EEEechhh------------hcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhH
Confidence 99999998 6678999999999997665543 578999999851
Q ss_pred ---------CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000888 1086 ---------FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1237)
Q Consensus 1086 ---------~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~ 1120 (1237)
..+.|+|++|++.+|.|...+.+...+|+...+..
T Consensus 664 ~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 664 KEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 13458899999999999999999999999888754
No 21
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-34 Score=309.22 Aligned_cols=244 Identities=37% Similarity=0.637 Sum_probs=225.5
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000888 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1237)
Q Consensus 930 ~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~ 1009 (1237)
+..++.||+|++...+++++.+.+|+.+|+.|...++ +|++||+|||+||||||.||+|+|+...+.|+++-.++|+.+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 4578999999999999999999999999999999885 566999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCC
Q 000888 1010 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1087 (1237)
Q Consensus 1010 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1087 (1237)
|.|+..+.++++|..|..++|+|+||||||.+..+|.. .+......+.+-+||++++++.. ++.|-||++||+.+.
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~ 336 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIET 336 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecccccc
Confidence 99999999999999999999999999999999988764 34445566777799999999965 578999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1088 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1165 (1237)
Q Consensus 1088 Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~ 1165 (1237)
|||+++| |+|+.|.|+.||...++.||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+|+.
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------ 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------ 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH------
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998862
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000888 1166 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1202 (1237)
Q Consensus 1166 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~ 1202 (1237)
...++++||+.|.+.|.
T Consensus 411 --------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 --------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred --------------------HhhccHHHHHHHHHHHH
Confidence 14699999999999884
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=300.49 Aligned_cols=242 Identities=31% Similarity=0.510 Sum_probs=213.8
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1010 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~ 1010 (1237)
+++|+|++|+++.|+..+-++ ..+.+|+.|.++. +++||||||||||||++|+|+|+++..||+.+...+|++.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~-~yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIM-EYLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHH-HHhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 578999999999998876544 4588999987653 48999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcH
Q 000888 1011 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 1090 (1237)
Q Consensus 1011 ~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~ 1090 (1237)
+|.....++.+|+.|++.+|||+||||+|.+.-.|.-+........+.|.||+.||++. .+..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999997655443444455688999999999996 4678999999999999999
Q ss_pred HHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1091 AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKN-LCVTAAHRPIKEILEKEKKERAA 1169 (1237)
Q Consensus 1091 aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~-L~~~Aa~~aireil~~e~~~~~~ 1169 (1237)
++++||...|+|.+|+.++|.+|++.++++..+.-+.++..++..|.|+||+||.. ++..|.++|+.+
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e----------- 338 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE----------- 338 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh-----------
Confidence 99999999999999999999999999999999998899999999999999999974 566777777765
Q ss_pred HHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCc
Q 000888 1170 AMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 1205 (1237)
Q Consensus 1170 a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~ 1205 (1237)
+...|+.+||+.|+++-++..
T Consensus 339 ---------------d~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 339 ---------------DREKVEREDIEKALKKERKRR 359 (368)
T ss_pred ---------------chhhhhHHHHHHHHHhhcccc
Confidence 123588999999999866554
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=322.44 Aligned_cols=247 Identities=38% Similarity=0.624 Sum_probs=222.5
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+.++|+||+|++.+++.|++.+.+|+.+++.|.+.++. +++++|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 457899999999999999999999999999999988854 5589999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1237)
+|.|+.+..++.+|..|+...|+||||||||.++..+... +......+++.+|+..++++.. ..+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCch
Confidence 9999999999999999999999999999999998776432 2234456788889999998754 35799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1164 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~ 1164 (1237)
.||++++| ||+..|+|+.|+.++|.+||+.++.+.++..++++..+|..++||+|+||.++|++|++.++++
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~------ 369 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK------ 369 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999988888999999999999999999999999999998875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccC
Q 000888 1165 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1204 (1237)
Q Consensus 1165 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS 1204 (1237)
....|+++||.+|++++...
T Consensus 370 --------------------~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 370 --------------------NRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --------------------CCCccCHHHHHHHHHHHHhc
Confidence 12479999999999998543
No 24
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=349.64 Aligned_cols=411 Identities=18% Similarity=0.240 Sum_probs=260.5
Q ss_pred CceeEeeccCCCCcceeeccCCCCCCCC-----CCCCCCCCC---ccccccccccccCCCcchhHHHHHHHHHHHHhhhc
Q 000888 617 GKVALLFEDNPSSKIGVRFDKPIPDGVD-----LGGQCEGGH---GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSES 688 (1237)
Q Consensus 617 g~v~~~~e~n~s~kvgV~Fd~~~~~~~~-----l~~~c~~~~---~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~ 688 (1237)
+++..-|..+|- =||+||+|||+|+| |++.|+.+. +||||||+||||||||| ++++++.|||.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgE--aERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGE--AERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCc--HHHHHHHHHHHHhc--
Confidence 344333445552 38999999999999 889999998 99999999999999999 99999999999999
Q ss_pred cCCCeEEEEcchhhhhc----CCcchhhhHHHHHhcC------CCcEEEEEeeccCCCccccCCCCCccccccCCccccc
Q 000888 689 RSCPFILFMKDAEKSIA----GNSDSYSTFKSRLEKL------PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTAL 758 (1237)
Q Consensus 689 ~~~p~ILfi~di~~~~~----~~~~~~~~lk~~L~~l------~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l 758 (1237)
++|+|||||||+.+.. .+.+.|+.++++|..| +|+|+||||||++|++||+ ||||||
T Consensus 362 -~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpa-------LRRPgr----- 428 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPA-------LRRPGR----- 428 (1080)
T ss_pred -cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchh-------hcCCcc-----
Confidence 9999999999999774 6789999999999666 7899999999999999999 999999
Q ss_pred ccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCcc
Q 000888 759 LDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECE 838 (1237)
Q Consensus 759 ~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsga 838 (1237)
|+++|+|++|+.++|.+|+.+|+.++-..+... -.+..+-.+.||+|+
T Consensus 429 -----------------------------fdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~---l~~~la~~t~gy~ga 476 (1080)
T KOG0732|consen 429 -----------------------------FDREFYFPLPDVDARAKILDIHTRKWEPPISRE---LLLWLAEETSGYGGA 476 (1080)
T ss_pred -----------------------------cceeEeeeCCchHHHHHHHHHhccCCCCCCCHH---HHHHHHHhccccchH
Confidence 889999999999999999999998765432221 123345567899999
Q ss_pred CcccccccccccchHHHHHHHHHHHHhhhhcCCCCC--CcccccccchhhhhHHHHHHHHHHhhhh--------hhhccc
Q 000888 839 GLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD--PDARLVLSCESIQYGIGIFQAIQNESKS--------LKKSLK 908 (1237)
Q Consensus 839 DL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~--~~~~l~l~~ed~~~al~~lq~i~~~~k~--------~k~~~k 908 (1237)
||+.+|+++++.+... ......+. .+.+ ....+.+.-.+|..++. ++.+.... +...++
T Consensus 477 DlkaLCTeAal~~~~r-------~~Pq~y~s-~~kl~~d~~~ikV~~~~f~~A~~---~i~ps~~R~~~~~s~Pl~~~~~ 545 (1080)
T KOG0732|consen 477 DLKALCTEAALIALRR-------SFPQIYSS-SDKLLIDVALIKVEVRDFVEAMS---RITPSSRRSSVIFSRPLSTYLK 545 (1080)
T ss_pred HHHHHHHHHhhhhhcc-------ccCeeecc-cccccccchhhhhhhHhhhhhhh---ccCCCCCccccCCCCCCCccee
Confidence 9999999988744110 00000000 0000 00111122222222221 22111110 000000
Q ss_pred ccCCHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHH
Q 000888 909 DVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAK 988 (1237)
Q Consensus 909 ~~v~~~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAk 988 (1237)
..++..+... .+...++... ..--+-+..+..++++... |.-..+.+| .+|+.|..|.|.+++.+
T Consensus 546 ~ll~~~~~~~-~iq~~~~va~-----~~~k~~e~~~~~v~~~e~~-------~~i~lic~~--~lli~~~~~~g~~~lg~ 610 (1080)
T KOG0732|consen 546 PLLPFQDALE-DIQGLMDVAS-----SMAKIEEHLKLLVRSFESN-------FAIRLICRP--RLLINGGKGSGQDYLGP 610 (1080)
T ss_pred cccchHHHHH-HhhcchhHHh-----hhhhHHHHhHHHHHhhhcc-------cchhhhcCc--HHhcCCCcccccCcccH
Confidence 0010000000 1111111100 0000001111111111110 111112333 59999999999999999
Q ss_pred HHHHHh-CCcEEEEecccccccc-ccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhc
Q 000888 989 AVATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1066 (1237)
Q Consensus 989 AIA~eL-g~~fi~Id~seL~s~~-~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ld 1066 (1237)
||.+.+ ++++..++.+.+.... ....+..+..+|.+|++..||||||.++|.|...... .+..+|+..++
T Consensus 611 aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~ 682 (1080)
T KOG0732|consen 611 AILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLD 682 (1080)
T ss_pred HHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcch
Confidence 999998 8888888888887766 6778899999999999999999999999999744321 23333433333
Q ss_pred CCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000888 1067 GLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1237)
Q Consensus 1067 gl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~ 1120 (1237)
.... ...+..+-+-..- +-.-=...+.+..|..+.+..+++..++.
T Consensus 683 ~~~~--~t~i~e~~t~~~~------~~~~~~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 683 EKAL--STPILELHTWDTS------FESVNKSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred hhhh--ccchhhhcccccc------ccccCccccccccchhhhhHHHHHHHHHH
Confidence 2211 1112221111110 00000123556678888888777777654
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.3e-31 Score=314.78 Aligned_cols=251 Identities=40% Similarity=0.690 Sum_probs=223.4
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+.++|+||+|+++.++.|++.+..|+.+++.|...++. ++++||||||||||||++|+++|++++.+|+.++++++..
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 346899999999999999999999999999999887754 4589999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1237)
.|.|+.+..++.+|..|+...|+||||||||.++..+.... ......+.+.+++..++++.. ..++.||+|||.++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999987764322 123345666778888887643 35799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1164 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~ 1164 (1237)
.+|++++| ||+..|+|+.|+.++|.+||+.++.+..+..+.++..||..|+||+++||.++|++|++.++++
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~------ 355 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD------ 355 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999998888888899999999999999999999999999988775
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 000888 1165 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1208 (1237)
Q Consensus 1165 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e 1208 (1237)
....|+++||.+|+++++++...+
T Consensus 356 --------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 --------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 124699999999999999887655
No 26
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.1e-32 Score=291.90 Aligned_cols=248 Identities=33% Similarity=0.584 Sum_probs=226.3
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+++++.|++|..+..+.|++.+..|+.+|+.|.+.++. |++|||||||||||||.+|+|+|+..++.|+++-.++|+.
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 357899999999999999999999999999999999865 5599999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1237)
+|+|+....++.+|++|+...-||||+||||.+.+.|... +......+.+.+++.++|++.. ++++-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCCC
Confidence 9999999999999999999999999999999999988654 3334456777789999999965 57899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1164 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~ 1164 (1237)
.|||+++| |+++.++|.+|+.+.|..||+.+.+.+.+..++-++.||+++...+|++|+.+|.+|.+.+++.-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999998899999999999999999999999999999998851
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCc
Q 000888 1165 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 1205 (1237)
Q Consensus 1165 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~ 1205 (1237)
....|..||.+|+.+|...+
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy 422 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHH
Confidence 13578899999999986554
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=322.15 Aligned_cols=255 Identities=40% Similarity=0.611 Sum_probs=232.0
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
...++|.|+.|.++.|+.|.+.|.. ++.|..|...+. +-|+|+||+||||||||.||+|+|.+.+.||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4578999999999999999999985 899999998876 55699999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1237)
.++|-....++.+|..|++.+||||||||||.+...|.. .+.+......+|++++.||++. .+..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCcc
Confidence 999999999999999999999999999999999877742 2455666789999999999996 357899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1164 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~ 1164 (1237)
.||++++| |||+.|.++.||...|++|++.++++..+..++++..+|++|.||+|+||.+++++|+..+.++
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999988775
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchh
Q 000888 1165 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMS 1213 (1237)
Q Consensus 1165 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~ 1213 (1237)
....+++.||.+|++++..........+.
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erks~vis 402 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERKSRVIS 402 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcCCcccC
Confidence 23579999999999999877766554333
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=7.7e-31 Score=317.17 Aligned_cols=270 Identities=40% Similarity=0.600 Sum_probs=234.8
Q ss_pred CCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000888 927 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1006 (1237)
Q Consensus 927 ~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL 1006 (1237)
...+.++|+|++|++++++.+++.+.. +.+++.|.+.+. .+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 345679999999999999999998875 788888887664 455899999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCC--chhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC
Q 000888 1007 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1084 (1237)
Q Consensus 1007 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~--~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1084 (1237)
...+.|..+..++.+|..|+...|+||||||||.++..+... ........++++|+..++++.. ..+++||+|||.
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~ 202 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNR 202 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCC
Confidence 999999999999999999999999999999999998766532 2234456788999999998854 457999999999
Q ss_pred CCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1085 PFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 1162 (1237)
Q Consensus 1085 p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~ 1162 (1237)
++.||++++| ||++.|+|+.|+.++|.+||+.++....+..+.++..+|..+.||+++||.++|++|+..+.++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~---- 278 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK---- 278 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999998 9999999999999999999999998877777889999999999999999999999998766553
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcCCC
Q 000888 1163 EKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1226 (1237)
Q Consensus 1163 e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~g 1226 (1237)
....++.+||+.|++++..........+.+..+|...|.|.|
T Consensus 279 ----------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 279 ----------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred ----------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 124699999999999997766555556777888888887766
No 29
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=8.1e-31 Score=309.71 Aligned_cols=246 Identities=36% Similarity=0.616 Sum_probs=220.1
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000888 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1237)
Q Consensus 930 ~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~ 1009 (1237)
+..+|+||+|+++.++.|++.+..++.+++.|...++. ++.++|||||||||||++|+++|++++.+|+.+..+++...
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 46899999999999999999999999999999988865 55899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCC
Q 000888 1010 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1087 (1237)
Q Consensus 1010 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1087 (1237)
|.|+.+..++.+|..|+...|+||||||||.++.++.. .+......+.+.+++..++++.. ..++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChHH
Confidence 99999999999999999999999999999999877643 22233445666788888888753 357999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1088 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1165 (1237)
Q Consensus 1088 Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~ 1165 (1237)
||++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..++..++||+++||.++|.+|++.|+++
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~------- 407 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRE------- 407 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999997 9999999999999999999999999888888899999999999999999999999999998875
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccC
Q 000888 1166 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 1204 (1237)
Q Consensus 1166 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS 1204 (1237)
....|+++||..|++++...
T Consensus 408 -------------------~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 408 -------------------RRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred -------------------cCCccCHHHHHHHHHHHHhh
Confidence 12469999999999998543
No 30
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-31 Score=315.91 Aligned_cols=263 Identities=37% Similarity=0.615 Sum_probs=244.3
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1010 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~ 1010 (1237)
.++ .+++|+......+++.+..|+.++..+...+. ++++++|+|||||+|||.+++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCC-CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 345 78999999999999999999999999988775 5669999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCc
Q 000888 1011 FGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1089 (1237)
Q Consensus 1011 ~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1089 (1237)
.|+++.+++..|+.|.+++ |+||||||+|.+++++..... ...++..+++.+++++.. ..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876444 568899999999999863 57899999999999999
Q ss_pred HHHHh-hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1090 EAVIR-RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERA 1168 (1237)
Q Consensus 1090 ~aLlr-RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~ 1168 (1237)
++++| ||++.+.+..|+..+|.+|++.+..+++..++.++..+|..+.||+|+||..+|.+|+..++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999987763
Q ss_pred HHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcCCCCccc
Q 000888 1169 AAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRRK 1230 (1237)
Q Consensus 1169 ~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~gsrk~ 1230 (1237)
++++|..|+..++||..++.....+.+.|+||+|.+--|++
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 67999999999999999999988999999999998776654
No 31
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=4e-29 Score=314.52 Aligned_cols=390 Identities=19% Similarity=0.249 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc------CCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCc
Q 000888 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGL 746 (1237)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~------~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~ 746 (1237)
.+..|..+++.+.+ .+|.||||||||.+++ |+.+..+.|++.|++ |+|.|||+||..++
T Consensus 259 ~e~~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~---------- 323 (731)
T TIGR02639 259 FEERLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEY---------- 323 (731)
T ss_pred HHHHHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHH----------
Confidence 44566666666655 6799999999999985 246788999999965 99999999998764
Q ss_pred cccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhH
Q 000888 747 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHL 826 (1237)
Q Consensus 747 ~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l 826 (1237)
+..++.|.+|.+|| +.|+|.+|+.+++++||+....+ +..++++...
T Consensus 324 ----------------------------~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~----~e~~~~v~i~ 370 (731)
T TIGR02639 324 ----------------------------KNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEK----YEEFHHVKYS 370 (731)
T ss_pred ----------------------------HHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHH----HHhccCcccC
Confidence 12345699999999 69999999999999999987655 4455677777
Q ss_pred HHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHHHHHHHhhhhhhhc
Q 000888 827 RTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKS 906 (1237)
Q Consensus 827 ~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~lq~i~~~~k~~k~~ 906 (1237)
.+++. .+++|...++.++.+++++|+.+-..++...+. +....+..++.+++...+...-.+ |..
T Consensus 371 ~~al~----~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~----~~~~~~~~v~~~~i~~~i~~~tgi-P~~------ 435 (731)
T TIGR02639 371 DEALE----AAVELSARYINDRFLPDKAIDVIDEAGASFRLR----PKAKKKANVSVKDIENVVAKMAHI-PVK------ 435 (731)
T ss_pred HHHHH----HHHHhhhcccccccCCHHHHHHHHHhhhhhhcC----cccccccccCHHHHHHHHHHHhCC-Chh------
Confidence 77776 457888889999999999998886554433332 111123456666666655533211 100
Q ss_pred ccccCCHHH------HHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCC
Q 000888 907 LKDVVTENE------FEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 980 (1237)
Q Consensus 907 ~k~~v~~~e------~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPG 980 (1237)
.++.++ ++..+. ..+.|+++.++.+.+.+...... -....+|...+||+||+|
T Consensus 436 ---~~~~~~~~~l~~l~~~l~-------------~~v~GQ~~ai~~l~~~i~~~~~g-----~~~~~~p~~~~lf~Gp~G 494 (731)
T TIGR02639 436 ---TVSVDDREKLKNLEKNLK-------------AKIFGQDEAIDSLVSSIKRSRAG-----LGNPNKPVGSFLFTGPTG 494 (731)
T ss_pred ---hhhhHHHHHHHHHHHHHh-------------cceeCcHHHHHHHHHHHHHHhcC-----CCCCCCCceeEEEECCCC
Confidence 011111 222111 24567888888777766531000 011235656799999999
Q ss_pred ChHHHHHHHHHHHhCCcEEEEecccccc-----ccccccHHHH-----HHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000888 981 TGKTMLAKAVATEAGANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1237)
Q Consensus 981 TGKT~LAkAIA~eLg~~fi~Id~seL~s-----~~~G~se~~I-----~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1050 (1237)
||||+||+++|+.++.++++++|+++.. ..+|....++ ..+....++.+.+||+|||||.+
T Consensus 495 vGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka--------- 565 (731)
T TIGR02639 495 VGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA--------- 565 (731)
T ss_pred ccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc---------
Confidence 9999999999999999999999988643 2334333222 34556667778899999999966
Q ss_pred hHHHHHHHHHHHHHhcCCccc-------CCccEEEEEecCCCC-------------------------CCcHHHHhhccc
Q 000888 1051 HEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF-------------------------DLDEAVIRRLPR 1098 (1237)
Q Consensus 1051 ~~a~~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRFd~ 1098 (1237)
+..+.+.|++.++..... +-.++++|+|||... .+.|+|+.||+.
T Consensus 566 ---~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~ 642 (731)
T TIGR02639 566 ---HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDA 642 (731)
T ss_pred ---CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCe
Confidence 245667777777754322 225688999998631 256889999999
Q ss_pred cccCCCCCHHHHHHHHHHHHhhC-------CCC---ChhhHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHH
Q 000888 1099 RLMVNLPDAPNRAKILQVILAKE-------DLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKE 1158 (1237)
Q Consensus 1099 ~I~v~~Pd~eeR~eILk~~L~~~-------~l~---~d~dl~~LA~~--T~GySgaDL~~L~~~Aa~~aire 1158 (1237)
+|.|.+.+.++..+|++..+.+. ++. ++..++.|++. ...|..+.|+.+++.-...++.+
T Consensus 643 Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 643 IIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 99999999999999999987631 111 33345566664 33455666766666665555443
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=6.7e-29 Score=289.50 Aligned_cols=244 Identities=43% Similarity=0.719 Sum_probs=215.0
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+.++|+|++|+++.++.|++.+..++.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+...++..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 457899999999999999999999999999999887754 4589999999999999999999999999999999999988
Q ss_pred ccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1237)
.+.|+....++.+|..++...|+||||||+|.+...+.... ......+.+.+++..++++.. ..++.||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999986654321 122345566777777777643 35799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1164 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~ 1164 (1237)
.+|+++++ ||++.|+|+.|+.++|.+||+.++....+..+.++..+++.++||+++||.++|++|++.++++
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~------ 346 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE------ 346 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998887777789999999999999999999999999998775
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000888 1165 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1201 (1237)
Q Consensus 1165 ~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v 1201 (1237)
....|+.+||.+|++++
T Consensus 347 --------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 347 --------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCCccCHHHHHHHHHHh
Confidence 12469999999999986
No 33
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-28 Score=307.54 Aligned_cols=435 Identities=17% Similarity=0.211 Sum_probs=291.8
Q ss_pred cceeeccCCCCCCCC-----CCCCCCCCC--------ccc-ccccccc-ccCCCcchhHHHHHHHHHHHHhhhccCCCeE
Q 000888 630 KIGVRFDKPIPDGVD-----LGGQCEGGH--------GFF-CNVTDLR-LENSGTEDLDKLLINTLFEVVFSESRSCPFI 694 (1237)
Q Consensus 630 kvgV~Fd~~~~~~~~-----l~~~c~~~~--------~ff-~~~~~~~-l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~I 694 (1237)
+--+++-+|+|+||| |+..+-..+ .+| ...++.. -.+|.|+ .+.-++.+++.+.. .++.|
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge--~e~rl~~l~~~l~~---~~~~I 281 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD--FEKRFKALLKQLEQ---DTNSI 281 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhh--HHHHHHHHHHHHHh---cCCCE
Confidence 445688999999999 333221111 222 1112111 1466777 66677777777765 78999
Q ss_pred EEEcchhhhhc------CCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccc
Q 000888 695 LFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 768 (1237)
Q Consensus 695 Lfi~di~~~~~------~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~ 768 (1237)
|||||||.+++ ++.++.+.|+++|.+ |++.|||+||..++.
T Consensus 282 LfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~------------------------------- 328 (758)
T PRK11034 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFS------------------------------- 328 (758)
T ss_pred EEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHH-------------------------------
Confidence 99999999985 356788999999965 999999999988741
Q ss_pred cccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCccccccccc
Q 000888 769 RLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQ 848 (1237)
Q Consensus 769 r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~ 848 (1237)
..++.|.+|.||| +.|+|.+|+.+++++||+....+ +..+|++.+...++. .+.+|...++.++
T Consensus 329 -------~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~----ye~~h~v~i~~~al~----~a~~ls~ryi~~r 392 (758)
T PRK11034 329 -------NIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPK----YEAHHDVRYTAKAVR----AAVELAVKYINDR 392 (758)
T ss_pred -------HHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHH----hhhccCCCcCHHHHH----HHHHHhhccccCc
Confidence 1233589999999 79999999999999999987644 777889988888887 3678888999999
Q ss_pred ccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHHHHHHHhhhhhhhcccccCCHHHHHH--HHhcCcCC
Q 000888 849 SLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEK--RLLADVIP 926 (1237)
Q Consensus 849 ~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~--~ll~~ii~ 926 (1237)
.+++++|+.+...++...+. +....+..++.+++...+...-.+ |... +..++.+. .+...+
T Consensus 393 ~lPdKaidlldea~a~~~~~----~~~~~~~~v~~~~i~~v~~~~tgi-p~~~---------~~~~~~~~l~~l~~~L-- 456 (758)
T PRK11034 393 HLPDKAIDVIDEAGARARLM----PVSKRKKTVNVADIESVVARIARI-PEKS---------VSQSDRDTLKNLGDRL-- 456 (758)
T ss_pred cChHHHHHHHHHHHHhhccC----cccccccccChhhHHHHHHHHhCC-Chhh---------hhhhHHHHHHHHHHHh--
Confidence 99999999998777654442 111122345555555444322111 0000 11111110 111110
Q ss_pred CCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000888 927 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1006 (1237)
Q Consensus 927 ~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL 1006 (1237)
-..+.|+++.++.|.+.+...... -....+|..++||+||||||||++|+++|..++.+|+.++|+++
T Consensus 457 -------~~~ViGQ~~ai~~l~~~i~~~~~g-----l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~ 524 (758)
T PRK11034 457 -------KMLVFGQDKAIEALTEAIKMSRAG-----LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_pred -------cceEeCcHHHHHHHHHHHHHHhcc-----ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence 124689999999988887632110 01124566789999999999999999999999999999999886
Q ss_pred c-----cccccccHHHH-----HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCccc-----
Q 000888 1007 T-----SKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK----- 1071 (1237)
Q Consensus 1007 ~-----s~~~G~se~~I-----~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~----- 1071 (1237)
. ..++|.+..++ ..+.+..++.+.+||||||||.+ +..+.+.|++.++.....
T Consensus 525 ~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka------------~~~v~~~LLq~ld~G~ltd~~g~ 592 (758)
T PRK11034 525 MERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA------------HPDVFNLLLQVMDNGTLTDNNGR 592 (758)
T ss_pred cccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh------------hHHHHHHHHHHHhcCeeecCCCc
Confidence 3 34455443333 23445556677899999999976 245677787777743221
Q ss_pred --CCccEEEEEecCCC-------------------------CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh----
Q 000888 1072 --DTERILVLAATNRP-------------------------FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK---- 1120 (1237)
Q Consensus 1072 --~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~---- 1120 (1237)
+-.++++|+|||.- ..+.|+|++|++.+|.|++++.++..+|+...+..
T Consensus 593 ~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~ 672 (758)
T PRK11034 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQ 672 (758)
T ss_pred eecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 12578899999832 13668999999999999999999999999877653
Q ss_pred ---CCCC---ChhhHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 000888 1121 ---EDLS---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKE 1158 (1237)
Q Consensus 1121 ---~~l~---~d~dl~~LA~~T--~GySgaDL~~L~~~Aa~~aire 1158 (1237)
.++. ++.-++.|+... ..|-.+.|+.+++.-...++.+
T Consensus 673 l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 673 LDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred HHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 2222 233345555432 2344556666665555544443
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=1.8e-28 Score=293.37 Aligned_cols=276 Identities=29% Similarity=0.493 Sum_probs=218.6
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 000888 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------- 997 (1237)
Q Consensus 928 ~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~---------- 997 (1237)
..+.++|+||+|++..++.+++.+..|+.+++.|...++. |++++|||||||||||++|+++|++++.+
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~-~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK-PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC-CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3457899999999999999999999999999999987754 55899999999999999999999998644
Q ss_pred EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCC
Q 000888 998 FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1073 (1237)
Q Consensus 998 fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~ 1073 (1237)
|+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+.........++++++|+..++++.. .
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~--~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES--L 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc--C
Confidence 6677778899999999999999999998864 699999999999998876544444557888999999999854 3
Q ss_pred ccEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhC-CCC---------ChhhHHHHHHH------
Q 000888 1074 ERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE-DLS---------PDVDFDAIANM------ 1135 (1237)
Q Consensus 1074 ~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~-~l~---------~d~dl~~LA~~------ 1135 (1237)
.+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... .+. ...++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 579999999999999999999 999999999999999999999998642 221 11122222221
Q ss_pred -----------------------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHH
Q 000888 1136 -----------------------TDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMD 1192 (1237)
Q Consensus 1136 -----------------------T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~e 1192 (1237)
++.+||++|.++|..|...++++.+.. ....++++
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~----------------------~~~~~~~~ 469 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG----------------------GQVGLRIE 469 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc----------------------CCcCcCHH
Confidence 455677777777777777777664311 12579999
Q ss_pred HHHHHHHHhccCccccccchhhhHHHHHHhcCCCCcc
Q 000888 1193 DFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 1229 (1237)
Q Consensus 1193 DF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~gsrk 1229 (1237)
|+..|+.+-.... ++...-..-.+|..+.|..|.|-
T Consensus 470 ~l~~a~~~e~~~~-~~~~~~~~~~~w~~~~~~~~~~~ 505 (512)
T TIGR03689 470 HLLAAVLDEFRES-EDLPNTTNPDDWARISGKKGERI 505 (512)
T ss_pred HHHHHHHHhhccc-ccCCCCCCHHHHhhhhCCCCCce
Confidence 9999998753322 23334445567999999887653
No 35
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.1e-28 Score=303.66 Aligned_cols=268 Identities=37% Similarity=0.567 Sum_probs=224.3
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000888 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1237)
Q Consensus 928 ~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~ 1007 (1237)
.+..++|+|++|++++++.+.+.+.. +++++.|...+. .+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 34468999999999999999998865 788888877664 4458999999999999999999999999999999999998
Q ss_pred cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC
Q 000888 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1237)
..+.|.....++.+|..|+...|+||||||||.+...+.. ...+.....+++.|+..++++.. +.+++||++||++
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~ 331 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRV 331 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCch
Confidence 8888888889999999999999999999999999866542 22344556788899999998754 4679999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e 1163 (1237)
+.+|++++| ||++.+.|+.|+.++|.+||+.+++...+..+.++..+|+.+.||+++||.++|++|+..+.++
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~----- 406 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR----- 406 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 9999999999999999999999998877778899999999999999999999999998876553
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcCCC
Q 000888 1164 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 1226 (1237)
Q Consensus 1164 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~g 1226 (1237)
....++++||+.|++++........ ...+..+|.-.|-|.|
T Consensus 407 ---------------------~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaG 447 (638)
T CHL00176 407 ---------------------KKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVG 447 (638)
T ss_pred ---------------------CCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhh
Confidence 2246999999999999855433221 2233445555554444
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.6e-28 Score=309.70 Aligned_cols=289 Identities=38% Similarity=0.623 Sum_probs=244.4
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000888 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1237)
Q Consensus 930 ~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~ 1009 (1237)
..++|+||+|++++++.+++++..++.+++.|...++ .+++++|||||||||||+||+++|++++.+|+.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4689999999999999999999999999999988775 455899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCc
Q 000888 1010 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1089 (1237)
Q Consensus 1010 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1089 (1237)
+.|..+..++.+|..|....|+||||||||.++..+.... .....++.++|+..++++.. ..+++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765432 23346788889999988753 46899999999999999
Q ss_pred HHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1090 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 1167 (1237)
Q Consensus 1090 ~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~ 1167 (1237)
+++++ ||+..+.++.|+.++|.+||+.+.....+..+.++..+++.++||+++||..+|+.|+..++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999888877777889999999999999999999999999999887653211000
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcCCCCcc
Q 000888 1168 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 1229 (1237)
Q Consensus 1168 ~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~gsrk 1229 (1237)
.....+ ........++++||..|+..+.|+...+.....+.+.|.+++|....|+
T Consensus 409 ---~~~~i~----~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 409 ---EAEEIP----AEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred ---cccccc----chhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 000000 0111234689999999999999998777666778899999888665553
No 37
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=5.7e-27 Score=297.55 Aligned_cols=416 Identities=19% Similarity=0.215 Sum_probs=268.9
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCcc
Q 000888 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 747 (1237)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~-----~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~ 747 (1237)
.+..|..+++.+.. ..+++||||||||.+++ ++++..+.|+++|++ |.+.|||+||..++
T Consensus 264 ~e~~lk~ii~e~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~----------- 328 (852)
T TIGR03345 264 FENRLKSVIDEVKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEY----------- 328 (852)
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHH-----------
Confidence 44455666665543 15799999999999985 678888999999965 99999999998774
Q ss_pred ccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHH
Q 000888 748 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLR 827 (1237)
Q Consensus 748 l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~ 827 (1237)
+..++.|.+|.+|| +.|+|.+|+.+++.+||+..... +..++++.+..
T Consensus 329 ---------------------------~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~----~e~~~~v~i~d 376 (852)
T TIGR03345 329 ---------------------------KKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPV----LEKHHGVLILD 376 (852)
T ss_pred ---------------------------hhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHh----hhhcCCCeeCH
Confidence 12345699999999 79999999999999999765533 55557777777
Q ss_pred HHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCC--cc--cc--------cccchh----------
Q 000888 828 TVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--DA--RL--------VLSCES---------- 885 (1237)
Q Consensus 828 ~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~--~~--~l--------~l~~ed---------- 885 (1237)
.++. .++.|...|+.++.+++++|+.+...++...+.....|.. +. ++ .+..++
T Consensus 377 ~al~----~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (852)
T TIGR03345 377 EAVV----AAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERL 452 (852)
T ss_pred HHHH----HHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHH
Confidence 7776 4578888999999999999999988877776654443321 00 00 000000
Q ss_pred ---------hhhHHHHHHHHHHhhhh---------------------------------------hhh---cccccCCHH
Q 000888 886 ---------IQYGIGIFQAIQNESKS---------------------------------------LKK---SLKDVVTEN 914 (1237)
Q Consensus 886 ---------~~~al~~lq~i~~~~k~---------------------------------------~k~---~~k~~v~~~ 914 (1237)
+...+..+.......+. ... .....++.+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 532 (852)
T TIGR03345 453 AELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQ 532 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHH
Confidence 00000000000000000 000 001224555
Q ss_pred HHHHHHhcCcCCCCCCCccch--------------hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCC
Q 000888 915 EFEKRLLADVIPPSDIGVTFD--------------DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPG 980 (1237)
Q Consensus 915 e~e~~ll~~ii~~~~~~vtf~--------------dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPG 980 (1237)
++.. +++.++..+...+.-+ .+.|++...+.+.+.+...... -....+|...+||+||+|
T Consensus 533 ~i~~-vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g-----l~~~~~p~~~~lf~Gp~G 606 (852)
T TIGR03345 533 AVAE-VVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAG-----LEDPRKPLGVFLLVGPSG 606 (852)
T ss_pred HHHH-HHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcC-----CCCCCCCceEEEEECCCC
Confidence 5554 4455554444333332 3556666666665555321000 011234545699999999
Q ss_pred ChHHHHHHHHHHHh---CCcEEEEeccccc-----cccccccHHHH-----HHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000888 981 TGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1237)
Q Consensus 981 TGKT~LAkAIA~eL---g~~fi~Id~seL~-----s~~~G~se~~I-----~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1047 (1237)
+|||++|+++|..+ ...++.++|+++. +..+|.+..++ ..+....++.+++||+|||||..
T Consensus 607 vGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka------ 680 (852)
T TIGR03345 607 VGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA------ 680 (852)
T ss_pred CCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc------
Confidence 99999999999999 4578999998763 23444443333 23556667788999999999854
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccC-------CccEEEEEecCCCC-----------------------------CCcHH
Q 000888 1048 PGEHEAMRKMKNEFMVNWDGLRTKD-------TERILVLAATNRPF-----------------------------DLDEA 1091 (1237)
Q Consensus 1048 ~~~~~a~~~il~eLL~~ldgl~~~~-------~~~VlVIaTTN~p~-----------------------------~Ld~a 1091 (1237)
+..+.+.|++.++.....+ -.+.+||+|||... .+.|+
T Consensus 681 ------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PE 754 (852)
T TIGR03345 681 ------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPA 754 (852)
T ss_pred ------CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHH
Confidence 2456666777776543221 25789999988511 25578
Q ss_pred HHhhccccccCCCCCHHHHHHHHHHHHhhC--------CCC---ChhhHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHH
Q 000888 1092 VIRRLPRRLMVNLPDAPNRAKILQVILAKE--------DLS---PDVDFDAIANMTDG--YSGSDLKNLCVTAAHRPIKE 1158 (1237)
Q Consensus 1092 LlrRFd~~I~v~~Pd~eeR~eILk~~L~~~--------~l~---~d~dl~~LA~~T~G--ySgaDL~~L~~~Aa~~aire 1158 (1237)
|++|++ +|.|.+++.++..+|++..+... ++. ++...+.|+....+ |-.+.|.++++.-...++.+
T Consensus 755 flnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 755 FLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred Hhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 888996 88999999999999998877541 222 33345667776543 55777777777666655554
No 38
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=8.7e-28 Score=298.02 Aligned_cols=268 Identities=38% Similarity=0.589 Sum_probs=227.7
Q ss_pred CCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000888 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1237)
Q Consensus 928 ~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~ 1007 (1237)
.....+|.++.|++..++.+.+.+.. +..+..+...+. ..++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34457899999999999999998876 556666655443 3447899999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC--CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC
Q 000888 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~--~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1237)
..+.|.....++.+|..|+..+|+||||||||.+...+.. .+.+.....++++++..++++.. +..++||+|||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 8999999999999999999999999999999999877653 23344556789999999999854 4679999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e 1163 (1237)
+.||++++| ||++.|.|+.|+.++|.+||+.++.+..+..+.++..+|+.|.||+++||.++|++|+..++++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----- 375 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 375 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999888888899999999999999999999999999887664
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhhHHHHHHhcCC
Q 000888 1164 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEG 1225 (1237)
Q Consensus 1164 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~ 1225 (1237)
....++++||++|++++.+........+.+..+|.-.|.|.
T Consensus 376 ---------------------~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~ 416 (644)
T PRK10733 376 ---------------------NKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEA 416 (644)
T ss_pred ---------------------CCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 22469999999999999887665544555555555555443
No 39
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-28 Score=268.29 Aligned_cols=243 Identities=36% Similarity=0.667 Sum_probs=217.0
Q ss_pred CCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 000888 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1237)
Q Consensus 930 ~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~ 1009 (1237)
..++|++++|+..+..+|++.+..|+.+|++|..-++ +||.+++||||||+|||.+|+++|..++++|+.+..+++.++
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 4679999999999999999999999999999988775 566999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCc--hhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCC
Q 000888 1010 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 1087 (1237)
Q Consensus 1010 ~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~--~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~ 1087 (1237)
+.|++...|++.|..|+.+.|||||+||||.+.+++.... ......+.+-+|+..|+++.. ..+|-+|+|||+|+.
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDT 283 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCccc
Confidence 9999999999999999999999999999999998886543 233455666677888888754 578999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1088 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1165 (1237)
Q Consensus 1088 Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~ 1165 (1237)
|+|+++| |+++.+.+|+|+...|..|++.+.+.....-.++.+++.+..+||.|+|+++.|++|.+.++++.
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~------ 357 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE------ 357 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh------
Confidence 9999999 99999999999999999999998887777778889999999999999999999999998877651
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000888 1166 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1201 (1237)
Q Consensus 1166 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v 1201 (1237)
...+-+|||..++.++
T Consensus 358 --------------------~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 358 --------------------RDEVLHEDFMKLVRKQ 373 (388)
T ss_pred --------------------hHHHhHHHHHHHHHHH
Confidence 1246778999888876
No 40
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.95 E-value=2.7e-26 Score=292.05 Aligned_cols=416 Identities=17% Similarity=0.204 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCcc
Q 000888 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 747 (1237)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~-----~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~ 747 (1237)
++.-|..+++.+.. .+++||||||||.+++ |..+..+.|++.|.+ |.|.|||+||..++.+
T Consensus 256 ~e~rl~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~--------- 321 (821)
T CHL00095 256 FEERLKRIFDEIQE---NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRK--------- 321 (821)
T ss_pred HHHHHHHHHHHHHh---cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHH---------
Confidence 34455666665554 7899999999999986 456788999999965 9999999999887521
Q ss_pred ccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHH
Q 000888 748 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLR 827 (1237)
Q Consensus 748 l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~ 827 (1237)
..+.|.+|.+|| +.|.+.+|+.++...|++...+. +...+++....
T Consensus 322 -----------------------------~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~----~e~~~~v~i~d 367 (821)
T CHL00095 322 -----------------------------HIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSR----YEKHHNLSISD 367 (821)
T ss_pred -----------------------------HHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHH----HHHHcCCCCCH
Confidence 233588999999 68999999999999999876654 33333444444
Q ss_pred HHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCccc-------------ccccchhhhhHHHHHH
Q 000888 828 TVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDAR-------------LVLSCESIQYGIGIFQ 894 (1237)
Q Consensus 828 ~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~-------------l~l~~ed~~~al~~lq 894 (1237)
+++. ...+|...++.++.+++++|+.+...++...+.....|..... ..+..+++..+.....
T Consensus 368 eal~----~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (821)
T CHL00095 368 KALE----AAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRD 443 (821)
T ss_pred HHHH----HHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4444 3357778888999999999999988887776654333321000 0111112222111110
Q ss_pred H---HHHhhhhh---------hhcccccCCHHHHHHHHhcCcCCCCCCCccc--------------hhccccHHHHHHHH
Q 000888 895 A---IQNESKSL---------KKSLKDVVTENEFEKRLLADVIPPSDIGVTF--------------DDIGALENVKDTLK 948 (1237)
Q Consensus 895 ~---i~~~~k~~---------k~~~k~~v~~~e~e~~ll~~ii~~~~~~vtf--------------~dI~Gle~vK~~L~ 948 (1237)
. +....... .......++.+++.. ++..++..+...+.- ..+.|++...+.+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~ 522 (821)
T CHL00095 444 REMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAE-IVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVS 522 (821)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHH-HHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHH
Confidence 0 00000000 001123467777765 556565554443332 34566666666666
Q ss_pred HHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-----cccccccHHHH--
Q 000888 949 ELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV-- 1018 (1237)
Q Consensus 949 e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~-----s~~~G~se~~I-- 1018 (1237)
..+..... .-....+|...+||+||+|+|||+||+++|+.+ +.++++++++++. ++.+|.+..++
T Consensus 523 ~~i~~~~~-----gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~ 597 (821)
T CHL00095 523 KAIRRARV-----GLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGY 597 (821)
T ss_pred HHHHHHhh-----cccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCc
Confidence 65542100 001224565679999999999999999999998 4789999998873 23344443333
Q ss_pred ---HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCccc-------CCccEEEEEecCCCC--
Q 000888 1019 ---KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF-- 1086 (1237)
Q Consensus 1019 ---~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p~-- 1086 (1237)
..+.+..++.+.+||+|||||.+ +..+.+.|++.++..... +-.+.++|+|||...
T Consensus 598 ~~~~~l~~~~~~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~ 665 (821)
T CHL00095 598 NEGGQLTEAVRKKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKV 665 (821)
T ss_pred CccchHHHHHHhCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHH
Confidence 34667777778899999999966 245677777777753221 235789999988521
Q ss_pred -----------------------------------CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC-------CCC
Q 000888 1087 -----------------------------------DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLS 1124 (1237)
Q Consensus 1087 -----------------------------------~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~-------~l~ 1124 (1237)
.+.|+|++|++.+|.|.+.+.++..+|++..+... ++.
T Consensus 666 i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~ 745 (821)
T CHL00095 666 IETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQ 745 (821)
T ss_pred HHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 02367888999999999999999999998877542 211
Q ss_pred ---ChhhHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 000888 1125 ---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKE 1158 (1237)
Q Consensus 1125 ---~d~dl~~LA~~T--~GySgaDL~~L~~~Aa~~aire 1158 (1237)
++...+.|++.. ..|-.+.|+.+++.-...++.+
T Consensus 746 l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 746 LEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred EEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 223345566542 2344566666665555544443
No 41
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=1.1e-25 Score=287.19 Aligned_cols=417 Identities=17% Similarity=0.255 Sum_probs=268.0
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCcc
Q 000888 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 747 (1237)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~-----~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~ 747 (1237)
.+..+..+++.+.. ..+|+||||||||.+++ |+.+..+.|+++|. +|.+.|||+||..+++
T Consensus 250 ~e~~l~~~l~~~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r---------- 315 (852)
T TIGR03346 250 FEERLKAVLNEVTK--SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYR---------- 315 (852)
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHH----------
Confidence 44455666665543 14799999999999984 44678899999995 4999999999988741
Q ss_pred ccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHH
Q 000888 748 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLR 827 (1237)
Q Consensus 748 l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~ 827 (1237)
..++.|.+|.+|| +.|.|++|+.++++.||+....+ +..++++....
T Consensus 316 ----------------------------~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~----~e~~~~v~~~d 362 (852)
T TIGR03346 316 ----------------------------KYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKER----YEVHHGVRITD 362 (852)
T ss_pred ----------------------------HHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHH----hccccCCCCCH
Confidence 2234689999999 78999999999999999876544 67788888777
Q ss_pred HHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCC--c--ccc--------cccch-----------
Q 000888 828 TVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--D--ARL--------VLSCE----------- 884 (1237)
Q Consensus 828 ~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~--~--~~l--------~l~~e----------- 884 (1237)
.++. .+.+|...|+.++.+++++|+.+...++...+.....|.. . .++ .+..+
T Consensus 363 ~~i~----~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (852)
T TIGR03346 363 PAIV----AAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLED 438 (852)
T ss_pred HHHH----HHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 7776 4578889999999999999999988877666653333310 0 000 00000
Q ss_pred ------hhhhHHHHHHHH--------------HHh----------------------------------hhhhh------
Q 000888 885 ------SIQYGIGIFQAI--------------QNE----------------------------------SKSLK------ 904 (1237)
Q Consensus 885 ------d~~~al~~lq~i--------------~~~----------------------------------~k~~k------ 904 (1237)
.+..-+..+... ... ...+.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (852)
T TIGR03346 439 LEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEE 518 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhc
Confidence 000000000000 000 00000
Q ss_pred ---hcccccCCHHHHHHHHhcCcCCCCCCCccc--------------hhccccHHHHHHHHHHHhCccCchhhhhcCCCC
Q 000888 905 ---KSLKDVVTENEFEKRLLADVIPPSDIGVTF--------------DDIGALENVKDTLKELVMLPLQRPELFCKGQLT 967 (1237)
Q Consensus 905 ---~~~k~~v~~~e~e~~ll~~ii~~~~~~vtf--------------~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~ 967 (1237)
......++.+++.. +++.++..+...+.- ..+.|++...+.+...+...... -....
T Consensus 519 ~~~~l~~~~v~~~~i~~-v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g-----l~~~~ 592 (852)
T TIGR03346 519 TKPRLLREEVTAEEIAE-VVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG-----LSDPN 592 (852)
T ss_pred cccccccCCcCHHHHHH-HHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc-----CCCCC
Confidence 00112345555544 444444333322222 23566666666666555421000 00123
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-----ccccccHHHH-----HHHHHHHHhcCCcEEE
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIF 1034 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s-----~~~G~se~~I-----~~lF~~A~k~~PsILf 1034 (1237)
+|...+||+||+|||||++|+++|..+ +.++++++|+++.. ..+|.+..++ ..+....++.+.+|||
T Consensus 593 ~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vll 672 (852)
T TIGR03346 593 RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVL 672 (852)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEE
Confidence 566679999999999999999999988 57899999987633 2333332222 3455666777788999
Q ss_pred EccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCccc-------CCccEEEEEecCCCC---------------------
Q 000888 1035 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF--------------------- 1086 (1237)
Q Consensus 1035 IDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p~--------------------- 1086 (1237)
|||||.+ +..+.+.|++.++..... +-.+.+||+|||...
T Consensus 673 lDeieka------------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~ 740 (852)
T TIGR03346 673 FDEVEKA------------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVME 740 (852)
T ss_pred EeccccC------------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHH
Confidence 9999966 245566666666543211 125688999999721
Q ss_pred ----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh-------CCCC---ChhhHHHHHHHc--CCCcHHHHHHHHHH
Q 000888 1087 ----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS---PDVDFDAIANMT--DGYSGSDLKNLCVT 1150 (1237)
Q Consensus 1087 ----~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~-------~~l~---~d~dl~~LA~~T--~GySgaDL~~L~~~ 1150 (1237)
.+.|+|+.|++.++.|.+++.++..+|+...+.. .++. ++..++.|++.. ..+..+.|+++++.
T Consensus 741 ~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~ 820 (852)
T TIGR03346 741 VLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQR 820 (852)
T ss_pred HHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHH
Confidence 1447788899999999999999999998887752 1111 333456666653 25677888888888
Q ss_pred HHHHHHHH
Q 000888 1151 AAHRPIKE 1158 (1237)
Q Consensus 1151 Aa~~aire 1158 (1237)
....++.+
T Consensus 821 ~i~~~l~~ 828 (852)
T TIGR03346 821 EIENPLAK 828 (852)
T ss_pred HHHHHHHH
Confidence 87766654
No 42
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-27 Score=293.93 Aligned_cols=266 Identities=35% Similarity=0.548 Sum_probs=223.9
Q ss_pred CCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISM 1003 (1237)
Q Consensus 929 ~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~ 1003 (1237)
+..+.|++++|++.++..|+++|..|+.+|+.|...++. |++|||||||||||||..|+|+|..+ .+.|+.-..
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 446899999999999999999999999999999988865 55999999999999999999999988 466777788
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecC
Q 000888 1004 SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1237)
Q Consensus 1004 seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1237)
++..++|+|+.+..++.+|+.|++.+|+|||+||||-|.+.|.... ...+..++.+||.+|+|+.. .+.|+||++||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGlds--RgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDS--RGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCC--CCceEEEcccC
Confidence 8999999999999999999999999999999999999988875433 34567889999999999975 57899999999
Q ss_pred CCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 000888 1084 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 1160 (1237)
Q Consensus 1084 ~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil 1160 (1237)
+++.+|++++| ||++.++|++|+.+.|.+|+..+..+..-. ...-+..||+.+.||.|+||+.||.+|+..++++-.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 999999999999999999999987665422 345578899999999999999999999999888632
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 000888 1161 EKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1208 (1237)
Q Consensus 1161 ~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e 1208 (1237)
-.... ...+.... .....|...||..|+.++.|+...+
T Consensus 495 Pq~y~------s~~kl~~d----~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYS------SSDKLLID----VALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred Ceeec------cccccccc----chhhhhhhHhhhhhhhccCCCCCcc
Confidence 11110 00111111 1123489999999999999887764
No 43
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=7.6e-27 Score=299.33 Aligned_cols=205 Identities=21% Similarity=0.293 Sum_probs=166.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc----------cc-------------------------
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW----------FG------------------------- 1012 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~----------~G------------------------- 1012 (1237)
+|++||||+||||||||+||+|+|.++++||+.+++++++..+ .|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 5779999999999999999999999999999999999988644 11
Q ss_pred ------ccHH--HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcc-cCCccEEEEEecC
Q 000888 1013 ------EGEK--YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDTERILVLAATN 1083 (1237)
Q Consensus 1013 ------~se~--~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~-~~~~~VlVIaTTN 1083 (1237)
..+. .++.+|+.|++.+||||||||||.+...... ...+++|+..|++... ....+|+||||||
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~-------~ltL~qLLneLDg~~~~~s~~~VIVIAATN 1780 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN-------YLSLGLLVNSLSRDCERCSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc-------eehHHHHHHHhccccccCCCCCEEEEEeCC
Confidence 1222 3788999999999999999999999754211 1246788888887642 2346899999999
Q ss_pred CCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhh--CCCCC-hhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 000888 1084 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAK--EDLSP-DVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1158 (1237)
Q Consensus 1084 ~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~--~~l~~-d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aire 1158 (1237)
+|+.||||++| |||+.|.|+.|+..+|.+++..++.. ..+.. .++++.+|+.|.||+|+||.+||++|+..++++
T Consensus 1781 RPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1781 IPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred CcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999 99999999999999999998876533 33333 357999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCc
Q 000888 1159 ILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 1205 (1237)
Q Consensus 1159 il~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~ 1205 (1237)
- ...|+++||+.|+.++....
T Consensus 1861 ~--------------------------ks~Id~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1861 K--------------------------KSIIDTNTIRSALHRQTWDL 1881 (2281)
T ss_pred C--------------------------CCccCHHHHHHHHHHHHhhh
Confidence 1 13466777777777665443
No 44
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.94 E-value=9.9e-26 Score=286.99 Aligned_cols=379 Identities=19% Similarity=0.247 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc-----CCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCcc
Q 000888 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 747 (1237)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~-----~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~ 747 (1237)
.+..+..+++.+.. ..+|+||||||+|.+++ |..+..+.|+++|++ |.+.|||+||..++
T Consensus 255 ~e~~lk~~~~~~~~--~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~----------- 319 (857)
T PRK10865 255 FEERLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEY----------- 319 (857)
T ss_pred hHHHHHHHHHHHHH--cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHH-----------
Confidence 34455555554432 26899999999999985 567889999999955 99999999999875
Q ss_pred ccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHH
Q 000888 748 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLR 827 (1237)
Q Consensus 748 l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~ 827 (1237)
+..++.|.+|.||| +.|.|.+|+.++++.||+.... .+..+|++....
T Consensus 320 ---------------------------r~~~~~d~al~rRf-~~i~v~eP~~~~~~~iL~~l~~----~~e~~~~v~~~d 367 (857)
T PRK10865 320 ---------------------------RQYIEKDAALERRF-QKVFVAEPSVEDTIAILRGLKE----RYELHHHVQITD 367 (857)
T ss_pred ---------------------------HHHhhhcHHHHhhC-CEEEeCCCCHHHHHHHHHHHhh----hhccCCCCCcCH
Confidence 22345689999999 6899999999999999986654 367778888777
Q ss_pred HHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCC--c--ccc--------cccchh----------
Q 000888 828 TVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--D--ARL--------VLSCES---------- 885 (1237)
Q Consensus 828 ~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~--~--~~l--------~l~~ed---------- 885 (1237)
.++.. ++.|...++.+..+++++++.+...+....+.....|.. . ..+ .+..+.
T Consensus 368 ~a~~~----a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~ 443 (857)
T PRK10865 368 PAIVA----AATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDM 443 (857)
T ss_pred HHHHH----HHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77663 457777888899999999998876666554443322210 0 000 000000
Q ss_pred hhhHHHHHHH----H-------H----------Hhhhhhh----------------------------------------
Q 000888 886 IQYGIGIFQA----I-------Q----------NESKSLK---------------------------------------- 904 (1237)
Q Consensus 886 ~~~al~~lq~----i-------~----------~~~k~~k---------------------------------------- 904 (1237)
+...+..+++ + . .+...+.
T Consensus 444 l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (857)
T PRK10865 444 LNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKT 523 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccc
Confidence 0000000000 0 0 0000000
Q ss_pred -hcccccCCHHHHHHHHhcCcCCCCCCCccc--------------hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCC
Q 000888 905 -KSLKDVVTENEFEKRLLADVIPPSDIGVTF--------------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP 969 (1237)
Q Consensus 905 -~~~k~~v~~~e~e~~ll~~ii~~~~~~vtf--------------~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP 969 (1237)
..+...++.+++.. +++.++..+...+.- ..+.|++...+.+...+...... -....+|
T Consensus 524 ~~~~~~~v~~~~i~~-vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~g-----l~~~~~p 597 (857)
T PRK10865 524 MRLLRNKVTDAEIAE-VLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAG-----LSDPNRP 597 (857)
T ss_pred cccccCccCHHHHHH-HHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhc-----ccCCCCC
Confidence 00012245555543 445554444333222 24667777766666666421000 0011345
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-----ccccccHHHH-----HHHHHHHHhcCCcEEEEc
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVD 1036 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s-----~~~G~se~~I-----~~lF~~A~k~~PsILfID 1036 (1237)
...+||+||+|||||++|++||+.+ +.+++.++|+++.. ..+|.+..++ ..+....+..+.+|||||
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllD 677 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLD 677 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEe
Confidence 4579999999999999999999987 56799999987643 2233322221 223444455666999999
Q ss_pred cchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcc-------cCCccEEEEEecCCC------------------------
Q 000888 1037 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDTERILVLAATNRP------------------------ 1085 (1237)
Q Consensus 1037 EID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~-------~~~~~VlVIaTTN~p------------------------ 1085 (1237)
||+.+- ..+.+.|+..++.... .+-.+.+||+|||..
T Consensus 678 Eieka~------------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~ 745 (857)
T PRK10865 678 EVEKAH------------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVV 745 (857)
T ss_pred ehhhCC------------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHH
Confidence 999661 3455566666653211 122466889999862
Q ss_pred -CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000888 1086 -FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1237)
Q Consensus 1086 -~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~ 1120 (1237)
..+.|+|++|++.++.|.+++.++..+|++.++..
T Consensus 746 ~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 746 SHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred cccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 13457899999999999999999999999887754
No 45
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.8e-27 Score=270.42 Aligned_cols=263 Identities=28% Similarity=0.438 Sum_probs=213.7
Q ss_pred ccchh--ccccHHHHHH-HHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccc
Q 000888 932 VTFDD--IGALENVKDT-LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSIT 1007 (1237)
Q Consensus 932 vtf~d--I~Gle~vK~~-L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-~fi~Id~seL~ 1007 (1237)
..|++ |+|++.-... .++.......-|+...+.++ +..+|+|||||||||||.+||.|.+.|++ +---++.+++.
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL 294 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 294 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH
Confidence 44554 5888766644 44555555566777777775 44589999999999999999999999964 44558899999
Q ss_pred cccccccHHHHHHHHHHHHhc--------CCcEEEEccchhhhcCCCCCch-hHHHHHHHHHHHHHhcCCcccCCccEEE
Q 000888 1008 SKWFGEGEKYVKAVFSLASKI--------APSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILV 1078 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~--------~PsILfIDEID~L~~~r~~~~~-~~a~~~il~eLL~~ldgl~~~~~~~VlV 1078 (1237)
++|+|++|++++.+|..|..- ...||++||||.++..|++... ...+..++|+||..|||...- .+++|
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNILV 372 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNILV 372 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEEE
Confidence 999999999999999988532 3459999999999988876443 557789999999999998653 68999
Q ss_pred EEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhC----CCCChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1079 LAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE----DLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1079 IaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~----~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
|+-||+++.+|++++| ||...+++.+||...|.+|++.+.+++ .+.+++|+++||.+|..|||++|..|++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999988654 3568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 000888 1153 HRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1208 (1237)
Q Consensus 1153 ~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e 1208 (1237)
..|+.|.+....+... .....+...|+++||..|+++|+|++-..
T Consensus 453 S~A~nR~vk~~~~~~~-----------~~~~~e~lkV~r~DFl~aL~dVkPAFG~s 497 (744)
T KOG0741|consen 453 SFAMNRHVKAGGKVEV-----------DPVAIENLKVTRGDFLNALEDVKPAFGIS 497 (744)
T ss_pred HHHHHhhhccCcceec-----------CchhhhheeecHHHHHHHHHhcCcccCCC
Confidence 9988886644311110 01112335799999999999999998543
No 46
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=4.5e-25 Score=250.84 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=157.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHh-----cCCcEEEEccchhh
Q 000888 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPSVIFVDEVDSM 1041 (1237)
Q Consensus 967 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k-----~~PsILfIDEID~L 1041 (1237)
.+++.+++||||||||||++|+++|++++++|+.++.++|.++|.|++|+.++++|..|+. .+||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 4677999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred hcCCCCCchhHHHHHH-HHHHHHHhcCCc----------ccCCccEEEEEecCCCCCCcHHHHh--hccccccCCCCCHH
Q 000888 1042 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAP 1108 (1237)
Q Consensus 1042 ~~~r~~~~~~~a~~~i-l~eLL~~ldgl~----------~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~e 1108 (1237)
++.+... ......++ ..+||.++|+.. .....+|+||+|||+|+.||++++| ||++.+ ..|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9988632 23333444 478999888641 1345789999999999999999999 999865 589999
Q ss_pred HHHHHHHHHHhhCCCCChhhHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHHH
Q 000888 1109 NRAKILQVILAKEDLSPDVDFDAIANMTDG----YSGSDLKNLCVTAAHRPIKEI 1159 (1237)
Q Consensus 1109 eR~eILk~~L~~~~l~~d~dl~~LA~~T~G----ySgaDL~~L~~~Aa~~airei 1159 (1237)
+|.+||+.++++.++. ..++..|+..+.| |.|+--..+...+....+.+.
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999988775 6888889988876 456555566666666655554
No 47
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-26 Score=256.36 Aligned_cols=233 Identities=19% Similarity=0.290 Sum_probs=195.8
Q ss_pred HHHHHHHhcccCCccccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHH
Q 000888 408 VFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKA 487 (1237)
Q Consensus 408 ~~~~~~~~~i~~~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakA 487 (1237)
-|+.-+...+|.+.+|.|+|++---. |.+|+.|.+.+..+|+++++++++ .|...++.|||.|||| +.+.|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~g-~Ll~p~kGiLL~GPpG--~GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAKG-KLLRPPKGILLYGPPG--TGKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhccc-ccccCCccceecCCCC--chHHHHHHH
Confidence 36777899999999999999993333 999999999999999999999865 5888999999999999 999999999
Q ss_pred HHhHhCCeEEEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000888 488 LAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPK 567 (1237)
Q Consensus 488 LA~~f~a~ll~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1237)
+|++-||.++.|+.+.+.+
T Consensus 147 ~Akeaga~fInv~~s~lt~------------------------------------------------------------- 165 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLTS------------------------------------------------------------- 165 (386)
T ss_pred HHHHcCCCcceeeccccch-------------------------------------------------------------
Confidence 9999999999888644432
Q ss_pred ccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCC
Q 000888 568 METDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGG 647 (1237)
Q Consensus 568 ~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~ 647 (1237)
T Consensus 166 -------------------------------------------------------------------------------- 165 (386)
T KOG0737|consen 166 -------------------------------------------------------------------------------- 165 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----cchhhhHHHHH-----
Q 000888 648 QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFKSRL----- 718 (1237)
Q Consensus 648 ~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~----~~~~~~lk~~L----- 718 (1237)
||-|| ++.++.++|.++.+ .+|.|||||||+.+++.+ -++....|..|
T Consensus 166 ------------------KWfgE--~eKlv~AvFslAsK---l~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD 222 (386)
T KOG0737|consen 166 ------------------KWFGE--AQKLVKAVFSLASK---LQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD 222 (386)
T ss_pred ------------------hhHHH--HHHHHHHHHhhhhh---cCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc
Confidence 45556 77899999999997 999999999999999732 23333344333
Q ss_pred ---hcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEe
Q 000888 719 ---EKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIH 795 (1237)
Q Consensus 719 ---~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~ 795 (1237)
.+-+..|+|+||||++-+ +|+|+-||||..|.|+
T Consensus 223 Gl~s~~~~rVlVlgATNRP~D-------------------------------------------lDeAiiRR~p~rf~V~ 259 (386)
T KOG0737|consen 223 GLSSKDSERVLVLGATNRPFD-------------------------------------------LDEAIIRRLPRRFHVG 259 (386)
T ss_pred cccCCCCceEEEEeCCCCCcc-------------------------------------------HHHHHHHhCcceeeeC
Confidence 222336999999999853 6899999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHH
Q 000888 796 MPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAE 856 (1237)
Q Consensus 796 LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie 856 (1237)
+|+.++|.+||+-.|.. -++..+++..+.+-.+.||+|.||+.+|..+.+.+...+.
T Consensus 260 lP~~~qR~kILkviLk~----e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 260 LPDAEQRRKILKVILKK----EKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred CCchhhHHHHHHHHhcc----cccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 99999999999987754 4555889999999999999999999999999987755444
No 48
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.5e-24 Score=237.89 Aligned_cols=235 Identities=17% Similarity=0.294 Sum_probs=188.7
Q ss_pred ccccccccccccccchhHHHHHHHHhhhcccCCccc-ccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 000888 421 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 499 (1237)
Q Consensus 421 ~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~ 499 (1237)
+.-+|||++.... |..+..|.+++=.+|+|++++ +-+ + -.++.|||+|||| ..+++||||.||+-+|.||=+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~G--I-~PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEELG--I-DPPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHcC--C-CCCCceEeeCCCC--CcHHHHHHHHHhccCceEEEe
Confidence 3456888885554 888889999999999999986 333 2 3567999999999 799999999999999999865
Q ss_pred eccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000888 500 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 579 (1237)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1237)
=.| +|-+
T Consensus 217 vgS----------------------------------ElVq--------------------------------------- 223 (406)
T COG1222 217 VGS----------------------------------ELVQ--------------------------------------- 223 (406)
T ss_pred ccH----------------------------------HHHH---------------------------------------
Confidence 321 1222
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCcccccc
Q 000888 580 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 659 (1237)
Q Consensus 580 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 659 (1237)
||+|.
T Consensus 224 ------------KYiGE--------------------------------------------------------------- 228 (406)
T COG1222 224 ------------KYIGE--------------------------------------------------------------- 228 (406)
T ss_pred ------------HHhcc---------------------------------------------------------------
Confidence 67772
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhhHHHHH----hcC-----CCcEE
Q 000888 660 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRL----EKL-----PDKVI 726 (1237)
Q Consensus 660 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~----~~~~~~~~lk~~L----~~l-----~g~vv 726 (1237)
.-++++.||+.+.+ +.|+||||||||.+-+ .+......+|.+| ..+ .|+|-
T Consensus 229 -------------GaRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 229 -------------GARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred -------------chHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE
Confidence 23599999999999 9999999999998665 2233344555554 333 46999
Q ss_pred EEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 000888 727 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 806 (1237)
Q Consensus 727 vIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~Iw 806 (1237)
||.|||+.|--||| |-|||| |+++|+|++|+.++|.+||
T Consensus 293 VI~ATNR~D~LDPA-------LLRPGR----------------------------------~DRkIEfplPd~~gR~~Il 331 (406)
T COG1222 293 VIMATNRPDILDPA-------LLRPGR----------------------------------FDRKIEFPLPDEEGRAEIL 331 (406)
T ss_pred EEEecCCccccChh-------hcCCCc----------------------------------ccceeecCCCCHHHHHHHH
Confidence 99999999988999 888888 8899999999999999999
Q ss_pred HHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhh
Q 000888 807 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESI 886 (1237)
Q Consensus 807 K~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~ 886 (1237)
++|+.+ ..+..++++...+-.+.|++||||+++|+++-++ |+ ++.+..++++||
T Consensus 332 ~IHtrk----M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~-----------Ai-----------R~~R~~Vt~~DF 385 (406)
T COG1222 332 KIHTRK----MNLADDVDLELLARLTEGFSGADLKAICTEAGMF-----------AI-----------RERRDEVTMEDF 385 (406)
T ss_pred HHHhhh----ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHH-----------HH-----------HhccCeecHHHH
Confidence 999976 5678888888888899999999999999987662 22 346777899999
Q ss_pred hhHHHHH
Q 000888 887 QYGIGIF 893 (1237)
Q Consensus 887 ~~al~~l 893 (1237)
..|...+
T Consensus 386 ~~Av~KV 392 (406)
T COG1222 386 LKAVEKV 392 (406)
T ss_pred HHHHHHH
Confidence 9887744
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.8e-21 Score=228.61 Aligned_cols=250 Identities=23% Similarity=0.325 Sum_probs=200.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1050 (1237)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|++.+|+||||-++|.+....+.. .
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgg-e 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG-E 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCc-h
Confidence 579999999999999999999999999999999999999999999999999999999999999999999997555442 2
Q ss_pred hHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHH
Q 000888 1051 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFD 1130 (1237)
Q Consensus 1051 ~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~ 1130 (1237)
.......++.++. .+... ....+++||++|+..+.+++.+++.|..+|.++.|+.++|.+||+.++....+..++...
T Consensus 511 d~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 2223344444444 22222 245789999999999999999999998999999999999999999999999888999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccccc
Q 000888 1131 AIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESV 1210 (1237)
Q Consensus 1131 ~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s~e~~ 1210 (1237)
.+|.+|.||+.++|..++..+-..+..++.++.....-... ....-+.....++++||.+|+.+++..++....
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~------~~~~~~~~~~~l~~edf~kals~~~~~fs~aiG 662 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEE------DEGELCAAGFLLTEEDFDKALSRLQKEFSDAIG 662 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhc------cccccccccceecHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999988855444444333210000000 011122345789999999999999988886655
Q ss_pred c-hhhhHHHHHHhcCCCCcc
Q 000888 1211 N-MSELLQWNELYGEGGSRR 1229 (1237)
Q Consensus 1211 ~-~~~lvkW~diyG~~gsrk 1229 (1237)
+ ..|.+.|+|+||.+..|.
T Consensus 663 APKIPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCCCCccchhcccCHHHHHH
Confidence 4 679999999999875543
No 50
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.7e-20 Score=207.88 Aligned_cols=249 Identities=17% Similarity=0.253 Sum_probs=188.7
Q ss_pred ccccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 000888 421 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 500 (1237)
Q Consensus 421 ~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d 500 (1237)
++.+|.||+.=-. ++.|.+|-+|+..++..++|++.. -..=+.|||-|||| ..++|||||+|-+.|..|..|-
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~Gi---rrPWkgvLm~GPPG--TGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFKGI---RRPWKGVLMVGPPG--TGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHhhc---ccccceeeeeCCCC--CcHHHHHHHHHHhhcCeEEEec
Confidence 4667999984433 899999999999999999998875 45668999999999 7999999999999886555544
Q ss_pred ccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000888 501 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 580 (1237)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 580 (1237)
|+.|
T Consensus 278 sstl---------------------------------------------------------------------------- 281 (491)
T KOG0738|consen 278 SSTL---------------------------------------------------------------------------- 281 (491)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 3222
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCccccccc
Q 000888 581 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 660 (1237)
Q Consensus 581 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 660 (1237)
T Consensus 282 -------------------------------------------------------------------------------- 281 (491)
T KOG0738|consen 282 -------------------------------------------------------------------------------- 281 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--CC---cchhhhHHHHHhc-CC------Cc---E
Q 000888 661 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--GN---SDSYSTFKSRLEK-LP------DK---V 725 (1237)
Q Consensus 661 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~--~~---~~~~~~lk~~L~~-l~------g~---v 725 (1237)
.|||-|| ++.+++.|||.+.. .-|.+|||||||.+.+ |+ -+....||+.|.- ++ .+ |
T Consensus 282 ---tSKwRGe--SEKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~V 353 (491)
T KOG0738|consen 282 ---TSKWRGE--SEKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVV 353 (491)
T ss_pred ---hhhhccc--hHHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeE
Confidence 2466677 88999999999999 9999999999999886 22 3455567777721 11 24 9
Q ss_pred EEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHH
Q 000888 726 IVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLAS 805 (1237)
Q Consensus 726 vvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~I 805 (1237)
.|+.|||.+-+ +|+||.|||+..|+|+||+.++|...
T Consensus 354 mVLAATN~PWd-------------------------------------------iDEAlrRRlEKRIyIPLP~~~~R~~L 390 (491)
T KOG0738|consen 354 MVLAATNFPWD-------------------------------------------IDEALRRRLEKRIYIPLPDAEARSAL 390 (491)
T ss_pred EEEeccCCCcc-------------------------------------------hHHHHHHHHhhheeeeCCCHHHHHHH
Confidence 99999999874 68889999999999999999999999
Q ss_pred HHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchH-HHHHHHHHHHHhhhhcCCCCCCcccccccch
Q 000888 806 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNE-SAEKIVGWALSHHLMQNPEADPDARLVLSCE 884 (1237)
Q Consensus 806 wK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~-~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~e 884 (1237)
+++.|.. ....+.+++...+-...||+|+||..+|.++.+..+- .|.++-.--+.. .....-+.++..+
T Consensus 391 i~~~l~~----~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~------lakE~~~~pv~~~ 460 (491)
T KOG0738|consen 391 IKILLRS----VELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQ------LAKEEPKMPVTNE 460 (491)
T ss_pred HHHhhcc----ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhh------hhhhccccccchh
Confidence 9988854 7778888888888889999999999999987663322 121111111100 0001233677888
Q ss_pred hhhhHHHHH
Q 000888 885 SIQYGIGIF 893 (1237)
Q Consensus 885 d~~~al~~l 893 (1237)
||+.|+...
T Consensus 461 Dfe~Al~~v 469 (491)
T KOG0738|consen 461 DFEEALRKV 469 (491)
T ss_pred hHHHHHHHc
Confidence 888776633
No 51
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=7e-19 Score=199.34 Aligned_cols=237 Identities=17% Similarity=0.243 Sum_probs=169.7
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccc
Q 000888 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSS 1005 (1237)
Q Consensus 935 ~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP--~~gVLL~GPPGTGKT~LAkAIA~eL-------g~~fi~Id~se 1005 (1237)
.+++|++++|+++++++.+ +.....+.+.++..+ ..++||+||||||||++|+++|+.+ ..+++.++..+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3789999999999998865 333444444444333 3469999999999999999999986 23689999999
Q ss_pred cccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC
Q 000888 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1237)
Q Consensus 1006 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1237)
+.+.+.|..+..+..+|+.|. ++||||||++.|...+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 999999988877888888764 489999999998643321 123355667777777653 2457777777642
Q ss_pred -----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHH----H--cCCCc-HHHHHHHHHHHH
Q 000888 1086 -----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIAN----M--TDGYS-GSDLKNLCVTAA 1152 (1237)
Q Consensus 1086 -----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~----~--T~GyS-gaDL~~L~~~Aa 1152 (1237)
..++|++++||+..|.|+.++.+++.+|++.++.+.... .+.....+.. . ...|. +++++++++.|.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 245699999999999999999999999999999876533 2222233332 2 23444 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHH
Q 000888 1153 HRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKY 1196 (1237)
Q Consensus 1153 ~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~ 1196 (1237)
.+...|++...... .+..++..++.+||.+
T Consensus 252 ~~~~~r~~~~~~~~--------------~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGGRV--------------LTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCCCC--------------CCHHHHhCCCHHHHhH
Confidence 88777765432100 1122456778888754
No 52
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.78 E-value=2.6e-18 Score=194.53 Aligned_cols=214 Identities=16% Similarity=0.231 Sum_probs=160.7
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecccc
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 1006 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~k--P~~gVLL~GPPGTGKT~LAkAIA~eLg-------~~fi~Id~seL 1006 (1237)
+++|++++|+++.+++.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+|+.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998876 44555555544432 456899999999999999999998772 37999999999
Q ss_pred ccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC-
Q 000888 1007 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP- 1085 (1237)
Q Consensus 1007 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p- 1085 (1237)
.+.++|.++..+..+|+.|.. +||||||++.|...+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 989999988888888887744 89999999998643321 123345666777777653 3567787777642
Q ss_pred -C---CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHc------C-CCcHHHHHHHHHHHHH
Q 000888 1086 -F---DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT------D-GYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1086 -~---~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T------~-GySgaDL~~L~~~Aa~ 1153 (1237)
+ .++|++.+||...|.|+.++.+++.+|++.++.+.... +......++.+. + --++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999876543 223334444431 2 2358999999999988
Q ss_pred HHHHHHH
Q 000888 1154 RPIKEIL 1160 (1237)
Q Consensus 1154 ~aireil 1160 (1237)
+...++.
T Consensus 252 ~~~~r~~ 258 (284)
T TIGR02880 252 RQANRLF 258 (284)
T ss_pred HHHHHHh
Confidence 7766654
No 53
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.4e-18 Score=206.64 Aligned_cols=237 Identities=22% Similarity=0.291 Sum_probs=187.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 1046 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL----g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1046 (1237)
.+|||+||+|+|||.|++++++++ -+++..++|+.+.+.......+.+..+|..+.+++|+||++|++|.|++...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 589999999999999999999998 4677889999998887777888899999999999999999999999998443
Q ss_pred CCch-hHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000888 1047 NPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDL 1123 (1237)
Q Consensus 1047 ~~~~-~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l 1123 (1237)
+... .......+..++..+-....+.+..+.||||.+....|++.+.+ +|+.++.++.|+..+|.+||+..+.+...
T Consensus 512 ~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~ 591 (952)
T KOG0735|consen 512 NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS 591 (952)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh
Confidence 3222 12223334444443333334556788999999999999998887 89999999999999999999999987653
Q ss_pred C-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000888 1124 S-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1202 (1237)
Q Consensus 1124 ~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~ 1202 (1237)
. ...|++-++..|+||...||..++.+|.+.++.+.+. .....||.++|.++++.+.
T Consensus 592 ~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris----------------------~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 592 DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS----------------------NGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc----------------------cCcccchHHHHHHHHHhcC
Confidence 2 2334555999999999999999999999988744210 0112699999999999999
Q ss_pred cCccccccchhhh-HHHHHHhcCCCCcc
Q 000888 1203 ASVSSESVNMSEL-LQWNELYGEGGSRR 1229 (1237)
Q Consensus 1203 pS~s~e~~~~~~l-vkW~diyG~~gsrk 1229 (1237)
|...++.....+- .+|.|++|-...|+
T Consensus 650 P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 650 PLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred hHHhhhccccccCCCCceecccHHHHHH
Confidence 9988776554433 78999999765543
No 54
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.7e-18 Score=193.83 Aligned_cols=206 Identities=27% Similarity=0.456 Sum_probs=163.3
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1012 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G 1012 (1237)
.+++++....+++.+..+.... .+. .....|.++||||||||||||++|+.||...|..+-.+...++.. .-.
T Consensus 353 pl~~ViL~psLe~Rie~lA~aT-aNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~ 425 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIAT-ANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGA 425 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHh-ccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cch
Confidence 4777888888888887766431 111 112456789999999999999999999999999998888877632 122
Q ss_pred ccHHHHHHHHHHHHhcCCc-EEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHH
Q 000888 1013 EGEKYVKAVFSLASKIAPS-VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEA 1091 (1237)
Q Consensus 1013 ~se~~I~~lF~~A~k~~Ps-ILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~a 1091 (1237)
..-..|.++|+.|.++..+ +|||||.|.++..|......++.+..+|.||---- .....++++.+||+|.+||.+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG----dqSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc----ccccceEEEeccCCccchhHH
Confidence 3456789999999998765 77899999999999887788888999998874322 224678899999999999999
Q ss_pred HHhhccccccCCCCCHHHHHHHHHHHHhhCCCC---------------------------ChhhHHHHHHHcCCCcHHHH
Q 000888 1092 VIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS---------------------------PDVDFDAIANMTDGYSGSDL 1144 (1237)
Q Consensus 1092 LlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~---------------------------~d~dl~~LA~~T~GySgaDL 1144 (1237)
+-.|||.+|+|++|..++|.++|..++.+.-+. .+..+.+.|+.|+||||++|
T Consensus 502 V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 999999999999999999999999988753211 11225778999999999999
Q ss_pred HHHHH
Q 000888 1145 KNLCV 1149 (1237)
Q Consensus 1145 ~~L~~ 1149 (1237)
..|+.
T Consensus 582 akLva 586 (630)
T KOG0742|consen 582 AKLVA 586 (630)
T ss_pred HHHHH
Confidence 98864
No 55
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=3.3e-18 Score=191.27 Aligned_cols=216 Identities=16% Similarity=0.231 Sum_probs=155.9
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISM 1003 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~--kP~~gVLL~GPPGTGKT~LAkAIA~eL-------g~~fi~Id~ 1003 (1237)
.+++++|++++|+.+++++.+...+.. ..+.+.. ....++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEK-RKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 357899999999999998876543322 2222222 223579999999999999999999875 347889999
Q ss_pred cccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecC
Q 000888 1004 SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1237)
Q Consensus 1004 seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1237)
+++.+.++|+.+..++.+|..|. .+||||||+|.|..... .......++.|+..++.. ..++++|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCC
Confidence 99999999999999999998775 48999999999853211 122244566777777653 24456665554
Q ss_pred CC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHc---------CCCcHHHHHHHH
Q 000888 1084 RP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT---------DGYSGSDLKNLC 1148 (1237)
Q Consensus 1084 ~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T---------~GySgaDL~~L~ 1148 (1237)
.. ..++|++++||+..|.|+.++.+++.+|++.++...+.. ++..+..|+... ..-.++.+.+++
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 32 247889999999899999999999999999999876543 233344443321 123578888888
Q ss_pred HHHHHHHHHHHH
Q 000888 1149 VTAAHRPIKEIL 1160 (1237)
Q Consensus 1149 ~~Aa~~aireil 1160 (1237)
+.|..+...+++
T Consensus 232 e~a~~~~~~r~~ 243 (261)
T TIGR02881 232 EKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHh
Confidence 888877666554
No 56
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.6e-18 Score=191.91 Aligned_cols=194 Identities=28% Similarity=0.405 Sum_probs=153.9
Q ss_pred CCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------C
Q 000888 925 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------G 995 (1237)
Q Consensus 925 i~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---------g 995 (1237)
.|..+..--|+.++=-.++|+.|..++...+...+.-....+....+-+|||||||||||+|++|+|+.+ .
T Consensus 132 LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~ 211 (423)
T KOG0744|consen 132 LPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYK 211 (423)
T ss_pred ccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCcccc
Confidence 3444445567777777789999998887655544433333333333569999999999999999999998 3
Q ss_pred CcEEEEeccccccccccccHHHHHHHHHHHHhcC---C--cEEEEccchhhhcCCCC---CchhHHHHHHHHHHHHHhcC
Q 000888 996 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIA---P--SVIFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDG 1067 (1237)
Q Consensus 996 ~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~---P--sILfIDEID~L~~~r~~---~~~~~a~~~il~eLL~~ldg 1067 (1237)
..++.+++..++++|++++.+.+.++|......- . -.++|||++.|...|.. ..+....-+++|.+|+++|.
T Consensus 212 ~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr 291 (423)
T KOG0744|consen 212 GQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR 291 (423)
T ss_pred ceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Confidence 4688999999999999999999999998776542 2 35669999999876632 22333445788999999999
Q ss_pred CcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000888 1068 LRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1237)
Q Consensus 1068 l~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~ 1120 (1237)
+.. ..+|++++|+|-.+.||.++..|-|.+.+++.|+.+.|.+|++.++..
T Consensus 292 lK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 292 LKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred hcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 854 578999999999999999999999999999999999999999998764
No 57
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=3.9e-18 Score=168.38 Aligned_cols=130 Identities=38% Similarity=0.648 Sum_probs=115.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchh
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEH 1051 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~ 1051 (1237)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.+..+..+..+|..+.+.. |+||||||+|.++... .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999888 9999999999998776 33345
Q ss_pred HHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHH-hhccccccCCC
Q 000888 1052 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI-RRLPRRLMVNL 1104 (1237)
Q Consensus 1052 ~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLl-rRFd~~I~v~~ 1104 (1237)
.....+++.|+..++..... ..+++||+|||.++.+++.++ +||+..|++++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 56678888899999887643 467999999999999999999 99999888763
No 58
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.5e-18 Score=184.07 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=105.4
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhhHHHHHh-cC------CCcEEEEEe
Q 000888 662 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRLE-KL------PDKVIVIGS 730 (1237)
Q Consensus 662 ~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~----~~~~~~~~lk~~L~-~l------~g~vvvIGs 730 (1237)
|-.|||.|| ++.++..|||.+.+ +.|.||||||||.+.+ +-.+....+|..|. ++ ...|+|+|+
T Consensus 201 DLvSKWmGE--SEkLVknLFemARe---~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 201 DLVSKWMGE--SEKLVKNLFEMARE---NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHh---cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEec
Confidence 446899999 99999999999999 9999999999995443 33566667776662 22 358999999
Q ss_pred eccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000888 731 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 810 (1237)
Q Consensus 731 t~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL 810 (1237)
||.+-. .|.+|.|||+..|+|+||+..+|...++.|+
T Consensus 276 TNiPw~-------------------------------------------LDsAIRRRFekRIYIPLPe~~AR~~MF~lhl 312 (439)
T KOG0739|consen 276 TNIPWV-------------------------------------------LDSAIRRRFEKRIYIPLPEAHARARMFKLHL 312 (439)
T ss_pred CCCchh-------------------------------------------HHHHHHHHhhcceeccCCcHHHhhhhheecc
Confidence 998752 5899999999999999999999999999887
Q ss_pred hhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccc
Q 000888 811 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 849 (1237)
Q Consensus 811 ~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ 849 (1237)
-.--+.+..+ ++-+.+-.+-||+|+|+.-+ +.|++
T Consensus 313 G~tp~~LT~~---d~~eL~~kTeGySGsDisiv-VrDal 347 (439)
T KOG0739|consen 313 GDTPHVLTEQ---DFKELARKTEGYSGSDISIV-VRDAL 347 (439)
T ss_pred CCCccccchh---hHHHHHhhcCCCCcCceEEE-ehhhh
Confidence 5533333322 23344567889999999654 44444
No 59
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.74 E-value=1.4e-17 Score=200.22 Aligned_cols=228 Identities=18% Similarity=0.220 Sum_probs=164.9
Q ss_pred hhhhHHHHHHHHhcccCCccccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHH
Q 000888 403 SLRCAVFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQE 482 (1237)
Q Consensus 403 ~~~~~~~~~~~~~~i~~~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe 482 (1237)
..++|.+++. ++++-...+++|++.-.+ ++.|..|....-.+.. ....|+ + +.++.|||+|||| +.+.
T Consensus 206 ~~k~q~~~~~---~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKT 273 (489)
T CHL00195 206 EEKKQIISQT---EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKS 273 (489)
T ss_pred HHHHHHHhhh---ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHH
Confidence 3445555443 466666678889987775 8888888764322111 112333 3 4678999999999 8999
Q ss_pred HHHHHHHhHhCCeEEEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCC
Q 000888 483 MLAKALAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGP 562 (1237)
Q Consensus 483 ~LakALA~~f~a~ll~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1237)
+||||+|++++++|+.+|.+.|++
T Consensus 274 llAkaiA~e~~~~~~~l~~~~l~~-------------------------------------------------------- 297 (489)
T CHL00195 274 LTAKAIANDWQLPLLRLDVGKLFG-------------------------------------------------------- 297 (489)
T ss_pred HHHHHHHHHhCCCEEEEEhHHhcc--------------------------------------------------------
Confidence 999999999999999999754443
Q ss_pred CCCCcccccccccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCC
Q 000888 563 ESQPKMETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDG 642 (1237)
Q Consensus 563 ~~~~~~~~~~~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~ 642 (1237)
T Consensus 298 -------------------------------------------------------------------------------- 297 (489)
T CHL00195 298 -------------------------------------------------------------------------------- 297 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCc-----chhhh----
Q 000888 643 VDLGGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----DSYST---- 713 (1237)
Q Consensus 643 ~~l~~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~~-----~~~~~---- 713 (1237)
+|+|+ .+..++.+|+.+.. ..|+||||||||+++.+.. ...+.
T Consensus 298 -----------------------~~vGe--se~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~ 349 (489)
T CHL00195 298 -----------------------GIVGE--SESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLAT 349 (489)
T ss_pred -----------------------cccCh--HHHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHH
Confidence 12333 45578888988887 8999999999999886321 11222
Q ss_pred HHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEE
Q 000888 714 FKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVT 793 (1237)
Q Consensus 714 lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~Ie 793 (1237)
|-..|.....+|+|||+||+.+..||+ |.|+|| |+..|+
T Consensus 350 lL~~l~~~~~~V~vIaTTN~~~~Ld~a-------llR~GR----------------------------------FD~~i~ 388 (489)
T CHL00195 350 FITWLSEKKSPVFVVATANNIDLLPLE-------ILRKGR----------------------------------FDEIFF 388 (489)
T ss_pred HHHHHhcCCCceEEEEecCChhhCCHH-------HhCCCc----------------------------------CCeEEE
Confidence 222233345689999999999988888 677777 889999
Q ss_pred EeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccc
Q 000888 794 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 849 (1237)
Q Consensus 794 I~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ 849 (1237)
|++|+.++|.+||+.++.+.... ...+.+....+-.+.||+|+||+.+|.++..
T Consensus 389 v~lP~~~eR~~Il~~~l~~~~~~--~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 389 LDLPSLEEREKIFKIHLQKFRPK--SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred eCCcCHHHHHHHHHHHHhhcCCC--cccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999998773321 1235556666778889999999888876544
No 60
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-17 Score=195.07 Aligned_cols=243 Identities=21% Similarity=0.268 Sum_probs=179.4
Q ss_pred ccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 000888 423 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 502 (1237)
Q Consensus 423 ~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d~~ 502 (1237)
=+|.|+.||.- +..|..|.+++...+..++.. .+|.+.-+.|||-||+| -..+||+||+|-+.+|.|..+-.+
T Consensus 148 ~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F---~glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 148 RNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLF---LGLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred CcccccCCcch--hhHHHHhhhhhhhcccchHhh---hccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHH
Confidence 35779999988 889999999999999888774 25778888999999999 799999999999998876544332
Q ss_pred ccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 000888 503 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 582 (1237)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 582 (1237)
.|+
T Consensus 221 sLt----------------------------------------------------------------------------- 223 (428)
T KOG0740|consen 221 SLT----------------------------------------------------------------------------- 223 (428)
T ss_pred Hhh-----------------------------------------------------------------------------
Confidence 222
Q ss_pred cccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCccccccccc
Q 000888 583 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 662 (1237)
Q Consensus 583 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 662 (1237)
T Consensus 224 -------------------------------------------------------------------------------- 223 (428)
T KOG0740|consen 224 -------------------------------------------------------------------------------- 223 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC----cchhhhHHHHH--------hcCCCcEEEEEe
Q 000888 663 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFKSRL--------EKLPDKVIVIGS 730 (1237)
Q Consensus 663 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~----~~~~~~lk~~L--------~~l~g~vvvIGs 730 (1237)
+||+|| .+-+|.+||+|+.. .+|.|+||||||.+|..+ .+..-.++..+ .+-..+|+|||+
T Consensus 224 --sK~~Ge--~eK~vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 224 --SKYVGE--SEKLVRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred --hhccCh--HHHHHHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 467777 68899999999999 999999999999999722 12211222222 233559999999
Q ss_pred eccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000888 731 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 810 (1237)
Q Consensus 731 t~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL 810 (1237)
||++.. +|+++.|||...++|++|+.++|..+|+..+
T Consensus 297 TN~P~e-------------------------------------------~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll 333 (428)
T KOG0740|consen 297 TNRPWE-------------------------------------------LDEAARRRFVKRLYIPLPDYETRSLLWKQLL 333 (428)
T ss_pred CCCchH-------------------------------------------HHHHHHHHhhceeeecCCCHHHHHHHHHHHH
Confidence 999974 5777888999999999999999999999988
Q ss_pred hhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHH
Q 000888 811 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGI 890 (1237)
Q Consensus 811 ~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al 890 (1237)
.+. .......++..+. -.+-||++.||.++|.++++.+...+... -.+.. ...+...++...+|+.+.
T Consensus 334 ~~~-~~~l~~~d~~~l~--~~Tegysgsdi~~l~kea~~~p~r~~~~~--~~~~~-------~~~~~~r~i~~~df~~a~ 401 (428)
T KOG0740|consen 334 KEQ-PNGLSDLDISLLA--KVTEGYSGSDITALCKEAAMGPLRELGGT--TDLEF-------IDADKIRPITYPDFKNAF 401 (428)
T ss_pred HhC-CCCccHHHHHHHH--HHhcCcccccHHHHHHHhhcCchhhcccc--hhhhh-------cchhccCCCCcchHHHHH
Confidence 775 2222234444444 45669999999999999888665443332 00100 013345566666666655
Q ss_pred H
Q 000888 891 G 891 (1237)
Q Consensus 891 ~ 891 (1237)
.
T Consensus 402 ~ 402 (428)
T KOG0740|consen 402 K 402 (428)
T ss_pred H
Confidence 5
No 61
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=196.39 Aligned_cols=236 Identities=14% Similarity=0.236 Sum_probs=176.7
Q ss_pred CccccccccccccccchhHHHHHHHHhhhcccCCccc-ccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 000888 420 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 498 (1237)
Q Consensus 420 ~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~ 498 (1237)
-+.-+|+|++.-.+ |..|..|.++.-.+|+++++. +++ + ..++.|||+||+| +.+++||||+|++.++.++.
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l-~~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--I-DPPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--C-CCCceEEEECCCC--CCHHHHHHHHHHhcCCCEEE
Confidence 35678999997766 999999999999999998765 443 3 3567899999999 99999999999998877665
Q ss_pred EeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 000888 499 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 578 (1237)
Q Consensus 499 ~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1237)
+..+.+.
T Consensus 210 i~~s~l~------------------------------------------------------------------------- 216 (398)
T PTZ00454 210 VVGSEFV------------------------------------------------------------------------- 216 (398)
T ss_pred EehHHHH-------------------------------------------------------------------------
Confidence 5422111
Q ss_pred cccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCccccc
Q 000888 579 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 658 (1237)
Q Consensus 579 ~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~ 658 (1237)
T Consensus 217 -------------------------------------------------------------------------------- 216 (398)
T PTZ00454 217 -------------------------------------------------------------------------------- 216 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHHhcC-----CCcE
Q 000888 659 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKV 725 (1237)
Q Consensus 659 ~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~--------~~~~~~lk~~L~~l-----~g~v 725 (1237)
++|+|+ ....++.+|+.+.. .+|.||||||||.++..+ .+....+...|..+ ..+|
T Consensus 217 ------~k~~ge--~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 217 ------QKYLGE--GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred ------HHhcch--hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 112233 34467888888887 899999999999987522 12222333444333 2589
Q ss_pred EEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHH
Q 000888 726 IVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLAS 805 (1237)
Q Consensus 726 vvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~I 805 (1237)
+||++||+++..||+ |.|||| |+.+|+|++|+.++|..|
T Consensus 286 ~VI~aTN~~d~LDpA-------llR~GR----------------------------------fd~~I~~~~P~~~~R~~I 324 (398)
T PTZ00454 286 KVIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPLPDRRQKRLI 324 (398)
T ss_pred EEEEecCCchhCCHH-------HcCCCc----------------------------------ccEEEEeCCcCHHHHHHH
Confidence 999999999988888 677787 889999999999999999
Q ss_pred HHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchh
Q 000888 806 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCES 885 (1237)
Q Consensus 806 wK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed 885 (1237)
|+.++.+ ..+..+++..+.+..+.||+|+||..+|.++.+ .++. .....|+.++
T Consensus 325 l~~~~~~----~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~---------------~A~r-------~~~~~i~~~d 378 (398)
T PTZ00454 325 FQTITSK----MNLSEEVDLEDFVSRPEKISAADIAAICQEAGM---------------QAVR-------KNRYVILPKD 378 (398)
T ss_pred HHHHHhc----CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH---------------HHHH-------cCCCccCHHH
Confidence 9988865 345566777777888899999999888886543 2222 1234788888
Q ss_pred hhhHHHHH
Q 000888 886 IQYGIGIF 893 (1237)
Q Consensus 886 ~~~al~~l 893 (1237)
|..++..+
T Consensus 379 f~~A~~~v 386 (398)
T PTZ00454 379 FEKGYKTV 386 (398)
T ss_pred HHHHHHHH
Confidence 88887744
No 62
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.5e-17 Score=191.17 Aligned_cols=241 Identities=21% Similarity=0.318 Sum_probs=176.4
Q ss_pred HHhcccCCccccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHh
Q 000888 413 ILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYF 492 (1237)
Q Consensus 413 ~~~~i~~~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f 492 (1237)
+...|.+-+.++|+|++.=.- |..|..|-+-+- .||.+. ||++==--.++.|||.|||| ..+.|||||.|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhccc
Confidence 446777888889999994443 999999999876 566653 56653445688999999999 79999999999999
Q ss_pred CCeEEEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 000888 493 GAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDT 572 (1237)
Q Consensus 493 ~a~ll~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1237)
|+++.-- .| . |+ +.
T Consensus 362 ~VPFF~~-----sG-S-----EF-----------------------dE-------------------------------- 375 (752)
T KOG0734|consen 362 GVPFFYA-----SG-S-----EF-----------------------DE-------------------------------- 375 (752)
T ss_pred CCCeEec-----cc-c-----ch-----------------------hh--------------------------------
Confidence 9886321 12 0 11 00
Q ss_pred cccccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCC
Q 000888 573 TLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGG 652 (1237)
Q Consensus 573 ~~~~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~ 652 (1237)
-|||
T Consensus 376 -------------------m~VG--------------------------------------------------------- 379 (752)
T KOG0734|consen 376 -------------------MFVG--------------------------------------------------------- 379 (752)
T ss_pred -------------------hhhc---------------------------------------------------------
Confidence 2333
Q ss_pred CccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--CCcchh---hhHHHHHhcCC-----
Q 000888 653 HGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--GNSDSY---STFKSRLEKLP----- 722 (1237)
Q Consensus 653 ~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~--~~~~~~---~~lk~~L~~l~----- 722 (1237)
+| -+-++.||..++. .-|+||||||||.+=+ .+.+.+ ..|--+|..++
T Consensus 380 ------vG-------------ArRVRdLF~aAk~---~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN 437 (752)
T KOG0734|consen 380 ------VG-------------ARRVRDLFAAAKA---RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN 437 (752)
T ss_pred ------cc-------------HHHHHHHHHHHHh---cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC
Confidence 11 2367899999999 9999999999998443 223332 12333333333
Q ss_pred CcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHH
Q 000888 723 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 802 (1237)
Q Consensus 723 g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~R 802 (1237)
..|+||||||++|+-|+| |.|||| |+++|.|++||..+|
T Consensus 438 eGiIvigATNfpe~LD~A-------L~RPGR----------------------------------FD~~v~Vp~PDv~GR 476 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKA-------LTRPGR----------------------------------FDRHVTVPLPDVRGR 476 (752)
T ss_pred CceEEEeccCChhhhhHH-------hcCCCc----------------------------------cceeEecCCCCcccH
Confidence 489999999999999999 999999 999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 000888 803 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLS 882 (1237)
Q Consensus 803 L~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~ 882 (1237)
.+||+-++.+ +.+..+++....+-.+.|++|+||.. +|..|+-++.. +....++
T Consensus 477 ~eIL~~yl~k----i~~~~~VD~~iiARGT~GFsGAdLaN---------------lVNqAAlkAa~-------dga~~Vt 530 (752)
T KOG0734|consen 477 TEILKLYLSK----IPLDEDVDPKIIARGTPGFSGADLAN---------------LVNQAALKAAV-------DGAEMVT 530 (752)
T ss_pred HHHHHHHHhc----CCcccCCCHhHhccCCCCCchHHHHH---------------HHHHHHHHHHh-------cCccccc
Confidence 9999999865 67777888888888889999999944 34444444433 3455677
Q ss_pred chhhhhHHH
Q 000888 883 CESIQYGIG 891 (1237)
Q Consensus 883 ~ed~~~al~ 891 (1237)
+.+|+.+.+
T Consensus 531 M~~LE~akD 539 (752)
T KOG0734|consen 531 MKHLEFAKD 539 (752)
T ss_pred HHHHhhhhh
Confidence 777776544
No 63
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.9e-16 Score=195.99 Aligned_cols=324 Identities=19% Similarity=0.205 Sum_probs=200.5
Q ss_pred cCCCeEEEEcchhhhhc-C----CcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccC
Q 000888 689 RSCPFILFMKDAEKSIA-G----NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAF 763 (1237)
Q Consensus 689 ~~~p~ILfi~di~~~~~-~----~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al 763 (1237)
..+.+||||||+|-+++ | .+++.++|+++|.+ |.+-+||+||..+|
T Consensus 278 ~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r--g~l~~IGatT~e~Y--------------------------- 328 (898)
T KOG1051|consen 278 GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR--GGLWCIGATTLETY--------------------------- 328 (898)
T ss_pred CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc--CCeEEEecccHHHH---------------------------
Confidence 36899999999998776 3 45899999999965 78999999998775
Q ss_pred CCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccc
Q 000888 764 PDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETL 843 (1237)
Q Consensus 764 ~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~L 843 (1237)
+.+++.+.+|.||| +.+.+..|..+....||.....+ +..+|++.....++ ...+.+...
T Consensus 329 -----------~k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~~----~e~~hg~~~s~~a~----~~a~~~s~~ 388 (898)
T KOG1051|consen 329 -----------RKCIEKDPALERRW-QLVLVPIPSVENLSLILPGLSER----YEVHHGVRISDESL----FSAAQLSAR 388 (898)
T ss_pred -----------HHHHhhCcchhhCc-ceeEeccCcccchhhhhhhhhhh----hccccCCccccccc----ccccchhhh
Confidence 23455688999999 89999999999988888876644 77778777666443 455777778
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCCC--CcccccccchhhhhHHHHHHHHHH-----------------------
Q 000888 844 CIRDQSLTNESAEKIVGWALSHHLMQNPEAD--PDARLVLSCESIQYGIGIFQAIQN----------------------- 898 (1237)
Q Consensus 844 ci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~--~~~~l~l~~ed~~~al~~lq~i~~----------------------- 898 (1237)
++....|+..+++.+-..++...+.....|. ......... ++..+..+++-..
T Consensus 389 ~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~--~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~ 466 (898)
T KOG1051|consen 389 YITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIK--LQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLS 466 (898)
T ss_pred hcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhh--hHHHHHHHHHhhhhhhccccccccccccccccccch
Confidence 8888888777666665555544443322221 000000000 1111111111100
Q ss_pred ----hhhhhhhcc---cccCCHH---------------------------------------HHHHHHhcCcCCCCCCCc
Q 000888 899 ----ESKSLKKSL---KDVVTEN---------------------------------------EFEKRLLADVIPPSDIGV 932 (1237)
Q Consensus 899 ----~~k~~k~~~---k~~v~~~---------------------------------------e~e~~ll~~ii~~~~~~v 932 (1237)
..++....+ +...... ++.. +...++..+....
T Consensus 467 ~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~-~~s~~tgip~~~~ 545 (898)
T KOG1051|consen 467 ASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISE-VVSRWTGIPVDRL 545 (898)
T ss_pred hhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhh-hhhhhcCCchhhh
Confidence 000000000 0000000 0000 0011111000000
Q ss_pred cc--------------hhccccHHHHHHHHHHHhCccCchhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh--
Q 000888 933 TF--------------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA-- 994 (1237)
Q Consensus 933 tf--------------~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~k--P~~gVLL~GPPGTGKT~LAkAIA~eL-- 994 (1237)
+- ..++|+++....+-+.|... +.++.+ |...+||.||.|+|||-||+|+|..+
T Consensus 546 ~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg 617 (898)
T KOG1051|consen 546 AEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG 617 (898)
T ss_pred hhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC
Confidence 00 12344444444444444321 123333 67889999999999999999999998
Q ss_pred -CCcEEEEecccc--ccccccccH-----HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhc
Q 000888 995 -GANFINISMSSI--TSKWFGEGE-----KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1066 (1237)
Q Consensus 995 -g~~fi~Id~seL--~s~~~G~se-----~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ld 1066 (1237)
.-.|++++|+++ +++..|.+. ....++++..++.+.+||+||||| .++..+++.|++.+|
T Consensus 618 se~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIE------------kAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 618 SEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE------------KAHPDVLNILLQLLD 685 (898)
T ss_pred CccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechh------------hcCHHHHHHHHHHHh
Confidence 567999999974 223333333 234578889999999999999998 455778888888888
Q ss_pred CCcccCC-------ccEEEEEecCC
Q 000888 1067 GLRTKDT-------ERILVLAATNR 1084 (1237)
Q Consensus 1067 gl~~~~~-------~~VlVIaTTN~ 1084 (1237)
.....+. .+++||+|+|.
T Consensus 686 ~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 686 RGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred cCccccCCCcEeeccceEEEEeccc
Confidence 7655543 58999999775
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.72 E-value=2.6e-17 Score=194.12 Aligned_cols=236 Identities=19% Similarity=0.260 Sum_probs=174.8
Q ss_pred ccccccccccccccchhHHHHHHHHhhhcccCCccc-ccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 000888 421 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 499 (1237)
Q Consensus 421 ~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~ 499 (1237)
+..+++|+++... |..+..|.+....++++++.. +++ -..++.|||+|||| ..+++||||+|++++++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4557899998777 889999999999999998765 343 23356899999999 899999999999999887776
Q ss_pred eccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000888 500 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 579 (1237)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1237)
+.+.|..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 5433321
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCcccccc
Q 000888 580 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 659 (1237)
Q Consensus 580 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 659 (1237)
+
T Consensus 204 ------------~------------------------------------------------------------------- 204 (389)
T PRK03992 204 ------------K------------------------------------------------------------------- 204 (389)
T ss_pred ------------h-------------------------------------------------------------------
Confidence 1
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHHhcCC-----CcEE
Q 000888 660 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKLP-----DKVI 726 (1237)
Q Consensus 660 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~--------~~~~~~lk~~L~~l~-----g~vv 726 (1237)
|+|+ ....++.+|+.+.. ..|.||||||||.++..+ .+....+...|..+. ++|+
T Consensus 205 -------~~g~--~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 272 (389)
T PRK03992 205 -------FIGE--GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVK 272 (389)
T ss_pred -------hccc--hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEE
Confidence 1222 33467888888887 899999999999987421 222223333333332 5899
Q ss_pred EEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 000888 727 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 806 (1237)
Q Consensus 727 vIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~Iw 806 (1237)
|||+||+.+..|++ |.|||| |++.|+|++|+.++|.+||
T Consensus 273 VI~aTn~~~~ld~a-------llRpgR----------------------------------fd~~I~v~~P~~~~R~~Il 311 (389)
T PRK03992 273 IIAATNRIDILDPA-------ILRPGR----------------------------------FDRIIEVPLPDEEGRLEIL 311 (389)
T ss_pred EEEecCChhhCCHH-------HcCCcc----------------------------------CceEEEECCCCHHHHHHHH
Confidence 99999999877777 667777 8889999999999999999
Q ss_pred HHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhh
Q 000888 807 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESI 886 (1237)
Q Consensus 807 K~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~ 886 (1237)
+.++.. ..+..+++....+..+.||+|+||..+|.++.+ .++.. ....|+.++|
T Consensus 312 ~~~~~~----~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~---------------~a~~~-------~~~~i~~~d~ 365 (389)
T PRK03992 312 KIHTRK----MNLADDVDLEELAELTEGASGADLKAICTEAGM---------------FAIRD-------DRTEVTMEDF 365 (389)
T ss_pred HHHhcc----CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH---------------HHHHc-------CCCCcCHHHH
Confidence 988754 445556777777888899999999988876543 22221 2335788888
Q ss_pred hhHHHHHH
Q 000888 887 QYGIGIFQ 894 (1237)
Q Consensus 887 ~~al~~lq 894 (1237)
..|+..++
T Consensus 366 ~~A~~~~~ 373 (389)
T PRK03992 366 LKAIEKVM 373 (389)
T ss_pred HHHHHHHh
Confidence 88877554
No 65
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.68 E-value=2.8e-16 Score=169.94 Aligned_cols=148 Identities=16% Similarity=0.254 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc------CCcchhhhHHHHHhcCC-----CcEEEEEeeccCCCccccC
Q 000888 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLP-----DKVIVIGSHTHTDNRKEKS 741 (1237)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~------~~~~~~~~lk~~L~~l~-----g~vvvIGst~~~d~~~~~~ 741 (1237)
.-+.|..||+-+.+ ..|+|+||||+|.+.. -+.|....+-..|..++ ..|+-|||||+++-
T Consensus 195 gar~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~----- 266 (368)
T COG1223 195 GARRIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL----- 266 (368)
T ss_pred HHHHHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh-----
Confidence 44589999999999 9999999999998764 12344444444444443 38999999999972
Q ss_pred CCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcC
Q 000888 742 HPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKG 821 (1237)
Q Consensus 742 ~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~ 821 (1237)
.|.++..||+.+|+|.||++|+|+.|+..-.++ +.+..
T Consensus 267 --------------------------------------LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~----~Plpv 304 (368)
T COG1223 267 --------------------------------------LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK----FPLPV 304 (368)
T ss_pred --------------------------------------cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh----CCCcc
Confidence 356778889999999999999999999877654 44444
Q ss_pred CchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHH
Q 000888 822 NLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIG 891 (1237)
Q Consensus 822 Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~ 891 (1237)
+.+.-..+..+.|++|.|| .++++..|+.+++.. .+-.+..++++.++.
T Consensus 305 ~~~~~~~~~~t~g~SgRdi--------------kekvlK~aLh~Ai~e-------d~e~v~~edie~al~ 353 (368)
T COG1223 305 DADLRYLAAKTKGMSGRDI--------------KEKVLKTALHRAIAE-------DREKVEREDIEKALK 353 (368)
T ss_pred ccCHHHHHHHhCCCCchhH--------------HHHHHHHHHHHHHHh-------chhhhhHHHHHHHHH
Confidence 4555556678899999999 456777777776552 344567777777665
No 66
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.4e-15 Score=184.59 Aligned_cols=247 Identities=38% Similarity=0.574 Sum_probs=212.6
Q ss_pred ccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEE
Q 000888 954 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVI 1033 (1237)
Q Consensus 954 pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsIL 1033 (1237)
++..++.+...+ ..++.+++++||||+|||.+++++|.+ +..+..++.++..+++.|..+...+.+|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 455666666655 455689999999999999999999999 776777889999999999999999999999999999999
Q ss_pred EEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHH
Q 000888 1034 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRA 1111 (1237)
Q Consensus 1034 fIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~ 1111 (1237)
++||+|.+.+.+.. ........+..+++..++++. ... +++++.+|.+..+++++++ ||+..+.+..|+...+.
T Consensus 81 ~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccc-cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 99999999988876 555667889999999999987 445 9999999999999999998 99999999999999999
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccH
Q 000888 1112 KILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNM 1191 (1237)
Q Consensus 1112 eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~ 1191 (1237)
+|+...........+.+...++..+.||+++++..+|..+...++++.. ........+++
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------------------~~~~~~~~~~~ 216 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------------------DLVGEYIGVTE 216 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------------------ccCcccccccH
Confidence 9999988877777788999999999999999999999999988887743 00112356999
Q ss_pred HHHHHHHHHhccCccccccchhhhHHHHHHhcCCCCc
Q 000888 1192 DDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 1228 (1237)
Q Consensus 1192 eDF~~AL~~v~pS~s~e~~~~~~lvkW~diyG~~gsr 1228 (1237)
+||.++++++.++ .+.....+.+.|.+++|....+
T Consensus 217 ~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k 251 (494)
T COG0464 217 DDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAK 251 (494)
T ss_pred HHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHH
Confidence 9999999999998 5556677899999999865444
No 67
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.66 E-value=1.8e-16 Score=188.32 Aligned_cols=151 Identities=13% Similarity=0.247 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHHhcC-----CCcEEEEEeeccCCCccc
Q 000888 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKE 739 (1237)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~--------~~~~~~lk~~L~~l-----~g~vvvIGst~~~d~~~~ 739 (1237)
....+..+|+.+.. ..|+||||||||.++..+ .+....+...|..+ .++|.||++||+.+..|+
T Consensus 261 ~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 261 GPKLVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred HHHHHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 34578888988887 899999999999987522 22233344444333 358999999999988777
Q ss_pred cCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhh
Q 000888 740 KSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKM 819 (1237)
Q Consensus 740 ~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l 819 (1237)
+ |.|||| |+++|+|++|+.++|.+||+.++.+ ..+
T Consensus 338 a-------LlRpGR----------------------------------fd~~I~~~~Pd~~~R~~Il~~~~~k----~~l 372 (438)
T PTZ00361 338 A-------LIRPGR----------------------------------IDRKIEFPNPDEKTKRRIFEIHTSK----MTL 372 (438)
T ss_pred H-------hccCCe----------------------------------eEEEEEeCCCCHHHHHHHHHHHHhc----CCC
Confidence 7 667777 8889999999999999999988765 445
Q ss_pred cCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHH
Q 000888 820 KGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIF 893 (1237)
Q Consensus 820 ~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~l 893 (1237)
..+++....+..+.||+|+||..+|.++.+ .++. .....|+.++|..|+..+
T Consensus 373 ~~dvdl~~la~~t~g~sgAdI~~i~~eA~~---------------~Alr-------~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 373 AEDVDLEEFIMAKDELSGADIKAICTEAGL---------------LALR-------ERRMKVTQADFRKAKEKV 424 (438)
T ss_pred CcCcCHHHHHHhcCCCCHHHHHHHHHHHHH---------------HHHH-------hcCCccCHHHHHHHHHHH
Confidence 667777777788899999999888775433 2222 124468888888877754
No 68
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.9e-16 Score=166.28 Aligned_cols=150 Identities=19% Similarity=0.267 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEcchhhhhc----CCcchhhhHH----HHHhcCCC-----cEEEEEeeccCCCcccc
Q 000888 674 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFK----SRLEKLPD-----KVIVIGSHTHTDNRKEK 740 (1237)
Q Consensus 674 k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~----~~~~~~~~lk----~~L~~l~g-----~vvvIGst~~~d~~~~~ 740 (1237)
-+.++.||=.+.+ +-|.|||+||||.+=+ ++..-.+.++ ..|.+|+| ||-||-+||+.|--||+
T Consensus 226 srmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a 302 (404)
T KOG0728|consen 226 SRMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 302 (404)
T ss_pred HHHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHh
Confidence 3589999999999 9999999999998543 2222333344 33455555 99999999999977888
Q ss_pred CCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhc
Q 000888 741 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 820 (1237)
Q Consensus 741 ~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~ 820 (1237)
|-|||| .+++|+|++|++++|++|+++|..+|. +.-.
T Consensus 303 -------llrpgr----------------------------------idrkiefp~p~e~ar~~ilkihsrkmn--l~rg 339 (404)
T KOG0728|consen 303 -------LLRPGR----------------------------------IDRKIEFPPPNEEARLDILKIHSRKMN--LTRG 339 (404)
T ss_pred -------hcCCCc----------------------------------ccccccCCCCCHHHHHHHHHHhhhhhc--hhcc
Confidence 778888 568999999999999999999987632 3333
Q ss_pred CCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHH
Q 000888 821 GNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIF 893 (1237)
Q Consensus 821 ~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~l 893 (1237)
-|+..++ -.-+|-+|++++++|+++-++ |+ .+.+.-++.+||+.+...+
T Consensus 340 i~l~kia--ekm~gasgaevk~vcteagm~-----------al-----------rerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 340 INLRKIA--EKMPGASGAEVKGVCTEAGMY-----------AL-----------RERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred cCHHHHH--HhCCCCccchhhhhhhhhhHH-----------HH-----------HHhhccccHHHHHHHHHHH
Confidence 4444444 456799999999999987662 22 3456778899999887743
No 69
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.65 E-value=5.2e-16 Score=167.80 Aligned_cols=188 Identities=23% Similarity=0.320 Sum_probs=120.5
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~ 1011 (1237)
.+|+|++|+++++..++-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++.+.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 47999999999999988776532111 234468999999999999999999999999999888754321
Q ss_pred cccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcc-----c---------CCccEE
Q 000888 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-----K---------DTERIL 1077 (1237)
Q Consensus 1012 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~-----~---------~~~~Vl 1077 (1237)
..-+..++.... ...|||||||++| +.. ....|+..|+.... . +-.++.
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~-------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKA-------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HH-------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHH-------HHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 122333333332 3579999999988 211 22223333332211 0 114689
Q ss_pred EEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHH
Q 000888 1078 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCV 1149 (1237)
Q Consensus 1078 VIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~ 1149 (1237)
+|++|.+...|...++.||.....+..++.++..+|++......++. ++....+||+++.| +++--.+|++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 99999999999999999999888999999999999999877766665 45567899999998 5544444443
No 70
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.7e-15 Score=174.19 Aligned_cols=220 Identities=17% Similarity=0.302 Sum_probs=167.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~ 1011 (1237)
.+|+.++.-.++|+.+.+-+....+..+.|.+-|.. ..+|.|||||||||||+++.|+|++|++.++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGka-wKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKA-WKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcc-hhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 789999999999999999998888889998876633 34899999999999999999999999999999998765332
Q ss_pred cccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-----h-HHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC
Q 000888 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-----H-EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1237)
Q Consensus 1012 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-----~-~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1237)
.. ++.++..+ ...+||+|.+||.-+.-+..... + ....-.+..||..+||+-...+.--|||.|||.+
T Consensus 275 ---~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ---SD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ---HH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 66665543 34589999999977643322111 1 1123567789999999988776677888999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCC--CcHHHHHHHHH-H--HHHHHHHH
Q 000888 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDG--YSGSDLKNLCV-T--AAHRPIKE 1158 (1237)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~G--ySgaDL~~L~~-~--Aa~~aire 1158 (1237)
+.||||++| |.|..|++..-+.++-+.++..++.-.. +..-+.+|.+..++ .+++|+....- . .+-.+++.
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999985432 22334555554444 58999875432 1 35555565
Q ss_pred HHHH
Q 000888 1159 ILEK 1162 (1237)
Q Consensus 1159 il~~ 1162 (1237)
+.+.
T Consensus 427 Lv~~ 430 (457)
T KOG0743|consen 427 LVEA 430 (457)
T ss_pred HHHH
Confidence 5543
No 71
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.64 E-value=3.2e-16 Score=190.38 Aligned_cols=213 Identities=19% Similarity=0.266 Sum_probs=154.8
Q ss_pred cCCccccccccccccccchhHHHHHHHHhhhcccCCcc-cccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 000888 418 LDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDH-AKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 496 (1237)
Q Consensus 418 ~~~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~-~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~l 496 (1237)
...+..+++|+++.-+ ++.|..|.+.+.. |++++. .+++ ...++.|||+|||| ..+.+||||||++.++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~~~~~g---~~~~~giLL~GppG--tGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSKFTKLG---AKIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHhcC---CCCCCcEEEECCCC--CCHHHHHHHHHHHcCCCe
Confidence 3455778999998877 9999988887664 777653 3443 24457899999999 899999999999998887
Q ss_pred EEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 000888 497 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 576 (1237)
Q Consensus 497 l~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1237)
+.++.+.|..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6655433211
Q ss_pred cccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCccc
Q 000888 577 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 656 (1237)
Q Consensus 577 ~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff 656 (1237)
T Consensus 127 -------------------------------------------------------------------------------- 126 (495)
T TIGR01241 127 -------------------------------------------------------------------------------- 126 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHHhcC-----CC
Q 000888 657 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PD 723 (1237)
Q Consensus 657 ~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~--------~~~~~~lk~~L~~l-----~g 723 (1237)
.|+|+ ....++.+|+.+.. ..|.||||||||.+.... .+....+...|..+ .+
T Consensus 127 ---------~~~g~--~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 127 ---------MFVGV--GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred ---------HHhcc--cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 01111 22356778888877 889999999999987521 11122232333222 34
Q ss_pred cEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHH
Q 000888 724 KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALL 803 (1237)
Q Consensus 724 ~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL 803 (1237)
+|+|||+||+++..||+ |+|||| |+.+|+|++|+.++|.
T Consensus 193 ~v~vI~aTn~~~~ld~a-------l~r~gR----------------------------------fd~~i~i~~Pd~~~R~ 231 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPA-------LLRPGR----------------------------------FDRQVVVDLPDIKGRE 231 (495)
T ss_pred CeEEEEecCChhhcCHH-------HhcCCc----------------------------------ceEEEEcCCCCHHHHH
Confidence 79999999999988888 777888 8889999999999999
Q ss_pred HHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccc
Q 000888 804 ASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 847 (1237)
Q Consensus 804 ~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d 847 (1237)
+||+.++.. .....+++....+..+.|++|+||..+|.++
T Consensus 232 ~il~~~l~~----~~~~~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 232 EILKVHAKN----KKLAPDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred HHHHHHHhc----CCCCcchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999988754 2333455566667788899999998776643
No 72
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.64 E-value=4.7e-16 Score=201.51 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=100.8
Q ss_pred CcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcc--hhhhHHHHHhcC-----CCcEEEEEeeccCCCcccc
Q 000888 668 GTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSD--SYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEK 740 (1237)
Q Consensus 668 ~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~~~--~~~~lk~~L~~l-----~g~vvvIGst~~~d~~~~~ 740 (1237)
+++.....-|+.+|+.|.. ..|+||||||||.+-....+ ..+.|...|+.. ..+|+||||||++|..|||
T Consensus 1712 m~~~e~~~rIr~lFelARk---~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPA 1788 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKA---MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPA 1788 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHH---CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHh
Confidence 4442233459999999999 99999999999996553221 234444455422 3479999999999999999
Q ss_pred CCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhc
Q 000888 741 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 820 (1237)
Q Consensus 741 ~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~ 820 (1237)
|.|||| |+++|+|++|+..+|.+++++++.. +.+.+.
T Consensus 1789 -------LLRPGR----------------------------------FDR~I~Ir~Pd~p~R~kiL~ILl~t--kg~~L~ 1825 (2281)
T CHL00206 1789 -------LIAPNK----------------------------------LNTCIKIRRLLIPQQRKHFFTLSYT--RGFHLE 1825 (2281)
T ss_pred -------HcCCCC----------------------------------CCeEEEeCCCCchhHHHHHHHHHhh--cCCCCC
Confidence 999999 8899999999999999998865421 223333
Q ss_pred CC-chhHHHHhhcCCCCccCcccccccccc
Q 000888 821 GN-LNHLRTVLGRSGLECEGLETLCIRDQS 849 (1237)
Q Consensus 821 ~N-v~~l~~vL~~~glsgaDL~~Lci~d~~ 849 (1237)
.+ ++..+.+-.|.|++||||..+|-+|++
T Consensus 1826 ~~~vdl~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1826 KKMFHTNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred cccccHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33 345556778899999999888776555
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=5.8e-15 Score=186.92 Aligned_cols=185 Identities=24% Similarity=0.381 Sum_probs=139.7
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~Id 1002 (1237)
.++++.|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 566889998888877766542 122589999999999999999999987 67899999
Q ss_pred ccccc--cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEE
Q 000888 1003 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1080 (1237)
Q Consensus 1003 ~seL~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIa 1080 (1237)
+..+. .++.|+.+..++.+|+.+.+..+.||||||||.|++.....+.... +.+.|...+ .++.+.+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~---~~~~L~~~l------~~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD---ASNLLKPAL------SSGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH---HHHHHHHHH------hCCCeEEEE
Confidence 88886 4788999999999999998888999999999999876432221111 112222222 236789999
Q ss_pred ecCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC----CC-CChhhHHHHHHHcCCCcH
Q 000888 1081 ATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DL-SPDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1081 TTN~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~----~l-~~d~dl~~LA~~T~GySg 1141 (1237)
+|+.. ..+|+++.|||. .|.|+.|+.+++.+||+.+.... ++ -.+..+..++..+..|.+
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 99863 468999999995 79999999999999999876542 22 245556777777766654
No 74
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.63 E-value=3.9e-14 Score=163.56 Aligned_cols=199 Identities=21% Similarity=0.226 Sum_probs=138.0
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~ 1011 (1237)
.+|++++|.++.++.|...+..... . ..++.++||+||||+|||++|+++|++++..+..++...+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4799999999999999888753111 1 23457899999999999999999999999988776654331
Q ss_pred cccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH--HhcCCccc-----CCccEEEEEecCC
Q 000888 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRTK-----DTERILVLAATNR 1084 (1237)
Q Consensus 1012 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~--~ldgl~~~-----~~~~VlVIaTTN~ 1084 (1237)
....+..++... ..+.||||||||.+.. ...+.+..+++.... .++..... .-.++.+|++|++
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcch-----HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 122334444432 3468999999998831 112222222222110 01110000 1134788999999
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000888 1085 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1085 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~ 1153 (1237)
+..+++.+++||...+.++.|+.+++.+|++..+...++. ++..+..|++.+.|.. +.+..++..+..
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 9999999999998899999999999999999988876655 4455789999999855 556666655443
No 75
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=1.9e-14 Score=163.90 Aligned_cols=197 Identities=20% Similarity=0.231 Sum_probs=134.5
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1012 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G 1012 (1237)
+|++++|++++++.|...+..... ...++.+++|+||||+|||+||+++|++++.++..+....+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~---------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~---- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM---------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK---- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC----
Confidence 689999999999999988753111 1233468999999999999999999999998877665443211
Q ss_pred ccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHH--hcCCcc-----cCCccEEEEEecCCC
Q 000888 1013 EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRT-----KDTERILVLAATNRP 1085 (1237)
Q Consensus 1013 ~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~--ldgl~~-----~~~~~VlVIaTTN~p 1085 (1237)
...+...+... ..+.|||||||+.+.. ...+.+..+++..-.. ++.... ....++.+|++|+.+
T Consensus 69 --~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 69 --PGDLAAILTNL--EEGDVLFIDEIHRLSP-----AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred --chhHHHHHHhc--ccCCEEEEehHhhhCH-----HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 11222222222 2468999999998832 1122222222221110 000000 011347889999999
Q ss_pred CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1086 FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1086 ~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
..+++++++||...+.+..|+.+++.++++..+...++. ++..++.|++.+.|+. +.+.+++..+.
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 999999999998889999999999999999988766554 4455788999999866 45566766554
No 76
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.1e-14 Score=166.66 Aligned_cols=179 Identities=27% Similarity=0.459 Sum_probs=131.5
Q ss_pred ccchhccccHHHH---HHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 932 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 932 vtf~dI~Gle~vK---~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.++++++|++.+. .-|++++.. ....+++||||||||||+||+.||...+.+|..++...
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 4789999998887 345555542 22368999999999999999999999999999998643
Q ss_pred ccccccHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchhHHHHHHHHH-HHHHhcCCcccCCccEEEEEec-
Q 000888 1009 KWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNE-FMVNWDGLRTKDTERILVLAAT- 1082 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~~a~~~il~e-LL~~ldgl~~~~~~~VlVIaTT- 1082 (1237)
..-+-++.+++.|++.. ..|||||||+++ + +..|. ||-.+ +++.+++|++|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----n--------K~QQD~lLp~v------E~G~iilIGATT 140 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----N--------KAQQDALLPHV------ENGTIILIGATT 140 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----C--------hhhhhhhhhhh------cCCeEEEEeccC
Confidence 34567899999996543 479999999988 2 22222 33222 34677888766
Q ss_pred -CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh--CCCC------ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1083 -NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK--EDLS------PDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1083 -N~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~--~~l~------~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
|..+.|.+++++|. +++.+...+.++..++++..+.. .++. ++..++.|+..++|-..+.| ++++.|+
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~ 217 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAA 217 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHH
Confidence 45579999999999 78999999999999999984432 3333 34457788999988665555 3444444
No 77
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.8e-16 Score=165.49 Aligned_cols=215 Identities=16% Similarity=0.270 Sum_probs=163.9
Q ss_pred CccccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 000888 420 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 499 (1237)
Q Consensus 420 ~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~ 499 (1237)
-+.-+||+.+.... +-.|+...+|+-.+|.|.++-+..- -..++.+||+|||| +.+.|||||.||+--|.++-+
T Consensus 147 ~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qig--idpprgvllygppg--~gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 147 DEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQIG--IDPPRGVLLYGPPG--TGKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred CCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHhC--CCCCcceEEeCCCC--CcHHHHHHHHhhccchheeee
Confidence 34556777775444 8889999999999999999875542 23467899999999 999999999999999887755
Q ss_pred eccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 000888 500 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 579 (1237)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1237)
-.+.|.-
T Consensus 221 vgsefvq------------------------------------------------------------------------- 227 (408)
T KOG0727|consen 221 VGSEFVQ------------------------------------------------------------------------- 227 (408)
T ss_pred ccHHHHH-------------------------------------------------------------------------
Confidence 4322210
Q ss_pred ccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCcccccc
Q 000888 580 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 659 (1237)
Q Consensus 580 s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~ 659 (1237)
||.|.
T Consensus 228 ------------kylge--------------------------------------------------------------- 232 (408)
T KOG0727|consen 228 ------------KYLGE--------------------------------------------------------------- 232 (408)
T ss_pred ------------HHhcc---------------------------------------------------------------
Confidence 45551
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcC----Cc----chhhhHHHHHhcCCC-----cEE
Q 000888 660 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NS----DSYSTFKSRLEKLPD-----KVI 726 (1237)
Q Consensus 660 ~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~----~~----~~~~~lk~~L~~l~g-----~vv 726 (1237)
.-+.++-+|..+.+ +.|.|||||||+.+... +. +.-..|-..|.+.+| ||-
T Consensus 233 -------------gprmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvk 296 (408)
T KOG0727|consen 233 -------------GPRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVK 296 (408)
T ss_pred -------------CcHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceE
Confidence 22478889999999 99999999999998862 22 223344444555554 999
Q ss_pred EEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHH
Q 000888 727 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 806 (1237)
Q Consensus 727 vIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~Iw 806 (1237)
||-+||+.|..||+ |-|||| ++++|+|++||..++.-+|
T Consensus 297 vimatnradtldpa-------llrpgr----------------------------------ldrkiefplpdrrqkrlvf 335 (408)
T KOG0727|consen 297 VIMATNRADTLDPA-------LLRPGR----------------------------------LDRKIEFPLPDRRQKRLVF 335 (408)
T ss_pred EEEecCcccccCHh-------hcCCcc----------------------------------ccccccCCCCchhhhhhhH
Confidence 99999999999999 889999 5679999999999998899
Q ss_pred HHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccc
Q 000888 807 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 849 (1237)
Q Consensus 807 K~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ 849 (1237)
...+.+ ..+.+.++....+..---++|+|+.++|-++-+
T Consensus 336 ~titsk----m~ls~~vdle~~v~rpdkis~adi~aicqeagm 374 (408)
T KOG0727|consen 336 STITSK----MNLSDEVDLEDLVARPDKISGADINAICQEAGM 374 (408)
T ss_pred Hhhhhc----ccCCcccCHHHHhcCccccchhhHHHHHHHHhH
Confidence 877765 456666777666767677888888888776543
No 78
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.61 E-value=5.5e-15 Score=178.09 Aligned_cols=133 Identities=21% Similarity=0.263 Sum_probs=94.5
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhhc-cCCCeEEEEcchhhhhcC-----CcchhhhHHHHH----hcCC--CcEEEEE
Q 000888 662 LRLENSGTEDLDKLLINTLFEVVFSES-RSCPFILFMKDAEKSIAG-----NSDSYSTFKSRL----EKLP--DKVIVIG 729 (1237)
Q Consensus 662 ~~l~~~~~e~~~k~~i~~L~ev~~~~~-~~~p~ILfi~di~~~~~~-----~~~~~~~lk~~L----~~l~--g~vvvIG 729 (1237)
..+++|+|| .+..++.+|+.+.+.+ ...|+||||||+|.++.. +.+....+.+.| +.+. ++|+|||
T Consensus 261 eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ 338 (512)
T TIGR03689 261 ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIG 338 (512)
T ss_pred hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEe
Confidence 345678888 7778999999887643 357999999999998852 222222333333 3222 6899999
Q ss_pred eeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHh
Q 000888 730 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 809 (1237)
Q Consensus 730 st~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~q 809 (1237)
+||+++.+||+ |.|||| |+.+|+|++|+.++|.+||+.+
T Consensus 339 ATN~~d~LDpA-------LlRpGR----------------------------------fD~~I~~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 339 ASNREDMIDPA-------ILRPGR----------------------------------LDVKIRIERPDAEAAADIFSKY 377 (512)
T ss_pred ccCChhhCCHh-------hcCccc----------------------------------cceEEEeCCCCHHHHHHHHHHH
Confidence 99999988888 788888 8899999999999999999988
Q ss_pred hhhhhhhhhhcCCchhHHHHhhcCCCCccCccccccc
Q 000888 810 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 846 (1237)
Q Consensus 810 L~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~ 846 (1237)
+.... .+. ..+....|+.++++..+|.+
T Consensus 378 l~~~l---~l~------~~l~~~~g~~~a~~~al~~~ 405 (512)
T TIGR03689 378 LTDSL---PLD------ADLAEFDGDREATAAALIQR 405 (512)
T ss_pred hhccC---Cch------HHHHHhcCCCHHHHHHHHHH
Confidence 75421 111 11223456777777666544
No 79
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.3e-15 Score=186.96 Aligned_cols=237 Identities=20% Similarity=0.327 Sum_probs=177.8
Q ss_pred ccCCccccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 000888 417 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 496 (1237)
Q Consensus 417 i~~~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~l 496 (1237)
+-+-.++.|+|++|=-- |..|..|.+-+- .||+++. |.+-=.-.++.+||+|||| +.++.||||.|-+-|+++
T Consensus 300 ~~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF 372 (774)
T KOG0731|consen 300 FKNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPF 372 (774)
T ss_pred eccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCce
Confidence 33467888999997655 999999999876 6888763 3332234678999999999 899999999999999999
Q ss_pred EEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 000888 497 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 576 (1237)
Q Consensus 497 l~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1237)
+-+-.+.|.-
T Consensus 373 ~svSGSEFvE---------------------------------------------------------------------- 382 (774)
T KOG0731|consen 373 FSVSGSEFVE---------------------------------------------------------------------- 382 (774)
T ss_pred eeechHHHHH----------------------------------------------------------------------
Confidence 8665433321
Q ss_pred cccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCccc
Q 000888 577 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 656 (1237)
Q Consensus 577 ~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff 656 (1237)
.|+|.
T Consensus 383 ---------------~~~g~------------------------------------------------------------ 387 (774)
T KOG0731|consen 383 ---------------MFVGV------------------------------------------------------------ 387 (774)
T ss_pred ---------------Hhccc------------------------------------------------------------
Confidence 01110
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---------CCcchhhhHHHHHhcCC-----
Q 000888 657 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---------GNSDSYSTFKSRLEKLP----- 722 (1237)
Q Consensus 657 ~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~---------~~~~~~~~lk~~L~~l~----- 722 (1237)
| ---++.||..+.. .-|+|||||||+.+-. ++.+.-..|--.|-.++
T Consensus 388 ---~-------------asrvr~lf~~ar~---~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 388 ---G-------------ASRVRDLFPLARK---NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ---c-------------hHHHHHHHHHhhc---cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 0 0167889999999 9999999999997543 34444445544453333
Q ss_pred CcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHH
Q 000888 723 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 802 (1237)
Q Consensus 723 g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~R 802 (1237)
+.||||++||++|-.|++ |.|||| |+++|.|.+|+..+|
T Consensus 449 ~~vi~~a~tnr~d~ld~a-------llrpGR----------------------------------fdr~i~i~~p~~~~r 487 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPA-------LLRPGR----------------------------------FDRQIQIDLPDVKGR 487 (774)
T ss_pred CcEEEEeccCCccccCHH-------hcCCCc----------------------------------cccceeccCCchhhh
Confidence 489999999999988888 888988 889999999999999
Q ss_pred HHHHHHhhhhhhhhhhh-cCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccc
Q 000888 803 LASWKHQLDRDSETLKM-KGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVL 881 (1237)
Q Consensus 803 L~IwK~qL~~~~e~l~l-~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l 881 (1237)
.+|++.|+.+ +.+ .+.+++...+..+.|+.|+||.-+|-+++++ |+ .+....|
T Consensus 488 ~~i~~~h~~~----~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~-----------a~-----------r~~~~~i 541 (774)
T KOG0731|consen 488 ASILKVHLRK----KKLDDEDVDLSKLASLTPGFSGADLANLCNEAALL-----------AA-----------RKGLREI 541 (774)
T ss_pred HHHHHHHhhc----cCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHH-----------HH-----------HhccCcc
Confidence 9999999866 444 4677777778889999999998888765441 11 2234456
Q ss_pred cchhhhhHHH
Q 000888 882 SCESIQYGIG 891 (1237)
Q Consensus 882 ~~ed~~~al~ 891 (1237)
...+|++++.
T Consensus 542 ~~~~~~~a~~ 551 (774)
T KOG0731|consen 542 GTKDLEYAIE 551 (774)
T ss_pred chhhHHHHHH
Confidence 7777777776
No 80
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.58 E-value=8.3e-14 Score=159.64 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=78.6
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhc--cCCCeEEEEcchhhhhcCCc----chhh-hHHHHH----hc-------------
Q 000888 665 ENSGTEDLDKLLINTLFEVVFSES--RSCPFILFMKDAEKSIAGNS----DSYS-TFKSRL----EK------------- 720 (1237)
Q Consensus 665 ~~~~~e~~~k~~i~~L~ev~~~~~--~~~p~ILfi~di~~~~~~~~----~~~~-~lk~~L----~~------------- 720 (1237)
++|+|| .++.|+.+|+.+...+ +..|+||||||||.++++.. ..-+ .+...| +.
T Consensus 186 sk~vGE--sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 186 SENAGE--PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred cCcCCc--HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 357777 8899999999998764 67899999999999886321 1111 221222 21
Q ss_pred -CCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCH
Q 000888 721 -LPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQD 799 (1237)
Q Consensus 721 -l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPde 799 (1237)
-..+|+||++||+++..|++ |+|||| |++. |.+|+.
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpA-------LlRpGR----------------------------------fDk~--i~lPd~ 300 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAP-------LIRDGR----------------------------------MEKF--YWAPTR 300 (413)
T ss_pred ccCCCceEEEeCCCcccCCHh-------HcCCCC----------------------------------CCce--eCCCCH
Confidence 14579999999999999999 999999 6554 458999
Q ss_pred HHHHHHHHHhhhh
Q 000888 800 EALLASWKHQLDR 812 (1237)
Q Consensus 800 E~RL~IwK~qL~~ 812 (1237)
++|.+||+.++.+
T Consensus 301 e~R~eIL~~~~r~ 313 (413)
T PLN00020 301 EDRIGVVHGIFRD 313 (413)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988865
No 81
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.58 E-value=2.4e-14 Score=182.33 Aligned_cols=205 Identities=18% Similarity=0.282 Sum_probs=140.6
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1007 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~-------- 1007 (1237)
++.|++++++.+.+++..+... ... ....+||+||||||||++|++||+.++.+|+++++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~--~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKM--KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCC--CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 5789999999999877643211 111 123799999999999999999999999999999875432
Q ss_pred -cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcC-----Cc------ccCCcc
Q 000888 1008 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-----LR------TKDTER 1075 (1237)
Q Consensus 1008 -s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldg-----l~------~~~~~~ 1075 (1237)
..|.|.....+.+.|..+....| ||||||||.+...... . ..+.|+..++. +. .-+..+
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-D-------PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-C-------HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 35677777788888888876565 8999999999743211 1 12233333331 00 012257
Q ss_pred EEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh-----hCCCC------ChhhHHHHHH-HcCCCcHHH
Q 000888 1076 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA-----KEDLS------PDVDFDAIAN-MTDGYSGSD 1143 (1237)
Q Consensus 1076 VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~-----~~~l~------~d~dl~~LA~-~T~GySgaD 1143 (1237)
+++|+|||..+.+++++++|| .+|.|+.|+.+++.+|++.++. ..++. ++..+..|++ .+..+..++
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred EEEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 899999999999999999999 5789999999999999988762 22222 2233444444 333444556
Q ss_pred HHHHHHHHHHHHHHH
Q 000888 1144 LKNLCVTAAHRPIKE 1158 (1237)
Q Consensus 1144 L~~L~~~Aa~~aire 1158 (1237)
|+..+......+.++
T Consensus 543 l~r~i~~~~~~~~~~ 557 (775)
T TIGR00763 543 LERQIEKICRKAAVK 557 (775)
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555544444333
No 82
>CHL00176 ftsH cell division protein; Validated
Probab=99.56 E-value=5.9e-15 Score=182.76 Aligned_cols=213 Identities=20% Similarity=0.293 Sum_probs=154.1
Q ss_pred ccCCccccccccccccccchhHHHHHHHHhhhcccCCccc-ccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 000888 417 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 495 (1237)
Q Consensus 417 i~~~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~-~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ 495 (1237)
+....+..++|+++.-+ +..|..|.+.+.. |++++.. +++ ...++.|||+|||| ..+++||||||++.+++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~~-lk~~~~~~~~g---~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p 243 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVSF-LKKPERFTAVG---AKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVP 243 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHHH-HhCHHHHhhcc---CCCCceEEEECCCC--CCHHHHHHHHHHHhCCC
Confidence 34566778999998877 8888888887654 7776542 333 34567899999999 89999999999999988
Q ss_pred EEEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 000888 496 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 575 (1237)
Q Consensus 496 ll~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1237)
++.++.+.|..
T Consensus 244 ~i~is~s~f~~--------------------------------------------------------------------- 254 (638)
T CHL00176 244 FFSISGSEFVE--------------------------------------------------------------------- 254 (638)
T ss_pred eeeccHHHHHH---------------------------------------------------------------------
Confidence 77665433321
Q ss_pred ccccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCcc
Q 000888 576 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 655 (1237)
Q Consensus 576 ~~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~f 655 (1237)
.|+|
T Consensus 255 ----------------~~~g------------------------------------------------------------ 258 (638)
T CHL00176 255 ----------------MFVG------------------------------------------------------------ 258 (638)
T ss_pred ----------------Hhhh------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--------CCcchhhhHHHHHhcC-----C
Q 000888 656 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKL-----P 722 (1237)
Q Consensus 656 f~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~--------~~~~~~~~lk~~L~~l-----~ 722 (1237)
. ....++.+|+.+.. ..|+||||||||.+.. ++.+.-..|...|..+ .
T Consensus 259 --------------~--~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 259 --------------V--GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred --------------h--hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 0 11145667777766 8999999999999763 1223333344444333 2
Q ss_pred CcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHH
Q 000888 723 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 802 (1237)
Q Consensus 723 g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~R 802 (1237)
.+|+|||+||+++..|++ |.|||| |+++|.|.+|+.++|
T Consensus 320 ~~ViVIaaTN~~~~LD~A-------LlRpGR----------------------------------Fd~~I~v~lPd~~~R 358 (638)
T CHL00176 320 KGVIVIAATNRVDILDAA-------LLRPGR----------------------------------FDRQITVSLPDREGR 358 (638)
T ss_pred CCeeEEEecCchHhhhhh-------hhcccc----------------------------------CceEEEECCCCHHHH
Confidence 479999999999887787 777888 889999999999999
Q ss_pred HHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCccccccc
Q 000888 803 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 846 (1237)
Q Consensus 803 L~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~ 846 (1237)
.+||+.++.. ..+..+++....+-.+.|++|+||..+|.+
T Consensus 359 ~~IL~~~l~~----~~~~~d~~l~~lA~~t~G~sgaDL~~lvne 398 (638)
T CHL00176 359 LDILKVHARN----KKLSPDVSLELIARRTPGFSGADLANLLNE 398 (638)
T ss_pred HHHHHHHHhh----cccchhHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 9999998865 233445555666677889999999777554
No 83
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=9.1e-16 Score=167.84 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=148.5
Q ss_pred eeeccCCCCCCCCC-C----CCCCCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc-
Q 000888 632 GVRFDKPIPDGVDL-G----GQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA- 705 (1237)
Q Consensus 632 gV~Fd~~~~~~~~l-~----~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~- 705 (1237)
||+.-++||||+|| | |+.| .+|.--+|..-..|+.|| .-++++.||.|+.+ +.|.|+||||||.+=.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTS--ATFlRvvGseLiQkylGd--GpklvRqlF~vA~e---~apSIvFiDEIdAiGtK 293 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTS--ATFLRVVGSELIQKYLGD--GPKLVRELFRVAEE---HAPSIVFIDEIDAIGTK 293 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccc--hhhhhhhhHHHHHHHhcc--chHHHHHHHHHHHh---cCCceEEeehhhhhccc
Confidence 88889999999993 3 4333 366666788889999999 89999999999999 9999999999998543
Q ss_pred -------CCcchhhhHHHHHhcC-----CCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCcccccccc
Q 000888 706 -------GNSDSYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDR 773 (1237)
Q Consensus 706 -------~~~~~~~~lk~~L~~l-----~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~ 773 (1237)
|..++-...-..|.+| +|.|-||-|||+.++-||+ |-||||
T Consensus 294 Ryds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPa-------LiRPGr-------------------- 346 (440)
T KOG0726|consen 294 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA-------LIRPGR-------------------- 346 (440)
T ss_pred cccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHh-------hcCCCc--------------------
Confidence 2233333333344444 5699999999999999999 899999
Q ss_pred CCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchH
Q 000888 774 GKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNE 853 (1237)
Q Consensus 774 ~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~ 853 (1237)
.+++|+|++||+..+..||.+|+.+ ..+..++++...+.....++|+|++++|+++-++
T Consensus 347 --------------IDrKIef~~pDe~TkkkIf~IHTs~----Mtl~~dVnle~li~~kddlSGAdIkAictEaGll--- 405 (440)
T KOG0726|consen 347 --------------IDRKIEFPLPDEKTKKKIFQIHTSR----MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLL--- 405 (440)
T ss_pred --------------cccccccCCCchhhhceeEEEeecc----cchhccccHHHHhhcccccccccHHHHHHHHhHH---
Confidence 5589999999999999999999987 5577788888777788899999999999987552
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHH
Q 000888 854 SAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIG 891 (1237)
Q Consensus 854 ~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~ 891 (1237)
|+ +..++.++.+||..+..
T Consensus 406 --------Al-----------RerRm~vt~~DF~ka~e 424 (440)
T KOG0726|consen 406 --------AL-----------RERRMKVTMEDFKKAKE 424 (440)
T ss_pred --------HH-----------HHHHhhccHHHHHHHHH
Confidence 11 23466678888887665
No 84
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.55 E-value=1.2e-14 Score=170.24 Aligned_cols=234 Identities=19% Similarity=0.271 Sum_probs=163.6
Q ss_pred ccccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 000888 421 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 500 (1237)
Q Consensus 421 ~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d 500 (1237)
+.-+++|++.... +..+..|.++...+++++++.+... + ..++.|||+||+| ..+++||||+|++.++.++-+.
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g-~-~~p~gvLL~GppG--tGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEVG-I-EPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcC-C-CCCceEEEECCCC--CCHHHHHHHHHHhCCCCEEecc
Confidence 3456788886554 8899999999999999987653221 2 2456799999999 8999999999999988765443
Q ss_pred ccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 000888 501 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 580 (1237)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 580 (1237)
...+.
T Consensus 189 ~~~l~--------------------------------------------------------------------------- 193 (364)
T TIGR01242 189 GSELV--------------------------------------------------------------------------- 193 (364)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 21110
Q ss_pred cccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCccccccc
Q 000888 581 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 660 (1237)
Q Consensus 581 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 660 (1237)
T Consensus 194 -------------------------------------------------------------------------------- 193 (364)
T TIGR01242 194 -------------------------------------------------------------------------------- 193 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC--------cchhhhHHHHH---hcC--CCcEEE
Q 000888 661 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRL---EKL--PDKVIV 727 (1237)
Q Consensus 661 ~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~--------~~~~~~lk~~L---~~l--~g~vvv 727 (1237)
.+|.|+ ....+..+|+.+.. ..|.||||||+|.+...+ .+.-..+-..| +.+ .++|+|
T Consensus 194 ----~~~~g~--~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 194 ----RKYIGE--GARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred ----HHhhhH--HHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 011122 33466778887776 899999999999986521 11112222223 222 368999
Q ss_pred EEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHH
Q 000888 728 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 807 (1237)
Q Consensus 728 IGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK 807 (1237)
|+++|+.+..|++ |.|||| |++.|+|++|+.++|.+||+
T Consensus 265 I~ttn~~~~ld~a-------l~r~gr----------------------------------fd~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 265 IAATNRPDILDPA-------LLRPGR----------------------------------FDRIIEVPLPDFEGRLEILK 303 (364)
T ss_pred EEecCChhhCChh-------hcCccc----------------------------------CceEEEeCCcCHHHHHHHHH
Confidence 9999999877777 666777 88899999999999999999
Q ss_pred HhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHHHHHHHHHHHhhhhcCCCCCCcccccccchhhh
Q 000888 808 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQ 887 (1237)
Q Consensus 808 ~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~ 887 (1237)
.++.+ ..+..+++....+..+.|++|+||..+|.++.+ .++.. ....|+.++|.
T Consensus 304 ~~~~~----~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~---------------~a~~~-------~~~~i~~~d~~ 357 (364)
T TIGR01242 304 IHTRK----MKLAEDVDLEAIAKMTEGASGADLKAICTEAGM---------------FAIRE-------ERDYVTMDDFI 357 (364)
T ss_pred HHHhc----CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHH---------------HHHHh-------CCCccCHHHHH
Confidence 88754 344455666666777889999999887775433 22221 23457778888
Q ss_pred hHHH
Q 000888 888 YGIG 891 (1237)
Q Consensus 888 ~al~ 891 (1237)
.++.
T Consensus 358 ~a~~ 361 (364)
T TIGR01242 358 KAVE 361 (364)
T ss_pred HHHH
Confidence 7765
No 85
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=168.62 Aligned_cols=184 Identities=20% Similarity=0.262 Sum_probs=136.5
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--------------- 996 (1237)
.+|+|++|++.+++.|+..+.. .+....+||+||+|+|||++|+.+|+.+.+
T Consensus 13 qtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 5899999999999999998863 233356899999999999999999999976
Q ss_pred --------------cEEEEeccccccccccccHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHH
Q 000888 997 --------------NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMK 1058 (1237)
Q Consensus 997 --------------~fi~Id~seL~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~a~~~il 1058 (1237)
.++.++... ...-..++.+.+.+. .....|+||||+|.|- ....
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~Aa 141 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAF 141 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHH
Confidence 223333221 112234555554443 2345799999999882 2455
Q ss_pred HHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCC-hhhHHHHHHHcC
Q 000888 1059 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTD 1137 (1237)
Q Consensus 1059 ~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~-d~dl~~LA~~T~ 1137 (1237)
|.||..|+. ...++++|.+|+.+..|.+.|++|| ..+.|..++.++..+.++.++..+++.. +..+..|++.++
T Consensus 142 NALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 677776665 3467888888999999999999999 7899999999999999999988777663 344678899988
Q ss_pred CCcHHHHHHHHHHHH
Q 000888 1138 GYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1138 GySgaDL~~L~~~Aa 1152 (1237)
| +.++..+++..+.
T Consensus 217 G-s~RdALsLLdQai 230 (700)
T PRK12323 217 G-SMRDALSLTDQAI 230 (700)
T ss_pred C-CHHHHHHHHHHHH
Confidence 8 5556566665543
No 86
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.4e-13 Score=151.64 Aligned_cols=188 Identities=23% Similarity=0.307 Sum_probs=137.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1011 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~ 1011 (1237)
..|+|++|++++|++|+-++.....+ ....-++|||||||.|||+||.-||+++|.++...+.+.+..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 57999999999999999888653322 334569999999999999999999999999998887766521
Q ss_pred cccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHh-cCCccc------CCccEEEEEecCC
Q 000888 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW-DGLRTK------DTERILVLAATNR 1084 (1237)
Q Consensus 1012 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~l-dgl~~~------~~~~VlVIaTTN~ 1084 (1237)
..-+..++.... ...|||||||+++. +...+.+.-++..|-..+ -|-... +-.++.+|++|.+
T Consensus 91 ---~gDlaaiLt~Le--~~DVLFIDEIHrl~-----~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 91 ---PGDLAAILTNLE--EGDVLFIDEIHRLS-----PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred ---hhhHHHHHhcCC--cCCeEEEehhhhcC-----hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 223333433322 34799999999883 222333333333332111 010000 1257899999999
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1085 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1085 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
...|...++.||....++..++.++..+|+.......++. ++....+||+++.|-..
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 9999999999999999999999999999999988777666 44567889999998554
No 87
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.5e-13 Score=163.80 Aligned_cols=183 Identities=18% Similarity=0.237 Sum_probs=134.9
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|+|++|++.+.+.|+..+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 5899999999999999988763 2223469999999999999999999998652
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 998 ----------fi~Id~seL~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
|+.++... ...-..++.+.+.+. .....|+||||+|.|- ...++.||.
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLK 143 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLK 143 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHH
Confidence 33333211 011233444444333 2345799999999882 345666777
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.++. ...++++|.+|+.++.|.+.+++|+ ..+.|..++.++..++++.++..+++. ++..+..||+.++|. .+
T Consensus 144 tLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~R 217 (484)
T PRK14956 144 TLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-VR 217 (484)
T ss_pred Hhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-HH
Confidence 6654 3467888888888999999999999 678999999999999999999887765 556688899999984 44
Q ss_pred HHHHHHHHH
Q 000888 1143 DLKNLCVTA 1151 (1237)
Q Consensus 1143 DL~~L~~~A 1151 (1237)
+..++++.+
T Consensus 218 dAL~lLeq~ 226 (484)
T PRK14956 218 DMLSFMEQA 226 (484)
T ss_pred HHHHHHHHH
Confidence 555555443
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.8e-13 Score=168.30 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=136.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|++++|++.+++.|+..+.. .+....+||+||+|+|||++|+++|+.+++.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 5899999999999999988753 2333568999999999999999999998642
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 998 ----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
++.++... ...-..++.+++.+.. ....||||||+|.|. ....|.||.
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLK 141 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLK 141 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHH
Confidence 33333221 1122345555555432 235799999999882 234566666
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.|+.- ..++.+|.+||.+..|.+.|++|| ..|.|..++.++..++|+.++..+++. ++..+..|++.++|.. +
T Consensus 142 tLEEP----P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm-R 215 (830)
T PRK07003 142 TLEEP----PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM-R 215 (830)
T ss_pred HHHhc----CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-H
Confidence 66543 357888889999999999999999 789999999999999999999888765 5566888999999854 4
Q ss_pred HHHHHHHHHH
Q 000888 1143 DLKNLCVTAA 1152 (1237)
Q Consensus 1143 DL~~L~~~Aa 1152 (1237)
+..+++..+.
T Consensus 216 dALsLLdQAi 225 (830)
T PRK07003 216 DALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 89
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.6e-14 Score=164.84 Aligned_cols=109 Identities=23% Similarity=0.339 Sum_probs=99.1
Q ss_pred cCCCcchhhcccCCCCcceeeeCCeeEEcCCCCcceeecCCCCccceEEEEEE-----------ecCCceEEEEEEeCCC
Q 000888 122 ETSTPWCRLLSQSGQNSNVPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHV-----------QSEGSAVAMVESIGSK 190 (1237)
Q Consensus 122 ~~~~pWgrL~s~~~~~~~l~i~~~~~tvGr~~~Cd~~l~~~~~s~~~c~i~~~-----------~~~~~~~~~led~s~n 190 (1237)
....||+||+......+++++.+++||+||+.+||+.+....+|.+|+++... +.+++.++||+|+|+|
T Consensus 41 ~~~~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~n 120 (475)
T KOG0615|consen 41 ATVKPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRN 120 (475)
T ss_pred ccccchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccC
Confidence 34567999999999999999999999999999999999999999998887653 2346669999999999
Q ss_pred ceEEcCeeecCCCeeEccCCCEEEEeecCCeeEEEEecch
Q 000888 191 GLQVNGKNLKKNTSCELRSGDEVVFGSLGNHAYIFQQLLN 230 (1237)
Q Consensus 191 Gt~VNg~~~~k~~~~~L~~gDeI~f~~~~~~ayiF~~l~~ 230 (1237)
|||||.+.+|||.+.+|+|||||.++.+..++|+|.+++.
T Consensus 121 GT~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~ 160 (475)
T KOG0615|consen 121 GTFVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSR 160 (475)
T ss_pred cccccHhHhhccccccccCCCEEEeccchhheeeeecccc
Confidence 9999999999999999999999999999999999999743
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=1.9e-13 Score=172.14 Aligned_cols=196 Identities=18% Similarity=0.287 Sum_probs=139.8
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 000888 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISM 1003 (1237)
Q Consensus 934 f~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~Id~ 1003 (1237)
++.+.|-++....+.+.+.. +...++||+||||||||++|+++|+.. +..++.++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 44677877777777766542 112578999999999999999999875 455666666
Q ss_pred cccc--cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEe
Q 000888 1004 SSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 1081 (1237)
Q Consensus 1004 seL~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaT 1081 (1237)
..+. ..|.|+.+..++.+|..+.+..++||||||||.|++.+...+.+.....++..++ .++.+.+|++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEec
Confidence 6554 4678888999999999998888999999999999877643222222222333222 2467999999
Q ss_pred cCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-----ChhhHHHHHHHcC-----CCcHHHHHH
Q 000888 1082 TNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-----PDVDFDAIANMTD-----GYSGSDLKN 1146 (1237)
Q Consensus 1082 TN~p~-----~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-----~d~dl~~LA~~T~-----GySgaDL~~ 1146 (1237)
|+.++ .+|+++.|||. .|.|+.|+.+++.+||+.+..+.... .+..+..++..+. -+-+.....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred CChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 98753 68999999995 79999999999999999876543322 2333444444333 344556677
Q ss_pred HHHHHHH
Q 000888 1147 LCVTAAH 1153 (1237)
Q Consensus 1147 L~~~Aa~ 1153 (1237)
++++|+.
T Consensus 401 lldea~a 407 (758)
T PRK11034 401 VIDEAGA 407 (758)
T ss_pred HHHHHHH
Confidence 7887764
No 91
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.50 E-value=3.7e-14 Score=176.97 Aligned_cols=125 Identities=17% Similarity=0.308 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcC--------CcchhhhHHHHH---hcC--CCcEEEEEeeccCCCccccCC
Q 000888 676 LINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDSYSTFKSRL---EKL--PDKVIVIGSHTHTDNRKEKSH 742 (1237)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~--------~~~~~~~lk~~L---~~l--~g~vvvIGst~~~d~~~~~~~ 742 (1237)
.++.+|+.+.. ..|+||||||||.+... +.+.-..+...| +.. ...|+|||+||+++..|++
T Consensus 232 ~~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A-- 306 (644)
T PRK10733 232 RVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA-- 306 (644)
T ss_pred HHHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH--
Confidence 45667777766 78999999999997642 112222333333 222 2379999999999988888
Q ss_pred CCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCC
Q 000888 743 PGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN 822 (1237)
Q Consensus 743 ~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~N 822 (1237)
|+|||| |+++|+|++|+.++|.+||+.++.+ ..+..+
T Consensus 307 -----l~RpgR----------------------------------fdr~i~v~~Pd~~~R~~Il~~~~~~----~~l~~~ 343 (644)
T PRK10733 307 -----LLRPGR----------------------------------FDRQVVVGLPDVRGREQILKVHMRR----VPLAPD 343 (644)
T ss_pred -----HhCCcc----------------------------------cceEEEcCCCCHHHHHHHHHHHhhc----CCCCCc
Confidence 788888 8899999999999999999998855 344555
Q ss_pred chhHHHHhhcCCCCccCccccccccc
Q 000888 823 LNHLRTVLGRSGLECEGLETLCIRDQ 848 (1237)
Q Consensus 823 v~~l~~vL~~~glsgaDL~~Lci~d~ 848 (1237)
++....+-.+.||+|+||..+|.+++
T Consensus 344 ~d~~~la~~t~G~sgadl~~l~~eAa 369 (644)
T PRK10733 344 IDAAIIARGTPGFSGADLANLVNEAA 369 (644)
T ss_pred CCHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 66556666788999999987766543
No 92
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.7e-13 Score=162.71 Aligned_cols=172 Identities=22% Similarity=0.362 Sum_probs=126.8
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc--------
Q 000888 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-------- 1006 (1237)
Q Consensus 935 ~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL-------- 1006 (1237)
+|-.|++++|+.+.+++.-- +.......+-++|+||||+|||++|+.||..++..|++++...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 46689999999999998531 11112222459999999999999999999999999999987554
Q ss_pred -ccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchh-HHHHHHHH-----HHHHHhcCCcccCCccEEEE
Q 000888 1007 -TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH-EAMRKMKN-----EFMVNWDGLRTKDTERILVL 1079 (1237)
Q Consensus 1007 -~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~-~a~~~il~-----eLL~~ldgl~~~~~~~VlVI 1079 (1237)
...|+|.....+-+.+.......| +++|||||.+. ++..++. .++-.++. .|+...-.++. +-.+|++|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFI 558 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEE
Confidence 335788888887777777766665 78899999996 2222222 22222211 12222222222 23689999
Q ss_pred EecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh
Q 000888 1080 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA 1119 (1237)
Q Consensus 1080 aTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~ 1119 (1237)
||+|..+.+++.++.|+ .+|.+.-+..++..+|.+.+|-
T Consensus 559 cTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 99999999999999999 7899999999999999998874
No 93
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=9.4e-13 Score=160.80 Aligned_cols=184 Identities=22% Similarity=0.241 Sum_probs=136.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--------------- 996 (1237)
.+|++++|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 5899999999999999988863 233467899999999999999999999865
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 997 ---------~fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
.++.++.++- ..-..++.+...+.. ....|+||||+|.|- ....+.|+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALLK 140 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALLK 140 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 3444443321 123345555554432 245799999999882 234556666
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.++.. ...+.+|.+|+.+..+.+.+++|+ .++.|..++.++..++++.++.++++. ++..+..|++.+.| +.+
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 345677777788888889999999 789999999999999999999888766 45567889999887 666
Q ss_pred HHHHHHHHHH
Q 000888 1143 DLKNLCVTAA 1152 (1237)
Q Consensus 1143 DL~~L~~~Aa 1152 (1237)
++.+++..+.
T Consensus 215 dALnLLDQaI 224 (702)
T PRK14960 215 DALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 94
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.3e-12 Score=157.52 Aligned_cols=182 Identities=18% Similarity=0.227 Sum_probs=130.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--------------- 996 (1237)
.+|++++|++.+++.|+..+.. .+.+.++||+||||||||++|+++|+.+++
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 5899999999999999887753 223457999999999999999999999865
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 997 ---------~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
.++.++.+.- ..-..++.+.+.+... ...||||||+|.|. ....+.|+.
T Consensus 78 ~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LLk 139 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALLK 139 (472)
T ss_pred HHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHHH
Confidence 3445544321 1123455555554432 34699999999883 223455555
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.++.. +..+++|++|+.+..+.+++++|+ ..+.|..++.++...+++..+...++. ++..+..|++.+.|-.+
T Consensus 140 ~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR- 213 (472)
T PRK14962 140 TLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLR- 213 (472)
T ss_pred HHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-
Confidence 55542 345777777777889999999999 589999999999999999998876654 45567889998877444
Q ss_pred HHHHHHHH
Q 000888 1143 DLKNLCVT 1150 (1237)
Q Consensus 1143 DL~~L~~~ 1150 (1237)
.+.++++.
T Consensus 214 ~aln~Le~ 221 (472)
T PRK14962 214 DALTMLEQ 221 (472)
T ss_pred HHHHHHHH
Confidence 44444443
No 95
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.2e-12 Score=151.29 Aligned_cols=184 Identities=21% Similarity=0.261 Sum_probs=133.0
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|+++.|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999988753 2233568999999999999999999998642
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 998 ----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
++.++.+. ...-..++.+.+.+... ...|++|||+|.+. ....+.|+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk 141 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLK 141 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHH
Confidence 22222211 01233456666555432 24699999999872 223455666
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.++.. +..+.+|.+|+.++.+.+.+++|+ ..+.|.+|+.++..++++..++..+.. ++..+..++..+.| +.+
T Consensus 142 ~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66553 345666777777888999999999 678999999999999999998887754 45667888998887 566
Q ss_pred HHHHHHHHHH
Q 000888 1143 DLKNLCVTAA 1152 (1237)
Q Consensus 1143 DL~~L~~~Aa 1152 (1237)
++.++++.+.
T Consensus 216 ~al~~l~~~~ 225 (363)
T PRK14961 216 DALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 96
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.49 E-value=4.8e-13 Score=163.69 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=141.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1001 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~I 1001 (1237)
.+|+++.|.+...+.|+..+.. ..+.++||+||||||||++|+++.+.+ +.+|+.+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 5799999999999888865431 122589999999999999999998753 3689999
Q ss_pred ecccc-------ccccccccHHHH---HHHHH----------HHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHH
Q 000888 1002 SMSSI-------TSKWFGEGEKYV---KAVFS----------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1061 (1237)
Q Consensus 1002 d~seL-------~s~~~G~se~~I---~~lF~----------~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eL 1061 (1237)
+|... ....++.....+ ...|. ...+...++||||||+.| +...+..+.+++++-
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-----~~~~q~~LL~~Le~~ 202 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-----HPVQMNKLLKVLEDR 202 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----CHHHHHHHHHHHHhC
Confidence 98642 111111100000 00000 111223489999999988 222222222222221
Q ss_pred HHHhcC-----C------------cccCCcc-EEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000888 1062 MVNWDG-----L------------RTKDTER-ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1123 (1237)
Q Consensus 1062 L~~ldg-----l------------~~~~~~~-VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l 1123 (1237)
...+.. . ....+.. .+|++||+.++.+++++++|+ ..+.|+.++.+++.+|++..+++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i 281 (531)
T TIGR02902 203 KVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGI 281 (531)
T ss_pred eeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 111110 0 0000112 455567788999999999999 57888999999999999999988765
Q ss_pred C-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHH
Q 000888 1124 S-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 1199 (1237)
Q Consensus 1124 ~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~ 1199 (1237)
. ++..++.|++.+. +++++.++++.|+..+..+ ....++.+|+++++.
T Consensus 282 ~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~--------------------------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 282 NLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE--------------------------GRKRILAEDIEWVAE 330 (531)
T ss_pred CcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC--------------------------CCcEEcHHHHHHHhC
Confidence 5 4445666776654 7899999999888654321 113589999999986
No 97
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.3e-14 Score=157.20 Aligned_cols=170 Identities=14% Similarity=0.205 Sum_probs=135.4
Q ss_pred eeeccCCCCCCCCCCCC--CCCCCcccccc-ccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---
Q 000888 632 GVRFDKPIPDGVDLGGQ--CEGGHGFFCNV-TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--- 705 (1237)
Q Consensus 632 gV~Fd~~~~~~~~l~~~--c~~~~~ff~~~-~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~--- 705 (1237)
||+.-+|||+|+||-+. ....++-|.|+ |..-..|+||| .-+.++.||+.+.. ...+|||||||+.+=+
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvge--garmvrelf~mart---kkaciiffdeidaiggarf 287 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE--GARMVRELFEMART---KKACIIFFDEIDAIGGARF 287 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhh--hHHHHHHHHHHhcc---cceEEEEeeccccccCccc
Confidence 78888999999996522 22223557775 67778899999 99999999999999 8999999999998544
Q ss_pred -CCcchhhhHHHHH----hcC-----CCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCC
Q 000888 706 -GNSDSYSTFKSRL----EKL-----PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGK 775 (1237)
Q Consensus 706 -~~~~~~~~lk~~L----~~l-----~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~ 775 (1237)
....-.|.++.++ .+| +|||-|+-+||++|.-||+ |-||||
T Consensus 288 ddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpa-------llrpgr---------------------- 338 (435)
T KOG0729|consen 288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPA-------LLRPGR---------------------- 338 (435)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHh-------hcCCcc----------------------
Confidence 1123344455443 233 6899999999999999999 888999
Q ss_pred CchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccc
Q 000888 776 EIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 851 (1237)
Q Consensus 776 ~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls 851 (1237)
.+++++|.|||-|+|..||++|... .....++.+.-.+-.|.+-.|++|+++|+++-++.
T Consensus 339 ------------ldrkvef~lpdlegrt~i~kihaks----msverdir~ellarlcpnstgaeirsvcteagmfa 398 (435)
T KOG0729|consen 339 ------------LDRKVEFGLPDLEGRTHIFKIHAKS----MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred ------------cccceeccCCcccccceeEEEeccc----cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH
Confidence 5689999999999999999999854 45566777776777789999999999999987743
No 98
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1e-12 Score=164.37 Aligned_cols=184 Identities=22% Similarity=0.250 Sum_probs=133.7
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 998 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f------------- 998 (1237)
.+|++|+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+++.-
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 6899999999999999988753 12335579999999999999999999996641
Q ss_pred -----------EEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 999 -----------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 999 -----------i~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
+.++... ...-..++.+...+.. ....|+||||+|.|- ...++.||.
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLK 141 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLK 141 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 1111110 0112335555544432 345699999999882 345667777
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.|+.. ..++.+|.+|+.+..|.+.|++|+ .++.|..++.++..++|+.++..+++. .+..+..|++.+.| +.+
T Consensus 142 tLEEP----P~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEEP----PEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhcc----CCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 76653 356777777888888999999999 789999999999999999988876655 44567888999988 555
Q ss_pred HHHHHHHHHH
Q 000888 1143 DLKNLCVTAA 1152 (1237)
Q Consensus 1143 DL~~L~~~Aa 1152 (1237)
++.++|..|.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.48 E-value=8.8e-13 Score=168.83 Aligned_cols=197 Identities=20% Similarity=0.308 Sum_probs=141.9
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1001 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~I 1001 (1237)
-.++++.|.++....+.+.+.. +...++||+||||+|||++|+.+|+.+ +..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3567889998876666554432 122589999999999999999999987 3567888
Q ss_pred eccccc--cccccccHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEE
Q 000888 1002 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1078 (1237)
Q Consensus 1002 d~seL~--s~~~G~se~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlV 1078 (1237)
+++.+. ..+.|+.+..++.+++.++.. .+.|||||||+.|.+.+...+...+. +.|.-.+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHh------hCCCeEE
Confidence 888775 367889999999999998753 57899999999998765432222221 2222222 2467889
Q ss_pred EEecCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC----CCC-ChhhHHHHHHHcCCCcH-----HH
Q 000888 1079 LAATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGYSG-----SD 1143 (1237)
Q Consensus 1079 IaTTN~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~----~l~-~d~dl~~LA~~T~GySg-----aD 1143 (1237)
|+||+.. ..+|+++.||| ..|.|+.|+.+++.+||+.+.... ++. .+..+..++.++.+|.. .-
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 9998863 46899999999 589999999999999987766432 222 56667888888887754 22
Q ss_pred HHHHHHHHHH
Q 000888 1144 LKNLCVTAAH 1153 (1237)
Q Consensus 1144 L~~L~~~Aa~ 1153 (1237)
-..|+++|+.
T Consensus 399 AIdlldea~a 408 (852)
T TIGR03345 399 AVSLLDTACA 408 (852)
T ss_pred HHHHHHHHHH
Confidence 2355565543
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.4e-12 Score=158.64 Aligned_cols=185 Identities=17% Similarity=0.189 Sum_probs=137.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|+|++|++.+.+.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 5899999999999999998853 2233568999999999999999999999652
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 998 ----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
++.++.+. ...-..++.+.+.+.. ....|+||||+|.|. ...++.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLLk 141 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALLK 141 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHHH
Confidence 44454332 1223345555554432 234699999999883 234566666
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++.++++. ++..+..|++.+.| +.+
T Consensus 142 ~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66653 345777777788888988999999 778999999999999999999888765 44567888888877 666
Q ss_pred HHHHHHHHHHH
Q 000888 1143 DLKNLCVTAAH 1153 (1237)
Q Consensus 1143 DL~~L~~~Aa~ 1153 (1237)
++.++++.+..
T Consensus 216 ~al~lLdq~ia 226 (509)
T PRK14958 216 DALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHh
Confidence 77777766543
No 101
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.47 E-value=8.7e-13 Score=156.40 Aligned_cols=222 Identities=21% Similarity=0.298 Sum_probs=141.5
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccc
Q 000888 937 IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE 1013 (1237)
Q Consensus 937 I~Gle~vK~~L~e~V~~pl~~pe~f~k--~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s-~~~G~ 1013 (1237)
++|++.+++.|...+..+..+...... .....+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 689999999997776543332211100 011224468999999999999999999999999999999988753 57776
Q ss_pred cH-HHHHHHHHH----HHhcCCcEEEEccchhhhcCCCCCch-h-HHHHHHHHHHHHHhcCCc---------ccCCccEE
Q 000888 1014 GE-KYVKAVFSL----ASKIAPSVIFVDEVDSMLGRRENPGE-H-EAMRKMKNEFMVNWDGLR---------TKDTERIL 1077 (1237)
Q Consensus 1014 se-~~I~~lF~~----A~k~~PsILfIDEID~L~~~r~~~~~-~-~a~~~il~eLL~~ldgl~---------~~~~~~Vl 1077 (1237)
.. ..+..++.. ..+..++||||||||.+.....+... . ..-..+.+.||..|++-. ..+..+++
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 53 344554442 23457899999999999765332211 0 001235666777776531 11123456
Q ss_pred EEEecCCCC----------------------------------------------------CCcHHHHhhccccccCCCC
Q 000888 1078 VLAATNRPF----------------------------------------------------DLDEAVIRRLPRRLMVNLP 1105 (1237)
Q Consensus 1078 VIaTTN~p~----------------------------------------------------~Ld~aLlrRFd~~I~v~~P 1105 (1237)
+|+|+|-.+ -+.|+|+.|++.++.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 666655410 1457888899999999999
Q ss_pred CHHHHHHHHHH----HHh-------hCCCC---ChhhHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHH
Q 000888 1106 DAPNRAKILQV----ILA-------KEDLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKE 1158 (1237)
Q Consensus 1106 d~eeR~eILk~----~L~-------~~~l~---~d~dl~~LA~~--T~GySgaDL~~L~~~Aa~~aire 1158 (1237)
+.++..+|+.. +++ ..++. ++.-++.|++. ..++-.+.|+.+++......+.+
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 99999999973 322 22222 33445666664 34555666666666665555444
No 102
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.2e-12 Score=161.60 Aligned_cols=184 Identities=22% Similarity=0.281 Sum_probs=135.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|++++|++.+++.|+..+.. .+-+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 5899999999999999988863 1223568999999999999999999999662
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 998 ----------fi~Id~seL~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
++.++... ...-..++.+...+. .....|+||||+|.|- ....|.||.
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLK 141 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHH
Confidence 23333221 012233555544443 2345699999999882 345667777
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.++.- ...+.+|.+|+.+..|.+.+++|+ ..+.|..++.++...+|+.++..+++. ++..+..|++.+.|. .+
T Consensus 142 tLEEP----p~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs-~R 215 (647)
T PRK07994 142 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS-MR 215 (647)
T ss_pred HHHcC----CCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 66653 456777777888899999999998 889999999999999999998877765 445678899998884 44
Q ss_pred HHHHHHHHHH
Q 000888 1143 DLKNLCVTAA 1152 (1237)
Q Consensus 1143 DL~~L~~~Aa 1152 (1237)
+..+++..|.
T Consensus 216 ~Al~lldqai 225 (647)
T PRK07994 216 DALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHH
Confidence 5556665543
No 103
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=3.1e-12 Score=154.00 Aligned_cols=186 Identities=21% Similarity=0.247 Sum_probs=140.0
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 996 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 996 (1237)
..+|+|++|++.+.+.|+..+.. .+.+.++||+||+|+|||++|+.+|+.+.+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 36899999999999999887753 234468999999999999999999997632
Q ss_pred ----------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 997 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 997 ----------~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
.++.++.++- ..-..++.+.+.+... ...|++|||+|.|. ...++.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3455555421 1234566676666433 34699999999882 23456677
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..++++..+.++++. ++..+..|++.+.| +.
T Consensus 138 K~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666653 345777777788888999999999 678999999999999999999888765 55667888999887 66
Q ss_pred HHHHHHHHHHHH
Q 000888 1142 SDLKNLCVTAAH 1153 (1237)
Q Consensus 1142 aDL~~L~~~Aa~ 1153 (1237)
+++.++++.+..
T Consensus 212 R~alslLdqli~ 223 (491)
T PRK14964 212 RNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHH
Confidence 677777766653
No 104
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=4.1e-12 Score=156.51 Aligned_cols=186 Identities=22% Similarity=0.279 Sum_probs=138.5
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|+||+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 35899999999999999998763 2334679999999999999999999998543
Q ss_pred -----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 998 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 998 -----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
++.++... ......++.++..+.. ....||||||+|.|- ...++.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 12222111 1223456666665432 234799999999772 23455666
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++...+|+.++.++++. ++..+..|++.+.| +.
T Consensus 141 KtLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 666653 345777778888999999999999 778899999999999999999988765 44567889999877 66
Q ss_pred HHHHHHHHHHHH
Q 000888 1142 SDLKNLCVTAAH 1153 (1237)
Q Consensus 1142 aDL~~L~~~Aa~ 1153 (1237)
+++.++++.+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 105
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.45 E-value=4.2e-12 Score=151.26 Aligned_cols=180 Identities=25% Similarity=0.420 Sum_probs=126.7
Q ss_pred ccchhccccHHHHHH---HHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 932 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~---L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+++|++|++++... |...+.. ....++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 478999999998655 7777642 122489999999999999999999999999999987532
Q ss_pred ccccccHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEec--
Q 000888 1009 KWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 1082 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTT-- 1082 (1237)
....++.+++.+. .....||||||||.+. ....+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhhc------CcEEEEEeCCC
Confidence 2234555555553 2256899999999872 1122334443332 345666554
Q ss_pred CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC--CC--CChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1083 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--DL--SPDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1083 N~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~--~l--~~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
|....+++++++|| ..+.|..++.++...+++..+... ++ .++..++.|++.+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33468899999999 788999999999999999987652 22 234456788888866 4555556666554
No 106
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-13 Score=149.18 Aligned_cols=192 Identities=17% Similarity=0.253 Sum_probs=148.4
Q ss_pred eeeccCCCCCCCC-CCCCCCCCC--ccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---
Q 000888 632 GVRFDKPIPDGVD-LGGQCEGGH--GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--- 705 (1237)
Q Consensus 632 gV~Fd~~~~~~~~-l~~~c~~~~--~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~--- 705 (1237)
||+.-+|||||+| +|--|-.-. +|..=+|-.-..-+.|+ .-.+++--|.++++ ..|.||||||++.+=.
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGd--GAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKRf 281 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGD--GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRF 281 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcc--hHHHHHHHHHHhhc---cCCeEEEEechhhhccccc
Confidence 7888899999999 455564333 77766676666666777 77889999999999 9999999999998543
Q ss_pred -----CCcchhhhHHHHHhcCCC-----cEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCC
Q 000888 706 -----GNSDSYSTFKSRLEKLPD-----KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGK 775 (1237)
Q Consensus 706 -----~~~~~~~~lk~~L~~l~g-----~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~ 775 (1237)
|..+.-...-..|.+|.| .|-||.+||+.|--||+ |-|-||
T Consensus 282 DSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPA-------LlRSGR---------------------- 332 (424)
T KOG0652|consen 282 DSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPA-------LLRSGR---------------------- 332 (424)
T ss_pred cccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHH-------Hhhccc----------------------
Confidence 333333333344455544 89999999999977777 556666
Q ss_pred CchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHH
Q 000888 776 EIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESA 855 (1237)
Q Consensus 776 ~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~i 855 (1237)
++++|+|++|++++|.+|+++|..+ ....+++++.+.+-.+-++.|+-++.+|+++-++
T Consensus 333 ------------LDRKIEfP~Pne~aRarIlQIHsRK----Mnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMi----- 391 (424)
T KOG0652|consen 333 ------------LDRKIEFPHPNEEARARILQIHSRK----MNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMI----- 391 (424)
T ss_pred ------------ccccccCCCCChHHHHHHHHHhhhh----cCCCCCCCHHHHhhcccccCchhheeeehhhhHH-----
Confidence 6789999999999999999999866 5678889999999999999999999999987551
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHHHH
Q 000888 856 EKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQA 895 (1237)
Q Consensus 856 e~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~lq~ 895 (1237)
|+ +...--++.++|..++..+|.
T Consensus 392 ------AL-----------Rr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 392 ------AL-----------RRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred ------HH-----------hcccccccHHHHHHHHHHHHH
Confidence 22 223445788999988887664
No 107
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.44 E-value=4.8e-12 Score=147.58 Aligned_cols=201 Identities=18% Similarity=0.225 Sum_probs=128.3
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 000888 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 1005 (1237)
Q Consensus 935 ~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---------~~fi~Id~se 1005 (1237)
+++.|.++..+.|...+...+. + ..+.+++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4688999888888887753111 1 2235799999999999999999998762 6788888865
Q ss_pred cccc----------cc--c--------ccHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHH
Q 000888 1006 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1064 (1237)
Q Consensus 1006 L~s~----------~~--G--------~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ 1064 (1237)
..+. .. + ........++..... ..+.||+|||+|.|.+.. ..++.+++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 4221 10 1 012233445554433 346799999999996221 1234444433
Q ss_pred hcCCcccCCccEEEEEecCCCC---CCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhh---CCCCChhhHHH---HHH
Q 000888 1065 WDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAK---EDLSPDVDFDA---IAN 1134 (1237)
Q Consensus 1065 ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd-~~I~v~~Pd~eeR~eILk~~L~~---~~l~~d~dl~~---LA~ 1134 (1237)
++. ....+.++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+.. ....++..+.. ++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236789999999875 57888888885 57899999999999999998863 12222322333 344
Q ss_pred HcCCCcHHHHHHHHHHHHHHHH
Q 000888 1135 MTDGYSGSDLKNLCVTAAHRPI 1156 (1237)
Q Consensus 1135 ~T~GySgaDL~~L~~~Aa~~ai 1156 (1237)
.+.|... ...++|..|+..+.
T Consensus 235 ~~~Gd~R-~al~~l~~a~~~a~ 255 (365)
T TIGR02928 235 QEHGDAR-KAIDLLRVAGEIAE 255 (365)
T ss_pred HhcCCHH-HHHHHHHHHHHHHH
Confidence 4556544 44567777776554
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=8.8e-13 Score=169.23 Aligned_cols=164 Identities=22% Similarity=0.355 Sum_probs=125.2
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~Id 1002 (1237)
.++.+.|.++....+.+.+.. +...++||+||||+|||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 466788998876666665542 122579999999999999999999988 78899999
Q ss_pred ccccc--cccccccHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEE
Q 000888 1003 MSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1237)
Q Consensus 1003 ~seL~--s~~~G~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1237)
+..+. .++.|+.+..++.+|..+.+ ..+.||||||||.|.+.....+...+. +.|...+ .++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~----~~lkp~l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG----NMLKPAL------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH----HHhcchh------hcCCCeEE
Confidence 88875 46788999999999988654 468899999999998765433332221 2121111 34678999
Q ss_pred EecCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC
Q 000888 1080 AATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE 1121 (1237)
Q Consensus 1080 aTTN~p~-----~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~ 1121 (1237)
|+|+..+ .+|+++.|||. .|.++.|+.+++..|++.+....
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9998765 58999999996 68899999999999998876543
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4.3e-12 Score=153.74 Aligned_cols=186 Identities=21% Similarity=0.273 Sum_probs=137.8
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|+|++|++.+.+.|+..+.. .+.+.++||+||+|+|||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999887653 2334689999999999999999999998652
Q ss_pred ---------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHH
Q 000888 998 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMK 1058 (1237)
Q Consensus 998 ---------------fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il 1058 (1237)
++.++... ......++.+++.+... ...|+||||+|.|. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 22222211 12345567777766543 34699999999872 2334
Q ss_pred HHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcC
Q 000888 1059 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 1137 (1237)
Q Consensus 1059 ~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~ 1137 (1237)
+.|+..++. ....+++|.+|+.++.+.+.+++|+ ..+.|..++.++...+++..++++++. ++..+..|++.+.
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 556666554 2456777777788888999999999 678999999999999999999888765 4455788999988
Q ss_pred CCcHHHHHHHHHHHHH
Q 000888 1138 GYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1138 GySgaDL~~L~~~Aa~ 1153 (1237)
| +.+++.++++.+..
T Consensus 221 G-slR~al~~Ldkai~ 235 (507)
T PRK06645 221 G-SARDAVSILDQAAS 235 (507)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 66677677666643
No 110
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.43 E-value=3.1e-12 Score=154.02 Aligned_cols=168 Identities=19% Similarity=0.320 Sum_probs=113.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1045 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1045 (1237)
+.++||||+|+|||+|++++++++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999998 566888888877554433221111122332222 47899999999885432
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhh
Q 000888 1046 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAK 1120 (1237)
Q Consensus 1046 ~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~~I~v~~Pd~eeR~eILk~~L~~ 1120 (1237)
. .++.+-.+++.+. . ....+||++...|.. +++.+++||. ..+.+..|+.++|..|++..+..
T Consensus 228 ~---~~~~l~~~~n~l~-------~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 R---TQEEFFHTFNALH-------E--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---HHHHHHHHHHHHH-------H--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1 1122222222221 1 123456655555544 6789999995 47889999999999999999987
Q ss_pred CCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1121 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1121 ~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
.++. ++..++.||....| +.++|..++....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 6554 55668889998887 6667666655443
No 111
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=3.2e-12 Score=143.80 Aligned_cols=206 Identities=26% Similarity=0.423 Sum_probs=138.7
Q ss_pred ccchhccccHHHHHH---HHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccc
Q 000888 932 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSS 1005 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~---L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~---fi~Id~se 1005 (1237)
.+++|++|++++..+ |+.+|.. ..+.+++|+||||||||+||+.|+....-+ |+.++...
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq--------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ--------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc--------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 467788888777543 3444431 223589999999999999999999988665 77766532
Q ss_pred cccccccccHHHHHHHHHHHHhc-----CCcEEEEccchhhhcCCCCCchhHHHHHHHH-HHHHHhcCCcccCCccEEEE
Q 000888 1006 ITSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKN-EFMVNWDGLRTKDTERILVL 1079 (1237)
Q Consensus 1006 L~s~~~G~se~~I~~lF~~A~k~-----~PsILfIDEID~L~~~r~~~~~~~a~~~il~-eLL~~ldgl~~~~~~~VlVI 1079 (1237)
..-.-++.+|+.+++. ...|||||||+++ + +..+ .|| +..+++.|++|
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----N--------ksQQD~fL------P~VE~G~I~lI 254 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----N--------KSQQDTFL------PHVENGDITLI 254 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----h--------hhhhhccc------ceeccCceEEE
Confidence 3345688899888654 3579999999977 1 2222 232 22245678888
Q ss_pred Eec--CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC--------CCC------ChhhHHHHHHHcCCCcHHH
Q 000888 1080 AAT--NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--------DLS------PDVDFDAIANMTDGYSGSD 1143 (1237)
Q Consensus 1080 aTT--N~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~--------~l~------~d~dl~~LA~~T~GySgaD 1143 (1237)
++| |..+.|..++++|+ +++.+.....+....||...+.-. ++. ++.-++.|+..++|-....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 766 44578999999999 778888889999999998855411 122 2234678899999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000888 1144 LKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1201 (1237)
Q Consensus 1144 L~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v 1201 (1237)
|..| +.++.....+ ++. ....+|+.+|+++++..-
T Consensus 334 LN~L-ems~~m~~tr--------------~g~--------~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 334 LNAL-EMSLSMFCTR--------------SGQ--------SSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHH-HHHHHHHHhh--------------cCC--------cccceecHHHHHHHHhhc
Confidence 7544 3332211111 111 133578999999988764
No 112
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=3.5e-12 Score=150.56 Aligned_cols=187 Identities=17% Similarity=0.236 Sum_probs=129.1
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------- 997 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~--------------- 997 (1237)
.|++|+|++.+++.|+..+......+..+ + .+.+.++||+||+|+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999997643322211 1 1234789999999999999999999988543
Q ss_pred --------EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHh
Q 000888 998 --------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1065 (1237)
Q Consensus 998 --------fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~l 1065 (1237)
+..+.... . ...-..++.+++.+... ...|+||||+|.|. ....+.|+..+
T Consensus 79 ~~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~L 141 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAV 141 (394)
T ss_pred HhcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHh
Confidence 11221110 0 11234477788777653 34699999999882 22346677666
Q ss_pred cCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHH
Q 000888 1066 DGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLK 1145 (1237)
Q Consensus 1066 dgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~ 1145 (1237)
+.. ..++++|.+|+.++.+.+.+++|+ ..+.|+.|+.++..+++... .++. ......++..+.|..+..+.
T Consensus 142 Eep----~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP----PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC----CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 653 233445555555899999999999 78999999999988777632 2333 45567889999998887766
Q ss_pred HHHH
Q 000888 1146 NLCV 1149 (1237)
Q Consensus 1146 ~L~~ 1149 (1237)
.+..
T Consensus 213 l~~~ 216 (394)
T PRK07940 213 LATD 216 (394)
T ss_pred HhcC
Confidence 5443
No 113
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=4.1e-12 Score=154.23 Aligned_cols=186 Identities=26% Similarity=0.367 Sum_probs=132.5
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1010 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~ 1010 (1237)
..+++++.|.+++++.|+.++.... + ..+.+++||+||||+|||++|+++|++++++++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 3579999999999999999885422 1 233578999999999999999999999999999999876432
Q ss_pred ccccHHHHHHHHHHHHh------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC
Q 000888 1011 FGEGEKYVKAVFSLASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1084 (1237)
Q Consensus 1011 ~G~se~~I~~lF~~A~k------~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1084 (1237)
...+..+...+.. ..+.||+|||+|.|.+..+ . ...+.|+..++. .+..+|+++|.
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~----~~~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----R----GGARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----h----hHHHHHHHHHHc------CCCCEEEeccC
Confidence 1233333333322 2467999999998854211 1 122334333432 12345567888
Q ss_pred CCCCcH-HHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHH
Q 000888 1085 PFDLDE-AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNL 1147 (1237)
Q Consensus 1085 p~~Ld~-aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L 1147 (1237)
+..+.. .+++|+ ..|.|+.|+.+++..+++.++...++. ++..+..|++.+.|.....|..|
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 888887 666666 679999999999999999999887765 45668889998877555444444
No 114
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.42 E-value=2.7e-12 Score=165.11 Aligned_cols=184 Identities=21% Similarity=0.355 Sum_probs=135.7
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~Id 1002 (1237)
.++.+.|.++....+.+.+.. +...++||+||||+|||++|+++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 456788988876666665542 223578999999999999999999986 67788888
Q ss_pred ccccc--cccccccHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEE
Q 000888 1003 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1237)
Q Consensus 1003 ~seL~--s~~~G~se~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1237)
+..+. ..|.|+.+..++.+|..+.+. .+.||||||||.|.+.....+... +.+.|.-.+ .++.+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh------hcCceEEE
Confidence 88775 467888899999999988764 589999999999986543322222 222221111 24678999
Q ss_pred EecCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-----ChhhHHHHHHHcCCCcH
Q 000888 1080 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-----PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1080 aTTN~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-----~d~dl~~LA~~T~GySg 1141 (1237)
++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+..+.... .+..+..++.++.+|..
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 998875 468999999995 68999999999999999876654322 34456677777776643
No 115
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.42 E-value=2.5e-12 Score=164.93 Aligned_cols=184 Identities=23% Similarity=0.365 Sum_probs=138.9
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1002 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~Id 1002 (1237)
.++.+.|.++..+.+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 466788999888888887652 223589999999999999999999987 47899999
Q ss_pred ccccc--cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEE
Q 000888 1003 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1080 (1237)
Q Consensus 1003 ~seL~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIa 1080 (1237)
+..+. .+|.|+.+..++.+++.+....+.||||||||.|++.....+..... +.|.-.+ .++.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a----~lLkp~l------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA----NILKPAL------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH----HHhHHHH------hCCCcEEEE
Confidence 98876 47789999999999999988888999999999998765433322211 2121111 245688888
Q ss_pred ecCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh----CCCC-ChhhHHHHHHHcCCCcH
Q 000888 1081 ATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1081 TTN~p-----~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~----~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
+|+.. ...++++.+||. .|.+..|+.++...|++.+... ..+. ++..+..++.++.+|.+
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 88865 357899999995 5789999999999998876532 2232 45557777888877655
No 116
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6.6e-12 Score=154.81 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=135.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|++++|++.+.+.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 5899999999999999998863 2233568999999999999999999998641
Q ss_pred ---------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHH
Q 000888 998 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMK 1058 (1237)
Q Consensus 998 ---------------fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il 1058 (1237)
++.++... ...-..++.+.+.+... ...|++|||+|.|. ...+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~ 141 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAF 141 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHH
Confidence 22232211 11223456666655432 24699999999883 2345
Q ss_pred HHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcC
Q 000888 1059 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 1137 (1237)
Q Consensus 1059 ~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~ 1137 (1237)
|.|+..++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..++++..+.++++. ++..+..|++.+.
T Consensus 142 NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6676666552 356677777778888888999999 789999999999999999999888766 4455788899888
Q ss_pred CCcHHHHHHHHHHHH
Q 000888 1138 GYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1138 GySgaDL~~L~~~Aa 1152 (1237)
| +.+++.+++..+.
T Consensus 217 G-slR~al~lLdq~i 230 (618)
T PRK14951 217 G-SMRDALSLTDQAI 230 (618)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6667767765544
No 117
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=7.1e-12 Score=153.24 Aligned_cols=185 Identities=21% Similarity=0.276 Sum_probs=136.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5899999999999999988763 2333568999999999999999999999652
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 998 ----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
++.++.+. ...-..++.+...+... ...|+||||+|.|. ....+.|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK 141 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLK 141 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHH
Confidence 22222211 12234566676666432 34699999999882 234566777
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.+...+.++++. ++..+..|++.+.| +.+
T Consensus 142 ~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 76663 356777777777888888899999 789999999999999999998887765 34557888888887 556
Q ss_pred HHHHHHHHHHH
Q 000888 1143 DLKNLCVTAAH 1153 (1237)
Q Consensus 1143 DL~~L~~~Aa~ 1153 (1237)
++.++++.|..
T Consensus 216 ~al~lldqai~ 226 (527)
T PRK14969 216 DALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHH
Confidence 66677766553
No 118
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.41 E-value=3e-12 Score=149.88 Aligned_cols=179 Identities=26% Similarity=0.374 Sum_probs=128.4
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-c
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1013 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s-~~~G-~ 1013 (1237)
.|+|+++.++.+...+.....+........-..++++|||+||||+|||++|+++|..++.+|+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 4689999999998777654333221111111224489999999999999999999999999999999988763 6777 4
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 000888 1014 GEKYVKAVFSLAS------------------------------------------------------------------- 1026 (1237)
Q Consensus 1014 se~~I~~lF~~A~------------------------------------------------------------------- 1026 (1237)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5676666666550
Q ss_pred ------------------------------------------------------------------------hcCCcEEE
Q 000888 1027 ------------------------------------------------------------------------KIAPSVIF 1034 (1237)
Q Consensus 1027 ------------------------------------------------------------------------k~~PsILf 1034 (1237)
..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 12456999
Q ss_pred EccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc------ccCCccEEEEEecC----CCCCCcHHHHhhccccccCCC
Q 000888 1035 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------TKDTERILVLAATN----RPFDLDEAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1035 IDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~------~~~~~~VlVIaTTN----~p~~Ld~aLlrRFd~~I~v~~ 1104 (1237)
|||||.++.+....+....-.-+.+.||..++|-. .-+..++++|++.. .|.+|-|+|.-||+.++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 99999998654211111111235566777776622 12347889998753 577888999999999999999
Q ss_pred CCHHHHHHHH
Q 000888 1105 PDAPNRAKIL 1114 (1237)
Q Consensus 1105 Pd~eeR~eIL 1114 (1237)
++.++...||
T Consensus 333 L~~edL~rIL 342 (441)
T TIGR00390 333 LTTDDFERIL 342 (441)
T ss_pred CCHHHHHHHh
Confidence 9999999988
No 119
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=1.2e-11 Score=145.96 Aligned_cols=225 Identities=18% Similarity=0.208 Sum_probs=142.9
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc
Q 000888 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS 1008 (1237)
Q Consensus 934 f~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s 1008 (1237)
.+.+.|-++..+.|...+...+. ...+.+++|+||||+|||++++.+++++ ++.++.+++....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35677888888888777643111 1123579999999999999999999887 57889998864321
Q ss_pred ----------cccc--------ccHHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc
Q 000888 1009 ----------KWFG--------EGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1069 (1237)
Q Consensus 1009 ----------~~~G--------~se~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~ 1069 (1237)
...+ .....+..++..... ..+.||+|||+|.+..... ..++..|+..+....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~--------~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG--------NDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC--------chHHHHHHHhhhccC
Confidence 1111 112333444444333 3467999999999862211 124455555454432
Q ss_pred ccCCccEEEEEecCCC---CCCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhhC---CCCChhhHHHHHHHcCCCc--
Q 000888 1070 TKDTERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIANMTDGYS-- 1140 (1237)
Q Consensus 1070 ~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd-~~I~v~~Pd~eeR~eILk~~L~~~---~l~~d~dl~~LA~~T~GyS-- 1140 (1237)
..++.+|+++|.. +.+++.+.+||. ..+.|++++.++..+|++..+... ...++..++.+++.+.+.+
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2378888888865 357788888874 568999999999999999987542 1234445677777774322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCc
Q 000888 1141 GSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 1205 (1237)
Q Consensus 1141 gaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~ 1205 (1237)
.+.+.++|..|+..+..+ ....|+.+|+..|+.++..+.
T Consensus 248 ~r~a~~ll~~a~~~a~~~--------------------------~~~~I~~~~v~~a~~~~~~~~ 286 (394)
T PRK00411 248 ARVAIDLLRRAGLIAERE--------------------------GSRKVTEEDVRKAYEKSEIVH 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHc--------------------------CCCCcCHHHHHHHHHHHHHHH
Confidence 233445666665543321 113578888888887764433
No 120
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.41 E-value=8.7e-12 Score=148.16 Aligned_cols=168 Identities=21% Similarity=0.319 Sum_probs=111.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1045 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1045 (1237)
..++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 577888988776543322211100111222222 35799999999885432
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC---CCcHHHHhhccc--cccCCCCCHHHHHHHHHHHHhh
Q 000888 1046 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLPR--RLMVNLPDAPNRAKILQVILAK 1120 (1237)
Q Consensus 1046 ~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd~--~I~v~~Pd~eeR~eILk~~L~~ 1120 (1237)
..++.+-.+++.+. . ....+||+++..|. .+++.+++||.. .+.++.|+.++|..|++..++.
T Consensus 216 ---~~~~~l~~~~n~~~-------~--~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQEEFFHTFNALH-------E--NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHHHHHHHHHHHH-------H--CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 11222222222221 1 12345565555554 466889999964 6899999999999999999987
Q ss_pred CCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1121 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1121 ~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
.++. ++..++.||+...+ +.++|..++....
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 7665 55667889988876 6667766655443
No 121
>PLN03025 replication factor C subunit; Provisional
Probab=99.41 E-value=6.2e-12 Score=144.88 Aligned_cols=181 Identities=22% Similarity=0.225 Sum_probs=124.3
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1005 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-----~~fi~Id~se 1005 (1237)
..+++++.|.+++.+.|+.++.. . ...++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 35899999999999999887652 1 123799999999999999999999982 2355566554
Q ss_pred cccccccccHHHHHHHHHH-HHh------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEE
Q 000888 1006 ITSKWFGEGEKYVKAVFSL-ASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 1078 (1237)
Q Consensus 1006 L~s~~~G~se~~I~~lF~~-A~k------~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlV 1078 (1237)
..+ ...++..... +.. ..+.||+|||+|.|. ...+ +.|+..++.. ...+.+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq-------~aL~~~lE~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQ-------QALRRTMEIY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHH-------HHHHHHHhcc----cCCceE
Confidence 322 1123332221 111 235799999999883 1112 2333333322 223456
Q ss_pred EEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHH
Q 000888 1079 LAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCV 1149 (1237)
Q Consensus 1079 IaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~ 1149 (1237)
|.+||....+.+++++|+ ..+.|..|+.++...+++..++++++. ++..+..|+..+.|-. +.+.+.++
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDl-R~aln~Lq 202 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDM-RQALNNLQ 202 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 667888888889999998 689999999999999999999887765 5566888888887743 34444444
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.2e-11 Score=150.96 Aligned_cols=184 Identities=21% Similarity=0.276 Sum_probs=132.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--------------- 996 (1237)
.+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 5799999999999999988753 223356999999999999999999998854
Q ss_pred ---------cEEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 997 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 997 ---------~fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
.++.++...- ..-..++.+...+.. ....|+||||+|.|- ....+.|+.
T Consensus 80 ~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLLK 141 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALLK 141 (546)
T ss_pred HHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHHH
Confidence 2333332111 112234555544432 245699999999872 234566666
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..++|..++.++...+++..+.++++. ++..+..|++.+.| +.+
T Consensus 142 ~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 345666666677888888899999 789999999999999999998887765 45557888888876 555
Q ss_pred HHHHHHHHHH
Q 000888 1143 DLKNLCVTAA 1152 (1237)
Q Consensus 1143 DL~~L~~~Aa 1152 (1237)
++.++++.+.
T Consensus 216 ~alnlLek~i 225 (546)
T PRK14957 216 DALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.2e-11 Score=151.83 Aligned_cols=182 Identities=19% Similarity=0.257 Sum_probs=130.1
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|+||.|++.+++.|+..+.. .+-+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 35899999999999999998863 1223589999999999999999999999653
Q ss_pred -----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 998 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 998 -----------fi~Id~seL~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
++.++...- ..-..++.+.+.+. .....||||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 333433210 11123343333322 2345799999999882 23356666
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. ..++++|.+|+.+..+.+.+++|+ ..+.|..++.++...+|+..+...++. ++..+..|++.+.|...
T Consensus 141 k~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 666552 346778888888888888999998 578999999999999999988887763 55667888998887544
Q ss_pred HHHHHHHH
Q 000888 1142 SDLKNLCV 1149 (1237)
Q Consensus 1142 aDL~~L~~ 1149 (1237)
..+ ++++
T Consensus 216 ~Al-~lLe 222 (624)
T PRK14959 216 DSM-SLLG 222 (624)
T ss_pred HHH-HHHH
Confidence 443 4443
No 124
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.9e-13 Score=147.74 Aligned_cols=131 Identities=18% Similarity=0.308 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc--------CCcchhhhHHHHHhcCC-----CcEEEEEeeccCCCccc
Q 000888 673 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLP-----DKVIVIGSHTHTDNRKE 739 (1237)
Q Consensus 673 ~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~--------~~~~~~~~lk~~L~~l~-----g~vvvIGst~~~d~~~~ 739 (1237)
..++|+..|.-+.. .+|+||||||||.+.+ .+.++-..|-..|+.+. ++|-+|.++|++|.-+|
T Consensus 210 saRlIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 210 SARLIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred HHHHHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 55699999999988 9999999999998775 23333344444444443 59999999999998888
Q ss_pred cCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhh
Q 000888 740 KSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKM 819 (1237)
Q Consensus 740 ~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l 819 (1237)
+ |-|||| ++++++|++|++.+|+.|+|.|-... ..
T Consensus 287 a-------LlRpGR----------------------------------ldrk~~iPlpne~~r~~I~Kih~~~i----~~ 321 (388)
T KOG0651|consen 287 A-------LLRPGR----------------------------------LDRKVEIPLPNEQARLGILKIHVQPI----DF 321 (388)
T ss_pred h-------hcCCcc----------------------------------ccceeccCCcchhhceeeEeeccccc----cc
Confidence 8 888888 66799999999999999999887663 33
Q ss_pred cCCchhHHHHhhcCCCCccCcccccccccccc
Q 000888 820 KGNLNHLRTVLGRSGLECEGLETLCIRDQSLT 851 (1237)
Q Consensus 820 ~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls 851 (1237)
+--++..+.+--.-++.|+|++.+|+++-++.
T Consensus 322 ~Geid~eaivK~~d~f~gad~rn~~tEag~Fa 353 (388)
T KOG0651|consen 322 HGEIDDEAILKLVDGFNGADLRNVCTEAGMFA 353 (388)
T ss_pred cccccHHHHHHHHhccChHHHhhhcccccccc
Confidence 33344444444456899999999999987754
No 125
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1.4e-11 Score=151.74 Aligned_cols=185 Identities=24% Similarity=0.330 Sum_probs=136.6
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 996 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 996 (1237)
..+|++++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 35899999999999999988863 233467999999999999999999998843
Q ss_pred ----------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 997 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 997 ----------~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
+++.++.+. +..-..++.+.+.+... ...|+||||+|.|. ...++.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 344444321 12334566676665532 35699999999883 23456666
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. +..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++..+.+.++. ++..+..|++.+.| +.
T Consensus 141 KtLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666553 345677767778899999999999 578899999999999999999888765 44567888998887 55
Q ss_pred HHHHHHHHHHH
Q 000888 1142 SDLKNLCVTAA 1152 (1237)
Q Consensus 1142 aDL~~L~~~Aa 1152 (1237)
++..++++.+.
T Consensus 215 R~al~~Ldq~~ 225 (559)
T PRK05563 215 RDALSILDQAI 225 (559)
T ss_pred HHHHHHHHHHH
Confidence 56656655543
No 126
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=8.6e-12 Score=158.42 Aligned_cols=183 Identities=19% Similarity=0.174 Sum_probs=130.3
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|++|+|++.+++.|+..+.. .+..+.+||+||+|||||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 36899999999999999998863 2233569999999999999999999999642
Q ss_pred -------------EEEEeccccccccccccHHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHH
Q 000888 998 -------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1060 (1237)
Q Consensus 998 -------------fi~Id~seL~s~~~G~se~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~e 1060 (1237)
|+.++.... ..-..++.+.+.+ ......|+||||+|.|. ....|.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHH
Confidence 233332111 0122333333322 33456799999999883 244566
Q ss_pred HHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 000888 1061 FMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGY 1139 (1237)
Q Consensus 1061 LL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~Gy 1139 (1237)
||..|+.. ...+++|++|+.++.|-+.|++|+ ..+.|..++.++..++|+.++.++++. ++..+..|++...|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 77777664 356777777788888999999999 788999999999999999999888765 34456777777776
Q ss_pred cHHHHHHHHHH
Q 000888 1140 SGSDLKNLCVT 1150 (1237)
Q Consensus 1140 SgaDL~~L~~~ 1150 (1237)
+.+++.++++.
T Consensus 214 dlR~Al~eLEK 224 (824)
T PRK07764 214 SVRDSLSVLDQ 224 (824)
T ss_pred CHHHHHHHHHH
Confidence 44454444443
No 127
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.38 E-value=2.8e-11 Score=140.47 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=133.2
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|++++|.+.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+...
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999988752 2234679999999999999999999997432
Q ss_pred -----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 998 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 998 -----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
++.++... ......++.++..+... ...||+|||+|.+. ....+.|+
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 33333221 11233466777766543 23599999999872 22345666
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. ...+++|.+|+.+..+.+.+++|+ ..+.|+.|+.++..++++.++++.++. ++..+..|+..+.| +.
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 666553 345677777888888888999998 578999999999999999999887764 44567778888876 55
Q ss_pred HHHHHHHHHHH
Q 000888 1142 SDLKNLCVTAA 1152 (1237)
Q Consensus 1142 aDL~~L~~~Aa 1152 (1237)
+.+.+.++.+.
T Consensus 213 ~~a~~~lekl~ 223 (355)
T TIGR02397 213 RDALSLLDQLI 223 (355)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 128
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.38 E-value=4.5e-12 Score=148.45 Aligned_cols=179 Identities=23% Similarity=0.371 Sum_probs=128.4
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-c
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1013 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s-~~~G-~ 1013 (1237)
.+.|+++.++.+...+....++..+........++.++||+||||+|||++|+++|+.++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3689999999998887543322211111111122479999999999999999999999999999999988874 6888 4
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 000888 1014 GEKYVKAVFSLAS------------------------------------------------------------------- 1026 (1237)
Q Consensus 1014 se~~I~~lF~~A~------------------------------------------------------------------- 1026 (1237)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4666677666661
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 000888 1027 -----------------------------------------------------------------------KIAPSVIFV 1035 (1237)
Q Consensus 1027 -----------------------------------------------------------------------k~~PsILfI 1035 (1237)
....+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred ccchhhhcCCCCCchhHHH-HHHHHHHHHHhcCCcc------cCCccEEEEEec----CCCCCCcHHHHhhccccccCCC
Q 000888 1036 DEVDSMLGRRENPGEHEAM-RKMKNEFMVNWDGLRT------KDTERILVLAAT----NRPFDLDEAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1036 DEID~L~~~r~~~~~~~a~-~~il~eLL~~ldgl~~------~~~~~VlVIaTT----N~p~~Ld~aLlrRFd~~I~v~~ 1104 (1237)
||||.++....+.+ .... .-+.+.||..++|-.. -+..++++||+. ..|.+|-|+|..||+.++.+..
T Consensus 256 DEiDKIa~~~~~~~-~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 256 DEIDKIAARGGSSG-PDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred EcchhhcccCCCCC-CCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 99999986643211 1111 2355667777766221 134788999875 3577888999999999999999
Q ss_pred CCHHHHHHHHH
Q 000888 1105 PDAPNRAKILQ 1115 (1237)
Q Consensus 1105 Pd~eeR~eILk 1115 (1237)
++.++...||.
T Consensus 335 L~~~dL~~ILt 345 (443)
T PRK05201 335 LTEEDFVRILT 345 (443)
T ss_pred CCHHHHHHHhc
Confidence 99999999883
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=8.2e-12 Score=147.66 Aligned_cols=221 Identities=21% Similarity=0.304 Sum_probs=139.4
Q ss_pred ccccHHHHHHHHHHHhCccCchhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccc
Q 000888 937 IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWF 1011 (1237)
Q Consensus 937 I~Gle~vK~~L~e~V~~pl~~pe~f-~k---~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s-~~~ 1011 (1237)
++|+++.++.+...+.....+.... .. .+......++||+||||+|||++|+++|..++.+|+.+++..+.. .|.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 5899999999887764322221110 00 001112368999999999999999999999999999999887753 577
Q ss_pred ccc-HHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchh-HH-HHHHHHHHHHHhcCCcc---------cCCcc
Q 000888 1012 GEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEH-EA-MRKMKNEFMVNWDGLRT---------KDTER 1075 (1237)
Q Consensus 1012 G~s-e~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~-~a-~~~il~eLL~~ldgl~~---------~~~~~ 1075 (1237)
|.. +..+..++..+ .+..++||||||||.+..++.++... .. -..+.+.||+.|++... .+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 774 44444444322 34467899999999997654322111 10 01456667777765421 12346
Q ss_pred EEEEEecCCCC--------------------------------------------------CCcHHHHhhccccccCCCC
Q 000888 1076 ILVLAATNRPF--------------------------------------------------DLDEAVIRRLPRRLMVNLP 1105 (1237)
Q Consensus 1076 VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRFd~~I~v~~P 1105 (1237)
.++|.|+|-.+ .+.|+|+.|++.++.|...
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 78888877510 1447788899999999999
Q ss_pred CHHHHHHHHHHH----Hhh-------CCCC---ChhhHHHHHHH--cCCCcHHHHHHHHHHHHHHHHH
Q 000888 1106 DAPNRAKILQVI----LAK-------EDLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIK 1157 (1237)
Q Consensus 1106 d~eeR~eILk~~----L~~-------~~l~---~d~dl~~LA~~--T~GySgaDL~~L~~~Aa~~air 1157 (1237)
+.++..+|+... +++ .++. ++.-++.||+. ...+-.+.|+.+++......+.
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 999999998763 221 1221 23345666665 2345566666666655554443
No 130
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.3e-11 Score=149.87 Aligned_cols=184 Identities=21% Similarity=0.279 Sum_probs=132.3
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|+|+.|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 35899999999999999988863 2233557999999999999999999998531
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 998 ----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33344321 1122345555444433 245799999999762 234555666
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.++.. ...+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++.++++.++. ++..+..|++.+.|. .+
T Consensus 139 ~LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd-lR 212 (504)
T PRK14963 139 TLEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA-MR 212 (504)
T ss_pred HHHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 65542 345677777888899999999998 579999999999999999999888765 445678888888874 44
Q ss_pred HHHHHHHHH
Q 000888 1143 DLKNLCVTA 1151 (1237)
Q Consensus 1143 DL~~L~~~A 1151 (1237)
++.++++.+
T Consensus 213 ~aln~Lekl 221 (504)
T PRK14963 213 DAESLLERL 221 (504)
T ss_pred HHHHHHHHH
Confidence 555555543
No 131
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.37 E-value=2.5e-11 Score=139.61 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=123.2
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1005 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-----~~fi~Id~se 1005 (1237)
..+|+++.|.+.+++.|...+.. .. ..++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-------------~~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-------------PN-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-------------CC-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 35789999999999999887752 11 13799999999999999999999983 3567788766
Q ss_pred ccccc-------------ccc-------cHHHHHHHHHHHHh-----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHH
Q 000888 1006 ITSKW-------------FGE-------GEKYVKAVFSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1060 (1237)
Q Consensus 1006 L~s~~-------------~G~-------se~~I~~lF~~A~k-----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~e 1060 (1237)
+.... .+. ....++.+...... ..+.+|+|||+|.+.. ...+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------------~~~~~ 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------------DAQQA 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH------------HHHHH
Confidence 53211 000 01223333323222 2346999999997721 11223
Q ss_pred HHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 000888 1061 FMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGY 1139 (1237)
Q Consensus 1061 LL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~Gy 1139 (1237)
|...++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.+++..+++..+.+.++. ++..++.|++.+.|
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 333333322 22344555656667778888897 678999999999999999998887765 55667888888755
Q ss_pred cHHHHHHHHH
Q 000888 1140 SGSDLKNLCV 1149 (1237)
Q Consensus 1140 SgaDL~~L~~ 1149 (1237)
+.+++.+.++
T Consensus 219 dlr~l~~~l~ 228 (337)
T PRK12402 219 DLRKAILTLQ 228 (337)
T ss_pred CHHHHHHHHH
Confidence 4444444333
No 132
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.4e-11 Score=151.41 Aligned_cols=183 Identities=18% Similarity=0.206 Sum_probs=130.6
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|++++|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 35899999999999999998863 2333558999999999999999999988642
Q ss_pred -------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHH
Q 000888 998 -------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1060 (1237)
Q Consensus 998 -------------fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~e 1060 (1237)
++.++.+.. ..-..++.+.+.+.. ....|+||||+|.|- ....+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 222322211 112334444444322 345699999999882 235566
Q ss_pred HHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 000888 1061 FMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGY 1139 (1237)
Q Consensus 1061 LL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~Gy 1139 (1237)
|+..++.. ...+++|.+|+.+..|.+.+++|+ ..+.|..++.++..++++.++.++++. ++..+..|++.+.|
T Consensus 138 LLK~LEEp----p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 138 LLKIVEEP----PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred HHHHHhcC----CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 77777653 456777778888899999999997 789999999999999999999887764 44456777777776
Q ss_pred cHHHHHHHHHH
Q 000888 1140 SGSDLKNLCVT 1150 (1237)
Q Consensus 1140 SgaDL~~L~~~ 1150 (1237)
+.+++.++++.
T Consensus 212 dlR~aln~Ldq 222 (584)
T PRK14952 212 SPRDTLSVLDQ 222 (584)
T ss_pred CHHHHHHHHHH
Confidence 44444444444
No 133
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.4e-12 Score=151.15 Aligned_cols=172 Identities=22% Similarity=0.334 Sum_probs=127.9
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc--------
Q 000888 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-------- 1006 (1237)
Q Consensus 935 ~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL-------- 1006 (1237)
.|-.|++++|+.+.+++.-.... ..... .-++|+||||+|||+|++.||+.++..|++++...+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~~kG--pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KKLKG--PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------ccCCC--cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 35689999999999998642221 11111 358999999999999999999999999999997554
Q ss_pred -ccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHH-----HHHHHhcCCcccCCccEEEEE
Q 000888 1007 -TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDTERILVLA 1080 (1237)
Q Consensus 1007 -~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~-----eLL~~ldgl~~~~~~~VlVIa 1080 (1237)
...|+|..+..+-+-...|....| |++|||||.|... .......++-.++. .|..+.-.+.. +-.+|++|+
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFia 471 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIA 471 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEe
Confidence 335888888888888888888776 7889999999533 22222223322221 12111111111 236899999
Q ss_pred ecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHH
Q 000888 1081 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL 1118 (1237)
Q Consensus 1081 TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L 1118 (1237)
|+|..+.++..++.|+ .+|++.-++.++..+|.+.++
T Consensus 472 TANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 472 TANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 9999999999999999 789999999999999998876
No 134
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.36 E-value=3.5e-11 Score=148.62 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=120.4
Q ss_pred hhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecc
Q 000888 935 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 1004 (1237)
Q Consensus 935 ~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~Id~s 1004 (1237)
+.|.+-++..+.|..++...+. + ..+...++|+|+||||||++++.+++++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4678888888888887764222 1 1232345799999999999999998876 2668899985
Q ss_pred ccccc----------ccc-------ccHHHHHHHHHHHH--hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHh
Q 000888 1005 SITSK----------WFG-------EGEKYVKAVFSLAS--KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1065 (1237)
Q Consensus 1005 eL~s~----------~~G-------~se~~I~~lF~~A~--k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~l 1065 (1237)
.+... ..+ .....+..+|.... .....||+|||||.|.... +. ++-.|+..
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-----QD----VLYnLFR~- 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-----QK----VLFTLFDW- 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH-----HH----HHHHHHHH-
Confidence 43211 101 12345566666542 2235699999999996421 22 22222222
Q ss_pred cCCcccCCccEEEEEecCC---CCCCcHHHHhhccc-cccCCCCCHHHHHHHHHHHHhhC-CCCChhhHHHHHHHcC
Q 000888 1066 DGLRTKDTERILVLAATNR---PFDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAKE-DLSPDVDFDAIANMTD 1137 (1237)
Q Consensus 1066 dgl~~~~~~~VlVIaTTN~---p~~Ld~aLlrRFd~-~I~v~~Pd~eeR~eILk~~L~~~-~l~~d~dl~~LA~~T~ 1137 (1237)
.. ....+++|||++|. +..|++.+++||.. .+.|++++.+++.+||+..+... .+.++..+..+|++..
T Consensus 896 ~~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 896 PT---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred hh---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 11 13467999999986 56777888888864 48899999999999999998753 2334555677777444
No 135
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2.7e-11 Score=149.68 Aligned_cols=184 Identities=20% Similarity=0.265 Sum_probs=135.0
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|++++|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 5899999999999999988753 2334678999999999999999999998542
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 998 ----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
++.++... ...-..++.+.+.+... ...|+||||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk 141 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLK 141 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHH
Confidence 33333221 11223456666555432 34699999999882 234566666
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 1142 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySga 1142 (1237)
.|+.. ...+++|.+|+.++.|.+.+++|+ ..+.|..++.++....+..++++.++. ++..+..|++.+.| +.+
T Consensus 142 ~LEep----p~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEEP----PPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHcC----CCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 356777778888899999999999 689999999999999999998888765 45667888999888 445
Q ss_pred HHHHHHHHHH
Q 000888 1143 DLKNLCVTAA 1152 (1237)
Q Consensus 1143 DL~~L~~~Aa 1152 (1237)
++.++++.+.
T Consensus 216 ~al~~Ldqli 225 (576)
T PRK14965 216 DSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 136
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.7e-11 Score=148.07 Aligned_cols=183 Identities=21% Similarity=0.292 Sum_probs=131.8
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 996 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 996 (1237)
..+|+++.|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 35799999999999999988752 233367999999999999999999999843
Q ss_pred ----------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 997 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 997 ----------~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
.++.++.+.. ..-..++.+...+... ...|++|||+|.|- ....+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHH
Confidence 2333332210 1223456666555443 34699999999882 12345666
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. +..+++|.+|+.+..|.+.+++|+ ..+.|..++.++...+++..+.+.+.. ++..+..++.++.| +.
T Consensus 141 KtLEEP----p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 141 KTLEEP----PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred HHHHhC----CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 666553 345777777788899999999999 589999999999999999998877653 45567888888887 44
Q ss_pred HHHHHHHHH
Q 000888 1142 SDLKNLCVT 1150 (1237)
Q Consensus 1142 aDL~~L~~~ 1150 (1237)
+++.++++.
T Consensus 215 R~AlnlLek 223 (605)
T PRK05896 215 RDGLSILDQ 223 (605)
T ss_pred HHHHHHHHH
Confidence 454455554
No 137
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.35 E-value=4.8e-11 Score=129.79 Aligned_cols=185 Identities=21% Similarity=0.255 Sum_probs=118.4
Q ss_pred ccchhcc--ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000888 932 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1006 (1237)
Q Consensus 932 vtf~dI~--Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL 1006 (1237)
.+|+++. +.....+.+++.+.. .....++|+||+|||||++|+++++++ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4555654 456677777766531 223589999999999999999999887 578888998776
Q ss_pred ccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC
Q 000888 1007 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1007 ~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1237)
.... ..++.... ...+|+|||+|.+.... .....+..+++. +.. ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~----~~~-----~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNR----VRE-----AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHH----HHH-----cCCeEEEECCCChH
Confidence 5321 22332222 34699999999873211 012222222222 111 12234444443443
Q ss_pred CC--c-HHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000888 1087 DL--D-EAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1087 ~L--d-~aLlrRFd--~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~ 1153 (1237)
.+ . +.+.+||. ..+.++.|+.+++..+++.++.+.++. ++..+..|++...| +.+++.++++.+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~ 207 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDR 207 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 33 2 77888874 678999999999999999887766554 44557778886544 78888888776553
No 138
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.34 E-value=7.9e-11 Score=128.91 Aligned_cols=178 Identities=21% Similarity=0.233 Sum_probs=114.6
Q ss_pred Cccchhcc--ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000888 931 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1005 (1237)
Q Consensus 931 ~vtf~dI~--Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~se 1005 (1237)
..+|+++. +.+.+...++++... ......++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 35677754 345555666655431 1223579999999999999999999976 67888888766
Q ss_pred cccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCcc-EEEEEecCC
Q 000888 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER-ILVLAATNR 1084 (1237)
Q Consensus 1006 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~-VlVIaTTN~ 1084 (1237)
+... + .......+|+|||+|.+- ...+..+..+++.+ . .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l~-----~~~~~~L~~~~~~~-------~--~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERLD-----DAQQIALFNLFNRV-------R--AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhcC-----chHHHHHHHHHHHH-------H--HcCCcEEEEeCCCC
Confidence 4321 1 112245799999999772 11222232333222 1 1223 344444433
Q ss_pred C--CCCcHHHHhhc--cccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 000888 1085 P--FDLDEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1150 (1237)
Q Consensus 1085 p--~~Ld~aLlrRF--d~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~ 1150 (1237)
+ ..+.+.+++|| ...+.+++|+.+++..+++.+....++. ++.-++.|++...| +.+++.++++.
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 3 24568888888 4688999999999999999887766655 44557778886665 67777777665
No 139
>PRK06893 DNA replication initiation factor; Validated
Probab=99.34 E-value=3e-11 Score=133.04 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=101.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1047 (1237)
..++|+||||||||+|++++|+++ +..+.++++... ......++...+ ...+|+||||+.+.+...+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~ 109 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNEEW 109 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCChHH
Confidence 368999999999999999999987 445555554321 111112233222 4579999999988543211
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCc---HHHHhhc--cccccCCCCCHHHHHHHHHHHHhhCC
Q 000888 1048 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---EAVIRRL--PRRLMVNLPDAPNRAKILQVILAKED 1122 (1237)
Q Consensus 1048 ~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld---~aLlrRF--d~~I~v~~Pd~eeR~eILk~~L~~~~ 1122 (1237)
...+..+++.+ .. .+..++|++++..|..++ +.+++|+ +..+.++.|+.++|.+|++..+...+
T Consensus 110 ---~~~l~~l~n~~-------~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 110 ---ELAIFDLFNRI-------KE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ---HHHHHHHHHHH-------HH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11222222222 11 123455566666666554 7899876 45788999999999999999887766
Q ss_pred CC-ChhhHHHHHHHcCCCcHHHHHHHHH
Q 000888 1123 LS-PDVDFDAIANMTDGYSGSDLKNLCV 1149 (1237)
Q Consensus 1123 l~-~d~dl~~LA~~T~GySgaDL~~L~~ 1149 (1237)
+. ++..+..|++..+| +.+.|..++.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~ 205 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALD 205 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 65 55667889998886 4455555544
No 140
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.34 E-value=1e-10 Score=129.37 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=115.1
Q ss_pred Cccchhcc-c-cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000888 931 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1005 (1237)
Q Consensus 931 ~vtf~dI~-G-le~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~se 1005 (1237)
..+|+++. | ...+...++..... .....++|+||+|+|||+|++++++++ +..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34677765 3 44455555554421 112479999999999999999999877 34455555543
Q ss_pred cccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCcc-EEEEEecCC
Q 000888 1006 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER-ILVLAATNR 1084 (1237)
Q Consensus 1006 L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~-VlVIaTTN~ 1084 (1237)
... ....+.+.... ..+|+||||+.+.+.. ...+.+..+++.+ ++ .++ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~---~~~~~lf~l~n~~---~e------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE---LWEMAIFDLYNRI---LE------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH---HHHHHHHHHHHHH---HH------cCCCeEEEeCCCC
Confidence 211 11122222222 3689999999884322 1122333333333 21 123 355555566
Q ss_pred CCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 000888 1085 PFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1150 (1237)
Q Consensus 1085 p~~---Ld~aLlrRFd--~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~ 1150 (1237)
|.. +.+.+++|+. .++.+..|+.+++.++++......++. ++.-++.|++..+| +.+.+..+++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 554 5799999995 678889999999999999877766655 55667889998887 55566666554
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=4.6e-11 Score=143.39 Aligned_cols=214 Identities=18% Similarity=0.263 Sum_probs=132.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1047 (1237)
+.++||||+|+|||+|++++++++ +..++++++..+...+.......-...|....+ ...+|+||||+.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh--
Confidence 579999999999999999999987 688888887665443222111111123433332 56799999999885322
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC---CCcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCC
Q 000888 1048 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKED 1122 (1237)
Q Consensus 1048 ~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~~I~v~~Pd~eeR~eILk~~L~~~~ 1122 (1237)
..++.+..+++.+.. ..+.+|++++..|. .+++.+++||. ..+.+..|+.++|..|++..++..+
T Consensus 219 -~~qeelf~l~N~l~~---------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 -ATQEEFFHTFNSLHT---------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred -hhHHHHHHHHHHHHH---------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 123333344444321 12345555555453 56789999995 6788899999999999999998876
Q ss_pred CC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHH
Q 000888 1123 LS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR-PIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHER 1200 (1237)
Q Consensus 1123 l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~-aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~ 1200 (1237)
+. ++..++.||....+ ..++|..++...+.. +..++ ...+++++++++++.+
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-------------------------~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-------------------------SHQLLYVDDIKALLHD 342 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-------------------------hCCCCCHHHHHHHHHH
Confidence 55 44556778887775 455555554444321 11111 1246888888888887
Q ss_pred hccCccc-cccchhhhHHHHHHhc
Q 000888 1201 VCASVSS-ESVNMSELLQWNELYG 1223 (1237)
Q Consensus 1201 v~pS~s~-e~~~~~~lvkW~diyG 1223 (1237)
+...... ......=...|.+.||
T Consensus 343 ~~~~~~~~~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 343 VLEAAESVRLTPSKIIRAVAQYYG 366 (445)
T ss_pred hhhcccCCCCCHHHHHHHHHHHhC
Confidence 6332111 1112223455667777
No 142
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.34 E-value=1.8e-11 Score=136.43 Aligned_cols=184 Identities=22% Similarity=0.294 Sum_probs=127.2
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------cEEEEecc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA------NFINISMS 1004 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~------~fi~Id~s 1004 (1237)
..+|+++.|++.+.+.|+..+.. +-..++|||||||||||+.|+++|.++.. .+...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999988752 11248999999999999999999999954 23344444
Q ss_pred ccccccccc-cHHHHHHHHHHHH-----hcCC-cEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEE
Q 000888 1005 SITSKWFGE-GEKYVKAVFSLAS-----KIAP-SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1077 (1237)
Q Consensus 1005 eL~s~~~G~-se~~I~~lF~~A~-----k~~P-sILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~Vl 1077 (1237)
+-.+..++. .-+...++...-. -.+| .||+|||.|.|. ...+ ..|...|+.. ...+.
T Consensus 98 derGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq-------~aLrr~mE~~----s~~tr 161 (346)
T KOG0989|consen 98 DERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQ-------AALRRTMEDF----SRTTR 161 (346)
T ss_pred ccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHH-------HHHHHHHhcc----ccceE
Confidence 443332211 1111111111111 1122 699999999984 2223 3344444442 35677
Q ss_pred EEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHH
Q 000888 1078 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLK 1145 (1237)
Q Consensus 1078 VIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~ 1145 (1237)
+|..||.++.|...+.+|+ ..+.|.....+.....|+.+..++++. ++..++.|+..++|--.+.+-
T Consensus 162 FiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 162 FILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAIT 229 (346)
T ss_pred EEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 7778999999999999999 568888888888999999999998887 445578889988885554443
No 143
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=6.6e-11 Score=143.41 Aligned_cols=185 Identities=22% Similarity=0.311 Sum_probs=130.3
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|+++.|++.+.+.|+..+.. .+..+.+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 35799999999999999988853 2233568999999999999999999998531
Q ss_pred -----------EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 998 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 998 -----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
++.++.+. ...-..++.+.+.+... .+.|++|||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 12222111 11123355555555433 35699999999873 22345666
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. +..+++|.+|+.++.+.+.+.+|+ ..+.|..++.++...+++.+++..++. ++..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666553 234555556667788888999998 578999999999999999999888765 44557788888887 45
Q ss_pred HHHHHHHHHHH
Q 000888 1142 SDLKNLCVTAA 1152 (1237)
Q Consensus 1142 aDL~~L~~~Aa 1152 (1237)
+++.++++.+.
T Consensus 215 r~al~~Ldkl~ 225 (486)
T PRK14953 215 RDAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHHH
Confidence 56666665554
No 144
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.32 E-value=4.8e-11 Score=136.71 Aligned_cols=176 Identities=19% Similarity=0.219 Sum_probs=116.6
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1010 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~ 1010 (1237)
..+++++.|.+.+++.++..+.. .+.+..+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 35899999999999999988752 122345777999999999999999999999999998876 11
Q ss_pred ccccHHHHHHHHHHHH-hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCc
Q 000888 1011 FGEGEKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1089 (1237)
Q Consensus 1011 ~G~se~~I~~lF~~A~-k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1089 (1237)
.......+........ ...+.||+|||+|.+.. .. ... .|...++.. ..++.+|++||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~-~~~---~L~~~le~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------AD-AQR---HLRSFMEAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HH-HHH---HHHHHHHhc----CCCceEEEEcCChhhch
Confidence 1111111211111111 12468999999997721 01 112 222223332 24567788999999999
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHHHhh-------CCCC-ChhhHHHHHHHcCC
Q 000888 1090 EAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS-PDVDFDAIANMTDG 1138 (1237)
Q Consensus 1090 ~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~-------~~l~-~d~dl~~LA~~T~G 1138 (1237)
+++++|| ..+.|+.|+.+++..+++.++.. .+.. .+..+..+++...|
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 9999999 57899999999998887654332 2332 22334666666554
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=6.2e-11 Score=145.71 Aligned_cols=185 Identities=21% Similarity=0.221 Sum_probs=133.4
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|+++.|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 35899999999999999998863 2233579999999999999999999998642
Q ss_pred -----------EEEEeccccccccccccHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 998 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 998 -----------fi~Id~seL~s~~~G~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
++.++... ...-..++.+.+.+. .....|++|||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 011234455544433 2345799999999882 23456676
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. +..+++|.+|+.+..|.+++++|+ ..+.|..++.++..++++..+...++. ++..+..|++.+.| +.
T Consensus 141 K~LEep----p~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEEP----PPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred HhhccC----CCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666652 356777777777888999999999 578999999999999999988877765 45567888888887 56
Q ss_pred HHHHHHHHHHH
Q 000888 1142 SDLKNLCVTAA 1152 (1237)
Q Consensus 1142 aDL~~L~~~Aa 1152 (1237)
+++.++++.++
T Consensus 215 R~alslLdkli 225 (563)
T PRK06647 215 RDAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 146
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=4.2e-11 Score=148.92 Aligned_cols=189 Identities=21% Similarity=0.304 Sum_probs=133.7
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 1003 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~I---d~---- 1003 (1237)
..+|+++.|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 36899999999999999998863 23346789999999999999999999985531100 00
Q ss_pred ------cccc--cccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCccc
Q 000888 1004 ------SSIT--SKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1071 (1237)
Q Consensus 1004 ------seL~--s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~ 1071 (1237)
.+++ ..........++.+.+.+... ...|++|||+|.|. ....+.|+..++..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP--- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP--- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC---
Confidence 0100 000001234467777766543 34699999999883 23456677666653
Q ss_pred CCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 000888 1072 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1150 (1237)
Q Consensus 1072 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~ 1150 (1237)
+..+++|.+|+.++.|.+.+++|+ .++.|..++.++...+++..+.+.++. ++..+..||+.+.|- .+++..++..
T Consensus 146 -P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs-lR~AlslLek 222 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS-LRDALSIAEQ 222 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 356777777788899999999999 589999999999999999988887765 344577888888874 4454444443
No 147
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.32 E-value=1.4e-11 Score=156.44 Aligned_cols=165 Identities=18% Similarity=0.304 Sum_probs=118.4
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1007 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~-------- 1007 (1237)
++.|++++|+.+.+++...... . ......++|+||||+|||++++.+|+.++.+|+++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 5899999999999887632211 1 11224699999999999999999999999999999876542
Q ss_pred -cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-----------ccCCcc
Q 000888 1008 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----------TKDTER 1075 (1237)
Q Consensus 1008 -s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-----------~~~~~~ 1075 (1237)
..|.|.....+.+.+..+.... .||+|||||.+..... .. ....|+..++.-. .-+-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CC-------HHHHHHHHhccccEEEEecccccccccCCc
Confidence 2355666666666666555434 4899999999853321 11 1223343343210 112368
Q ss_pred EEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh
Q 000888 1076 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA 1119 (1237)
Q Consensus 1076 VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~ 1119 (1237)
+++|||+|.. .|++++++|| ..|.+..++.++..+|++.++.
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9999999987 5999999999 5889999999999999988873
No 148
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.32 E-value=5.1e-12 Score=112.67 Aligned_cols=67 Identities=30% Similarity=0.519 Sum_probs=59.7
Q ss_pred eEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEe-CCCceEEcCeeecCCCeeEccCCCEEEEe
Q 000888 147 FTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESI-GSKGLQVNGKNLKKNTSCELRSGDEVVFG 216 (1237)
Q Consensus 147 ~tvGr~~~Cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~-s~nGt~VNg~~~~k~~~~~L~~gDeI~f~ 216 (1237)
|+|||+..||++|.++.||..||.|..... ..+||+|+ |.|||||||+++.++..+.|++||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999987644 35899998 58999999999999999999999999984
No 149
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.31 E-value=5.7e-11 Score=149.41 Aligned_cols=180 Identities=20% Similarity=0.346 Sum_probs=122.8
Q ss_pred ccchhccccHHHHH---HHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 932 VTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 932 vtf~dI~Gle~vK~---~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+|+|+.|++.+.. .|++.+.. ....++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 57899999998874 45555531 122489999999999999999999999999988886431
Q ss_pred ccccccHHHHHHHHHHHH-----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecC
Q 000888 1009 KWFGEGEKYVKAVFSLAS-----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~-----k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1237)
....++.++..+. .....||||||||.|- . ...+.|+..++ ...+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~-------~qQdaLL~~lE------~g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----K-------AQQDALLPWVE------NGTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----H-------HHHHHHHHHhc------CceEEEEEecC
Confidence 1112333333331 1245799999999872 1 11123333332 24566666553
Q ss_pred --CCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh-------hCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1084 --RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA-------KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1084 --~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~-------~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
....+++++++|+ ..+.|+.++.+++..+++..+. ...+. ++..++.|++...| ..+.+.++++.|+
T Consensus 146 enp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 146 ENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3357889999997 6789999999999999999886 22232 44557888888866 5666667766655
No 150
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=6.7e-11 Score=142.33 Aligned_cols=182 Identities=20% Similarity=0.273 Sum_probs=129.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|+|++|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 6899999999999999988853 2334679999999999999999999988432
Q ss_pred -----------EEEEeccccccccccccHHHHHHHHHHH----HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 998 -----------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 998 -----------fi~Id~seL~s~~~G~se~~I~~lF~~A----~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
++.++..... .-..++.+.+.+ ......||+|||+|.|. ....+.|+
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~LL 142 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHR------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSLL 142 (451)
T ss_pred HHHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHHH
Confidence 3333321110 112233332222 23456899999999883 22345666
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. ...+++|.+|+.+..|.+.+++|+ ..+.|..++.++...+++..+++.++. ++..+..|+..+.| +.
T Consensus 143 k~lEep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dl 216 (451)
T PRK06305 143 KTLEEP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SL 216 (451)
T ss_pred HHhhcC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666653 346677777788889999999999 678999999999999999988877754 45567888888877 44
Q ss_pred HHHHHHHHH
Q 000888 1142 SDLKNLCVT 1150 (1237)
Q Consensus 1142 aDL~~L~~~ 1150 (1237)
+.+.++++.
T Consensus 217 r~a~~~Lek 225 (451)
T PRK06305 217 RDAESLYDY 225 (451)
T ss_pred HHHHHHHHH
Confidence 444444443
No 151
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=7.7e-11 Score=145.60 Aligned_cols=190 Identities=22% Similarity=0.188 Sum_probs=134.5
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe---------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS--------- 1002 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id--------- 1002 (1237)
.+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+......
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 5899999999999999998753 234468999999999999999999999865321111
Q ss_pred ----c--------cccccc--cccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHH
Q 000888 1003 ----M--------SSITSK--WFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1064 (1237)
Q Consensus 1003 ----~--------seL~s~--~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ 1064 (1237)
| .+++.. -....-..++.+.+.++.. ...|+||||+|.|- ....+.|+..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKt 155 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKT 155 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHH
Confidence 0 011000 0011234566676666543 35799999999882 2335666666
Q ss_pred hcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHH
Q 000888 1065 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSD 1143 (1237)
Q Consensus 1065 ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaD 1143 (1237)
++.. ...+.+|.+|+.++.+.+.+++|+ ..+.|..++.++...+++..++++++. ++..++.|++.+.| +.++
T Consensus 156 LEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 6553 345666667777778888999999 679999999999999999999888765 44567788888887 5556
Q ss_pred HHHHHHHHH
Q 000888 1144 LKNLCVTAA 1152 (1237)
Q Consensus 1144 L~~L~~~Aa 1152 (1237)
+.++++.+.
T Consensus 230 al~~Ldkli 238 (598)
T PRK09111 230 GLSLLDQAI 238 (598)
T ss_pred HHHHHHHHH
Confidence 666665543
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.30 E-value=5.9e-11 Score=130.43 Aligned_cols=189 Identities=22% Similarity=0.334 Sum_probs=137.5
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~ 1007 (1237)
.+.++++.|++..|+.|.+.... |.. ..|.+++||+|++|||||++++++.+++ |..+|.+.-.++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 57899999999999999887653 333 3577899999999999999999999987 7778888765553
Q ss_pred cccccccHHHHHHHHHHHHhc-CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC
Q 000888 1008 SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~-~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1237)
. +..+++..+.. .+-|||+|++- +.. .+ .-...|...|+|.-...+.+|+|.||+|+.+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~----~d-----~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS--FEE----GD-----TEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC--CCC----Cc-----HHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 2 45566665533 45699999864 211 11 1224566667887767789999999999843
Q ss_pred C---------------CcH--------HHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCh-hhH----HHHHHHcCC
Q 000888 1087 D---------------LDE--------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDF----DAIANMTDG 1138 (1237)
Q Consensus 1087 ~---------------Ld~--------aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d-~dl----~~LA~~T~G 1138 (1237)
. +.+ ++..||...|.|..|+.++-.+|++.+++..++.-+ ..+ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2 221 334499999999999999999999999988877643 233 233555667
Q ss_pred CcHHHHHHHHH
Q 000888 1139 YSGSDLKNLCV 1149 (1237)
Q Consensus 1139 ySgaDL~~L~~ 1149 (1237)
.||+--.+.+.
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 88876655554
No 153
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=9.5e-11 Score=143.45 Aligned_cols=166 Identities=20% Similarity=0.324 Sum_probs=112.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1045 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r 1045 (1237)
+.++|||++|+|||+|+.||++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999987 578899998887655443322222223443323 46899999999885433
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC-C---CCCcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHh
Q 000888 1046 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-P---FDLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILA 1119 (1237)
Q Consensus 1046 ~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-p---~~Ld~aLlrRFd--~~I~v~~Pd~eeR~eILk~~L~ 1119 (1237)
. .++.+..+++.+. . ..+-+|| |++. | ..+++.+++||. .++.+..|+.+.|..||+..+.
T Consensus 394 ~---tqeeLF~l~N~l~-------e--~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S---TQEEFFHTFNTLH-------N--ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H---HHHHHHHHHHHHH-------h--cCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 1233334444432 1 1233444 5554 3 357889999995 4568899999999999999998
Q ss_pred hCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 000888 1120 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1151 (1237)
Q Consensus 1120 ~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~A 1151 (1237)
..++. ++.-++.|++...+ +.++|..++...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 87766 45557888888765 566666655543
No 154
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=3.2e-11 Score=144.72 Aligned_cols=167 Identities=17% Similarity=0.313 Sum_probs=110.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccH-HHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVIFVDEVDSMLGR 1044 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s~~~G~se-~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1044 (1237)
+.++||||+|+|||+|++++++++ +..++++++.++...+..... ..+. -|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 467888888776544322211 1111 233333346889999999988543
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHh
Q 000888 1045 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILA 1119 (1237)
Q Consensus 1045 r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~~I~v~~Pd~eeR~eILk~~L~ 1119 (1237)
.. .+..+..+++.+. + ....+||++...|.. +.+.+++||. ..+.+..|+.+.|..|++..+.
T Consensus 210 ~~---~q~elf~~~n~l~---~------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG---VQTELFHTFNELH---D------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH---HHHHHHHHHHHHH---H------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 21 1122223333332 1 233566655566654 4567888984 4678899999999999999987
Q ss_pred hCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 000888 1120 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 1151 (1237)
Q Consensus 1120 ~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~A 1151 (1237)
..++. ++..++.||+...| +.++|..++...
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 66554 45567888888876 566666665543
No 155
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.8e-12 Score=154.55 Aligned_cols=190 Identities=18% Similarity=0.230 Sum_probs=139.4
Q ss_pred eeeccCCCCCCCCCCCC---CCCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhc---
Q 000888 632 GVRFDKPIPDGVDLGGQ---CEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--- 705 (1237)
Q Consensus 632 gV~Fd~~~~~~~~l~~~---c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~--- 705 (1237)
||+.=+||+|||||-+- -|.+--||--.|.+-..=.||= -..-++-||+.+.+ +.|+||||||||..=.
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv--GAsRVRdLF~qAkk---~aP~IIFIDEiDAvGr~Rg 259 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV--GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRG 259 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCC--CcHHHHHHHHHhhc---cCCCeEEEehhhhcccccC
Confidence 78888899999994311 1222256656666666655654 55678999999999 9999999999997432
Q ss_pred -----CCcchhhhHHHHHhcCC-----CcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCC
Q 000888 706 -----GNSDSYSTFKSRLEKLP-----DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGK 775 (1237)
Q Consensus 706 -----~~~~~~~~lk~~L~~l~-----g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~ 775 (1237)
|+.+....+--.|-..+ ..|+||++||++|--|+| |.||||
T Consensus 260 ~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~A-------LlRpgR---------------------- 310 (596)
T COG0465 260 AGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPA-------LLRPGR---------------------- 310 (596)
T ss_pred CCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHh-------hcCCCC----------------------
Confidence 33333334444443332 379999999999977788 778888
Q ss_pred CchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHhhcCCCCccCcccccccccccchHHH
Q 000888 776 EIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESA 855 (1237)
Q Consensus 776 ~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lci~d~~ls~~~i 855 (1237)
|+++|.|.+||..+|.+|++.|+.. ..+..+++....+-.+.|++|+||..++.++++
T Consensus 311 ------------FDRqI~V~~PDi~gRe~IlkvH~~~----~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal------ 368 (596)
T COG0465 311 ------------FDRQILVELPDIKGREQILKVHAKN----KPLAEDVDLKKIARGTPGFSGADLANLLNEAAL------ 368 (596)
T ss_pred ------------cceeeecCCcchhhHHHHHHHHhhc----CCCCCcCCHHHHhhhCCCcccchHhhhHHHHHH------
Confidence 8899999999999999999988854 566677777777888999999999777665544
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccccccchhhhhHHHHH
Q 000888 856 EKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIF 893 (1237)
Q Consensus 856 e~iV~~A~s~~l~~~~~p~~~~~l~l~~ed~~~al~~l 893 (1237)
.+. +..+..+++.+|..+...+
T Consensus 369 ---------~aa-------r~n~~~i~~~~i~ea~drv 390 (596)
T COG0465 369 ---------LAA-------RRNKKEITMRDIEEAIDRV 390 (596)
T ss_pred ---------HHH-------HhcCeeEeccchHHHHHHH
Confidence 222 2245678888888877744
No 156
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=3.7e-10 Score=124.82 Aligned_cols=146 Identities=23% Similarity=0.322 Sum_probs=96.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1047 (1237)
..++|+||+|||||+|+.++++++ +..++++++.++.. .+..++.... ...+|+||||+.+.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 459999999999999999998876 66667776544321 2223333332 457999999998853321
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCC---cHHHHhhc--cccccCCCCCHHHHHHHHHHHHhhCC
Q 000888 1048 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL---DEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKED 1122 (1237)
Q Consensus 1048 ~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~L---d~aLlrRF--d~~I~v~~Pd~eeR~eILk~~L~~~~ 1122 (1237)
....+-.+++.+ .. .+.-+|+++...|..+ .+.+++|| ...+.++.|+.+++.+|++.++...+
T Consensus 111 --~~~~lf~l~n~~----~~-----~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 --DEVALFDFHNRA----RA-----AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred --HHHHHHHHHHHH----HH-----cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 122222232222 11 1222444344455544 68999997 45788899999999999999776655
Q ss_pred CC-ChhhHHHHHHHcCC
Q 000888 1123 LS-PDVDFDAIANMTDG 1138 (1237)
Q Consensus 1123 l~-~d~dl~~LA~~T~G 1138 (1237)
+. ++..++.|++.+.|
T Consensus 180 l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 180 LALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCCHHHHHHHHHhCCC
Confidence 54 55667888998876
No 157
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.6e-10 Score=135.62 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=129.1
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEE
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FIN 1000 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~----------fi~ 1000 (1237)
..+|++++|++.+.+.+...+.. .+.+.++|||||||+|||++|+++|+.+..+ +..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 36899999999999999988853 2234689999999999999999999988542 111
Q ss_pred EeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccE
Q 000888 1001 ISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 1076 (1237)
Q Consensus 1001 Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~V 1076 (1237)
+... .........++.+++.+... .+.||+|||+|.+. ....+.|+..++.. ....
T Consensus 80 ~~l~----~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~~----~~~~ 139 (367)
T PRK14970 80 FELD----AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEEP----PAHA 139 (367)
T ss_pred EEec----cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhCC----CCce
Confidence 1111 01112235566777766432 34699999999773 12345565555542 2345
Q ss_pred EEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 000888 1077 LVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1150 (1237)
Q Consensus 1077 lVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~ 1150 (1237)
++|.+++.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..++.|+..+.| +.+.+.+.++.
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred EEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 66666777888899999998 578999999999999999988887764 55667788887776 44444444443
No 158
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.4e-10 Score=140.93 Aligned_cols=186 Identities=20% Similarity=0.251 Sum_probs=133.5
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 996 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 996 (1237)
..+|++++|++.+++.|+..+.. .+-+..+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 35899999999999999988853 123356799999999999999999998832
Q ss_pred ----------cEEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 997 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 997 ----------~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
.++.++...- ..-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 1222322110 0123455555443222 23599999999882 23455666
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. +..+.+|.+|+.+..|.+.+++|+ ..++|..++.++....++..+..+++. ++..+..|++.+.| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 666653 345666666777899999999997 688999999999999999999888765 45667888888887 66
Q ss_pred HHHHHHHHHHHH
Q 000888 1142 SDLKNLCVTAAH 1153 (1237)
Q Consensus 1142 aDL~~L~~~Aa~ 1153 (1237)
+++.++++.|..
T Consensus 213 R~alnlLdqai~ 224 (535)
T PRK08451 213 RDTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHHHH
Confidence 677777766554
No 159
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.25 E-value=3.1e-10 Score=129.53 Aligned_cols=183 Identities=23% Similarity=0.303 Sum_probs=122.7
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 1006 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-----~~fi~Id~seL 1006 (1237)
.+|+++.|.+++++.|+..+.. + . ..++||+||||+|||++++++++++. .+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~----------~---~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE----------K---N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC----------C---C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 5899999999999999988752 1 1 13689999999999999999999972 34555544331
Q ss_pred ccccccccHHHHHH-HHHHHHh-----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEE
Q 000888 1007 TSKWFGEGEKYVKA-VFSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 1080 (1237)
Q Consensus 1007 ~s~~~G~se~~I~~-lF~~A~k-----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIa 1080 (1237)
. ....+.. +...+.. ..+.+|+|||+|.+.. ...+.|+..++... ....+|.
T Consensus 80 ~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------~~~~~L~~~le~~~----~~~~lIl 137 (319)
T PRK00440 80 R------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------DAQQALRRTMEMYS----QNTRFIL 137 (319)
T ss_pred c------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------HHHHHHHHHHhcCC----CCCeEEE
Confidence 1 1112222 2222222 2346999999998831 11223444444432 2345556
Q ss_pred ecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1081 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1081 TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
++|.+..+.+.+.+|+. .+.|..++.++...+++.++.+.++. ++..+..|++.+.|... .+.+.++.++
T Consensus 138 ~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r-~~~~~l~~~~ 208 (319)
T PRK00440 138 SCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMR-KAINALQAAA 208 (319)
T ss_pred EeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 67777778888999984 68999999999999999999887764 55678888988877444 4444444443
No 160
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.8e-10 Score=136.76 Aligned_cols=182 Identities=19% Similarity=0.219 Sum_probs=125.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|+++.|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 5799999999999999888753 2334569999999999999999999999652
Q ss_pred ------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHH
Q 000888 998 ------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMR 1055 (1237)
Q Consensus 998 ------------------fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~ 1055 (1237)
++.++... ...-..++.+.+.+.. ....|+||||+|.|. .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------~ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------I 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------H
Confidence 11221111 0112345555444432 234699999999883 1
Q ss_pred HHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHH
Q 000888 1056 KMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIAN 1134 (1237)
Q Consensus 1056 ~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~ 1134 (1237)
...+.|+..++.. ...+++|.+|+.+..+.+.+.+|+ ..+.|..++.++..++++..++..+.. ++..++.|+.
T Consensus 142 ~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2234555555542 234555566667788888999998 578999999999999999988877654 5566788888
Q ss_pred HcCCCcHHHHHHHHHH
Q 000888 1135 MTDGYSGSDLKNLCVT 1150 (1237)
Q Consensus 1135 ~T~GySgaDL~~L~~~ 1150 (1237)
.+.| +.+.+.++++.
T Consensus 217 ~s~g-~lr~a~~~L~k 231 (397)
T PRK14955 217 KAQG-SMRDAQSILDQ 231 (397)
T ss_pred HcCC-CHHHHHHHHHH
Confidence 8887 44444444443
No 161
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.25 E-value=3.7e-11 Score=144.55 Aligned_cols=193 Identities=23% Similarity=0.287 Sum_probs=143.6
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE--E-----EE-e
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF--I-----NI-S 1002 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f--i-----~I-d 1002 (1237)
..+|+|+.|++.+...|+..+.. .+-..+.||.||.|+|||++||.+|+.+++.- . .+ .
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 35799999999999999999864 23346899999999999999999999996541 1 00 0
Q ss_pred cccccc-cc---------ccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCC
Q 000888 1003 MSSITS-KW---------FGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1068 (1237)
Q Consensus 1003 ~seL~s-~~---------~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl 1068 (1237)
|-++.. .+ ....-..++.+.+.+.. ..+.|.+|||++.|. ...+|.||..++.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc-
Confidence 111100 00 01123445666665543 345799999999883 5667777776655
Q ss_pred cccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCC-hhhHHHHHHHcCCCcHHHHHHH
Q 000888 1069 RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGSDLKNL 1147 (1237)
Q Consensus 1069 ~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~-d~dl~~LA~~T~GySgaDL~~L 1147 (1237)
++.+|.+|.+|..+..++..+++|+ .++.|...+.++....|..++.++++.. +..+..||+..+| +.+|...|
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 4578999999999999999999999 6789999999999999999999998874 4457888898888 66677777
Q ss_pred HHHHHHH
Q 000888 1148 CVTAAHR 1154 (1237)
Q Consensus 1148 ~~~Aa~~ 1154 (1237)
++.|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 7666543
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2e-10 Score=142.80 Aligned_cols=181 Identities=22% Similarity=0.268 Sum_probs=131.2
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.+|+++.|++.+++.|+..+.. .+-..++||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 6799999999999999998863 1223579999999999999999999998652
Q ss_pred ------------EEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHH
Q 000888 998 ------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1061 (1237)
Q Consensus 998 ------------fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eL 1061 (1237)
++.++.. ....-..++.+.+.+... ...||||||+|.|- ....+.|
T Consensus 80 ~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naL 141 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNAL 141 (620)
T ss_pred HHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHH
Confidence 2222211 122345677777766542 34699999999882 2345667
Q ss_pred HHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCc
Q 000888 1062 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1140 (1237)
Q Consensus 1062 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GyS 1140 (1237)
+..++.- ...+++|++|+.+..+.+.+++|+ ..+.|..++.++....+..++.+.++. +...+..|++.+.|..
T Consensus 142 LK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l 216 (620)
T PRK14948 142 LKTLEEP----PPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL 216 (620)
T ss_pred HHHHhcC----CcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 7777652 356777777788888999999999 678899999999888888888776554 3455788888888754
Q ss_pred HHHHHHHHH
Q 000888 1141 GSDLKNLCV 1149 (1237)
Q Consensus 1141 gaDL~~L~~ 1149 (1237)
+++.++++
T Consensus 217 -r~A~~lLe 224 (620)
T PRK14948 217 -RDAESLLD 224 (620)
T ss_pred -HHHHHHHH
Confidence 44444443
No 163
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=3.5e-10 Score=140.41 Aligned_cols=183 Identities=21% Similarity=0.279 Sum_probs=127.8
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 998 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f------------ 998 (1237)
..+|++++|++.+++.|+..+.. .+....+||+||+|+|||++|+++|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 36899999999999999888753 12235689999999999999999999985321
Q ss_pred -------------EEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHH
Q 000888 999 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 1061 (1237)
Q Consensus 999 -------------i~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eL 1061 (1237)
+.++... ...-..++.+.+.+.. ....||||||+|.|. ...++.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 2222111 1112334454443332 235699999999882 2335566
Q ss_pred HHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCc
Q 000888 1062 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 1140 (1237)
Q Consensus 1062 L~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GyS 1140 (1237)
+..++.. ...+++|.+++..+.+.+.+++|+ ..+.|..++..+...+++..+...++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 6666653 234666666777777888899998 578999999999999999988877764 44557888888887 5
Q ss_pred HHHHHHHHHH
Q 000888 1141 GSDLKNLCVT 1150 (1237)
Q Consensus 1141 gaDL~~L~~~ 1150 (1237)
.+++.++++.
T Consensus 215 lr~al~~Lek 224 (585)
T PRK14950 215 MRDAENLLQQ 224 (585)
T ss_pred HHHHHHHHHH
Confidence 5566555554
No 164
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.22 E-value=1.6e-10 Score=134.16 Aligned_cols=244 Identities=15% Similarity=0.154 Sum_probs=136.8
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEec
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 1003 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-------~~fi~Id~ 1003 (1237)
...|.+|+|++++|..|...+.. ....+|||.|++|||||++|+++++.+. .+|. .++
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 35699999999999998876653 2336899999999999999999987762 2332 000
Q ss_pred -------cccccc-------------------cccccHHH------HHHHHHHHH---------hcCCcEEEEccchhhh
Q 000888 1004 -------SSITSK-------------------WFGEGEKY------VKAVFSLAS---------KIAPSVIFVDEVDSML 1042 (1237)
Q Consensus 1004 -------seL~s~-------------------~~G~se~~------I~~lF~~A~---------k~~PsILfIDEID~L~ 1042 (1237)
..+.+. ..+.++.. +...|.... +...++||||||+.+-
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 000000 01111111 111111111 1224799999999882
Q ss_pred cCCCCCchhHHHHHHHHHHHHHh--cCCcccCCccEEEEEecCCCC-CCcHHHHhhccccccCCCCC-HHHHHHHHHHHH
Q 000888 1043 GRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPD-APNRAKILQVIL 1118 (1237)
Q Consensus 1043 ~~r~~~~~~~a~~~il~eLL~~l--dgl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~v~~Pd-~eeR~eILk~~L 1118 (1237)
+..+..+..++.+-...+ ++.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.+.+|++...
T Consensus 158 -----~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 158 -----DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred -----HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 222222111111100111 232223356899999988765 69999999999999999997 699999998864
Q ss_pred hhCCCC----------ChhhHHHHH---HHcCC--CcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000888 1119 AKEDLS----------PDVDFDAIA---NMTDG--YSGSDLKNLCVTAAH---RPIKEILEKEKKERAAAMAEGKPAPAL 1180 (1237)
Q Consensus 1119 ~~~~l~----------~d~dl~~LA---~~T~G--ySgaDL~~L~~~Aa~---~aireil~~e~~~~~~a~~e~~~~~~~ 1180 (1237)
....-. .......|. +.... .+...+..+++.+.. ...|..+.....+++.|...++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR----- 307 (350)
T CHL00081 233 SFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGR----- 307 (350)
T ss_pred ccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCC-----
Confidence 311000 001122222 22222 222223223322221 2234344444455555655554
Q ss_pred CCCCCCccccHHHHHHHHHHhccCc
Q 000888 1181 SGCADIRPLNMDDFKYAHERVCASV 1205 (1237)
Q Consensus 1181 ~~~~~~r~Lt~eDF~~AL~~v~pS~ 1205 (1237)
..|+.+|++.+..-+.+..
T Consensus 308 ------~~V~pdDv~~~a~~vL~HR 326 (350)
T CHL00081 308 ------TEVTPKDIFKVITLCLRHR 326 (350)
T ss_pred ------CCCCHHHHHHHHHHHHHHh
Confidence 4799999999998775543
No 165
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.21 E-value=2e-10 Score=129.10 Aligned_cols=134 Identities=22% Similarity=0.305 Sum_probs=90.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cccccccccHHHH-H-------------------HHHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKYV-K-------------------AVFSL 1024 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~se------L~s~~~G~se~~I-~-------------------~lF~~ 1024 (1237)
..+||.||||||||++|+++|+.++.+++.+++.. +++.+.+.....+ . ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998753 3333332211110 0 01122
Q ss_pred HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------c-----cCCccEEEEEecCCC-----CC
Q 000888 1025 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------T-----KDTERILVLAATNRP-----FD 1087 (1237)
Q Consensus 1025 A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-------~-----~~~~~VlVIaTTN~p-----~~ 1087 (1237)
|.+ ...+|+||||+.+ + ..+.+.|+..++... . ....++.||+|+|.. ..
T Consensus 102 A~~-~g~~lllDEi~r~-----~-------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----K-------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHH-cCCEEEEcchhhC-----C-------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 222 3479999999976 2 122333333333211 0 012367899999975 36
Q ss_pred CcHHHHhhccccccCCCCCHHHHHHHHHHHH
Q 000888 1088 LDEAVIRRLPRRLMVNLPDAPNRAKILQVIL 1118 (1237)
Q Consensus 1088 Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L 1118 (1237)
+++++++|| ..+.++.|+.++..+|++...
T Consensus 169 l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 789999999 678999999999999998864
No 166
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=5.2e-10 Score=138.57 Aligned_cols=175 Identities=18% Similarity=0.227 Sum_probs=124.3
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 997 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------- 997 (1237)
..+|++++|++.+++.|+..+.. .+-+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 35899999999999999987753 2333579999999999999999999999662
Q ss_pred -------------------EEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHH
Q 000888 998 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAM 1054 (1237)
Q Consensus 998 -------------------fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~ 1054 (1237)
|+.++... ...-..++.+.+.+.. ....|++|||+|.|.
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------ 140 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------ 140 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------
Confidence 11111110 0112345555444422 234699999999882
Q ss_pred HHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHH
Q 000888 1055 RKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIA 1133 (1237)
Q Consensus 1055 ~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA 1133 (1237)
....+.|+..++.. ...+++|.+|+.+..|-+.+++|+ ..+.|..++.++...+++..+...++. ++..++.|+
T Consensus 141 ~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 141 TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12345666666653 234566666677788888999998 789999999999999999988877754 556678888
Q ss_pred HHcCCCcH
Q 000888 1134 NMTDGYSG 1141 (1237)
Q Consensus 1134 ~~T~GySg 1141 (1237)
.++.|..+
T Consensus 216 ~~s~Gdlr 223 (620)
T PRK14954 216 RKAQGSMR 223 (620)
T ss_pred HHhCCCHH
Confidence 88887444
No 167
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=5.7e-10 Score=134.36 Aligned_cols=169 Identities=17% Similarity=0.265 Sum_probs=112.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHH---HHHHHHHHHHhcCCcEEEEccchhhh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVIFVDEVDSML 1042 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s~~~G~se~---~I~~lF~~A~k~~PsILfIDEID~L~ 1042 (1237)
+.++|||++|+|||+|++|+++++ +..++++++.++...+...... .+.. |... -....+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~-~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNE-ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHH-hccCCEEEEecccccc
Confidence 469999999999999999999965 4678888887776544332211 1111 1111 1246799999999884
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC---CCcHHHHhhcc--ccccCCCCCHHHHHHHHHHH
Q 000888 1043 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVI 1117 (1237)
Q Consensus 1043 ~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~~I~v~~Pd~eeR~eILk~~ 1117 (1237)
++. ..++.+..+++.+. + .++.+||++...|. .+++.+++||. ..+.+..|+.++|.+|++..
T Consensus 220 ~k~---~~~e~lf~l~N~~~---~------~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFI---E------NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHH---H------cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 322 12233344444432 1 12334444333443 45789999995 56778899999999999999
Q ss_pred HhhCCC---CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000888 1118 LAKEDL---SPDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1118 L~~~~l---~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
++..++ .++..+..||..+.| +.+.|..+|..+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 987653 355667888998887 677888877766543
No 168
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.19 E-value=1.6e-10 Score=133.84 Aligned_cols=161 Identities=19% Similarity=0.304 Sum_probs=100.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINIS 1002 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-------g~~--fi~Id 1002 (1237)
..|.++.|++++++.|.-.+.. ....++||+|+||+|||++|++++..+ +.+ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 5689999999999988754431 112579999999999999999999998 332 22111
Q ss_pred cc---------ccc---------------ccccccc--HHHH---HHHHHH--HHhcCCcEEEEccchhhhcCCCCCchh
Q 000888 1003 MS---------SIT---------------SKWFGEG--EKYV---KAVFSL--ASKIAPSVIFVDEVDSMLGRRENPGEH 1051 (1237)
Q Consensus 1003 ~s---------eL~---------------s~~~G~s--e~~I---~~lF~~--A~k~~PsILfIDEID~L~~~r~~~~~~ 1051 (1237)
+. .+. ...+|.. +..+ ...|.. ..+...++||||||+.+-
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 00 000 0011110 0000 000110 001123699999999872
Q ss_pred HHHHHHHHHHHHHhc---------CCcccCCccEEEEEecCCCC-CCcHHHHhhccccccCCCCCH-HHHHHHHHHHH
Q 000888 1052 EAMRKMKNEFMVNWD---------GLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVIL 1118 (1237)
Q Consensus 1052 ~a~~~il~eLL~~ld---------gl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~v~~Pd~-eeR~eILk~~L 1118 (1237)
..+.+.|+..++ +.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++...
T Consensus 142 ---~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 ---DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ---HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 223333333332 22223356899999999754 689999999999999988866 99999998854
No 169
>PRK06620 hypothetical protein; Validated
Probab=99.19 E-value=4.8e-10 Score=122.49 Aligned_cols=143 Identities=15% Similarity=0.225 Sum_probs=96.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1050 (1237)
+.++||||||+|||+|++++++..+..++. .... . ...+ ....+|+|||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~----~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------N----EEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------c----hhHH-----hcCCEEEEeccccch--------
Confidence 579999999999999999999988753322 1000 0 0111 133799999999551
Q ss_pred hHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCC--CcHHHHhhccc--cccCCCCCHHHHHHHHHHHHhhCCCC-C
Q 000888 1051 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD--LDEAVIRRLPR--RLMVNLPDAPNRAKILQVILAKEDLS-P 1125 (1237)
Q Consensus 1051 ~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~--Ld~aLlrRFd~--~I~v~~Pd~eeR~eILk~~L~~~~l~-~ 1125 (1237)
...+..++|.+. +.++.+||+++..|.. + +++++|+.. ++.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 123334444332 2345677777665543 5 789999953 68889999999999999988766654 5
Q ss_pred hhhHHHHHHHcCCCcHHHHHHHHHH
Q 000888 1126 DVDFDAIANMTDGYSGSDLKNLCVT 1150 (1237)
Q Consensus 1126 d~dl~~LA~~T~GySgaDL~~L~~~ 1150 (1237)
+..++.|++...+ +.+.+.++++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHH
Confidence 5667888888876 55566555554
No 170
>PRK05642 DNA replication initiation factor; Validated
Probab=99.19 E-value=5.3e-10 Score=123.71 Aligned_cols=157 Identities=20% Similarity=0.247 Sum_probs=105.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 1047 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~ 1047 (1237)
..++|+||+|+|||+|++++++++ +..+++++..++... ...+.+.... ..+|+|||++.+.+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 579999999999999999999875 677888887766532 1122222222 36899999997743321
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC---CCcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCC
Q 000888 1048 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKED 1122 (1237)
Q Consensus 1048 ~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~~I~v~~Pd~eeR~eILk~~L~~~~ 1122 (1237)
..+.+-.+++.+. +.++.+||+++..|. .+.+.+++||. ..+.+..|+.++|.++++..+...+
T Consensus 115 --~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 --WEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --HHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1223333333331 224567777666553 33688999994 5677799999999999997666555
Q ss_pred CC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 000888 1123 LS-PDVDFDAIANMTDGYSGSDLKNLCVT 1150 (1237)
Q Consensus 1123 l~-~d~dl~~LA~~T~GySgaDL~~L~~~ 1150 (1237)
+. ++..++.|++..++ +.+.+..+++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 211 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLER 211 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 53 45667888888876 55566555543
No 171
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.15 E-value=1.6e-09 Score=135.05 Aligned_cols=230 Identities=19% Similarity=0.253 Sum_probs=132.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1001 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~I 1001 (1237)
.+|+++.|.+...+.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 5789999999888877665532 112479999999999999999998765 3578999
Q ss_pred eccccc-------cccccccHHH----HHHHHHH----------HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHH
Q 000888 1002 SMSSIT-------SKWFGEGEKY----VKAVFSL----------ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1060 (1237)
Q Consensus 1002 d~seL~-------s~~~G~se~~----I~~lF~~----------A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~e 1060 (1237)
++..+. ..+++..... .+..+.. ......++|||||++.| +...+..+..++++
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLED 291 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHhh
Confidence 987652 1112211110 0001100 11223579999999987 22222222222221
Q ss_pred HHHHh-----c-----------C-CcccCCccEEEEE-ecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCC
Q 000888 1061 FMVNW-----D-----------G-LRTKDTERILVLA-ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED 1122 (1237)
Q Consensus 1061 LL~~l-----d-----------g-l~~~~~~~VlVIa-TTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~ 1122 (1237)
-...+ + . +.......+++|+ ||+.+..+++++++||. .+.|++++.+++..|++..+.+.+
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKIN 370 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcC
Confidence 00000 0 0 0001123455555 55678899999999995 678888999999999999988765
Q ss_pred CC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000888 1123 LS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1201 (1237)
Q Consensus 1123 l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v 1201 (1237)
+. ++..++.|++.+. .++...+++..+...+..+.. .+ .+ ......|+.+|+++++..-
T Consensus 371 v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~--------~~-~~---------~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 371 VHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAA--------EA-GK---------ENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred CCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHH--------Hh-cc---------CCCCeeECHHHHHHHhCCC
Confidence 43 3444556666553 333333444444322211110 00 00 0122579999999998754
No 172
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.2e-09 Score=133.55 Aligned_cols=181 Identities=20% Similarity=0.276 Sum_probs=130.5
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 996 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--------------- 996 (1237)
.+|+++.|++.+++.|...+.. .+.+..+|||||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 6899999999999999988853 233356999999999999999999998853
Q ss_pred ----------cEEEEeccccccccccccHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 997 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 997 ----------~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
+++.+++... .....++.+...+...+ ..|++|||+|.|. ....+.|+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLL 142 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFL 142 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHH
Confidence 3333333211 11344666665554332 4599999999882 23455666
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcH
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySg 1141 (1237)
..++.. ...+++|.+|+.+..|-+.+++|+ ..+.|..++.++...+++..+.++++. +...+..|+..+.| +.
T Consensus 143 K~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666653 345666667777788999999999 679999999999999999999888876 34457888888877 44
Q ss_pred HHHHHHHH
Q 000888 1142 SDLKNLCV 1149 (1237)
Q Consensus 1142 aDL~~L~~ 1149 (1237)
+++.++++
T Consensus 217 r~al~~Le 224 (614)
T PRK14971 217 RDALSIFD 224 (614)
T ss_pred HHHHHHHH
Confidence 44444443
No 173
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.12 E-value=2.3e-10 Score=108.62 Aligned_cols=96 Identities=22% Similarity=0.375 Sum_probs=79.8
Q ss_pred hhhcccCC--CCcceeeeC-CeeEEcCCCCc-ceeecCCCCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeecCCC
Q 000888 128 CRLLSQSG--QNSNVPICA-SIFTVGSSRQC-NFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNT 203 (1237)
Q Consensus 128 grL~s~~~--~~~~l~i~~-~~~tvGr~~~C-d~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~~ 203 (1237)
+.|.++.. ..+.+.|.. ..|+|||+..| |+.|.+..+|..||.|..... ....++++.|.|||+|||+++.++.
T Consensus 2 ~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~--~~~~~~~~~s~~g~~vn~~~~~~~~ 79 (102)
T cd00060 2 PRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGD--GGVVLIDLGSTNGTFVNGQRVSPGE 79 (102)
T ss_pred eEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCC--CCEEEEECCCCCCeEECCEECCCCC
Confidence 44555544 577888998 99999999999 999999999999999997643 2346888888899999999999999
Q ss_pred eeEccCCCEEEEeecCCeeEEEE
Q 000888 204 SCELRSGDEVVFGSLGNHAYIFQ 226 (1237)
Q Consensus 204 ~~~L~~gDeI~f~~~~~~ayiF~ 226 (1237)
.+.|.+||.|.|+. +.+.|.|+
T Consensus 80 ~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 80 PVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred cEECCCCCEEEECC-eEEEEEEe
Confidence 99999999999987 44455554
No 174
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.11 E-value=1e-09 Score=108.27 Aligned_cols=121 Identities=41% Similarity=0.657 Sum_probs=80.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHH---HHHHHHHHHhcCCcEEEEccchhhhcC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVIFVDEVDSMLGR 1044 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~se~~---I~~lF~~A~k~~PsILfIDEID~L~~~ 1044 (1237)
.+++|+||||+|||++++++++.+ +.+++.+++.+............ ....+..+....+.+|+|||++.+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-- 97 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS-- 97 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh--
Confidence 579999999999999999999999 89999999877644322221111 1222334445568999999999761
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCcc--cCCccEEEEEecCCCC--CCcHHHHhhccccccCC
Q 000888 1045 RENPGEHEAMRKMKNEFMVNWDGLRT--KDTERILVLAATNRPF--DLDEAVIRRLPRRLMVN 1103 (1237)
Q Consensus 1045 r~~~~~~~a~~~il~eLL~~ldgl~~--~~~~~VlVIaTTN~p~--~Ld~aLlrRFd~~I~v~ 1103 (1237)
. .. ...++..+..... ....++.+|++++... .+++.+.+||+.++.++
T Consensus 98 ---~---~~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 ---R---GA----QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ---H---HH----HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 0 11 1222222222211 1135688888888776 78889999998766664
No 175
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.9e-09 Score=124.98 Aligned_cols=199 Identities=20% Similarity=0.303 Sum_probs=127.7
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecccccccc
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKW 1010 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-----~fi~Id~seL~s~~ 1010 (1237)
.+.+-++..+++...+...+. + ..| .++++||+||||||.+++.+++++.- .+++++|..+.+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--ERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--CCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 377788888888777653222 1 233 46999999999999999999999833 38999996652211
Q ss_pred ---------------cccc-HHHHHHHHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCC
Q 000888 1011 ---------------FGEG-EKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1073 (1237)
Q Consensus 1011 ---------------~G~s-e~~I~~lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~ 1073 (1237)
.|.+ ......+++...+ ...-||++||+|.|..+.. .++-.|+..... ..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~----~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGE----NK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccc----cc
Confidence 1111 2233444444433 3456888999999975432 333444333222 25
Q ss_pred ccEEEEEecCCC---CCCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhhC---CCCChhhHHHHH---HHcCCCcHHH
Q 000888 1074 ERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIA---NMTDGYSGSD 1143 (1237)
Q Consensus 1074 ~~VlVIaTTN~p---~~Ld~aLlrRFd-~~I~v~~Pd~eeR~eILk~~L~~~---~l~~d~dl~~LA---~~T~GySgaD 1143 (1237)
.++.+|+.+|.. +.+++.+.++|. ..|.|++++.+|...|++...... +..++.-+..+| ....| ..+-
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 788999999986 478889999773 458999999999999999987642 222233334444 33344 3333
Q ss_pred HHHHHHHHHHHHHHH
Q 000888 1144 LKNLCVTAAHRPIKE 1158 (1237)
Q Consensus 1144 L~~L~~~Aa~~aire 1158 (1237)
-..+|+.|+..|.++
T Consensus 234 aidilr~A~eiAe~~ 248 (366)
T COG1474 234 AIDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHHhh
Confidence 346677777665443
No 176
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.09 E-value=5.1e-09 Score=123.19 Aligned_cols=169 Identities=19% Similarity=0.333 Sum_probs=116.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGR 1044 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~ 1044 (1237)
.+.++||||.|.|||+|++|++++. +..+++++...++..++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3569999999999999999999988 34577777666655444333333333455555 5579999999998655
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCC---CcHHHHhhccc--cccCCCCCHHHHHHHHHHHHh
Q 000888 1045 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLPR--RLMVNLPDAPNRAKILQVILA 1119 (1237)
Q Consensus 1045 r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~--~I~v~~Pd~eeR~eILk~~L~ 1119 (1237)
... ++..-.++|.+. ..++-+|+.+-..|.. +.+.+++||.. ++.+..|+.+.|..||+....
T Consensus 191 ~~~---qeefFh~FN~l~---------~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ERT---QEEFFHTFNALL---------ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hhH---HHHHHHHHHHHH---------hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 432 445555666553 1234566655555654 55899999964 677789999999999999887
Q ss_pred hCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000888 1120 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1120 ~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~ 1153 (1237)
..++. ++.-+..||+.... +.++|..++.....
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~ 292 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDA 292 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHH
Confidence 77766 45556777877664 66676665554443
No 177
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.09 E-value=9.5e-10 Score=120.56 Aligned_cols=167 Identities=20% Similarity=0.371 Sum_probs=103.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHH-HHHHHHHHHHhcCCcEEEEccchhhhcC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVIFVDEVDSMLGR 1044 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s~~~G~se~-~I~~lF~~A~k~~PsILfIDEID~L~~~ 1044 (1237)
..++||||+|+|||+|.+|+++++ +..++++++.++...+...... .+.. |....+ ...+|+||+|+.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCc
Confidence 469999999999999999999876 5778899887765443222111 1111 222222 4579999999998422
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC---CCcHHHHhhccc--cccCCCCCHHHHHHHHHHHHh
Q 000888 1045 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLPR--RLMVNLPDAPNRAKILQVILA 1119 (1237)
Q Consensus 1045 r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd~--~I~v~~Pd~eeR~eILk~~L~ 1119 (1237)
. ..++.+-.+++.+. ..++.+||++...|. .+++.+++||.. .+.+..|+.+.|.+|++..+.
T Consensus 113 ~---~~q~~lf~l~n~~~---------~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 113 Q---RTQEELFHLFNRLI---------ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp H---HHHHHHHHHHHHHH---------HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHH---------hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 1 11233334444332 123456666655554 456889999854 678899999999999999998
Q ss_pred hCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1120 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1120 ~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
..++. ++.-++.|++...+ +.++|..++..-.
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 88776 44556778888765 6677776665443
No 178
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.07 E-value=3.1e-09 Score=123.36 Aligned_cols=156 Identities=17% Similarity=0.301 Sum_probs=98.7
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE-------
Q 000888 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------- 999 (1237)
Q Consensus 934 f~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-------g~~fi------- 999 (1237)
|..|+|++++|..|.-.+.. ....++||.|++|+|||+|+++++..+ +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred ccccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 77899999999887655532 113589999999999999999999877 22221
Q ss_pred ------EE--ec-------------cccc-----cccccccH--HHH--------HHHHHHHHhcCCcEEEEccchhhhc
Q 000888 1000 ------NI--SM-------------SSIT-----SKWFGEGE--KYV--------KAVFSLASKIAPSVIFVDEVDSMLG 1043 (1237)
Q Consensus 1000 ------~I--d~-------------seL~-----s~~~G~se--~~I--------~~lF~~A~k~~PsILfIDEID~L~~ 1043 (1237)
+. .. .++- ...+|... ..+ ..++. +....+||||||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhCC-
Confidence 00 00 0110 01222210 000 00111 1234799999999872
Q ss_pred CCCCCchhHHHHHHHHHHHHHhc---------CCcccCCccEEEEEecCCCC-CCcHHHHhhccccccCCCCCH-HHHHH
Q 000888 1044 RRENPGEHEAMRKMKNEFMVNWD---------GLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAK 1112 (1237)
Q Consensus 1044 ~r~~~~~~~a~~~il~eLL~~ld---------gl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~v~~Pd~-eeR~e 1112 (1237)
..+...|+..++ +.....+.++++|+|.|..+ .+.++++.||...+.++.|.. ++|.+
T Consensus 145 -----------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 145 -----------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred -----------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence 122223333332 22222346789999998654 799999999999999988875 89999
Q ss_pred HHHHHH
Q 000888 1113 ILQVIL 1118 (1237)
Q Consensus 1113 ILk~~L 1118 (1237)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998854
No 179
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=5.5e-09 Score=120.23 Aligned_cols=176 Identities=17% Similarity=0.265 Sum_probs=119.7
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEec
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------NFINISM 1003 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--------~fi~Id~ 1003 (1237)
++|+++.|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-+ .++.+..
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 3689999999999999888752 233357899999999999999999998733 2233322
Q ss_pred cccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEE
Q 000888 1004 SSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 1079 (1237)
Q Consensus 1004 seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVI 1079 (1237)
. .+.. -.-..++.+.+.+.. ....|++||++|.|- ....|.|+..++.. +..+++|
T Consensus 68 ~--~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEep----p~~t~~i 127 (313)
T PRK05564 68 I--NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEEP----PKGVFII 127 (313)
T ss_pred c--cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcCC----CCCeEEE
Confidence 1 0111 112335555554432 345699999999882 23456677666653 3456666
Q ss_pred EecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHH
Q 000888 1080 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1144 (1237)
Q Consensus 1080 aTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL 1144 (1237)
.+|+.++.+-+.+++|+ ..+.|..|+.++...++..... . .+...+..++..+.|-.+..+
T Consensus 128 l~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~--~-~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 128 LLCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYN--D-IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred EEeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhc--C-CCHHHHHHHHHHcCCCHHHHH
Confidence 66678899999999999 6899999999998888876543 2 233445667777777554433
No 180
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=5.3e-09 Score=122.21 Aligned_cols=188 Identities=18% Similarity=0.143 Sum_probs=124.5
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEE-e-
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINI-S- 1002 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------fi~I-d- 1002 (1237)
..++++.|++++++.|...+.. .+-+..+||+||+|+|||++|+++|+.+.+. .... .
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 5789999999999999998863 2334679999999999999999999998541 1000 0
Q ss_pred --c-----------cccc--cccccc---------cHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCchhHHH
Q 000888 1003 --M-----------SSIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAM 1054 (1237)
Q Consensus 1003 --~-----------seL~--s~~~G~---------se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~~~~a~ 1054 (1237)
| +++. ....+. .-..++.+..... .....|++|||+|.|-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 1 1110 000000 1123444333322 2345799999999882
Q ss_pred HHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHH
Q 000888 1055 RKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIAN 1134 (1237)
Q Consensus 1055 ~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~ 1134 (1237)
....+.|+..++.. ..+.++|..|+.+..+.+.+++|+ ..+.|++|+.++..++++....... .++..+..+++
T Consensus 155 ~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 155 RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 23445677777653 244566666778888899999999 7999999999999999988543323 22444677888
Q ss_pred HcCCCcHHHHHHHHHHH
Q 000888 1135 MTDGYSGSDLKNLCVTA 1151 (1237)
Q Consensus 1135 ~T~GySgaDL~~L~~~A 1151 (1237)
.+.|.....+ +++...
T Consensus 229 ~s~G~pr~Al-~ll~~~ 244 (351)
T PRK09112 229 RSKGSVRKAL-LLLNYG 244 (351)
T ss_pred HcCCCHHHHH-HHHhcC
Confidence 8888655554 444433
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.04 E-value=7.2e-10 Score=127.21 Aligned_cols=142 Identities=17% Similarity=0.245 Sum_probs=95.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc--cccccH----------HHHHHHHHHHHhcCCcEEEEccc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVIFVDEV 1038 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~--~~G~se----------~~I~~lF~~A~k~~PsILfIDEI 1038 (1237)
++|||.||||||||++|+++|..++.+++++++...+.. ++|... ......+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999988654332 444321 111223444444 4588999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHH--HHHHhcCCc-ccCCccEEEEEecCCCC------------CCcHHHHhhccccccCC
Q 000888 1039 DSMLGRRENPGEHEAMRKMKNE--FMVNWDGLR-TKDTERILVLAATNRPF------------DLDEAVIRRLPRRLMVN 1103 (1237)
Q Consensus 1039 D~L~~~r~~~~~~~a~~~il~e--LL~~ldgl~-~~~~~~VlVIaTTN~p~------------~Ld~aLlrRFd~~I~v~ 1103 (1237)
|.. .+.....+..+++. .+...+... ......+.||||+|... .++++++.||-.++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 966 22222222333221 000011111 11234789999999843 57899999997778999
Q ss_pred CCCHHHHHHHHHHHH
Q 000888 1104 LPDAPNRAKILQVIL 1118 (1237)
Q Consensus 1104 ~Pd~eeR~eILk~~L 1118 (1237)
.|+.++-.+|+....
T Consensus 219 Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 219 YLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999998764
No 182
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.03 E-value=1.7e-09 Score=135.37 Aligned_cols=231 Identities=21% Similarity=0.276 Sum_probs=135.7
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------------------
Q 000888 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------- 994 (1237)
Q Consensus 934 f~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL------------------- 994 (1237)
|.+|+|++.++..|.-....+ ...+|||.|++|||||++|++|++.+
T Consensus 3 f~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 678999999998886655421 12579999999999999999999988
Q ss_pred ----------------CCcEEEEecccccccccccc--HHHHH--------HHHHHHHhcCCcEEEEccchhhhcCCCCC
Q 000888 995 ----------------GANFINISMSSITSKWFGEG--EKYVK--------AVFSLASKIAPSVIFVDEVDSMLGRRENP 1048 (1237)
Q Consensus 995 ----------------g~~fi~Id~seL~s~~~G~s--e~~I~--------~lF~~A~k~~PsILfIDEID~L~~~r~~~ 1048 (1237)
..+|+.+.+.......+|.. +..+. .++..| ..+|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC------
Confidence 25677666554333334432 11110 011111 23699999999882
Q ss_pred chhHHHHHHHHHHHHHhcC---------CcccCCccEEEEEecCCC-CCCcHHHHhhccccccCCCC-CHHHHHHHHHHH
Q 000888 1049 GEHEAMRKMKNEFMVNWDG---------LRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVI 1117 (1237)
Q Consensus 1049 ~~~~a~~~il~eLL~~ldg---------l~~~~~~~VlVIaTTN~p-~~Ld~aLlrRFd~~I~v~~P-d~eeR~eILk~~ 1117 (1237)
..+.+.|+..++. .......+++||+|+|.. ..|.++++.||+..|.++.+ +.+++.++++..
T Consensus 140 ------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 140 ------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 2333444444432 112223678999999864 46889999999988888766 468888888765
Q ss_pred HhhCCCC--------Ch--hhHHHHH--H-HcC--CCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCCCC
Q 000888 1118 LAKEDLS--------PD--VDFDAIA--N-MTD--GYSGSDLKNLCVTAAHR---PIKEILEKEKKERAAAMAEGKPAPA 1179 (1237)
Q Consensus 1118 L~~~~l~--------~d--~dl~~LA--~-~T~--GySgaDL~~L~~~Aa~~---aireil~~e~~~~~~a~~e~~~~~~ 1179 (1237)
+....-. .+ .....+. + +.. -.+...+..|+..+... ..|..+...+..++.+...++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr---- 289 (633)
T TIGR02442 214 LAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGR---- 289 (633)
T ss_pred HhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC----
Confidence 5321100 00 0001111 1 111 12333344444433322 123333333344444444443
Q ss_pred CCCCCCCccccHHHHHHHHHHhccC
Q 000888 1180 LSGCADIRPLNMDDFKYAHERVCAS 1204 (1237)
Q Consensus 1180 ~~~~~~~r~Lt~eDF~~AL~~v~pS 1204 (1237)
..|+.+|+..|+.-+.+.
T Consensus 290 -------~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 290 -------RRVTAEDVREAAELVLPH 307 (633)
T ss_pred -------CcCCHHHHHHHHHHHhhh
Confidence 579999999999987543
No 183
>PRK09087 hypothetical protein; Validated
Probab=99.02 E-value=5.8e-09 Score=114.99 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=110.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1050 (1237)
..++|+||+|+|||+|++++++..+..++.. ..+.. .++..... .+|+|||++.+. ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 3599999999999999999998876553332 22111 11111111 589999999762 12
Q ss_pred hHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCCCC-
Q 000888 1051 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS- 1124 (1237)
Q Consensus 1051 ~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~~I~v~~Pd~eeR~eILk~~L~~~~l~- 1124 (1237)
++.+..+++.+. +.++.+||+++..|.. ..+.+++||. ..+.+..|+.+.|.+|++..++..++.
T Consensus 103 ~~~lf~l~n~~~---------~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVR---------QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHH---------hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 344444444442 1245566666655532 3578999985 678889999999999999999887665
Q ss_pred ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000888 1125 PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1201 (1237)
Q Consensus 1125 ~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v 1201 (1237)
++..++.|++...+ +.+.+..++......+.. ..+++|...++++++.+
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~---------------------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE---------------------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH---------------------------hCCCCCHHHHHHHHHhh
Confidence 55667888888775 333333332222111110 22679999999998875
No 184
>PHA02244 ATPase-like protein
Probab=99.00 E-value=3.4e-09 Score=123.04 Aligned_cols=134 Identities=21% Similarity=0.310 Sum_probs=81.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc----cccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 1046 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~se----L~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~ 1046 (1237)
..|||+||||||||++|+++|+.++.+|+.++.-. +.+ +..........-|..|.+ ...+||||||+.+-
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~---- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASI---- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCC----
Confidence 36999999999999999999999999999987421 111 111111111112333333 45899999999762
Q ss_pred CCchhHHHHHHHHH-HHHHhcCCcccCCccEEEEEecCCC-----------CCCcHHHHhhccccccCCCCCHHHHHHHH
Q 000888 1047 NPGEHEAMRKMKNE-FMVNWDGLRTKDTERILVLAATNRP-----------FDLDEAVIRRLPRRLMVNLPDAPNRAKIL 1114 (1237)
Q Consensus 1047 ~~~~~~a~~~il~e-LL~~ldgl~~~~~~~VlVIaTTN~p-----------~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL 1114 (1237)
+.....+..++.. ++..+.+ ......++.+|+|+|.+ ..|++++++|| ..|+++.|+ +....|.
T Consensus 194 -p~vq~~L~~lLd~r~l~l~g~-~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 194 -PEALIIINSAIANKFFDFADE-RVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDE-KIEHLIS 269 (383)
T ss_pred -HHHHHHHHHHhccCeEEecCc-EEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCc-HHHHHHh
Confidence 1112222222211 1111111 11123578999999973 57899999999 578999987 3333444
No 185
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.00 E-value=4.1e-09 Score=113.55 Aligned_cols=184 Identities=23% Similarity=0.294 Sum_probs=124.7
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C----CcEEEEecccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSSI 1006 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-g----~~fi~Id~seL 1006 (1237)
..+.||+|.++..+.|.-+... + +. .+++|.||||+|||+-+.++|+++ | --+..++.++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-----------g-nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-----------G-NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-----------C-CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 4688999999999998866542 1 23 489999999999999999999998 3 23556666553
Q ss_pred ccccccccHHHHHHHHHHHHhcCC---cEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecC
Q 000888 1007 TSKWFGEGEKYVKAVFSLASKIAP---SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 1083 (1237)
Q Consensus 1007 ~s~~~G~se~~I~~lF~~A~k~~P---sILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN 1083 (1237)
.+ +..-...++..-..--..+| .||++||+|++ ..+.++++++.++-.- ...-+..++|
T Consensus 90 RG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFalaCN 151 (333)
T KOG0991|consen 90 RG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALACN 151 (333)
T ss_pred cc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhhhc
Confidence 22 11111222222221122233 49999999999 4567788888876541 2234455788
Q ss_pred CCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHH
Q 000888 1084 RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 1148 (1237)
Q Consensus 1084 ~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~ 1148 (1237)
..+.+-+.+.+|+ ..+.+...+..+...-+....+.+++. .+..++.+.--.+|-....|.+|-
T Consensus 152 ~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQ 216 (333)
T KOG0991|consen 152 QSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQ 216 (333)
T ss_pred chhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHH
Confidence 8888889999998 567777777777766666666666655 445577777777777666666653
No 186
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.00 E-value=1.6e-09 Score=114.59 Aligned_cols=115 Identities=27% Similarity=0.352 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEeccccccccccccHHHHHHHHHHH----HhcCCcEEEEccch
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVD 1039 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~----~fi~Id~seL~s~~~G~se~~I~~lF~~A----~k~~PsILfIDEID 1039 (1237)
+|...+||.||+|+|||.+|+++|..+.. +++.++|+++.. .+..+..+..++..+ ......||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 35678999999999999999999999996 999999998865 111111222222111 11122499999999
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHhcCCccc-------CCccEEEEEecCCC
Q 000888 1040 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP 1085 (1237)
Q Consensus 1040 ~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p 1085 (1237)
..... ........-..+.+.||+.|++.... +-.++++|+|+|--
T Consensus 79 Ka~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 79 KAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 98654 22223333346778888888654332 23679999999863
No 187
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.99 E-value=1.8e-08 Score=109.50 Aligned_cols=190 Identities=19% Similarity=0.282 Sum_probs=136.0
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~ 1007 (1237)
.+.+.+|.|.+.+++.|.+.... |.+ ..|.++|||+|..||||++|+||+.++. +..+|.|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 47899999999999998776543 333 3577899999999999999999999888 6778888876654
Q ss_pred cccccccHHHHHHHHHHHHhcC-CcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC
Q 000888 1008 SKWFGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~~-PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~ 1086 (1237)
. +-.+++..+..+ .-|||+|++- + . .... ....|-..++|-....+.+|+|.||+|+.+
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F-----e-~gd~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS-F-----E-EGDD----AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC-C-----C-CCch----HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 3 445666665543 4688999873 1 1 1111 223344556777667788999999999855
Q ss_pred CCc--------------H--------HHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCC-h--hhHH--HHHHHcCCC
Q 000888 1087 DLD--------------E--------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-D--VDFD--AIANMTDGY 1139 (1237)
Q Consensus 1087 ~Ld--------------~--------aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~-d--~dl~--~LA~~T~Gy 1139 (1237)
.|+ + .+-.||+..+.|..++.++-.+|++.++++.++.- + .+.+ +.|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 443 1 12339999999999999999999999999888763 2 2222 335555677
Q ss_pred cHHHHHHHHHH
Q 000888 1140 SGSDLKNLCVT 1150 (1237)
Q Consensus 1140 SgaDL~~L~~~ 1150 (1237)
||+--.+.++.
T Consensus 266 SGR~A~QF~~~ 276 (287)
T COG2607 266 SGRVAWQFIRD 276 (287)
T ss_pred ccHhHHHHHHH
Confidence 77655555443
No 188
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=9.1e-09 Score=120.89 Aligned_cols=181 Identities=19% Similarity=0.156 Sum_probs=121.3
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-----------E
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----------I 999 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f-----------i 999 (1237)
..++++|.|++.+++.|...+.. .+.+..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 35789999999999999988863 23346799999999999999999999883210 0
Q ss_pred EE---------------eccccccccc---c--------ccHHHHHHHHHHHH----hcCCcEEEEccchhhhcCCCCCc
Q 000888 1000 NI---------------SMSSITSKWF---G--------EGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPG 1049 (1237)
Q Consensus 1000 ~I---------------d~seL~s~~~---G--------~se~~I~~lF~~A~----k~~PsILfIDEID~L~~~r~~~~ 1049 (1237)
.+ +.+++.--.. + -.-..++.+...+. ...+.||+|||+|.+-
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 00 0011110000 0 01223455444433 3457899999999772
Q ss_pred hhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhH
Q 000888 1050 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDF 1129 (1237)
Q Consensus 1050 ~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl 1129 (1237)
....+.|+..++.. ....++|.+|+.++.+.+.+++|+ ..+.|+.|+.++..+++..... ...+..+
T Consensus 155 -----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~---~~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGP---DLPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhcc---cCCHHHH
Confidence 34456666666653 345677778888889999999999 7889999999999988877531 1222334
Q ss_pred HHHHHHcCCCcHHHH
Q 000888 1130 DAIANMTDGYSGSDL 1144 (1237)
Q Consensus 1130 ~~LA~~T~GySgaDL 1144 (1237)
..+++.+.|-.+..+
T Consensus 222 ~~l~~~s~Gsp~~Al 236 (365)
T PRK07471 222 AALAALAEGSVGRAL 236 (365)
T ss_pred HHHHHHcCCCHHHHH
Confidence 677888887555444
No 189
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.95 E-value=1.2e-08 Score=108.65 Aligned_cols=145 Identities=16% Similarity=0.211 Sum_probs=100.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHHH
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1024 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------------------fi~Id~seL~s~~~G~se~~I~~lF~~ 1024 (1237)
.+..+||+||+|+|||++|+++++.+... +..+.... . ...-..++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34679999999999999999999998432 22222110 0 0123455666666
Q ss_pred HHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccc
Q 000888 1025 ASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRL 1100 (1237)
Q Consensus 1025 A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I 1100 (1237)
+.. ....||+|||+|.|. ....+.|+..++.. +...++|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 554 245699999999883 22345566666653 235666667777789999999999 589
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCc
Q 000888 1101 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYS 1140 (1237)
Q Consensus 1101 ~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GyS 1140 (1237)
.|..|+.++..++++.. ++ ++..+..++..+.|..
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGSP 185 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCCc
Confidence 99999999998888776 33 3455777788777643
No 190
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.95 E-value=7.1e-09 Score=126.91 Aligned_cols=186 Identities=24% Similarity=0.284 Sum_probs=106.7
Q ss_pred HHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000888 916 FEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 995 (1237)
Q Consensus 916 ~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg 995 (1237)
+...+.+.+.| +|.|++.+|..+.-.+...... ....+...+...+|||+|+||+|||++|+++++.+.
T Consensus 193 ~~~~l~~si~p---------~i~G~~~~k~~l~l~l~gg~~~--~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~ 261 (509)
T smart00350 193 IYERLSRSLAP---------SIYGHEDIKKAILLLLFGGVHK--NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAP 261 (509)
T ss_pred HHHHHHHhhCc---------cccCcHHHHHHHHHHHhCCCcc--ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcC
Confidence 34445666665 5789999988877666442111 001111122234799999999999999999999875
Q ss_pred Cc-EEEE---ecccccccccccc---HHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHh--
Q 000888 996 AN-FINI---SMSSITSKWFGEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW-- 1065 (1237)
Q Consensus 996 ~~-fi~I---d~seL~s~~~G~s---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~l-- 1065 (1237)
.. |+.. ++..+........ +..+ ...+..| ..++++|||++.+- ...+..+..++++-...+
T Consensus 262 r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~-----~~~q~~L~e~me~~~i~i~k 333 (509)
T smart00350 262 RAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLA---DNGVCCIDEFDKMD-----DSDRTAIHEAMEQQTISIAK 333 (509)
T ss_pred cceEcCCCCCCcCCccccceEccCcceEEecCccEEec---CCCEEEEechhhCC-----HHHHHHHHHHHhcCEEEEEe
Confidence 33 3221 2222211111110 0000 0011122 34799999999882 222222222221100000
Q ss_pred cCCcccCCccEEEEEecCCCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhh
Q 000888 1066 DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAK 1120 (1237)
Q Consensus 1066 dgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~v-~~Pd~eeR~eILk~~L~~ 1120 (1237)
.+....-+.++.||||+|..+ .|++++++|||..+.+ +.|+.+...+|+++.+..
T Consensus 334 ~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 334 AGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 222223346889999999752 6999999999876544 889999999999987643
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6.7e-09 Score=129.57 Aligned_cols=181 Identities=22% Similarity=0.384 Sum_probs=131.9
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEec
Q 000888 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISM 1003 (1237)
Q Consensus 934 f~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~Id~ 1003 (1237)
++-++|-++-...+.+.+.. +..++-+|.|+||+|||.++..+|... +..++.+++
T Consensus 169 lDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 44557777777666666642 112456899999999999999999876 567899999
Q ss_pred cccc--cccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch-hHHHHHHHHHHHHHhcCCcccCCccEEEEE
Q 000888 1004 SSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVLA 1080 (1237)
Q Consensus 1004 seL~--s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~-~~a~~~il~eLL~~ldgl~~~~~~~VlVIa 1080 (1237)
+.+. .+|-|+.|+.++.+..+..+..+.|||||||+.+.+.....+. ..+.+-+.-.| .++.+-+||
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----------ARGeL~~IG 304 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----------ARGELRCIG 304 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----------hcCCeEEEE
Confidence 8885 4789999999999999999999999999999999987654332 23333333332 245677787
Q ss_pred ecCC-----CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCC----CC-ChhhHHHHHHHcCCC
Q 000888 1081 ATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED----LS-PDVDFDAIANMTDGY 1139 (1237)
Q Consensus 1081 TTN~-----p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~----l~-~d~dl~~LA~~T~Gy 1139 (1237)
+|.. ...-|+++-||| ..|.+..|+.++-..||+-+-.+.. +. .+..+...+.++.-|
T Consensus 305 ATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 305 ATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred eccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 7754 346789999999 6889999999999999998765432 22 334445545544433
No 192
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.93 E-value=5.7e-08 Score=108.60 Aligned_cols=192 Identities=15% Similarity=0.195 Sum_probs=116.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEE--Eecccc--------ccccccc-----c-HHHHHHHH----HHHHhcC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG-ANFIN--ISMSSI--------TSKWFGE-----G-EKYVKAVF----SLASKIA 1029 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg-~~fi~--Id~seL--------~s~~~G~-----s-e~~I~~lF----~~A~k~~ 1029 (1237)
..++|+||+|+|||++++.+++.+. ..++. +....+ +....|. . ......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4589999999999999999999985 22222 111111 0001111 1 11122222 2233456
Q ss_pred CcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC--CCCC----cHHHHhhccccccCC
Q 000888 1030 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR--PFDL----DEAVIRRLPRRLMVN 1103 (1237)
Q Consensus 1030 PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~--p~~L----d~aLlrRFd~~I~v~ 1103 (1237)
+.||+|||++.+. ... ...+..+ -.........+.|+.+... ...+ ...+.+|+...++++
T Consensus 124 ~~vliiDe~~~l~--------~~~-~~~l~~l----~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PEL-LEELRML----SNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHH-HHHHHHH----hCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 7899999999772 111 1112222 1111111222333333321 1111 124666887888999
Q ss_pred CCCHHHHHHHHHHHHhhCCC-----CChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000888 1104 LPDAPNRAKILQVILAKEDL-----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAP 1178 (1237)
Q Consensus 1104 ~Pd~eeR~eILk~~L~~~~l-----~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~~ 1178 (1237)
..+.++..+++...+...+. ..+..++.|++.+.|+.. .|..+|..|...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~-------------------- 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE-------------------- 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc--------------------
Confidence 99999999999998865432 245678889999999765 5999999988776543
Q ss_pred CCCCCCCCccccHHHHHHHHHHhc
Q 000888 1179 ALSGCADIRPLNMDDFKYAHERVC 1202 (1237)
Q Consensus 1179 ~~~~~~~~r~Lt~eDF~~AL~~v~ 1202 (1237)
....|+.++++.++..++
T Consensus 250 ------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ------EKREIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 225699999999999875
No 193
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=8.4e-09 Score=115.56 Aligned_cols=97 Identities=26% Similarity=0.509 Sum_probs=70.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccccH-HHHHHHHHHH----HhcCCcEEEEccchhhhcC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEGE-KYVKAVFSLA----SKIAPSVIFVDEVDSMLGR 1044 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s-~~~G~se-~~I~~lF~~A----~k~~PsILfIDEID~L~~~ 1044 (1237)
.+|||.||+|||||.||+.+|+.++.||...++..|.. .|+|+.- ..+-.++..| .+...+||||||||.+..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 47999999999999999999999999999999988853 6888864 4445555443 2345689999999999876
Q ss_pred CCCCch-hHHH-HHHHHHHHHHhcC
Q 000888 1045 RENPGE-HEAM-RKMKNEFMVNWDG 1067 (1237)
Q Consensus 1045 r~~~~~-~~a~-~~il~eLL~~ldg 1067 (1237)
.+++.. .... .-+.+.||..+.|
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcC
Confidence 654321 1111 2345566666664
No 194
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.4e-08 Score=117.01 Aligned_cols=180 Identities=13% Similarity=0.214 Sum_probs=122.5
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 1002 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~----------fi~Id 1002 (1237)
.|++|.|++.+++.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 478999999999999998863 2334689999999999999999999987321 11112
Q ss_pred ccccc---------ccc--------cc--------ccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHH
Q 000888 1003 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEA 1053 (1237)
Q Consensus 1003 ~seL~---------s~~--------~G--------~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a 1053 (1237)
.+++. ++. .| -.-..++.+...+.. ....|++||++|.|-
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 22221 100 00 001235555555443 245799999999882
Q ss_pred HHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHH
Q 000888 1054 MRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIA 1133 (1237)
Q Consensus 1054 ~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA 1133 (1237)
....|.|+..++.. + +.++|..|+.++.|-+.+++|+ ..+.|..++.++..+++......... +.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 23456677666653 2 3456667788999999999999 78999999999999999876432221 22357888
Q ss_pred HHcCCCcHHHHH
Q 000888 1134 NMTDGYSGSDLK 1145 (1237)
Q Consensus 1134 ~~T~GySgaDL~ 1145 (1237)
....|-.+..+.
T Consensus 209 ~~a~Gs~~~al~ 220 (314)
T PRK07399 209 ALAQGSPGAAIA 220 (314)
T ss_pred HHcCCCHHHHHH
Confidence 888886665554
No 195
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.9e-08 Score=116.34 Aligned_cols=73 Identities=32% Similarity=0.586 Sum_probs=62.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccccc-HHHHHHHHHHH----HhcCCcEEEEccchhhhc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLG 1043 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s-~~~G~s-e~~I~~lF~~A----~k~~PsILfIDEID~L~~ 1043 (1237)
.+|||.||+|+|||.||+.||+.++.||.-.+|..|.. .|+|+. |..+..++..| .+.+..|+||||+|.+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 37999999999999999999999999999999998854 688876 55667777665 345679999999999973
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.90 E-value=8.1e-09 Score=100.52 Aligned_cols=127 Identities=33% Similarity=0.456 Sum_probs=81.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccccc--------------cccccHHHHHHHHHHHHhcCCcEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVI 1033 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~---fi~Id~seL~s~--------------~~G~se~~I~~lF~~A~k~~PsIL 1033 (1237)
..++|+||||||||++++++|..+... ++.+++...... ...........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 888887654321 123345567788899998888999
Q ss_pred EEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC-CCCCcHHHHhhccccccCCCC
Q 000888 1034 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-PFDLDEAVIRRLPRRLMVNLP 1105 (1237)
Q Consensus 1034 fIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-p~~Ld~aLlrRFd~~I~v~~P 1105 (1237)
+|||++.+..... ................ .......+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-----EALLLLLEELRLLLLL---KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-----HHHHHhhhhhHHHHHH---HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999998853221 1100000000000000 12345788888886 444555566688777766543
No 197
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.89 E-value=9.6e-10 Score=111.03 Aligned_cols=112 Identities=24% Similarity=0.380 Sum_probs=69.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------ccccccc--cHHHHHHHHHHHHhcCCcEEEEccchhhhc
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKWFGE--GEKYVKAVFSLASKIAPSVIFVDEVDSMLG 1043 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL------~s~~~G~--se~~I~~lF~~A~k~~PsILfIDEID~L~~ 1043 (1237)
+|||+||||||||+||+.+|+.++.+++.+.+... .+.+.-. ........+..+.+ .+.|++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 58999999999999999999999999999988653 2211110 00000000001111 4689999999855
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCccc---------CCc------cEEEEEecCCCC----CCcHHHHhhc
Q 000888 1044 RRENPGEHEAMRKMKNEFMVNWDGLRTK---------DTE------RILVLAATNRPF----DLDEAVIRRL 1096 (1237)
Q Consensus 1044 ~r~~~~~~~a~~~il~eLL~~ldgl~~~---------~~~------~VlVIaTTN~p~----~Ld~aLlrRF 1096 (1237)
...+++.|+..++.-... ... .+.+|+|+|... .+++++++||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 134455555555432111 011 389999999988 9999999998
No 198
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=4.3e-08 Score=113.79 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=106.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHH
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 1023 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------------------fi~Id~seL~s~~~G~se~~I~~lF~ 1023 (1237)
+.+..+||+||+|+||+++|+++|+.+.+. ++.+....- ++ .-.-..++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 344689999999999999999999998442 222222100 00 012345666655
Q ss_pred HHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhcccc
Q 000888 1024 LASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1099 (1237)
Q Consensus 1024 ~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~ 1099 (1237)
.+.. ....|++||++|.|- ....|.|+..++.- +.++++|.+|+.++.|.+.+++|+ ..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~SRc-~~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKSRC-QQ 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHhhc-ee
Confidence 5543 345799999999882 34556777776653 467888899999999999999999 56
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHH
Q 000888 1100 LMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1144 (1237)
Q Consensus 1100 I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL 1144 (1237)
+.|..|+.++..+++..... ...+.+...++..+.|-.+..+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLRAL 201 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHHHH
Confidence 99999999988888876431 1234445667777777655443
No 199
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.88 E-value=2.6e-08 Score=116.20 Aligned_cols=168 Identities=23% Similarity=0.302 Sum_probs=106.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec-------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISM------- 1003 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-~~fi~Id~------- 1003 (1237)
..|.-++|++.+|..|.-... .....++||.|+.|+|||+++|+||.-|. ...+. .|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 346778999999988754332 23346899999999999999999999882 11111 11
Q ss_pred -------------------------cccccccccccHH-HHH-----HHHH----------HHHhcCCcEEEEccchhhh
Q 000888 1004 -------------------------SSITSKWFGEGEK-YVK-----AVFS----------LASKIAPSVIFVDEVDSML 1042 (1237)
Q Consensus 1004 -------------------------seL~s~~~G~se~-~I~-----~lF~----------~A~k~~PsILfIDEID~L~ 1042 (1237)
..++....|.++. .+. ++.+ .|+ ....||||||+..|-
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL~ 157 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLLD 157 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEecccccc
Confidence 0112222233333 111 1111 111 123799999998772
Q ss_pred cCCCCCchhHHHHHHHHH--HHHHhcCCcccCCccEEEEEecCCC-CCCcHHHHhhccccccCCCC-CHHHHHHHHHHHH
Q 000888 1043 GRRENPGEHEAMRKMKNE--FMVNWDGLRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVIL 1118 (1237)
Q Consensus 1043 ~~r~~~~~~~a~~~il~e--LL~~ldgl~~~~~~~VlVIaTTN~p-~~Ld~aLlrRFd~~I~v~~P-d~eeR~eILk~~L 1118 (1237)
......+..++.+ -....+|+......++++|+|+|.- ..|-+.++.||...+.+..| +.++|.+|++..+
T Consensus 158 -----d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 158 -----DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred -----HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 1112222222222 1223455555556799999999975 58999999999999999655 7899999999987
Q ss_pred hh
Q 000888 1119 AK 1120 (1237)
Q Consensus 1119 ~~ 1120 (1237)
..
T Consensus 233 ~f 234 (423)
T COG1239 233 AF 234 (423)
T ss_pred Hh
Confidence 65
No 200
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5.5e-09 Score=117.13 Aligned_cols=227 Identities=21% Similarity=0.270 Sum_probs=157.7
Q ss_pred ccCCccccccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 000888 417 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 496 (1237)
Q Consensus 417 i~~~~~~~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~l 496 (1237)
++++.+.+=-||+-=| .-+.|+-|++-|.+-|+-.++ +-..+|-+-++=|||.|||| ..++.|.||||+++-++.
T Consensus 131 ~LPa~eF~glWEsLiy--ds~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR~ 205 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIY--DSNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIRT 205 (423)
T ss_pred eccchhhhhhHHHHhh--cccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheeee
Confidence 4566666666887433 367788888888888877665 45578999999999999999 799999999999988771
Q ss_pred EEEeccccCCCCchhhHhhhhcCCccccccccccCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 000888 497 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 576 (1237)
Q Consensus 497 l~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1237)
.+=|.
T Consensus 206 -----~~~y~---------------------------------------------------------------------- 210 (423)
T KOG0744|consen 206 -----NDRYY---------------------------------------------------------------------- 210 (423)
T ss_pred -----cCccc----------------------------------------------------------------------
Confidence 11010
Q ss_pred cccccccccccCCeeeEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccCCCCcceeeccCCCCCCCCCCCCCCCCCccc
Q 000888 577 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 656 (1237)
Q Consensus 577 ~~~s~~~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff 656 (1237)
+| . ..|.|. |
T Consensus 211 ----------~~-----------------------------~---liEins-------------------------h--- 220 (423)
T KOG0744|consen 211 ----------KG-----------------------------Q---LIEINS-------------------------H--- 220 (423)
T ss_pred ----------cc-----------------------------e---EEEEeh-------------------------h---
Confidence 00 0 123332 1
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhhccCCCe--EEEEcchhhhhc------------CCcchhhhHHHHHhcCC
Q 000888 657 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPF--ILFMKDAEKSIA------------GNSDSYSTFKSRLEKLP 722 (1237)
Q Consensus 657 ~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~--ILfi~di~~~~~------------~~~~~~~~lk~~L~~l~ 722 (1237)
--+|||-+| +-.++..+|+-+.+..+.... .|.|||+|.+.. ...+..|.|-..|+++.
T Consensus 221 -----sLFSKWFsE--SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 221 -----SLFSKWFSE--SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred -----HHHHHHHhh--hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc
Confidence 235888888 777888999888777665443 457999998763 23556667777777774
Q ss_pred --CcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHH
Q 000888 723 --DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDE 800 (1237)
Q Consensus 723 --g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE 800 (1237)
.||+|++.-|..+++ |.|+-.|-+.+++|+.|..+
T Consensus 294 ~~~NvliL~TSNl~~si-------------------------------------------D~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 294 RYPNVLILATSNLTDSI-------------------------------------------DVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred cCCCEEEEeccchHHHH-------------------------------------------HHHhhhHhhheeecCCccHH
Confidence 599999999988753 33344457789999999999
Q ss_pred HHHHHHHHhhhhhhhh---------------hhhcCCchhHHHHhhcCCCCccCcccc
Q 000888 801 ALLASWKHQLDRDSET---------------LKMKGNLNHLRTVLGRSGLECEGLETL 843 (1237)
Q Consensus 801 ~RL~IwK~qL~~~~e~---------------l~l~~Nv~~l~~vL~~~glsgaDL~~L 843 (1237)
++.+|+|.-+++++.. ...+++.......+.+.|++|.-|+.+
T Consensus 331 ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkL 388 (423)
T KOG0744|consen 331 AIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKL 388 (423)
T ss_pred HHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhh
Confidence 9999999766665544 222333333333445678888777665
No 201
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.86 E-value=1.3e-07 Score=107.73 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=63.5
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1085 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1085 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e 1163 (1237)
|+-++..++.|. .+|...+++.++.++|++..++.+++. ++..++.|+....--|-+--.+|+.-|...|-++
T Consensus 342 PhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r----- 415 (450)
T COG1224 342 PHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR----- 415 (450)
T ss_pred CCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-----
Confidence 788999999998 778888999999999999999887766 4455677777655444443334444333333221
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 000888 1164 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 1201 (1237)
Q Consensus 1164 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v 1201 (1237)
....+..+|++.|.+-+
T Consensus 416 ---------------------g~~~V~~~dVe~a~~lF 432 (450)
T COG1224 416 ---------------------GSKRVEVEDVERAKELF 432 (450)
T ss_pred ---------------------CCCeeehhHHHHHHHHH
Confidence 22468889999988766
No 202
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.86 E-value=5.7e-09 Score=121.02 Aligned_cols=142 Identities=28% Similarity=0.448 Sum_probs=90.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--cccccccHHHHH----HHHHHHHh-cCC---cEEEEccchh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEGEKYVK----AVFSLASK-IAP---SVIFVDEVDS 1040 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~--s~~~G~se~~I~----~lF~~A~k-~~P---sILfIDEID~ 1040 (1237)
.++||.||||+|||+||+++|..++.+|+++.|..-. +..+|...-... ..|..... ... +|+++|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 4799999999999999999999999999999986432 122222111111 00000000 001 4999999985
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHhcCCc-ccCCccEEEEEecC-----CCCCCcHHHHhhccccccCCCCC-HHHHHHH
Q 000888 1041 MLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDTERILVLAATN-----RPFDLDEAVIRRLPRRLMVNLPD-APNRAKI 1113 (1237)
Q Consensus 1041 L~~~r~~~~~~~a~~~il~eLL~~ldgl~-~~~~~~VlVIaTTN-----~p~~Ld~aLlrRFd~~I~v~~Pd-~eeR~eI 1113 (1237)
. .+..+.++..++++.-..+.+.. ..-+.+++||+|.| ....|++++++||...++++.|+ .++...+
T Consensus 124 a-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 124 A-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred C-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 5 33333333333333333333444 34457899999999 45678999999998899999994 4444444
Q ss_pred HHHH
Q 000888 1114 LQVI 1117 (1237)
Q Consensus 1114 Lk~~ 1117 (1237)
+...
T Consensus 199 ~~~~ 202 (329)
T COG0714 199 LARV 202 (329)
T ss_pred HHhC
Confidence 4443
No 203
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=3.5e-08 Score=120.05 Aligned_cols=155 Identities=24% Similarity=0.345 Sum_probs=102.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHH--------HhcCCcEEEEccchhhh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA--------SKIAPSVIFVDEVDSML 1042 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A--------~k~~PsILfIDEID~L~ 1042 (1237)
+-+||+||||-|||+||+.||+++|+.++.+++++-.+ ...++...+.| ....|.+|+|||||--
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa- 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA- 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC-
Confidence 45899999999999999999999999999999987432 22222222222 2257899999999922
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhc-------CCcccCC----------ccEEEEEecCCCCCCcHHHHh--hccccccCC
Q 000888 1043 GRRENPGEHEAMRKMKNEFMVNWD-------GLRTKDT----------ERILVLAATNRPFDLDEAVIR--RLPRRLMVN 1103 (1237)
Q Consensus 1043 ~~r~~~~~~~a~~~il~eLL~~ld-------gl~~~~~----------~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~ 1103 (1237)
. +..+..++..+. |-..... -.--|||.||... -|+++. -|..+++|.
T Consensus 400 --------~---~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~ 466 (877)
T KOG1969|consen 400 --------P---RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFV 466 (877)
T ss_pred --------c---HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEec
Confidence 1 222222222222 1110000 0124677788654 366654 688899999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCh-hhHHHHHHHcCCCcHHHHH
Q 000888 1104 LPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSGSDLK 1145 (1237)
Q Consensus 1104 ~Pd~eeR~eILk~~L~~~~l~~d-~dl~~LA~~T~GySgaDL~ 1145 (1237)
.|...-..+-|+.++.++++..+ ..+..|+..+++-...-|.
T Consensus 467 ~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCIN 509 (877)
T KOG1969|consen 467 PPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCIN 509 (877)
T ss_pred CCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHH
Confidence 99999999999999988887743 4567777777764444443
No 204
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.85 E-value=4e-09 Score=124.81 Aligned_cols=83 Identities=20% Similarity=0.414 Sum_probs=72.0
Q ss_pred cceeeeCCeeEEcCCCCcceeecCCC--CccceEEEEEEecCCceEEEEEEeCCCceEEc--CeeecCCCeeEccCCCEE
Q 000888 138 SNVPICASIFTVGSSRQCNFPLKDQA--ISAVLCKIKHVQSEGSAVAMVESIGSKGLQVN--GKNLKKNTSCELRSGDEV 213 (1237)
Q Consensus 138 ~~l~i~~~~~tvGr~~~Cd~~l~~~~--~s~~~c~i~~~~~~~~~~~~led~s~nGt~VN--g~~~~k~~~~~L~~gDeI 213 (1237)
..+.+....++|||+.+||++|.+.. ||..||+|... ++ ..||+|+|+|||||| |..|+++..+.|+.||+|
T Consensus 17 ~~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g--~~~l~DlStNGT~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 17 AQKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DG--AYLLTDLSTNGVFLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred eEEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CC--EEEEEECCCCCeEECCCCCCCCCCCceEcCCCCEE
Confidence 46677788999999999999999998 99999999965 22 479999999999999 999999999999999999
Q ss_pred EEeecCCeeEE
Q 000888 214 VFGSLGNHAYI 224 (1237)
Q Consensus 214 ~f~~~~~~ayi 224 (1237)
.|+...-++++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99875544443
No 205
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.85 E-value=4.3e-08 Score=121.90 Aligned_cols=211 Identities=21% Similarity=0.286 Sum_probs=125.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccccH--HHHH-H--HHH--HHHhcCCcEEEEccchh
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK-A--VFS--LASKIAPSVIFVDEVDS 1040 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eLg--~~fi~Id~seL~s~~~G~se--~~I~-~--lF~--~A~k~~PsILfIDEID~ 1040 (1237)
..+|||.|+||||||++|++++..+. .+|+++.........+|... ..+. . .|. ...+...++||||||+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 46899999999999999999999885 46888875433333444321 0000 0 000 00112236999999998
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHhc---------CCcccCCccEEEEEecCCCC---CCcHHHHhhccccccCC-CCCH
Q 000888 1041 MLGRRENPGEHEAMRKMKNEFMVNWD---------GLRTKDTERILVLAATNRPF---DLDEAVIRRLPRRLMVN-LPDA 1107 (1237)
Q Consensus 1041 L~~~r~~~~~~~a~~~il~eLL~~ld---------gl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd~~I~v~-~Pd~ 1107 (1237)
+- ..+.+.|+..|+ +.......++.||+|+|..+ .|.+.++.||...+.+. .|+.
T Consensus 96 l~------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~ 163 (589)
T TIGR02031 96 LD------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQ 163 (589)
T ss_pred CC------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCH
Confidence 82 223333444343 22222335789999999765 79999999999877664 5678
Q ss_pred HHHHHHHHHHHhhCC----CCChhhHHHHH---HHcC--CCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCC
Q 000888 1108 PNRAKILQVILAKED----LSPDVDFDAIA---NMTD--GYSGSDLKNLCVTAAHRPI---KEILEKEKKERAAAMAEGK 1175 (1237)
Q Consensus 1108 eeR~eILk~~L~~~~----l~~d~dl~~LA---~~T~--GySgaDL~~L~~~Aa~~ai---reil~~e~~~~~~a~~e~~ 1175 (1237)
++|.+|++..+.... .........|. +... -.+...+..++..+....+ |..+......++.+...++
T Consensus 164 ~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr 243 (589)
T TIGR02031 164 DLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGR 243 (589)
T ss_pred HHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCC
Confidence 889999988763221 11112222222 1222 2344445556655543322 3333334444555544444
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHhcc
Q 000888 1176 PAPALSGCADIRPLNMDDFKYAHERVCA 1203 (1237)
Q Consensus 1176 ~~~~~~~~~~~r~Lt~eDF~~AL~~v~p 1203 (1237)
..|+.+|++.|..-|.+
T Consensus 244 -----------~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 244 -----------TEVTEEDLKLAVELVLL 260 (589)
T ss_pred -----------CCCCHHHHHHHHHHHhh
Confidence 57999999999987753
No 206
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.83 E-value=3.7e-08 Score=112.60 Aligned_cols=146 Identities=19% Similarity=0.281 Sum_probs=98.2
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 995 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-------------------- 995 (1237)
++.+.+.....+...+.. . .+-+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~----------~--~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE----------S--GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh----------c--CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 445666666666665542 1 11223599999999999999999999996
Q ss_pred ----CcEEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcC
Q 000888 996 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1067 (1237)
Q Consensus 996 ----~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldg 1067 (1237)
..++.++.++..... .....++.+-+..... +..||+|||+|.|. ....+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhcc
Confidence 467777776643321 2334455554444333 45799999999883 2344555555544
Q ss_pred CcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHH
Q 000888 1068 LRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1237)
Q Consensus 1068 l~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1112 (1237)
...+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+..
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHH
Confidence 3467888889999999999999999 677887755444433
No 207
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.82 E-value=2e-08 Score=99.17 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhhccCC-CeEEEEcchhhhhcCC--------cchhhhHHHHHhcCCC---cEEEEEeeccCCCcccc
Q 000888 674 KLLINTLFEVVFSESRSC-PFILFMKDAEKSIAGN--------SDSYSTFKSRLEKLPD---KVIVIGSHTHTDNRKEK 740 (1237)
Q Consensus 674 k~~i~~L~ev~~~~~~~~-p~ILfi~di~~~~~~~--------~~~~~~lk~~L~~l~g---~vvvIGst~~~d~~~~~ 740 (1237)
+..+..+|+.+.. .. |.||||||+|.+.... ....+.|...|++... +++|||++|..+..++.
T Consensus 43 ~~~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~ 118 (132)
T PF00004_consen 43 EQKIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPA 118 (132)
T ss_dssp HHHHHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHH
T ss_pred ccccccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHh
Confidence 3356666666666 55 9999999999988755 4455566666666544 69999999987654444
No 208
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.80 E-value=3.9e-08 Score=116.95 Aligned_cols=122 Identities=23% Similarity=0.317 Sum_probs=76.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecc----cccccc----cccc--HHHHHHHHHHHHhc--CCc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS----SITSKW----FGEG--EKYVKAVFSLASKI--APS 1031 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~--~-----fi~Id~s----eL~s~~----~G~s--e~~I~~lF~~A~k~--~Ps 1031 (1237)
++++|+||||||||++|+++|..+.. . ++.+... +++..+ .|.. ...+..+...|... .|.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 57999999999999999999998842 1 2222221 122111 0100 12233444556543 479
Q ss_pred EEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCC------------------cccCCccEEEEEecCCCC----CCc
Q 000888 1032 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL------------------RTKDTERILVLAATNRPF----DLD 1089 (1237)
Q Consensus 1032 ILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl------------------~~~~~~~VlVIaTTN~p~----~Ld 1089 (1237)
|||||||++- .+.+++.++++.++.- .-.-+.++.||||+|..+ .+|
T Consensus 275 vliIDEINRa-----------ni~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 275 VFIIDEINRA-----------NLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred EEEEehhhcc-----------CHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 9999999844 1234555555555421 012347899999999876 799
Q ss_pred HHHHhhccccccCCC
Q 000888 1090 EAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1090 ~aLlrRFd~~I~v~~ 1104 (1237)
.+++||| ..|.+.+
T Consensus 344 ~AlrRRF-~fi~i~p 357 (459)
T PRK11331 344 YALRRRF-SFIDIEP 357 (459)
T ss_pred HHHHhhh-heEEecC
Confidence 9999999 4455543
No 209
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=1.3e-07 Score=109.80 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=104.4
Q ss_pred cchhccc-cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 000888 933 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 997 (1237)
Q Consensus 933 tf~dI~G-le~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------- 997 (1237)
.|+.|.| ++.+.+.|+..+.. .+.+..+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4778877 88899999888752 2344678999999999999999999987321
Q ss_pred ----------EEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 998 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 998 ----------fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
+..+... +.. -.-..++.+.+.+.. ....|++|||+|.+- ....|.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 2222111 010 112345555444432 234699999999882 334566777
Q ss_pred HhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 1116 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~ 1116 (1237)
.++.. +..+++|.+|+.+..|-+.+++|+ ..++|..|+.++..++++.
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 77653 456777778888899999999999 7899999999888777753
No 210
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.80 E-value=4e-09 Score=113.91 Aligned_cols=46 Identities=41% Similarity=0.586 Sum_probs=37.0
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
.|.||.|++..|..|.-.... ..++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 378999999999999876652 1589999999999999999999766
No 211
>PRK04132 replication factor C small subunit; Provisional
Probab=98.79 E-value=5.2e-08 Score=123.90 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=120.2
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccccHHHHHHHHHHHHhcC------CcEEE
Q 000888 968 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVIF 1034 (1237)
Q Consensus 968 kP~~gVLL~G--PPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~------PsILf 1034 (1237)
-|.-+-+..| |++.|||++|+++|+++ +.+++.+++++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3444567778 99999999999999998 56899999987432 234555554443222 36999
Q ss_pred EccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHH
Q 000888 1035 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 1114 (1237)
Q Consensus 1035 IDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eIL 1114 (1237)
|||+|.|- ....+.|+..++.. ..++.+|++||.+..+.+++++|+ ..+.|..|+.++....+
T Consensus 636 IDEaD~Lt------------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADALT------------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccCC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 99999882 12334455555542 357888899999999999999999 78999999999999999
Q ss_pred HHHHhhCCCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1115 QVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1115 k~~L~~~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
+.++.++++. ++..+..|+..++|-....| ++++.++
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI-n~Lq~~~ 736 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAI-NILQAAA 736 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 9988877765 56678999999999666555 4444443
No 212
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.78 E-value=2.8e-07 Score=104.58 Aligned_cols=177 Identities=16% Similarity=0.190 Sum_probs=111.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccccc-------------ccc---cccHHHHHHHHHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS-------------KWF---GEGEKYVKAVFSLA 1025 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---------g~~fi~Id~seL~s-------------~~~---G~se~~I~~lF~~A 1025 (1237)
.++||+|++|+|||++++.++... .+|++.+.++.--+ ..+ ......-.++....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998765 35788887743200 000 11223344556777
Q ss_pred HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC--CCCcHHHHhhccccccCC
Q 000888 1026 SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP--FDLDEAVIRRLPRRLMVN 1103 (1237)
Q Consensus 1026 ~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p--~~Ld~aLlrRFd~~I~v~ 1103 (1237)
+...+.+|+|||++.++..... .-+.+++ .++.+...-.-+++.+||-... -.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~~-----~qr~~Ln----~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSYR-----KQREFLN----ALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccHH-----HHHHHHH----HHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 8888999999999998644321 1223333 3333333334556667664432 345688999994 44554
Q ss_pred CC-CHHHHHHHHHHHHhhCCCC------ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 000888 1104 LP-DAPNRAKILQVILAKEDLS------PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 1158 (1237)
Q Consensus 1104 ~P-d~eeR~eILk~~L~~~~l~------~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aire 1158 (1237)
.- ..++-..++..+.....+. ...-...|-.+++|..| +|..|+..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 43 2344455666655544433 22223567788899776 8999999999988774
No 213
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.77 E-value=7.6e-08 Score=119.94 Aligned_cols=50 Identities=34% Similarity=0.495 Sum_probs=42.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 997 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~ 997 (1237)
.-++++.|+++.+..++..+.. . .+++|+||||||||++++++|+.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~--------------~--~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ--------------K--RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc--------------C--CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 5678999999999998887752 1 379999999999999999999999543
No 214
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.75 E-value=2.7e-08 Score=118.83 Aligned_cols=200 Identities=24% Similarity=0.318 Sum_probs=118.7
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~ 1007 (1237)
..+|++|.|-......+.+.+.. ..+....|||.|.+||||..+|++|-+.. +.||+.++|+.+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 46899999988877777776642 12223579999999999999999998776 7899999997652
Q ss_pred -----cccccccHHH--------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCc
Q 000888 1008 -----SKWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 1074 (1237)
Q Consensus 1008 -----s~~~G~se~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~ 1074 (1237)
+..+|..... -..+|+.|.. +-||+|||..| +...+.-+-+++++--..--|....-..
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 2233322211 1235666555 79999999988 3344444445555421111122222346
Q ss_pred cEEEEEecCCCCCCcHHHHh---------hccccccCCCCCHHHHHH----HHHHHHhh----CCCC----ChhhHHHHH
Q 000888 1075 RILVLAATNRPFDLDEAVIR---------RLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS----PDVDFDAIA 1133 (1237)
Q Consensus 1075 ~VlVIaTTN~p~~Ld~aLlr---------RFd~~I~v~~Pd~eeR~e----ILk~~L~~----~~l~----~d~dl~~LA 1133 (1237)
.|-||||||+. |..++.. |+ .++.+..|...+|.+ +...++.+ .+.. .+..+..|.
T Consensus 381 DVRIIAATN~n--L~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~ 457 (560)
T COG3829 381 DVRIIAATNRN--LEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLL 457 (560)
T ss_pred EEEEEeccCcC--HHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHH
Confidence 79999999973 3333322 44 356667777767654 33333332 1111 122233333
Q ss_pred HHcCCCcHHHHHHHHHHHHH
Q 000888 1134 NMTDGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1134 ~~T~GySgaDL~~L~~~Aa~ 1153 (1237)
+.----+.++|.+++.+|..
T Consensus 458 ~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 458 RYDWPGNVRELENVIERAVN 477 (560)
T ss_pred hCCCCchHHHHHHHHHHHHh
Confidence 33322355666666666654
No 215
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.1e-07 Score=107.34 Aligned_cols=85 Identities=24% Similarity=0.433 Sum_probs=59.5
Q ss_pred CcEEEEccchhhhcCCCCCchhHHHH-HHHHHHHHHhcCCcc------cCCccEEEEEec----CCCCCCcHHHHhhccc
Q 000888 1030 PSVIFVDEVDSMLGRRENPGEHEAMR-KMKNEFMVNWDGLRT------KDTERILVLAAT----NRPFDLDEAVIRRLPR 1098 (1237)
Q Consensus 1030 PsILfIDEID~L~~~r~~~~~~~a~~-~il~eLL~~ldgl~~------~~~~~VlVIaTT----N~p~~Ld~aLlrRFd~ 1098 (1237)
-+||||||||.++.+....+. ...+ -+...||-.+.|-.- -...++++||+. ..|.+|-|++.-||+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 469999999999866542221 2222 223345444444221 134688999875 4689999999999999
Q ss_pred cccCCCCCHHHHHHHHH
Q 000888 1099 RLMVNLPDAPNRAKILQ 1115 (1237)
Q Consensus 1099 ~I~v~~Pd~eeR~eILk 1115 (1237)
++++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888874
No 216
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.71 E-value=3.1e-07 Score=110.25 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=85.4
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecc-ccccccccc
Q 000888 937 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFGE 1013 (1237)
Q Consensus 937 I~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--~fi~Id~s-eL~s~~~G~ 1013 (1237)
+.|.+++.+.+...+.. ..+|||+||||||||++|++++..++. +|..+.+. ......+|.
T Consensus 22 i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 45666666665554421 147999999999999999999998742 44433332 111223332
Q ss_pred c-HHHH--HHHHHHHHhc---CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhc-------CCcccCCccEEEEE
Q 000888 1014 G-EKYV--KAVFSLASKI---APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-------GLRTKDTERILVLA 1080 (1237)
Q Consensus 1014 s-e~~I--~~lF~~A~k~---~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ld-------gl~~~~~~~VlVIa 1080 (1237)
. -... ..-|...... ...+||+|||..+ + ..+.+.|+..|. +-...-+.++++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----s-------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----G-------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----C-------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 1 0000 1122211111 2249999999755 2 334444444442 11112223455555
Q ss_pred ecCCCC---CCcHHHHhhccccccCCCCC-HHHHHHHHHHH
Q 000888 1081 ATNRPF---DLDEAVIRRLPRRLMVNLPD-APNRAKILQVI 1117 (1237)
Q Consensus 1081 TTN~p~---~Ld~aLlrRFd~~I~v~~Pd-~eeR~eILk~~ 1117 (1237)
| |... ...+++..||-..+.+++|+ .++..+++...
T Consensus 154 T-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 154 S-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred C-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 5 6422 23458999998889999997 45657777653
No 217
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=6.5e-07 Score=103.70 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=112.2
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------
Q 000888 939 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------------- 997 (1237)
Q Consensus 939 Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~--------------------- 997 (1237)
-+....+.|...+.. .+-+..+||+||+|+||+++|+++|+.+-+.
T Consensus 6 W~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~ 72 (325)
T PRK06871 6 WLQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGN 72 (325)
T ss_pred chHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 345566666666542 2334689999999999999999999988331
Q ss_pred ---EEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcc
Q 000888 998 ---FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1070 (1237)
Q Consensus 998 ---fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~ 1070 (1237)
|+.+...+ ++. -.-..++.+...+.. ....|++||++|.|- ....|.||..++.
T Consensus 73 HPD~~~i~p~~--~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE--- 133 (325)
T PRK06871 73 HPDFHILEPID--NKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE--- 133 (325)
T ss_pred CCCEEEEcccc--CCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC---
Confidence 22222110 111 123445555554433 344699999999882 3455667777665
Q ss_pred cCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHH
Q 000888 1071 KDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1144 (1237)
Q Consensus 1071 ~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL 1144 (1237)
++.++++|.+|+.++.|.|.+++|+ ..+.|..|+.++..+.|..... ........+++.+.|-.+..+
T Consensus 134 -Pp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 134 -PRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPLLAL 201 (325)
T ss_pred -CCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHHHHH
Confidence 4567888889999999999999999 7789999999988888876431 222334555666776555443
No 218
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.70 E-value=6.1e-09 Score=104.45 Aligned_cols=120 Identities=29% Similarity=0.391 Sum_probs=62.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-ccc-cccccccHHHH-HHHHHHHH-hcCCcEEEEccchhhhcCCCC
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGEGEKYV-KAVFSLAS-KIAPSVIFVDEVDSMLGRREN 1047 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~s-eL~-s~~~G~se~~I-~~lF~~A~-k~~PsILfIDEID~L~~~r~~ 1047 (1237)
+|||.|+||+|||++|+++|+.++..|.+|.+. ++. ++..|..--.. ...|...+ -.-..|+++|||.+. .
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra-----p 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA-----P 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC-----C
Confidence 589999999999999999999999999998763 331 11112110000 00000000 001259999999855 3
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC-----CCcHHHHhhc
Q 000888 1048 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF-----DLDEAVIRRL 1096 (1237)
Q Consensus 1048 ~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~-----~Ld~aLlrRF 1096 (1237)
+..+.++-+++++--+.+++....-..+++||||-|..+ .|+++.+.||
T Consensus 76 pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 76 PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 344455555555444444454444567899999999865 7889999998
No 219
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.68 E-value=1.3e-07 Score=109.80 Aligned_cols=168 Identities=16% Similarity=0.231 Sum_probs=96.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccccHHH-------HHHHHHHHHhcCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVIFV 1035 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~-----~G~se~~-------I~~lF~~A~k~~PsILfI 1035 (1237)
..|||+|++||||+++|++|-... +.+|+.++|..+.... +|..... -...|+.| ..++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 469999999999999999997766 5799999998763221 1111000 01123333 3489999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------ccCCccEEEEEecCCC-------CCCcHHHHhhcccccc
Q 000888 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1101 (1237)
Q Consensus 1036 DEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1101 (1237)
|||+.|- . .+...|+..++... .....++.||++|+.. ..+.+.+..||. .+.
T Consensus 100 dei~~L~-----~-------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~ 166 (329)
T TIGR02974 100 DELATAS-----L-------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDV 166 (329)
T ss_pred CChHhCC-----H-------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chh
Confidence 9999882 1 22223333332211 1113467888888763 245567777883 455
Q ss_pred CCCCCHHHHHH----HHHHHHhh----CCC-----CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000888 1102 VNLPDAPNRAK----ILQVILAK----EDL-----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1102 v~~Pd~eeR~e----ILk~~L~~----~~l-----~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
+..|...+|.+ +++.++.. .+. .....+..|....-.-+.++|+++++.|+..
T Consensus 167 i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 167 ITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred cCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 66666666644 44444432 111 1222344444444334667777777766654
No 220
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.67 E-value=6e-07 Score=99.45 Aligned_cols=183 Identities=19% Similarity=0.291 Sum_probs=127.1
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEecccc--
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSSI-- 1006 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-g--~~fi~Id~seL-- 1006 (1237)
.+++.+.+.++....|+.+... .-..++|+|||+|+||-+.+.++.+++ | .+=.++...++
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~--------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSST--------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhccc--------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 3566677788888888776531 223589999999999999999999988 3 22122211111
Q ss_pred -----------ccc--------cccccH-HHHHHHHHHHHhc---------CCcEEEEccchhhhcCCCCCchhHHHHHH
Q 000888 1007 -----------TSK--------WFGEGE-KYVKAVFSLASKI---------APSVIFVDEVDSMLGRRENPGEHEAMRKM 1057 (1237)
Q Consensus 1007 -----------~s~--------~~G~se-~~I~~lF~~A~k~---------~PsILfIDEID~L~~~r~~~~~~~a~~~i 1057 (1237)
.+. -.|... -.+..+.....+. ...|++|-|+|.|. ...+.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----RDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----HHHHHHHHHH
Confidence 111 112222 2344444444333 23599999999993 3456777777
Q ss_pred HHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHc
Q 000888 1058 KNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT 1136 (1237)
Q Consensus 1058 l~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T 1136 (1237)
++-.. .++-+|..+|....+-+++++|+ ..|.++.|+.++...++...+.++++. +..-+..||+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 76552 45666777899999999999998 678999999999999999999998877 455578899988
Q ss_pred CCCcHHHHH
Q 000888 1137 DGYSGSDLK 1145 (1237)
Q Consensus 1137 ~GySgaDL~ 1145 (1237)
+|--.+.|-
T Consensus 219 ~~nLRrAll 227 (351)
T KOG2035|consen 219 NRNLRRALL 227 (351)
T ss_pred cccHHHHHH
Confidence 876666553
No 221
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.67 E-value=6e-07 Score=103.88 Aligned_cols=65 Identities=38% Similarity=0.570 Sum_probs=44.4
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccc
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSI 1006 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg--~~fi~Id~seL 1006 (1237)
..+.++|+.+.++..--.+.. ...+. ...+++||.||||||||+||-++|++|| .||+.++.+++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~m-------Ik~~K--~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDM-------IKEGK--IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHH-------HHTT----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccccChHHHHHHHHHHHHH-------Hhccc--ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 456889999999886655543 11121 1237899999999999999999999995 78876666554
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=5.7e-07 Score=104.73 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=104.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccccHHHHHHHHH
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 1023 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------------------------fi~Id~seL~s~~~G~se~~I~~lF~ 1023 (1237)
+.+..+||+||+|+||+++|.++|+.+-+. ++.+....- .. .-.-..++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHH
Confidence 445789999999999999999999988321 222221100 00 011234555544
Q ss_pred HHH----hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhcccc
Q 000888 1024 LAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1099 (1237)
Q Consensus 1024 ~A~----k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~ 1099 (1237)
.+. .....|++||++|.|- ....|.||..++. ++.++++|.+|+.++.|.|.+++|+ ..
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~ 161 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RL 161 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-cc
Confidence 443 3345799999999882 3455677777765 4567899999999999999999999 47
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHH
Q 000888 1100 LMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1144 (1237)
Q Consensus 1100 I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL 1144 (1237)
+.|+.|+.++..+.+... .++. ......+++.+.|-.+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 899999988888777542 2322 3345567778877665544
No 223
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.67 E-value=6e-08 Score=114.02 Aligned_cols=200 Identities=24% Similarity=0.366 Sum_probs=116.1
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSI 1006 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e----Lg~~fi~Id~seL 1006 (1237)
...+.+++|...-.+.+++.+.. +. .-..+||++|++||||+.+|++|... .+.||+.++|+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~a-----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------YA-----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------hC-----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34567888887777777776643 11 11246999999999999999999643 3679999999887
Q ss_pred ccc-----cccccH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHH-hcCCcccCC
Q 000888 1007 TSK-----WFGEGE-------KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN-WDGLRTKDT 1073 (1237)
Q Consensus 1007 ~s~-----~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~-ldgl~~~~~ 1073 (1237)
... .+|..+ ..-..+|+.|.. ++||+|||..| ....++.+-+++++-... +-+ .....
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~-~~~~~ 212 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGG-SQPRP 212 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCC-CCCcC
Confidence 332 222221 112335665555 89999999988 333344333333331111 111 12234
Q ss_pred ccEEEEEecCCCCCCcHH------HHh-hccccccCCCCCHHHHHH----HHHHHH----hhCCCCChhh----HHHHHH
Q 000888 1074 ERILVLAATNRPFDLDEA------VIR-RLPRRLMVNLPDAPNRAK----ILQVIL----AKEDLSPDVD----FDAIAN 1134 (1237)
Q Consensus 1074 ~~VlVIaTTN~p~~Ld~a------Llr-RFd~~I~v~~Pd~eeR~e----ILk~~L----~~~~l~~d~d----l~~LA~ 1134 (1237)
..|.+|++|+. .++.. +.+ ++. +.+.+|...+|.. +++.++ ++.+.....+ ...|-.
T Consensus 213 ~dVRli~AT~~--~l~~~~~~g~dl~~rl~~--~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 213 VDVRLICATTE--DLEEAVLAGADLTRRLNI--LTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA 288 (403)
T ss_pred CCceeeecccc--CHHHHHHhhcchhhhhcC--ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 67888988875 33333 333 443 4556666666643 333333 3444332222 222323
Q ss_pred Hc-CCCcHHHHHHHHHHHHHHHH
Q 000888 1135 MT-DGYSGSDLKNLCVTAAHRPI 1156 (1237)
Q Consensus 1135 ~T-~GySgaDL~~L~~~Aa~~ai 1156 (1237)
.. .| +.++|+++++.++..+.
T Consensus 289 y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 289 YDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred CCCCC-cHHHHHHHHHHHHHHhc
Confidence 22 33 67899999888887653
No 224
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.66 E-value=1.4e-07 Score=109.39 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=109.2
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--
Q 000888 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 1008 (1237)
Q Consensus 934 f~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s-- 1008 (1237)
++++.|.....+.+.+.+.... +....|||+|++||||+++|++|-... +.+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 4567777766666666664311 112469999999999999999997665 57999999987632
Q ss_pred ---ccccccHHH-------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------cc
Q 000888 1009 ---KWFGEGEKY-------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1071 (1237)
Q Consensus 1009 ---~~~G~se~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-------~~ 1071 (1237)
.++|..... ....|..| ..+.|||||||.|- ..+...|+..++... ..
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~------------~~~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP------------MLVQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC------------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 122211100 01123333 34899999999882 122233333333211 01
Q ss_pred CCccEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----CCCC-----ChhhHHH
Q 000888 1072 DTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS-----PDVDFDA 1131 (1237)
Q Consensus 1072 ~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e----ILk~~L~~----~~l~-----~d~dl~~ 1131 (1237)
...++.||+||+.. ..+.+.+..||. .+.+..|...+|.+ +++.++.. .+.. +...+..
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 12357888888763 356677777883 35566666666644 44444422 1111 2222344
Q ss_pred HHHHcCCCcHHHHHHHHHHHHH
Q 000888 1132 IANMTDGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1132 LA~~T~GySgaDL~~L~~~Aa~ 1153 (1237)
|.+..---+.++|+++++.|+.
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHH
Confidence 4444433456677777766654
No 225
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.65 E-value=8.4e-08 Score=114.62 Aligned_cols=202 Identities=20% Similarity=0.254 Sum_probs=118.1
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 1008 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s- 1008 (1237)
...+++|.....+.+.+.+... ......|||+|++||||..+|++|-+.. +.||+.++|..+..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV------------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4567788888888887777531 1122469999999999999999998776 67999999977632
Q ss_pred ----ccccccHHH----H---HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEE
Q 000888 1009 ----KWFGEGEKY----V---KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1077 (1237)
Q Consensus 1009 ----~~~G~se~~----I---~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~Vl 1077 (1237)
..+|..... . ...|+.|.. +.||||||..| ....+.-+-+++++--..--|....-+-+|-
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 234432211 1 124555555 89999999988 2222333333333211011111112235788
Q ss_pred EEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----CCCC-ChhhHHHHHHHc---CC
Q 000888 1078 VLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS-PDVDFDAIANMT---DG 1138 (1237)
Q Consensus 1078 VIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e----ILk~~L~~----~~l~-~d~dl~~LA~~T---~G 1138 (1237)
||++||.. ..+-+.+.-|+ .++.+..|...+|.+ ++++++++ .+.. ..+.-+.++.+. --
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 357 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWP 357 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999973 23344555566 577888888888875 44444432 2221 222333333222 22
Q ss_pred CcHHHHHHHHHHHHHHH
Q 000888 1139 YSGSDLKNLCVTAAHRP 1155 (1237)
Q Consensus 1139 ySgaDL~~L~~~Aa~~a 1155 (1237)
-+.++|.|+++.++...
T Consensus 358 GNVREL~N~ver~~il~ 374 (464)
T COG2204 358 GNVRELENVVERAVILS 374 (464)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 24566666666665443
No 226
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.65 E-value=6.4e-07 Score=109.21 Aligned_cols=146 Identities=25% Similarity=0.318 Sum_probs=87.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 995 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---------------- 995 (1237)
..|.++.|+..+++.+.-.+. ...+++|.||||+|||++|++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999888776654432 125799999999999999999987541
Q ss_pred ------------CcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 996 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 996 ------------~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
.||....++......+|.....-...+..|. .++|||||++.+- ..+++.|+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~------------~~~~~~L~~ 317 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFK------------RSVLDALRE 317 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCC------------HHHHHHHHH
Confidence 1222211111111111111000111233333 3899999999772 223333333
Q ss_pred HhcCC---------cccCCccEEEEEecCCC-----C------------------CCcHHHHhhccccccCCCCCHH
Q 000888 1064 NWDGL---------RTKDTERILVLAATNRP-----F------------------DLDEAVIRRLPRRLMVNLPDAP 1108 (1237)
Q Consensus 1064 ~ldgl---------~~~~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRFd~~I~v~~Pd~e 1108 (1237)
.|+.. ......++.+|+++|.. . .+...+++|||..+.++.++.+
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 33321 11123578999999862 1 4778899999999988876554
No 227
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.65 E-value=1.7e-07 Score=115.08 Aligned_cols=194 Identities=19% Similarity=0.299 Sum_probs=113.4
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 1000 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e-----------Lg~~fi~ 1000 (1237)
.+|+++.|.....+.+++.+.. +. .....|||+|++||||+++|++|-+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------YA-----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 4578899988888887777653 11 11246999999999999999999877 3679999
Q ss_pred Eeccccccc-----cccccHHH--------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcC
Q 000888 1001 ISMSSITSK-----WFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1067 (1237)
Q Consensus 1001 Id~seL~s~-----~~G~se~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldg 1067 (1237)
++|..+... .+|..+.. -..+|+.|. .+.||||||+.|- . .+...|+..++.
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp-----~-------~~Q~kLl~~L~e 348 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMP-----L-------PLQTRLLRVLEE 348 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCC-----H-------HHHHHHHhhhhc
Confidence 999876322 22221111 112455443 3799999999882 1 222233333322
Q ss_pred Cc-------ccCCccEEEEEecCCCC-------CCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----CCCCC
Q 000888 1068 LR-------TKDTERILVLAATNRPF-------DLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLSP 1125 (1237)
Q Consensus 1068 l~-------~~~~~~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~v~~Pd~eeR~e----ILk~~L~~----~~l~~ 1125 (1237)
-. ..-..++-||++|+..- .+.+.+..|+ ..+.+..|...+|.+ +++.++.+ .+..-
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 11 11123567888887631 2333444455 346667777766654 45555543 22221
Q ss_pred hhh-H-------HHHHHHcCCCcHHHHHHHHHHHHH
Q 000888 1126 DVD-F-------DAIANMTDGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1126 d~d-l-------~~LA~~T~GySgaDL~~L~~~Aa~ 1153 (1237)
..+ + ..|....---+.++|+++++.++.
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 111 1 223333333467888888887765
No 228
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=4.6e-07 Score=112.79 Aligned_cols=193 Identities=14% Similarity=0.197 Sum_probs=115.6
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE-ecc---cc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMS---SI 1006 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~I-d~s---eL 1006 (1237)
..+++++.+.++..+.|+.++..... ...+...++|+||||+|||++++.+|++++..++.. +.. ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~---------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL---------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc---------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 35789999999999988887753211 022334599999999999999999999998765441 111 00
Q ss_pred cc---------ccc---cccHHHHHHHHHHHHh----------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH-
Q 000888 1007 TS---------KWF---GEGEKYVKAVFSLASK----------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV- 1063 (1237)
Q Consensus 1007 ~s---------~~~---G~se~~I~~lF~~A~k----------~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~- 1063 (1237)
.. ..+ ......++.++..+.. ....|||||||+.++.. . .. .++.++.
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~~----~lq~lLr~ 221 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----TR----ALHEILRW 221 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----HH----HHHHHHHH
Confidence 00 000 1122334445554432 24579999999987532 1 12 2333333
Q ss_pred HhcCCcccCCccEEEEEecC-CCC--------------CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCC---
Q 000888 1064 NWDGLRTKDTERILVLAATN-RPF--------------DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDL--- 1123 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN-~p~--------------~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l--- 1123 (1237)
.... ..++.+|++++ .+. .|.+++++ |. .+|.|++....+..+.|+.++..+..
T Consensus 222 ~~~e-----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 222 KYVS-----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred Hhhc-----CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 1111 12233333332 221 13467776 44 46899999999999888888876422
Q ss_pred -----CChhhHHHHHHHcCCCcHHHHHHH
Q 000888 1124 -----SPDVDFDAIANMTDGYSGSDLKNL 1147 (1237)
Q Consensus 1124 -----~~d~dl~~LA~~T~GySgaDL~~L 1147 (1237)
.....+..|+....|-....|..|
T Consensus 296 ~~~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred cccccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 123457778887777666665444
No 229
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.61 E-value=1.9e-07 Score=114.46 Aligned_cols=194 Identities=21% Similarity=0.302 Sum_probs=110.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1008 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s 1008 (1237)
.+|+++.|.....+.+.+.+.. +. .....|||+|++||||+++|++|-+.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------YA-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688899988888877777653 11 112469999999999999999998765 67999999987632
Q ss_pred -----ccccccHHH--------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc------
Q 000888 1009 -----KWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------ 1069 (1237)
Q Consensus 1009 -----~~~G~se~~--------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~------ 1069 (1237)
..+|..+.. -..+|+.|. .+.||||||+.|- ...+ ..|+..++.-.
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp-----~~~Q-------~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP-----LPLQ-------TRLLRVLEEREVVRVGG 341 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC-----HHHH-------HHHHHHHhcCcEEecCC
Confidence 222221111 122444443 3799999999882 2222 22333332210
Q ss_pred -ccCCccEEEEEecCCCC-------CCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhC----CCC-ChhhHHH-
Q 000888 1070 -TKDTERILVLAATNRPF-------DLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKE----DLS-PDVDFDA- 1131 (1237)
Q Consensus 1070 -~~~~~~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~v~~Pd~eeR~e----ILk~~L~~~----~l~-~d~dl~~- 1131 (1237)
.....++-+|++|+..- .+.+.+..|+ ..+.+..|...+|.+ +++.++.+. .+. ....+..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 01123457888887641 2333444455 245666676666654 445555432 111 1111222
Q ss_pred ------HHHHcCCCcHHHHHHHHHHHHH
Q 000888 1132 ------IANMTDGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1132 ------LA~~T~GySgaDL~~L~~~Aa~ 1153 (1237)
|....---+.++|+++++.++.
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i 448 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLAL 448 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 3333333356677777776654
No 230
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.60 E-value=1.5e-07 Score=116.18 Aligned_cols=195 Identities=18% Similarity=0.219 Sum_probs=115.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1008 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s 1008 (1237)
.+++++.|.....+.+.+.+...- .....|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 567889998888877777765311 112469999999999999999999876 57999999987632
Q ss_pred cc-----ccccHHHH-------HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcc------
Q 000888 1009 KW-----FGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------ 1070 (1237)
Q Consensus 1009 ~~-----~G~se~~I-------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~------ 1070 (1237)
.+ +|...... ...|+.| ..++||||||+.|- ..+...|+..++....
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~------------~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS------------PAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC------------HHHHHHHHHHHhcCcEEECCCC
Confidence 21 11110000 0012222 35799999999882 1222333333332110
Q ss_pred -cCCccEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHHHH----HHHHHHHHhhC----CC---CChhhHHH
Q 000888 1071 -KDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAKE----DL---SPDVDFDA 1131 (1237)
Q Consensus 1071 -~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR----~eILk~~L~~~----~l---~~d~dl~~ 1131 (1237)
....++.+|++|+.. ..+.+.+..|+. .+.+..|...+| ..+++.++... +. .++..+..
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 404 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRV 404 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 112357888888753 245566666773 344455544444 44555555432 11 12333455
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHH
Q 000888 1132 IANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1132 LA~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
|....-.-+.++|+++++.|+..
T Consensus 405 L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 405 LMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HHhCCCCChHHHHHHHHHHHHHh
Confidence 55554444778888888887754
No 231
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.1e-06 Score=101.54 Aligned_cols=173 Identities=18% Similarity=0.194 Sum_probs=112.1
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------EEEeccc
Q 000888 939 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------INISMSS 1005 (1237)
Q Consensus 939 Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f-------------i~Id~se 1005 (1237)
-+..+.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+.- ..-+.++
T Consensus 8 W~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD 74 (319)
T PRK08769 8 WQQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD 74 (319)
T ss_pred cHHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC
Confidence 345666667666542 23346799999999999999999998873210 0000111
Q ss_pred cccc-----ccc------ccHHHHHHHHHHHHhcC----CcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcc
Q 000888 1006 ITSK-----WFG------EGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1070 (1237)
Q Consensus 1006 L~s~-----~~G------~se~~I~~lF~~A~k~~----PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~ 1070 (1237)
+.-- ..| -.-..|+.+.+.+...+ ..|++||++|.|- ....|.||..++.
T Consensus 75 ~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE--- 139 (319)
T PRK08769 75 LQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEE--- 139 (319)
T ss_pred EEEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhC---
Confidence 1100 001 11334566655554433 3699999999882 3455667766665
Q ss_pred cCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHH
Q 000888 1071 KDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKN 1146 (1237)
Q Consensus 1071 ~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~ 1146 (1237)
+..++++|.+|+.++.|-|.+++|+ ..+.|..|+.++....|.. .++. ..+...++..+.|..+..+..
T Consensus 140 -Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~----~~~~-~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 140 -PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA----QGVS-ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH----cCCC-hHHHHHHHHHcCCCHHHHHHH
Confidence 3456778888899999999999999 7789999999887777754 2332 334556778888866655543
No 232
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.60 E-value=4.4e-07 Score=110.68 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=131.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccccc----------ccccccH------HHHHHHHHH-
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITS----------KWFGEGE------KYVKAVFSL- 1024 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~Id~seL~s----------~~~G~se------~~I~~lF~~- 1024 (1237)
.+.+.|-||||||.++..+-++| .+.|+.|++-.+.+ .+.|+.. ..+..-|..
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 69999999999999999998866 47888888755532 1112211 112222221
Q ss_pred HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHH----HHhhcc-cc
Q 000888 1025 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEA----VIRRLP-RR 1099 (1237)
Q Consensus 1025 A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~a----LlrRFd-~~ 1099 (1237)
..+..++||+|||+|.|+.+. +..|..+-..+...+.+++||+.+|..+....- +.+|++ .+
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-------------QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-------------QDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-------------HHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 123457899999999997543 233444445555667899999999876543332 233654 46
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000888 1100 LMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD--LKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPA 1177 (1237)
Q Consensus 1100 I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaD--L~~L~~~Aa~~aireil~~e~~~~~~a~~e~~~~ 1177 (1237)
+.|.+++.++..+|+...+...........+-+|+.....+|.. -..+|++|+..+-.+.. . +
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~-~-----------~--- 635 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNV-K-----------G--- 635 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcc-c-----------c---
Confidence 89999999999999999997764444444555566555444422 33667777765443321 0 0
Q ss_pred CCCCCCCCCccccHHHHHHHHHHhccCcc
Q 000888 1178 PALSGCADIRPLNMDDFKYAHERVCASVS 1206 (1237)
Q Consensus 1178 ~~~~~~~~~r~Lt~eDF~~AL~~v~pS~s 1206 (1237)
.......|++-|+.+|+..+..+.-
T Consensus 636 ----k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 636 ----KLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred ----cccccceeehHHHHHHHHHHhhhhH
Confidence 1112246899999999999876654
No 233
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.58 E-value=3.1e-07 Score=112.76 Aligned_cols=194 Identities=17% Similarity=0.230 Sum_probs=114.6
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-
Q 000888 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1009 (1237)
Q Consensus 934 f~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~- 1009 (1237)
+.+++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 456778777777777766531 1112469999999999999999998876 579999999876321
Q ss_pred ----cccccHHH-------HHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------cc
Q 000888 1010 ----WFGEGEKY-------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1071 (1237)
Q Consensus 1010 ----~~G~se~~-------I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-------~~ 1071 (1237)
.+|..... ....|+.| ..+.|||||||.|- ..+...|+..++... ..
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP------------LALQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC------------HHHHHHHHHHHhcCCEeeCCCCcc
Confidence 22211110 01124433 34899999999882 122233333332211 01
Q ss_pred CCccEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----CCCC----ChhhHHHH
Q 000888 1072 DTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS----PDVDFDAI 1132 (1237)
Q Consensus 1072 ~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e----ILk~~L~~----~~l~----~d~dl~~L 1132 (1237)
...++-||++|+.. ..+.+.+..|+ ..+.+..|...+|.+ +++.++++ .+.. ....+..|
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 12367888888763 23555666666 345566777666654 34444432 1111 22334455
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 000888 1133 ANMTDGYSGSDLKNLCVTAAHRP 1155 (1237)
Q Consensus 1133 A~~T~GySgaDL~~L~~~Aa~~a 1155 (1237)
.+..---+.++|++++..|+..+
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhc
Confidence 55544457788888888877654
No 234
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.56 E-value=7.3e-07 Score=113.25 Aligned_cols=195 Identities=20% Similarity=0.300 Sum_probs=114.8
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1008 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s 1008 (1237)
..|+++.|.....+.+.+.+... . .....|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-------a-----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-------A-----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 35778889888777777666531 1 112469999999999999999998865 67999999987632
Q ss_pred -----ccccccHH-------HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------
Q 000888 1009 -----KWFGEGEK-------YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------- 1069 (1237)
Q Consensus 1009 -----~~~G~se~-------~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~------- 1069 (1237)
.++|.... .....|+.| ..++||||||+.|- ..+...|+..++...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~------------~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMP------------LELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCC------------HHHHHHHHHHHHhCCEEeCCCC
Confidence 22232110 011233433 34899999999882 122223333332211
Q ss_pred ccCCccEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----CCC----CChhhHH
Q 000888 1070 TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDL----SPDVDFD 1130 (1237)
Q Consensus 1070 ~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e----ILk~~L~~----~~l----~~d~dl~ 1130 (1237)
.....++.+|++|+.. ..+...+..|+ ..+.+..|...+|.+ +++.++.+ .+. .+...+.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 1112467888888763 13334455455 245567777777755 44444432 111 1233345
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHH
Q 000888 1131 AIANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1131 ~LA~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
.|.+..---+.++|+++++.|+..
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHh
Confidence 555554444677888888777754
No 235
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=8e-07 Score=103.60 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=101.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------------------EEEEecccccc--------------
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------------------FINISMSSITS-------------- 1008 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~-------------------------fi~Id~seL~s-------------- 1008 (1237)
+-+..+||+||+|+||+++|+++|+.+.+. ++.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 344789999999999999999999988442 11221110000
Q ss_pred cccc---------ccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCcc
Q 000888 1009 KWFG---------EGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 1075 (1237)
Q Consensus 1009 ~~~G---------~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~ 1075 (1237)
.-.| -.-..++.+...+.. ....|++||++|.|- ....|.||..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 0000 112345555554432 234699999999882 3455777777765 4567
Q ss_pred EEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHH
Q 000888 1076 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1144 (1237)
Q Consensus 1076 VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL 1144 (1237)
+++|.+|+.++.|.|.+++|+ ..+.|++|+.++..++|... +... ...++..+.|-.+..+
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~----~~~~---~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ----GVAD---ADALLAEAGGAPLAAL 223 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc----CCCh---HHHHHHHcCCCHHHHH
Confidence 889999999999999999999 78999999999988888653 2222 2334556666554444
No 236
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.55 E-value=3.2e-07 Score=108.56 Aligned_cols=201 Identities=19% Similarity=0.279 Sum_probs=124.1
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~ 1007 (1237)
...+.+|+|......++.+.|.. .. +....|||.|.+||||..+|++|-+.. ..||+.++|+.+-
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-------VA-----~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-------VA-----KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-------Hh-----cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 56677888888888877777753 11 122479999999999999999998877 6899999997762
Q ss_pred -----cccccccHHHH-------HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCccc--CC
Q 000888 1008 -----SKWFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK--DT 1073 (1237)
Q Consensus 1008 -----s~~~G~se~~I-------~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~--~~ 1073 (1237)
+..+|.-..+. +.-|+.|.. +-||+|||..| ....+.-+-+++|+- .+..+... -.
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----PL~lQaKLLRvLQeg--EieRvG~~r~ik 356 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----PLALQAKLLRVLQEG--EIERVGGDRTIK 356 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----CHHHHHHHHHHHhhc--ceeecCCCceeE
Confidence 33334322211 123555544 79999999987 334444444555542 22322221 23
Q ss_pred ccEEEEEecCCCCCCcHHHHh-hcc-------ccccCCCCCHHHHHH----HHHHHH----hhCCCC----ChhhHHHHH
Q 000888 1074 ERILVLAATNRPFDLDEAVIR-RLP-------RRLMVNLPDAPNRAK----ILQVIL----AKEDLS----PDVDFDAIA 1133 (1237)
Q Consensus 1074 ~~VlVIaTTN~p~~Ld~aLlr-RFd-------~~I~v~~Pd~eeR~e----ILk~~L----~~~~l~----~d~dl~~LA 1133 (1237)
..|-|||+||+ +|..++.. +|. .++.+..|...+|.+ +.+.++ .+.+.. +...++.|.
T Consensus 357 VDVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 357 VDVRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 56899999998 45555554 331 234445566666543 223333 333331 223344455
Q ss_pred HHcCCCcHHHHHHHHHHHHHHH
Q 000888 1134 NMTDGYSGSDLKNLCVTAAHRP 1155 (1237)
Q Consensus 1134 ~~T~GySgaDL~~L~~~Aa~~a 1155 (1237)
++.---+.++|+++++.|+..+
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 5444447789999999999855
No 237
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.55 E-value=4.2e-07 Score=111.85 Aligned_cols=196 Identities=22% Similarity=0.288 Sum_probs=111.7
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~ 1007 (1237)
..+|+++.|.....+.+.+.+.. +.. .. ..|||+|++||||+++|+++-... ..+|+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~-------~A~--~~---~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARK-------LAM--LD---APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHH-------HhC--CC---CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45788898887766666655532 111 11 359999999999999999986655 4799999998764
Q ss_pred cc-----cccccH-------HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCC--cc---
Q 000888 1008 SK-----WFGEGE-------KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL--RT--- 1070 (1237)
Q Consensus 1008 s~-----~~G~se-------~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl--~~--- 1070 (1237)
.. .+|... ..-..+|+.|. .+.||||||+.|- ...+ ..|+..+... ..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~-----~~~Q-------~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS-----PRMQ-------AKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC-----HHHH-------HHHHHHHhcCCcccCCC
Confidence 31 122111 00112344443 4899999999882 1112 2233333221 00
Q ss_pred --cCCccEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHh----hCCCC----ChhhH
Q 000888 1071 --KDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILA----KEDLS----PDVDF 1129 (1237)
Q Consensus 1071 --~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e----ILk~~L~----~~~l~----~d~dl 1129 (1237)
....++.||++|+.. ..+.+.+..|+. .+.+..|...+|.+ +++.++. +.+.. +...+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 112357788888763 235566777773 36666676666653 3333333 22221 22223
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHH
Q 000888 1130 DAIANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1130 ~~LA~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
..|.+..-.-+.++|++++..|+..
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 4444443333667888887777754
No 238
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.55 E-value=4.1e-07 Score=95.36 Aligned_cols=133 Identities=22% Similarity=0.305 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 000888 939 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 996 (1237)
Q Consensus 939 Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~---------------------- 996 (1237)
|++++.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888888763 234467999999999999999999998721
Q ss_pred -cEEEEeccccccccccccHHHHHHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCccc
Q 000888 997 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1071 (1237)
Q Consensus 997 -~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~ 1071 (1237)
.++.+....... .-.-..++.+...+... ...|++|||+|.|- ....+.||..|+.-
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEep--- 129 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEP--- 129 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHST---
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCC---
Confidence 233343322100 11234556665555433 45699999999882 44556677777653
Q ss_pred CCccEEEEEecCCCCCCcHHHHhhccccccCCC
Q 000888 1072 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1072 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~ 1104 (1237)
+.++.+|.+|+.++.|-+.+++|+ ..+.|+.
T Consensus 130 -p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 130 -PENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp -TTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred -CCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 467899999999999999999998 5555543
No 239
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=3.6e-06 Score=99.13 Aligned_cols=236 Identities=22% Similarity=0.264 Sum_probs=145.3
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc--
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS-- 1008 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s-- 1008 (1237)
.+.|-+.-+..+++++..++. .....++.+.|.||||||.+...+...+ ....++++|.++..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 567888888888888876543 2233689999999999999888776555 33557888865411
Q ss_pred ----cccc--------c-cHHHHHHHHHHH-Hhc-CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCC
Q 000888 1009 ----KWFG--------E-GEKYVKAVFSLA-SKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 1073 (1237)
Q Consensus 1009 ----~~~G--------~-se~~I~~lF~~A-~k~-~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~ 1073 (1237)
+..+ . .+......|+.- ... .+-||++||+|.|+.+.. .++.++ -+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~l-Fewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TVLYTL-FEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ceeeee-hhcccC---Cc
Confidence 1111 1 111112223221 122 366899999999973331 122221 234444 56
Q ss_pred ccEEEEEecCCCCCCcHHHHh---h---ccccccCCCCCHHHHHHHHHHHHhhCCCCCh--hhHHHHHHHcCCCcHHHHH
Q 000888 1074 ERILVLAATNRPFDLDEAVIR---R---LPRRLMVNLPDAPNRAKILQVILAKEDLSPD--VDFDAIANMTDGYSGSDLK 1145 (1237)
Q Consensus 1074 ~~VlVIaTTN~p~~Ld~aLlr---R---Fd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d--~dl~~LA~~T~GySgaDL~ 1145 (1237)
.++++|+.+|..+.-|..+-+ | -+..+.|++++.++..+||+..+........ ..++-+|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 889999999987655544433 2 2457899999999999999999987654433 346778888888887 766
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCc
Q 000888 1146 NL---CVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 1205 (1237)
Q Consensus 1146 ~L---~~~Aa~~aireil~~e~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~pS~ 1205 (1237)
.+ |+.|.. +.+.+.+... .+. .+..........|-++++-.++.++..+.
T Consensus 367 kaLdv~R~aiE-----I~E~e~r~~~---~~~--l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 367 KALDVCRRAIE-----IAEIEKRKIL---DDP--LSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHH-----HHHHHHhhcc---ccC--CCCCCCcccccccchHHHHHHhhhhccCh
Confidence 54 444443 3333332211 111 11111122226788999999998886554
No 240
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2.4e-06 Score=98.78 Aligned_cols=166 Identities=15% Similarity=0.119 Sum_probs=110.7
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 000888 939 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 996 (1237)
Q Consensus 939 Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~---------------------- 996 (1237)
-+....+.|...+.. .+-+..+||+||.|+||+.+|+++|+.+-+
T Consensus 7 Wl~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~H 73 (319)
T PRK06090 7 WLVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNH 73 (319)
T ss_pred cHHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCC
Confidence 456667777766642 344468999999999999999999998732
Q ss_pred -cEEEEeccccccccccccHHHHHHHHHHHHh----cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCccc
Q 000888 997 -NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1071 (1237)
Q Consensus 997 -~fi~Id~seL~s~~~G~se~~I~~lF~~A~k----~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~ 1071 (1237)
.|+.+.... .++. -.-..++.+...+.. ....|++||++|.|- ....|.||..++.
T Consensus 74 PD~~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE---- 134 (319)
T PRK06090 74 PDLHVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE---- 134 (319)
T ss_pred CCEEEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----
Confidence 122232211 0011 112345555444433 235799999999882 3455677777765
Q ss_pred CCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHH
Q 000888 1072 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 1144 (1237)
Q Consensus 1072 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL 1144 (1237)
++.++++|.+|+.++.|-|.+++|+ ..+.|+.|+.++..+.+... +.. ....+++...|-.+..+
T Consensus 135 Pp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~~----~~~---~~~~~l~l~~G~p~~A~ 199 (319)
T PRK06090 135 PAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKGQ----GIT---VPAYALKLNMGSPLKTL 199 (319)
T ss_pred CCCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHHc----CCc---hHHHHHHHcCCCHHHHH
Confidence 3567888999999999999999999 68899999998888877542 222 12455666666555443
No 241
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.50 E-value=9.4e-07 Score=111.34 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=112.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1008 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s 1008 (1237)
.+|+++.|.....+.+.+.+.... +....|||+|++||||+++|++|.+.. +.+|+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457788887777666666554211 112359999999999999999998876 47999999987632
Q ss_pred -----ccccccH----HHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcc-------cC
Q 000888 1009 -----KWFGEGE----KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KD 1072 (1237)
Q Consensus 1009 -----~~~G~se----~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~-------~~ 1072 (1237)
.++|... ......|+.| ..++||||||+.|- . .+...|+..++.-.. ..
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----~-------~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----P-------ELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----H-------HHHHHHHHHHhcCcEEeCCCCceE
Confidence 2333210 0000123322 35899999999882 1 222233333322110 01
Q ss_pred CccEEEEEecCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhC----C--C-CChhhHHHHHH
Q 000888 1073 TERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKE----D--L-SPDVDFDAIAN 1134 (1237)
Q Consensus 1073 ~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~eeR~e----ILk~~L~~~----~--l-~~d~dl~~LA~ 1134 (1237)
..++.||+||+.. ..+.+.+.-|+ ..+.+..|...+|.+ +++.++... + + ..+..+..|.+
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 1257788888863 23344444455 345667777777743 444444322 1 1 12333455555
Q ss_pred HcCCCcHHHHHHHHHHHHHH
Q 000888 1135 MTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1135 ~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
..-.-+.++|+++++.|+..
T Consensus 534 y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALS 553 (638)
T ss_pred CCCCChHHHHHHHHHHHHHh
Confidence 54344677888888877653
No 242
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.49 E-value=2.1e-07 Score=118.04 Aligned_cols=184 Identities=19% Similarity=0.186 Sum_probs=105.8
Q ss_pred HHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhh---cC----CCCCCCceEEEEcCCCChHHHH
Q 000888 914 NEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTML 986 (1237)
Q Consensus 914 ~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~---k~----~l~kP~~gVLL~GPPGTGKT~L 986 (1237)
.++...+...+.| .|.|++.+|+.+.-.+..-........ .+ ...+...+|||.|+||||||.+
T Consensus 438 p~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqL 508 (915)
T PTZ00111 438 PMIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQL 508 (915)
T ss_pred HHHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHH
Confidence 3444556666666 678999999888666654322110000 00 1123335899999999999999
Q ss_pred HHHHHHHhC-------CcEEEEecccccccccc--ccHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHH
Q 000888 987 AKAVATEAG-------ANFINISMSSITSKWFG--EGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRK 1056 (1237)
Q Consensus 987 AkAIA~eLg-------~~fi~Id~seL~s~~~G--~se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~ 1056 (1237)
|+++++... .++..+.+..... +.+ ..+..+ ...+..| ..++++|||++.+- ...+ .
T Consensus 509 Ar~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms-----~~~Q----~ 575 (915)
T PTZ00111 509 LHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCH-----NESR----L 575 (915)
T ss_pred HHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhCC-----HHHH----H
Confidence 999998652 3344433322211 000 000000 0011222 23799999999882 1122 2
Q ss_pred HHHHHHHH------hcCCcccCCccEEEEEecCCCC-------------CCcHHHHhhcccccc-CCCCCHHHHHHHHHH
Q 000888 1057 MKNEFMVN------WDGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLM-VNLPDAPNRAKILQV 1116 (1237)
Q Consensus 1057 il~eLL~~------ldgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~-v~~Pd~eeR~eILk~ 1116 (1237)
.+.++|.. -.|+...-+.++.||||+|..+ .|++.+++|||.++. ++.|+.+.-..|.++
T Consensus 576 aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 576 SLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred HHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHH
Confidence 22222211 1133333457899999999842 577999999987644 478888777777666
Q ss_pred HHh
Q 000888 1117 ILA 1119 (1237)
Q Consensus 1117 ~L~ 1119 (1237)
++.
T Consensus 656 I~~ 658 (915)
T PTZ00111 656 IAK 658 (915)
T ss_pred HHH
Confidence 654
No 243
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.47 E-value=2e-07 Score=78.55 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=44.3
Q ss_pred eEEcCCC-CcceeecCCCCccceEEEEEEecCCceEEEEEEeC-CCceEEcCeee
Q 000888 147 FTVGSSR-QCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIG-SKGLQVNGKNL 199 (1237)
Q Consensus 147 ~tvGr~~-~Cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s-~nGt~VNg~~~ 199 (1237)
++|||.. .||+.|.++.+|..||+|.....+ .++|+|++ +|||||||++|
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~~---~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGGG---RFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCCC---eEEEEECCCCCCeeECCEEC
Confidence 5899999 999999999999999999875432 57999999 89999999875
No 244
>PRK12377 putative replication protein; Provisional
Probab=98.45 E-value=1.1e-06 Score=98.21 Aligned_cols=111 Identities=20% Similarity=0.284 Sum_probs=67.6
Q ss_pred HHHHhcCcCCCCCCCccchhccc----cHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000888 917 EKRLLADVIPPSDIGVTFDDIGA----LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 992 (1237)
Q Consensus 917 e~~ll~~ii~~~~~~vtf~dI~G----le~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~ 992 (1237)
+..+....+++.....+|+++.. ...+....+.++.. |.. ...+++|+||||||||+||.|||+
T Consensus 56 ~~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~ 123 (248)
T PRK12377 56 EKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGN 123 (248)
T ss_pred HHHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHH
Confidence 34344555666666778888742 23334444444322 111 125899999999999999999999
Q ss_pred Hh---CCcEEEEecccccccccccc--HHHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 993 EA---GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 993 eL---g~~fi~Id~seL~s~~~G~s--e~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
++ +..++.++..++........ ......++... ....+|+|||+...
T Consensus 124 ~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 124 RLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 88 67788888777654321110 00111222222 35679999999754
No 245
>PRK08116 hypothetical protein; Validated
Probab=98.40 E-value=1.4e-06 Score=98.65 Aligned_cols=68 Identities=25% Similarity=0.476 Sum_probs=47.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc----cHHHHHHHHHHHHhcCCcEEEEccchh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE----GEKYVKAVFSLASKIAPSVIFVDEVDS 1040 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~----se~~I~~lF~~A~k~~PsILfIDEID~ 1040 (1237)
.+++|+|++|+|||+||.+||+++ +.+++.++..+++...... .......++.... ...+|+|||+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 579999999999999999999987 7888889887765432211 1111122332222 346999999963
No 246
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=9.9e-07 Score=101.56 Aligned_cols=93 Identities=14% Similarity=0.251 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhc--CCcchhhhHHHHHhcC-------CCcEEEEEeeccCCCccccCCCCCc
Q 000888 676 LINTLFEVVFSESRSCPFILFMKDAEKSIA--GNSDSYSTFKSRLEKL-------PDKVIVIGSHTHTDNRKEKSHPGGL 746 (1237)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~~~--~~~~~~~~lk~~L~~l-------~g~vvvIGst~~~d~~~~~~~~~~~ 746 (1237)
.|..||+-++. ...-++|||||.|-+++ ....+.....+.|..+ +..|+++=++|++.+
T Consensus 430 kiH~lFDWakk--S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd---------- 497 (630)
T KOG0742|consen 430 KIHKLFDWAKK--SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD---------- 497 (630)
T ss_pred HHHHHHHHHhh--cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc----------
Confidence 67778887765 26679999999999998 3344445566666444 347888888898864
Q ss_pred cccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhhh
Q 000888 747 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRD 813 (1237)
Q Consensus 747 ~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~~ 813 (1237)
.|.+++.||+..|+|+||-+|+|..+++..+++.
T Consensus 498 ---------------------------------lDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 498 ---------------------------------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred ---------------------------------hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 5888999999999999999999999998776653
No 247
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.37 E-value=3.8e-06 Score=98.93 Aligned_cols=224 Identities=23% Similarity=0.299 Sum_probs=136.0
Q ss_pred CHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 000888 912 TENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 991 (1237)
Q Consensus 912 ~~~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA 991 (1237)
...+|...+...+.| +|.|++++|+.|.-++.....+.. ..+--.+...+|+|.|.||+.|+.|.++|.
T Consensus 328 ~~~d~yekLa~SiAP---------EIyGheDVKKaLLLlLVGgvd~~~--~dGMKIRGdINicLmGDPGVAKSQLLkyi~ 396 (721)
T KOG0482|consen 328 AEGDFYEKLAASIAP---------EIYGHEDVKKALLLLLVGGVDKSP--GDGMKIRGDINICLMGDPGVAKSQLLKYIS 396 (721)
T ss_pred hcccHHHHHHHhhch---------hhccchHHHHHHHHHhhCCCCCCC--CCCceeecceeEEecCCCchhHHHHHHHHH
Confidence 344555556666665 789999999998877765332211 011112334579999999999999999999
Q ss_pred HHhCCcEEEEeccccccccccccHHHHH-----------HHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHH
Q 000888 992 TEAGANFINISMSSITSKWFGEGEKYVK-----------AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 1060 (1237)
Q Consensus 992 ~eLg~~fi~Id~seL~s~~~G~se~~I~-----------~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~e 1060 (1237)
+.....++..--.. .-+|-+....+ ..+-.|. .+|.+|||+|.+.. .+..++..++++
T Consensus 397 rlapRgvYTTGrGS---SGVGLTAAVmkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e-----~DRtAIHEVMEQ 465 (721)
T KOG0482|consen 397 RLAPRGVYTTGRGS---SGVGLTAAVMKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDE-----SDRTAIHEVMEQ 465 (721)
T ss_pred hcCcccceecCCCC---CccccchhhhcCCCCCeeEeccceEEEcc---CceEeehhhhhhhh-----hhhHHHHHHHHh
Confidence 87744443321110 01111111111 1122232 37999999999942 333444445443
Q ss_pred HH--HHhcCCcccCCccEEEEEecCCCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhhC--C
Q 000888 1061 FM--VNWDGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE--D 1122 (1237)
Q Consensus 1061 LL--~~ldgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~v-~~Pd~eeR~eILk~~L~~~--~ 1122 (1237)
-. ..--|+.+.-+.+.-|+|++|..+ .|+.++++|||..+.+ +.|+.+.-..+.+++.--+ .
T Consensus 466 QTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~ 545 (721)
T KOG0482|consen 466 QTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHE 545 (721)
T ss_pred hhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccC
Confidence 22 233466666678899999998742 6889999999976555 7898888887777755321 1
Q ss_pred CCCh-----hhH------HHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 000888 1123 LSPD-----VDF------DAIANMTDGYSGSDLKNLCVTAAHRPIK 1157 (1237)
Q Consensus 1123 l~~d-----~dl------~~LA~~T~GySgaDL~~L~~~Aa~~air 1157 (1237)
-.+. ++. -.+|+....+.+.+|...+..|-....+
T Consensus 546 ~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rr 591 (721)
T KOG0482|consen 546 EQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRR 591 (721)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 1111 222 2345666678888888777666544333
No 248
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.36 E-value=9.4e-07 Score=94.10 Aligned_cols=75 Identities=23% Similarity=0.436 Sum_probs=65.8
Q ss_pred eeeeCCeeEEcCCCCcceeecCCCCccceEEEEEEecCCceEEEEEEeCC-CceEEcCeeecCCCeeEccCCCEEEEeec
Q 000888 140 VPICASIFTVGSSRQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGS-KGLQVNGKNLKKNTSCELRSGDEVVFGSL 218 (1237)
Q Consensus 140 l~i~~~~~tvGr~~~Cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~-nGt~VNg~~~~k~~~~~L~~gDeI~f~~~ 218 (1237)
..+....+|+||+..+|++|.+..+|..||.|++..+. .||+|++| |||||||.++.. .+.|++||.|.|+..
T Consensus 84 ~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i~i~~~ 157 (191)
T COG1716 84 IVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLGGT 157 (191)
T ss_pred cccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcceEECCeEccC--cEEcCCCCEEEECcc
Confidence 33444689999999999999999999999999987555 68899986 999999999998 899999999999876
Q ss_pred CC
Q 000888 219 GN 220 (1237)
Q Consensus 219 ~~ 220 (1237)
..
T Consensus 158 ~~ 159 (191)
T COG1716 158 LA 159 (191)
T ss_pred ce
Confidence 54
No 249
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.36 E-value=3.5e-07 Score=96.57 Aligned_cols=99 Identities=20% Similarity=0.427 Sum_probs=61.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccccHH-------HHHHHHHHHHhcCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVIFV 1035 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~-----~~G~se~-------~I~~lF~~A~k~~PsILfI 1035 (1237)
..|||+|++||||+.+|++|-+.. +.||+.++|+.+... .+|.... .-..+|+.|.. ++|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEEee
Confidence 579999999999999999998866 579999999876322 2222110 11245666555 89999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHHHHHHhcCC-------cccCCccEEEEEecCC
Q 000888 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDTERILVLAATNR 1084 (1237)
Q Consensus 1036 DEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl-------~~~~~~~VlVIaTTN~ 1084 (1237)
|||+.|- ..+...|+..++.- ......++.||++|+.
T Consensus 100 d~I~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLP------------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhhH------------HHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 9999882 22223333333311 1112347899999986
No 250
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.33 E-value=1.9e-06 Score=103.71 Aligned_cols=168 Identities=19% Similarity=0.274 Sum_probs=98.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccccHHH-------HHHHHHHHHhcCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVIFV 1035 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~-----~G~se~~-------I~~lF~~A~k~~PsILfI 1035 (1237)
..++|+|++||||+++|+++.... +.+|+.++|..+...+ +|..... ....+. ....++|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEE
Confidence 469999999999999999998776 5789999998763221 1110000 000122 223579999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHHHHHHhcCC-------cccCCccEEEEEecCCC-------CCCcHHHHhhcccccc
Q 000888 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1101 (1237)
Q Consensus 1036 DEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl-------~~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1101 (1237)
|||+.|- . .+...|+..+... ......++.+|+||+.. ..+.+.+..|+ ..+.
T Consensus 240 ~~i~~l~-----~-------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~ 306 (445)
T TIGR02915 240 DEIGDLP-----L-------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEIS 306 (445)
T ss_pred echhhCC-----H-------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccce
Confidence 9999882 1 2222333333221 11112367888888764 34556666676 3466
Q ss_pred CCCCCHHHHHH----HHHHHHhh----CCC----CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000888 1102 VNLPDAPNRAK----ILQVILAK----EDL----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1102 v~~Pd~eeR~e----ILk~~L~~----~~l----~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
+..|...+|.+ +++.++.. .+. .....+..|....-.-+.++|+++++.|+..
T Consensus 307 i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 307 ITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred ecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 77777777765 44444432 111 1233345555554444677888888777753
No 251
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.32 E-value=7.5e-06 Score=95.56 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=47.4
Q ss_pred ch-hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 000888 934 FD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 1003 (1237)
Q Consensus 934 f~-dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------~fi~Id~ 1003 (1237)
|+ ++.|+++.+.++.+.+.... .+.....+-++|+||||+|||+||++||+.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 44 89999999998888775322 111223356999999999999999999999965 7777765
No 252
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.32 E-value=4.4e-06 Score=93.37 Aligned_cols=111 Identities=22% Similarity=0.321 Sum_probs=68.3
Q ss_pred HHHHhcCcCCCCCCCccchhcccc-HH---HHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000888 917 EKRLLADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 992 (1237)
Q Consensus 917 e~~ll~~ii~~~~~~vtf~dI~Gl-e~---vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~ 992 (1237)
+..+....+++.....+|+++... +. +...+++++.. +. ....+++|+|+||||||+|+.+||+
T Consensus 54 ~~~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~ 121 (244)
T PRK07952 54 QRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICN 121 (244)
T ss_pred HHHHHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHH
Confidence 333344456655567788887533 22 33333333321 11 1124899999999999999999999
Q ss_pred Hh---CCcEEEEeccccccccccc---cHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 993 EA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 993 eL---g~~fi~Id~seL~s~~~G~---se~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
++ +..++.++..++....... .......++.... ...+|+|||++..
T Consensus 122 ~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 122 ELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred HHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 98 7788888887776432221 1111223333332 4689999999865
No 253
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.32 E-value=1.2e-06 Score=109.72 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=73.7
Q ss_pred CCcceeeeC---CeeEEcCCCCcce-----eecCCCCccceEEEEEEecCCceEEEEEEeCC-CceEEcCee-----ecC
Q 000888 136 QNSNVPICA---SIFTVGSSRQCNF-----PLKDQAISAVLCKIKHVQSEGSAVAMVESIGS-KGLQVNGKN-----LKK 201 (1237)
Q Consensus 136 ~~~~l~i~~---~~~tvGr~~~Cd~-----~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~-nGt~VNg~~-----~~k 201 (1237)
..+.|.|+. --|+|||..+||+ +|.++.||+.|.+|..... ..||||+.| |||||||+. +..
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~----~~~~~Dl~S~nGT~v~~~~~~r~~~~p 620 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDG----AFFLMDLRSEHGTYVTDNEGRRYRATP 620 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECC----EEEEEECCCCCccEEeCCCCceEecCC
Confidence 345688844 5599999999997 9999999999999997632 379999998 999999988 556
Q ss_pred CCeeEccCCCEEEEeecCCeeEEEEec
Q 000888 202 NTSCELRSGDEVVFGSLGNHAYIFQQL 228 (1237)
Q Consensus 202 ~~~~~L~~gDeI~f~~~~~~ayiF~~l 228 (1237)
|..+.|++||+|-|+...+-+|--+.+
T Consensus 621 ~~~~~l~~~d~I~~g~~~~~~fr~~~~ 647 (668)
T PLN02927 621 NFPARFRSSDIIEFGSDKKAAFRVKVI 647 (668)
T ss_pred CCceEeCCCCEEEeCCCcceeEEEEee
Confidence 789999999999999877655655544
No 254
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.32 E-value=2.4e-06 Score=106.32 Aligned_cols=189 Identities=25% Similarity=0.316 Sum_probs=111.7
Q ss_pred HHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000888 914 NEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 993 (1237)
Q Consensus 914 ~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e 993 (1237)
.++...+...++| .|.|++.+|+.+.-.+...... ....+...+.--+|||.|.||+|||.|.+.+++.
T Consensus 274 ~~i~~~l~~SiaP---------sIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~ 342 (682)
T COG1241 274 PDIYDILIKSIAP---------SIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKL 342 (682)
T ss_pred CcHHHHHHHHhcc---------cccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhh
Confidence 3455556666666 5789999999987766543221 1111221222357999999999999999999998
Q ss_pred hCCcEEE-Eecc---cccccccccc---HHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHh
Q 000888 994 AGANFIN-ISMS---SITSKWFGEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1065 (1237)
Q Consensus 994 Lg~~fi~-Id~s---eL~s~~~G~s---e~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~l 1065 (1237)
+...++. -..+ .|........ +..+ ...+-.| ..+|++|||+|.+ +..+..++..++.+-...+
T Consensus 343 aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsI 414 (682)
T COG1241 343 APRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISI 414 (682)
T ss_pred CCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeee
Confidence 8544433 1111 1111100000 1100 0011122 3589999999987 3333333333333322222
Q ss_pred --cCCcccCCccEEEEEecCCCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhhC
Q 000888 1066 --DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE 1121 (1237)
Q Consensus 1066 --dgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~v-~~Pd~eeR~eILk~~L~~~ 1121 (1237)
.|+...-+.+.-|+|++|... +|++.+++|||.++.+ +.|+.+.-..+.++.+..+
T Consensus 415 aKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 415 AKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred cccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 233344457788899999854 6788999999987666 6788877777777766543
No 255
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.30 E-value=7.9e-06 Score=99.65 Aligned_cols=145 Identities=25% Similarity=0.334 Sum_probs=85.5
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEec-----
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISM----- 1003 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~----~fi~Id~----- 1003 (1237)
.|.++.|...+++.+.-.+ ....+++|+||+|+|||+|++.++..+.- ..+.+..
T Consensus 189 d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 6777888776666543211 12257999999999999999999876621 1111110
Q ss_pred -c-----ccccc-------------cccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHH
Q 000888 1004 -S-----SITSK-------------WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1064 (1237)
Q Consensus 1004 -s-----eL~s~-------------~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ 1064 (1237)
. .+... .+|.....-...+..|.. .+|||||++.+ . ..+++.|+..
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~-------~~~~~~L~~~ 317 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----E-------RRTLDALREP 317 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----C-------HHHHHHHHHH
Confidence 0 00000 111111111123444444 89999999876 1 2333334433
Q ss_pred hcCC---------cccCCccEEEEEecCCCC---------------------CCcHHHHhhccccccCCCCCHH
Q 000888 1065 WDGL---------RTKDTERILVLAATNRPF---------------------DLDEAVIRRLPRRLMVNLPDAP 1108 (1237)
Q Consensus 1065 ldgl---------~~~~~~~VlVIaTTN~p~---------------------~Ld~aLlrRFd~~I~v~~Pd~e 1108 (1237)
|+.- ......++.+|+|+|... .|...+++||+..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 3221 111246789999999742 4777999999999999988654
No 256
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.29 E-value=5.7e-06 Score=102.66 Aligned_cols=198 Identities=17% Similarity=0.169 Sum_probs=115.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccccccccc--HHHH--------HHHHHHHHhcCCcEEEEcc
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVIFVDE 1037 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eLg--~~fi~Id~seL~s~~~G~s--e~~I--------~~lF~~A~k~~PsILfIDE 1037 (1237)
..||||.|++|+||++++++++..+. .||+.+..+.-....+|.. +..+ ..++..|. ..||||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe 101 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAM 101 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecC
Confidence 36899999999999999999999984 5888877654444444442 1111 11222222 37999999
Q ss_pred chhhhcCCCCCchhHHHHHHHHHHHHHhc---------CCcccCCccEEEEEecCCC---CCCcHHHHhhccccccCCCC
Q 000888 1038 VDSMLGRRENPGEHEAMRKMKNEFMVNWD---------GLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLP 1105 (1237)
Q Consensus 1038 ID~L~~~r~~~~~~~a~~~il~eLL~~ld---------gl~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~~I~v~~P 1105 (1237)
+..+ . ..++..|+..++ +....-..+++||+|-|.. ..|.+.++.||+..+.+..|
T Consensus 102 ~n~~-----~-------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 102 AERL-----E-------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred cccC-----C-------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 9866 2 334444444443 3333445789999984432 45889999999999999988
Q ss_pred CHHHHHHHHHHHHhhCCCCChhhHHHHHHH--cCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCC
Q 000888 1106 DAPNRAKILQVILAKEDLSPDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPI---KEILEKEKKERAAAMAEGKPAPAL 1180 (1237)
Q Consensus 1106 d~eeR~eILk~~L~~~~l~~d~dl~~LA~~--T~GySgaDL~~L~~~Aa~~ai---reil~~e~~~~~~a~~e~~~~~~~ 1180 (1237)
...+..+ .. .....+...-++ .--.+...+..+|..+....+ |..+...+..+..+..+++
T Consensus 170 ~~~~~~~--------~~-~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr----- 235 (584)
T PRK13406 170 ALRDARE--------IP-IDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGR----- 235 (584)
T ss_pred ChHHhcc--------cC-CCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCC-----
Confidence 7654321 00 000111111111 012334444444443333222 3333333444444444443
Q ss_pred CCCCCCccccHHHHHHHHHHhc
Q 000888 1181 SGCADIRPLNMDDFKYAHERVC 1202 (1237)
Q Consensus 1181 ~~~~~~r~Lt~eDF~~AL~~v~ 1202 (1237)
..|+.+|+.+|+.-+.
T Consensus 236 ------~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 236 ------TAVEEEDLALAARLVL 251 (584)
T ss_pred ------CCCCHHHHHHHHHHHH
Confidence 4688899999888764
No 257
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.29 E-value=1.3e-05 Score=98.26 Aligned_cols=195 Identities=20% Similarity=0.294 Sum_probs=110.6
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc----
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 1007 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~---- 1007 (1237)
.+.+|+.-..+-.+.++..+...+. . ..+.+-+||+||+|||||++++.+|+++++.++....+...
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~-------~--~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS-------G--SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc-------c--CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 4677777776655666665542111 1 22334689999999999999999999999998886433220
Q ss_pred ---ccccccc---HHHHHH--HH-----HHHHh-----------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 1008 ---SKWFGEG---EKYVKA--VF-----SLASK-----------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 1008 ---s~~~G~s---e~~I~~--lF-----~~A~k-----------~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
..+.+.. ..+..+ .| ..++. ..+.||+|+|+-.++... ....+.++..++.
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~~~f~~~L~~~l~ 161 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----TSRFREALRQYLR 161 (519)
T ss_pred cccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----HHHHHHHHHHHHH
Confidence 0111110 101111 12 11111 246799999997664222 1333344444432
Q ss_pred HhcCCcccCCc-cEEEEEe-c------CCC--------CCCcHHHHhhc-cccccCCCCCHHHHHHHHHHHHhhC-----
Q 000888 1064 NWDGLRTKDTE-RILVLAA-T------NRP--------FDLDEAVIRRL-PRRLMVNLPDAPNRAKILQVILAKE----- 1121 (1237)
Q Consensus 1064 ~ldgl~~~~~~-~VlVIaT-T------N~p--------~~Ld~aLlrRF-d~~I~v~~Pd~eeR~eILk~~L~~~----- 1121 (1237)
. ... ++++|.| + +.. ..+++.++... -.+|.|++-...-..+.|+.++..+
T Consensus 162 ---~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~ 234 (519)
T PF03215_consen 162 ---S----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSS 234 (519)
T ss_pred ---c----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhc
Confidence 2 122 6777776 1 111 14566776622 2568898888888888888887655
Q ss_pred C---CCChh-hHHHHHHHcCCCcHHHHHHH
Q 000888 1122 D---LSPDV-DFDAIANMTDGYSGSDLKNL 1147 (1237)
Q Consensus 1122 ~---l~~d~-dl~~LA~~T~GySgaDL~~L 1147 (1237)
+ ..... .++.|+..+.|-....|.+|
T Consensus 235 ~~~~~p~~~~~l~~I~~~s~GDIRsAIn~L 264 (519)
T PF03215_consen 235 GKNKVPDKQSVLDSIAESSNGDIRSAINNL 264 (519)
T ss_pred CCccCCChHHHHHHHHHhcCchHHHHHHHH
Confidence 1 11222 37788888777444444433
No 258
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.29 E-value=2.6e-06 Score=96.39 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=104.6
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 1004 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~------fi~Id~s 1004 (1237)
...+.|+++.+++...+.++... . .- .++|+|||||+|||....+.|..+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~----------~--~l--Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM----------P--GL--PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC----------C--CC--CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 35677888888888887776432 1 12 389999999999999999999988543 1112222
Q ss_pred ccccccccccHHHHHHHHHHHHh-------cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEE
Q 000888 1005 SITSKWFGEGEKYVKAVFSLASK-------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 1077 (1237)
Q Consensus 1005 eL~s~~~G~se~~I~~lF~~A~k-------~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~Vl 1077 (1237)
+=.+ ++ ....--+.|..++. ..+..+++||.|.+. ...+.++++++..+ ..++.
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~-----------t~n~r 163 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKY-----------TANTR 163 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHh-----------ccceE
Confidence 1111 11 11222234555542 267899999999883 23455566554443 23455
Q ss_pred EEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCC
Q 000888 1078 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 1123 (1237)
Q Consensus 1078 VIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l 1123 (1237)
+...+|.+..+.+++++|| ..+.|...+..+....+.+++..+..
T Consensus 164 F~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred EEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchh
Confidence 5566899999999999999 56788877877777777777765443
No 259
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.25 E-value=7.1e-06 Score=92.29 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=58.3
Q ss_pred CCeEEEEcchhhhhcCC-----cchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCC
Q 000888 691 CPFILFMKDAEKSIAGN-----SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPD 765 (1237)
Q Consensus 691 ~p~ILfi~di~~~~~~~-----~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~ 765 (1237)
.+-||||||+|.+..+. .+..+.|-..++...+++++|++.+..+. ++
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~-~~-------------------------- 157 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM-DY-------------------------- 157 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh-HH--------------------------
Confidence 35699999999976422 22334455556666788888877654331 00
Q ss_pred ccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000888 766 SFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1237)
Q Consensus 766 ~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~ 812 (1237)
| ..++.+|..||+..|.++.++.+++.+||+..+..
T Consensus 158 -~----------~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 158 -F----------LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred -H----------HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 0 11467888999999999999999999999976643
No 260
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.24 E-value=2e-05 Score=87.98 Aligned_cols=91 Identities=21% Similarity=0.306 Sum_probs=61.0
Q ss_pred CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC-------------CCCCcHHHHhh
Q 000888 1029 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-------------PFDLDEAVIRR 1095 (1237)
Q Consensus 1029 ~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-------------p~~Ld~aLlrR 1095 (1237)
-|.||||||++.|- -..+..|-..+..- -.+ +||.++|+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhMLD------------iEcFTyL~kalES~----iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD------------IECFTYLHKALESP----IAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhhh------------hHHHHHHHHHhcCC----CCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 57899999998771 12222232333321 233 44555555 67889999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcC
Q 000888 1096 LPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 1137 (1237)
Q Consensus 1096 Fd~~I~v~~Pd~eeR~eILk~~L~~~~l~-~d~dl~~LA~~T~ 1137 (1237)
+ .+|..-+++.++.++|++...+.+++. ++..+..|+....
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 8 677778889999999999998888776 4444666666543
No 261
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=7.7e-06 Score=95.08 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=89.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---cccc-ccccHHHH
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 1018 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------------------~fi~Id~seL---~s~~-~G~se~~I 1018 (1237)
+-+..+||+||+|+|||++|+++|+.+.+ .|+.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34468999999999999999999998732 2333433110 0000 00123456
Q ss_pred HHHHHHHHhc----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHh
Q 000888 1019 KAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR 1094 (1237)
Q Consensus 1019 ~~lF~~A~k~----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr 1094 (1237)
+.+.+.+... ...|++||+++.|- ....+.++..++... ..+.+|.+|+.++.+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN------------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC------------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 7766666543 34699999999882 233455555565542 235566688888999999999
Q ss_pred hccccccCCCCCHHHHHHHHHH
Q 000888 1095 RLPRRLMVNLPDAPNRAKILQV 1116 (1237)
Q Consensus 1095 RFd~~I~v~~Pd~eeR~eILk~ 1116 (1237)
|+ ..+.|+.|+.++..+.|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 7889999999988877754
No 262
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.9e-07 Score=105.85 Aligned_cols=48 Identities=38% Similarity=0.538 Sum_probs=40.5
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
...|.|+.|++..|..|...... + +++||+||||||||+||+.+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG-----------g-----HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG-----------G-----HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc-----------C-----CcEEEecCCCCchHHhhhhhcccC
Confidence 45799999999999999876542 2 589999999999999999987655
No 263
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.22 E-value=5.4e-06 Score=100.90 Aligned_cols=190 Identities=19% Similarity=0.214 Sum_probs=109.2
Q ss_pred HHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000888 913 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 992 (1237)
Q Consensus 913 ~~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~ 992 (1237)
..|+.+.+...+.| +|.+++++|+.|.-.+..-.. ..+.+++..+.--+|||+|.||||||.|.+.+++
T Consensus 416 rpdiy~lLa~SiAP---------sIye~edvKkglLLqLfGGt~--k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~ 484 (804)
T KOG0478|consen 416 RPDIYELLARSIAP---------SIYELEDVKKGLLLQLFGGTR--KEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHR 484 (804)
T ss_pred CccHHHHHHHhhch---------hhhcccchhhhHHHHHhcCCc--ccccccccccccceEEEecCCCcCHHHHHHHHHH
Confidence 45566666666665 688999999988766654222 2223333233446899999999999999999998
Q ss_pred HhCCcEEEEe-cccccc--ccccccHHHHHHHHHHH---HhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHH--HHHH
Q 000888 993 EAGANFINIS-MSSITS--KWFGEGEKYVKAVFSLA---SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVN 1064 (1237)
Q Consensus 993 eLg~~fi~Id-~seL~s--~~~G~se~~I~~lF~~A---~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~e--LL~~ 1064 (1237)
.+..-.+.-- .+.-++ .|+.... ..+++.-+. --...+|.+|||+|.|- ......+.+++++ +-..
T Consensus 485 l~pRg~yTSGkGsSavGLTayVtrd~-dtkqlVLesGALVLSD~GiCCIDEFDKM~-----dStrSvLhEvMEQQTvSIA 558 (804)
T KOG0478|consen 485 LLPRGVYTSGKGSSAVGLTAYVTKDP-DTRQLVLESGALVLSDNGICCIDEFDKMS-----DSTRSVLHEVMEQQTLSIA 558 (804)
T ss_pred hCCcceeecCCccchhcceeeEEecC-ccceeeeecCcEEEcCCceEEchhhhhhh-----HHHHHHHHHHHHHhhhhHh
Confidence 8743322210 000000 0000000 001111000 01234799999999992 2222333333322 2223
Q ss_pred hcCCcccCCccEEEEEecCCCC-------------CCcHHHHhhcccccc-CCCCCHHHHHHHHHHHHh
Q 000888 1065 WDGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLM-VNLPDAPNRAKILQVILA 1119 (1237)
Q Consensus 1065 ldgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~-v~~Pd~eeR~eILk~~L~ 1119 (1237)
.-|+-..-+.+.-|||++|... .|+|.+++|||.++. ++.||...-+.+..++..
T Consensus 559 KAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 559 KAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred hcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 3455445567889999999531 678999999987644 477887755566555543
No 264
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.20 E-value=3.9e-06 Score=90.47 Aligned_cols=161 Identities=18% Similarity=0.279 Sum_probs=85.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEec-ccc---------------------ccc-------------ccc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SSI---------------------TSK-------------WFG 1012 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~---~fi~Id~-seL---------------------~s~-------------~~G 1012 (1237)
..++|+||.|+|||+|++.+.+.+.- ..+.+.. ... ... ...
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSE 100 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-G
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchh
Confidence 57999999999999999999998832 1112211 100 000 001
Q ss_pred ccHHHHHHHHHHHHhcC-CcEEEEccchhhh-cCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC----
Q 000888 1013 EGEKYVKAVFSLASKIA-PSVIFVDEVDSML-GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---- 1086 (1237)
Q Consensus 1013 ~se~~I~~lF~~A~k~~-PsILfIDEID~L~-~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~---- 1086 (1237)
.....+..++....+.. ..||+|||++.+. ..... ..++..|...++.... ..++.+|.++....
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~-------~~~~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~ 171 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED-------KDFLKSLRSLLDSLLS--QQNVSIVITGSSDSLMEE 171 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT-------HHHHHHHHHHHHH------TTEEEEEEESSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch-------HHHHHHHHHHHhhccc--cCCceEEEECCchHHHHH
Confidence 12344556666655543 4899999999997 22211 2333444444444222 23344443333211
Q ss_pred --CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCC-C-CChhhHHHHHHHcCCCcH
Q 000888 1087 --DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED-L-SPDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1087 --~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~-l-~~d~dl~~LA~~T~GySg 1141 (1237)
.-...+..|+.. +.++..+.++..++++..+.... + .++.+++.+...+.|+.+
T Consensus 172 ~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 172 FLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp TT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred hhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 111234457755 89999999999999999876651 1 267788999999998654
No 265
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.18 E-value=1.6e-05 Score=99.47 Aligned_cols=49 Identities=31% Similarity=0.493 Sum_probs=41.7
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 995 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg 995 (1237)
...|+++.|+++.++.|...+.. . .++||+||||+|||++|+++++.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~--------------~--~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ--------------R--RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh--------------C--CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 46799999999999998877652 1 3799999999999999999998774
No 266
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.17 E-value=3.8e-05 Score=86.07 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCC-hhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1085 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1085 p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~-d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e 1163 (1237)
|+-++-.++.|. .+|.-.+++.++.++||+..+..+.+.- +..++.|......-+-+--.+|+..|...+.++
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr----- 412 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR----- 412 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-----
Confidence 678888999998 6777788999999999999998877663 333455555544444444456666666665554
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000888 1164 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1202 (1237)
Q Consensus 1164 ~~~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~ 1202 (1237)
....+..+|++.+.+-+.
T Consensus 413 ---------------------k~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 413 ---------------------KGKVVEVDDIERVYRLFL 430 (454)
T ss_pred ---------------------cCceeehhHHHHHHHHHh
Confidence 335688899999988764
No 267
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.16 E-value=1.2e-05 Score=97.41 Aligned_cols=168 Identities=21% Similarity=0.297 Sum_probs=98.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccccHHH-------HHHHHHHHHhcCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 1035 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~-----~~G~se~~-------I~~lF~~A~k~~PsILfI 1035 (1237)
..+||.|++||||+++|+++.... +.+|+.++|..+... .+|..... ....|+ ....+.|||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l 238 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFE---QADGGTLFL 238 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEE
Confidence 469999999999999999998876 579999999876321 11111000 000122 223478999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------ccCCccEEEEEecCCC-------CCCcHHHHhhcccccc
Q 000888 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1101 (1237)
Q Consensus 1036 DEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1101 (1237)
||||.|- ......|+..++... .....++.||+||+.. ..+.+.+..||. .+.
T Consensus 239 ~~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~ 305 (469)
T PRK10923 239 DEIGDMP------------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIR 305 (469)
T ss_pred eccccCC------------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-cee
Confidence 9999882 122223333333211 0112356888888753 246677777873 355
Q ss_pred CCCCCHHHHHH----HHHHHHhh----CCC----CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000888 1102 VNLPDAPNRAK----ILQVILAK----EDL----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1102 v~~Pd~eeR~e----ILk~~L~~----~~l----~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
+..|...+|.+ +++.++.. .+. .....+..|.+..-.-+.++|+++++.|+..
T Consensus 306 i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 55665555543 55555432 111 1233455555555455778888888877754
No 268
>PRK08181 transposase; Validated
Probab=98.14 E-value=5.7e-06 Score=93.72 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=48.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccccc-HHHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~s-e~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
.+++|+||||||||+||.++++++ |..++.+++.+++....... ......++... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999876 77888888877765432110 11122333332 24679999999866
No 269
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.07 E-value=8.4e-06 Score=94.87 Aligned_cols=69 Identities=25% Similarity=0.472 Sum_probs=47.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc---cHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~---se~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
.+++|+||+|+|||+||.|||+++ +..++.++..+++...... ........+... ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 689999999999999999999998 7888889888775533111 000111112222 24579999999755
No 270
>CHL00181 cbbX CbbX; Provisional
Probab=98.06 E-value=1.2e-05 Score=91.87 Aligned_cols=133 Identities=19% Similarity=0.164 Sum_probs=85.8
Q ss_pred eeccCCCCCCCC-----CCCC------CCCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchh
Q 000888 633 VRFDKPIPDGVD-----LGGQ------CEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAE 701 (1237)
Q Consensus 633 V~Fd~~~~~~~~-----l~~~------c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~ 701 (1237)
|.|.+|||+||| ++.. +..++ |+-...++-..+|+|+. ++ .+ .+++.+ ..+-||||||++
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~-~~~v~~~~l~~~~~g~~-~~-~~---~~~l~~---a~ggVLfIDE~~ 132 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGH-LLTVTRDDLVGQYIGHT-AP-KT---KEVLKK---AMGGVLFIDEAY 132 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCc-eEEecHHHHHHHHhccc-hH-HH---HHHHHH---ccCCEEEEEccc
Confidence 789999999999 2221 22233 33222344556677762 11 12 333433 334699999999
Q ss_pred hhhcC------CcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCC
Q 000888 702 KSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGK 775 (1237)
Q Consensus 702 ~~~~~------~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~ 775 (1237)
.+... ..+..+.|...|+...++++||++++..+ ++. |
T Consensus 133 ~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~-----------------------~~~-----~-------- 176 (287)
T CHL00181 133 YLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR-----------------------MDK-----F-------- 176 (287)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH-----H--------
Confidence 86531 23444455555666668899999976432 010 0
Q ss_pred CchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000888 776 EIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1237)
Q Consensus 776 ~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~ 812 (1237)
...+..|.+||+..|+|+.++.+++.+||+..+.+
T Consensus 177 --~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 177 --YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred --HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 11357899999999999999999999999988766
No 271
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.05 E-value=5.4e-05 Score=91.40 Aligned_cols=168 Identities=20% Similarity=0.285 Sum_probs=97.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----cccccHHH-------HHHHHHHHHhcCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 1035 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~-----~~G~se~~-------I~~lF~~A~k~~PsILfI 1035 (1237)
..+|++|++||||+++|+++.... +.+|+.++|..+... .+|..... ....|.. ...++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEE
Confidence 479999999999999999998765 579999999876322 11111000 0011222 23479999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------ccCCccEEEEEecCCC-------CCCcHHHHhhcccccc
Q 000888 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1101 (1237)
Q Consensus 1036 DEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1101 (1237)
||||.|- ..+...|+..++... .....++.||+||+.. ..+.+.+..|+ ..+.
T Consensus 244 d~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~ 310 (457)
T PRK11361 244 DEIGEMP------------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIH 310 (457)
T ss_pred echhhCC------------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccce
Confidence 9999882 112233333333211 1112357888888864 24555666666 3466
Q ss_pred CCCCCHHHHHH----HHHHHHhhC----CC----CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000888 1102 VNLPDAPNRAK----ILQVILAKE----DL----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1102 v~~Pd~eeR~e----ILk~~L~~~----~l----~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
+..|...+|.+ +++.++.+. +. .....+..|....-.-+.++|++++..|+..
T Consensus 311 i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 311 LILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred ecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 77777777654 333343321 11 1223344455544444678888888877754
No 272
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.04 E-value=2.2e-05 Score=77.88 Aligned_cols=97 Identities=15% Similarity=0.310 Sum_probs=60.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecccccc--------------ccc--cccHHHHHHHHHHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS--------------KWF--GEGEKYVKAVFSLAS 1026 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL--------g~~fi~Id~seL~s--------------~~~--G~se~~I~~lF~~A~ 1026 (1237)
+.++++||+|+|||++++.++..+ ..+++.++++.... ... .........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 579999999999999999999988 67888887754320 000 112333444555555
Q ss_pred hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEec
Q 000888 1027 KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 1082 (1237)
Q Consensus 1027 k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTT 1082 (1237)
+....+|+|||+|.|. . ..+++.+...++ ..+-+++++++.
T Consensus 85 ~~~~~~lviDe~~~l~--~---------~~~l~~l~~l~~----~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF--S---------DEFLEFLRSLLN----ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH--T---------HHHHHHHHHHTC----SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC--C---------HHHHHHHHHHHh----CCCCeEEEEECh
Confidence 5555699999999874 1 344555544444 224456666655
No 273
>PF13173 AAA_14: AAA domain
Probab=98.02 E-value=1.4e-05 Score=80.22 Aligned_cols=69 Identities=29% Similarity=0.433 Sum_probs=47.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg--~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
+-++|+||.|+|||++++.+++.+. -.++.+++.+.......... +...+.........+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3689999999999999999999886 77888887765332111111 222222222225689999999877
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.02 E-value=3.1e-05 Score=89.39 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=48.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccccc-HHHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~s-e~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
.++++|+||+|+|||+||.|+|+++ |..+..+.+++++....... ...+...+.... ...||+||||..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 3689999999999999999999998 78888888877654322110 011222333322 4579999999743
No 275
>PRK15115 response regulator GlrR; Provisional
Probab=98.01 E-value=4.8e-05 Score=91.61 Aligned_cols=165 Identities=17% Similarity=0.282 Sum_probs=95.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHHHHHHHHHH---------------HHhcCCcE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSL---------------ASKIAPSV 1032 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~se~~I~~lF~~---------------A~k~~PsI 1032 (1237)
..++|+|++||||+++|+++.+.. +.+|+.++|..+..... -..+|-. ......++
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 369999999999999999998876 57999999987632211 1112211 11223479
Q ss_pred EEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------ccCCccEEEEEecCCC-------CCCcHHHHhhccc
Q 000888 1033 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPR 1098 (1237)
Q Consensus 1033 LfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~ 1098 (1237)
|||||||.|- . .....|+..++... .....++.+|+||+.. ..+.+.+..|+ .
T Consensus 232 l~l~~i~~l~-----~-------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~ 298 (444)
T PRK15115 232 LFLDEIGDMP-----A-------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-N 298 (444)
T ss_pred EEEEccccCC-----H-------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-c
Confidence 9999999882 1 12222333332211 1112367888888753 12333444444 2
Q ss_pred cccCCCCCHHHHHH----HHHHHHhhC----C--C--CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 000888 1099 RLMVNLPDAPNRAK----ILQVILAKE----D--L--SPDVDFDAIANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1099 ~I~v~~Pd~eeR~e----ILk~~L~~~----~--l--~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
.+.+..|...+|.+ +++.++... + . .++..+..|....-.-+.++|+++++.|+..
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 45667777777754 344444321 1 1 1333455555555344677788877777653
No 276
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.99 E-value=7.4e-06 Score=95.33 Aligned_cols=74 Identities=28% Similarity=0.558 Sum_probs=63.4
Q ss_pred CCeeEEcCCCCcceeecCCC--CccceEEEEEEecCCceEEEEEEeCCCceEEcCeeecCCCe-eEccCCCEEEEeecCC
Q 000888 144 ASIFTVGSSRQCNFPLKDQA--ISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTS-CELRSGDEVVFGSLGN 220 (1237)
Q Consensus 144 ~~~~tvGr~~~Cd~~l~~~~--~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~~~-~~L~~gDeI~f~~~~~ 220 (1237)
....+|||+..||-.|.|+. ||+-||+|..- +|. .||.|+|+|||+|||-.+-.|.. +-|..||+|.++ +
T Consensus 25 ~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd~i~iG---~ 97 (430)
T COG3456 25 RGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGLLVNGSDLPLGEGSARLQQGDEILIG---R 97 (430)
T ss_pred cCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCceeecccccCCCCCccccccCCEEeec---c
Confidence 35689999999999999876 89999999853 333 69999998889999999999877 999999999873 3
Q ss_pred eeEEEE
Q 000888 221 HAYIFQ 226 (1237)
Q Consensus 221 ~ayiF~ 226 (1237)
|||.
T Consensus 98 --y~i~ 101 (430)
T COG3456 98 --YIIR 101 (430)
T ss_pred --EEEE
Confidence 6776
No 277
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.98 E-value=3.2e-05 Score=93.52 Aligned_cols=170 Identities=20% Similarity=0.289 Sum_probs=90.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccccHH----HHHHHHHHHHhcCCcEEEEccc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEK----YVKAVFSLASKIAPSVIFVDEV 1038 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~-----~G~se~----~I~~lF~~A~k~~PsILfIDEI 1038 (1237)
..+++.|.+||||+++|+++.... +.+|+.++|..+...+ +|.... ..............+.||||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei 237 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEI 237 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEch
Confidence 469999999999999999998775 5799999998763321 121100 0000000011223589999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------ccCCccEEEEEecCCC-------CCCcHHHHhhccccccCCC
Q 000888 1039 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1039 D~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~ 1104 (1237)
+.|- . .+...|+..++... .....++.||++|+.. ..+.+.+..|+. .+.+..
T Consensus 238 ~~l~-----~-------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~l 304 (463)
T TIGR01818 238 GDMP-----L-------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLN-VIRIHL 304 (463)
T ss_pred hhCC-----H-------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhC-cceecC
Confidence 9882 1 12223333333211 0112356788888753 245566777773 344555
Q ss_pred CCHH----HHHHHHHHHHhhC----CC----CChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 000888 1105 PDAP----NRAKILQVILAKE----DL----SPDVDFDAIANMTDGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1105 Pd~e----eR~eILk~~L~~~----~l----~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~ 1153 (1237)
|... +...+++.++... +. .+...+..|....---+.++|+++++.|+.
T Consensus 305 PpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~ 365 (463)
T TIGR01818 305 PPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTV 365 (463)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 5544 4444555554322 11 122223334333322345666666666654
No 278
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.98 E-value=2.7e-05 Score=93.16 Aligned_cols=85 Identities=27% Similarity=0.450 Sum_probs=65.9
Q ss_pred ccCCccccccccccccccc-hhHHHHHHHHhhhcccCCcccccc-cccccCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 000888 417 ILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 494 (1237)
Q Consensus 417 i~~~~~~~vsf~~fpYyls-e~tk~~L~~~~~~hL~~~~~~~~~-~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a 494 (1237)
+..|++|.-.+++ |.+. |+.|.+|..|+|-|.+.-...... .+.....+.|||.||+| ..+++|||+||+.+++
T Consensus 59 ~~~p~~i~~~L~~--~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 59 LPTPKEIKAHLDQ--YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLAQTLARILDV 134 (412)
T ss_pred CCCHHHHHHHHhh--HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHHHHHHHHhCC
Confidence 6788888888887 3454 889999999999887775332111 13444567899999999 8999999999999999
Q ss_pred eEEEEeccccC
Q 000888 495 KLLIFDSHSLL 505 (1237)
Q Consensus 495 ~ll~~d~~~~~ 505 (1237)
++..+|.+.+.
T Consensus 135 pf~~id~~~l~ 145 (412)
T PRK05342 135 PFAIADATTLT 145 (412)
T ss_pred Cceecchhhcc
Confidence 99998876543
No 279
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.98 E-value=1.1e-05 Score=82.08 Aligned_cols=57 Identities=30% Similarity=0.602 Sum_probs=42.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg---~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..+++.+ ....|||+|||.|
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L 81 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL 81 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC
Confidence 4599999999999999999998774 466666665532 3344443 5689999999988
No 280
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.3e-05 Score=90.60 Aligned_cols=87 Identities=25% Similarity=0.436 Sum_probs=66.5
Q ss_pred hcccCCccccccccccccccc-hhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhC
Q 000888 415 AGILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 493 (1237)
Q Consensus 415 ~~i~~~~~~~vsf~~fpYyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~ 493 (1237)
..+-.|++|.--.|+ |-+. |..|.+|-=|+|-|-|.-.+...-.+..=.---|||-||.| ..++.||+.||+.++
T Consensus 47 ~~lPtP~eik~~Ld~--YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTG--sGKTlLAqTLAk~Ln 122 (408)
T COG1219 47 SELPTPKEIKAHLDE--YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTG--SGKTLLAQTLAKILN 122 (408)
T ss_pred ccCCChHHHHHHhhh--heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCC--CcHHHHHHHHHHHhC
Confidence 346667777777777 5555 99999999999999776433222222333344699999999 799999999999999
Q ss_pred CeEEEEeccccC
Q 000888 494 AKLLIFDSHSLL 505 (1237)
Q Consensus 494 a~ll~~d~~~~~ 505 (1237)
+++-|-|.+.|.
T Consensus 123 VPFaiADATtLT 134 (408)
T COG1219 123 VPFAIADATTLT 134 (408)
T ss_pred CCeeeccccchh
Confidence 999999987664
No 281
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.95 E-value=1.8e-05 Score=95.80 Aligned_cols=217 Identities=18% Similarity=0.226 Sum_probs=128.8
Q ss_pred CHHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 000888 912 TENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 991 (1237)
Q Consensus 912 ~~~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA 991 (1237)
....+.+.+...+.| .|.|.+.+|.-+.-.+..-...... .+...+.-.+|+|.|.||+||+.+.++++
T Consensus 331 ~~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~a~--eg~~lRGDinv~iVGDPgt~KSQfLk~v~ 399 (764)
T KOG0480|consen 331 KDENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKSAG--EGTSLRGDINVCIVGDPGTGKSQFLKAVC 399 (764)
T ss_pred cCchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCccccCC--CCccccCCceEEEeCCCCccHHHHHHHHh
Confidence 344566667777666 6789999999887766654332211 11112233579999999999999999999
Q ss_pred HHhCCcEEEEe----ccccccccccccH--HHH--HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 992 TEAGANFINIS----MSSITSKWFGEGE--KYV--KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 992 ~eLg~~fi~Id----~seL~s~~~G~se--~~I--~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
.-+...++.-- .+.|....+...+ .+. ...+-.| ..+|..|||+|.| ...++.++...+++--.
T Consensus 400 ~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLA---DnGICCIDEFDKM-----d~~dqvAihEAMEQQtI 471 (764)
T KOG0480|consen 400 AFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLA---DNGICCIDEFDKM-----DVKDQVAIHEAMEQQTI 471 (764)
T ss_pred ccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEc---cCceEEechhccc-----ChHhHHHHHHHHHhhee
Confidence 87754443321 1111111110000 000 0011122 2479999999988 22234444443333221
Q ss_pred H--hcCCcccCCccEEEEEecCCCC-------------CCcHHHHhhcccc-ccCCCCCHHHHHHHHHHHHhhCCCCChh
Q 000888 1064 N--WDGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRR-LMVNLPDAPNRAKILQVILAKEDLSPDV 1127 (1237)
Q Consensus 1064 ~--ldgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~-I~v~~Pd~eeR~eILk~~L~~~~l~~d~ 1127 (1237)
. --|+...-+.+.-|||++|+.. .+.+++++|||.. |.++.|+...-..|-++++..+...++.
T Consensus 472 SIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~ 551 (764)
T KOG0480|consen 472 SIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA 551 (764)
T ss_pred hheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc
Confidence 2 2234334467788999999742 5778999999975 4458899988888888888664332211
Q ss_pred hHHHHHHHcCCCcHHHHHHHHHHHH
Q 000888 1128 DFDAIANMTDGYSGSDLKNLCVTAA 1152 (1237)
Q Consensus 1128 dl~~LA~~T~GySgaDL~~L~~~Aa 1152 (1237)
..+...|+..+++..+..|.
T Consensus 552 -----~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 552 -----TERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred -----ccccccccHHHHHHHHHHHH
Confidence 11124677777777766664
No 282
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.95 E-value=0.00014 Score=93.94 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.7
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 000888 466 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 501 (1237)
Q Consensus 466 ~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d~ 501 (1237)
.+.+||.||+| +.+.+|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeC
Confidence 34699999999 99999999999999999888874
No 283
>PRK06526 transposase; Provisional
Probab=97.92 E-value=1.1e-05 Score=90.62 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=46.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-cHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
.+++|+||||||||+||.+|+.++ |..++.+++.+++...... ....+...+.. -..+.+|+|||++.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 589999999999999999999886 6777667666654432111 01111222222 234689999999866
No 284
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.92 E-value=1e-05 Score=86.35 Aligned_cols=69 Identities=28% Similarity=0.477 Sum_probs=46.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccccc-HHHHHHHHHHHHhcCCcEEEEccchh
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDS 1040 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~s-e~~I~~lF~~A~k~~PsILfIDEID~ 1040 (1237)
..+++|+||+|+|||+||.++++++ |..+..++..+++....... .......+.... ...+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 3689999999999999999999887 88899999888755432211 111222333333 357999999963
No 285
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00014 Score=83.05 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=79.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--------EEecccccccc-cc----ccHHHHHHHHHHHHhc----CC
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FG----EGEKYVKAVFSLASKI----AP 1030 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi--------~Id~seL~s~~-~G----~se~~I~~lF~~A~k~----~P 1030 (1237)
+-+..+||+||.|+||+.+|.++|..+-+.-. .-..+++.--. .+ -.-..++.+...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 34468999999999999999999998843200 00112221000 01 1233455555555433 34
Q ss_pred cEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCC
Q 000888 1031 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1105 (1237)
Q Consensus 1031 sILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~P 1105 (1237)
.|++||++|.|- ....|.||..++. ++.++++|..|+.++.|.|.+++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 699999999882 3445666666665 3567888888999999999999998 56666654
No 286
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.86 E-value=5.2e-05 Score=90.99 Aligned_cols=126 Identities=19% Similarity=0.389 Sum_probs=73.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccccHHHH-------HHHHHHHHhcCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKYV-------KAVFSLASKIAPSVIFV 1035 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~-----~G~se~~I-------~~lF~~A~k~~PsILfI 1035 (1237)
..++++|.+|+||+++|+++.... +.+|+.++|..+.... +|...... ...+ .....++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~---~~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF---VEADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCce---eECCCCEEEE
Confidence 579999999999999999997765 5799999998763221 11100000 0011 1224589999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc-------ccCCccEEEEEecCCC-------CCCcHHHHhhcccccc
Q 000888 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP-------FDLDEAVIRRLPRRLM 1101 (1237)
Q Consensus 1036 DEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~ 1101 (1237)
|||+.|- . .....|+..++... .....++.+|++|+.. ..+.+.+..|+ ..+.
T Consensus 240 dei~~l~-----~-------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~ 306 (441)
T PRK10365 240 DEIGDIS-----P-------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVA 306 (441)
T ss_pred eccccCC-----H-------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccce
Confidence 9999883 1 12223333333211 0112346678777653 23444555555 3466
Q ss_pred CCCCCHHHHHH
Q 000888 1102 VNLPDAPNRAK 1112 (1237)
Q Consensus 1102 v~~Pd~eeR~e 1112 (1237)
+..|...+|.+
T Consensus 307 i~~ppLreR~~ 317 (441)
T PRK10365 307 IEVPSLRQRRE 317 (441)
T ss_pred ecCCChhhcch
Confidence 67777666654
No 287
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.85 E-value=2.9e-05 Score=87.35 Aligned_cols=70 Identities=24% Similarity=0.416 Sum_probs=49.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccHH--HHHHHHHHHHhcCCcEEEEccchhh
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK--YVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~se~--~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
..+++|+||||+|||+||.||++++ |..++.+..++++...-..-.. .-..+.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 3689999999999999999999988 7889999988886653221111 111122212 23579999999755
No 288
>PRK06921 hypothetical protein; Provisional
Probab=97.85 E-value=3.2e-05 Score=87.56 Aligned_cols=67 Identities=25% Similarity=0.358 Sum_probs=44.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDS 1040 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL----g~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~ 1040 (1237)
.+++|+|++|+|||+|+.|||+++ +..++.++..+++....... ......+.. -....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 589999999999999999999987 56777887666543221110 111112122 22467999999953
No 289
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.83 E-value=9.4e-05 Score=75.08 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=48.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----------------------ccc--cHHHHHHHHHHH
Q 000888 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----------------------FGE--GEKYVKAVFSLA 1025 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~----------------------~G~--se~~I~~lF~~A 1025 (1237)
++|+||||+|||+++.+++..+ +.+++.++........ ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999887 5677777664332100 000 111222345556
Q ss_pred HhcCCcEEEEccchhhhc
Q 000888 1026 SKIAPSVIFVDEVDSMLG 1043 (1237)
Q Consensus 1026 ~k~~PsILfIDEID~L~~ 1043 (1237)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998864
No 290
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.83 E-value=1.7e-06 Score=100.79 Aligned_cols=189 Identities=25% Similarity=0.352 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 000888 913 ENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 992 (1237)
Q Consensus 913 ~~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~ 992 (1237)
..++...+.+.+.| .|.|.+.+|..+.-.+........ ..+...+..-++||.|.||+|||.|.+.+++
T Consensus 11 ~~~~~~~l~~s~aP---------~i~g~~~iK~aill~L~~~~~~~~--~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~ 79 (331)
T PF00493_consen 11 KPNIFDRLANSIAP---------SIYGHEDIKKAILLQLFGGVEKND--PDGTRIRGNIHILLVGDPGTGKSQLLKYVAK 79 (331)
T ss_dssp TTTHHHCCHHHCSS---------TTTT-HHHHHHHCCCCTT--SCCC--CT-TEE--S--EEEECSCHHCHHHHHHCCCC
T ss_pred CCcHHHHHHHHhCC---------cCcCcHHHHHHHHHHHHhcccccc--ccccccccccceeeccchhhhHHHHHHHHHh
Confidence 33455556666665 578888888776543332211100 0011123345899999999999999998876
Q ss_pred HhCCcEEEEecc-----ccccccc---cccHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHH
Q 000888 993 EAGANFINISMS-----SITSKWF---GEGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1063 (1237)
Q Consensus 993 eLg~~fi~Id~s-----eL~s~~~---G~se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~ 1063 (1237)
.....++. +.. .|..... ...+..+ ...+-.|.+ +|++|||+|.+ .......+..++++=..
T Consensus 80 ~~pr~v~~-~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~i 150 (331)
T PF00493_consen 80 LAPRSVYT-SGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTI 150 (331)
T ss_dssp T-SSEEEE-ECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCE
T ss_pred hCCceEEE-CCCCcccCCccceeccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCee
Confidence 65443322 211 1211110 0111111 123344444 89999999988 22222222222221100
Q ss_pred Hh--cCCcccCCccEEEEEecCCCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhhC
Q 000888 1064 NW--DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE 1121 (1237)
Q Consensus 1064 ~l--dgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~v-~~Pd~eeR~eILk~~L~~~ 1121 (1237)
.+ .|+...-+.+.-|+|++|... .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 151 si~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 151 SIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred ccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 11 122222346788999999754 4677899999988665 7788777777888777543
No 291
>PF05729 NACHT: NACHT domain
Probab=97.83 E-value=0.00012 Score=75.02 Aligned_cols=139 Identities=15% Similarity=0.262 Sum_probs=73.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEecccccccc------------ccccHHHHHH-HHHHHHhcC
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAG--------AN-FINISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 1029 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg--------~~-fi~Id~seL~s~~------------~G~se~~I~~-lF~~A~k~~ 1029 (1237)
-++|+|+||+|||++++.++..+. .. ++.+.+.++.... .......+.. ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998771 12 2233333321110 0001111111 122334556
Q ss_pred CcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhcc--ccccCCCCCH
Q 000888 1030 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP--RRLMVNLPDA 1107 (1237)
Q Consensus 1030 PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd--~~I~v~~Pd~ 1107 (1237)
..+|+||.+|.+...... .........+..++ ... ...+.+++| |+. +..... +.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~---~~~-~~~~~~lii--t~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLL---PQA-LPPGVKLII--TSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHh---hhc-cCCCCeEEE--EEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 678999999999643211 01112223333333 221 111233333 332 222222 444333 3478888999
Q ss_pred HHHHHHHHHHHh
Q 000888 1108 PNRAKILQVILA 1119 (1237)
Q Consensus 1108 eeR~eILk~~L~ 1119 (1237)
+++.++++.++.
T Consensus 153 ~~~~~~~~~~f~ 164 (166)
T PF05729_consen 153 EDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHhh
Confidence 999999998875
No 292
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.82 E-value=8.3e-05 Score=88.88 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=62.5
Q ss_pred ccCCccccccccccccccc-hhHHHHHHHHhhhcccCCcc--cccc-cccccCCCceeeecCCCchHHHHHHHHHHHhHh
Q 000888 417 ILDGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDH--AKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYF 492 (1237)
Q Consensus 417 i~~~~~~~vsf~~fpYyls-e~tk~~L~~~~~~hL~~~~~--~~~~-~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f 492 (1237)
+..|++|.-.++++ .+. |+.|..|.-|+|-|.+.-.. .... .+..-....|||.||+| ..+++|||+||+.+
T Consensus 65 ~~~p~~i~~~L~~~--ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~lAraLA~~l 140 (413)
T TIGR00382 65 LPTPKEIKAHLDEY--VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTLLAQTLARIL 140 (413)
T ss_pred CCCHHHHHHHhcce--ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHHHHHHHHHhc
Confidence 55677777777773 333 89999999999999887433 1111 12233456899999999 89999999999999
Q ss_pred CCeEEEEecccc
Q 000888 493 GAKLLIFDSHSL 504 (1237)
Q Consensus 493 ~a~ll~~d~~~~ 504 (1237)
++++.++|.+.|
T Consensus 141 ~~pf~~~da~~L 152 (413)
T TIGR00382 141 NVPFAIADATTL 152 (413)
T ss_pred CCCeEEechhhc
Confidence 999888776443
No 293
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.81 E-value=0.00013 Score=80.98 Aligned_cols=138 Identities=18% Similarity=0.193 Sum_probs=79.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1050 (1237)
.+-.++||+|||||.+++++|+.+|.+++.++|++.+. ...+.++|.-+... .+-+++||+++|- ...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~-----~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLS-----EEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS-----HHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhhh-----HHH
Confidence 46778999999999999999999999999999987543 45677888777664 4899999999882 111
Q ss_pred hHHHHHHHHHHHHHhcCCcc---------cCCccEEEEEecCC----CCCCcHHHHhhccccccCCCCCHHHHHHHHHHH
Q 000888 1051 HEAMRKMKNEFMVNWDGLRT---------KDTERILVLAATNR----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVI 1117 (1237)
Q Consensus 1051 ~~a~~~il~eLL~~ldgl~~---------~~~~~VlVIaTTN~----p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~ 1117 (1237)
-......++.+...+..-.. .-+...-+..|.|. ...|++.++.-| +.+.+..||.....++ +
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei---~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI---L 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH---H
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH---H
Confidence 11112222222222221100 00123344556663 357888888877 7788888987655544 4
Q ss_pred HhhCCCC
Q 000888 1118 LAKEDLS 1124 (1237)
Q Consensus 1118 L~~~~l~ 1124 (1237)
+-..+..
T Consensus 177 L~s~GF~ 183 (231)
T PF12774_consen 177 LLSQGFK 183 (231)
T ss_dssp HHCCCTS
T ss_pred HHHcCch
Confidence 5444543
No 294
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00063 Score=77.98 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=92.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------------EEEeccccccc-cccc--cHHHHHHHHHHHHhc
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAGANF----------------INISMSSITSK-WFGE--GEKYVKAVFSLASKI 1028 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f----------------i~Id~seL~s~-~~G~--se~~I~~lF~~A~k~ 1028 (1237)
+.+..+||+|| .||+.+|+++|..+-+.- ..-+.+++.-- ..|. .-..++.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44478999996 689999999998773210 00011222100 0011 234556655555432
Q ss_pred ----CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCC
Q 000888 1029 ----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1029 ----~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~ 1104 (1237)
...|++||++|.|. ....|.||..++. ++.++++|.+|+.++.+-|.+++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 34699999999882 3445667777665 3456888888999999999999999 6777865
Q ss_pred CCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHH
Q 000888 1105 PDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLC 1148 (1237)
Q Consensus 1105 Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~ 1148 (1237)
+.++..+++. ..++..+ ....++.. .| ++.....+.
T Consensus 163 -~~~~~~~~L~----~~g~~~~-~a~~la~~-~~-s~~~A~~l~ 198 (290)
T PRK07276 163 -NEAYLIQLLE----QKGLLKT-QAELLAKL-AQ-STSEAEKLA 198 (290)
T ss_pred -cHHHHHHHHH----HcCCChH-HHHHHHHH-CC-CHHHHHHHh
Confidence 4444444443 3444322 22334444 34 444444444
No 295
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.80 E-value=5.6e-05 Score=86.41 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=88.3
Q ss_pred cceeeccCCCCCCCC-CC----C-CCCCCC----ccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcc
Q 000888 630 KIGVRFDKPIPDGVD-LG----G-QCEGGH----GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKD 699 (1237)
Q Consensus 630 kvgV~Fd~~~~~~~~-l~----~-~c~~~~----~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~d 699 (1237)
..+|.|.+|||+||| +| . .|..+. .|+.-..++-++.|.|+ ....+..+|+. ..+-||||||
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~--~~~~~~~~~~~------a~~gvL~iDE 129 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGH--TAPKTKEILKR------AMGGVLFIDE 129 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhccc--chHHHHHHHHH------ccCcEEEEec
Confidence 346899999999999 33 2 122211 23322334556678886 22334444443 3446999999
Q ss_pred hhhhhcC------CcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCcccccccc
Q 000888 700 AEKSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDR 773 (1237)
Q Consensus 700 i~~~~~~------~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~ 773 (1237)
++.+... ..+..+.|-..|+...++++||++++... +|. |
T Consensus 130 i~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~-----------------------~~~-----~------ 175 (284)
T TIGR02880 130 AYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR-----------------------MDS-----F------ 175 (284)
T ss_pred hhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH-----H------
Confidence 9986432 12233344455565567999999987432 010 1
Q ss_pred CCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000888 774 GKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1237)
Q Consensus 774 ~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~ 812 (1237)
...+.+|.+||+..|+|+.++.+++.+||+..+.+
T Consensus 176 ----~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 176 ----FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred ----HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 12467899999999999999999999999987766
No 296
>PRK09183 transposase/IS protein; Provisional
Probab=97.79 E-value=4.5e-05 Score=86.09 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=48.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-cHHHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~-se~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
.+++|+||||+|||+||.+++..+ |..+..+++.++...+... ....+..++... ...+.+|+|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 579999999999999999998775 7777777777665332111 111233344433 235689999999865
No 297
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.77 E-value=0.0008 Score=81.16 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=89.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-------ccccccccccHHH------HHHHHHHHHh----------
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS-------SITSKWFGEGEKY------VKAVFSLASK---------- 1027 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~s-------eL~s~~~G~se~~------I~~lF~~A~k---------- 1027 (1237)
+-+||+||+|||||+.++.+++++|..++...-+ .+.....+....+ .......+.+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 4589999999999999999999999999887622 1111111111111 1112223322
Q ss_pred --cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEe-cCCCCCCcHHHH--------hhc
Q 000888 1028 --IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA-TNRPFDLDEAVI--------RRL 1096 (1237)
Q Consensus 1028 --~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaT-TN~p~~Ld~aLl--------rRF 1096 (1237)
..+.+|+|||+-..+... ..+..+.++..+ -.. ...+++++.| +..++..++..+ -|.
T Consensus 191 ~~~~~~liLveDLPn~~~~d----~~~~f~evL~~y----~s~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD----DSETFREVLRLY----VSI---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred cccCceEEEeeccchhhhhh----hHHHHHHHHHHH----Hhc---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 245699999997765432 223334444422 111 1233444333 223333332111 144
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhCCCC-------ChhhHHHHHHHcCCCcHHHHHHHHH
Q 000888 1097 PRRLMVNLPDAPNRAKILQVILAKEDLS-------PDVDFDAIANMTDGYSGSDLKNLCV 1149 (1237)
Q Consensus 1097 d~~I~v~~Pd~eeR~eILk~~L~~~~l~-------~d~dl~~LA~~T~GySgaDL~~L~~ 1149 (1237)
..|.|++-...-.++.|+.++..+... ....++.++....| ||+.++.
T Consensus 260 -~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~G----DIRsAIn 314 (634)
T KOG1970|consen 260 -SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGG----DIRSAIN 314 (634)
T ss_pred -ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCc----cHHHHHh
Confidence 467888878888888888877654322 23445566666555 5554443
No 298
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.75 E-value=5.5e-05 Score=85.96 Aligned_cols=139 Identities=22% Similarity=0.347 Sum_probs=78.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-c--EEEEeccccccccccccHHHHHHHHHHH----H-------hcCCcEEEEc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGA-N--FINISMSSITSKWFGEGEKYVKAVFSLA----S-------KIAPSVIFVD 1036 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~-~--fi~Id~seL~s~~~G~se~~I~~lF~~A----~-------k~~PsILfID 1036 (1237)
+.+||+||+|||||++++.+...+.- . ...+.++.. .+...+..+.+.. + .....|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 57999999999999999998876632 2 233444332 1222333222111 1 1123599999
Q ss_pred cchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcc------cCCccEEEEEecCCC---CCCcHHHHhhccccccCCCCCH
Q 000888 1037 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDA 1107 (1237)
Q Consensus 1037 EID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~------~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~~I~v~~Pd~ 1107 (1237)
|+..-. .+.-+.+.. .+++.+++.. .|... ..-.++.+||+++.. ..+++.++|.| .++.++.|+.
T Consensus 108 DlN~p~--~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMPQ--PDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCCC--CCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 998443 222222222 2444444432 12111 112468888988764 35788888888 6889999999
Q ss_pred HHHHHHHHHHHhh
Q 000888 1108 PNRAKILQVILAK 1120 (1237)
Q Consensus 1108 eeR~eILk~~L~~ 1120 (1237)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 299
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00062 Score=78.50 Aligned_cols=141 Identities=10% Similarity=0.017 Sum_probs=91.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEeccccccccccccHHHHHHHHHHHHh-----cCCcE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPSV 1032 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~-------------~fi~Id~seL~s~~~G~se~~I~~lF~~A~k-----~~PsI 1032 (1237)
+.+||+|+.|.||+.+|+++++.+-+ .++.++.. +.. -.-..++.+.+.+.. ....|
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCceE
Confidence 57899999999999999999998722 22233210 010 112334444444322 25579
Q ss_pred EEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHH
Q 000888 1033 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1237)
Q Consensus 1033 LfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1112 (1237)
++||++|.+. ....+.|+..++.. +..+++|.+|+.+..|-+.+++|+ ..+.|..++.++..+
T Consensus 94 vII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 94 LIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILA 156 (299)
T ss_pred EEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHH
Confidence 9999998772 23445677666663 456677777778899999999999 679999999888877
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHcCC
Q 000888 1113 ILQVILAKEDLSPDVDFDAIANMTDG 1138 (1237)
Q Consensus 1113 ILk~~L~~~~l~~d~dl~~LA~~T~G 1138 (1237)
.+... ++. +.....+|..+.|
T Consensus 157 ~l~~~----~~~-~~~a~~~a~~~~~ 177 (299)
T PRK07132 157 KLLSK----NKE-KEYNWFYAYIFSN 177 (299)
T ss_pred HHHHc----CCC-hhHHHHHHHHcCC
Confidence 76542 222 2333445555554
No 300
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0006 Score=76.72 Aligned_cols=121 Identities=7% Similarity=0.059 Sum_probs=78.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------EEEEeccccccccc-c--ccHHHHHHHHHHHHh---
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------FINISMSSITSKWF-G--EGEKYVKAVFSLASK--- 1027 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~--------------fi~Id~seL~s~~~-G--~se~~I~~lF~~A~k--- 1027 (1237)
.++..+||+||.|+||..+|.++|+.+-+. +..-..+++.--+. + -.-..++.+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 345789999999999999999999887221 00011122211000 0 112334444433221
Q ss_pred --cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCC
Q 000888 1028 --IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 1105 (1237)
Q Consensus 1028 --~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~P 1105 (1237)
....|++|+++|.|- ....|.||..++. ++.++++|.+|+.++.+.+.+++|+ ..+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 235799999999882 3455777777765 4567889999999999999999998 44666655
No 301
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.65 E-value=7.7e-05 Score=90.11 Aligned_cols=169 Identities=24% Similarity=0.285 Sum_probs=95.1
Q ss_pred HHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000888 915 EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 915 e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
.+..++++.+.| .|.|++.+|..+.-.+..-..+-.. .....+.-.+|||+|.|||||+.+.|.+++..
T Consensus 438 ~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~~--~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 438 PIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNPG--GKHKVRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred cHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCCC--CCceeccceeEEEecCCCccHHHHHHHHHhcC
Confidence 455557777776 6789999999988777653322110 00011222469999999999999999999887
Q ss_pred CCcEEEE---------eccccccccccccHHHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHH
Q 000888 995 GANFINI---------SMSSITSKWFGEGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1064 (1237)
Q Consensus 995 g~~fi~I---------d~seL~s~~~G~se~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ 1064 (1237)
...++.. .+... +-.-..|+.+ ...+-.|.+ +|.+|||+|.+-... ....++++.+ +.+-..
T Consensus 507 ~RAV~tTGqGASavGLTa~v~--KdPvtrEWTLEaGALVLADk---GvClIDEFDKMndqD-RtSIHEAMEQ--QSISIS 578 (854)
T KOG0477|consen 507 PRAVFTTGQGASAVGLTAYVR--KDPVTREWTLEAGALVLADK---GVCLIDEFDKMNDQD-RTSIHEAMEQ--QSISIS 578 (854)
T ss_pred cceeEeccCCccccceeEEEe--eCCccceeeeccCeEEEccC---ceEEeehhhhhcccc-cchHHHHHHh--cchhhh
Confidence 5444332 21110 0000111111 112233444 899999999994222 1222333321 111111
Q ss_pred hcCCcccCCccEEEEEecCCC-----------C--CCcHHHHhhccccccC
Q 000888 1065 WDGLRTKDTERILVLAATNRP-----------F--DLDEAVIRRLPRRLMV 1102 (1237)
Q Consensus 1065 ldgl~~~~~~~VlVIaTTN~p-----------~--~Ld~aLlrRFd~~I~v 1102 (1237)
--|+...-..+..||||+|.. + .|.+.+++|||....+
T Consensus 579 KAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 579 KAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred hhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 112222234678899999872 1 5668899999865555
No 302
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.64 E-value=0.00033 Score=80.47 Aligned_cols=166 Identities=23% Similarity=0.332 Sum_probs=98.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-----cccccccH--HHHHHHHHHHHhcCCcEEEEccchhh
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGE--KYVKAVFSLASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~-----s~~~G~se--~~I~~lF~~A~k~~PsILfIDEID~L 1041 (1237)
.+||.|.+||||-.+|++.-... ..||+.++|+.+- +..+|..+ +--..+|+.|.. +.+|+|||..+
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm 305 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM 305 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc
Confidence 49999999999999999976655 7899999998763 23333332 223457887766 78999999877
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHhcCCccc-------CCccEEEEEecCCC-------CCCcHHHHhhccccccCCCCCH
Q 000888 1042 LGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDA 1107 (1237)
Q Consensus 1042 ~~~r~~~~~~~a~~~il~eLL~~ldgl~~~-------~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~v~~Pd~ 1107 (1237)
. .++...|+..+....-. -..+|-||+||..+ ..+.+.+.-|+ .++.+..|..
T Consensus 306 S------------p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpL 372 (511)
T COG3283 306 S------------PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPL 372 (511)
T ss_pred C------------HHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCcc
Confidence 2 23333344444322111 12468999999763 12333444455 4566677766
Q ss_pred HHHHH--------HHHHHHhhCCCC-Chhh---HHHHHHHcCCCcHHHHHHHHHHHHH
Q 000888 1108 PNRAK--------ILQVILAKEDLS-PDVD---FDAIANMTDGYSGSDLKNLCVTAAH 1153 (1237)
Q Consensus 1108 eeR~e--------ILk~~L~~~~l~-~d~d---l~~LA~~T~GySgaDL~~L~~~Aa~ 1153 (1237)
.+|.. ++..+..+.++. +..+ +..|.+.--.-+.++|.|.+-+|+.
T Consensus 373 Rer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 373 RERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred ccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 66543 333333444433 2222 3333333333356777777666654
No 303
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.62 E-value=0.0012 Score=74.43 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=82.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--CcE-EEEecccc-------------cccc------ccccHHHHHHHHHH
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATE--AG--ANF-INISMSSI-------------TSKW------FGEGEKYVKAVFSL 1024 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~e--Lg--~~f-i~Id~seL-------------~s~~------~G~se~~I~~lF~~ 1024 (1237)
..+-|.|+|++|+|||+||+.+++. .. +.. +.++...- +... ....+.....+.+.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4467999999999999999999988 32 222 22333211 0000 01122333444444
Q ss_pred HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCC
Q 000888 1025 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1025 A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~ 1104 (1237)
... .+++|+||+++... .+..+...+... ..+.-||.||...... ...... ...+.+..
T Consensus 98 L~~-~~~LlVlDdv~~~~--------------~~~~l~~~~~~~----~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 98 LKD-KRCLLVLDDVWDEE--------------DLEELREPLPSF----SSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HCC-TSEEEEEEEE-SHH--------------HH-------HCH----HSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hcc-ccceeeeeeecccc--------------cccccccccccc----cccccccccccccccc-cccccc-cccccccc
Confidence 333 48999999998541 122222222111 1234555566653221 111111 35788999
Q ss_pred CCHHHHHHHHHHHHhhCC----CCChhhHHHHHHHcCCCcHHHHHHH
Q 000888 1105 PDAPNRAKILQVILAKED----LSPDVDFDAIANMTDGYSGSDLKNL 1147 (1237)
Q Consensus 1105 Pd~eeR~eILk~~L~~~~----l~~d~dl~~LA~~T~GySgaDL~~L 1147 (1237)
.+.++-.++|........ .........|++.+.| .+-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 999999999999875433 1123346788999887 44455444
No 304
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.60 E-value=0.00089 Score=75.86 Aligned_cols=132 Identities=16% Similarity=0.188 Sum_probs=73.4
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc---
Q 000888 937 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS--- 1008 (1237)
Q Consensus 937 I~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id~seL~s--- 1008 (1237)
+.|+.-+++.+...+...+.+ ....+| --+=|||++||||.++++.||+.+ ..+++..-.+.+--
T Consensus 84 lfGQHla~~~Vv~alk~~~~n------~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWAN------PNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcC------CCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 356666666655555433322 222333 567799999999999999999987 23333321111100
Q ss_pred cccc-ccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC
Q 000888 1009 KWFG-EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1084 (1237)
Q Consensus 1009 ~~~G-~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1084 (1237)
+++. -.++.-.++-..++..+.+|.++||+|.|- ..+-.++.-||..-......+..+.++|.-+|.
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp---------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP---------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC---------HhHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 0000 012333445566677788999999999882 222233333433222222234567777777765
No 305
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.57 E-value=0.00011 Score=90.06 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=75.4
Q ss_pred eeC-CeeEEcCCCCcceeecCCCCccceEEEEEEe-------cCCceEEEEEEeCC-CceEEcCeeecCCCeeEccCCCE
Q 000888 142 ICA-SIFTVGSSRQCNFPLKDQAISAVLCKIKHVQ-------SEGSAVAMVESIGS-KGLQVNGKNLKKNTSCELRSGDE 212 (1237)
Q Consensus 142 i~~-~~~tvGr~~~Cd~~l~~~~~s~~~c~i~~~~-------~~~~~~~~led~s~-nGt~VNg~~~~k~~~~~L~~gDe 212 (1237)
+.+ ..|+|||-..||+.+-.++||+.||.|..-. +.++.-.||.|+++ -|||+|..++.+.+-+.++-|+.
T Consensus 173 l~~~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg~v 252 (793)
T KOG1881|consen 173 LKGAAACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVGHV 252 (793)
T ss_pred cccceeEEecccCCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhhhHHHH
Confidence 544 6799999999999999999999999988631 22344578999988 88999999999999999999999
Q ss_pred EEEeecCCeeEEEEecch
Q 000888 213 VVFGSLGNHAYIFQQLLN 230 (1237)
Q Consensus 213 I~f~~~~~~ayiF~~l~~ 230 (1237)
+-|+...+ +||||.-..
T Consensus 253 ~~fggsTr-l~i~Qgp~e 269 (793)
T KOG1881|consen 253 ARFGGSTR-LYIFQGPEE 269 (793)
T ss_pred HHhcCceE-EEEeeCCCc
Confidence 99998887 999996533
No 306
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.56 E-value=0.00035 Score=79.97 Aligned_cols=161 Identities=20% Similarity=0.346 Sum_probs=95.8
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH-H--HhCCcEEEEecccc------
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA-T--EAGANFINISMSSI------ 1006 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA-~--eLg~~fi~Id~seL------ 1006 (1237)
.+.|+.+..+.+.+++..... ..-.++|++.||.|+|||+|..... . +.|-+|+.+.....
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 346777777777776653111 1223689999999999999655443 3 55666665543221
Q ss_pred ---------------ccccccccHHHHHHHHHHHHhc---CC-cEEE-EccchhhhcCCCCCchhHHHHHHHHHHHHHhc
Q 000888 1007 ---------------TSKWFGEGEKYVKAVFSLASKI---AP-SVIF-VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1066 (1237)
Q Consensus 1007 ---------------~s~~~G~se~~I~~lF~~A~k~---~P-sILf-IDEID~L~~~r~~~~~~~a~~~il~eLL~~ld 1066 (1237)
..+.+|.....+..+....++. .. .||| +||||.+++.. .++++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHH
Confidence 1123333334444444433321 11 2555 58999775332 133444443
Q ss_pred CCcccCCccEEEEEecCCCCC---CcHHHHhhcccc-ccC-CCCCHHHHHHHHHHHH
Q 000888 1067 GLRTKDTERILVLAATNRPFD---LDEAVIRRLPRR-LMV-NLPDAPNRAKILQVIL 1118 (1237)
Q Consensus 1067 gl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~~-I~v-~~Pd~eeR~eILk~~L 1118 (1237)
.+......++.||+.|.+.+. |...+.+||..+ |++ +....++-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 333344678999999988764 446778899765 444 4456888888888877
No 307
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.56 E-value=0.00019 Score=85.27 Aligned_cols=186 Identities=22% Similarity=0.310 Sum_probs=104.6
Q ss_pred HHHHHHHhcCcCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 000888 914 NEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 993 (1237)
Q Consensus 914 ~e~e~~ll~~ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e 993 (1237)
.++.+.+-..+.| .|.|.+++|+.+.-++..--+. .+-.+--.+.--+|||.|.|||.|+.|.+.+-+-
T Consensus 319 ~d~Ye~is~sIAP---------SIfG~~DiKkAiaClLFgGsrK--~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkv 387 (729)
T KOG0481|consen 319 PDVYERISKSIAP---------SIFGHEDIKKAIACLLFGGSRK--RLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKV 387 (729)
T ss_pred ccHHHHHhhccCc---------hhcCchhHHHHHHHHhhcCccc--cCCCcceeccceeEEEecCCchhHHHHHHHHHhc
Confidence 3445545455554 5789999999998888653221 1111111222357999999999999999999776
Q ss_pred hCCcEEEEe----ccccccccccccH---HHH-HHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHH--HHHHH
Q 000888 994 AGANFINIS----MSSITSKWFGEGE---KYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMK--NEFMV 1063 (1237)
Q Consensus 994 Lg~~fi~Id----~seL~s~~~G~se---~~I-~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il--~eLL~ 1063 (1237)
..+-++.-- .+.|.......+. -++ ....-.|. .+|++|||+|.+- ..+.-+....+ +++-.
T Consensus 388 sPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLAD---gGVvCIDEFDKMr-----e~DRVAIHEAMEQQTISI 459 (729)
T KOG0481|consen 388 SPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLAD---GGVVCIDEFDKMR-----EDDRVAIHEAMEQQTISI 459 (729)
T ss_pred CceEEEecCCCcccccceeeEEecCCcceEEEecceEEEec---CCEEEeehhhccC-----chhhhHHHHHHHhhhHHH
Confidence 654444311 1111110000000 000 00111222 3799999999982 22222222222 23333
Q ss_pred HhcCCcccCCccEEEEEecCCCC-------------CCcHHHHhhccccccCCCC-CHHHHHHHHHHHH
Q 000888 1064 NWDGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMVNLP-DAPNRAKILQVIL 1118 (1237)
Q Consensus 1064 ~ldgl~~~~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~v~~P-d~eeR~eILk~~L 1118 (1237)
.--|+.+.-+.+.-|+|++|.+. ++-+.+++|||.++.+..- +.+.-..|.++.+
T Consensus 460 AKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 460 AKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred hhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 44567666778899999999752 3347999999998877543 3333334444433
No 308
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00097 Score=69.68 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
...++++|+||+|||+++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3679999999999999999999887
No 309
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.50 E-value=0.00048 Score=81.39 Aligned_cols=103 Identities=19% Similarity=0.347 Sum_probs=58.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccccccccc------cHHHHHHHHHHHHhcCCcEEEEccch
Q 000888 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSKWFGE------GEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1237)
Q Consensus 967 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-~fi~Id~seL~s~~~G~------se~~I~~lF~~A~k~~PsILfIDEID 1039 (1237)
..+++|++|+|++|+|||+|+-.....+.. .-.++....++...... ....+..+.....+ ...||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 346799999999999999999999888754 22222222221110000 01112222222212 23499999997
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC
Q 000888 1040 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1237)
Q Consensus 1040 ~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p 1085 (1237)
.- ...+--.+.+++..+. ...+++|+|+|.+
T Consensus 138 V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred cc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 33 2223334445555442 2568999999974
No 310
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.43 E-value=0.0018 Score=75.36 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=40.0
Q ss_pred cccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 000888 426 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 498 (1237)
Q Consensus 426 sf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~ 498 (1237)
+|++|-.- ++.+..|....-..... ....+.+||+||+| ..+..||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEE
Confidence 47775444 66666655444322111 12345799999999 99999999999999876543
No 311
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.34 E-value=0.0004 Score=83.61 Aligned_cols=171 Identities=23% Similarity=0.320 Sum_probs=105.4
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---------EEEecccc
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSSI 1006 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f---------i~Id~seL 1006 (1237)
.|.|.+.+|+.+.-++..-.. ..+.++...+.-.+|||.|.|-+.|+.|.+++.+.....+ +-+..+-.
T Consensus 302 SI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 578999999998877754322 1222333333445799999999999999999988763222 12222111
Q ss_pred ccccccccHHHHH-HHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHh--cCCcccCCccEEEEEecC
Q 000888 1007 TSKWFGEGEKYVK-AVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATN 1083 (1237)
Q Consensus 1007 ~s~~~G~se~~I~-~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~l--dgl~~~~~~~VlVIaTTN 1083 (1237)
..+- ..|..+. ...-.|.+ +|++|||+|.+ +..+..++..++.+--+.+ -|+...-+.+.-|||++|
T Consensus 380 tD~e--TGERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQE--TGERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccc--cchhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 1111 1222221 12334444 89999999998 3444555555555433333 355666678999999999
Q ss_pred CCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHH
Q 000888 1084 RPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVIL 1118 (1237)
Q Consensus 1084 ~p~-------------~Ld~aLlrRFd~~I~v-~~Pd~eeR~eILk~~L 1118 (1237)
..+ .|++.+++|||..+.+ +.-+...-..|-.+.+
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 853 5788999999976554 4445444445544444
No 312
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.34 E-value=0.00047 Score=67.39 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAG 995 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg 995 (1237)
|.|+||||+|||++|+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 313
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.32 E-value=0.0094 Score=72.22 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1005 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~se 1005 (1237)
++..++|+|++|+|||+++..+|..+ +..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 45789999999999999999999877 55666666543
No 314
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.32 E-value=0.00066 Score=74.96 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=41.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc--cccc--------cccccHHHHHHHHHHHH--hcCCcEEEEcc
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLAS--KIAPSVIFVDE 1037 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~se--L~s~--------~~G~se~~I~~lF~~A~--k~~PsILfIDE 1037 (1237)
+..+||||+||+|||++|+.++.. .-++..+.+. +.+. ....+-..+...+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 466999999999999999999731 2233333321 0000 00111122222223332 24578999999
Q ss_pred chhhhc
Q 000888 1038 VDSMLG 1043 (1237)
Q Consensus 1038 ID~L~~ 1043 (1237)
|+.|..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 998864
No 315
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.31 E-value=0.00099 Score=72.14 Aligned_cols=74 Identities=22% Similarity=0.418 Sum_probs=50.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc-----------------------cccHHHHHHHHH
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVFS 1023 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~-----------------------G~se~~I~~lF~ 1023 (1237)
..-++|+||||+|||+++..++... +..++.++..++....+ .+....+..+..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3569999999999999999988654 66788888765210000 000112344444
Q ss_pred HHHhcCCcEEEEccchhhhc
Q 000888 1024 LASKIAPSVIFVDEVDSMLG 1043 (1237)
Q Consensus 1024 ~A~k~~PsILfIDEID~L~~ 1043 (1237)
.+....+.+|+||-|..++.
T Consensus 92 ~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHhhcCccEEEEeCcHHHhH
Confidence 45555789999999998864
No 316
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.29 E-value=0.0012 Score=69.56 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=46.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cccc-----------------------cH-----
Q 000888 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE-----------------------GE----- 1015 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~------~~G~-----------------------se----- 1015 (1237)
+|++||||+|||+|+..++.+. |.+++.++..+-... .+|- .+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887765 667777665321100 0000 00
Q ss_pred HHHHHHHHHHHhcCCcEEEEccchhhhc
Q 000888 1016 KYVKAVFSLASKIAPSVIFVDEVDSMLG 1043 (1237)
Q Consensus 1016 ~~I~~lF~~A~k~~PsILfIDEID~L~~ 1043 (1237)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124455555667899999999998764
No 317
>PHA00729 NTP-binding motif containing protein
Probab=97.28 E-value=0.00057 Score=75.56 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANF 998 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~f 998 (1237)
.+++|+|+||||||+||.+||+.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999986433
No 318
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.28 E-value=0.0004 Score=89.39 Aligned_cols=159 Identities=22% Similarity=0.275 Sum_probs=103.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccc-------cHHHHHHHH---HH--HHhcCCcEEEEccchh
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGE-------GEKYVKAVF---SL--ASKIAPSVIFVDEVDS 1040 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~-------se~~I~~lF---~~--A~k~~PsILfIDEID~ 1040 (1237)
+|++||||.|||+.+.++|.++|+.++..+.+...++.... ....+...| .. .......||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 69999999999999999999999999999998765443221 112222233 00 0011223999999998
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 000888 1041 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 1120 (1237)
Q Consensus 1041 L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk~~L~~ 1120 (1237)
+++ .+ +-.+..+...... ..+-||+++|........-..|....++|..|+.+.+...+..++..
T Consensus 440 ~~~-~d--------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-ED--------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-hh--------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 865 21 2223333333321 23456777887766666555554466999999999999988888876
Q ss_pred CCCC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 000888 1121 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 1150 (1237)
Q Consensus 1121 ~~l~-~d~dl~~LA~~T~GySgaDL~~L~~~ 1150 (1237)
+.+. .+..++++.+.+ ++||++.+..
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHH
Confidence 6554 445577777776 4466655443
No 319
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.27 E-value=0.00051 Score=84.35 Aligned_cols=176 Identities=25% Similarity=0.325 Sum_probs=98.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccccc-----ccccccHHHHHHHHHHHHh-----cCCcEEEEccc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITS-----KWFGEGEKYVKAVFSLASK-----IAPSVIFVDEV 1038 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL--g~~fi~Id~seL~s-----~~~G~se~~I~~lF~~A~k-----~~PsILfIDEI 1038 (1237)
-.+||.|.|||||-.+|+++-+.. ..+|+.++|..+.. .++|..+......+..-++ ..-..+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 359999999999999999997665 67899999976632 3333322222111111111 12369999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCC-------CCcHHHHhhccccccCCCCCHHHHH
Q 000888 1039 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF-------DLDEAVIRRLPRRLMVNLPDAPNRA 1111 (1237)
Q Consensus 1039 D~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~v~~Pd~eeR~ 1111 (1237)
..| ....+..+-+++++-.+.--+... ....|-||++|+++- .+.+.+.=|+ ..+.+.+|...+|.
T Consensus 417 gd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R~ 489 (606)
T COG3284 417 GDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRERS 489 (606)
T ss_pred hhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhccc
Confidence 987 333344444555443222222222 346789999998741 2222332244 24555677766665
Q ss_pred H---HHHHHHhhCCCC-Chhh---HHHH-HHHcCCCcHHHHHHHHHHHHHH
Q 000888 1112 K---ILQVILAKEDLS-PDVD---FDAI-ANMTDGYSGSDLKNLCVTAAHR 1154 (1237)
Q Consensus 1112 e---ILk~~L~~~~l~-~d~d---l~~L-A~~T~GySgaDL~~L~~~Aa~~ 1154 (1237)
+ .|..++.+..-. -.++ +..| +..-.| +.++|.++++.++..
T Consensus 490 d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l 539 (606)
T COG3284 490 DRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAAL 539 (606)
T ss_pred ccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHc
Confidence 4 444554443221 1222 2222 223344 667888887777653
No 320
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.24 E-value=0.0026 Score=72.90 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 000888 436 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 499 (1237)
Q Consensus 436 e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~ 499 (1237)
++.+..|..+.-..... ....+-+||+||+| ..+.+||+++|++++.++..+
T Consensus 10 ~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~ 61 (305)
T TIGR00635 10 EKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPG--LGKTTLAHIIANEMGVNLKIT 61 (305)
T ss_pred HHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEe
Confidence 66666666554322221 12234699999999 999999999999988765544
No 321
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0087 Score=66.92 Aligned_cols=173 Identities=19% Similarity=0.216 Sum_probs=100.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccc---------cccccccc--------HHHHHHHHHHHHhc-CC
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI---------TSKWFGEG--------EKYVKAVFSLASKI-AP 1030 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg---~~fi~Id~seL---------~s~~~G~s--------e~~I~~lF~~A~k~-~P 1030 (1237)
-+.++|+-|+|||++.|+++..+. ...+.++...+ +......+ +..-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 588999999999999997776663 22334443332 11111111 12223344444444 45
Q ss_pred cEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCc-H---HHHhhccccccCCCCC
Q 000888 1031 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD-E---AVIRRLPRRLMVNLPD 1106 (1237)
Q Consensus 1031 sILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld-~---aLlrRFd~~I~v~~Pd 1106 (1237)
-++++||.+.+. ...-++++.+.+- -.+. ...-.+++||-..--..+- + ++..|++.+|.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~nl----~~~~--~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTNL----EEDS--SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHhh----cccc--cCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999883 2222333322221 1111 1113355555432211111 1 3344887778889999
Q ss_pred HHHHHHHHHHHHhhCC----CCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 000888 1107 APNRAKILQVILAKED----LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 1156 (1237)
Q Consensus 1107 ~eeR~eILk~~L~~~~----l~~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~ai 1156 (1237)
.++-..+++..++..+ +..+..+..++..+.| .+.-+.++|..|...+.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~ 254 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAY 254 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 9989999999987654 3345557788888888 55678788777766544
No 322
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.14 E-value=0.0057 Score=82.64 Aligned_cols=172 Identities=16% Similarity=0.270 Sum_probs=93.6
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEecccc---
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---INISMSSI--- 1006 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f---i~Id~seL--- 1006 (1237)
.+++++|++...+.|.+++... ....+-|-|+|++|+|||+||+++++.+...| +.++...+
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 4678899999999888877531 12235689999999999999999998874332 11211000
Q ss_pred ccccc----cc-------cHHHHHHH-------------HHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHH
Q 000888 1007 TSKWF----GE-------GEKYVKAV-------------FSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1062 (1237)
Q Consensus 1007 ~s~~~----G~-------se~~I~~l-------------F~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL 1062 (1237)
...+. .. ....+..+ ....-+..+.+|+||+++.. ..+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~ 315 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALA 315 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHH
Confidence 00000 00 00011111 11111235678999998733 1222222
Q ss_pred HHhcCCcccCCccEEEEEecCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCChhh----HHHHHHHc
Q 000888 1063 VNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD----FDAIANMT 1136 (1237)
Q Consensus 1063 ~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~d----l~~LA~~T 1136 (1237)
...+.+ ..+ -.||.||.. ..+.+ ..+.++.+..|+.++..++|..++-+....+ .+ ..++++++
T Consensus 316 ~~~~~~---~~G-srIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c 385 (1153)
T PLN03210 316 GQTQWF---GSG-SRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRA 385 (1153)
T ss_pred hhCccC---CCC-cEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHh
Confidence 222211 112 234445654 33333 3567788999999999999988764433222 22 23456666
Q ss_pred CCCc
Q 000888 1137 DGYS 1140 (1237)
Q Consensus 1137 ~GyS 1140 (1237)
.|..
T Consensus 386 ~GLP 389 (1153)
T PLN03210 386 GNLP 389 (1153)
T ss_pred CCCc
Confidence 6654
No 323
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=97.09 E-value=0.0011 Score=72.20 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=79.9
Q ss_pred cCCCccCCCcchh--hcccCCCCc--ceeeeC-CeeEEcCCC-CcceeecCCCCccceEEEE-E-E--ecCC-----ceE
Q 000888 117 QNPTFETSTPWCR--LLSQSGQNS--NVPICA-SIFTVGSSR-QCNFPLKDQAISAVLCKIK-H-V--QSEG-----SAV 181 (1237)
Q Consensus 117 ~~~~~~~~~pWgr--L~s~~~~~~--~l~i~~-~~~tvGr~~-~Cd~~l~~~~~s~~~c~i~-~-~--~~~~-----~~~ 181 (1237)
.+-.++++.||.| ||+-....+ .+.|.. +.|.+||.. --||-++.++-|+-||-|. + + ++.+ .+-
T Consensus 161 y~eppearkP~kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvk 240 (293)
T KOG1882|consen 161 YNEPPEARKPKKRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVK 240 (293)
T ss_pred ecCCchhcCchhheecccccCCcccchheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceeee
Confidence 5678888999875 777654443 444544 889999955 4577777888899999886 2 2 2222 446
Q ss_pred EEEEEeCC-CceEEcCeeecCCCeeEccCCCEEEEeecCC
Q 000888 182 AMVESIGS-KGLQVNGKNLKKNTSCELRSGDEVVFGSLGN 220 (1237)
Q Consensus 182 ~~led~s~-nGt~VNg~~~~k~~~~~L~~gDeI~f~~~~~ 220 (1237)
.||=|+++ ||||+|.++|.--.-..|..+|.|-|+.+..
T Consensus 241 pYiiDLgS~NgTfLNnk~IepqRYyEL~ekDvlkfgfs~r 280 (293)
T KOG1882|consen 241 PYIIDLGSGNGTFLNNKVIEPQRYYELREKDVLKFGFSSR 280 (293)
T ss_pred eEEEecCCCCcceecCcccCchheeeeecCceeeeccchH
Confidence 89999987 9999999999999999999999999985543
No 324
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.09 E-value=0.00047 Score=67.71 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~ 1003 (1237)
|+|.|+||+||||+|+.||+.++++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876664
No 325
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.08 E-value=0.012 Score=65.84 Aligned_cols=111 Identities=23% Similarity=0.356 Sum_probs=75.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHHHh----cCCCcEEEEEeeccCCCccccCCCCCccccccC
Q 000888 677 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLE----KLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 752 (1237)
Q Consensus 677 i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~~~~~~~lk~~L~----~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~g 752 (1237)
|..|++++.. +....|||+||.. +......|..||+.|+ .-|.||+|..+.|+---++|. +.
T Consensus 94 l~~l~~~l~~--~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~----------~~ 159 (249)
T PF05673_consen 94 LPELLDLLRD--RPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES----------FS 159 (249)
T ss_pred HHHHHHHHhc--CCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh----------hh
Confidence 4455556553 3578999999976 8888999999999994 457899999999987433333 00
Q ss_pred CcccccccccCCCccccccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhh
Q 000888 753 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 811 (1237)
Q Consensus 753 r~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~ 811 (1237)
.+.. +.+..+ .-.+..+--=.|+.||+..+.|..|+.+.-++|.+....
T Consensus 160 d~~~-~~~~ei---------h~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 160 DRED-IQDDEI---------HPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred hccC-CCcccc---------CcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 0000 000001 122333333468899999999999999999999986653
No 326
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.04 E-value=0.0037 Score=74.23 Aligned_cols=98 Identities=22% Similarity=0.409 Sum_probs=62.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cccc--------cHHHHHHHHHHHHhcCCc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAPS 1031 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~------~~G~--------se~~I~~lF~~A~k~~Ps 1031 (1237)
+..-+||+|+||+|||+|+..+|..+ +.++++++..+-... .+|. .+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 33569999999999999999998766 457777776432111 0110 122345566667777899
Q ss_pred EEEEccchhhhcCCC--CCchhHHHHHHHHHHHHHhc
Q 000888 1032 VIFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNWD 1066 (1237)
Q Consensus 1032 ILfIDEID~L~~~r~--~~~~~~a~~~il~eLL~~ld 1066 (1237)
+|+||+|..+..... .++.....+.++..|....+
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak 197 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK 197 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999998864331 12223344555555554443
No 327
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.04 E-value=0.0053 Score=73.90 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=54.3
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCcccc
Q 000888 690 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 769 (1237)
Q Consensus 690 ~~p~ILfi~di~~~~~~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r 769 (1237)
.+..||||||||.+-.. ..+.|-+.|+. |.+++||+||....
T Consensus 91 g~~~vL~IDEi~~l~~~---~q~~LL~~le~--~~iilI~att~n~~--------------------------------- 132 (413)
T PRK13342 91 GRRTILFIDEIHRFNKA---QQDALLPHVED--GTITLIGATTENPS--------------------------------- 132 (413)
T ss_pred CCceEEEEechhhhCHH---HHHHHHHHhhc--CcEEEEEeCCCChh---------------------------------
Confidence 36679999999985432 23445566654 89999999885431
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000888 770 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1237)
Q Consensus 770 ~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~ 812 (1237)
..++.+|..|+ ..+.+..++.++...+++..+..
T Consensus 133 --------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 133 --------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred --------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 11456677778 78999999999888888865543
No 328
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0085 Score=73.38 Aligned_cols=73 Identities=10% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccc
Q 000888 691 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 770 (1237)
Q Consensus 691 ~p~ILfi~di~~~~~~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~ 770 (1237)
..-||||||+|.+- .+..+.|-..|+..++.+++|++++.++.
T Consensus 117 ~~kVvIIDE~h~Lt---~~a~~~LLk~LE~p~~~vv~Ilattn~~k---------------------------------- 159 (472)
T PRK14962 117 KYKVYIIDEVHMLT---KEAFNALLKTLEEPPSHVVFVLATTNLEK---------------------------------- 159 (472)
T ss_pred CeEEEEEEChHHhH---HHHHHHHHHHHHhCCCcEEEEEEeCChHh----------------------------------
Confidence 34599999999863 23455677788888899999999885431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000888 771 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 810 (1237)
Q Consensus 771 ~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL 810 (1237)
+.++|..|+ ..+++..|+.++...+++...
T Consensus 160 ---------l~~~L~SR~-~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 160 ---------VPPTIISRC-QVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred ---------hhHHHhcCc-EEEEECCccHHHHHHHHHHHH
Confidence 456677788 689999999998877777554
No 329
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.99 E-value=0.0026 Score=83.28 Aligned_cols=134 Identities=25% Similarity=0.326 Sum_probs=84.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc--cccccc-------HHH-HHHHHHHHHhcCCcEEEEccchh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEG-------EKY-VKAVFSLASKIAPSVIFVDEVDS 1040 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s--~~~G~s-------e~~-I~~lF~~A~k~~PsILfIDEID~ 1040 (1237)
+++||.|.||+|||+|..|+|+..|-.+++++.++-.. ..+|.. +-. ...-|-.|.+ ...-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhhh
Confidence 45999999999999999999999999999999876311 112211 111 1122333433 336788999963
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHhcCC----------cccCCccEEEEEecCCC------CCCcHHHHhhccccccCCC
Q 000888 1041 MLGRRENPGEHEAMRKMKNEFMVNWDGL----------RTKDTERILVLAATNRP------FDLDEAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1041 L~~~r~~~~~~~a~~~il~eLL~~ldgl----------~~~~~~~VlVIaTTN~p------~~Ld~aLlrRFd~~I~v~~ 1104 (1237)
- ...++.-|-..+|-- .-....++.|+||-|.- ..|+..++.|| .++.+..
T Consensus 1623 a------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~ 1689 (4600)
T COG5271 1623 A------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDG 1689 (4600)
T ss_pred h------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecc
Confidence 2 122333333333211 11123578888888764 47999999999 5667776
Q ss_pred CCHHHHHHHHHHHH
Q 000888 1105 PDAPNRAKILQVIL 1118 (1237)
Q Consensus 1105 Pd~eeR~eILk~~L 1118 (1237)
.+.++...|...+.
T Consensus 1690 lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1690 LTTDDITHIANKMY 1703 (4600)
T ss_pred cccchHHHHHHhhC
Confidence 66666666655543
No 330
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.94 E-value=0.0059 Score=74.29 Aligned_cols=98 Identities=24% Similarity=0.413 Sum_probs=62.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc------ccc--------cHHHHHHHHHHHHhcCCc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FGE--------GEKYVKAVFSLASKIAPS 1031 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~------~G~--------se~~I~~lF~~A~k~~Ps 1031 (1237)
+..-+||+|+||+|||+|+..+|... +..+++++..+-.... +|. .+..+..++....+..|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 33568999999999999999998766 6778888865432111 111 112345566667777899
Q ss_pred EEEEccchhhhcCCCC--CchhHHHHHHHHHHHHHhc
Q 000888 1032 VIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWD 1066 (1237)
Q Consensus 1032 ILfIDEID~L~~~r~~--~~~~~a~~~il~eLL~~ld 1066 (1237)
+|+||+|..+...... .+.....+.++..|....+
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak 195 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK 195 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999988643211 2233344555555554443
No 331
>PRK08118 topology modulation protein; Reviewed
Probab=96.93 E-value=0.0018 Score=68.44 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~ 1003 (1237)
..|+++||||+|||+||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 469999999999999999999999999998874
No 332
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.93 E-value=0.00029 Score=74.68 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcE
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA---GANF 998 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL---g~~f 998 (1237)
+++|+|+||+||||+++.++..+ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 58999999999999999999888 5553
No 333
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.92 E-value=0.012 Score=67.96 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=56.0
Q ss_pred CeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCcccccc
Q 000888 692 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 771 (1237)
Q Consensus 692 p~ILfi~di~~~~~~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~ 771 (1237)
+-||+|||+|.+ +..+..+.|+..++..++++.+|.+++..+
T Consensus 101 ~~vliiDe~d~l--~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~------------------------------------ 142 (316)
T PHA02544 101 GKVIIIDEFDRL--GLADAQRHLRSFMEAYSKNCSFIITANNKN------------------------------------ 142 (316)
T ss_pred CeEEEEECcccc--cCHHHHHHHHHHHHhcCCCceEEEEcCChh------------------------------------
Confidence 458999999974 223355677777888888888888877442
Q ss_pred ccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhhhh
Q 000888 772 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1237)
Q Consensus 772 ~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL~~ 812 (1237)
++.++|..|| ..+.++.|+.+.+..+++..+.+
T Consensus 143 -------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 143 -------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred -------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 1467788889 68999999999999988865443
No 334
>PF14516 AAA_35: AAA-like domain
Probab=96.88 E-value=0.0076 Score=70.59 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=91.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccccH------------------------------
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE------------------------------ 1015 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~~~G~se------------------------------ 1015 (1237)
|..-+.|+||..+|||+|...+.+.+ +...+.+++..+-...+...+
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 34579999999999999998887766 788888888664221111111
Q ss_pred -HHHHHHHHH---HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCccc-----CCccEEEEEecCCCC
Q 000888 1016 -KYVKAVFSL---ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----DTERILVLAATNRPF 1086 (1237)
Q Consensus 1016 -~~I~~lF~~---A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~-----~~~~VlVIaTTN~p~ 1086 (1237)
..+...|+. .....|-||+|||||.++.... +...|+..++..... ...++.+|.+.....
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~----------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~ 179 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ----------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED 179 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc----------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccc
Confidence 111222322 1123578999999999974321 112222222221111 112333333322211
Q ss_pred CCcHHH-Hhhc--cccccCCCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 000888 1087 DLDEAV-IRRL--PRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 1151 (1237)
Q Consensus 1087 ~Ld~aL-lrRF--d~~I~v~~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySgaDL~~L~~~A 1151 (1237)
.+.... .+-| ...|.++.-+.++...+++.+-.. . ....++.|-..+.|... =+..+|...
T Consensus 180 ~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP~-Lv~~~~~~l 243 (331)
T PF14516_consen 180 YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHPY-LVQKACYLL 243 (331)
T ss_pred ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCHH-HHHHHHHHH
Confidence 121111 1123 345677777888888887766322 2 23348888889988653 333334333
No 335
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0017 Score=76.16 Aligned_cols=121 Identities=15% Similarity=0.158 Sum_probs=79.2
Q ss_pred eeccCCCCCCCC-CCCCCCCCC-ccccccccccccCCCcchhHHHHHHHHHHHHhhhcc-CCCeEEEEcchhhhhcCCcc
Q 000888 633 VRFDKPIPDGVD-LGGQCEGGH-GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESR-SCPFILFMKDAEKSIAGNSD 709 (1237)
Q Consensus 633 V~Fd~~~~~~~~-l~~~c~~~~-~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~-~~p~ILfi~di~~~~~~~~~ 709 (1237)
.+|-+|||+||| ||..-.... .-|..-+|--- ...-|+.++|.+..... -.-.||||||||.+=-.++|
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~--------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD 122 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS--------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQD 122 (436)
T ss_pred eEEECCCCCCHHHHHHHHHHhhCCceEEeccccc--------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhh
Confidence 689999999999 331111111 11333333211 33456677777744222 34699999999995556666
Q ss_pred hhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccccccCCCchHHHHHHhhhCC
Q 000888 710 SYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFP 789 (1237)
Q Consensus 710 ~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF~ 789 (1237)
+ |-+.++. |.|++||+||-..+ ++++.+|.-|-
T Consensus 123 ~---lLp~vE~--G~iilIGATTENPs-----------------------------------------F~ln~ALlSR~- 155 (436)
T COG2256 123 A---LLPHVEN--GTIILIGATTENPS-----------------------------------------FELNPALLSRA- 155 (436)
T ss_pred h---hhhhhcC--CeEEEEeccCCCCC-----------------------------------------eeecHHHhhhh-
Confidence 6 5677766 99999999997654 22566666666
Q ss_pred CeEEEeCCCHHHHHHHHHH
Q 000888 790 NKVTIHMPQDEALLASWKH 808 (1237)
Q Consensus 790 ~~IeI~LPdeE~RL~IwK~ 808 (1237)
+.+++..=+.++-.+.+++
T Consensus 156 ~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred heeeeecCCHHHHHHHHHH
Confidence 6777777788877777776
No 336
>PRK07261 topology modulation protein; Provisional
Probab=96.87 E-value=0.0024 Score=67.72 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=30.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1005 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~se 1005 (1237)
.|+|+|+||+|||+||+.|+..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 5899999999999999999999999988876533
No 337
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0057 Score=78.71 Aligned_cols=139 Identities=23% Similarity=0.338 Sum_probs=98.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccc--cccccccHHHHHHHHHHHHhc-CCcEEEEcc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDE 1037 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL----------g~~fi~Id~seL~--s~~~G~se~~I~~lF~~A~k~-~PsILfIDE 1037 (1237)
++-+|.|.||+|||.++.-+|+.. +..++.+++..+. .++.|+.+..++.+..++... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 577999999999999999999876 3456777776553 356688899999999988844 556889999
Q ss_pred chhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC-----CCCCcHHHHhhccccccCCCCCHHHHHH
Q 000888 1038 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAK 1112 (1237)
Q Consensus 1038 ID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~-----p~~Ld~aLlrRFd~~I~v~~Pd~eeR~e 1112 (1237)
++-+.+...+.+ .-...+-|--.+ .++.+.+|+||.. ...-+|++-+|| ..+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhh
Confidence 998886654422 122222221111 1234888887753 235678999999 467889999888777
Q ss_pred HHHHHHhh
Q 000888 1113 ILQVILAK 1120 (1237)
Q Consensus 1113 ILk~~L~~ 1120 (1237)
||...-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77776554
No 338
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.82 E-value=0.0053 Score=74.73 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=55.5
Q ss_pred CeEEEEcchhhhhcC---CcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccc
Q 000888 692 PFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 768 (1237)
Q Consensus 692 p~ILfi~di~~~~~~---~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~ 768 (1237)
+-+|+||||+.+.+. +.++++.|....+. |..+||+++..+.. +.
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~------------------------------l~ 259 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPPKE------------------------------LP 259 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHH------------------------------HH
Confidence 458999999986542 34677777666654 56677877664431 01
Q ss_pred cccccCCCchHHHHHHhhhCC--CeEEEeCCCHHHHHHHHHHhhhh
Q 000888 769 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 812 (1237)
Q Consensus 769 r~~~~~~~~~~~d~~L~rrF~--~~IeI~LPdeE~RL~IwK~qL~~ 812 (1237)
.+++.|.-||. ..++|..|+.+.|..|++.....
T Consensus 260 ----------~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 260 ----------GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ----------HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 14566777785 47999999999999999976643
No 339
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.023 Score=68.29 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 1005 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL----g~~fi~Id~se 1005 (1237)
.-++|.||+|+|||+++..+|..+ |..+..+++..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 468999999999999999998754 44455555433
No 340
>PRK14974 cell division protein FtsY; Provisional
Probab=96.80 E-value=0.025 Score=66.37 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1003 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~ 1003 (1237)
+.-++|.|++|+|||+++..+|..+ +..+..+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4679999999999999999888776 555555544
No 341
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.78 E-value=0.0018 Score=79.67 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.5
Q ss_pred cchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 000888 933 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1003 (1237)
Q Consensus 933 tf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-g~~fi~Id~ 1003 (1237)
-|+|+.|++++++.+.+.+..... ++..+..-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 477899999999999888732111 112233579999999999999999999988 456666644
No 342
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.77 E-value=0.012 Score=66.71 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccc
Q 000888 465 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 503 (1237)
Q Consensus 465 ~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d~~~ 503 (1237)
+++.|||.|||| ..+++||++||+.+|.+++.+..+.
T Consensus 20 ~g~~vLL~G~~G--tGKT~lA~~la~~lg~~~~~i~~~~ 56 (262)
T TIGR02640 20 SGYPVHLRGPAG--TGKTTLAMHVARKRDRPVMLINGDA 56 (262)
T ss_pred cCCeEEEEcCCC--CCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 457899999999 8999999999999999999986543
No 343
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.76 E-value=0.0014 Score=68.12 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
+..|+|+|+||+|||++|+++|+.++++++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 368999999999999999999999999888654
No 344
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.73 E-value=0.0018 Score=69.83 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=55.9
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEeccccccccccc----cHH-------------HHHHHHHHHHhcCCc
Q 000888 973 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 1031 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAI-A~eL---g~~fi~Id~seL~s~~~G~----se~-------------~I~~lF~~A~k~~Ps 1031 (1237)
.|++|.||+|||+.|-.. +... |.+++. +...|.-..+.. ... ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999977555 4433 666555 433221111111 000 001111111111468
Q ss_pred EEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCC
Q 000888 1032 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVN 1103 (1237)
Q Consensus 1032 ILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~ 1103 (1237)
||+|||+..+++.+.... ......+ ++ +... ....+-||.+|..+..+|..+++..+..+++.
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~---l~~h---Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EF---LAQH---RHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HG---GGGC---CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HH---HHHh---CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 999999999998876521 1112222 22 2222 12456777889999999999988665555443
No 345
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.72 E-value=0.0068 Score=66.54 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~s 1004 (1237)
+..-++|+|+||+|||++|..+|.+. +..++.++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33568999999999999999998755 7788888876
No 346
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.71 E-value=0.0085 Score=69.79 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=51.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----------------cccccccHHHHHHHHHHHHhcC
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------------SKWFGEGEKYVKAVFSLASKIA 1029 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~----------------s~~~G~se~~I~~lF~~A~k~~ 1029 (1237)
+..-++|+||||+|||+||..++.+. +..++.++..... -......+..+..+....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~ 133 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGA 133 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccC
Confidence 33568999999999999988876554 6777777764321 1111223444444444556667
Q ss_pred CcEEEEccchhhhcC
Q 000888 1030 PSVIFVDEVDSMLGR 1044 (1237)
Q Consensus 1030 PsILfIDEID~L~~~ 1044 (1237)
+.+|+||-+..|...
T Consensus 134 ~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 134 VDIIVVDSVAALVPK 148 (321)
T ss_pred CcEEEEcchhhhccc
Confidence 899999999998754
No 347
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.71 E-value=0.012 Score=65.53 Aligned_cols=73 Identities=26% Similarity=0.381 Sum_probs=47.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cc-----------------------c--ccH
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WF-----------------------G--EGE 1015 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~------~~-----------------------G--~se 1015 (1237)
..-++|.|++|||||+++..++..+ +...++++..+-... .+ + ..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 3579999999999999986665544 566666664321000 00 0 013
Q ss_pred HHHHHHHHHHHhcCCcEEEEccchhhh
Q 000888 1016 KYVKAVFSLASKIAPSVIFVDEVDSML 1042 (1237)
Q Consensus 1016 ~~I~~lF~~A~k~~PsILfIDEID~L~ 1042 (1237)
..+..+...+....|.+++|||+-.+.
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 344555566556678999999998775
No 348
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.69 E-value=0.025 Score=74.20 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=82.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc---c------------cc---------------ccHHHHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---W------------FG---------------EGEKYVKA 1020 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~---~------------~G---------------~se~~I~~ 1020 (1237)
+-++|+||+|.|||+++...++..+ ++..++...-... + .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4699999999999999999888776 6665554211000 0 00 00112233
Q ss_pred HHHHHHh-cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhcccc
Q 000888 1021 VFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 1099 (1237)
Q Consensus 1021 lF~~A~k-~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~ 1099 (1237)
++..... ..|.+|+|||++.+- . ......+..|+ +.. ..++.+|.++.....+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~---~~~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFL---RHQ----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHH---HhC----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333332 568899999999661 1 12223333333 222 123333335543222321111111223
Q ss_pred ccCC----CCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcH
Q 000888 1100 LMVN----LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1100 I~v~----~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySg 1141 (1237)
+.+. ..+.++-.+++...+.. . .+..++..|.+.|+|...
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~-~-~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSS-P-IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCC-C-CCHHHHHHHHHHhCChHH
Confidence 4444 66888888888765432 1 245567888888888654
No 349
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.68 E-value=0.053 Score=70.38 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 000888 465 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 500 (1237)
Q Consensus 465 ~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d 500 (1237)
..+.|+|.||+| ..+.+|+|++|+.++-++.-++
T Consensus 348 ~g~~i~l~GppG--~GKTtl~~~ia~~l~~~~~~i~ 381 (784)
T PRK10787 348 KGPILCLVGPPG--VGKTSLGQSIAKATGRKYVRMA 381 (784)
T ss_pred CCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEE
Confidence 346799999999 8899999999999999988776
No 350
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.68 E-value=0.0048 Score=81.02 Aligned_cols=133 Identities=19% Similarity=0.232 Sum_probs=87.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------ccccccccHH---HHHHHHHHHHhcCCcEEEEccchhhh
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKWFGEGEK---YVKAVFSLASKIAPSVIFVDEVDSML 1042 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL------~s~~~G~se~---~I~~lF~~A~k~~PsILfIDEID~L~ 1042 (1237)
.+||.||+.+|||+....+|++.|..|++++-.+. ++.|+..... .-..++..|-+.. --|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 49999999999999999999999999999986543 3333322211 1122344444433 46889998632
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhcCC-----cc-----cCCccEEEEEecCCCC------CCcHHHHhhccccccCCCCC
Q 000888 1043 GRRENPGEHEAMRKMKNEFMVNWDGL-----RT-----KDTERILVLAATNRPF------DLDEAVIRRLPRRLMVNLPD 1106 (1237)
Q Consensus 1043 ~~r~~~~~~~a~~~il~eLL~~ldgl-----~~-----~~~~~VlVIaTTN~p~------~Ld~aLlrRFd~~I~v~~Pd 1106 (1237)
+ ..++..|-.++|.- +. .+...++++||-|.|- .|..++++|| ..++|..-.
T Consensus 968 p-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddip 1035 (4600)
T COG5271 968 P-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIP 1035 (4600)
T ss_pred c-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCc
Confidence 1 22333333333321 11 1345788888889874 5778999999 678887777
Q ss_pred HHHHHHHHHHHH
Q 000888 1107 APNRAKILQVIL 1118 (1237)
Q Consensus 1107 ~eeR~eILk~~L 1118 (1237)
.++...||+..+
T Consensus 1036 edEle~ILh~rc 1047 (4600)
T COG5271 1036 EDELEEILHGRC 1047 (4600)
T ss_pred HHHHHHHHhccC
Confidence 788888887654
No 351
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.68 E-value=0.0018 Score=72.67 Aligned_cols=67 Identities=30% Similarity=0.592 Sum_probs=47.7
Q ss_pred eEEEEcCCCChHHHHHHHHH------HHhCCcEEEEeccccccc-----cccccHHHHHHHHHHH--------HhcCCcE
Q 000888 972 GILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLA--------SKIAPSV 1032 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA------~eLg~~fi~Id~seL~s~-----~~G~se~~I~~lF~~A--------~k~~PsI 1032 (1237)
.+||.||+|.||+.||+.|- +.+..+|+.++|..+.+. .+|. ++..|.-| +.....+
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh----vkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH----VKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh----hccccccchhhhhhhhccCCCce
Confidence 49999999999999999984 455789999999988543 2222 22223222 1223479
Q ss_pred EEEccchhhh
Q 000888 1033 IFVDEVDSML 1042 (1237)
Q Consensus 1033 LfIDEID~L~ 1042 (1237)
||+|||..|.
T Consensus 286 lfldeigelg 295 (531)
T COG4650 286 LFLDEIGELG 295 (531)
T ss_pred EehHhhhhcC
Confidence 9999999883
No 352
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.63 E-value=0.0074 Score=68.54 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=61.3
Q ss_pred ccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-ccccc
Q 000888 932 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSIT 1007 (1237)
Q Consensus 932 vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~~fi~Id-~seL~ 1007 (1237)
.++++++-.+...+.|++++.. +...++|.||+|+|||++++++...+. ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677887777777777766642 223599999999999999999987773 3355542 22221
Q ss_pred cc-----ccc-ccHHHHHHHHHHHHhcCCcEEEEccch
Q 000888 1008 SK-----WFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1237)
Q Consensus 1008 s~-----~~G-~se~~I~~lF~~A~k~~PsILfIDEID 1039 (1237)
-. .+. ........+...+-+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 11 011 111234566677778899999999995
No 353
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.59 E-value=0.0076 Score=61.01 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=40.9
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINI 1001 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~I 1001 (1237)
.+.|+.-+.+.+...+...+.. ....+| .-+-|+|++|||||++++.||+.+ +.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~------~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~ 89 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLAN------PNPRKP-LVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQ 89 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcC------CCCCCC-EEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceee
Confidence 4567777777777666543332 122333 567799999999999999999986 4455554
No 354
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.56 E-value=0.011 Score=68.82 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=50.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----------------ccccccccHHHHHHHHHHHHhcCCc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 1031 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL----------------~s~~~G~se~~I~~lF~~A~k~~Ps 1031 (1237)
+-++++||||+|||+||-.++.+. +..++.++...- .-......+..+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 568999999999999999887544 677887776431 1111122333444444445566789
Q ss_pred EEEEccchhhhcC
Q 000888 1032 VIFVDEVDSMLGR 1044 (1237)
Q Consensus 1032 ILfIDEID~L~~~ 1044 (1237)
+|+||-+-.|.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999999753
No 355
>PRK13695 putative NTPase; Provisional
Probab=96.55 E-value=0.011 Score=62.50 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988775
No 356
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.55 E-value=0.0042 Score=62.67 Aligned_cols=32 Identities=50% Similarity=0.814 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1006 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL 1006 (1237)
|++.||||+|||++|+.++..++ ...++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHH
Confidence 78999999999999999999999 444554444
No 357
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.014 Score=64.28 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=47.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEec-cccccccccccHH-------------HHHHHHHHHHhc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISM-SSITSKWFGEGEK-------------YVKAVFSLASKI 1028 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL--g------~~fi~Id~-seL~s~~~G~se~-------------~I~~lF~~A~k~ 1028 (1237)
.+.||.||||+|||+|.+-||+-+ + ..+.-++- +++.+...|.+.. .-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999877 2 23444443 3443333333221 123355666788
Q ss_pred CCcEEEEccchhh
Q 000888 1029 APSVIFVDEVDSM 1041 (1237)
Q Consensus 1029 ~PsILfIDEID~L 1041 (1237)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999744
No 358
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.48 E-value=0.0053 Score=66.57 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=43.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEec-ccccc---------ccccccHHHHHHHHHHHHhcCCcEEEEcc
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGA----NFINISM-SSITS---------KWFGEGEKYVKAVFSLASKIAPSVIFVDE 1037 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~----~fi~Id~-seL~s---------~~~G~se~~I~~lF~~A~k~~PsILfIDE 1037 (1237)
-++|.||+|+|||+++++++..+.. .++.+.. .++.. ...+.........+..+-+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4899999999999999999888742 2333321 12210 01122222344556666677899999999
Q ss_pred c
Q 000888 1038 V 1038 (1237)
Q Consensus 1038 I 1038 (1237)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 359
>PRK13947 shikimate kinase; Provisional
Probab=96.48 E-value=0.0026 Score=66.53 Aligned_cols=32 Identities=47% Similarity=0.616 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
.+|+|.|+||+|||++|+.+|+.++.+|+..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999997765
No 360
>PRK10867 signal recognition particle protein; Provisional
Probab=96.48 E-value=0.12 Score=62.72 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc----------------c---c-cccHHHHHHHHHH
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK----------------W---F-GEGEKYVKAVFSL 1024 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~~fi~Id~seL~s~----------------~---~-G~se~~I~~lF~~ 1024 (1237)
++.-++++|++|+|||+++..+|..+ |..+..+++..+... + . ..+..........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45789999999999999888887755 556666665432110 0 0 1223344456666
Q ss_pred HHhcCCcEEEEccchhh
Q 000888 1025 ASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 1025 A~k~~PsILfIDEID~L 1041 (1237)
++.....+|+||=.-.+
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66667789999977644
No 361
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.47 E-value=0.018 Score=61.29 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=46.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHH--------------------HHHHHHHHHHhcCCc
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 1031 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~--------------------~I~~lF~~A~k~~Ps 1031 (1237)
.+|+.|+||+|||++|..++..++.+++++........ +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999998877777665442111 1111 123332221 23456
Q ss_pred EEEEccchhhhcC
Q 000888 1032 VIFVDEVDSMLGR 1044 (1237)
Q Consensus 1032 ILfIDEID~L~~~ 1044 (1237)
+++||-+..|...
T Consensus 79 ~VlID~Lt~~~~n 91 (170)
T PRK05800 79 CVLVDCLTTWVTN 91 (170)
T ss_pred EEEehhHHHHHHH
Confidence 8999999988643
No 362
>PRK04296 thymidine kinase; Provisional
Probab=96.44 E-value=0.02 Score=61.74 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=40.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec--c--c----ccccccccc-H----HHHHHHHHHH--HhcCCcEE
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA---GANFINISM--S--S----ITSKWFGEG-E----KYVKAVFSLA--SKIAPSVI 1033 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~--s--e----L~s~~~G~s-e----~~I~~lF~~A--~k~~PsIL 1033 (1237)
-+|++||+|+|||+++..++..+ +..++.+.. . . +.+ ..|.. + .....++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVS-RIGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEec-CCCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999988888776 555555532 1 1 111 11110 0 1122333333 23456899
Q ss_pred EEccchhh
Q 000888 1034 FVDEVDSM 1041 (1237)
Q Consensus 1034 fIDEID~L 1041 (1237)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999755
No 363
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.44 E-value=0.0035 Score=74.86 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=63.1
Q ss_pred CCccccccccccccccc-hhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEE
Q 000888 419 DGTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 497 (1237)
Q Consensus 419 ~~~~~~vsf~~fpYyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll 497 (1237)
.|++|.-.++.| ++. ++.|.+|.-|+|.|.+...+.+-.++ ....+.|||.||+| ..+.+|||+||+.++++++
T Consensus 2 tP~~I~~~Ld~~--IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi 76 (441)
T TIGR00390 2 TPREIVAELDKY--IIGQDNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTG--VGKTEIARRLAKLANAPFI 76 (441)
T ss_pred CHHHHHHHHhhh--ccCHHHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCC--CCHHHHHHHHHHHhCCeEE
Confidence 345555555653 444 89999999999999776554332222 22347899999999 9999999999999999999
Q ss_pred EEeccccC
Q 000888 498 IFDSHSLL 505 (1237)
Q Consensus 498 ~~d~~~~~ 505 (1237)
-+|.+.+.
T Consensus 77 ~vdat~~~ 84 (441)
T TIGR00390 77 KVEATKFT 84 (441)
T ss_pred Eeecceee
Confidence 99998885
No 364
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.41 E-value=0.0083 Score=62.80 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=35.4
Q ss_pred ccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 000888 937 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 1006 (1237)
Q Consensus 937 I~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~---fi~Id~seL 1006 (1237)
++|-++..+.|...+.. .. ...++.++|+|++|+|||+|++++...+... ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 35666777777766631 11 2233689999999999999999998877332 777776554
No 365
>PRK03839 putative kinase; Provisional
Probab=96.41 E-value=0.0029 Score=67.04 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
.|+|.|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987755
No 366
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.40 E-value=0.0064 Score=69.30 Aligned_cols=69 Identities=28% Similarity=0.380 Sum_probs=43.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-ccccccccccc-------------cHHHHHHHHHHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSKWFGE-------------GEKYVKAVFSLAS 1026 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~----------~fi~Id-~seL~s~~~G~-------------se~~I~~lF~~A~ 1026 (1237)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++...+.+- .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988732 222222 11221111000 0112334666677
Q ss_pred hcCCcEEEEccch
Q 000888 1027 KIAPSVIFVDEVD 1039 (1237)
Q Consensus 1027 k~~PsILfIDEID 1039 (1237)
...|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 367
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.39 E-value=0.0095 Score=64.60 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=50.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----cccccHHHHHHHHHHHH---------hcCCcEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFGEGEKYVKAVFSLAS---------KIAPSVIF 1034 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~----~~G~se~~I~~lF~~A~---------k~~PsILf 1034 (1237)
+-++|.||||||||+++++++..+ +..++.+.+..-... ..+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 358899999999999999987666 666666654321100 00000011111111110 12347999
Q ss_pred EccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC
Q 000888 1035 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1084 (1237)
Q Consensus 1035 IDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1084 (1237)
|||+..+- ...+..++..... .+.++++++-.+.
T Consensus 99 VDEasmv~------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccC------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 99998662 2334444444333 2467888887775
No 368
>PRK10536 hypothetical protein; Provisional
Probab=96.38 E-value=0.019 Score=64.90 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 000888 972 GILLFGPPGTGKTMLAKAVATE 993 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~e 993 (1237)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999985
No 369
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.36 E-value=0.018 Score=62.85 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~s 1004 (1237)
.-++|+|+||+|||+++..+|.+. +.+++.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 569999999999999999998776 5677777654
No 370
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.36 E-value=0.024 Score=66.39 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=86.0
Q ss_pred hccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-------
Q 000888 936 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 1008 (1237)
Q Consensus 936 dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s------- 1008 (1237)
.+.+-+.....|..++.. .. ..-|..|.|+|..|||||++.+++.+.++.+.+.+++-+.+.
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 344556666777766642 11 122356799999999999999999999999999988754311
Q ss_pred ---c-----ccccc----HHHHHH---HHH---HHHhc-CCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCc
Q 000888 1009 ---K-----WFGEG----EKYVKA---VFS---LASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1069 (1237)
Q Consensus 1009 ---~-----~~G~s----e~~I~~---lF~---~A~k~-~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~ 1069 (1237)
+ ..|.. ...+.. +|. .+.+. +.-.|++|++|.+-. ....+++.++.+-.-+.
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD---------~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD---------MDAILLQCLFRLYELLN 146 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc---------cchHHHHHHHHHHHHhC
Confidence 1 11111 111211 222 22222 345788999999831 11234444443332221
Q ss_pred ccCCccEEEEEecCCCCCCcHHHHhh---c-cccccCCCCCHHHHHHHHHHH
Q 000888 1070 TKDTERILVLAATNRPFDLDEAVIRR---L-PRRLMVNLPDAPNRAKILQVI 1117 (1237)
Q Consensus 1070 ~~~~~~VlVIaTTN~p~~Ld~aLlrR---F-d~~I~v~~Pd~eeR~eILk~~ 1117 (1237)
.+.++|.....+. ..-...+ + -..++||.|+.++..+|+..-
T Consensus 147 ----~~~i~iils~~~~--e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 147 ----EPTIVIILSAPSC--EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ----CCceEEEEecccc--HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2223333222111 1111111 1 245888999999999888653
No 371
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.33 E-value=0.041 Score=66.16 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=75.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchh
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 1051 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~ 1051 (1237)
-++|+||.++|||++++.+.+.+.-.++.++..++......- ...-..+..+.......||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988888885556666655543322111 112223333333345799999998761
Q ss_pred HHHHHHHHHHHHHhcCCcccCCccEEEEEecCCC--CCCcHHHHhhccccccCCCCCHHHHHH-------------HHHH
Q 000888 1052 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP--FDLDEAVIRRLPRRLMVNLPDAPNRAK-------------ILQV 1116 (1237)
Q Consensus 1052 ~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p--~~Ld~aLlrRFd~~I~v~~Pd~eeR~e-------------ILk~ 1116 (1237)
...+.+..+ .|.. +.++++.+++... ..+.+.+..|. ..+.+-+.+..+... .++.
T Consensus 108 -~W~~~lk~l---~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~ 178 (398)
T COG1373 108 -DWERALKYL---YDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFEK 178 (398)
T ss_pred -hHHHHHHHH---Hccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHHH
Confidence 112222222 2322 1134554444332 23334555575 567777778777754 4666
Q ss_pred HHhhCCCC
Q 000888 1117 ILAKEDLS 1124 (1237)
Q Consensus 1117 ~L~~~~l~ 1124 (1237)
++..-++.
T Consensus 179 Yl~~GGfP 186 (398)
T COG1373 179 YLETGGFP 186 (398)
T ss_pred HHHhCCCc
Confidence 66554443
No 372
>PHA02624 large T antigen; Provisional
Probab=96.32 E-value=0.019 Score=71.28 Aligned_cols=120 Identities=19% Similarity=0.259 Sum_probs=64.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCch
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 1050 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~ 1050 (1237)
+.+||+||||||||+++++|++.++...+.++++.-.+ -|...-...-.+.+||++-.-.-.......
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhhhhhhceEEEeeeccccccccccCCc
Confidence 57999999999999999999999977777787554211 122221222257778877422110000000
Q ss_pred hHHHHHHHHHHHHHhcCC-cc----cCCccE-----EEEEecCCCCCCcHHHHhhccccccCCC
Q 000888 1051 HEAMRKMKNEFMVNWDGL-RT----KDTERI-----LVLAATNRPFDLDEAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1051 ~~a~~~il~eLL~~ldgl-~~----~~~~~V-----lVIaTTN~p~~Ld~aLlrRFd~~I~v~~ 1104 (1237)
...+.. +.-|-..+||- .- +...++ -+|.|||. ..|+..+.-||..++.|..
T Consensus 500 G~~~dN-l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQGMNN-LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccccch-hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000000 01122334443 00 000011 22446664 6788888889988888854
No 373
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.025 Score=67.65 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=61.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccccc----------cc------cccccHHHHHHHHHHHH
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSIT----------SK------WFGEGEKYVKAVFSLAS 1026 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL-------g~~fi~Id~seL~----------s~------~~G~se~~I~~lF~~A~ 1026 (1237)
+..++|+||+|+|||+++..+|..+ +..+..+++..+. .. ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3679999999999999999998765 2334333332220 00 1111122233333332
Q ss_pred hcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhc
Q 000888 1027 KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRL 1096 (1237)
Q Consensus 1027 k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRF 1096 (1237)
....+|+||.+.... ..... +.++...++.... +...++|+.+|.....+.. +.++|
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~-~~~~~ 309 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKE-IFHQF 309 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHH-HHHHh
Confidence 346799999998652 11111 2333333333321 2256788888777666664 33444
No 374
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.30 E-value=0.015 Score=68.29 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 000888 967 TKPCKGILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 967 ~kP~~gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
..+++|+.|||.-|||||+|.-..-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 5668999999999999999988776444
No 375
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.29 E-value=0.0037 Score=63.89 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988655
No 376
>PRK00625 shikimate kinase; Provisional
Probab=96.28 E-value=0.0039 Score=66.50 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
.|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5999999999999999999999999998876
No 377
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.24 E-value=0.024 Score=69.16 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=52.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cccc--------cHHHHHHHHHHHHhcCC
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAP 1030 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~------~~G~--------se~~I~~lF~~A~k~~P 1030 (1237)
.+..-+||.|+||+|||+|+..+|..+ +.++++++..+-... -+|. .+..+..+...+.+..|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 343569999999999999999998765 457777776432111 0111 11224455666677789
Q ss_pred cEEEEccchhhhc
Q 000888 1031 SVIFVDEVDSMLG 1043 (1237)
Q Consensus 1031 sILfIDEID~L~~ 1043 (1237)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998864
No 378
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.22 E-value=0.015 Score=56.49 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
+++++||+|+|||+++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888887666
No 379
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.20 E-value=0.01 Score=70.41 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=44.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEeccc---------------cccccccccHHHHH---HHHHHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGA-----N-FINISMSS---------------ITSKWFGEGEKYVK---AVFSLAS 1026 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~-----~-fi~Id~se---------------L~s~~~G~se~~I~---~lF~~A~ 1026 (1237)
...||+||||+|||+|++.|++.... . ++.+.... +.+.+-..++..++ .+++.|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999987732 2 22222111 22222223333333 3344443
Q ss_pred h----cCCcEEEEccchhhh
Q 000888 1027 K----IAPSVIFVDEVDSML 1042 (1237)
Q Consensus 1027 k----~~PsILfIDEID~L~ 1042 (1237)
. ....+||||||.++.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 3 245799999999986
No 380
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.20 E-value=0.039 Score=64.38 Aligned_cols=101 Identities=16% Similarity=0.306 Sum_probs=57.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecccccc-------ccccccHHHHHHHHHHHHhcCCcEEEEccc
Q 000888 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITS-------KWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1038 (1237)
Q Consensus 967 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~f-i~Id~seL~s-------~~~G~se~~I~~lF~~A~k~~PsILfIDEI 1038 (1237)
..+++|+.|+|+-|.|||+|.-..-+.+..+- .++....++. ...|.+ ..+..+-.... ....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeee
Confidence 34679999999999999999998888774432 2222111111 111222 11111111111 12369999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCC
Q 000888 1039 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 1084 (1237)
Q Consensus 1039 D~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~ 1084 (1237)
+.- ...+--.+.+++++|+ ...|.+|+|+|.
T Consensus 140 ~Vt-----DI~DAMiL~rL~~~Lf----------~~GV~lvaTSN~ 170 (367)
T COG1485 140 EVT-----DIADAMILGRLLEALF----------ARGVVLVATSNT 170 (367)
T ss_pred eec-----ChHHHHHHHHHHHHHH----------HCCcEEEEeCCC
Confidence 732 2223334455555553 246899999996
No 381
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.19 E-value=0.026 Score=61.40 Aligned_cols=69 Identities=25% Similarity=0.401 Sum_probs=41.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEE-------------EEeccccccc---cccccHHHHHHHHHHHHhcC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFI-------------NISMSSITSK---WFGEGEKYVKAVFSLASKIA 1029 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi-------------~Id~seL~s~---~~G~se~~I~~lF~~A~k~~ 1029 (1237)
.-++|.||.|+|||+|.+.|+... |.++- .+...+-+.. .+......+..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 468999999999999999998533 44321 1111110000 00111133555666665557
Q ss_pred CcEEEEccch
Q 000888 1030 PSVIFVDEVD 1039 (1237)
Q Consensus 1030 PsILfIDEID 1039 (1237)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 9999999974
No 382
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.18 E-value=0.25 Score=60.00 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=47.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc----------------c---cc-ccHHHHHHHHHH
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK----------------W---FG-EGEKYVKAVFSL 1024 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~~fi~Id~seL~s~----------------~---~G-~se~~I~~lF~~ 1024 (1237)
++.-+++.|++|+|||+++..+|..+ |..+..+++..+... + .+ .+.......+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 34789999999999999988888764 566666666433110 0 00 112333455666
Q ss_pred HHhcCCcEEEEccchhh
Q 000888 1025 ASKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 1025 A~k~~PsILfIDEID~L 1041 (1237)
+......+|+||=...+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 66666789999976544
No 383
>PRK06217 hypothetical protein; Validated
Probab=96.16 E-value=0.005 Score=65.68 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
..|+|.|++|+|||++|++|++.++++++.++
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 36999999999999999999999999887765
No 384
>PHA02774 E1; Provisional
Probab=96.16 E-value=0.064 Score=66.49 Aligned_cols=32 Identities=25% Similarity=0.612 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Ee
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFIN-IS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~-Id 1002 (1237)
+.++|+||||||||++|.+|++.++..++. ++
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 589999999999999999999999655544 44
No 385
>PRK14532 adenylate kinase; Provisional
Probab=96.14 E-value=0.0047 Score=65.85 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.|+|.||||+|||++|+.||+.+++.++ ++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 5899999999999999999999987665 4444433
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.015 Score=69.18 Aligned_cols=108 Identities=22% Similarity=0.323 Sum_probs=58.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccccc----------ccccccc------HHHHHHHHHHHHhcC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSSIT----------SKWFGEG------EKYVKAVFSLASKIA 1029 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL----g-~~fi~Id~seL~----------s~~~G~s------e~~I~~lF~~A~k~~ 1029 (1237)
..++|.||+|+|||+++..||..+ | ..+..+....+. ....|-. ...+...+ .+...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHhcC
Confidence 579999999999999999999764 3 234444433321 0011110 11112222 22234
Q ss_pred CcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHH
Q 000888 1030 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAV 1092 (1237)
Q Consensus 1030 PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aL 1092 (1237)
..+|+||.....- . ...+.+.+..+..... ....++||.+|+..+.+...+
T Consensus 216 ~DlVLIDTaG~~~------~-----d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 216 KHMVLIDTIGMSQ------R-----DRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCEEEEcCCCCCc------c-----cHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 5899999986331 0 1122233333433221 235688888888777766543
No 387
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.13 E-value=0.042 Score=60.40 Aligned_cols=94 Identities=19% Similarity=0.347 Sum_probs=57.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccc-----------------------------ccc----c
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT-----------------------------SKW----F 1011 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~~fi~Id~seL~-----------------------------s~~----~ 1011 (1237)
+...+|+.||||+|||.++..++... |-+++.++..+-. ... .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 33679999999999999999876433 7777777653210 000 1
Q ss_pred cccHHHHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhc
Q 000888 1012 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1066 (1237)
Q Consensus 1012 G~se~~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ld 1066 (1237)
...+..+..+...+....+.+++||.+..+.... . ....+..+..+...+.
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~-~---~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLYD-D---PEELRRFLRALIKFLK 148 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS-S---GGGHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC-C---HHHHHHHHHHHHHHHH
Confidence 1223445666666677788999999999983222 2 1223445555555543
No 388
>PRK13949 shikimate kinase; Provisional
Probab=96.13 E-value=0.0049 Score=65.32 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
+.|+|.|+||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46999999999999999999999999988876
No 389
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.11 E-value=0.031 Score=68.02 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=53.6
Q ss_pred CCeEEEEcchhhhhcC---CcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCcc
Q 000888 691 CPFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSF 767 (1237)
Q Consensus 691 ~p~ILfi~di~~~~~~---~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~ 767 (1237)
++-+|+|||++.+.+. +.++++.|....+. |..+||++...+.. +
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd~~p~~------------------------------l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQK------------------------------L 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECCCCHHH------------------------------H
Confidence 4669999999987653 35677777666654 56677776543321 1
Q ss_pred ccccccCCCchHHHHHHhhhC--CCeEEEeCCCHHHHHHHHHHhhh
Q 000888 768 GRLHDRGKEIPKATKLLTKLF--PNKVTIHMPQDEALLASWKHQLD 811 (1237)
Q Consensus 768 ~r~~~~~~~~~~~d~~L~rrF--~~~IeI~LPdeE~RL~IwK~qL~ 811 (1237)
. .+...|..|| +..+.|.+|+.+.|..|+++...
T Consensus 242 ~----------~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 242 S----------EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred H----------HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 1 1344566566 34788999999999999986654
No 390
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.10 E-value=0.06 Score=59.98 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1003 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~ 1003 (1237)
.+...+|++||||+|||++|..++.+. |-+.+.++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 344679999999999999998876543 556666654
No 391
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.09 E-value=0.044 Score=60.66 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--------------cc-------------------cc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KW-------------------FG 1012 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s--------------~~-------------------~G 1012 (1237)
+...++++|+||+|||+++.+++.+. +..++.++..+-.. .+ ..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 33679999999999999999997653 66666666532110 00 00
Q ss_pred ccHHHHHHHHHHHHhcCCcEEEEccchhhh
Q 000888 1013 EGEKYVKAVFSLASKIAPSVIFVDEVDSML 1042 (1237)
Q Consensus 1013 ~se~~I~~lF~~A~k~~PsILfIDEID~L~ 1042 (1237)
..+..+..+........+.+|+||++..+.
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 012333444445555688999999998764
No 392
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.091 Score=58.85 Aligned_cols=146 Identities=10% Similarity=0.052 Sum_probs=94.9
Q ss_pred ceEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEecccccccc-ccccHHHHHHHHHHHHh----cCCcEEEE
Q 000888 971 KGILLFGPPG-TGKTMLAKAVATEAGA---------NFINISMSSITSKW-FGEGEKYVKAVFSLASK----IAPSVIFV 1035 (1237)
Q Consensus 971 ~gVLL~GPPG-TGKT~LAkAIA~eLg~---------~fi~Id~seL~s~~-~G~se~~I~~lF~~A~k----~~PsILfI 1035 (1237)
...||.|..+ +||..++..+++.+-. .++.+....-..+. -.-.-..++.+-..+.. ....|++|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 5799999998 9999999988887732 23333221100000 00123445555554433 34569999
Q ss_pred ccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCCCCHHHHHHHHH
Q 000888 1036 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQ 1115 (1237)
Q Consensus 1036 DEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~Pd~eeR~eILk 1115 (1237)
+++|.|- ....|.||..++. ++.++++|..|..+..+.+.+++|+ ..+.++.|....-.++..
T Consensus 96 ~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~~ 158 (263)
T PRK06581 96 YSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELYS 158 (263)
T ss_pred echHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHHH
Confidence 9999883 3455667776665 3467788888888999999999999 788899998877777776
Q ss_pred HHHhhCCCCChhhHHHHHHH
Q 000888 1116 VILAKEDLSPDVDFDAIANM 1135 (1237)
Q Consensus 1116 ~~L~~~~l~~d~dl~~LA~~ 1135 (1237)
..+... .....++-|.+.
T Consensus 159 ~~~~p~--~~~~~l~~i~~~ 176 (263)
T PRK06581 159 QFIQPI--ADNKTLDFINRF 176 (263)
T ss_pred Hhcccc--cccHHHHHHHHH
Confidence 665432 223334444444
No 393
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.06 E-value=0.0052 Score=64.99 Aligned_cols=33 Identities=21% Similarity=0.508 Sum_probs=27.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~ 1007 (1237)
|+|+||||+|||++|+.||+.+++. .+++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHH
Confidence 7899999999999999999999864 45555554
No 394
>PRK04195 replication factor C large subunit; Provisional
Probab=96.04 E-value=0.063 Score=66.06 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=31.8
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccc
Q 000888 466 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 503 (1237)
Q Consensus 466 ~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d~~~ 503 (1237)
.+.+||+||+| +.+.+||+|||++++..++.++.++
T Consensus 39 ~~~lLL~GppG--~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 39 KKALLLYGPPG--VGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEEcccc
Confidence 56899999999 8999999999999998887777654
No 395
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.02 E-value=0.042 Score=59.76 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=40.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc--------------ccc-----ccc-ccHHHHHHHHHHHHh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI--------------TSK-----WFG-EGEKYVKAVFSLASK 1027 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL--------------~s~-----~~G-~se~~I~~lF~~A~k 1027 (1237)
+-++|.||+|+|||+.+..+|..+ +..+.-+++..+ ++- ... .....+.+.++.++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 569999999999999888888766 444433333222 110 001 122334455555555
Q ss_pred cCCcEEEEccch
Q 000888 1028 IAPSVIFVDEVD 1039 (1237)
Q Consensus 1028 ~~PsILfIDEID 1039 (1237)
....+|+||-..
T Consensus 82 ~~~D~vlIDT~G 93 (196)
T PF00448_consen 82 KGYDLVLIDTAG 93 (196)
T ss_dssp TTSSEEEEEE-S
T ss_pred cCCCEEEEecCC
Confidence 556799999764
No 396
>PRK06762 hypothetical protein; Provisional
Probab=96.02 E-value=0.015 Score=60.69 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~ 1007 (1237)
.-++|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4689999999999999999999997667666654443
No 397
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.01 E-value=0.04 Score=58.62 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=46.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc-----------------cccHHHHHHHHHHHHhcCCcEEEE
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF-----------------GEGEKYVKAVFSLASKIAPSVIFV 1035 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~-----------------G~se~~I~~lF~~A~k~~PsILfI 1035 (1237)
+|+.|++|+|||++|..++...+.+++++....-.+.-. .+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 689999999999999999988877888876543221100 01112233333211 14679999
Q ss_pred ccchhhhcCC
Q 000888 1036 DEVDSMLGRR 1045 (1237)
Q Consensus 1036 DEID~L~~~r 1045 (1237)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887544
No 398
>PRK13948 shikimate kinase; Provisional
Probab=95.98 E-value=0.0072 Score=65.00 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 967 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
.+++..|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 345578999999999999999999999999998666
No 399
>PRK09354 recA recombinase A; Provisional
Probab=95.98 E-value=0.044 Score=64.60 Aligned_cols=73 Identities=26% Similarity=0.319 Sum_probs=49.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----------------ccccccccHHHHHHHHHHHHhcCCc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 1031 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL----------------~s~~~G~se~~I~~lF~~A~k~~Ps 1031 (1237)
.-++|+||+|+|||+||-.++.+. |..+++++...- +-......+..+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 568999999999999998876544 777777776441 1111112233333333444556789
Q ss_pred EEEEccchhhhc
Q 000888 1032 VIFVDEVDSMLG 1043 (1237)
Q Consensus 1032 ILfIDEID~L~~ 1043 (1237)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999999875
No 400
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.95 E-value=0.047 Score=59.73 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 1005 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g------~~fi~Id~se 1005 (1237)
+..-+.|+||||+|||+++..+|... + ..+++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33569999999999999999998664 3 5677777654
No 401
>PF13479 AAA_24: AAA domain
Probab=95.93 E-value=0.03 Score=61.44 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=38.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecccc-cccc------ccccHHHHHHHHHHH--HhcCCcEEEEccchh
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSI-TSKW------FGEGEKYVKAVFSLA--SKIAPSVIFVDEVDS 1040 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~-fi~Id~seL-~s~~------~G~se~~I~~lF~~A--~k~~PsILfIDEID~ 1040 (1237)
..+||||+||+|||++|..+ +-+ |+.+..... +..+ .-.+-..+...+..+ ......+|+||.++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 57999999999999999888 222 222222211 0000 001222334444332 344678999998887
Q ss_pred hh
Q 000888 1041 ML 1042 (1237)
Q Consensus 1041 L~ 1042 (1237)
+.
T Consensus 80 ~~ 81 (213)
T PF13479_consen 80 LE 81 (213)
T ss_pred HH
Confidence 63
No 402
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.92 E-value=0.063 Score=60.54 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1003 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~~fi~Id~ 1003 (1237)
+..-++|.|+||+|||+++.++|..+ +.+++.+++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 33568999999999999999887664 666766665
No 403
>PRK05973 replicative DNA helicase; Provisional
Probab=95.91 E-value=0.068 Score=59.94 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~s 1004 (1237)
.+..-+||.|+||+|||+++-.+|.+. |.+++.+++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 444679999999999999999887655 6666666643
No 404
>PRK04040 adenylate kinase; Provisional
Probab=95.91 E-value=0.055 Score=58.44 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA--GANFI 999 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL--g~~fi 999 (1237)
.-++|+|+||+|||++++.++..+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 579999999999999999999999 55553
No 405
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.0059 Score=63.13 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
.+||++|-||||||+++.+||..++++++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999988764
No 406
>PRK14531 adenylate kinase; Provisional
Probab=95.90 E-value=0.0079 Score=64.23 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
..|+|+||||+|||++++.||..+|++++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4699999999999999999999998776553
No 407
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.89 E-value=0.11 Score=63.05 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=47.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc--------------c-ccc----c-ccHHHHHHHHHHH
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--------------S-KWF----G-EGEKYVKAVFSLA 1025 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~--------------s-~~~----G-~se~~I~~lF~~A 1025 (1237)
++.-|+|+|++|+||||++..+|..+ |..+.-+++..+. . .++ + .+.......+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999877 6666666653321 0 001 0 1122333455556
Q ss_pred HhcCCcEEEEccchhh
Q 000888 1026 SKIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 1026 ~k~~PsILfIDEID~L 1041 (1237)
+.....+||||=...+
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556789999976533
No 408
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.88 E-value=0.015 Score=68.41 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=45.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec-cccc---------cccccccHHHHHHHHHHHHhcCCcEEEEc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISM-SSIT---------SKWFGEGEKYVKAVFSLASKIAPSVIFVD 1036 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg----~~fi~Id~-seL~---------s~~~G~se~~I~~lF~~A~k~~PsILfID 1036 (1237)
..+||.||+|+|||+++++++..+. ..++.+.- .++. ....|.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4699999999999999999998774 23444321 1221 01112212234555666777899999999
Q ss_pred cch
Q 000888 1037 EVD 1039 (1237)
Q Consensus 1037 EID 1039 (1237)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 984
No 409
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.88 E-value=0.0063 Score=64.68 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
++|+|.|++|+|||++.+++|+.|+.+|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999998876
No 410
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.87 E-value=0.074 Score=58.83 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1003 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~~fi~Id~ 1003 (1237)
+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 43569999999999999998887654 778877775
No 411
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.87 E-value=0.0074 Score=60.95 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
|+|.|+||+|||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998876
No 412
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.008 Score=64.43 Aligned_cols=33 Identities=42% Similarity=0.806 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1006 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL 1006 (1237)
.|+|.||||+||||+|+.||+.++ +..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 589999999999999999999954 455554443
No 413
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.86 E-value=0.12 Score=60.50 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=31.3
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 000888 466 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 502 (1237)
Q Consensus 466 ~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d~~ 502 (1237)
++.|||.||+| +.+.+||++||+.++.+++.+.-+
T Consensus 64 ~~~ilL~G~pG--tGKTtla~~lA~~l~~~~~rV~~~ 98 (327)
T TIGR01650 64 DRRVMVQGYHG--TGKSTHIEQIAARLNWPCVRVNLD 98 (327)
T ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHCCCeEEEEec
Confidence 46899999999 999999999999999999877643
No 414
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.85 E-value=0.031 Score=68.77 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=61.5
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 1006 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~~fi~Id~-seL 1006 (1237)
..++++++-.++..+.|+.++.. +..-+|++||+|+|||++..++..++. .+++.+.- .++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45788888778878888776642 223489999999999999998887773 44555532 222
Q ss_pred ccccccc------cHHHHHHHHHHHHhcCCcEEEEccch
Q 000888 1007 TSKWFGE------GEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1237)
Q Consensus 1007 ~s~~~G~------se~~I~~lF~~A~k~~PsILfIDEID 1039 (1237)
.-...+. ...........+-+..|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1111111 11123445566677899999999995
No 415
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.85 E-value=0.0071 Score=64.32 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=25.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998766553
No 416
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.84 E-value=0.0074 Score=61.80 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=25.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
++|+|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988766543
No 417
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.84 E-value=0.014 Score=65.84 Aligned_cols=97 Identities=22% Similarity=0.374 Sum_probs=57.8
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI 1006 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~~fi~Id-~seL 1006 (1237)
..++++++-.....+.+.+++.... +....+|+.|++|+|||+++++++..+. ..++.+. ..++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3466666655555555555554211 1125899999999999999999999883 3444443 2232
Q ss_pred ccc------cc-cccHHHHHHHHHHHHhcCCcEEEEccch
Q 000888 1007 TSK------WF-GEGEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1237)
Q Consensus 1007 ~s~------~~-G~se~~I~~lF~~A~k~~PsILfIDEID 1039 (1237)
.-. .. .........++..+-+..|.+|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 111 00 1123345667778888899999999995
No 418
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.82 E-value=0.04 Score=60.67 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1005 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---------g~~fi~Id~se 1005 (1237)
+..-+.|+||||+|||+++..++... +..+++++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 33568999999999999999998543 25777777654
No 419
>PRK08233 hypothetical protein; Provisional
Probab=95.81 E-value=0.052 Score=57.00 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg-~~fi~Id 1002 (1237)
.-|.|.|+||+||||+|+.|+..++ ..++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 4588899999999999999999985 4454444
No 420
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.80 E-value=0.031 Score=65.71 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhhccCCCeEEEEcchhhhhcCCcchhhhHHHH--HhcCC-CcEEEEEeeccCCCccccCCCCCccccccC
Q 000888 676 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR--LEKLP-DKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 752 (1237)
Q Consensus 676 ~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~~~~~~~lk~~--L~~l~-g~vvvIGst~~~d~~~~~~~~~~~~l~r~g 752 (1237)
.++.+++.+.. ...++||+|||+|.++....++...|... ....+ .+|.+|+.+|..+..
T Consensus 116 ~~~~l~~~l~~--~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~--------------- 178 (365)
T TIGR02928 116 VFRRLYKELNE--RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFR--------------- 178 (365)
T ss_pred HHHHHHHHHHh--cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchH---------------
Confidence 34445554432 35689999999999875444432222222 12333 689999999876520
Q ss_pred CcccccccccCCCccccccccCCCchHHHHHHhhhC-CCeEEEeCCCHHHHHHHHHHhhh
Q 000888 753 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 811 (1237)
Q Consensus 753 r~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF-~~~IeI~LPdeE~RL~IwK~qL~ 811 (1237)
.+ ++..+..+| +..|.+++++.++..+|++..++
T Consensus 179 ---------------~~----------l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 179 ---------------EN----------LDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ---------------hh----------cCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 00 234445556 36799999999999999997664
No 421
>PRK14530 adenylate kinase; Provisional
Probab=95.79 E-value=0.0088 Score=65.45 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
.|+|.||||+|||++|+.||+.++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999877644
No 422
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.78 E-value=0.0026 Score=70.20 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=38.1
Q ss_pred eeccCCCCCCCC-----CCCCCCCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhccCCCeEEEEcchhhhhcCC
Q 000888 633 VRFDKPIPDGVD-----LGGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN 707 (1237)
Q Consensus 633 V~Fd~~~~~~~~-----l~~~c~~~~~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~~~~ 707 (1237)
++|.+|||.||| +|+++... |. ...+-.+++ .++ |-.++.+. ...-||||||||.+=...
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~--~~-~~sg~~i~k-~~d---------l~~il~~l--~~~~ILFIDEIHRlnk~~ 117 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVN--FK-ITSGPAIEK-AGD---------LAAILTNL--KEGDILFIDEIHRLNKAQ 117 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT----EE-EEECCC--S-CHH---------HHHHHHT----TT-EEEECTCCC--HHH
T ss_pred EEEECCCccchhHHHHHHHhccCCC--eE-eccchhhhh-HHH---------HHHHHHhc--CCCcEEEEechhhccHHH
Confidence 799999999999 44555432 11 111111221 111 22233332 235599999999843333
Q ss_pred cchhhhHHHHHhcCCCcE-EEEEe
Q 000888 708 SDSYSTFKSRLEKLPDKV-IVIGS 730 (1237)
Q Consensus 708 ~~~~~~lk~~L~~l~g~v-vvIGs 730 (1237)
+| .|-+.++. |.| +|||.
T Consensus 118 qe---~LlpamEd--~~idiiiG~ 136 (233)
T PF05496_consen 118 QE---ILLPAMED--GKIDIIIGK 136 (233)
T ss_dssp HH---HHHHHHHC--SEEEEEBSS
T ss_pred HH---HHHHHhcc--CeEEEEecc
Confidence 33 35566654 555 34443
No 423
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.072 Score=63.63 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=43.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-------ccc---------ccccHHHHHHHHHHHHh-cCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------SKW---------FGEGEKYVKAVFSLASK-IAP 1030 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~-------s~~---------~G~se~~I~~lF~~A~k-~~P 1030 (1237)
+.++|.||+|+|||+++..||..+ +..+..+++..+. ..| ....+..+......+.. ...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 679999999999999999999877 4455555543221 000 01223344444444443 245
Q ss_pred cEEEEccchhh
Q 000888 1031 SVIFVDEVDSM 1041 (1237)
Q Consensus 1031 sILfIDEID~L 1041 (1237)
.+||||-..+.
T Consensus 322 DvVLIDTaGRs 332 (436)
T PRK11889 322 DYILIDTAGKN 332 (436)
T ss_pred CEEEEeCcccc
Confidence 78998876543
No 424
>PRK10436 hypothetical protein; Provisional
Probab=95.71 E-value=0.035 Score=67.84 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=62.2
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI 1006 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~~fi~Id-~seL 1006 (1237)
..++++++-.+...+.+++++.. +..-+|++||+|+|||++..++..++. .+++.+- ..++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 45788888777777777776642 224699999999999998888777763 3455443 2232
Q ss_pred cccc-----ccc-cHHHHHHHHHHHHhcCCcEEEEccch
Q 000888 1007 TSKW-----FGE-GEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1237)
Q Consensus 1007 ~s~~-----~G~-se~~I~~lF~~A~k~~PsILfIDEID 1039 (1237)
.-.. ++. ........+..+-+..|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1111 111 11234556667778899999999994
No 425
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.69 E-value=0.057 Score=71.23 Aligned_cols=137 Identities=21% Similarity=0.320 Sum_probs=82.7
Q ss_pred ceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEeccccccccccccHHHHHHHHHHHHhcC--------------CcEEEE
Q 000888 971 KGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA--------------PSVIFV 1035 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~L-AkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~--------------PsILfI 1035 (1237)
++++++||||+|||+| ..++-.++-..++.++.+.-. .++..+..+-+.....+ --|||.
T Consensus 1495 R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFc 1569 (3164)
T COG5245 1495 RSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFC 1569 (3164)
T ss_pred ceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEe
Confidence 7999999999999994 567778887888887754321 12333333322221111 138999
Q ss_pred ccchhhhcCCCC---CchhHHHHHHHHH------HHHHhcCCcccCCccEEEEEecCCCCCCc-----HHHHhhcccccc
Q 000888 1036 DEVDSMLGRREN---PGEHEAMRKMKNE------FMVNWDGLRTKDTERILVLAATNRPFDLD-----EAVIRRLPRRLM 1101 (1237)
Q Consensus 1036 DEID~L~~~r~~---~~~~~a~~~il~e------LL~~ldgl~~~~~~~VlVIaTTN~p~~Ld-----~aLlrRFd~~I~ 1101 (1237)
|||. | +.... +..--+++.++.. +-+.|-.+ .+++|.+++|.+.+.- +.++|+- ..+.
T Consensus 1570 DeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-----~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf 1641 (3164)
T COG5245 1570 DEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-----CGIILYGACNPGTDEGRVKYYERFIRKP-VFVF 1641 (3164)
T ss_pred eccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhhh-----cceEEEccCCCCCCcccCccHHHHhcCc-eEEE
Confidence 9998 4 22211 1111122232222 22223222 5789999999875433 4555542 4577
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 000888 1102 VNLPDAPNRAKILQVILAK 1120 (1237)
Q Consensus 1102 v~~Pd~eeR~eILk~~L~~ 1120 (1237)
+..|.......|.+.++..
T Consensus 1642 ~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1642 CCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred ecCcchhhHHHHHHHHHHH
Confidence 8899999999999887765
No 426
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.68 E-value=0.01 Score=66.17 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
..|+|.||||+|||++|+.+|+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999999997776554
No 427
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.66 E-value=0.074 Score=63.30 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------
Q 000888 939 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS------- 1008 (1237)
Q Consensus 939 Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s------- 1008 (1237)
+.+.+...+.+.+...+..+..+. ..+..-++|.||+|+|||+++..+|..+ +..+..+++..+..
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~----~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk 254 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD----LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ 254 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce----ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHH
Confidence 446667777776665443333221 2334679999999999999999998766 44555555433211
Q ss_pred ---------ccccccHHHHHHHHHHHHh-cCCcEEEEccchhh
Q 000888 1009 ---------KWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSM 1041 (1237)
Q Consensus 1009 ---------~~~G~se~~I~~lF~~A~k-~~PsILfIDEID~L 1041 (1237)
-+.......+......++. ....+|+||=....
T Consensus 255 ~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 255 GYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 0112223334444444432 23578898876543
No 428
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.65 E-value=0.011 Score=61.86 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
..++|.|++|+|||++++.+|+.++.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999998665
No 429
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.63 E-value=0.0087 Score=62.25 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFIN 1000 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~ 1000 (1237)
++|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866653
No 430
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.63 E-value=0.11 Score=58.76 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~s 1004 (1237)
+..-+|++|+||+|||+++..+|... |-+++.++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 33569999999999999999987643 5566666543
No 431
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.62 E-value=0.1 Score=56.98 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=37.6
Q ss_pred cccccccccccchhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhC
Q 000888 424 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 493 (1237)
Q Consensus 424 ~vsf~~fpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~ 493 (1237)
.-|||+|=+.-.+++...|...+. ....+-|||+||+| ..+..||+++|++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~lll~G~~G--~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA---------------GKGDRFLYLWGESG--SGKSHLLQAACAAAE 63 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh---------------cCCCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 467888743334556666655432 12346799999999 899999999999863
No 432
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.59 E-value=0.049 Score=66.23 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=66.5
Q ss_pred cCCCCCCCccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEE
Q 000888 924 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FIN 1000 (1237)
Q Consensus 924 ii~~~~~~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~---fi~ 1000 (1237)
+.+......++++++......+.+.+.+. +|-.=+|++||+|+|||+...++.++++.+ ++.
T Consensus 227 il~~~~~~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~T 291 (500)
T COG2804 227 ILDKDQVILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIIT 291 (500)
T ss_pred EeccccccCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEE
Confidence 33444446778899888888888888774 333458999999999999999999998544 333
Q ss_pred Ee-ccccccccccccH------HHHHHHHHHHHhcCCcEEEEccchh
Q 000888 1001 IS-MSSITSKWFGEGE------KYVKAVFSLASKIAPSVIFVDEVDS 1040 (1237)
Q Consensus 1001 Id-~seL~s~~~G~se------~~I~~lF~~A~k~~PsILfIDEID~ 1040 (1237)
+. +-++.-.-+.... -.....++..-+..|.||+|.||-.
T Consensus 292 iEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 292 IEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred eeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 32 2222111111110 1123455556678999999999953
No 433
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.58 E-value=0.01 Score=62.78 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1004 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~s 1004 (1237)
+-++|.|+||+|||++|++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4599999999999999999999998877766543
No 434
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.58 E-value=0.048 Score=61.10 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000888 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1006 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL 1006 (1237)
|+|+|+||+|||++|+++++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999988 566777765433
No 435
>PRK14528 adenylate kinase; Provisional
Probab=95.57 E-value=0.012 Score=63.17 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
+.+++.||||+|||++|+.+|+.++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999877553
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.56 E-value=0.033 Score=62.82 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGA 996 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~ 996 (1237)
..++|+||+|+|||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 57999999999999999999998743
No 437
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.53 E-value=0.11 Score=57.35 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVAT 992 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~ 992 (1237)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 438
>PRK02496 adk adenylate kinase; Provisional
Probab=95.52 E-value=0.012 Score=62.50 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
..++|.||||+|||++|+.||..++++.+.+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 3599999999999999999999998776654
No 439
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.51 E-value=0.097 Score=56.78 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVAT 992 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~ 992 (1237)
..++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5699999999999999999983
No 440
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.072 Score=58.10 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
=++|+|+||+|||++|+.+|+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 48999999999999999999999
No 441
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.48 E-value=0.025 Score=65.46 Aligned_cols=69 Identities=26% Similarity=0.382 Sum_probs=47.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEec-cccc-------cccccccHHHHHHHHHHHHhcCCcEEEEcc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISM-SSIT-------SKWFGEGEKYVKAVFSLASKIAPSVIFVDE 1037 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg-----~~fi~Id~-seL~-------s~~~G~se~~I~~lF~~A~k~~PsILfIDE 1037 (1237)
.++|+.|++|+|||+++++++..+. ..++.+.- .++. .-..+........++..+-+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5799999999999999999998862 33433321 1221 101111122466788888889999999999
Q ss_pred ch
Q 000888 1038 VD 1039 (1237)
Q Consensus 1038 ID 1039 (1237)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 84
No 442
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.48 E-value=0.13 Score=56.43 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~s 1004 (1237)
+...++|.|+||+|||+++..++... +-+++.++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34679999999999999999887653 6666666653
No 443
>PRK06547 hypothetical protein; Provisional
Probab=95.48 E-value=0.014 Score=62.10 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
++.-|++.|++|+|||++|+.+++.++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467999999999999999999999988777654
No 444
>PRK13946 shikimate kinase; Provisional
Probab=95.47 E-value=0.012 Score=62.93 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998776
No 445
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.46 E-value=0.55 Score=54.76 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=67.3
Q ss_pred HHHHHHHHhc---CCcEEEEccchhhhcCCCC-----CchhHHHHHHHHHHHHHhcCCcccCCccEE-EEEecCC---CC
Q 000888 1019 KAVFSLASKI---APSVIFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDTERIL-VLAATNR---PF 1086 (1237)
Q Consensus 1019 ~~lF~~A~k~---~PsILfIDEID~L~~~r~~-----~~~~~a~~~il~eLL~~ldgl~~~~~~~Vl-VIaTTN~---p~ 1086 (1237)
..++++.... .|.++-||++..|+....- ...+...-.+...|+..+.+-..-.++.++ .+++|.. +.
T Consensus 143 ~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~ 222 (309)
T PF10236_consen 143 QALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPK 222 (309)
T ss_pred HHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccC
Confidence 3444444332 4667789999999965321 111222334555565554443332233332 2455433 22
Q ss_pred --CCcHHHHhhcc---------------------ccccCCCCCHHHHHHHHHHHHhhCCCCC----hhhHHHHHHHcCCC
Q 000888 1087 --DLDEAVIRRLP---------------------RRLMVNLPDAPNRAKILQVILAKEDLSP----DVDFDAIANMTDGY 1139 (1237)
Q Consensus 1087 --~Ld~aLlrRFd---------------------~~I~v~~Pd~eeR~eILk~~L~~~~l~~----d~dl~~LA~~T~Gy 1139 (1237)
.++.++..+-. ..|.++..+.+|-..+++.+....-+.. ..-.+.+.-.+.|
T Consensus 223 ~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G- 301 (309)
T PF10236_consen 223 SPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG- 301 (309)
T ss_pred CccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC-
Confidence 44444444221 1578889999999999999876644332 2233444444444
Q ss_pred cHHHHH
Q 000888 1140 SGSDLK 1145 (1237)
Q Consensus 1140 SgaDL~ 1145 (1237)
+++++.
T Consensus 302 Np~el~ 307 (309)
T PF10236_consen 302 NPRELE 307 (309)
T ss_pred CHHHhc
Confidence 666664
No 446
>PRK13764 ATPase; Provisional
Probab=95.43 E-value=0.027 Score=70.53 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=41.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc-----ccccccccHHHHHHHHHHHHhcCCcEEEEccch
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg---~~fi~Id-~seL-----~s~~~G~se~~I~~lF~~A~k~~PsILfIDEID 1039 (1237)
.++|++||||+|||+++++++..+. ..+..+. ..++ ...+. ............+-+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 3333332 2222 11111 000111222333346689999999985
No 447
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.43 E-value=0.029 Score=66.73 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=46.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-cccc-----------ccccccHHHHHHHHHHHHhcCCcEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SITS-----------KWFGEGEKYVKAVFSLASKIAPSVI 1033 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg-----~~fi~Id~s-eL~s-----------~~~G~se~~I~~lF~~A~k~~PsIL 1033 (1237)
..+|++||+|+|||+++++++.++. ..++.+.-+ ++.- ..+|............+-+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3689999999999999999988772 345555322 3211 1112112234556677778899999
Q ss_pred EEccch
Q 000888 1034 FVDEVD 1039 (1237)
Q Consensus 1034 fIDEID 1039 (1237)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999995
No 448
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.40 E-value=0.015 Score=61.69 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1003 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~ 1003 (1237)
..|+|.|++|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887764
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.40 E-value=0.016 Score=61.16 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1000 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~ 1000 (1237)
.-++|.||||+|||++++.+++.+|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 368999999999999999999999866544
No 450
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.38 E-value=0.28 Score=57.45 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1003 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~ 1003 (1237)
++.-++|.||+|+|||+++..+|..+ +..+.-+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34679999999999999999999877 445555544
No 451
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.37 E-value=0.084 Score=54.61 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=19.1
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 000888 971 KGILLFGPPGTGKTM-LAKAVATEA 994 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~-LAkAIA~eL 994 (1237)
..+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555554
No 452
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.36 E-value=0.014 Score=69.93 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=60.8
Q ss_pred Cccccccccccccccc-hhHHHHHHHHhhhcccCCcccccccccccCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 000888 420 GTNLQESFENFPYYLS-ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 498 (1237)
Q Consensus 420 ~~~~~vsf~~fpYyls-e~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~ 498 (1237)
|++|.-.++. |.+. +..|..|..|+|-|.+...+..-.+ -.-..+.|||.||+| ..+.+|||+||+.++++++.
T Consensus 6 p~~I~~~Ld~--~IiGQe~AkkalavAl~~~~~r~~l~~~~~-~e~~~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~ 80 (443)
T PRK05201 6 PREIVSELDK--YIIGQDDAKRAVAIALRNRWRRMQLPEELR-DEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIK 80 (443)
T ss_pred HHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHhcCCcccc-cccCCceEEEECCCC--CCHHHHHHHHHHHhCChhee
Confidence 3444444444 2333 8899999999999877655432211 111247899999999 99999999999999999999
Q ss_pred EeccccCC
Q 000888 499 FDSHSLLG 506 (1237)
Q Consensus 499 ~d~~~~~~ 506 (1237)
+|.+.|..
T Consensus 81 vD~t~f~e 88 (443)
T PRK05201 81 VEATKFTE 88 (443)
T ss_pred ecchhhcc
Confidence 99998863
No 453
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.35 E-value=0.35 Score=55.40 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~s 1004 (1237)
+++-++|.||+|+|||+++..+|..+ +..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34678999999999999999998777 5556555543
No 454
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.34 E-value=0.04 Score=57.06 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=28.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 000888 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1006 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL 1006 (1237)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 667777765433
No 455
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.33 E-value=0.049 Score=68.30 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=62.3
Q ss_pred CccchhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cc
Q 000888 931 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 1006 (1237)
Q Consensus 931 ~vtf~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~~fi~Id~s-eL 1006 (1237)
..++++++-.....+.+++++.. +..-||++||+|+|||++..++.++++ .+++.+--+ ++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35688888888888888777642 224589999999999999888887773 345543322 22
Q ss_pred ccc-----ccc-ccHHHHHHHHHHHHhcCCcEEEEccch
Q 000888 1007 TSK-----WFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 1039 (1237)
Q Consensus 1007 ~s~-----~~G-~se~~I~~lF~~A~k~~PsILfIDEID 1039 (1237)
.-. .+. ........++..+-+..|.||+|.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 111 011 111234556677778899999999995
No 456
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.32 E-value=0.18 Score=56.61 Aligned_cols=130 Identities=14% Similarity=0.206 Sum_probs=72.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccccccc--------cc---c---HHHHHH----HHHHHH---h
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSKWF--------GE---G---EKYVKA----VFSLAS---K 1027 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~--~fi~Id~seL~s~~~--------G~---s---e~~I~~----lF~~A~---k 1027 (1237)
-++++.|++|||||+++..+...+.. ..+.+-++.....+. .. . +..+.. +-..+. .
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~ 93 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQ 93 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 47999999999999999999887733 333333222211110 00 0 111111 111111 1
Q ss_pred ---cCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccCCC
Q 000888 1028 ---IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL 1104 (1237)
Q Consensus 1028 ---~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v~~ 1104 (1237)
.++.+|++|++-.- ..-...+..+.. .. ..-++.+|..+.....|++.++.-.+..+.++
T Consensus 94 ~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~---~g---RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~- 156 (241)
T PF04665_consen 94 KKNNPRFLIILDDLGDK----------KLKSKILRQFFN---NG---RHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN- 156 (241)
T ss_pred cCCCCCeEEEEeCCCCc----------hhhhHHHHHHHh---cc---cccceEEEEEeeecccCCHHHhhcceEEEEec-
Confidence 23578999997421 011223333432 11 23467888888888999999988776666665
Q ss_pred CCHHHHHHHHHHH
Q 000888 1105 PDAPNRAKILQVI 1117 (1237)
Q Consensus 1105 Pd~eeR~eILk~~ 1117 (1237)
-+..++..|++.+
T Consensus 157 ~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 157 NSKRDLENIYRNM 169 (241)
T ss_pred CcHHHHHHHHHhc
Confidence 4566665555554
No 457
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.31 E-value=0.07 Score=68.80 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=58.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecccc----ccccccccHHHHHHHHHHH----------HhcCCcE
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSSI----TSKWFGEGEKYVKAVFSLA----------SKIAPSV 1032 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL---g--~~fi~Id~seL----~s~~~G~se~~I~~lF~~A----------~k~~PsI 1032 (1237)
-++|.|+||||||++++++...+ + ..++-+....- +....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999997765 3 34443332211 1122233333344444321 1134579
Q ss_pred EEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCc
Q 000888 1033 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1089 (1237)
Q Consensus 1033 LfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld 1089 (1237)
|+|||+..+- ..++..|+..+. .+.++++|+-.++...+.
T Consensus 420 lIvDEaSMvd------------~~~~~~Ll~~~~-----~~~rlilvGD~~QLpsV~ 459 (720)
T TIGR01448 420 LIVDESSMMD------------TWLALSLLAALP-----DHARLLLVGDTDQLPSVG 459 (720)
T ss_pred EEEeccccCC------------HHHHHHHHHhCC-----CCCEEEEECccccccCCC
Confidence 9999997661 223444444332 346899998777654443
No 458
>PRK04328 hypothetical protein; Provisional
Probab=95.30 E-value=0.17 Score=56.91 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=26.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1003 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~ 1003 (1237)
.+...+|++||||+|||+|+..++.+. |-+.+.++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 344679999999999999998876542 455555543
No 459
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.29 E-value=0.12 Score=56.09 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVA 991 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA 991 (1237)
+.++|+||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 460
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.29 E-value=0.016 Score=63.42 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
.|+++||||+|||++|+.||..+++..+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999766653
No 461
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.25 E-value=0.15 Score=54.67 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 000888 973 ILLFGPPGTGKTMLAKAVA 991 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA 991 (1237)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 462
>PLN02200 adenylate kinase family protein
Probab=95.25 E-value=0.019 Score=64.11 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+.-|+|.|+||+|||++|+.+|+.+|+. .+++.+++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34579999999999999999999999865 466666643
No 463
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.24 E-value=0.056 Score=57.27 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
+.-.++|.||+||||++|.+++|.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 33579999999999999999999765
No 464
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.24 E-value=0.016 Score=63.27 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 973 ILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
|+|+||||+|||++|+.||..++++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998776654
No 465
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.20 E-value=0.027 Score=65.36 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=31.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 000888 967 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1002 (1237)
Q Consensus 967 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id 1002 (1237)
..+...|+|.|++|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 344578999999999999999999999999999544
No 466
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.18 E-value=0.13 Score=59.07 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccc
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 1005 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL----g-~~fi~Id~se 1005 (1237)
+..++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3579999999999999999998766 3 5566666544
No 467
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.17 E-value=0.11 Score=55.18 Aligned_cols=74 Identities=22% Similarity=0.392 Sum_probs=42.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEeccccc----cc---cccc-----------------
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT----SK---WFGE----------------- 1013 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-------------g~~fi~Id~seL~----s~---~~G~----------------- 1013 (1237)
.-++|+||+|+|||+++..++..+ +..++.++...-. .. ..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 358999999999999999887755 2356666653210 00 0000
Q ss_pred ------------cHHHHHHHHHHHHh-cCCcEEEEccchhhhcC
Q 000888 1014 ------------GEKYVKAVFSLASK-IAPSVIFVDEVDSMLGR 1044 (1237)
Q Consensus 1014 ------------se~~I~~lF~~A~k-~~PsILfIDEID~L~~~ 1044 (1237)
....+..+...+.. ..+.+|+||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 12223455566666 57899999999999865
No 468
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.16 E-value=0.016 Score=56.85 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 000888 973 ILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eL 994 (1237)
|+|.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.16 E-value=0.046 Score=58.60 Aligned_cols=69 Identities=32% Similarity=0.503 Sum_probs=45.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cccc---ccc----------cccHHHHHHHHHHHHhcCCcEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KWF----------GEGEKYVKAVFSLASKIAPSVIF 1034 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg--~~fi~Id~s-eL~s---~~~----------G~se~~I~~lF~~A~k~~PsILf 1034 (1237)
..++|.||+|+|||+++++++..+. ...+.+... ++.. .+. +........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998773 223322211 1100 000 11123456677777788899999
Q ss_pred Eccch
Q 000888 1035 VDEVD 1039 (1237)
Q Consensus 1035 IDEID 1039 (1237)
+.|+-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99994
No 470
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.13 E-value=0.05 Score=64.22 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA 994 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL 994 (1237)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 471
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.13 E-value=0.035 Score=65.20 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE-ecccccc-c-------c-----ccccHHHHHHHHHHHHhcCCcEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG--ANFINI-SMSSITS-K-------W-----FGEGEKYVKAVFSLASKIAPSVIF 1034 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg--~~fi~I-d~seL~s-~-------~-----~G~se~~I~~lF~~A~k~~PsILf 1034 (1237)
.++|+.|++|+|||+++++++..+. ..++.+ +..++.- . . .+...-....++..+-+..|..|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 5799999999999999999998884 233333 1122211 0 0 011122356788888899999999
Q ss_pred Eccch
Q 000888 1035 VDEVD 1039 (1237)
Q Consensus 1035 IDEID 1039 (1237)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99995
No 472
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.038 Score=65.58 Aligned_cols=36 Identities=33% Similarity=0.536 Sum_probs=32.8
Q ss_pred ceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccccC
Q 000888 468 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLL 505 (1237)
Q Consensus 468 ~iLLsgp~GsE~Yqe~LakALA~~f~a~ll~~d~~~~~ 505 (1237)
-|||-||.| -.++.||+-||+-+.+++-|-|.+.|.
T Consensus 228 NvLllGPtG--sGKTllaqTLAr~ldVPfaIcDcTtLT 263 (564)
T KOG0745|consen 228 NVLLLGPTG--SGKTLLAQTLARVLDVPFAICDCTTLT 263 (564)
T ss_pred cEEEECCCC--CchhHHHHHHHHHhCCCeEEecccchh
Confidence 489999999 699999999999999999999987663
No 473
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.12 E-value=0.088 Score=55.24 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=42.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccc--------cccccc----c-HHHHHHHHHHHHhcCCcEE
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSIT--------SKWFGE----G-EKYVKAVFSLASKIAPSVI 1033 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eLg~--~fi~Id~seL~--------s~~~G~----s-e~~I~~lF~~A~k~~PsIL 1033 (1237)
+...+.|.||.|+|||+|.+.|+..... --+.++...+. ...++. + -+.-+-.+..|--..|.||
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 3357999999999999999999977521 11223221111 000110 1 1122334555666789999
Q ss_pred EEccchh
Q 000888 1034 FVDEVDS 1040 (1237)
Q Consensus 1034 fIDEID~ 1040 (1237)
++||-..
T Consensus 105 llDEP~~ 111 (163)
T cd03216 105 ILDEPTA 111 (163)
T ss_pred EEECCCc
Confidence 9999753
No 474
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.22 Score=63.06 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=51.3
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCccccc
Q 000888 691 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 770 (1237)
Q Consensus 691 ~p~ILfi~di~~~~~~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r~ 770 (1237)
..-|++|||+|.+ +....+.|.+.|+..++.+.+|.+++....
T Consensus 118 k~KV~IIDEVh~L---S~~A~NALLKtLEEPP~~v~FILaTtd~~k---------------------------------- 160 (702)
T PRK14960 118 RFKVYLIDEVHML---STHSFNALLKTLEEPPEHVKFLFATTDPQK---------------------------------- 160 (702)
T ss_pred CcEEEEEechHhc---CHHHHHHHHHHHhcCCCCcEEEEEECChHh----------------------------------
Confidence 4469999999974 234667788899988899999988875431
Q ss_pred cccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000888 771 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 810 (1237)
Q Consensus 771 ~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL 810 (1237)
+...|..|. ..|++..++.+.-.+.++..+
T Consensus 161 ---------Ip~TIlSRC-q~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 161 ---------LPITVISRC-LQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred ---------hhHHHHHhh-heeeccCCCHHHHHHHHHHHH
Confidence 223344556 688888888777666665444
No 475
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.09 E-value=0.71 Score=53.29 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 000888 968 KPCKGILLFGPPGTGKTMLAKAVATEAG 995 (1237)
Q Consensus 968 kP~~gVLL~GPPGTGKT~LAkAIA~eLg 995 (1237)
.++..|.|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999988874
No 476
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.07 E-value=2.6 Score=50.95 Aligned_cols=203 Identities=21% Similarity=0.247 Sum_probs=112.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc---------------cccccc-----ccHHHHHHHHH
Q 000888 967 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI---------------TSKWFG-----EGEKYVKAVFS 1023 (1237)
Q Consensus 967 ~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL---------------~s~~~G-----~se~~I~~lF~ 1023 (1237)
.+||.-||+.|--|+||||.+--+|..+ +..+.-+.+..+ --.+++ .+....+...+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 3566789999999999999999999888 555555554332 001111 12345677888
Q ss_pred HHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhccccccC-
Q 000888 1024 LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMV- 1102 (1237)
Q Consensus 1024 ~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~v- 1102 (1237)
.|+.....||++|=..++- .-..+++++...-+-+. +.+-++|+=++---+..+ ....|+..+.+
T Consensus 177 ~ak~~~~DvvIvDTAGRl~----------ide~Lm~El~~Ik~~~~--P~E~llVvDam~GQdA~~--~A~aF~e~l~it 242 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLH----------IDEELMDELKEIKEVIN--PDETLLVVDAMIGQDAVN--TAKAFNEALGIT 242 (451)
T ss_pred HHHHcCCCEEEEeCCCccc----------ccHHHHHHHHHHHhhcC--CCeEEEEEecccchHHHH--HHHHHhhhcCCc
Confidence 8998888999999887661 12345555544444433 234455554433222111 11134433332
Q ss_pred ----CCCCHHHHHHH---HHHHHhh--------CCCC--ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000888 1103 ----NLPDAPNRAKI---LQVILAK--------EDLS--PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 1165 (1237)
Q Consensus 1103 ----~~Pd~eeR~eI---Lk~~L~~--------~~l~--~d~dl~~LA~~T~GySgaDL~~L~~~Aa~~aireil~~e~~ 1165 (1237)
...|-+.|--- ++..+.. +.+. +.++.+.+|.+.=|. .|+..|++.|....-.+-.+...
T Consensus 243 GvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGM--GDv~sLvEk~~~~~d~e~a~~~~- 319 (451)
T COG0541 243 GVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGM--GDVLSLIEKAEEVVDEEEAEKLA- 319 (451)
T ss_pred eEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCc--ccHHHHHHHHHHhhhHHHHHHHH-
Confidence 33444444221 1111211 1111 345678888887663 48999988887653332111111
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 000888 1166 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 1202 (1237)
Q Consensus 1166 ~~~~a~~e~~~~~~~~~~~~~r~Lt~eDF~~AL~~v~ 1202 (1237)
.... . ...|.+||.+-++++.
T Consensus 320 ---~kl~------------~-g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 320 ---EKLK------------K-GKFTLEDFLEQLEQMK 340 (451)
T ss_pred ---HHHH------------h-CCCCHHHHHHHHHHHH
Confidence 0011 1 2389999999888764
No 477
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.078 Score=64.86 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=54.3
Q ss_pred CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEEeeccCCCccccCCCCCccccccCCcccccccccCCCcccc
Q 000888 690 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 769 (1237)
Q Consensus 690 ~~p~ILfi~di~~~~~~~~~~~~~lk~~L~~l~g~vvvIGst~~~d~~~~~~~~~~~~l~r~gr~~~~l~d~al~~~~~r 769 (1237)
...-|++|||+|.+ +.+..+.|-+.|+.-++++++|.+||....
T Consensus 120 g~~KV~IIDEah~L---s~~A~NALLKtLEEPp~~viFILaTte~~k--------------------------------- 163 (484)
T PRK14956 120 GKYKVYIIDEVHML---TDQSFNALLKTLEEPPAHIVFILATTEFHK--------------------------------- 163 (484)
T ss_pred CCCEEEEEechhhc---CHHHHHHHHHHhhcCCCceEEEeecCChhh---------------------------------
Confidence 45679999999985 455677777888888899999999997542
Q ss_pred ccccCCCchHHHHHHhhhCCCeEEEeCCCHHHHHHHHHHhh
Q 000888 770 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 810 (1237)
Q Consensus 770 ~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IwK~qL 810 (1237)
+...|..|. +.+.+..+..+.-.+.++...
T Consensus 164 ----------I~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 164 ----------IPETILSRC-QDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred ----------ccHHHHhhh-heeeecCCCHHHHHHHHHHHH
Confidence 344566667 678888888776555555433
No 478
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.06 E-value=0.081 Score=55.63 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1004 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~s 1004 (1237)
-+++.|+||+|||+++..+|..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 37899999999999999998876 6667666654
No 479
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.019 Score=60.28 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFIN 1000 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~ 1000 (1237)
-|-+.||||||||++|+.||..+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36789999999999999999999999876
No 480
>PRK06696 uridine kinase; Validated
Probab=95.03 E-value=0.053 Score=59.84 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=32.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1007 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~ 1007 (1237)
+.-|.|.|++|+|||+||+.|+..+ |.+++.+++.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3579999999999999999999999 6778887776654
No 481
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.96 E-value=0.058 Score=62.76 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=66.0
Q ss_pred CCCCceeEeeccCCCCcceeeccCCCCCCCC-CC---CCCCCCC-ccccccccccccCCCcchhHHHHHHHHHHHHhhhc
Q 000888 614 GTRGKVALLFEDNPSSKIGVRFDKPIPDGVD-LG---GQCEGGH-GFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSES 688 (1237)
Q Consensus 614 g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~-l~---~~c~~~~-~ff~~~~~~~l~~~~~e~~~k~~i~~L~ev~~~~~ 688 (1237)
|++|.+.-..|-|.- =-.+|=+|||+||| || ...+..+ -||..-.|-.- =+. -++.+||....+.
T Consensus 148 ~q~gllrs~ieq~~i--pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a--~t~------dvR~ife~aq~~~ 217 (554)
T KOG2028|consen 148 GQDGLLRSLIEQNRI--PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA--KTN------DVRDIFEQAQNEK 217 (554)
T ss_pred CcchHHHHHHHcCCC--CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc--chH------HHHHHHHHHHHHH
Confidence 445555444553321 12688999999999 44 3444445 34443333211 111 3556677665543
Q ss_pred c--CCCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEEeeccCC
Q 000888 689 R--SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTD 735 (1237)
Q Consensus 689 ~--~~p~ILfi~di~~~~~~~~~~~~~lk~~L~~l~g~vvvIGst~~~d 735 (1237)
. ...-||||||||.+=.-++|. |-++.+. |-|++||+||-..
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~---fLP~VE~--G~I~lIGATTENP 261 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDT---FLPHVEN--GDITLIGATTENP 261 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhc---ccceecc--CceEEEecccCCC
Confidence 3 567899999999965555555 4566665 9999999999654
No 482
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.1 Score=60.42 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=33.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1006 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL 1006 (1237)
.-++|+||+++|||.||-++|+.++.+++.+|.-.+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 469999999999999999999999999999997655
No 483
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.89 E-value=0.13 Score=59.94 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1005 (1237)
Q Consensus 970 ~~gVLL~GPPGTGKT~LAkAIA~eL---------g~~fi~Id~se 1005 (1237)
..-++|+||||+|||.++..+|... +..+++++..+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 3568899999999999999998663 34677887654
No 484
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.89 E-value=0.13 Score=61.15 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEcchhhhh-c-CCcchhhhHHHHHhcCCC-cEEEEEeeccCCCccccCCCCCccccc
Q 000888 674 KLLINTLFEVVFSESRSCPFILFMKDAEKSI-A-GNSDSYSTFKSRLEKLPD-KVIVIGSHTHTDNRKEKSHPGGLLFTK 750 (1237)
Q Consensus 674 k~~i~~L~ev~~~~~~~~p~ILfi~di~~~~-~-~~~~~~~~lk~~L~~l~g-~vvvIGst~~~d~~~~~~~~~~~~l~r 750 (1237)
+.+++.+.+.+.+ +..++||+|||+|.+. . +...++..+ ..+..+.+ +|.|||..+..+-
T Consensus 123 ~~~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~-~~~~~~~~~~v~vI~i~~~~~~-------------- 185 (394)
T PRK00411 123 DELFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLL-RAHEEYPGARIGVIGISSDLTF-------------- 185 (394)
T ss_pred HHHHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHH-HhhhccCCCeEEEEEEECCcch--------------
Confidence 3455566665554 3568999999999987 2 233444443 34444555 7888888886541
Q ss_pred cCCcccccccccCCCccccccccCCCchHHHHHHhhhC-CCeEEEeCCCHHHHHHHHHHhhh
Q 000888 751 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 811 (1237)
Q Consensus 751 ~gr~~~~l~d~al~~~~~r~~~~~~~~~~~d~~L~rrF-~~~IeI~LPdeE~RL~IwK~qL~ 811 (1237)
.+ + .+..+..+| +..|.+++++.++..+||+..+.
T Consensus 186 --------~~--------~----------l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 186 --------LY--------I----------LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred --------hh--------h----------cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 00 0 122233334 46789999999999999987653
No 485
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.88 E-value=0.21 Score=54.93 Aligned_cols=112 Identities=24% Similarity=0.388 Sum_probs=68.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc--------------------------------ccccc-cccHH
Q 000888 973 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI--------------------------------TSKWF-GEGEK 1016 (1237)
Q Consensus 973 VLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL--------------------------------~s~~~-G~se~ 1016 (1237)
+|+.|+.|||||.|.+.++.-+ +.....++...- -..|- +....
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~ 110 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARK 110 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHH
Confidence 8899999999999999998654 333333322100 00111 12234
Q ss_pred HHHHHHHHHHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecCCCCCCcHHHHhhc
Q 000888 1017 YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRL 1096 (1237)
Q Consensus 1017 ~I~~lF~~A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRF 1096 (1237)
.+..+.+..+.....||+||-+..++...+ .....+|+..++.+.. .++++++ |-.|..++++.+-|+
T Consensus 111 ~L~~l~~~~k~~~~dViIIDSls~~~~~~~--------~~~vl~fm~~~r~l~d--~gKvIil--Tvhp~~l~e~~~~ri 178 (235)
T COG2874 111 LLDLLLEFIKRWEKDVIIIDSLSAFATYDS--------EDAVLNFMTFLRKLSD--LGKVIIL--TVHPSALDEDVLTRI 178 (235)
T ss_pred HHHHHHhhHHhhcCCEEEEecccHHhhccc--------HHHHHHHHHHHHHHHh--CCCEEEE--EeChhhcCHHHHHHH
Confidence 556666666777789999999988763321 2233445555555532 3455554 455788888777665
No 486
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.86 E-value=0.22 Score=54.80 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1003 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~ 1003 (1237)
+...++|.|+||+|||+++..++.+. +...+.++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34679999999999999999877543 445555553
No 487
>PRK14527 adenylate kinase; Provisional
Probab=94.85 E-value=0.022 Score=61.10 Aligned_cols=31 Identities=35% Similarity=0.655 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1001 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~I 1001 (1237)
.-++++||||+|||++|+.+|+.+++..+..
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 5699999999999999999999998765443
No 488
>PRK04182 cytidylate kinase; Provisional
Probab=94.85 E-value=0.025 Score=59.20 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 000888 972 GILLFGPPGTGKTMLAKAVATEAGANFIN 1000 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eLg~~fi~ 1000 (1237)
.|+|.|++|+|||++|+++|+.++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999988765
No 489
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.83 E-value=0.076 Score=57.52 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccccc
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 1008 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL-g~~fi~Id~seL~s 1008 (1237)
.|.-+++.|+||+|||+++..+...+ +..++.++..++..
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34779999999999999999999998 88889998877643
No 490
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.82 E-value=0.2 Score=61.90 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=52.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc----------------------ccHHH
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG----------------------EGEKY 1017 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~s~------~~G----------------------~se~~ 1017 (1237)
+...+||.||||+|||+|+..++.+. |-+.++++..+-... .+| ..+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 33579999999999999999998765 556666665332000 000 11456
Q ss_pred HHHHHHHHHhcCCcEEEEccchhhh
Q 000888 1018 VKAVFSLASKIAPSVIFVDEVDSML 1042 (1237)
Q Consensus 1018 I~~lF~~A~k~~PsILfIDEID~L~ 1042 (1237)
+..+.+.+....|.+|+||-+..+.
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6777778888889999999999875
No 491
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.22 Score=59.37 Aligned_cols=97 Identities=21% Similarity=0.325 Sum_probs=68.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccccc------ccc--------cccHHHHHHHHHHHHhcCCcE
Q 000888 969 PCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITS------KWF--------GEGEKYVKAVFSLASKIAPSV 1032 (1237)
Q Consensus 969 P~~gVLL~GPPGTGKT~LAkAIA~eL--g~~fi~Id~seL~s------~~~--------G~se~~I~~lF~~A~k~~PsI 1032 (1237)
|..-+||-|.||.|||+|.-.+|..+ ..++++++..+-.. +-. -..|..+..+...+....|.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~l 171 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDL 171 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCE
Confidence 43569999999999999888887766 33788888765311 111 123556778888888899999
Q ss_pred EEEccchhhhcCCC--CCchhHHHHHHHHHHHHHh
Q 000888 1033 IFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNW 1065 (1237)
Q Consensus 1033 LfIDEID~L~~~r~--~~~~~~a~~~il~eLL~~l 1065 (1237)
++||-|..++...- .++.-...+...++|+..-
T Consensus 172 vVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 172 VVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred EEEeccceeecccccCCCCcHHHHHHHHHHHHHHH
Confidence 99999999986542 2344445566666665543
No 492
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.81 E-value=0.27 Score=62.98 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=32.7
Q ss_pred CCeEEEEcchhhhhcCCcchhhhHHHHHhcCCCcEEEEEeeccCC
Q 000888 691 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTD 735 (1237)
Q Consensus 691 ~p~ILfi~di~~~~~~~~~~~~~lk~~L~~l~g~vvvIGst~~~d 735 (1237)
.--|++|||+|.+ +.+..|.|-+.|+.-+.++++|.++|...
T Consensus 119 r~KVIIIDEah~L---T~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 119 RFKVYMIDEVHML---TNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred CceEEEEeChhhC---CHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 4459999999985 33456667778988888999999988664
No 493
>PTZ00202 tuzin; Provisional
Probab=94.80 E-value=0.49 Score=57.31 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=45.9
Q ss_pred chhccccHHHHHHHHHHHhCccCchhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 000888 934 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1004 (1237)
Q Consensus 934 f~dI~Gle~vK~~L~e~V~~pl~~pe~f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~~fi~Id~s 1004 (1237)
..++.|-+.....|...+... ....| .-++|.|++|+|||+|++.++..++.+.+.++..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~----------d~~~p-rivvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRL----------DTAHP-RIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhcc----------CCCCc-eEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 457889999999998877531 11122 4689999999999999999999998776666654
No 494
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.79 E-value=0.059 Score=69.04 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=62.1
Q ss_pred CCeeEEcCC---CCcceeecCCCCccceEEEEEEecCCceEEEEEEeCCCceEEcCeeecCCCeeEccCCCEEEEeecCC
Q 000888 144 ASIFTVGSS---RQCNFPLKDQAISAVLCKIKHVQSEGSAVAMVESIGSKGLQVNGKNLKKNTSCELRSGDEVVFGSLGN 220 (1237)
Q Consensus 144 ~~~~tvGr~---~~Cd~~l~~~~~s~~~c~i~~~~~~~~~~~~led~s~nGt~VNg~~~~k~~~~~L~~gDeI~f~~~~~ 220 (1237)
..+=.|||. ..-||.|.+..|---||-|+.. +|+.|+.|+=-..--|||||+.|.- ...|.+||.|+|+. +
T Consensus 476 eG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~--~g~~~vtl~p~e~aetyVNGk~v~e--p~qL~~GdRiilG~--~ 549 (1221)
T KOG0245|consen 476 EGETRVGREDASSRQDIVLSGQLIREQHCSIRNE--GGNDVVTLEPCEDAETYVNGKLVTE--PTQLRSGDRIILGG--N 549 (1221)
T ss_pred cCceecCCCCcccCCceEecchhhhhhceEEEec--CCCceEEeccCCccceeEccEEcCC--cceeccCCEEEEcC--c
Confidence 466789974 4679999999999999999876 3333556654444449999999976 78999999999975 7
Q ss_pred eeEEEEec
Q 000888 221 HAYIFQQL 228 (1237)
Q Consensus 221 ~ayiF~~l 228 (1237)
|+|.|.+.
T Consensus 550 H~frfn~P 557 (1221)
T KOG0245|consen 550 HVFRFNHP 557 (1221)
T ss_pred eeEEecCH
Confidence 88888755
No 495
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.78 E-value=0.053 Score=63.40 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=46.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cccccc------ccccccHHHHHHHHHHHHhcCCcEEEEccc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1038 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id-~seL~s------~~~G~se~~I~~lF~~A~k~~PsILfIDEI 1038 (1237)
.++|+.|++|+|||+++++++... +..++.+. ..++.. .+.....-....++..+-+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 479999999999999999999876 22333332 223211 011111223566778888899999999998
Q ss_pred h
Q 000888 1039 D 1039 (1237)
Q Consensus 1039 D 1039 (1237)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 4
No 496
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.77 E-value=0.048 Score=63.69 Aligned_cols=69 Identities=26% Similarity=0.433 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cccccc------ccccccHHHHHHHHHHHHhcCCcEEEEccc
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1038 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~~fi~Id-~seL~s------~~~G~se~~I~~lF~~A~k~~PsILfIDEI 1038 (1237)
.++++.|++|+|||+++++++... ...++.+. ..++.- .+....+.....++..+-+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 589999999999999999999874 12233322 222210 111111234567888888999999999999
Q ss_pred h
Q 000888 1039 D 1039 (1237)
Q Consensus 1039 D 1039 (1237)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 4
No 497
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.76 E-value=0.045 Score=63.50 Aligned_cols=69 Identities=25% Similarity=0.429 Sum_probs=45.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-cccccc---cc----c-----cccHHHHHHHHHHHHhcCCcEEEE
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEAG--ANFINIS-MSSITS---KW----F-----GEGEKYVKAVFSLASKIAPSVIFV 1035 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eLg--~~fi~Id-~seL~s---~~----~-----G~se~~I~~lF~~A~k~~PsILfI 1035 (1237)
.++++.||+|+|||+++++++..+. ...+.+. ..++.. .+ . +...-....++..+-+..|.+|++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~ 224 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIIL 224 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEE
Confidence 5899999999999999999998773 2222322 112110 00 0 111223466777788889999999
Q ss_pred ccch
Q 000888 1036 DEVD 1039 (1237)
Q Consensus 1036 DEID 1039 (1237)
||+-
T Consensus 225 gE~r 228 (308)
T TIGR02788 225 GELR 228 (308)
T ss_pred eccC
Confidence 9985
No 498
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.75 E-value=0.36 Score=61.89 Aligned_cols=153 Identities=23% Similarity=0.276 Sum_probs=84.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccc--c------------ccccc---ccc-------------HHHH
Q 000888 971 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSS--I------------TSKWF---GEG-------------EKYV 1018 (1237)
Q Consensus 971 ~gVLL~GPPGTGKT~LAkAIA~eL--g~~fi~Id~se--L------------~s~~~---G~s-------------e~~I 1018 (1237)
+-+||.-|.|.|||+++...+..+ +..+..+++.+ - +..+. +.. +..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 569999999999999999998643 45555544432 1 01111 111 1234
Q ss_pred HHHHHH-HHhcCCcEEEEccchhhhcCCCCCchhHHHHHHHHHHHHHhcCCcccCCccEEEEEecC-CCCCCcHHHHhhc
Q 000888 1019 KAVFSL-ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN-RPFDLDEAVIRRL 1096 (1237)
Q Consensus 1019 ~~lF~~-A~k~~PsILfIDEID~L~~~r~~~~~~~a~~~il~eLL~~ldgl~~~~~~~VlVIaTTN-~p~~Ld~aLlrRF 1096 (1237)
..+|.+ +....|..|||||.+.+- ++..++ .++-|+... +.++.+|.+|. +|. +.-+-.|-=
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~----~l~fLl~~~-------P~~l~lvv~SR~rP~-l~la~lRlr 181 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DPALHE----ALRFLLKHA-------PENLTLVVTSRSRPQ-LGLARLRLR 181 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cccHHH----HHHHHHHhC-------CCCeEEEEEeccCCC-Ccccceeeh
Confidence 455544 445578999999999773 222233 333343221 34566666664 332 111111100
Q ss_pred cccccCC----CCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCcH
Q 000888 1097 PRRLMVN----LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 1141 (1237)
Q Consensus 1097 d~~I~v~----~Pd~eeR~eILk~~L~~~~l~~d~dl~~LA~~T~GySg 1141 (1237)
+..++++ ..+.++-.++|..... .. -+..++..|-..++|+..
T Consensus 182 ~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~-Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 182 DELLEIGSEELRFDTEEAAAFLNDRGS-LP-LDAADLKALYDRTEGWAA 228 (894)
T ss_pred hhHHhcChHhhcCChHHHHHHHHHcCC-CC-CChHHHHHHHhhcccHHH
Confidence 1223332 2477888888877541 11 245677888888888764
No 499
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.72 E-value=0.14 Score=58.56 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=37.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc---cccc-cccHHHHHHHHHHHH---hcCCcEEEEccchhh
Q 000888 972 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT---SKWF-GEGEKYVKAVFSLAS---KIAPSVIFVDEVDSM 1041 (1237)
Q Consensus 972 gVLL~GPPGTGKT~LAkAIA~eL---g~~fi~Id~seL~---s~~~-G~se~~I~~lF~~A~---k~~PsILfIDEID~L 1041 (1237)
=|+|+|-||+|||++|+.|+..+ +..++.++-..+. ..|. ...|+.++..+..+- -....||++|+...+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 38999999999999999999876 5677777754442 1121 223555544332221 123479999998766
No 500
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.71 E-value=0.027 Score=57.99 Aligned_cols=32 Identities=38% Similarity=0.713 Sum_probs=26.1
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 000888 975 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 975 L~GPPGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
|.||||+|||++|+.||+.+++ +.+++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHH
Confidence 6899999999999999999975 5566655544
Done!