Query 000888
Match_columns 1237
No_of_seqs 559 out of 3932
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 16:54:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000888.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_657-660//hhsearch_pdb/000888hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 588.9 20.5 550 423-1225 199-765 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 418.1 5.0 541 424-1224 200-764 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 361.5 25.7 252 929-1209 142-397 (405)
4 4b4t_I 26S protease regulatory 1.0 1 1 355.8 22.5 254 928-1210 175-432 (437)
5 4b4t_H 26S protease regulatory 1.0 1 1 355.8 25.9 261 929-1219 203-467 (467)
6 4b4t_M 26S protease regulatory 1.0 1 1 352.9 24.9 252 928-1208 174-429 (434)
7 4b4t_L 26S protease subunit RP 1.0 1 1 350.9 23.6 258 929-1220 175-436 (437)
8 3cf2_A TER ATPase, transitiona 1.0 1 1 349.9 12.5 287 930-1229 199-487 (806)
9 4b4t_K 26S protease regulatory 1.0 1 1 340.1 26.2 249 929-1206 166-420 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 304.5 29.1 289 930-1226 7-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=588.92 Aligned_cols=550 Identities=26% Similarity=0.437 Sum_probs=433.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 23322334434304589999987652036775112123335689913640689705889999999985719919998445
Q 000888 423 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 502 (1237)
Q Consensus 423 ~~vsf~~FpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~d~~ 502 (1237)
-+|+|++...+ +..|..|.+....+|+|+++.+.. -...++.|||+|||| +++.+||||+|++.++.++.++.+
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~--g~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSC--CCCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHHHHC--CCCCCCEEEEECCCC--CCHHHHHHHHHHHHCCEEEEEEHH
T ss_conf 99990351499--999999999999875198988635--899997589779899--988999999999719839999737
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65799863567652038865334565567997134532017788888999999999999999996445666554455554
Q 000888 503 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 582 (1237)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 582 (1237)
.+.
T Consensus 273 ~l~----------------------------------------------------------------------------- 275 (806)
T 3cf2_A 273 EIM----------------------------------------------------------------------------- 275 (806)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
T ss_conf 954-----------------------------------------------------------------------------
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22335772567327899999989999999987777166731149998611002489999787898777887521012543
Q 000888 583 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 662 (1237)
Q Consensus 583 ~~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~ 662 (1237)
T Consensus 276 -------------------------------------------------------------------------------- 275 (806)
T 3cf2_A 276 -------------------------------------------------------------------------------- 275 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCC----CCCHHHHHHHHH----HCC--CCCEEEEEEEC
Q ss_conf 44688840147999999999986301579849998261434127----942255699987----219--99489997303
Q 000888 663 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSDSYSTFKSRL----EKL--PDKVIVIGSHT 732 (1237)
Q Consensus 663 ~l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~~~g----~~~~~~~lk~~L----~~l--~g~VvvIGstt 732 (1237)
++|+|+ .+..++.+|+.+.. .+|+||||||+|.++.. +.+....+...| +.+ .++|+|||+||
T Consensus 276 --sk~~ge--se~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 276 --SKLAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp --SSCTTH--HHHHHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred --CCCCHH--HHHHHHHHHHHHHH---CCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf --333167--89999999999997---29929998510023344577887399999999999974666669879999669
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 68983345899986201357751000124578843543334787047888985418973997179988899999974345
Q 000888 733 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 812 (1237)
Q Consensus 733 ~~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IlK~qL~~ 812 (1237)
+++.+||+ |+|||| |+++|+|++|+.++|.+||+.++..
T Consensus 349 ~~d~LD~A-------LrR~GR----------------------------------Fd~~I~i~~Pd~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 349 RPNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp STTTSCTT-------TTSTTS----------------------------------SCEEEECCCCCHHHHHHHHHHTCSS
T ss_pred CHHHCCHH-------HHCCCC----------------------------------CCEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 80326988-------857863----------------------------------6168866897989999999998568
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHHH
Q ss_conf 45343103783047787321799866721201123332347788999999975650399999---755410152026568
Q 000888 813 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD---PDARLVLSCESIQYG 889 (1237)
Q Consensus 813 ~~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lc~~d~~ls~~~ie~iV~~A~s~~l~~~~~p~---~~~kl~Ls~esl~~a 889 (1237)
.....+++....+..++||.|+||..+|.++.+.+....... +....... ......+..++|..+
T Consensus 388 ----~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~--------i~~~~~~~~~e~~~~~~v~~~Df~~A 455 (806)
T 3cf2_A 388 ----MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL--------IDLEDETIDAEVMNSLAVTMDDFRWA 455 (806)
T ss_dssp ----SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHH--------GGGTCCCCSHHHHHHCEECTTHHHHH
T ss_pred ----CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC--------CCCCCCCCCHHHHCCCEEEHHHHHHH
T ss_conf ----998864389999975689989999999999999999841451--------20001332045522556519999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
Q ss_conf 87999999866653101245579779999872286799998766100004099999999998572576255630888899
Q 000888 890 IGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP 969 (1237)
Q Consensus 890 l~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k~~~~kP 969 (1237)
+...++ .. ..+ .....+.++|++++|++++++.|++.+.+|+.+++.|.+.+. +|
T Consensus 456 l~~~~p---s~--------------------~r~-~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~-~~ 510 (806)
T 3cf2_A 456 LSQSNP---SA--------------------LRE-TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TP 510 (806)
T ss_dssp HSSSSC---CC--------------------CCC-CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCC-CC
T ss_pred HHHCCC---CC--------------------CCC-CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CC
T ss_conf 972878---31--------------------123-444578878888178899999999999756668999971488-88
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCC-
Q ss_conf 8169999379882999999999991995899955632100124408999999999972199179993420100488998-
Q 000888 970 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP- 1048 (1237)
Q Consensus 970 ~~gILL~GPpGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~~r~~~- 1048 (1237)
++++|||||||||||++|+++|++++.+|+.++.++++++|+|++++.++++|..|++.+||||||||||.|++.|...
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~ 590 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC-------
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCC
T ss_conf 86079866877896399999999838966874241121033436899999999999972996352042567763158888
Q ss_pred -CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf -4269999899999988238865677648999832899998499982--0343536999998899999999984179999
Q 000888 1049 -GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSP 1125 (1237)
Q Consensus 1049 -~~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~~ILk~~l~k~~i~~ 1125 (1237)
.......+++++||+.|+++.. ..+|+||++||+|+.||++++| ||++.|+|++|+.++|.+||+.++++..+..
T Consensus 591 ~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~ 668 (806)
T 3cf2_A 591 GDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668 (806)
T ss_dssp -------CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 89866999999999999748787--7998999937980438984717785507999799699999999999856799987
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 04199999975899199999999999977799999999999999875199999877988876645999999999823676
Q 000888 1126 DVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 1205 (1237)
Q Consensus 1126 didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~~~~~~~a~ae~~~~~~~~~~~~~r~Vt~eDf~~Al~~v~pS~ 1205 (1237)
++++..||++|+||+|+||.++|++|++.++++.++............ ............++|+++||++|++++.||+
T Consensus 669 ~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTN-PSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp C----------------CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC-------
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 789999997689999999999999999999999998564443330157-4100123345668647999999998679999
Q ss_pred CCCCCCHHHHHHHHHHHCCC
Q ss_conf 54422223568999973499
Q 000888 1206 SSESVNMSELLQWNELYGEG 1225 (1237)
Q Consensus 1206 s~~~~~~~~~~~W~di~G~~ 1225 (1237)
+.+.+ ..|.+|.+.++..
T Consensus 748 s~~~l--~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 748 SDNDI--RKYEMFAQTLQQS 765 (806)
T ss_dssp ----------CCCC------
T ss_pred CHHHH--HHHHHHHHHHHCC
T ss_conf 99999--9999999997253
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=418.09 Aligned_cols=541 Identities=26% Similarity=0.440 Sum_probs=401.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 33223344343045899999876520367751121233356899136406897058899999999857199199984456
Q 000888 424 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 503 (1237)
Q Consensus 424 ~vsf~~FpYylse~tk~~L~~~~~~hL~~~~~~~~~~~l~~~~~~ILLsgp~GsE~Yqe~LaKALA~~f~a~lL~~d~~~ 503 (1237)
.++|+++-.+ +..+..|.+....+|+++++.+... ......|||.||+| +.+++||||||+..+..++.++...
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l~--i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSSC--CCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred CCCHHHHCCH--HHHHHHHHHHHHHHHHCHHHHHHCC--CCCCCEEEEECCCC--CCHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 8998882880--9999999999998742989998638--89997389989399--9879999999997199689997557
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 57998635676520388653345655679971345320177888889999999999999999964456665544555542
Q 000888 504 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 583 (1237)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 583 (1237)
+.+
T Consensus 274 l~~----------------------------------------------------------------------------- 276 (806)
T 1ypw_A 274 IMS----------------------------------------------------------------------------- 276 (806)
T ss_dssp HSS-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
T ss_conf 654-----------------------------------------------------------------------------
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23357725673278999999899999999877771667311499986110024899997878987778875210125434
Q 000888 584 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 663 (1237)
Q Consensus 584 ~~~~gdrvk~~g~~~~~~~~~~~~~r~~~~g~~g~v~~~~e~n~s~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 663 (1237)
T Consensus 277 -------------------------------------------------------------------------------- 276 (806)
T 1ypw_A 277 -------------------------------------------------------------------------------- 276 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC----CCHHHH----HHHHHHCC--CCCEEEEEEECC
Q ss_conf 46888401479999999999863015798499982614341279----422556----99987219--994899973036
Q 000888 664 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYST----FKSRLEKL--PDKVIVIGSHTH 733 (1237)
Q Consensus 664 l~~~~~e~~~k~~i~~L~ev~~~~~~~~p~ILfiddi~~~~~g~----~~~~~~----lk~~L~~l--~g~VvvIGstt~ 733 (1237)
+|.++ ....+..+|+.+.. ..|.||||||++.++... .+.... +...++.+ ..++++|+++|.
T Consensus 277 --~~~g~--~~~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~ 349 (806)
T 1ypw_A 277 --KLAGE--SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp --SSTTH--HHHHHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSC
T ss_pred --HHHHH--HHHHHHHHHHHHHH---CCCCEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf --41015--89999999999986---499579830077751114666316889999999998654114661787602398
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 89833458999862013577510001245788435433347870478889854189739971799888999999743454
Q 000888 734 TDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRD 813 (1237)
Q Consensus 734 ~d~~~~~~~~~~~~l~r~gr~~~~l~d~a~~~~~~r~~~~~~~~~~~d~~L~rrF~~~IeI~LPdeE~RL~IlK~qL~~~ 813 (1237)
++..+++ ++++|| |.+.+.|.+|+.+.|++||+.+..+
T Consensus 350 ~~~ld~a-------l~r~gR----------------------------------f~~~i~i~~p~~~~r~~il~~~~~~- 387 (806)
T 1ypw_A 350 PNSIDPA-------LRRFGR----------------------------------FDREVDIGIPDATGRLEILQIHTKN- 387 (806)
T ss_dssp TTTSCTT-------TTSTTS----------------------------------SCEEECCCCCCHHHHHHHHHHTTTT-
T ss_pred CHHCCHH-------HHCCCC----------------------------------CCCCCCCCCCCHHHHHHHHHHHHHC-
T ss_conf 1004999-------864655----------------------------------4443556999999999999998733-
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC----------CCCCCCCC
Q ss_conf 53431037830477873217998667212011233323477889999999756503999997----------55410152
Q 000888 814 SETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP----------DARLVLSC 883 (1237)
Q Consensus 814 ~e~l~l~~Nv~~l~~vL~~~glsgaDL~~Lc~~d~~ls~~~ie~iV~~A~s~~l~~~~~p~~----------~~kl~Ls~ 883 (1237)
+....+......+..+.++.++|+..+|.++.. .++........ .....+..
T Consensus 388 ---~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~---------------~a~r~~~~~i~~~~~~~~~~~~~~~~v~~ 449 (806)
T 1ypw_A 388 ---MKLADDVDLEQVANETHGHVGADLAALCSEAAL---------------QAIRKKMDLIDLEDETIDAEVMNSLAVTM 449 (806)
T ss_dssp ---SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHH---------------HHHHHTTTTTSCHHHHCCHHHHTTCCCCT
T ss_pred ---CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH---------------HHHHHHCCCCCHHHHCCCHHHHHHHHHHH
T ss_conf ---877622006777776147536899999999999---------------98764201011554201012444555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 02656887999999866653101245579779999872286799998766100004099999999998572576255630
Q 000888 884 ESIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK 963 (1237)
Q Consensus 884 esl~~al~~lq~i~~~~k~~k~~~k~~v~~~e~e~~ll~~ii~~~~~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k 963 (1237)
+++..++.... .. ...........++|++++|++++++.|.+.+.+++.+++.|..
T Consensus 450 ~d~~~al~~~~----------~s--------------~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~ 505 (806)
T 1ypw_A 450 DDFRWALSQSN----------PS--------------ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK 505 (806)
T ss_dssp THHHHHHHHSC----------CC--------------CCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTC
T ss_pred HHHHCCCCCCC----------CH--------------HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 65311112357----------14--------------4420002575421111244302222189999755536398975
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHC
Q ss_conf 88889981699993798829999999999919958999556321001244089999999999721991799934201004
Q 000888 964 GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLG 1043 (1237)
Q Consensus 964 ~~~~kP~~gILL~GPpGTGKT~LAkAIA~eLg~~fi~Id~seL~s~~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~ 1043 (1237)
.+. .+..++||+||||||||++|+++|.+++.+|+.++++++.+.|+|+.+..++.+|..++...|+||||||||.+..
T Consensus 506 ~~~-~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~ 584 (806)
T 1ypw_A 506 FGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp CCC-CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCC
T ss_pred CCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHH
T ss_conf 488-8775368977999878999999999848987998616765530575478899999998706985999987445421
Q ss_pred CCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88998--4269999899999988238865677648999832899998499982--0343536999998899999999984
Q 000888 1044 RRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILA 1119 (1237)
Q Consensus 1044 ~r~~~--~~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~v~~Pd~eeR~~ILk~~l~ 1119 (1237)
.+... .......+++++|+..|+++.. ..+++||+|||.++.||+++++ ||+..++++.|+.++|.+||+.++.
T Consensus 585 ~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 585 ARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp TTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 12687777641689999999998754566--6876999843871227987837655673055599799999999999864
Q ss_pred HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 17999904199999975899199999999999977799999999999999875199999877988876645999999999
Q 000888 1120 KEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 1199 (1237)
Q Consensus 1120 k~~i~~didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~~~~~~~a~ae~~~~~~~~~~~~~r~Vt~eDf~~Al~ 1199 (1237)
+..+..+.++..|++.+.||+++||.++|+.|+..++++.++........... ..............+|+++||+.|+.
T Consensus 663 ~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~f~~a~~ 741 (806)
T 1ypw_A 663 KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSAMEVEEDDPVPEIRRDHFEEAMR 741 (806)
T ss_dssp CC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-------------------------CCTTTTTTSSCCCCC
T ss_pred CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 59997522799999735005999999999999999999999987766543014-64312334346667607999999998
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 8236765442222356899997349
Q 000888 1200 RVCASVSSESVNMSELLQWNELYGE 1224 (1237)
Q Consensus 1200 ~v~pS~s~~~~~~~~~~~W~di~G~ 1224 (1237)
.+.|+++.+. +..+.+|...++.
T Consensus 742 ~~~~svs~~~--~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 742 FARRSVSDND--IRKYEMFAQTLQQ 764 (806)
T ss_dssp C------------------------
T ss_pred HCCCCCCHHH--HHHHHHHHHHHHH
T ss_conf 6789999999--9999999999976
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=361.48 Aligned_cols=252 Identities=33% Similarity=0.580 Sum_probs=230.5
Q ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98766100004099999999998572576255630888899816999937988299999999999199589995563210
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+.++|+|++|++++++.|++.|.+|+.+|+.|.+.++ +|++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 99998888288899999999999998749999986799-98882588589999878999999985188852888689511
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0124408999999999972199179993420100488998--42699998999999882388656776489998328999
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~~r~~~--~~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p~ 1086 (1237)
+|.|++++.++.+|..|+..+||||||||||.+++.+... .......+++++||..|+++.. ..+++||||||+|+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLD 298 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCHH
T ss_conf 3354689999999999987099467653341111577888999768999999999996043388--88757881269814
Q ss_pred CCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499982--0343536999998899999999984179999041999999758991999999999999777999999999
Q 000888 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1164 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~~ILk~~l~k~~i~~didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~~ 1164 (1237)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||+.|+||+|+||.++|++|++.++++
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------ 372 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------ 372 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 48996728776766997699699999999999855999996579999998779999999999999999999986------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 999998751999998779888766459999999998236765442
Q 000888 1165 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSES 1209 (1237)
Q Consensus 1165 ~~~~~a~ae~~~~~~~~~~~~~r~Vt~eDf~~Al~~v~pS~s~~~ 1209 (1237)
....|+++||+.|++++.+...+..
T Consensus 373 --------------------~~~~vt~~Df~~Al~~v~~~~~~~~ 397 (405)
T 4b4t_J 373 --------------------RRIHVTQEDFELAVGKVMNKNQETA 397 (405)
T ss_dssp --------------------TCSBCCHHHHHHHHHHHHHHHTCC-
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf --------------------9987599999999999857265554
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=355.80 Aligned_cols=254 Identities=35% Similarity=0.615 Sum_probs=230.8
Q ss_pred CCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99876610000409999999999857257625563088889981699993798829999999999919958999556321
Q 000888 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1237)
Q Consensus 928 ~~~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~eLg~~fi~Id~seL~ 1007 (1237)
..+.++|+||+|++++++.|++.+.+|+.+++.|.+.++ +|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 689986005576999999999999998769999986799-9777884488999639999999999859987998879953
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 001244089999999999721991799934201004889984--269999899999988238865677648999832899
Q 000888 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~~r~~~~--~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p 1085 (1237)
++|+|++++.++.+|..|+..+||||||||||.++..|.... ......+++++||..+++... ..+++||+|||++
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCS
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCH
T ss_conf 14476699999999999986599189876122203667788877658999999999997247678--8997999957980
Q ss_pred CCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998499982--034353699999889999999998417999904199999975899199999999999977799999999
Q 000888 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~~ILk~~l~k~~i~~didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~ 1163 (1237)
+.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..||..|+||+|+||.++|++|++.++++
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~----- 406 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE----- 406 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 555998864886027998089699999999999964899997679999997679998999999999999999984-----
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999987519999987798887664599999999982367654422
Q 000888 1164 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESV 1210 (1237)
Q Consensus 1164 ~~~~~~a~ae~~~~~~~~~~~~~r~Vt~eDf~~Al~~v~pS~s~~~~ 1210 (1237)
....|+++||+.|++++.++...+..
T Consensus 407 ---------------------~~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 407 ---------------------RRMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp ---------------------TCSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf ---------------------89966999999999987079873347
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=355.79 Aligned_cols=261 Identities=33% Similarity=0.577 Sum_probs=235.2
Q ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98766100004099999999998572576255630888899816999937988299999999999199589995563210
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+.++|+||+|++++++.|++.|.+|+.+++.|.+.++ +|++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCC-CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf 99998788545999999999999988429999987799-99981476489998099999999844689869988699502
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0124408999999999972199179993420100488998--42699998999999882388656776489998328999
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~~r~~~--~~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p~ 1086 (1237)
+|+|++++.++.+|..|+..+||||||||||.++..|... +.......+++++|..|++... ..+++||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCC
T ss_conf 6677899999999999876178467522321101355676778627899999999998655578--88379882878931
Q ss_pred CCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499982--0343536999998899999999984179999041999999758991999999999999777999999999
Q 000888 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1164 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~~ILk~~l~k~~i~~didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~~ 1164 (1237)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||++|+||+|+||.++|++|++.++++
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~------ 433 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA------ 433 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH------
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 17954636665507998389699999999999854899987779999997779999999999999999999983------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9999987519999987798887664599999999982367654422223568999
Q 000888 1165 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWN 1219 (1237)
Q Consensus 1165 ~~~~~a~ae~~~~~~~~~~~~~r~Vt~eDf~~Al~~v~pS~s~~~~~~~~~~~W~ 1219 (1237)
....++++||..|++++.++..... ....+.+||
T Consensus 434 --------------------~~~~it~~Df~~Al~kV~~g~~k~s-~~~~y~~~n 467 (467)
T 4b4t_H 434 --------------------RRKVATEKDFLKAVDKVISGYKKFS-STSRYMQYN 467 (467)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCCCH-HHHHHHHHC
T ss_conf --------------------8876699999999999964745612-578998619
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=352.88 Aligned_cols=252 Identities=33% Similarity=0.571 Sum_probs=230.9
Q ss_pred CCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99876610000409999999999857257625563088889981699993798829999999999919958999556321
Q 000888 928 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1007 (1237)
Q Consensus 928 ~~~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~eLg~~fi~Id~seL~ 1007 (1237)
..+.++|+|++|++++++.|++.+.+|+.+|+.|.+.++ +|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 897998676095799999999999999749999986799-9887268779499988999999999959988998644643
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 001244089999999999721991799934201004889984--269999899999988238865677648999832899
Q 000888 1008 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 1085 (1237)
Q Consensus 1008 s~~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~~r~~~~--~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p 1085 (1237)
++|+|++++.++.+|..|+..+||||||||||.+++.|.... .......++++||..++++.. ..+++||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCC
T ss_conf 13456389999999999986199089603325665225778888746999999999997136688--8998999948992
Q ss_pred CCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998499982--034353699999889999999998417999904199999975899199999999999977799999999
Q 000888 1086 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1086 ~~Ld~aLlr--RFd~~I~v~~Pd~eeR~~ILk~~l~k~~i~~didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~ 1163 (1237)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||+.|+||+|+||.++|++|++.++++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~----- 405 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN----- 405 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH-----
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 233996715774038998089599999999999856899987679999998689989999999999999999986-----
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 999999875199999877988876645999999999823676544
Q 000888 1164 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 1208 (1237)
Q Consensus 1164 ~~~~~~a~ae~~~~~~~~~~~~~r~Vt~eDf~~Al~~v~pS~s~~ 1208 (1237)
....|+++||..|++++.|+.++.
T Consensus 406 ---------------------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 406 ---------------------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---------------------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ---------------------998769999999999973777757
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=350.85 Aligned_cols=258 Identities=37% Similarity=0.642 Sum_probs=231.6
Q ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98766100004099999999998572576255630888899816999937988299999999999199589995563210
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ +|++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCC
T ss_conf 99989667178599999999999998749999986798-97876999899998499999999998599989984146205
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0124408999999999972199179993420100488998--42699998999999882388656776489998328999
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~~r~~~--~~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p~ 1086 (1237)
+|.|+++..++.+|..|+..+||||||||||.++..|... ........++++||..|+++.. ..+++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCH
T ss_conf 5201789999999999986389646420443333333447887536899999999998346667--79869999339903
Q ss_pred CCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499982--0343536999998899999999984179999041999999758991999999999999777999999999
Q 000888 1087 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 1164 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~~Pd~eeR~~ILk~~l~k~~i~~didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~~ 1164 (1237)
.||++++| ||++.|+|++|+.++|.+||+.++.+.....++++..||+.|+||+|+||.++|++|++.++++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred HHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC------
T ss_conf 31897827771020013599699999999999865899986458999997689999999999999999999986------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999875199999877988876645999999999823676544222235689999
Q 000888 1165 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNE 1220 (1237)
Q Consensus 1165 ~~~~~a~ae~~~~~~~~~~~~~r~Vt~eDf~~Al~~v~pS~s~~~~~~~~~~~W~d 1220 (1237)
....|+++||..|++++.++...+ ...+|..
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k~e-----~~~e~~K 436 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKKLE-----GTIEYQK 436 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC--------------
T ss_pred --------------------CCCCCCHHHHHHHHHHHHHCCCCC-----CCHHHHC
T ss_conf --------------------998779999999999987503701-----2356425
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=349.89 Aligned_cols=287 Identities=37% Similarity=0.599 Sum_probs=250.9
Q ss_pred CCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 87661000040999999999985725762556308888998169999379882999999999991995899955632100
Q 000888 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1009 (1237)
Q Consensus 930 ~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~eLg~~fi~Id~seL~s~ 1009 (1237)
..++|+|++|++++++.|++.+.+|+.+|+.|...+. +|++|+|||||||||||+||+++|++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~-~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC-CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHCC
T ss_conf 9999035149999999999999987519898863589-999758977989998899999999971983999973795433
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 12440899999999997219917999342010048899842699998999999882388656776489998328999984
Q 000888 1010 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 1089 (1237)
Q Consensus 1010 ~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~~r~~~~~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p~~Ld 1089 (1237)
+.|+.+..++.+|..|++.+||||||||||.+++.+.... ....++++++|+..|+++.. ..+|+||++||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTSC
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCHHHCC
T ss_conf 3167899999999999972992999851002334457788-73999999999999746666--69879999669803269
Q ss_pred HHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99982--0343536999998899999999984179999041999999758991999999999999777999999999999
Q 000888 1090 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 1167 (1237)
Q Consensus 1090 ~aLlr--RFd~~I~v~~Pd~eeR~~ILk~~l~k~~i~~didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~~~~~ 1167 (1237)
++++| ||++.|+++.|+.++|.+||+.++.+..+..++++..||..|+||+|+||.+||++|++.++++........
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~- 433 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE- 433 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT-
T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 8885786361688668979899999999985689988643899999756899899999999999999998414512000-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99875199999877988876645999999999823676544222235689999734998754
Q 000888 1168 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 1229 (1237)
Q Consensus 1168 ~~a~ae~~~~~~~~~~~~~r~Vt~eDf~~Al~~v~pS~s~~~~~~~~~~~W~di~G~~gsr~ 1229 (1237)
... ..........|+++||..|+..+.|+..++.....+.+.|++++|....++
T Consensus 434 ------~~~--~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 434 ------DET--IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp ------CCC--CSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred ------CCC--CCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
T ss_conf ------133--204552255651999999997287831123444578878888178899999
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=340.08 Aligned_cols=249 Identities=35% Similarity=0.579 Sum_probs=225.5
Q ss_pred CCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 98766100004099999999998572576255630888899816999937988299999999999199589995563210
Q 000888 929 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1008 (1237)
Q Consensus 929 ~~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~eLg~~fi~Id~seL~s 1008 (1237)
.+.++|+|++|++++++.|++.+.+|+.+++.|.+.++ +|++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHC
T ss_conf 99998888516999999999999998739999986799-98865888898998889999999998679969993304431
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf 0124408999999999972199179993420100488998--42699998999999882388656776489998328999
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 1086 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~~r~~~--~~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p~ 1086 (1237)
+|.|+++..++.+|..|+..+||||||||+|.+++.|... .......+++++||..++++.. ..+++||||||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCSS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCHH
T ss_conf 4546059999999999997399746300224330355678788871899999999998438787--79979999619815
Q ss_pred CCCHHHHH--HCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98499982--034353699-999889999999998417999904199999975899199999999999977799999999
Q 000888 1087 DLDEAVIR--RLPRRLMVN-LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 1163 (1237)
Q Consensus 1087 ~Ld~aLlr--RFd~~I~v~-~Pd~eeR~~ILk~~l~k~~i~~didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~ 1163 (1237)
.||++++| ||++.|+|+ +|+.++|..||+.++.+..+..++++..||.+|+||+|+||.++|++|++.++++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~----- 397 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK----- 397 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred HCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
T ss_conf 569666368751599981999999999999999855799996358999997779988999999999999999987-----
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCC
Q ss_conf 99999987519999987798887664599999999982-36765
Q 000888 1164 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV-CASVS 1206 (1237)
Q Consensus 1164 ~~~~~~a~ae~~~~~~~~~~~~~r~Vt~eDf~~Al~~v-~pS~s 1206 (1237)
....|+++||+.|+.++ .++..
T Consensus 398 ---------------------~~~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 398 ---------------------NRYVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp ---------------------TCSSBCHHHHHHHHHHHSCSCCC
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf ---------------------99877999999999976176689
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=304.52 Aligned_cols=289 Identities=38% Similarity=0.662 Sum_probs=242.6
Q ss_pred CCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCC
Q ss_conf 87661000040999999999985725762556308888998169999379882999999999991-99589995563210
Q 000888 930 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 1008 (1237)
Q Consensus 930 ~~vtfddI~Gle~iK~~L~e~I~~pl~~~e~f~k~~~~kP~~gILL~GPpGTGKT~LAkAIA~eL-g~~fi~Id~seL~s 1008 (1237)
+.++|++++|++++++.|++.+.+|+.+++.|.. ...|++++||+||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT--TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHC--CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHH
T ss_conf 9999887349899999999999998769897717--88999549998999960999999999980899679987499776
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 01244089999999999721991799934201004889984269999899999988238865677648999832899998
Q 000888 1009 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 1088 (1237)
Q Consensus 1009 ~~~G~se~~I~~lF~~A~k~~PsIIiIDEID~L~~~r~~~~~~~a~~~il~~LL~~Ld~l~~~~~~~VlVIaTTN~p~~L 1088 (1237)
.+.|..+..++.+|..++...|+||||||||.+.+.+... ......++.++|+..++++.. ...+++||++||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCCC
T ss_conf 4311999999999999986299589960478753556665-335899999999999743456-68887999966985658
Q ss_pred CHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 499982034353699999889999999998417999-9041999999758991999999999999777999999999999
Q 000888 1089 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 1167 (1237)
Q Consensus 1089 d~aLlrRFd~~I~v~~Pd~eeR~~ILk~~l~k~~i~-~didl~~LA~~T~G~sg~DL~~Lv~~Aa~~airelle~~~~~~ 1167 (1237)
++++++||+..++++.|+.++|.+||+.++...... .+.++..|++.++||+|+||.++|+.|+..++++.........
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999316768995796999999999999721788899999999999769999999999999999999999986455554
Q ss_pred HHHHHCCC----------CCCC--------------CC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99875199----------9998--------------77-98887664599999999982367654422223568999973
Q 000888 1168 AAAMAEGK----------PAPA--------------LS-GCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELY 1222 (1237)
Q Consensus 1168 ~~a~ae~~----------~~~~--------------~~-~~~~~r~Vt~eDf~~Al~~v~pS~s~~~~~~~~~~~W~di~ 1222 (1237)
. ..... ..++ .. .....++|+++||..|+++++||++.+. +..+.+|++.|
T Consensus 243 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~--~~~~~~~~~~~ 318 (322)
T 1xwi_A 243 V--RGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHD--LLKLKKFTEDF 318 (322)
T ss_dssp E--EEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHH--HHHHHHHHHTT
T ss_pred H--CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHH
T ss_conf 2--1443333100000002556544410000121236500035787089999999986799999999--99999999997
Q ss_pred CCCC
Q ss_conf 4998
Q 000888 1223 GEGG 1226 (1237)
Q Consensus 1223 G~~g 1226 (1237)
|.+|
T Consensus 319 ~~~~ 322 (322)
T 1xwi_A 319 GQEG 322 (322)
T ss_dssp CSCC
T ss_pred CCCC
T ss_conf 4699
Done!