Query 000889
Match_columns 1237
No_of_seqs 901 out of 7655
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 17:25:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000889.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_657-660//hhsearch_pdb/000889hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 787.1 49.9 735 55-831 9-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 598.7 40.5 609 102-799 78-744 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 496.1 46.9 606 105-801 8-627 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 482.7 45.9 589 129-821 7-624 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 477.1 36.8 533 181-801 8-565 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 473.1 43.0 539 181-801 16-565 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 460.2 36.8 533 180-801 14-563 (606)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 451.3 41.4 468 220-776 69-564 (844)
9 4eco_A Uncharacterized protein 1.0 1 1 450.5 24.6 79 57-138 29-117 (636)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 449.0 41.2 519 126-776 33-564 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=787.14 Aligned_cols=735 Identities=41% Similarity=0.738 Sum_probs=640.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCC---CCCCCCCCCCCCCEE
Q ss_conf 99135999999610156789998754556899998303431327998156974289998775---221223589987948
Q 000889 55 GGNEELTILMAFKQSSIGSDPNGYLANWTADALTPCSWQGVSCSLNSHVTSLNLNNSGLSGS---LNLTTLTALPYLEHL 131 (1237)
Q Consensus 55 ~~~~~~~all~~k~~~~~~~~~~~l~sW~~~~~~~c~W~gv~c~~~~~v~~L~L~~~~l~~~---~~~~~l~~l~~L~~L 131 (1237)
+.++|+.||++||+++ .||. .|+||+. +.|||.|.||+|+ .+||+.|+|+++++.|. ++ ..+..+++|+.+
T Consensus 9 ~~~~~~~all~~k~~~--~~~~-~l~~W~~-~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l 82 (768)
T 3rgz_A 9 SLYREIHQLISFKDVL--PDKN-LLPDWSS-NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESL 82 (768)
T ss_dssp CHHHHHHHHHHHHTTC--SCTT-SSTTCCT-TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEE
T ss_pred CCHHHHHHHHHHHHHC--CCCC-CCCCCCC-CCCCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCCC-HHHHCCCCCCCC
T ss_conf 8789999999999667--8962-1468789-9987688413878-9927898778998677557669-657316802246
Q ss_pred ECCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 85489788454123320175566524547733688551000136885556983487667783325995119986899799
Q 000889 132 NLQGNSFSAGDLSTSKTSSCSLVTMDLSSNNITGSLPGRSFLLSCDRLSYVNLSHNSISGGSLHIGPSLLQLDLSGNQIS 211 (1237)
Q Consensus 132 ~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~l~~~~~L~~L~Ls~n~I~ 211 (1237)
+++.+.+.. ++..+..+.+|++|||++|.+.|.++....+..+++|++|++++|.+++..
T Consensus 83 ~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~------------------ 142 (768)
T 3rgz_A 83 FLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG------------------ 142 (768)
T ss_dssp ECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCS------------------
T ss_pred CCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC------------------
T ss_conf 786888678--703324578899898989857870789678727889998989688267747------------------
Q ss_pred CCHHHHCCCCCCCCCCEEECCCCCCCCHHHHH---CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC
Q ss_conf 72122101237888888983379898423210---024987568976455456743201110258972499677886789
Q 000889 212 DSALLTYSLSNCQNLNLLNFSDNKLPGKLNAT---SVNCKSISTIDLSYNLLSGEIPASFVADSSGSLKYLDLSHNNFTG 288 (1237)
Q Consensus 212 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 288 (1237)
....+.++++|++|+|++|.+++..+.. +..+++|++|++++|.+.+..+. ..+++|++|++++|.+++
T Consensus 143 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~ 214 (768)
T 3rgz_A 143 ----KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFST 214 (768)
T ss_dssp ----SCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCS
T ss_pred ----CHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC----CCCCCCCEEECCCCCCCC
T ss_conf ----977856388999898979835885871556643589889898978803465784----547868989892882788
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 76644446779975663157643475561010024640199922774579973333303788869965787477999546
Q 000889 289 KFSNLDFGRCGNLSVITLSQNGLSGTEFPASLKNCQLLETLNMSHNALQGGIPGFLLGSFRNLKQLSLAHNQFAGEIPPE 368 (1237)
Q Consensus 289 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~ 368 (1237)
.++. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.++.. .+++|++|++++|.+++.+|..
T Consensus 215 ~~~~--l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~ 288 (768)
T 3rgz_A 215 GIPF--LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDF 288 (768)
T ss_dssp CCCB--CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCC
T ss_pred CCCC--CCCCCCCCEEECCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCCHH
T ss_conf 7711--12699999897948858781-6577744888898989888665716724---3687898979178557725888
Q ss_pred HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC-
Q ss_conf 7651487967975457678989957346665654203575346765100000235560886137787898786677778-
Q 000889 369 LGQACGTLRELDLSSNRLTGELPSTFASCSSLHSLNLGSNMLSGNFLNTVVSKISSLIYLYVPFNNISGPVPLSLTNCT- 447 (1237)
Q Consensus 369 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~- 447 (1237)
++..+++|++|++++|.+++..|..|+.+++|+.|++++|.+.+..+...+..+++|++|++++|.+++..|..+..++
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred HHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHC
T ss_conf 88446868899896896778423677558776677897885257379788724888878848478437623098986322
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 77599863884755589999999987434510125851110146222266655475256873446789424587675614
Q 000889 448 QLRVLDLSSNGFTGTIPSGFCSPPNFPALEKIVLPNNYLSGTVPLELGSCKNLKTIDLSFNSLAGPVPSEIWSLPNLSDL 527 (1237)
Q Consensus 448 ~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 527 (1237)
+|+.|++++|.+.+.+|..++. ..++.|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTC-STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCCCCCHHHHH-CCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEE
T ss_conf 7719986278747876766653-324776189897784654248777568987989895884668546777449988989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 51225565745654224688855898256532343563212579866899005501124892322834566178157735
Q 000889 528 VMWANNLTGEIPEGICVNGGNLETLILNNNHLTGAIPKSIASCTNMLWVSLSSNQLTGEIPAGIGNLVKLAILQLGNNSL 607 (1237)
Q Consensus 528 ~L~~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 607 (1237)
++++|.+.+.+|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++++.+|.+++.+++|+.|++++|++
T Consensus 448 ~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 448 KLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp ECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCCCCCCCCHHH-CCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
T ss_conf 897881547189788-2877732999019951375887881699899897539951896876885689999898978943
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 347997887889898997789714457894677301654676445753101115798-6435899742114787653579
Q 000889 608 TGQVPQGLGKCRSLVWLDLNSNNLSGPLPSELANQAGVVMPGIVSGKQFAFVRNEGG-TACRGAGGLVEFEGIRPERLEG 686 (1237)
Q Consensus 608 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 686 (1237)
++.+|..++.+++|+.|++++|+++|.+|..++............+..+.+..+... ..|...+.+.++.+..+..+..
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred CCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 37488777088989989898884688279578604212232013454211113444322223322210013556323200
Q ss_pred CCCCCCCCC-CCEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 865467787-4200262023321699333999668968866880002898885999258402332223124555776884
Q 000889 687 FPMVHSCPS-TRIYTGMTMYTFTTNGSLIYLDLSYNSLSGTLPENFGSLNYLQVLNLGHNKLTGHIPDSFGGLKAIGVLD 765 (1237)
Q Consensus 687 ~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 765 (1237)
++....+.. .+.++|.....|....+|++|||++|+++|.+|.+++.+++|+.|+|++|+++|.+|..++.+++|+.||
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 23211001133100462743340335665797858801555877884141578784868803887896784777899898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 778746787877545744346120236623346899987776588765689887799998898999
Q 000889 766 LSHNNFQGSIPGSLGGLSFLSDLDVSNNNLSGIIPSGGQLTTFPASRYENNSGLCGLPLLPCSSGN 831 (1237)
Q Consensus 766 ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~~~~p~~~c~~~~ 831 (1237)
||+|+++|.+|..+..+++|++|++++|+++|.+|..+++.+++...|.||+++||.|+.+|..+.
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCC
T ss_conf 978802386886775788789787968815560899601024897775698321088776788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=598.67 Aligned_cols=609 Identities=34% Similarity=0.534 Sum_probs=513.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH--HHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 15697428999877522122358998794885489788454123--3201755665245477336885510001368855
Q 000889 102 HVTSLNLNNSGLSGSLNLTTLTALPYLEHLNLQGNSFSAGDLST--SKTSSCSLVTMDLSSNNITGSLPGRSFLLSCDRL 179 (1237)
Q Consensus 102 ~v~~L~L~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~~~~L 179 (1237)
++..++++.+++.. ....+..+++|++|||++|.+++ .++. .+..+.+|++|+|++|.+.+..+.. ....+++|
T Consensus 78 ~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L 153 (768)
T 3rgz_A 78 GLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS-GGLKLNSL 153 (768)
T ss_dssp TCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCSSEEECCSSCC-SCCCCTTC
T ss_pred CCCCCCCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCC-CCCCHHHHHCCCCCCEEECCCCCCCCCCCHH-HHCCCCCC
T ss_conf 02246786888678--70332457889989898985787-0789678727889998989688267747977-85638899
Q ss_pred CEEECCCCCCCCCC------CCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCCEE
Q ss_conf 56983487667783------325995119986899799721221012378888889833798984232100249875689
Q 000889 180 SYVNLSHNSISGGS------LHIGPSLLQLDLSGNQISDSALLTYSLSNCQNLNLLNFSDNKLPGKLNATSVNCKSISTI 253 (1237)
Q Consensus 180 ~~L~ls~n~l~~~~------l~~~~~L~~L~Ls~n~I~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 253 (1237)
++|++++|.+++.. +...+.|++|++++|.+.... .+..+++|++|+|++|.+++..+. +..+++|++|
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L 228 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV----DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC----BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred CEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC----CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEE
T ss_conf 98989798358858715566435898898989788034657----845478689898928827887711-1269999989
Q ss_pred ECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCC-CCCCEEEEEC
Q ss_conf 764554567432011102589724996778867897664444677997566315764347556101002-4640199922
Q 000889 254 DLSYNLLSGEIPASFVADSSGSLKYLDLSHNNFTGKFSNLDFGRCGNLSVITLSQNGLSGTEFPASLKN-CQLLETLNMS 332 (1237)
Q Consensus 254 ~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~-l~~L~~L~Ls 332 (1237)
++++|.+.+..+..+ ..+++|++|++++|.+++..+.. .+++|++|++++|.+++. +|..+.. +++|++|+++
T Consensus 229 ~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~-ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 229 DISGNKLSGDFSRAI--STCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp ECCSSCCCSCHHHHT--TTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEES-CCCCSCTTCTTCSEEECC
T ss_pred ECCCCCCCCCCCHHH--HCCCCCCEEECCCCCCCCCCCCC---CCCCCCEEECCCCCCCCC-CCHHHHHHCCCCCEEECC
T ss_conf 794885878165777--44888898989888665716724---368789897917855772-588888446868899896
Q ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCC
Q ss_conf 774579973333303788869965787477999546765148796797545767898995734666-5654203575346
Q 000889 333 HNALQGGIPGFLLGSFRNLKQLSLAHNQFAGEIPPELGQACGTLRELDLSSNRLTGELPSTFASCS-SLHSLNLGSNMLS 411 (1237)
Q Consensus 333 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~ 411 (1237)
+|.+.+.+|.. ++.+++|++|++++|.+++.+|...+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.++
T Consensus 303 ~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 303 GNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp SSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred CCCCCCCCCHH-HHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCC
T ss_conf 89677842367-75587766778978852573797887248888788484784376230989863227719986278747
Q ss_pred CCCCCHHCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECC
Q ss_conf 765100000-2355608861377878987866777787759986388475558999999998743451012585111014
Q 000889 412 GNFLNTVVS-KISSLIYLYVPFNNISGPVPLSLTNCTQLRVLDLSSNGFTGTIPSGFCSPPNFPALEKIVLPNNYLSGTV 490 (1237)
Q Consensus 412 ~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~L~~N~l~~~~ 490 (1237)
+..+..... .+++|++|++++|.+++..|..+.++++|+.|++++|.+.+.+|..+ ..++.|+.|++++|.+.+..
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~ 458 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL---GSLSKLRDLKLWLNMLEGEI 458 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG---GGCTTCCEEECCSSCCCSCC
T ss_pred CCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH---HCCCCCCEEECCCCCCCCCC
T ss_conf 876766653324776189897784654248777568987989895884668546777---44998898989788154718
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 62222666554752568734467894245876756145122556574565422468885589825653234356321257
Q 000889 491 PLELGSCKNLKTIDLSFNSLAGPVPSEIWSLPNLSDLVMWANNLTGEIPEGICVNGGNLETLILNNNHLTGAIPKSIASC 570 (1237)
Q Consensus 491 ~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 570 (1237)
|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..+++|+.|+|++|.+.+.+|..+..+
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH-HCCCCCCEEECCCCCCCCCCCHHHCCC
T ss_conf 9788287773299901995137588788169989989753995189687688-568999989897894337488777088
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCC----------------------------------------------CEEEECC
Q ss_conf 986689900550112489232283456----------------------------------------------6178157
Q 000889 571 TNMLWVSLSSNQLTGEIPAGIGNLVKL----------------------------------------------AILQLGN 604 (1237)
Q Consensus 571 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L----------------------------------------------~~L~L~~ 604 (1237)
++|+.|++++|+++|.+|.++.....+ ..+++..
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 98998989888468827957860421223201345421111344432222332221001355632320023211001133
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 73534799788788989899778971445789467730165467644575310111579864358997421147876535
Q 000889 605 NSLTGQVPQGLGKCRSLVWLDLNSNNLSGPLPSELANQAGVVMPGIVSGKQFAFVRNEGGTACRGAGGLVEFEGIRPERL 684 (1237)
Q Consensus 605 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1237)
|.+.|.+|..++.+++|+.|||++|+++|.+|.+++++.
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~----------------------------------------- 656 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP----------------------------------------- 656 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT-----------------------------------------
T ss_pred CEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC-----------------------------------------
T ss_conf 100462743340335665797858801555877884141-----------------------------------------
Q ss_pred CCCCCCCCCCCCCEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 79865467787420026202332169933399966896886688000289888599925840233222312455577688
Q 000889 685 EGFPMVHSCPSTRIYTGMTMYTFTTNGSLIYLDLSYNSLSGTLPENFGSLNYLQVLNLGHNKLTGHIPDSFGGLKAIGVL 764 (1237)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 764 (1237)
.|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.++.|+.|
T Consensus 657 ---------------------------~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 657 ---------------------------YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp ---------------------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ---------------------------CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEE
T ss_conf ---------------------------57878486880388789678477789989897880238688677578878978
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCEECCCCC-CCCCC
Q ss_conf 477874678787754574434612023662-33468
Q 000889 765 DLSHNNFQGSIPGSLGGLSFLSDLDVSNNN-LSGII 799 (1237)
Q Consensus 765 ~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~-l~~~~ 799 (1237)
|+|+|+++|.+|.. ..+..+....+.+|+ +||.+
T Consensus 710 ~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 710 DLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp ECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred ECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCCCC
T ss_conf 79688155608996-010248977756983210887
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=496.07 Aligned_cols=606 Identities=21% Similarity=0.198 Sum_probs=416.7
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 97428999877522122358998794885489788454123320175566524547733688551000136885556983
Q 000889 105 SLNLNNSGLSGSLNLTTLTALPYLEHLNLQGNSFSAGDLSTSKTSSCSLVTMDLSSNNITGSLPGRSFLLSCDRLSYVNL 184 (1237)
Q Consensus 105 ~L~L~~~~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~~~~L~~L~l 184 (1237)
.+++++++++. ++ ..+ .++++.|+|++|.++... ...+..+.+|++|+|++|.+++..+ ..+..+++|++|++
T Consensus 8 ~~~cs~~~L~~-ip-~~~--~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 8 VADCSHLKLTQ-VP-DDL--PTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEP--ELCQKLPMLKVLNL 80 (680)
T ss_dssp EEECCSSCCSS-CC-SCS--CTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCCCCT--THHHHCTTCCEEEC
T ss_pred EEECCCCCCCC-CC-CCC--CCCCCEEECCCCCCCCCC-HHHHHCCCCCCEEECCCCCCCCCCH--HHHHCCCCCCEEEC
T ss_conf 44877798052-64-124--888768889899778759-7887178767588788996485697--78740667688889
Q ss_pred CCCCCCCCC---CCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 487667783---32599511998689979972122101237888888983379898423210024987568976455456
Q 000889 185 SHNSISGGS---LHIGPSLLQLDLSGNQISDSALLTYSLSNCQNLNLLNFSDNKLPGKLNATSVNCKSISTIDLSYNLLS 261 (1237)
Q Consensus 185 s~n~l~~~~---l~~~~~L~~L~Ls~n~I~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 261 (1237)
++|.++..+ +...++|++|++++|.+... ....+.++++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKI--KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC--CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC--CHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf 99856756854530388889898989966853--9667415678888989899524667211124556777974588436
Q ss_pred CCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHH--CCCCCCEEEEECCCCCCCC
Q ss_conf 74320111025897249967788678976644446779975663157643475561010--0246401999227745799
Q 000889 262 GEIPASFVADSSGSLKYLDLSHNNFTGKFSNLDFGRCGNLSVITLSQNGLSGTEFPASL--KNCQLLETLNMSHNALQGG 339 (1237)
Q Consensus 262 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~ 339 (1237)
+..+..+....+.+|++|++++|.+++. ....+..+++|+.|++.++.+......... ...++|+.|++++|.+.+.
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCCCCCB-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred CCCHHHHHCCCCCCCCEEECCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 5297886244666321798889825655-815553223445543056646805677787775315100887457743646
Q ss_pred CCHHHHCCCC--CCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCH
Q ss_conf 7333330378--88699657874779995467651487967975457678989957346665654203575346765100
Q 000889 340 IPGFLLGSFR--NLKQLSLAHNQFAGEIPPELGQACGTLRELDLSSNRLTGELPSTFASCSSLHSLNLGSNMLSGNFLNT 417 (1237)
Q Consensus 340 ~~~~~~~~l~--~L~~L~L~~n~l~~~i~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 417 (1237)
.+.. +..++ +|+.|++++|.+++ +++..+..+++|++|++++|.+.+..+..|..+++|+.|++++|........
T Consensus 238 ~~~~-~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~- 314 (680)
T 1ziw_A 238 SNTT-FLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL- 314 (680)
T ss_dssp CTTT-TGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----
T ss_pred CHHH-HHCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCC-
T ss_conf 8667-514676778887787887675-6802116741056855778856765865626788855773633132133333-
Q ss_pred HCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEE--ECCCCCCC
Q ss_conf 0002355608861377878987866777787759986388475558999999998743451012585111--01462222
Q 000889 418 VVSKISSLIYLYVPFNNISGPVPLSLTNCTQLRVLDLSSNGFTGTIPSGFCSPPNFPALEKIVLPNNYLS--GTVPLELG 495 (1237)
Q Consensus 418 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~l~ 495 (1237)
+.+.......|..+++|+.|++++|.+.+..+..| ..+++|+.|++++|.+. ......+.
T Consensus 315 ---------------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~~~~~~l~~~~f~ 376 (680)
T 1ziw_A 315 ---------------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF---TGLINLKYLSLSNSFTSLRTLTNETFV 376 (680)
T ss_dssp -----------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT---TTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred ---------------CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHH---CCCCCCCEEECCCCCHHHHHCCHHHHC
T ss_conf ---------------55454386562467778888798982687885574---065687289887980144323532202
Q ss_pred CC--CCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 66--6554752568734467894245876756145122556574565422468885589825653234356321257986
Q 000889 496 SC--KNLKTIDLSFNSLAGPVPSEIWSLPNLSDLVMWANNLTGEIPEGICVNGGNLETLILNNNHLTGAIPKSIASCTNM 573 (1237)
Q Consensus 496 ~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 573 (1237)
.+ ++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+..|..+++|
T Consensus 377 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 456 (680)
T 1ziw_A 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456 (680)
T ss_dssp GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred CCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCC
T ss_conf 45568676688999977767754420778888886778757543575532575461278448997542276455007543
Q ss_pred CEEEEECCCCC--CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 68990055011--2489232283456617815773534799788788989899778971445789467730165467644
Q 000889 574 LWVSLSSNQLT--GEIPAGIGNLVKLAILQLGNNSLTGQVPQGLGKCRSLVWLDLNSNNLSGPLPSELANQAGVVMPGIV 651 (1237)
Q Consensus 574 ~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~ 651 (1237)
+.|++++|.+. +.+|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+...
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------- 527 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG--------- 527 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS---------
T ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCC---------
T ss_conf 10110146442256677645557878999899998776794463455346888588997300000004677---------
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 57531011157986435899742114787653579865467787420026202332169933399966896886688000
Q 000889 652 SGKQFAFVRNEGGTACRGAGGLVEFEGIRPERLEGFPMVHSCPSTRIYTGMTMYTFTTNGSLIYLDLSYNSLSGTLPENF 731 (1237)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~ 731 (1237)
....|....+|+.|+|++|.++...+..|
T Consensus 528 ---------------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 528 ---------------------------------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp ---------------------------------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ---------------------------------------------------CCHHHCCCCCCCEEECCCCCCCCCCHHHC
T ss_conf ---------------------------------------------------41423379988888899997887797773
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCC
Q ss_conf 2898885999258402332223124555776884778746787877545-744346120236623346899
Q 000889 732 GSLNYLQVLNLGHNKLTGHIPDSFGGLKAIGVLDLSHNNFQGSIPGSLG-GLSFLSDLDVSNNNLSGIIPS 801 (1237)
Q Consensus 732 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~p~ 801 (1237)
..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+++++|++.+..+.
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 46667522389999777679768378988888989999687059668301146657798318970257766
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=482.66 Aligned_cols=589 Identities=22% Similarity=0.232 Sum_probs=400.1
Q ss_pred CEEECCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 94885489788454123320175566524547733688551000136885556983487667783325995119986899
Q 000889 129 EHLNLQGNSFSAGDLSTSKTSSCSLVTMDLSSNNITGSLPGRSFLLSCDRLSYVNLSHNSISGGSLHIGPSLLQLDLSGN 208 (1237)
Q Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~l~~~~~L~~L~Ls~n 208 (1237)
+.+++++++++..+ ... ..++++|+|++|.+++..+ ..+..+++|++|++++|.++
T Consensus 7 ~~~~cs~~~L~~ip--~~~--~~~l~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~------------------ 62 (680)
T 1ziw_A 7 EVADCSHLKLTQVP--DDL--PTNITVLNLTHNQLRRLPA--ANFTRYSQLTSLDVGFNTIS------------------ 62 (680)
T ss_dssp SEEECCSSCCSSCC--SCS--CTTCSEEECCSSCCCCCCG--GGGGGGTTCSEEECCSSCCC------------------
T ss_pred CEEECCCCCCCCCC--CCC--CCCCCEEECCCCCCCCCCH--HHHHCCCCCCEEECCCCCCC------------------
T ss_conf 74487779805264--124--8887688898997787597--88717876758878899648------------------
Q ss_pred CCCCCHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC
Q ss_conf 79972122101237888888983379898423210024987568976455456743201110258972499677886789
Q 000889 209 QISDSALLTYSLSNCQNLNLLNFSDNKLPGKLNATSVNCKSISTIDLSYNLLSGEIPASFVADSSGSLKYLDLSHNNFTG 288 (1237)
Q Consensus 209 ~I~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 288 (1237)
.. ...++.++++|++|+|++|.++.+....+..+++|++|+|++|.+.+..+..+ ..+++|++|++++|.+++
T Consensus 63 ---~~--~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~ 135 (680)
T 1ziw_A 63 ---KL--EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF--VKQKNLITLDLSHNGLSS 135 (680)
T ss_dssp ---CC--CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTT--TTCTTCCEEECCSSCCSC
T ss_pred ---CC--CHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHC--CCCCCCCEEECCCCCCCC
T ss_conf ---56--97787406676888899985675685453038888989898996685396674--156788889898995246
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHC--CCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC
Q ss_conf 766444467799756631576434755610100--246401999227745799733333037888699657874779995
Q 000889 289 KFSNLDFGRCGNLSVITLSQNGLSGTEFPASLK--NCQLLETLNMSHNALQGGIPGFLLGSFRNLKQLSLAHNQFAGEIP 366 (1237)
Q Consensus 289 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~i~ 366 (1237)
.. ...+..+++|++|++++|.+++.. +..+. .+++|+.|++++|.+.+..+. .+..+.+|+.|++.++.+.+...
T Consensus 136 ~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 136 TK-LGTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp CC-CCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHH
T ss_pred CC-CHHHCCCCCCCEEECCCCCCCCCC-HHHHHCCCCCCCCEEECCCCCCCCCCHH-HHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 67-211124556777974588436529-7886244666321798889825655815-55322344554305664680567
Q ss_pred HHHHH--HCCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 46765--1487967975457678989957346665--6542035753467651000002355608861377878987866
Q 000889 367 PELGQ--ACGTLRELDLSSNRLTGELPSTFASCSS--LHSLNLGSNMLSGNFLNTVVSKISSLIYLYVPFNNISGPVPLS 442 (1237)
Q Consensus 367 ~~l~~--~~~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 442 (1237)
..+.. ..++|+.|++++|.+.+..+..|..+.. |+.|++++|.+++ ..+..+..+++|++|++++|.+.+..+..
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTT
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 77877753151008874577436468667514676778887787887675-68021167410568557788567658656
Q ss_pred CCCCCCCCEEECCCCCCCCC-----CCC-CCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCEECCCCCCCCC--CC
Q ss_conf 77778775998638847555-----899-99999987434510125851110146222266655475256873446--78
Q 000889 443 LTNCTQLRVLDLSSNGFTGT-----IPS-GFCSPPNFPALEKIVLPNNYLSGTVPLELGSCKNLKTIDLSFNSLAG--PV 514 (1237)
Q Consensus 443 l~~l~~L~~L~Ls~N~l~~~-----~p~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~ 514 (1237)
|..+++|+.|++++|...+. +|. .-.....++.|+.|++++|.+.+..+..+.++++|++|++++|.+.. ..
T Consensus 292 ~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred HCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCC
T ss_conf 26788855773633132133333554543865624677788887989826878855740656872898879801443235
Q ss_pred CCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 9424587--6756145122556574565422468885589825653234356-321257986689900550112489232
Q 000889 515 PSEIWSL--PNLSDLVMWANNLTGEIPEGICVNGGNLETLILNNNHLTGAIP-KSIASCTNMLWVSLSSNQLTGEIPAGI 591 (1237)
Q Consensus 515 p~~~~~l--~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 591 (1237)
...+..+ ++|+.|++++|++. .++...+..+++|+.|++++|.+.+.+| ..+.++++|+.|++++|++.+..+..|
T Consensus 372 ~~~f~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 450 (680)
T 1ziw_A 372 NETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450 (680)
T ss_dssp TTTTGGGTTSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT
T ss_pred HHHHCCCCCCCCCEEECCCCCCC-EECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHH
T ss_conf 32202455686766889999777-67754420778888886778757543575532575461278448997542276455
Q ss_pred CCCCCCCEEEECCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 28345661781577353--4799788788989899778971445789467730165467644575310111579864358
Q 000889 592 GNLVKLAILQLGNNSLT--GQVPQGLGKCRSLVWLDLNSNNLSGPLPSELANQAGVVMPGIVSGKQFAFVRNEGGTACRG 669 (1237)
Q Consensus 592 ~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1237)
..+++|+.|++++|.+. +.+|..|..+++|+.|++++|++++..|..+.
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~----------------------------- 501 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE----------------------------- 501 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT-----------------------------
T ss_pred HCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHC-----------------------------
T ss_conf 007543101101464422566776455578789998999987767944634-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCEEEEECCCCCCCCCCC--------CCCCCCCCCCEEE
Q ss_conf 99742114787653579865467787420026202332169933399966896886688--------0002898885999
Q 000889 670 AGGLVEFEGIRPERLEGFPMVHSCPSTRIYTGMTMYTFTTNGSLIYLDLSYNSLSGTLP--------ENFGSLNYLQVLN 741 (1237)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~ 741 (1237)
...+|++|++++|.+++..+ ..+..+++|+.|+
T Consensus 502 ---------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 502 ---------------------------------------GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp ---------------------------------------TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred ---------------------------------------CCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEE
T ss_conf ---------------------------------------55346888588997300000004677414233799888888
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCC
Q ss_conf 2584023322231245557768847787467878775457443461202366233468999-8-7776588765689887
Q 000889 742 LGHNKLTGHIPDSFGGLKAIGVLDLSHNNFQGSIPGSLGGLSFLSDLDVSNNNLSGIIPSG-G-QLTTFPASRYENNSGL 819 (1237)
Q Consensus 742 L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~-~~~~~~~~~~~~n~~~ 819 (1237)
|++|+++...+..|.++++|+.||+++|++++..|..+..+++|+.|++++|++++.+|.. + .+.++..+.+.+|++.
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCC
T ss_conf 99997887797773466675223899997776797683789888889899996870596683011466577983189702
Q ss_pred CC
Q ss_conf 79
Q 000889 820 CG 821 (1237)
Q Consensus 820 ~~ 821 (1237)
|.
T Consensus 623 c~ 624 (680)
T 1ziw_A 623 CT 624 (680)
T ss_dssp BC
T ss_pred CC
T ss_conf 57
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=477.07 Aligned_cols=533 Identities=22% Similarity=0.191 Sum_probs=345.4
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCC-CHHHHHCCCCCCCCEEECCCCC
Q ss_conf 698348766778332599511998689979972122101237888888983379898-4232100249875689764554
Q 000889 181 YVNLSHNSISGGSLHIGPSLLQLDLSGNQISDSALLTYSLSNCQNLNLLNFSDNKLP-GKLNATSVNCKSISTIDLSYNL 259 (1237)
Q Consensus 181 ~L~ls~n~l~~~~l~~~~~L~~L~Ls~n~I~~~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~Ls~n~ 259 (1237)
..++++++++..+. .++.+++|+|++|.|+.. ....+.++++|++|+|++|... .+.+..+.++++|++|+|++|.
T Consensus 8 ~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEESCCCSSCCCS-SCTTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEECCCCCCCCCCC-CCCCCCEEECCCCCCCCC--CHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 89823799777898-999868888877867832--966776621370886789977444197785378778888798995
Q ss_pred CCCCCCHHHHHCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCC
Q ss_conf 56743201110258972499677886789766-44446779975663157643475561010024640199922774579
Q 000889 260 LSGEIPASFVADSSGSLKYLDLSHNNFTGKFS-NLDFGRCGNLSVITLSQNGLSGTEFPASLKNCQLLETLNMSHNALQG 338 (1237)
Q Consensus 260 l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 338 (1237)
+.+..|..+ ..+.+|++|+|++|.+++... ...|..+++|++|+|++|.+++...+..+.++++|++|++++|.+.+
T Consensus 85 l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 85 IYFLHPDAF--QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCEECTTSS--CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CCCCCHHHC--CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCE
T ss_conf 853197671--578665870176788973404676455667999888987864232566557638898989898984776
Q ss_pred CCCHHHHCCC--CCCCEEECCCCCCCCCCCHHHHHHC-----CCCCEEECCCCCCCCCCCCCCCCC---CCCCEEECCCC
Q ss_conf 9733333037--8886996578747799954676514-----879679754576789899573466---65654203575
Q 000889 339 GIPGFLLGSF--RNLKQLSLAHNQFAGEIPPELGQAC-----GTLRELDLSSNRLTGELPSTFASC---SSLHSLNLGSN 408 (1237)
Q Consensus 339 ~~~~~~~~~l--~~L~~L~L~~n~l~~~i~~~l~~~~-----~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~L~~N 408 (1237)
..+.. +..+ ++|+.|++++|.+.+..+..+.... ..|+.|++++|.+.+..+..+... ..++.+.++.+
T Consensus 163 ~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred ECHHH-CCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 67887-53556775035789788666554553322377223574007965788686567788876427441001121212
Q ss_pred ---------CCCCCCCCHHCCCC--CCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---------34676510000023--5560886137787898786677778775998638847555899999999874345
Q 000889 409 ---------MLSGNFLNTVVSKI--SSLIYLYVPFNNISGPVPLSLTNCTQLRVLDLSSNGFTGTIPSGFCSPPNFPALE 477 (1237)
Q Consensus 409 ---------~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~ 477 (1237)
.+.+ .....+.++ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..| ..+++|+
T Consensus 242 ~~~~~~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~ 317 (844)
T 3j0a_A 242 IMGAGFGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF---YGLDNLQ 317 (844)
T ss_dssp CCBCSSSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT---TTCSSCC
T ss_pred CCCCCCCCCCCCC-CCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHH---CCCCCCC
T ss_conf 2346644456688-98556525554786189897994551586345258999999897981898796883---6888999
Q ss_pred EECCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 10125851110146222266655475256873446789424587675614512255657456542246888558982565
Q 000889 478 KIVLPNNYLSGTVPLELGSCKNLKTIDLSFNSLAGPVPSEIWSLPNLSDLVMWANNLTGEIPEGICVNGGNLETLILNNN 557 (1237)
Q Consensus 478 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~Ls~N 557 (1237)
.|++++|.+.+..+..+..+++|+.|++++|.++...+..|..+++|+.|++++|.+. .++. +++|+.|++++|
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~L~l~~N 391 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPDIFLSGN 391 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSEEEEESC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCC-----CCCCCHHCCCCC
T ss_conf 8989899788518788468999998989899877628666137888999889899778-6168-----898232005899
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC
Q ss_conf 323435632125798668990055011248-92322834566178157735347997-8878898989977897144578
Q 000889 558 HLTGAIPKSIASCTNMLWVSLSSNQLTGEI-PAGIGNLVKLAILQLGNNSLTGQVPQ-GLGKCRSLVWLDLNSNNLSGPL 635 (1237)
Q Consensus 558 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~ 635 (1237)
.+. .+|.. ...++.|++++|++++.. +..+..+++|+.|+|++|++++..+. .+..+++|+.|++++|.+++..
T Consensus 392 ~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 467 (844)
T 3j0a_A 392 KLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467 (844)
T ss_dssp CCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred CCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 723-14554---55431221456753457556665127766666677871255554333566873100247777364410
Q ss_pred CHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCEEE
Q ss_conf 94677301654676445753101115798643589974211478765357986546778742002620233216993339
Q 000889 636 PSELANQAGVVMPGIVSGKQFAFVRNEGGTACRGAGGLVEFEGIRPERLEGFPMVHSCPSTRIYTGMTMYTFTTNGSLIY 715 (1237)
Q Consensus 636 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 715 (1237)
+..+ ....|..+.+|+.
T Consensus 468 ~~~~---------------------------------------------------------------~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 468 ETEL---------------------------------------------------------------CWDVFEGLSHLQV 484 (844)
T ss_dssp CSCC---------------------------------------------------------------CSSCSSCBCCEEC
T ss_pred CCCC---------------------------------------------------------------CHHHHCCCCCCCE
T ss_conf 1355---------------------------------------------------------------3555447553657
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 99668968866880002898885999258402332223124555776884778746787877545744346120236623
Q 000889 716 LDLSYNSLSGTLPENFGSLNYLQVLNLGHNKLTGHIPDSFGGLKAIGVLDLSHNNFQGSIPGSLGGLSFLSDLDVSNNNL 795 (1237)
Q Consensus 716 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l 795 (1237)
|+|++|.+++.+|..|..+++|+.|+|++|++++..|..+. ++|+.||+++|++++..|..+. +|+.+++++|++
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~ 559 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKF 559 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECC
T ss_pred EECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCC
T ss_conf 77889856553955704501221569999978745710110--0455888988847888966837---768899319970
Q ss_pred CCCCCC
Q ss_conf 346899
Q 000889 796 SGIIPS 801 (1237)
Q Consensus 796 ~~~~p~ 801 (1237)
.+..+.
T Consensus 560 ~C~c~~ 565 (844)
T 3j0a_A 560 ICECEL 565 (844)
T ss_dssp CCSSSC
T ss_pred CCCCCC
T ss_conf 253661
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=473.12 Aligned_cols=539 Identities=19% Similarity=0.209 Sum_probs=365.8
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 69834876677833259951199868997997212210123788888898337989842321002498756897645545
Q 000889 181 YVNLSHNSISGGSLHIGPSLLQLDLSGNQISDSALLTYSLSNCQNLNLLNFSDNKLPGKLNATSVNCKSISTIDLSYNLL 260 (1237)
Q Consensus 181 ~L~ls~n~l~~~~l~~~~~L~~L~Ls~n~I~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 260 (1237)
.+++++..++..+...+..+++|+|++|.|+.. .+..+.++++|++|+|++|.++++.+..+..+++|++|+|++|.+
T Consensus 16 ~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLPNSTECLEFSFNVLPTI--QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTCCCSEE--CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 377777980628677898675898158734717--966725676652897889835524851136843367644889856
Q ss_pred CCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCC
Q ss_conf 67432011102589724996778867897664444677997566315764347556101002464019992277457997
Q 000889 261 SGEIPASFVADSSGSLKYLDLSHNNFTGKFSNLDFGRCGNLSVITLSQNGLSGTEFPASLKNCQLLETLNMSHNALQGGI 340 (1237)
Q Consensus 261 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 340 (1237)
.+..+..+ ..+++|++|++++|.+++ .....+..+++|++|++++|.++....+... .+++|++|++++|.+.+..
T Consensus 94 ~~~~~~~~--~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 94 IFMAETAL--SGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp SEECTTTT--SSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEEC
T ss_pred CCCCHHHH--CCCCCCCEEECCCCCCCC-CCCCHHCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCC
T ss_conf 54586552--344215376521267665-7810122378223898879834114765456-8765687776568445549
Q ss_pred CHHHHCCCCCCC--EEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC----CCC
Q ss_conf 333330378886--99657874779995467651487967975457678989957346665654203575346----765
Q 000889 341 PGFLLGSFRNLK--QLSLAHNQFAGEIPPELGQACGTLRELDLSSNRLTGELPSTFASCSSLHSLNLGSNMLS----GNF 414 (1237)
Q Consensus 341 ~~~~~~~l~~L~--~L~L~~n~l~~~i~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~----~~~ 414 (1237)
+ ..++.+++|+ .|++++|.+. .+++..+.. ..|+.|++++|.. .+..+..+.++....+....+. ...
T Consensus 170 ~-~~~~~l~~L~~l~L~l~~n~l~-~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 170 K-EDMSSLQQATNLSLNLNGNDIA-GIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp H-HHHHTTTTCCSEEEECTTCCCC-EECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred H-HHHHHHCCCCEEEEECCCCCCC-CCCHHHHHH-CCCCCCCCCCCHH---HHHHHHHCCCCCHHHEECHHHCCCCCCCC
T ss_conf 6-5633221564038966798147-548667300-1001355677266---77776513356442200201102641226
Q ss_pred CCHHCCCCC--CCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCC
Q ss_conf 100000235--560886137787898786677778775998638847555899999999874345101258511101462
Q 000889 415 LNTVVSKIS--SLIYLYVPFNNISGPVPLSLTNCTQLRVLDLSSNGFTGTIPSGFCSPPNFPALEKIVLPNNYLSGTVPL 492 (1237)
Q Consensus 415 ~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 492 (1237)
....+..+. +|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+ ..+++|+.|++++|.+.+..+.
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l---~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL---VGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC---CSCTTCCEEECTTCCCSBGGGG
T ss_pred CHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHH---CCCCCCCEEECCCCCCCCCCHH
T ss_conf 866743032075059994457658557777445667888956288267-778214---1654688897716876867602
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 222666554752568734467894-24587675614512255657456-5422468885589825653234356321257
Q 000889 493 ELGSCKNLKTIDLSFNSLAGPVPS-EIWSLPNLSDLVMWANNLTGEIP-EGICVNGGNLETLILNNNHLTGAIPKSIASC 570 (1237)
Q Consensus 493 ~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~ip-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 570 (1237)
.+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+.+... ...+..+++|+.|++++|.+.+..|..+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 33015768988898997444346245506675898878899666456752210567888989898996775788873477
Q ss_pred CCCCEEEEECCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 98668990055011248923-22834566178157735347997887889898997789714457894677301654676
Q 000889 571 TNMLWVSLSSNQLTGEIPAG-IGNLVKLAILQLGNNSLTGQVPQGLGKCRSLVWLDLNSNNLSGPLPSELANQAGVVMPG 649 (1237)
Q Consensus 571 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~ 649 (1237)
++|+.|++++|++.+..|.. +..+++|+.|++++|.+.+..|..++.+++|+.|++++|++.+..+..
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------- 468 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK----------- 468 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS-----------
T ss_pred CCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCC-----------
T ss_conf 457768788886777565212417655888989898557768778737887888989899888543454-----------
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCEEEEECCCCCCCCCCCC
Q ss_conf 44575310111579864358997421147876535798654677874200262023321699333999668968866880
Q 000889 650 IVSGKQFAFVRNEGGTACRGAGGLVEFEGIRPERLEGFPMVHSCPSTRIYTGMTMYTFTTNGSLIYLDLSYNSLSGTLPE 729 (1237)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 729 (1237)
...+..+.+|+.|++++|.+++..|.
T Consensus 469 ------------------------------------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 469 ------------------------------------------------------TNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp ------------------------------------------------------SCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred ------------------------------------------------------CHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf ------------------------------------------------------31240488766887999966706864
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 002898885999258402332223124555776884778746787877545744346120236623346899
Q 000889 730 NFGSLNYLQVLNLGHNKLTGHIPDSFGGLKAIGVLDLSHNNFQGSIPGSLGGLSFLSDLDVSNNNLSGIIPS 801 (1237)
Q Consensus 730 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 801 (1237)
.|+.+++|+.|+|++|++++..|..+..++.| .|++++|++++..|..+..+++|+.+++++|++.+..+.
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 63265678889898980686896684756651-898768941426876625677878896779986166775
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=460.23 Aligned_cols=533 Identities=20% Similarity=0.197 Sum_probs=375.7
Q ss_pred CEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCCEEECCCCC
Q ss_conf 56983487667783325995119986899799721221012378888889833798984232100249875689764554
Q 000889 180 SYVNLSHNSISGGSLHIGPSLLQLDLSGNQISDSALLTYSLSNCQNLNLLNFSDNKLPGKLNATSVNCKSISTIDLSYNL 259 (1237)
Q Consensus 180 ~~L~ls~n~l~~~~l~~~~~L~~L~Ls~n~I~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 259 (1237)
..++|++++++..+....+.+++|+|++|.|+.. ....+.++++|++|++++|.++++.+..+.++++|++|+|++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKIL--KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCEECCCCCCCCCCCCCCCCCCEEECCCCCCCEE--CHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCC
T ss_conf 7057468884518988888767887888975773--75455577667488688773664397773060106886787985
Q ss_pred CCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 56743201110258972499677886789766444467799756631576434755610100246401999227745799
Q 000889 260 LSGEIPASFVADSSGSLKYLDLSHNNFTGKFSNLDFGRCGNLSVITLSQNGLSGTEFPASLKNCQLLETLNMSHNALQGG 339 (1237)
Q Consensus 260 l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 339 (1237)
+.+..|..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.++...+|..+.++++|++|++++|.+++.
T Consensus 92 l~~~~p~~~--~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 92 IQSFSPGSF--SGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCTTSS--TTCTTCCEEECTTSCCCCS-SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCCCCHHHC--CCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEEC
T ss_conf 630485220--7865378887037755544-5113489887798968788523253068673267777887668853105
Q ss_pred CCHHHHCCCCCC----CEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCC-
Q ss_conf 733333037888----699657874779995467651487967975457678-98995734666565420357534676-
Q 000889 340 IPGFLLGSFRNL----KQLSLAHNQFAGEIPPELGQACGTLRELDLSSNRLT-GELPSTFASCSSLHSLNLGSNMLSGN- 413 (1237)
Q Consensus 340 ~~~~~~~~l~~L----~~L~L~~n~l~~~i~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~- 413 (1237)
.+. .++.+.+| ..|++++|.++ .++...+.. .+|+.|++++|.+. ...+..+.+++.|+.+++..+.+...
T Consensus 169 ~~~-~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 169 TVN-DLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp CTT-TTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred CHH-HHHHHHCCCCCCCEEECCCCCCC-EECCCCCCC-CEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 733-41212034200243004689753-257110567-604335246785616677888602665652314111103677
Q ss_pred ----CCCHHCCCCC--CCEEEEC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEE
Q ss_conf ----5100000235--5608861-37787898786677778775998638847555899999999874345101258511
Q 000889 414 ----FLNTVVSKIS--SLIYLYV-PFNNISGPVPLSLTNCTQLRVLDLSSNGFTGTIPSGFCSPPNFPALEKIVLPNNYL 486 (1237)
Q Consensus 414 ----~~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~L~~N~l 486 (1237)
.....+..+. .++.+.+ ..|.+.+..+. +..+++|+.|++++|.+. .+| .+ ..++.|+.|++++|.+
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l---~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DV---PKHFKWQSLSIIRCQL 319 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CC---CTTCCCSEEEEESCCC
T ss_pred CCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCH-HHH-HC---CCCCCCCEEECCCCCC
T ss_conf 41026817766665434745012366555543222-354887898771476604-435-43---3401177897646667
Q ss_pred EECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 1014622226665547525687344678942458767561451225565745-654224688855898256532343563
Q 000889 487 SGTVPLELGSCKNLKTIDLSFNSLAGPVPSEIWSLPNLSDLVMWANNLTGEI-PEGICVNGGNLETLILNNNHLTGAIPK 565 (1237)
Q Consensus 487 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (1237)
. .+| .+ .+++|+.|++++|...+.. .+..+++|+.|++++|.+.+.. ....+..+++|++|++++|.+. .+|.
T Consensus 320 ~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~ 393 (606)
T 3vq2_A 320 K-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSA 393 (606)
T ss_dssp S-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECC
T ss_pred C-CCC-CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-CCHH
T ss_conf 6-546-67-8875564454478685310--002489888797758736877520122146775548678899530-0055
Q ss_pred CCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCHHHHHHC
Q ss_conf 21257986689900550112489-2322834566178157735347997887889898997789714457-894677301
Q 000889 566 SIASCTNMLWVSLSSNQLTGEIP-AGIGNLVKLAILQLGNNSLTGQVPQGLGKCRSLVWLDLNSNNLSGP-LPSELANQA 643 (1237)
Q Consensus 566 ~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~ 643 (1237)
.+..+++|+.|++++|++.+..| ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+. +|..+.
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--- 470 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA--- 470 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT---
T ss_pred HCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHC---
T ss_conf 40688888965898870587537645646213788989689787433555347787898989898379854677604---
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCEEEEECCCCCC
Q ss_conf 65467644575310111579864358997421147876535798654677874200262023321699333999668968
Q 000889 644 GVVMPGIVSGKQFAFVRNEGGTACRGAGGLVEFEGIRPERLEGFPMVHSCPSTRIYTGMTMYTFTTNGSLIYLDLSYNSL 723 (1237)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 723 (1237)
.+.+|+.|++++|.+
T Consensus 471 -----------------------------------------------------------------~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 471 -----------------------------------------------------------------NTTNLTFLDLSKCQL 485 (606)
T ss_dssp -----------------------------------------------------------------TCTTCCEEECTTSCC
T ss_pred -----------------------------------------------------------------CCCCCCEEECCCCCC
T ss_conf -----------------------------------------------------------------578899898988857
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCEECCCCCCCCCCCC
Q ss_conf 866880002898885999258402332223124555776884778746787877545744-346120236623346899
Q 000889 724 SGTLPENFGSLNYLQVLNLGHNKLTGHIPDSFGGLKAIGVLDLSHNNFQGSIPGSLGGLS-FLSDLDVSNNNLSGIIPS 801 (1237)
Q Consensus 724 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~~~~p~ 801 (1237)
++..|..++.+++|+.|++++|++++..|..|..+++|+.||+++|+++ .+|..+..++ +|+.+++++|++.+..+.
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 7648656154646898989899578748777068876898889898376-66876752102174887628986647764
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=451.27 Aligned_cols=468 Identities=22% Similarity=0.252 Sum_probs=293.8
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 23788888898337989842321002498756897645545674320111025897249967788678976644446779
Q 000889 220 LSNCQNLNLLNFSDNKLPGKLNATSVNCKSISTIDLSYNLLSGEIPASFVADSSGSLKYLDLSHNNFTGKFSNLDFGRCG 299 (1237)
Q Consensus 220 l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~ 299 (1237)
+.++++|++|+|++|.+++..+..+..+++|++|+|++|.+.+..+.......+++|++|+|++|.+++......|+.++
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCC
T ss_conf 53787788887989958531976715786658701767889734046764556679998889878642325665576388
Q ss_pred CCCEEECCCCCCCCCCCCHHHCCC--CCCEEEEECCCCCCCCCCHHHHCCCC------CCCEEECCCCCCCCCCCHHHHH
Q ss_conf 975663157643475561010024--64019992277457997333330378------8869965787477999546765
Q 000889 300 NLSVITLSQNGLSGTEFPASLKNC--QLLETLNMSHNALQGGIPGFLLGSFR------NLKQLSLAHNQFAGEIPPELGQ 371 (1237)
Q Consensus 300 ~L~~L~L~~n~l~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~------~L~~L~L~~n~l~~~i~~~l~~ 371 (1237)
+|++|++++|.+++. .+..+..+ ++|+.|+++.|.+.+..+.. +..++ .|+.|++++|.+++.++..+..
T Consensus 149 ~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp SCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred CCCEEECCCCCCCEE-CHHHCCCCCCCCCCEEECCCCCCCCCCCCC-HHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 989898989847766-788753556775035789788666554553-322377223574007965788686567788876
Q ss_pred HC--CCCCEEECCCC---------CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 14--87967975457---------6789899573466--65654203575346765100000235560886137787898
Q 000889 372 AC--GTLRELDLSSN---------RLTGELPSTFASC--SSLHSLNLGSNMLSGNFLNTVVSKISSLIYLYVPFNNISGP 438 (1237)
Q Consensus 372 ~~--~~L~~L~Ls~N---------~l~~~~~~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 438 (1237)
.. ..+..+.++.+ .+.+.....|..+ ++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.+.
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred HCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCC-CCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 427441001121212234664445668898556525554786189897994551-5863452589999998979818987
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 78667777877599863884755589999999987434510125851110146222266655475256873446789424
Q 000889 439 VPLSLTNCTQLRVLDLSSNGFTGTIPSGFCSPPNFPALEKIVLPNNYLSGTVPLELGSCKNLKTIDLSFNSLAGPVPSEI 518 (1237)
Q Consensus 439 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~ 518 (1237)
.+..|..+++|+.|++++|.+.+..+..| ..++.|+.|++++|.+....+..+..+++|+.|++++|.+++ +
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i 377 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNF---YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----I 377 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCSC---SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----C
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHH---CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-----C
T ss_conf 96883688899989898997885187884---689999989898998776286661378889998898997786-----1
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCC
Q ss_conf 5876756145122556574565422468885589825653234356-3212579866899005501124892-3228345
Q 000889 519 WSLPNLSDLVMWANNLTGEIPEGICVNGGNLETLILNNNHLTGAIP-KSIASCTNMLWVSLSSNQLTGEIPA-GIGNLVK 596 (1237)
Q Consensus 519 ~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~ 596 (1237)
..+++|+.|++++|++. .+|.. ..+++.|++++|.+.+... ..+..+++|+.|+|++|++++..+. .+..+++
T Consensus 378 ~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 452 (844)
T 3j0a_A 378 HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452 (844)
T ss_dssp SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT
T ss_pred CCCCCCCHHCCCCCCCC-CCCCC----CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 68898232005899723-14554----55431221456753457556665127766666677871255554333566873
Q ss_pred CCEEEECCCCCC-----CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 661781577353-----479978878898989977897144578946773016546764457531011157986435899
Q 000889 597 LAILQLGNNSLT-----GQVPQGLGKCRSLVWLDLNSNNLSGPLPSELANQAGVVMPGIVSGKQFAFVRNEGGTACRGAG 671 (1237)
Q Consensus 597 L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1237)
|+.|++++|.++ +..+..|..+++|+.|+|++|++++..|..+.
T Consensus 453 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------- 501 (844)
T 3j0a_A 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS------------------------------- 501 (844)
T ss_dssp CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS-------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCC-------------------------------
T ss_conf 1002477773644101355355544755365777889856553955704-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 74211478765357986546778742002620233216993339996689688668800028988859992584023322
Q 000889 672 GLVEFEGIRPERLEGFPMVHSCPSTRIYTGMTMYTFTTNGSLIYLDLSYNSLSGTLPENFGSLNYLQVLNLGHNKLTGHI 751 (1237)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 751 (1237)
.+.+|+.|+|++|++++..|..+. ++|+.|+|++|++++..
T Consensus 502 -------------------------------------~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 502 -------------------------------------HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN 542 (844)
T ss_dssp -------------------------------------SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred -------------------------------------CHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCC
T ss_conf -------------------------------------501221569999978745710110--04558889888478889
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 2312455577688477874678787
Q 000889 752 PDSFGGLKAIGVLDLSHNNFQGSIP 776 (1237)
Q Consensus 752 p~~~~~l~~L~~L~ls~N~l~~~~p 776 (1237)
|..+ .+|+.|++++|.+.+.-+
T Consensus 543 ~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 543 PDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCC---SSCCEEEEEEECCCCSSS
T ss_pred HHHH---CCCCEEEECCCCCCCCCC
T ss_conf 6683---776889931997025366
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=450.52 Aligned_cols=79 Identities=27% Similarity=0.289 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHCCCCCCCCCC-------CCCCCCCCCCCCCEE---EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 135999999610156789998-------754556899998303---4313279981569742899987752212235899
Q 000889 57 NEELTILMAFKQSSIGSDPNG-------YLANWTADALTPCSW---QGVSCSLNSHVTSLNLNNSGLSGSLNLTTLTALP 126 (1237)
Q Consensus 57 ~~~~~all~~k~~~~~~~~~~-------~l~sW~~~~~~~c~W---~gv~c~~~~~v~~L~L~~~~l~~~~~~~~l~~l~ 126 (1237)
..|+.||.+||++.. .++.. ..++|+.. .|||.| .||+|+..+||+.|+|+++++.|.++ ..+..++
T Consensus 29 ~~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp-~~l~~L~ 105 (636)
T 4eco_A 29 IKDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHTT-GGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC-GGGGGCT
T ss_pred HHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCC-HHHHCCC
T ss_conf 788999999999758-99745477677657887779-98000147798487678978899842766577288-5785684
Q ss_pred CCCEEECCCCCC
Q ss_conf 879488548978
Q 000889 127 YLEHLNLQGNSF 138 (1237)
Q Consensus 127 ~L~~L~Ls~n~l 138 (1237)
+|+.|+|++|.+
T Consensus 106 ~L~~L~Ls~N~~ 117 (636)
T 4eco_A 106 ELEVLALGSHGE 117 (636)
T ss_dssp TCCEEESCCGGG
T ss_pred CCEEEECCCCCC
T ss_conf 511898768851
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=449.02 Aligned_cols=519 Identities=20% Similarity=0.195 Sum_probs=279.9
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 98794885489788454123320175566524547733688551000136885556983487667783325995119986
Q 000889 126 PYLEHLNLQGNSFSAGDLSTSKTSSCSLVTMDLSSNNITGSLPGRSFLLSCDRLSYVNLSHNSISGGSLHIGPSLLQLDL 205 (1237)
Q Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~~~~L~~L~ls~n~l~~~~l~~~~~L~~L~L 205 (1237)
+.++.|+|++|.++... +..+..+.+|++|+|++|.+.+..+ ..+..+++|++|++++|.++..
T Consensus 33 ~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~------------- 96 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHE--DTFQSQHRLDTLVLTANPLIFM------------- 96 (606)
T ss_dssp TTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCCCEECT--TTTTTCTTCCEEECTTCCCSEE-------------
T ss_pred CCCCEEECCCCCCCCCC-HHHHCCCCCCEEEECCCCCCCEECH--HHCCCCCCCCEEECCCCCCCCC-------------
T ss_conf 86758981587347179-6672567665289788983552485--1136843367644889856545-------------
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCC
Q ss_conf 89979972122101237888888983379898423210024987568976455456743201110258972499677886
Q 000889 206 SGNQISDSALLTYSLSNCQNLNLLNFSDNKLPGKLNATSVNCKSISTIDLSYNLLSGEIPASFVADSSGSLKYLDLSHNN 285 (1237)
Q Consensus 206 s~n~I~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~N~ 285 (1237)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.....+. .+++|++|++++|.
T Consensus 97 ----------~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 97 ----------AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNNA 164 (606)
T ss_dssp ----------CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC--CCTTCCEEECCSSC
T ss_pred ----------CHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCC
T ss_conf ----------865523442153765212676657810122378223898879834114765456--87656877765684
Q ss_pred CCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-
Q ss_conf 78976644446779975--663157643475561010024640199922774579973333303788869965787477-
Q 000889 286 FTGKFSNLDFGRCGNLS--VITLSQNGLSGTEFPASLKNCQLLETLNMSHNALQGGIPGFLLGSFRNLKQLSLAHNQFA- 362 (1237)
Q Consensus 286 l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~- 362 (1237)
++ ......+..+++|+ .|++++|.+++. +.......+|+.|++++|.. ++. .+..+.++....+....+.
T Consensus 165 l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 165 IH-YLSKEDMSSLQQATNLSLNLNGNDIAGI--EPGAFDSAVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp CC-EECHHHHHTTTTCCSEEEECTTCCCCEE--CTTTTTTCEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTT
T ss_pred CC-CCCHHHHHHHCCCCEEEEECCCCCCCCC--CHHHHHHCCCCCCCCCCCHH---HHH-HHHHCCCCCHHHEECHHHCC
T ss_conf 45-5496563322156403896679814754--86673001001355677266---777-76513356442200201102
Q ss_pred ---CCCCHHHHHHCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEEECCCCCCCC
Q ss_conf ---999546765148--796797545767898995734666565420357534676510000023556088613778789
Q 000889 363 ---GEIPPELGQACG--TLRELDLSSNRLTGELPSTFASCSSLHSLNLGSNMLSGNFLNTVVSKISSLIYLYVPFNNISG 437 (1237)
Q Consensus 363 ---~~i~~~l~~~~~--~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 437 (1237)
..++...+..+. +|+.|++++|.+++..+..|..+++|+.|++++|.++. .+..+..+++|++|++++|.+.+
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSB
T ss_pred CCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCC--CCHHHCCCCCCCEEECCCCCCCC
T ss_conf 6412268667430320750599944576585577774456678889562882677--78214165468889771687686
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECC--CCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 87866777787759986388475558999999998743451012585111014--6222266655475256873446789
Q 000889 438 PVPLSLTNCTQLRVLDLSSNGFTGTIPSGFCSPPNFPALEKIVLPNNYLSGTV--PLELGSCKNLKTIDLSFNSLAGPVP 515 (1237)
Q Consensus 438 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~p 515 (1237)
..+..+..+++|+.|++++|.+.+.++.... ..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+++..|
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTT--TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred CCHHHHHCCCCCCEEECCCCCCCCCCCHHHH--HCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCH
T ss_conf 7602330157689888989974443462455--06675898878899666456752210567888989898996775788
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 42458767561451225565745654224688855898256532343563212579866899005501124892322834
Q 000889 516 SEIWSLPNLSDLVMWANNLTGEIPEGICVNGGNLETLILNNNHLTGAIPKSIASCTNMLWVSLSSNQLTGEIPAGIGNLV 595 (1237)
Q Consensus 516 ~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 595 (1237)
..+..+++|+.|++++|.+.+..+... +..+++|+.|++++|++.+..|..+..++
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSP------------------------FQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCT------------------------TTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCHH------------------------HHCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 873477457768788886777565212------------------------41765588898989855776877873788
Q ss_pred CCCEEEECCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 566178157735347---99788788989899778971445789467730165467644575310111579864358997
Q 000889 596 KLAILQLGNNSLTGQ---VPQGLGKCRSLVWLDLNSNNLSGPLPSELANQAGVVMPGIVSGKQFAFVRNEGGTACRGAGG 672 (1237)
Q Consensus 596 ~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1237)
+|+.|++++|.+.+. .+..+..+++|+.|++++|++++..|..+.++
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------------------------------ 499 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL------------------------------ 499 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC------------------------------
T ss_pred CCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCC------------------------------
T ss_conf 78889898998885434543124048876688799996670686463265------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 42114787653579865467787420026202332169933399966896886688000289888599925840233222
Q 000889 673 LVEFEGIRPERLEGFPMVHSCPSTRIYTGMTMYTFTTNGSLIYLDLSYNSLSGTLPENFGSLNYLQVLNLGHNKLTGHIP 752 (1237)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 752 (1237)
.+|+.|+|++|++++..|..+..++.| .|++++|++++..|
T Consensus 500 --------------------------------------~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 500 --------------------------------------KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp --------------------------------------TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred --------------------------------------CCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCH
T ss_conf --------------------------------------678889898980686896684756651-89876894142687
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 312455577688477874678787
Q 000889 753 DSFGGLKAIGVLDLSHNNFQGSIP 776 (1237)
Q Consensus 753 ~~~~~l~~L~~L~ls~N~l~~~~p 776 (1237)
..+..+++|+.|++++|.+.+..+
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEECSGG
T ss_pred HHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 662567787889677998616677
Done!