BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000890
(1237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 191 LRNGLRYLILPN-KVPASRFEAHMEIH-AGSIDEEDDEQGIAHMIEHVAFLGSKK----- 243
L NGL+ ++ + + P HM + GS+DE G+AH +EH+ F G+K
Sbjct: 12 LPNGLKVVVREDHRAPTL---VHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGE 68
Query: 244 -REKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRV 302
+++ G R NA+T +T ++ P+ D++ L D + + + +
Sbjct: 69 FSKRVAAMGGRDNAFTTRDYTAYYQQVPS---SRLSDVMGLEADRMANLVVDDELFKKEI 125
Query: 303 E---KERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFP-IGLEEQIKKWDADKIR 358
+ +ERR + E + + H + R P IG I+ A +R
Sbjct: 126 QVIAEERRWRTDDKPRSKAYEALMAASYVAHPY-------RVPVIGWMNDIQNMTAQDVR 178
Query: 359 KFHERWYFPANATLYIVGDIDNVSKTIDQIEAVF 392
+++RWY P NAT+ +VGD+++ EAVF
Sbjct: 179 DWYKRWYGPNNATVVVVGDVEH--------EAVF 204
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 191 LRNGLRYLILPN-KVPASRFEAHMEIH-AGSIDEEDDEQGIAHMIEHVAFLGSKK----- 243
L NGL+ ++ + + P HM + GS+DE G+AH +EH+ F G+K
Sbjct: 12 LPNGLKVVVREDHRAPTL---VHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGE 68
Query: 244 -REKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRV 302
+++ G R NA+T +T ++ P+ D++ L D + + + +
Sbjct: 69 FSKRVAAMGGRDNAFTTRDYTAYYQQVPS---SRLSDVMGLEADRMANLVVDDELFKKEI 125
Query: 303 E---KERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFP-IGLEEQIKKWDADKIR 358
+ +ERR + E + + H + R P IG I+ A +R
Sbjct: 126 QVIAEERRWRTDDKPRSKAYEALMAASYVAHPY-------RVPVIGWMNDIQNMTAQDVR 178
Query: 359 KFHERWYFPANATLYIVGDIDNVSKTIDQIEAVF 392
+++RWY P NAT+ +VGD+++ EAVF
Sbjct: 179 DWYKRWYGPNNATVVVVGDVEH--------EAVF 204
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 20/210 (9%)
Query: 191 LRNGLRYLILPNKVPASR-FEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKR----- 244
L NG+R I+ K+ R + + GS E +E GI+H +EH+ F G+ R
Sbjct: 7 LDNGVR--IITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEI 64
Query: 245 -EKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVE 303
E G + NA+T +T + Y K D D +D L+++ FH F +E
Sbjct: 65 AEFFDSIGGQVNAFTSKEYTCY------YAKVLD-DHAGQAIDTLSDMFFHSTFQKEELE 117
Query: 304 KERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPI-GLEEQIKKWDADKIRKFHE 362
KER+ + E++M++ + LL + K S +PI G E + ++ +R + +
Sbjct: 118 KERKVVFEEIKMVDDTPDDIVHDLLSSA-TYGKHSLGYPILGTVETLNSFNEGMLRHYMD 176
Query: 363 RWYFPANATLYIVGDIDNVSKTIDQIEAVF 392
R+Y + + G++ + + ID+I+ F
Sbjct: 177 RFYTGDYVVISVAGNVHD--ELIDKIKETF 204
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 180 LPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
L S P+ QL NGLR + P + I AGS E + G + +EH+AF
Sbjct: 42 LQSVPETQVSQLDNGLRVASEQSSQPTC--TVGVWIDAGSRYESEKNNGAGYFVEHLAFK 99
Query: 240 GSKKR------EKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAF 293
G+K R +++ GA NAY+ HT ++I + +KD LP ++ L +I
Sbjct: 100 GTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKA--LSKD-----LPKAVELLADIVQ 152
Query: 294 HPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLE---EQIK 350
+ S++EKER IL ELQ +T V + +LH+ +E E ++
Sbjct: 153 NCSLEDSQIEKERDVILQELQENDTSMRDV---VFNYLHATAFQGTPLAQSVEGPSENVR 209
Query: 351 KWDADKIRKFHERWYFPANATLYIVGDIDN 380
K + ++ R Y L G +++
Sbjct: 210 KLSRADLTEYLSRHYKAPRMVLAAAGGLEH 239
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 180 LPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
L S P+ QL NGLR + P + I AGS E + G + +EH+AF
Sbjct: 8 LQSVPETQVSQLDNGLRVASEQSSQPTC--TVGVWIDAGSRYESEKNNGAGYFVEHLAFK 65
Query: 240 GSKKR------EKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAF 293
G+K R +++ GA NAY+ HT ++I + +KD LP ++ L +I
Sbjct: 66 GTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKA--LSKD-----LPKAVELLADIVQ 118
Query: 294 HPKFLSSRVEKERRAILSELQMMNT 318
+ S++EKER IL ELQ +T
Sbjct: 119 NCSLEDSQIEKERDVILQELQENDT 143
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 180 LPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
L S P+ QL NGLR + P + I AGS E + G + +EH+AF
Sbjct: 8 LQSVPETQVSQLDNGLRVASEQSSQPTC--TVGVWIDAGSRYESEKNNGAGYFVEHLAFK 65
Query: 240 GSKKR------EKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAF 293
G+K R +++ GA NAY+ HT ++I + +KD LP ++ L +I
Sbjct: 66 GTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKA--LSKD-----LPKAVELLADIVQ 118
Query: 294 HPKFLSSRVEKERRAILSELQMMNT 318
+ S++EKER IL ELQ +T
Sbjct: 119 NCSLEDSQIEKERDVILQELQENDT 143
>pdb|3GO9|A Chain A, Predicted Insulinase Family Protease From Yersinia Pestis
Length = 492
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 93/214 (43%), Gaps = 20/214 (9%)
Query: 180 LPSHPKLYRGQLRNGLRYLILPN-KVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAF 238
L P +G+L NG + +L + P+ R E + ++ GS+ E E G AH++ +A
Sbjct: 20 LQPDPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLAL 79
Query: 239 LGS-----KKREKLLGTGARSN-----AYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDAL 288
S + + L G + A T + T++ + P D +D L + D
Sbjct: 80 XSSASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTA 139
Query: 289 NEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQ 348
+A + +++ + I + Q + +R + + + P+
Sbjct: 140 GNLAVSEQTVNAALNTATDPIATFPQNIQEPWWRYRLKGSSLIGHDPGQPVTQPV----- 194
Query: 349 IKKWDADKIRKFHERWYFPANATLYIVGDIDNVS 382
D +K+++F+++WY P TLY+VG++D+ S
Sbjct: 195 ----DVEKLKQFYQQWYTPDAXTLYVVGNVDSRS 224
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 174 AFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMI 233
A+ L S P+ QL NG+R + P + I AGS E + G + +
Sbjct: 2 AYYAQALQSVPETQVSQLDNGVRVASEQSSQPTCT--VGVWIDAGSRYESEKNNGAGYFL 59
Query: 234 EHVAFLGSKKR------EKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDA 287
EH+AF G+K R +++ GA NAY+ HT ++I + +KD +P ++
Sbjct: 60 EHLAFKGTKNRPQNALEKEVESMGAHLNAYSSREHTAYYIKA--LSKD-----VPKAVEL 112
Query: 288 LNEIAFHPKFLSSRVEKERRAILSELQMMNT 318
L +I + S++EKER I+ ELQ +T
Sbjct: 113 LADIVQNCSLEDSQIEKERDVIVRELQENDT 143
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 180 LPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
L + P+ L NGLR + P + I AGS E + G + +EH+AF
Sbjct: 8 LQNIPETNVTTLDNGLRVASEESSQPTC--TVGVWIGAGSRYENEKNNGAGYFVEHLAFK 65
Query: 240 GSKKR------EKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAF 293
G+KKR +++ GA N YT T F+I + +KD +P V++ L ++
Sbjct: 66 GTKKRPCAAFEKEVESMGAHFNGYTSREQTAFYIKA--LSKD-----MPKVVELLADVVQ 118
Query: 294 HPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIK 350
+ S++EKER IL EL+ M+ V L + R G E IK
Sbjct: 119 NCALEESQIEKERGVILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIK 175
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 19/187 (10%)
Query: 190 QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKK------ 243
+L NG+ L++ + A + + GS+++ + QG+AH +EH++ +GSKK
Sbjct: 25 RLDNGMVVLLVSDPQAVKSLSA-LVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADS 83
Query: 244 -REKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRV 302
E L G NA T + T F++ + + D LP +D L + P
Sbjct: 84 LAEYLKMHGGSHNASTAPYRTAFYL-------EVENDALPGAVDRLADAIAEPLLDKKYA 136
Query: 303 EKERRAILSELQMMNTIE----YRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIR 358
E+ER A+ +EL M T + +V + + H +K S L ++ ++
Sbjct: 137 ERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALK 196
Query: 359 KFHERWY 365
FHE++Y
Sbjct: 197 DFHEKYY 203
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 184 PKLYRGQLRNGLRYLI--LPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGS 241
P +L NGL +PN A+ + + AGS E G AH +EH+AF G+
Sbjct: 5 PGTRTSKLPNGLTIATEYIPNTSSAT---VGIFVDAGSRAENVKNNGTAHFLEHLAFKGT 61
Query: 242 KKREK------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHP 295
+ R + + G+ NAYT +TV+ Y K ED +P +D L++I
Sbjct: 62 QNRPQQGIELEIENIGSHLNAYTSRENTVY------YAKSLQED-IPKAVDILSDILTKS 114
Query: 296 KFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDAD 355
+S +E+ER I+ E + ++ + V L + +++ R +G + IK
Sbjct: 115 VLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRT 174
Query: 356 KIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGH 394
++ + + Y L G +D+ K + + FGH
Sbjct: 175 DLKDYITKNYKGDRMVLAGAGAVDH-EKLVQYAQKYFGH 212
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 184 PKLYRGQLRNGLRYLI--LPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGS 241
P +L NGL +PN A+ + + AGS E G AH ++H+AF G+
Sbjct: 5 PGTRTSKLPNGLTIATEYIPNTSSAT---VGIFVDAGSRAENVKNNGTAHFLQHLAFKGT 61
Query: 242 KKREK------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHP 295
+ R + + G+ NAYT +TV+ Y K ED +P +D L++I
Sbjct: 62 QNRPQQGIELEIENIGSHLNAYTSRENTVY------YAKSLQED-IPKAVDILSDILTKS 114
Query: 296 KFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDAD 355
+S +E+ER I+ E + ++ + V L + +++ R +G + IK
Sbjct: 115 VLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRT 174
Query: 356 KIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGH 394
++ + + Y L G +D+ K + + FGH
Sbjct: 175 DLKDYITKNYKGDRMVLAGAGAVDH-EKLVQYAQKYFGH 212
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H +EH+ FL
Sbjct: 29 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIAGLSHFLEHMLFL 87
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 88 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 140
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F S ++E A+ SE
Sbjct: 141 LSPLFDESAKDREVNAVDSE 160
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H EH+ FL
Sbjct: 58 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIPGLSHFCEHMLFL 116
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 117 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 169
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F +S ++E A+ SE
Sbjct: 170 LCPLFDASCKDREVNAVDSE 189
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H EH+ FL
Sbjct: 17 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIPGLSHFCEHMLFL 75
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 76 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 128
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F +S ++E A+ SE
Sbjct: 129 LCPLFDASCKDREVNAVDSE 148
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H ++H+ FL
Sbjct: 29 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFL 87
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 88 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 140
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F S ++E A+ SE
Sbjct: 141 LSPLFDESAKDREVNAVDSE 160
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H ++H+ FL
Sbjct: 58 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFL 116
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 117 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 169
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F S ++E A+ SE
Sbjct: 170 LSPLFDESAKDREVNAVDSE 189
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H ++H+ FL
Sbjct: 29 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFL 87
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 88 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 140
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F S ++E A+ SE
Sbjct: 141 LSPLFDESAKDREVNAVDSE 160
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H ++H+ FL
Sbjct: 29 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFL 87
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 88 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 140
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F S ++E A+ SE
Sbjct: 141 LSPLFDESAKDREVNAVDSE 160
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H ++H+ FL
Sbjct: 16 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFL 74
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 75 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 127
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F S ++E A+ SE
Sbjct: 128 LSPLFDESAKDREVNAVDSE 147
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H EH+ FL
Sbjct: 29 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIAGLSHFCEHMLFL 87
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 88 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 140
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F S ++E A+ SE
Sbjct: 141 LCPLFDESCKDREVNAVDSE 160
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H +H+ FL
Sbjct: 29 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIAGLSHFCQHMLFL 87
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 88 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 140
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F S ++E A+ SE
Sbjct: 141 LCPLFDESCKDREVNAVDSE 160
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 27/203 (13%)
Query: 189 GQLRNGLRYLILPNKVPASRFEA-HMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREKL 247
+LRNGLR ++ VP +R A + G+ DE +E G++H +EH F G + + L
Sbjct: 5 AELRNGLR--VIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHXVFKGPEDXDAL 62
Query: 248 L------GTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSR 301
GA+ NA+T TV++ + DLL L L P
Sbjct: 63 AVNRAFDRXGAQYNAFTSEEATVYY---GAVLPEFAYDLLGLFAKLL-----RPALREED 114
Query: 302 VEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFP-----IGLEEQIKKWDADK 356
+ E+ IL E+ Y+ + + + + P +G E I +
Sbjct: 115 FQTEKLVILEEIA-----RYQDRPGFXAYEWARARFFQGHPLGNSVLGTRESITALTREG 169
Query: 357 IRKFHERWYFPANATLYIVGDID 379
+H R Y P N L G +D
Sbjct: 170 XAAYHRRRYLPKNXVLAATGRVD 192
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 181 PSHPKLYRG-QLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
P + YRG +L NG++ L++ + + A +++H GS+ + + G++H H+ FL
Sbjct: 58 PEDKREYRGLELANGIKVLLISDPT-TDKSSAALDVHIGSLSDPPNIPGLSHFCFHMLFL 116
Query: 240 GSKKREK-------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292
G+KK K L SNA+T HT Y D + L LD +
Sbjct: 117 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHT-------NYYFDVSHEHLEGALDRFAQFF 169
Query: 293 FHPKFLSSRVEKERRAILSE 312
P F +S ++E A+ SE
Sbjct: 170 LCPLFDASCKDREVNAVDSE 189
>pdb|3GWB|A Chain A, Crystal Structure Of Peptidase M16 Inactive Domain From
Pseudomonas Fluorescens. Northeast Structural Genomics
Target Plr293l
pdb|3GWB|B Chain B, Crystal Structure Of Peptidase M16 Inactive Domain From
Pseudomonas Fluorescens. Northeast Structural Genomics
Target Plr293l
Length = 434
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 14/183 (7%)
Query: 1016 PKSEESMMLKDIEKDQQRKLRSHPLFFGITMG---LLAEIINSRLFTTVRDSLGLTYDVS 1072
P S+ S+ L + D R P + +++G L +RL + VR+ GLTY V
Sbjct: 246 PSSQTSLXLAQLGID-----RDDPDYAAVSLGNQILGGGGFGTRLXSEVREKRGLTYGVY 300
Query: 1073 FELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRH 1132
G + I++ + + ++V N Q+ELD AKR L
Sbjct: 301 S--GFTPXQARGPFXINLQTRAEXSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSF 358
Query: 1133 EAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQ-LRVDEDSL 1191
SNA +G L ++P +S ++D + +VE + A + L VD+ +
Sbjct: 359 PLSTASNADIVGQLGAXGFYNLP---LSYLEDFXRQSQELTVEQVKAAXNKHLNVDKXVI 415
Query: 1192 YSC 1194
S
Sbjct: 416 VSA 418
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|D Chain D, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 424
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 209 FEAHMEIHAGSIDEEDDEQGIAHMIEHV--AFLGSKKR--------EKLLGTGARSNAYT 258
+ ++ AGS E D+ G+A M + A GS K ++L GAR
Sbjct: 26 LDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGA 85
Query: 259 DFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKER-RAI--LSELQM 315
+ F + + + + L L +I HP F + +E+ER RAI L E Q
Sbjct: 86 EADRASFSLRVLSSPAERNS-----ALTILRDILAHPTFPAPVLERERARAIAGLREAQT 140
Query: 316 M-NTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYI 374
+I R +L H +S ++K D++ FH Y A + +
Sbjct: 141 QPGSILGRRFTELAYGKHPYGHVSS------VATLQKISRDQLVSFHRTHYVARTAVVTL 194
Query: 375 VGDIDNV-SKTIDQ 387
VGDI ++TI Q
Sbjct: 195 VGDITRAEAETIAQ 208
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 10/165 (6%)
Query: 1036 RSHPLFFGITMG---LLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLK-LGWYVISVT 1091
R P FF + +G L SRL +RD GL+Y + F K +G + I
Sbjct: 254 RGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGA---YSYFSPQKSMGLFQIGFE 310
Query: 1092 SPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLQA 1151
+ K +AV + L EL AK L+ + SNA LG +A +
Sbjct: 311 TRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGY 370
Query: 1152 SSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIG 1196
+P + + +A +VE + A+ + E+ + +G
Sbjct: 371 YGLP---LDYLDHYTERVQAVTVEQVREAFARHVKRENLITVVVG 412
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 39/198 (19%)
Query: 225 DEQGIAHMIEHVAFLGSKKRE------KLLGTGARS--NAYTDFHHTVFHIHSPTYTKDS 276
D GI H+++H GS+K +LL + NA+T T + + S T TKD
Sbjct: 71 DSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVAS-TNTKDF 129
Query: 277 DEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQ-----------MMNTIE--YRV 323
+L+ + LDA+ F PK + ++ EL + N + Y
Sbjct: 130 -YNLVDVYLDAV----FFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEXKGVYSQ 184
Query: 324 DCQLLQHLHSENKLSKRFPIGLE-----EQIKKWDADKIRKFHERWYFPANATLYIVGDI 378
+L + ++ LS G++ + I ++ ++FH ++Y P+NA ++ GD
Sbjct: 185 PDNILGRI-AQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDD 243
Query: 379 DNV------SKTIDQIEA 390
D V S+ +D EA
Sbjct: 244 DPVHRLRVLSEYLDXFEA 261
>pdb|1NYA|A Chain A, Nmr Solution Structure Of Calerythrin, An Ef-hand Calcium-
Binding Protein
Length = 176
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 354 ADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENEXXXXXXXXXXXFG 413
+D+++K +RW F N L + + K I FG E FG
Sbjct: 6 SDRLKKRFDRWDFDGNGAL----ERADFEKEAQHIAEAFGKDAGAAEVQTLKNA----FG 57
Query: 414 AMANFLVPKLSVGLPGSLSHER 435
+ ++L + VG GSL+ E+
Sbjct: 58 GLFDYLAKEAGVGSDGSLTEEQ 79
>pdb|2HYP|A Chain A, Crystal Structure Of Rv0805 D66a Mutant
Length = 280
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 168 ERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSI 220
+R+E FL E PS L R + +GLR ++L VP H EI A +
Sbjct: 102 DRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHH---HGEIRASQL 151
>pdb|2HYO|A Chain A, Crystal Structure Of Rv0805 N97a Mutant
Length = 280
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 168 ERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSI 220
+R+E FL E PS L R + +GLR ++L VP H EI A +
Sbjct: 102 DRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHH---HGEIRASQL 151
>pdb|2HY1|A Chain A, Crystal Structure Of Rv0805
Length = 280
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 168 ERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSI 220
+R+E FL E PS L R + +GLR ++L VP H EI A +
Sbjct: 102 DRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHH---HGEIRASQL 151
>pdb|4FYE|A Chain A, Crystal Structure Of A Legionella Phosphoinositide
Phosphatase, Sidf
pdb|4FYF|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
pdb|4FYG|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
Length = 761
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 430 SLSHERS----SNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLM 485
+ SH+RS NS +++I RH+ H+ S SG GA +P + + D + + +
Sbjct: 231 TTSHKRSDLVLGNSSMARMIAGTRHSDGTVTIHHDSFSGPGARMPYSDFKGADDYKKLAI 290
Query: 486 KRIFL 490
K + L
Sbjct: 291 KAVTL 295
>pdb|3IB7|A Chain A, Crystal Structure Of Full Length Rv0805
pdb|3IB8|A Chain A, Crystal Structure Of Full Length Rv0805 In Complex With
5'-amp
Length = 330
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 168 ERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSI 220
+R+E FL E PS L R + +GLR ++L VP H EI A +
Sbjct: 112 DRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHH---HGEIRASQL 161
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 509 TSVEMDHSDSGREGCTVTTLTVTAEPKNWQS-AVRVAVQEVRRLKEFGVTNGELTRYMDA 567
TS E G G + ++ +T P+ + + A V + ++ R KEFG + +T Y D
Sbjct: 555 TSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDP 614
Query: 568 -LLKDSEHLA--AMIDNISSVDNLDFIMESDALGHTVMDQR 605
+ D H+ A ++N+S ++ +D+ V+DQR
Sbjct: 615 EIPNDLLHIKKYAPLENLSLTQKYPTVLITDS----VLDQR 651
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,387,719
Number of Sequences: 62578
Number of extensions: 1324135
Number of successful extensions: 3373
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3321
Number of HSP's gapped (non-prelim): 48
length of query: 1237
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1127
effective length of database: 8,089,757
effective search space: 9117156139
effective search space used: 9117156139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)