Query 000890
Match_columns 1237
No_of_seqs 395 out of 3184
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 22:25:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000890.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_22-26//hhsearch_pdb/000890hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fge_A Atprep2;, zinc metallop 1.0 1 1 716.1 53.3 867 179-1204 31-981 (995)
2 1q2l_A Protease III; hydrolase 1.0 1 1 714.0 75.5 855 184-1199 19-907 (939)
3 3s5m_A Falcilysin; M16 metallo 1.0 1 1 694.5 46.1 934 141-1204 51-1179(1193)
4 3cww_A Insulysin, insulin-degr 1.0 1 1 679.8 70.2 866 179-1202 28-937 (990)
5 3eoq_A Putative zinc protease; 1.0 1 1 443.1 33.0 395 186-654 2-404 (406)
6 3ami_A Zinc peptidase; alpha/b 1.0 1 1 430.3 35.8 407 184-656 5-424 (445)
7 3go9_A Insulinase family prote 1.0 1 1 424.6 35.4 435 178-682 18-466 (492)
8 3hdi_A Processing protease; CA 1.0 1 1 420.2 32.3 397 186-655 2-405 (421)
9 1pp9_A Ubiquinol-cytochrome C 1.0 1 1 411.1 31.4 406 179-655 7-429 (446)
10 1hr6_A Alpha-MPP, mitochondria 1.0 1 1 403.8 34.0 423 182-682 2-455 (475)
No 1
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=716.09 Aligned_cols=867 Identities=14% Similarity=0.081 Sum_probs=607.2
Q ss_pred CCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH------H--HHC
Q ss_conf 99999972899805995999977799984489999980457899999998999999998439977365------8--612
Q 000890 179 ELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREK------L--LGT 250 (1237)
Q Consensus 179 ~~~~~p~~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~~------l--~~~ 250 (1237)
|....+.++..+|+||++|+++++++.+. +|.+|+++|+.++.|+||++|||+|+||++|+. + ..+
T Consensus 31 ~~~~~~~~~~~~l~nGl~v~~~~~~~~~~------~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~ 104 (995)
T 2fge_A 31 SECKSKAILFKHKKTGCEVMSVSNEDENK------VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSL 104 (995)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEECSCSSE------EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCC
T ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCCC------EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
T ss_conf 21154579999978998899997699861------799996789869987689999997178878998467999997551
Q ss_pred CCEEEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC--CHHHHHHH---------------HHHHHHHH
Q ss_conf 97177982475599999927998887636399999999998719999--94899999---------------99999999
Q 000890 251 GARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKF--LSSRVEKE---------------RRAILSEL 313 (1237)
Q Consensus 251 G~~~na~t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f--~~~~~~~e---------------r~~v~~e~ 313 (1237)
|+++||+|+.|+|+|+++++. .++++.+|++++|++++|.| ++++|++| |++|++|+
T Consensus 105 g~~~NA~T~~d~T~y~~~~~~------~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~ 178 (995)
T 2fge_A 105 HTFLNAFTYPDRTCYPVASTN------TKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEM 178 (995)
T ss_dssp EEEECCEECSSEEEEEEEESS------HHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHH
T ss_pred CCCCEEEECCCCEEEEEECCC------HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 887420677983599984488------89999999999999758787799899987666640456554321223199998
Q ss_pred HHCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9405-948789999999740489999999999988862467999999998104578719999926998578999999883
Q 000890 314 QMMN-TIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVF 392 (1237)
Q Consensus 314 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~i~~~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f 392 (1237)
++.. ++..++...+...+|++++|+ ++++|++++|.++|+++|++||++||+|+||+|+|+||+|+ ++++++|+++|
T Consensus 179 ~~~~~~p~~~~~~~~~~~~~~~~py~-~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~-~~~~~~i~~~f 256 (995)
T 2fge_A 179 KGVYSQPDNILGRIAQQALSPENTYG-VDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDP-VHRLRVLSEYL 256 (995)
T ss_dssp HHHTTSHHHHHHHHHHHHHCTTSGGG-SCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCH-HHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHHH
T ss_conf 75048889999999999718999887-77999967632158999999999818842169999869999-99999999998
Q ss_pred CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-H-HCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6999--99988988999974323322223455445899997655677863026886-4-103579983223446899988
Q 000890 393 GHTG--NENETASASTPTSSAFGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIR-R-ERHAVRPPVEHNWSLSGSGAD 468 (1237)
Q Consensus 393 ~~~~--~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~~~~p~~~~~ 468 (1237)
++|+ .+..+... +.++.+. .|. .....+.. . +....++.+.++|..|....+
T Consensus 257 ~~~~~~~~~~~~~~--~~~~~~~------~~~----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (995)
T 2fge_A 257 DMFEASPSPNSSKI--KFQKLFS------EPV----------------RLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLD 312 (995)
T ss_dssp TTCCCCSHHHHSCC--CCCCCCS------SCE----------------EEEEEEECCSSSCGGGCEEEEEEEECCSSCCC
T ss_pred HHCCCCCCCCCCCC--CCCCCCC------CCC----------------EEEEECCCCCCCCCCCCCEEEEEEECCCCCCC
T ss_conf 51775456777665--7777888------870----------------58886056778876676089999976887679
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCCCCEEEEE-EEECCCCHHHHHHHHHH
Q ss_conf 8875334378999999999999999999998620189990475325-676556553099999-99268869999999999
Q 000890 469 IPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVEMD-HSDSGREGCTVTTLT-VTAEPKNWQSAVRVAVQ 546 (1237)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~~l~~~~l~~rl~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~i~-~~~~~~~~~~a~~~i~~ 546 (1237)
....+...++..++.+..++||.+.+++. +++|+++++ +..... .+.|.+. .++.+++++++++.+.+
T Consensus 313 -------~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~-gl~~~~~~~~~~~~~~--~~~f~i~~~~~~~~~~~~~~~~i~~ 382 (995)
T 2fge_A 313 -------LQTQLALGFLDHLMLGTPASPLRKILLES-GLGEALVSSGLSDELL--QPQFGIGLKGVSEENVQKVEELIMD 382 (995)
T ss_dssp -------HHHHHHHHHHHHHHHSSTTSHHHHHHHHT-TSCSEECSCEEECSSS--SCEEEEEEEEECGGGHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHCCCCCCHHHHHHHHC-CCCCCEEECCCCCCCC--CEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf -------88989999999997679987899999863-8875426515356666--7079999994888789999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC----CC
Q ss_conf 9999998699999999999999999999998430679701---3689998520798016947789999998489----99
Q 000890 547 EVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVD---NLDFIMESDALGHTVMDQRQGHASLVAVAGT----IT 619 (1237)
Q Consensus 547 el~~l~~~git~~El~~ak~~l~~~~~~~~~~~~~~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----vT 619 (1237)
+|++++++||+++||+++|+.+..++. . .....+.. .+..++..+.. .+++....++.+.+++ ++
T Consensus 383 ~l~~l~~~g~~~~el~~ak~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 454 (995)
T 2fge_A 383 TLKKLAEEGFDNDAVEASMNTIEFSLR---E-NNTGSFPRGLSLMLQSISKWIY----DMDPFEPLKYTEPLKALKTRIA 454 (995)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHH---H-CCCTTSCHHHHHHHHHHHHHTT----TSCSSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH---H-CCCCCCCCHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999998739899999999999999977---4-1578896179999999998766----9996787645999999998750
Q ss_pred HH----HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC--------CCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 99----9999999898753037999999873699831564223688--------87555589679999998023788788
Q 000890 620 LE----EVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKKVHIDGI--------GETEFKISPNEIVDAIKSGMEEPIEA 687 (1237)
Q Consensus 620 ~e----di~~~a~k~l~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~--------~~~~~~~s~~~~~~~~~~~~~~~~~~ 687 (1237)
.+ +|++++++||. + +++.++++++|+....... ......++++++.+++++.. .+.+
T Consensus 455 ~~~~~~~v~~~~~~~l~-------~--~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~--~l~~ 523 (995)
T 2fge_A 455 EEGSKAVFSPLIEKLIL-------N--NSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATE--ELKL 523 (995)
T ss_dssp HHCHHHHHHHHHHHHTT-------T--CCCEEEEEEEEETTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--HHHH
T ss_pred CCCCHHHHHHHHHHHHC-------C--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHH
T ss_conf 78607999999999815-------7--99458999983802899999999999999987389999999999999--9999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCC
Q ss_conf 98656772235345899987306998889998874100025888849999349958999726898860799999888877
Q 000890 688 EPELEVPKELISASELEELKLRCRPSFIPPRPELNVTKVHDKESGITQLRLSNGIPINYKISKSEAQGGVMRLIVGGGRA 767 (1237)
Q Consensus 688 ~~~~~~p~~l~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~L~NGi~v~~~~~~~~~~~v~i~l~~~~G~~ 767 (1237)
+++...+++.+ ..+|......+.... ...+++ ..+.||++|+++++ +..+++++.+++++|..
T Consensus 524 ~~~~~~~~~~~--------------~~~p~~~~~~i~~~~-~~~~~~-~~~~nG~~v~~~~~-~~~~~v~~~~~~~~~~~ 586 (995)
T 2fge_A 524 KQETPDPPEAL--------------RCVPSLNLGDIPKEP-TYVPTE-VGDINGVKVLRHDL-FTNDIIYTEVVFDIGSL 586 (995)
T ss_dssp HHTSCCCHHHH--------------TTSCCCCGGGSCSSC-CCCCCE-EEESSSSEEEEEEC-CCSSEEEEEEEEECTTS
T ss_pred HHCCCCCHHHH--------------HHCCCCCHHHCCCCC-CCCCCE-EEECCCCEEEEEEC-CCCCEEEEEEEEECCCC
T ss_conf 85589986788--------------744779976667667-878843-56408924999866-98986999999617889
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEE--EE---EEECCC-----CEEEEEEEEECCCCHHHHHHHH
Q ss_conf 8786531025788898850776899999999999841501--34---421275-----1589899996192039999999
Q 000890 768 AESSESRGAVIVGVRTLSEGGRVGKFSREQVELFCVNHLI--NC---SLESTE-----EFIAMEFRFTLRDNGMRAAFQL 837 (1237)
Q Consensus 768 ~e~~~~~G~a~l~~~~l~~gg~~~~~s~~~l~~~~~~~~~--~~---~~~t~~-----~~~~~~~~~~~~~~~l~~aL~l 837 (1237)
+.+..++++++.+++...| ++++++.++...++.... ++ ++..+. +.+. +++.+..++++.+|++
T Consensus 587 --~~~~~~~~~l~~~~l~~~G-t~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~--i~~~~l~~~l~~~l~l 661 (995)
T 2fge_A 587 --KHELLPLVPLFCQSLLEMG-TKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKII--VRGKSMAGRADDLFNL 661 (995)
T ss_dssp --CTTTGGGHHHHHHHHHHSC-CSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEE--EEEEEEGGGHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEE--EEEEEEHHHHHHHHHH
T ss_conf --9788343799999998489-9888899999999973176484114546676545562699--9999836419999999
Q ss_pred HHHHHHCCCCCHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC-----CC---CH--------HHHHHC
Q ss_conf 9999845899989-9999999999999808689689999999999806999999-----99---97--------688404
Q 000890 838 LHMVLEHSVWLDD-AFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGDERFV-----EP---TP--------KSLENL 900 (1237)
Q Consensus 838 l~~~l~~p~f~~~-~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g---t~--------~~i~~l 900 (1237)
+.+++.+|.|+++ .|+++++.+++++++...++...++......++...+++. ++ .. +.++.+
T Consensus 662 l~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i 741 (995)
T 2fge_A 662 MNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI 741 (995)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999738889189999999999987887544269999999998737946899999735999999999998654189999
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 989999999966159971999984899-889999999962335-788988776766786458899887621688307764
Q 000890 901 NLKSVKEAVMNQFVGNNMEVSIVGDFS-EEEIESCILDYLGTV-RATNDSKREHEYSPILFRPSPSDLHFQQVFLKDTDE 978 (1237)
Q Consensus 901 t~e~l~~~~~~~~~~~n~~lvIvGd~d-~e~i~~~i~~~lg~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1237)
.++|.+||+++|.+++++++|+||++ .+++.++++++|+.| |..... . .+..+. . ... ...+. .+.
T Consensus 742 -~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~---~--~~~~~~--~-~~~-~~~~~--~~~ 809 (995)
T 2fge_A 742 -SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGG---L--VTWDGR--L-PLR-NEAIV--IPT 809 (995)
T ss_dssp -HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSC---S--CCCCCC--C-CCC-CEEEE--CSC
T ss_pred -HHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCC---C--CCCCCC--C-CCC-CEEEE--ECC
T ss_conf -9999999999728688489999488999889999999998527567777---7--765556--7-765-44899--557
Q ss_pred CEEE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HH
Q ss_conf 4067-984378998775457864323346888788999970113445544467765320397327899999999999-99
Q 000890 979 RACA-YIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIIN-SR 1056 (1237)
Q Consensus 979 ~a~v-~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lL~~il~-sr 1056 (1237)
+.+. +.+++. ...+++++ ..+.+|..+++ ++
T Consensus 810 ~v~~~~~~~~~---------------------------------------------~~~~~~d~--~al~vl~~iLg~~~ 842 (995)
T 2fge_A 810 QVNYVGKAGNI---------------------------------------------YSTGYELD--GSAYVISKHISNTW 842 (995)
T ss_dssp SSBEEEEEEEG---------------------------------------------GGGTCCCC--THHHHHHHHHHHTH
T ss_pred CEEEEEEECCC---------------------------------------------CCCCCCCC--HHHHHHHHHHCCCC
T ss_conf 41899974477---------------------------------------------78898664--99999999977770
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCCCCCEEEE-EEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999873149813386665034668851899-999659543899999999999955409999999999999999999998
Q 000890 1057 LFTTVRDSLGLTYDVSFELNLFDRLKLGWYV-ISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRHEAE 1135 (1237)
Q Consensus 1057 L~~~lRek~glaYsv~~~~~~~~~~~~g~~~-i~~~~~p~~~~~~i~~i~~~l~~l~~~~it~~ELe~aK~~l~~~~~~~ 1135 (1237)
||.+||+ +|++|++++.+.. .|.|. ++++++| +++++++.+.++++.+++.++|++||+++|..+++++..
T Consensus 843 L~~~iRe-~g~aYg~~s~~~~-----~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~~~- 914 (995)
T 2fge_A 843 LWDRVRV-SGGAYGGFCDFDS-----HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDS- 914 (995)
T ss_dssp HHHHTTT-TTCCSEEEEEEET-----TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHH-CCCCCCCCEEECC-----CCCEEEEEEECCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 2788631-4877221317179-----9568999997289-989999999999999962998999999999999873368-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCC
Q ss_conf 4435689999998731889998645676499998505999999999873578-99519998106898898
Q 000890 1136 IKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVD-EDSLYSCIGIAGAQAGD 1204 (1237)
Q Consensus 1136 ~~s~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~i~~vT~edI~~~a~~~~~~-~~~~~~~vG~~~~~~~~ 1204 (1237)
..++.............+.+ .++.+++.+.|.+||.+||++++++|+.. .+..++++|+.+.+...
T Consensus 915 ~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 915 YQLPDAKGYSSLLRHLLGVT---DEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp CCCHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 88989999999999974959---99999999999829999999999999865336988998899999762
No 2
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=1.00 E-value=1 Score=714.00 Aligned_cols=855 Identities=14% Similarity=0.126 Sum_probs=603.6
Q ss_pred CCCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH-------HHHCCCEEEE
Q ss_conf 972899805995999977799984489999980457899999998999999998439977365-------8612971779
Q 000890 184 PKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREK-------LLGTGARSNA 256 (1237)
Q Consensus 184 p~~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~~-------l~~~G~~~na 256 (1237)
..++.++|+|||+|++++++..+. +.+.++|++|+++|++++.|+||++|||+|+||++|+. ++.+|+++||
T Consensus 19 ~~~~~~~L~NGl~v~~~~~~~~~~-~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA 97 (939)
T 1q2l_A 19 RQYQAIRLDNGMVVLLVSDPQAVK-SLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNA 97 (939)
T ss_dssp CEEEEEEETTSCEEEEEECTTCSS-EEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCCC-EEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEE
T ss_conf 654899936999899997889881-6899996725888999998569999987806888799936599999976995157
Q ss_pred EECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCC
Q ss_conf 82475599999927998887636399999999998719999948999999999999994059-48789999999740489
Q 000890 257 YTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNT-IEYRVDCQLLQHLHSEN 335 (1237)
Q Consensus 257 ~t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~-~~~~~~~~~~~~l~~~~ 335 (1237)
+|+.|+|+|++++++ ++++.+|++++|++.+|.|++++|++||++|++|+++..+ +..++...+...+|+++
T Consensus 98 ~T~~d~T~y~~~~~~-------~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~ 170 (939)
T 1q2l_A 98 STAPYRTAFYLEVEN-------DALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAH 170 (939)
T ss_dssp EECSSCEEEEEEECG-------GGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTS
T ss_pred EECCCCEEEEEEECH-------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 988986799999478-------9999999999999857799989999999999999985649879999999997568999
Q ss_pred CCCCCCCCCCHHHHCC----CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999888624----679999999981045787199999269985789999998836999999889889999743
Q 000890 336 KLSKRFPIGLEEQIKK----WDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSA 411 (1237)
Q Consensus 336 ~~~~~~~~G~~~~i~~----~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~p~~ 411 (1237)
+| .++++|+.++|.+ +++++|++||++||+|+||+|+|+||+++ ++++++++++|++|+++..+.+.. ..|
T Consensus 171 p~-~~~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~-~~l~~~v~~~f~~~~~~~~~~~~~-~~~-- 245 (939)
T 1q2l_A 171 PG-SKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPL-PELAKMAADTFGRVPNKESKKPEI-TVP-- 245 (939)
T ss_dssp GG-GSCCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCH-HHHHHHHHHTGGGSCCCCCCCCCC-CSC--
T ss_pred CC-CCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHEEEEEECCCCH-HHHHHHHHHHHHHHCCCCCCCCCC-CCC--
T ss_conf 97-6678899999716788459999999999615873569999749999-999999999864333588789978-889--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 23322223455445899997655677863026886410357998322344689998888753343789999999999999
Q 000890 412 FGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLS 491 (1237)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 491 (1237)
.. .+ ......+..++...++.+.++|+.|....++.. ... .+...++++
T Consensus 246 ----------~~---~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~---~~~-~~l~~lLg~---- 294 (939)
T 1q2l_A 246 ----------VV---TD----------AQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRS---KTD-ELITYLIGN---- 294 (939)
T ss_dssp ----------SC---CG----------GGSSEEEEECCSSCCCEEEEEEEEECCGGGGGG---CHH-HHHHHHHHC----
T ss_pred ----------CC---CH----------HHCCEEEEEEECCCCCEEEEEEECCCHHHHHHH---CHH-HHHHHHHCC----
T ss_conf ----------99---97----------894779999827877189999976872776654---789-999999568----
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECC---CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999862018999047532567655655309999999268---8699999999999999998699999999999999
Q 000890 492 ALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEP---KNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDAL 568 (1237)
Q Consensus 492 ~l~~rl~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~---~~~~~a~~~i~~el~~l~~~git~~El~~ak~~l 568 (1237)
...++|...+++ .+++|++++++........+.|.+++.+.+ ++++++++.+.++|++++++||+++||+++|+.+
T Consensus 295 ~~~s~L~~~L~~-~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~ 373 (939)
T 1q2l_A 295 RSPGTLSDWLQK-QGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVL 373 (939)
T ss_dssp CCTTSHHHHHHH-TTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-CCCCHHEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 998719999987-6971212433455568885189999998946665299999999999999986798599999999998
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 99999999843067970136899985207980169477899999984899999999999989875303799999987369
Q 000890 569 LKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAI 648 (1237)
Q Consensus 569 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~~~~~~ 648 (1237)
..++. ..........+..+...+. + .+.++.......+.++|+++|++++++ |. +++..+
T Consensus 374 ~~~~~----~~~~~~~~~~~~~l~~~~~-~----~~~~~~~~~~~~i~~vt~~~i~~~~~~-l~----------~~~~~~ 433 (939)
T 1q2l_A 374 DIDFR----YPSITRDMDYVEWLADTMI-R----VPVEHTLDAVNIADRYDAKAVKERLAM-MT----------PQNARI 433 (939)
T ss_dssp HHHHH----SCCCCCSHHHHHHHHHHHT-T----SCGGGTTTTTTCCCCCCHHHHHHHHHH-CS----------GGGCEE
T ss_pred HHCCC----CCCCCCHHHHHHHHHHHHH-C----CCHHHHHCCCHHHHCCCHHHHHHHHHH-CC----------HHHCEE
T ss_conf 72203----4577885999999999865-0----899997117221310699999999984-69----------877489
Q ss_pred EEECCCCCCCCCCCC-----CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 983156422368887-----555589679999998023788788986567722353458999873069988899988741
Q 000890 649 VACVPKKVHIDGIGE-----TEFKISPNEIVDAIKSGMEEPIEAEPELEVPKELISASELEELKLRCRPSFIPPRPELNV 723 (1237)
Q Consensus 649 ~~~~P~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~l~~~~~~~~~p~~~~~~~ 723 (1237)
++++|+......... ....++++.+.++.+......+..+. + .+|+|. .....
T Consensus 434 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~-----------------n~~~~~-~~~~~ 491 (939)
T 1q2l_A 434 WYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPE----L-----------------NPYIPD-DFSLI 491 (939)
T ss_dssp EEECTTCCCCEECTTTCCEEEEEECCHHHHHHHHHHHHTCCCCCCC----C-----------------CTTCCC-CCCCC
T ss_pred EEECCCCCCCCCCCEECCEEEEEECCHHHHHHHHCCCCCCCCCCCC----C-----------------CCCCCC-CCCCC
T ss_conf 9982788877334543774256308999999875468653566999----7-----------------767886-75305
Q ss_pred EECCCCCCCEEEEEECCCCEEEEEECC-CCC-CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 000258888499993499589997268-988-607999998888778786531025788898850776899999999999
Q 000890 724 TKVHDKESGITQLRLSNGIPINYKISK-SEA-QGGVMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVGKFSREQVELF 801 (1237)
Q Consensus 724 ~~~~~~~~~i~~~~L~NGi~v~~~~~~-~~~-~~v~i~l~~~~G~~~e~~~~~G~a~l~~~~l~~gg~~~~~s~~~l~~~ 801 (1237)
..... ......++++||++|++++++ +.. +...+.+.+..|...++.++.++++++..++..|. +++ ++...
T Consensus 492 ~~~~~-~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~--~~~---~~~~~ 565 (939)
T 1q2l_A 492 KSEKK-YDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLAL--DQL---SNQAS 565 (939)
T ss_dssp CCSSC-CSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHH--HHH---HHHHH
T ss_pred CCCCC-CCCCEEEEECCCCEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH--HHH---HHHHH
T ss_conf 67678-9999799977981685557875589986799999958965589999999999999999999--987---52799
Q ss_pred HHCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHH
Q ss_conf 8415013442127515898999961920399999999999845899989999999999999980868-968999999999
Q 000890 802 CVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPK-SLERSTAHKLML 880 (1237)
Q Consensus 802 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~aL~ll~~~l~~p~f~~~~l~~~k~~~~~~~~~~~~-~~~~~~~~~~~~ 880 (1237)
+.+.+++++ . .+.+.+.+++ ..++++.+|+++.+++.+|.|++++|+++|+.++..+++... +|. ..+...+.
T Consensus 566 l~G~~~~~~--~-~~g~~~~~~g--~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~-~~a~~~l~ 639 (939)
T 1q2l_A 566 VGGISFSTN--A-NNGLMVNANG--YTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAF-EQAIMPAQ 639 (939)
T ss_dssp HTTEEEEEE--E-SSEEEEEEEE--ESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHH-HHHHHHHH
T ss_pred HCCCEEEEE--E-CCCEEEEEEC--CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHH
T ss_conf 769489996--0-8957999976--5676999999999997478989999999999999997634206839-99999999
Q ss_pred HHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98069999999997688404989999999966159971999984899889999999962335788988776766786458
Q 000890 881 AMLNGDERFVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATNDSKREHEYSPILFR 960 (1237)
Q Consensus 881 ~~~~~~~~~~~gt~~~i~~lt~e~l~~~~~~~~~~~n~~lvIvGd~d~e~i~~~i~~~lg~l~~~~~~~~~~~~~~~~~~ 960 (1237)
.+++++.....++.+.+++++.+++.+||+++|.+.+++++|+||++.++++++++++++.|+.+.... .. ....+
T Consensus 640 ~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~--~~-~~~~~- 715 (939)
T 1q2l_A 640 MLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEW--CR-NKDVV- 715 (939)
T ss_dssp HTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCC--CC-CEEEC-
T ss_pred HHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC--CC-CCEEE-
T ss_conf 996689999999999985189999999999998642089999759899999999999999973688655--54-53587-
Q ss_pred CCCCCCCCEEEEECCCCCCEEE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8998876216883077644067-984378998775457864323346888788999970113445544467765320397
Q 000890 961 PSPSDLHFQQVFLKDTDERACA-YIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHP 1039 (1237)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~a~v-~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1039 (1237)
.+ ..............+..+ .+.++.+. + + +
T Consensus 716 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------------------------------------~-~ 747 (939)
T 1q2l_A 716 -VD-KKQSVIFEKAGNSTDSALAAVFVPTGY-D--------------------------------------------E-Y 747 (939)
T ss_dssp -CC-SCEEEEEEECCSSSCEEEEEEEECSSC-C--------------------------------------------H-H
T ss_pred -EC-CCCEEEEECCCCCCCCEEEEEEEECCC-C--------------------------------------------C-H
T ss_conf -07-995489966899987426999996699-9--------------------------------------------9-9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCEE-EEEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3278999999999999999998731498133866650346688518-99999-659543899999999999955409999
Q 000890 1040 LFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGW-YVISV-TSPPGKVHKAVDACKNVLRGLHSNRIV 1117 (1237)
Q Consensus 1040 ~~~~~~~~lL~~il~srL~~~lRek~glaYsv~~~~~~~~~~~~g~-~~i~~-~~~p~~~~~~i~~i~~~l~~l~~~~it 1117 (1237)
...+.+.+|+++++++||.+||+++|++|++++...... ...|+ |.+++ .++|++++++++.+++++..+.+ ++|
T Consensus 748 -~~~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s~~~~~~-~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~~t 824 (939)
T 1q2l_A 748 -TSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVG-RQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLR-AMK 824 (939)
T ss_dssp -HHHHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEEEEEET-TEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECC-CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-HCC
T ss_conf -999999999999888889999999874715534676539-75689999987999989999999999999999998-689
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCE-
Q ss_conf 999999999999999998443-----56899999987318899986456764999985059999999998735789951-
Q 000890 1118 QRELDRAKRTLLMRHEAEIKS-----NAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSL- 1191 (1237)
Q Consensus 1118 ~~ELe~aK~~l~~~~~~~~~s-----~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~i~~vT~edI~~~a~~~~~~~~~~- 1191 (1237)
++||+++|+.++.++....++ +.+|...+ ..++.. ++..++.+.+++||++||++++++++.+++..
T Consensus 825 ~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~----~~~~~~---d~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~~~ 897 (939)
T 1q2l_A 825 PDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFD----RGNMRF---DSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMA 897 (939)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHH----HTCTTC---CHHHHHHHHHHTCCHHHHHHHHHHHTTSCSSEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCCCC---CHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 9999999999999861799989999999999985----389887---868999999860899999999999844777777
Q ss_pred EE--EEEECC
Q ss_conf 99--981068
Q 000890 1192 YS--CIGIAG 1199 (1237)
Q Consensus 1192 ~~--~vG~~~ 1199 (1237)
++ ++|+..
T Consensus 898 l~v~v~G~~~ 907 (939)
T 1q2l_A 898 ILSQISGSQN 907 (939)
T ss_dssp EEEEECCSSH
T ss_pred EEEEEECCCC
T ss_conf 9999966788
No 3
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=1.00 E-value=1 Score=694.51 Aligned_cols=934 Identities=11% Similarity=0.070 Sum_probs=619.6
Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCC
Q ss_conf 84221104798864576777788984203344321048999999728998059959999777999844899999804578
Q 000890 141 DEPHAASTTWPDGIIERQSLDPLYPELERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSI 220 (1237)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~~~~~~~~~~~p~~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~ 220 (1237)
..+|.-.+.|+. . ..- ....|.-...... |.+..+.++..+|+||++|+++++++++.+ .++|.+|++
T Consensus 51 ~~~~~~~~~~~~---~-~~~--~~~~f~~~~~~~~---p~~~~~~~~~~~l~nGl~vl~i~~~~~~~~---~~~f~vg~~ 118 (1193)
T 3s5m_A 51 KAVMSKTPEWIH---E-KSP--KHNSYDIIEKRYN---EEFKMTYTVYQHKKAKTQVISLGTNDPLDV---EQAFAFYVK 118 (1193)
T ss_dssp ------CCGGGG---G-GSC--CCTTEEEEEEEEE---TTTTEEEEEEEETTTCCEEEEEEECCTTCC---CEEEEEEEE
T ss_pred HHHCCCCCHHHH---C-CCC--CCCCEEEEEECCC---CCCCCCCEEEEECCCCCEEEEEECCCCCEE---EEEEEEEEC
T ss_conf 433048813653---3-577--6588689984058---876665269999799988999998998707---899999978
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCHH------HHHH--CCCEEEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999899999999843997736------5861--2971779824755999999279988876363999999999987
Q 000890 221 DEEDDEQGIAHMIEHVAFLGSKKRE------KLLG--TGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIA 292 (1237)
Q Consensus 221 ~e~~~~~G~ahllehml~~Gt~~~~------~l~~--~G~~~na~t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~ 292 (1237)
.|++++.|+||++|||+|+||++|+ .++. +|+.+||+|+.|+|+|++++++ .++|+.+|++++|++
T Consensus 119 tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~------~~~l~~~L~l~~D~v 192 (1193)
T 3s5m_A 119 TLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMN------NKDFFNIMGVYMDSV 192 (1193)
T ss_dssp CCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESS------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEECC------HHHHHHHHHHHHHHH
T ss_conf 99999711999999998379989885669999997544824876876875999999457------888999999999998
Q ss_pred CCCCCCHHH--HHHH-----------------------------HHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 199999489--9999-----------------------------999999999405-94878999999974048999999
Q 000890 293 FHPKFLSSR--VEKE-----------------------------RRAILSELQMMN-TIEYRVDCQLLQHLHSENKLSKR 340 (1237)
Q Consensus 293 ~~p~f~~~~--~~~e-----------------------------r~~v~~e~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 340 (1237)
++|.|++++ |.+| |++|++|+++.. ++..++...+...+|++++|+ +
T Consensus 193 ~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~-~ 271 (1193)
T 3s5m_A 193 FQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKYMFPDNVHS-N 271 (1193)
T ss_dssp HSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHHHHHHHCTTSGGG-S
T ss_pred HCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC-C
T ss_conf 587876321102245666543111001101222222221004589999999997558999999999999857999998-8
Q ss_pred CCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999888624679999999981045787199999269985789999998836999999889889999743233222234
Q 000890 341 FPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSAFGAMANFLV 420 (1237)
Q Consensus 341 ~~~G~~~~i~~~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 420 (1237)
+++|++++|.++|+++|++||++||+|+||+|+++||+++ ++++++++++|+.|+.+........+.+. .
T Consensus 272 ~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~---------~ 341 (1193)
T 3s5m_A 272 NSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNP-TELLNFVDQYLGQLDYSKYRDDAVESVEY---------Q 341 (1193)
T ss_dssp CTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCT-HHHHHHHHHHHTTCCGGGCCCCCCCCCCC---------C
T ss_pred CCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCC---------C
T ss_conf 9999999985189999999999860956669999926889-99999999986058877777666666677---------7
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHH-HHCCCCCCCCCCCCCCCCC---CCC---------------C--C-----CCCC
Q ss_conf 55445899997655677863026886-4103579983223446899---988---------------8--8-----7533
Q 000890 421 PKLSVGLPGSLSHERSSNSDQSKLIR-RERHAVRPPVEHNWSLSGS---GAD---------------I--P-----VNKV 474 (1237)
Q Consensus 421 p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~p~~---~~~---------------~--~-----~~~~ 474 (1237)
|. ..+. ....+.. ......++.+.++|.+|.. ..+ + + ....
T Consensus 342 ~~----~~~~---------~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 408 (1193)
T 3s5m_A 342 TY----KKGP---------FYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLE 408 (1193)
T ss_dssp BC----CCCC---------EEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCC
T ss_pred CC----CCCC---------EEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87----7888---------6999946899986513899999826754444453223443100011111233211122456
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCEEEEEE-EECCCC--------H-HHHHHH
Q ss_conf 43789999999999999999999986201899904753-256765565530999999-926886--------9-999999
Q 000890 475 RTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVE-MDHSDSGREGCTVTTLTV-TAEPKN--------W-QSAVRV 543 (1237)
Q Consensus 475 ~~~~~~~~~l~~~l~~~~l~~rl~~~l~~~~~~~~~~~-~~~~~~g~~~~~~~~i~~-~~~~~~--------~-~~a~~~ 543 (1237)
.....+.-.++..++.+..++||++.+++ .+.+++++ +++.+.... +.|.+.+ ++.+++ . +++.+.
T Consensus 409 ~~~d~~al~vL~~iLggg~sSrL~~~L~e-~gLa~~v~~~~~~~~~~~--~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~ 485 (1193)
T 3s5m_A 409 NPTDYFVLLIINNLLIHTPESVLYKALTD-CGLGNNVIDRGLNDSLVQ--YIFSIGLKGIKRNNEKIKNFDKVHYEVEDV 485 (1193)
T ss_dssp SHHHHHHHHHHHHHHHSSTTSHHHHHHHH-HCSCSEEEEEEEECSSSS--CEEEEEEEEECTTCTTCSCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHH-CCCEEEECCCCCCCCCCC--CEEEEEEECCCHHHCCCCCHHHHHHHHHHH
T ss_conf 86279999999999779998779999996-698035466545655678--689999965783431453102489999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHH---HHHHHHHHCCC--
Q ss_conf 9999999998699999999999999999999998430679701368999852079801694778---99999984899--
Q 000890 544 AVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQG---HASLVAVAGTI-- 618 (1237)
Q Consensus 544 i~~el~~l~~~git~~El~~ak~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~v-- 618 (1237)
|.++|++++++||+++||+++++++..++.. .+ ..+..++.. +..+...|.+.+++.. +....+.++..
T Consensus 486 I~~~L~~l~~~gi~~~ele~a~~~le~~~re----~~-~~~~~gl~~-~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~ 559 (1193)
T 3s5m_A 486 IMNALKKVVKEGFNKSAVEASINNIEFILKE----AN-LKTSKSIDF-VFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIK 559 (1193)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----HT-TSTTHHHHH-HHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH----CC-CCCCCHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999987298999999999999998775----13-799709999-99987887807998998778999999999861
Q ss_pred -CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC--------CCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf -9999999999898753037999999873699831564223688--------8755558967999999802378878898
Q 000890 619 -TLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKKVHIDGI--------GETEFKISPNEIVDAIKSGMEEPIEAEP 689 (1237)
Q Consensus 619 -T~edi~~~a~k~l~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~--------~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 689 (1237)
.++++++++++||. . ++|.+++++.|+..+.+.. ......++++++.+++++.. .+..++
T Consensus 560 ~~~~~~~~li~~yll-------~--n~~~~~~~~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~--~L~~~q 628 (1193)
T 3s5m_A 560 NEPMYLEKFVEKHFI-------N--NAHRSVILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFE--ELSKYK 628 (1193)
T ss_dssp HSTTHHHHHHHHHTT-------T--CCCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHC-------C--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHH
T ss_conf 084999999999833-------4--99638999972887778999999999999986389999999999999--999987
Q ss_pred CCCCCCCC---CCHHHHHHHHHCCCCCCCCCCCCCC----------CEE---------------------CCC--CCC--
Q ss_conf 65677223---5345899987306998889998874----------100---------------------025--888--
Q 000890 690 ELEVPKEL---ISASELEELKLRCRPSFIPPRPELN----------VTK---------------------VHD--KES-- 731 (1237)
Q Consensus 690 ~~~~p~~l---~~~~~~~~l~~~~~~~~~p~~~~~~----------~~~---------------------~~~--~~~-- 731 (1237)
+.+..++. ++...+.++ +.-.+..+... +.+ ... .+.
T Consensus 629 ~~~~~~e~l~~lP~l~~~Di-----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1193)
T 3s5m_A 629 NAEESPEHLNKFPIISISDL-----NKKTLEVPVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHN 703 (1193)
T ss_dssp HCCCCHHHHTTSCCCCGGGS-----CSSCCCCCCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-----
T ss_pred HCCCCHHHHHHCCCCCHHHC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 37797546974784709876-----8876667630112222211221000111111111122211000000001222222
Q ss_pred -----C---E-----EEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf -----8---4-----99993499589997268988607999998888778786531025788898850776899999999
Q 000890 732 -----G---I-----TQLRLSNGIPINYKISKSEAQGGVMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVGKFSREQV 798 (1237)
Q Consensus 732 -----~---i-----~~~~L~NGi~v~~~~~~~~~~~v~i~l~~~~G~~~e~~~~~G~a~l~~~~l~~gg~~~~~s~~~l 798 (1237)
. . .+.+..||++|++++. ++++++|++++|+.|. .+.+..+++.++..++.+-| ++++++.++
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~-~TNGIvY~~l~fdl~~--l~~e~l~yl~Lf~~~L~~lG-T~~~sy~el 779 (1193)
T 3s5m_A 704 TNNNNNNNNNMDYSFTETKYEGNVPILVYEM-PTTGIVYLQFVFSLDH--LTVDELAYLNLFKTLILENK-TNKRSSEDF 779 (1193)
T ss_dssp ----------------CCTTTTCEEEEEEEC-CCTTEEEEEEEEECTT--CCHHHHTTHHHHHHHTTTCC-BSSSCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-CCCCEEEEEEEEECCC--CCHHHHHHHHHHHHHHHHCC-CCCCCHHHH
T ss_conf 2322222332222221113449837999987-9998699999987999--99788756999999998479-999999999
Q ss_pred HHHHHCCE--EEEEEECCC--------C----EEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHH
Q ss_conf 99984150--134421275--------1----58989999619203999999999998458999899-999999999999
Q 000890 799 ELFCVNHL--INCSLESTE--------E----FIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDA-FDRARQLYLSYY 863 (1237)
Q Consensus 799 ~~~~~~~~--~~~~~~t~~--------~----~~~~~~~~~~~~~~l~~aL~ll~~~l~~p~f~~~~-l~~~k~~~~~~~ 863 (1237)
...+...+ ++++..... + .-.+.+++.++.++++.+|+|+.+++.+|+|++.+ +....+..++.+
T Consensus 780 ~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~l 859 (1193)
T 3s5m_A 780 VILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGM 859 (1193)
T ss_dssp HHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999858855887665036554455665565646999999744269999999999985799996899999999999988
Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCCCC--C-C-------------CHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 808689689999999999806999999--9-9-------------97688404989999999966159971999984899
Q 000890 864 RSIPKSLERSTAHKLMLAMLNGDERFV--E-P-------------TPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFS 927 (1237)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-g-------------t~~~i~~lt~e~l~~~~~~~~~~~n~~lvIvGd~d 927 (1237)
.+...+..+.++.....+.+...+++. . | ..++++.+ .++|.+++++.|.++|+.+.|+|+.+
T Consensus 860 e~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~ 938 (1193)
T 3s5m_A 860 KTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYG 938 (1193)
T ss_dssp HHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGG
T ss_pred HHCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCEEEEEEECHH
T ss_conf 73142466899999999864750223442078579999999998667559999-99999999998187883999994765
Q ss_pred -HHHHHHHHHHHHCCCCCC----CCC----CC---CCCCCCCC--C--CCCCCCCCCEEEEECCCCCCEEEEEECCCCCC
Q ss_conf -889999999962335788----988----77---67667864--5--88998876216883077644067984378998
Q 000890 928 -EEEIESCILDYLGTVRAT----NDS----KR---EHEYSPIL--F--RPSPSDLHFQQVFLKDTDERACAYIAGPAPNR 991 (1237)
Q Consensus 928 -~e~i~~~i~~~lg~l~~~----~~~----~~---~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~a~v~i~~~~p~~ 991 (1237)
.+++.+.++++++.|+.. ... .. ........ + .............+.......++..+++...
T Consensus 939 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~- 1017 (1193)
T 3s5m_A 939 ALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFK- 1017 (1193)
T ss_dssp GTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSC-
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCC-
T ss_conf 6999999999999751210255664322222334454433222222332223555555506742786469999724777-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCEEE
Q ss_conf 775457864323346888788999970113445544467765320397327899999999999-9999998731498133
Q 000890 992 WGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIIN-SRLFTTVRDSLGLTYD 1070 (1237)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lL~~il~-srL~~~lRek~glaYs 1070 (1237)
..+|+++ .+.+|..+|+ ++||.+|||+ |++||
T Consensus 1018 --------------------------------------------~~~~d~~--al~Vl~~iLg~~~L~~eIREk-gGAYg 1050 (1193)
T 3s5m_A 1018 --------------------------------------------PGEYLDP--SFTVIVAALKNSYLWDTVRGL-NGAYG 1050 (1193)
T ss_dssp --------------------------------------------TTCBCCT--HHHHHHHHHHHTHHHHHHTTT-TCCSE
T ss_pred --------------------------------------------CCCCCHH--HHHHHHHHHCCCHHHHHHHHC-CCEEE
T ss_conf --------------------------------------------7987609--999999997824779999761-87268
Q ss_pred EEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8666503466885189999965954389999999999995540--99999999999999999999984435689999998
Q 000890 1071 VSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHS--NRIVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAH 1148 (1237)
Q Consensus 1071 v~~~~~~~~~~~~g~~~i~~~~~p~~~~~~i~~i~~~l~~l~~--~~it~~ELe~aK~~l~~~~~~~~~s~~~~~~~l~~ 1148 (1237)
+++++. ..|.|.++++++| +..++++.+.++++.+.+ .++|++||+++|..+++++. ...++...+..+..
T Consensus 1051 ~~s~~~-----~~G~f~~~syrdp-~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d-~p~~p~~~a~~~~~ 1123 (1193)
T 3s5m_A 1051 VFADIE-----YDGSVVFLSARDP-NLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTID-KPRRGIELSKLSFL 1123 (1193)
T ss_dssp EEEEEC-----TTSEEEEEEESBS-CSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHS-CCCCTHHHHHHHHH
T ss_pred EEEECC-----CCCCEEEEEEECC-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHH
T ss_conf 877616-----7886799998079-8799999999999999963589899999999999983666-66896999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCC---CCCEEEEEEECCCCCCC
Q ss_conf 731889998645676499998505999999999873578---99519998106898898
Q 000890 1149 LQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVD---EDSLYSCIGIAGAQAGD 1204 (1237)
Q Consensus 1149 ~~~~~l~~~~~~~~~~~~~~i~~vT~edI~~~a~~~~~~---~~~~~~~vG~~~~~~~~ 1204 (1237)
.+.++++. ++++++.+.|.+||++||++++++|+.. ++..++++|..+.+.+.
T Consensus 1124 ~~~~Gl~~---d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvvG~~~~i~~~ 1179 (1193)
T 3s5m_A 1124 RLISNESE---QDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVIITTKEKANEY 1179 (1193)
T ss_dssp HHHTTCCH---HHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEEECHHHHHHH
T ss_pred HHHCCCCH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH
T ss_conf 99819599---999999999980999999999999851321367369998588885357
No 4
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=1.00 E-value=1 Score=679.81 Aligned_cols=866 Identities=13% Similarity=0.122 Sum_probs=593.6
Q ss_pred CCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH-------HHHCC
Q ss_conf 99999972899805995999977799984489999980457899999998999999998439977365-------86129
Q 000890 179 ELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREK-------LLGTG 251 (1237)
Q Consensus 179 ~~~~~p~~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~~-------l~~~G 251 (1237)
+....+.++.++|+|||+|++++++..+. +.+.++|++|+++||+++.|+||++|||+|+||++|+. ++.+|
T Consensus 28 ~~~d~~~~~~~~L~NGl~v~~~~~~~~~~-~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~G 106 (990)
T 3cww_A 28 SPEDKREYRGLELANGIKVLLISDPTTDK-SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHA 106 (990)
T ss_dssp CTTCCCEEEEEEETTCCEEEEEECTTCSE-EEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCEEEEEECCCCCC-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
T ss_conf 98887555999947998899997889981-78999955258779999997399999988068877998056999999769
Q ss_pred CEEEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Q ss_conf 717798247559999992799888763639999999999871999994899999999999999405-9487899999997
Q 000890 252 ARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMN-TIEYRVDCQLLQH 330 (1237)
Q Consensus 252 ~~~na~t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~-~~~~~~~~~~~~~ 330 (1237)
+.+||+|+.|+|+|++++++ ++|+.+|++++|++++|.|++++|++||++|.+|+++.. ++..++...+...
T Consensus 107 g~~NA~T~~d~T~y~~~~~~-------~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~ 179 (990)
T 3cww_A 107 GSSNAFTSGEHTNYYFDVSH-------EHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKAT 179 (990)
T ss_dssp CEEEEEECSSCEEEEEEEEG-------GGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCEEEEEEECH-------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 95068988984599999378-------99999999999998575899899999999999999855388399999999985
Q ss_pred HCCCCCCCCCCCCCCHHHHCCC-------CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4048999999999998886246-------799999999810457871999992699857899999988369999998898
Q 000890 331 LHSENKLSKRFPIGLEEQIKKW-------DADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETAS 403 (1237)
Q Consensus 331 l~~~~~~~~~~~~G~~~~i~~~-------t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~~~ 403 (1237)
++++++|+ ++++|++++|.++ ++++|++||++||+|+||+|+|+||++. ++++++++++|+.|+.+..+.+
T Consensus 180 ~~~~~py~-~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~-~~~~~~i~~~f~~~~~~~~~~~ 257 (990)
T 3cww_A 180 GNPKHPFS-KFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESL-DDLTNLVVKLFSEVENKNVPLP 257 (990)
T ss_dssp SCTTSGGG-CCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCH-HHHHHHHHHHHTTSCCCCCCCC
T ss_pred CCCCCCCC-CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHEEEEEECCCCH-HHHHHHHHHHHCCCCCCCCCCC
T ss_conf 68999963-478898999840201046529999999999717786638999869999-9999999997137865788899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 89999743233222234554458999976556778630268864103579983223446899988887533437899999
Q 000890 404 ASTPTSSAFGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNV 483 (1237)
Q Consensus 404 ~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 483 (1237)
.. +.+ |.. . ......+.......++.+.++|..|....+... .. ..+.+.
T Consensus 258 ~~-~~~-----------~~~----~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~-~~~l~~ 307 (990)
T 3cww_A 258 EF-PEH-----------PFQ----E----------EHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKS---NP-GHYLGH 307 (990)
T ss_dssp CC-CSC-----------SSC----G----------GGSSEEEEECCSSSCCEEEEEEEECCCGGGTTT---CH-HHHHHH
T ss_pred CC-CCC-----------CCC----H----------HHCCEEEEEEECCCCCEEEEEEECCCHHHHHHH---CH-HHHHHH
T ss_conf 88-889-----------999----6----------780769999987877489999976880565555---88-999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECC---CCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9999-99999999999862018999047532567655655309999999268---8699999999999999998699999
Q 000890 484 LMKR-IFLSALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEP---KNWQSAVRVAVQEVRRLKEFGVTNG 559 (1237)
Q Consensus 484 l~~~-l~~~~l~~rl~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~---~~~~~a~~~i~~el~~l~~~git~~ 559 (1237)
++++ ...+.+ ..+++ .+++|++++++.... ...+.|.+++.+.+ ++++++++.+.++|++++++||+++
T Consensus 308 lLg~~~~~sl~-----~~Lr~-~g~~~~~~a~~~~~~-~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~ 380 (990)
T 3cww_A 308 LIGHEGPGSLL-----SELKS-KGWVNTLVGGQKAGA-RGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEW 380 (990)
T ss_dssp HHTCCSTTCHH-----HHHHH-TTSCSCEEEEEEEEE-TTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHCCCCCCCHH-----HHHHH-CCCCCEEEECCCCCC-CCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 95699999489-----99987-797112565356677-885179999998847765499999999999999985798389
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999843067970136899985207980169477899999984899999999999989875303799
Q 000890 560 ELTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGR 639 (1237)
Q Consensus 560 El~~ak~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~ 639 (1237)
|+++++......+ ...+.......+..+...+ . ..+.+....+.+.+.++|+++|+++++++.
T Consensus 381 ~l~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~-~----~~~~~~~~~~~~~i~~~t~~~i~~~~~~l~-------- 443 (990)
T 3cww_A 381 VFQELKDLNAVAF----RFKDKERPRGYTSKIAGIL-H----YYPLEEVLTAEYLLEEFRPDLIEMVLDKLR-------- 443 (990)
T ss_dssp HHHHHHHHHHHHH----HTCCCCCHHHHHHHHHHHT-T----TSCGGGTTTTTTCCCCCCHHHHHHHHTTCS--------
T ss_pred HHHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHH-H----HCCHHHHHCCCHHHHCCCHHHHHHHHHHCC--------
T ss_conf 9999999999736----6677699799999999998-6----279999732622453189999999998469--------
Q ss_pred CCCCCCCEEEEECCCCCCCCCCC------C-CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 99998736998315642236888------7-5555896799999980237887889865677223534589998730699
Q 000890 640 PSAPVPAAIVACVPKKVHIDGIG------E-TEFKISPNEIVDAIKSGMEEPIEAEPELEVPKELISASELEELKLRCRP 712 (1237)
Q Consensus 640 ~~~~~~~~~~~~~P~~~~~~~~~------~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~l~~~~~~ 712 (1237)
+++..+++++|+........ . ....+++ +..+.|.+.... +. ...|.. .
T Consensus 444 ---~~~~~~~~~~p~~~~~~~~~e~~~~~~y~~~~~~~-~~~~~~~~~~~~---~~--~~~p~~---------------~ 499 (990)
T 3cww_A 444 ---PENVRVAIVSKSFEGKTDRTEEWYGTQYKQEAIPD-AVIAKWQNAALN---GK--FKLPTK---------------N 499 (990)
T ss_dssp ---GGGCEEEEECGGGTTCCCEECTTTCCEEEEEECCH-HHHHHHHTCCCC---TT--CCCCCC---------------C
T ss_pred ---HHHEEEEEECCCCCCCCCCCCCEECCEEEEECCCH-HHHHHHHCCCCC---CC--CCCCCC---------------C
T ss_conf ---76779999737777776733316376215623899-999976457887---45--569998---------------8
Q ss_pred CCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEECC-CCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 88899988741000258888499993499589997268-98860799999888877878653102578889885077689
Q 000890 713 SFIPPRPELNVTKVHDKESGITQLRLSNGIPINYKISK-SEAQGGVMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVG 791 (1237)
Q Consensus 713 ~~~p~~~~~~~~~~~~~~~~i~~~~L~NGi~v~~~~~~-~~~~~v~i~l~~~~G~~~e~~~~~G~a~l~~~~l~~gg~~~ 791 (1237)
.|+|..-.....+...... ....+++||++|++++++ +..+...+.+.+..|...++++..+++.++..++..+
T Consensus 500 ~~ip~~~~~~~~~~~~~~~-p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---- 574 (990)
T 3cww_A 500 EFIPTNFEILPLEAAATPY-PALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---- 574 (990)
T ss_dssp TTCCCCCCCCCCCTTCCSS-CEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH----
T ss_pred CCCCCCCCCCCCCCCCCCC-CEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH----
T ss_conf 7788665004577788899-95654388716755168765788689999996897779999999999999999999----
Q ss_pred CCCHHHHHHHHHCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC-CH
Q ss_conf 99999999998415013442127515898999961920399999999999845899989999999999999980868-96
Q 000890 792 KFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPK-SL 870 (1237)
Q Consensus 792 ~~s~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~aL~ll~~~l~~p~f~~~~l~~~k~~~~~~~~~~~~-~~ 870 (1237)
++..++...+.| +++++..+.+.+. +++++..++++.+|+++.+++.+|.|+++.|+++|+.++..+++... ++
T Consensus 575 -~~~~~~~~~l~G--~~~~~~~~~~~~~--~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p 649 (990)
T 3cww_A 575 -LNEYAYAAELAG--LSYDLQNTIYGMY--LSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQP 649 (990)
T ss_dssp -HHHHHHHHHHTT--EEEEEEEETTEEE--EEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred -HHHHHHHHHHCC--EEEEEEECCCEEE--EEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf -878644898687--4899997687599--99984218689999999999865898999999999999999886662485
Q ss_pred HHHHHHHHHHHHHCCCCCCC-CCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---HHHHHCCCCCCC
Q ss_conf 89999999999806999999-99976884049899999999661599719999848998899999---999623357889
Q 000890 871 ERSTAHKLMLAMLNGDERFV-EPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESC---ILDYLGTVRATN 946 (1237)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~-~gt~~~i~~lt~e~l~~~~~~~~~~~n~~lvIvGd~d~e~i~~~---i~~~lg~l~~~~ 946 (1237)
. .++......++++ +++. .++.+.|++++.++|.+|++++|.+.+++++|+||++.+++.++ +.++|+.++...
T Consensus 650 ~-~~a~~~~~~~l~~-~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~ 727 (990)
T 3cww_A 650 H-QHAMYYLRLLMTE-VAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTK 727 (990)
T ss_dssp H-HHHHHHHHHHHBS-SCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCE
T ss_pred H-HHHHHHHHHHHCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9-9999999999678-9999999999885299999999999998641189999758899999999999999983467778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEE--CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 887767667864588998876216883--077644067984378998775457864323346888788999970113445
Q 000890 947 DSKREHEYSPILFRPSPSDLHFQQVFL--KDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMML 1024 (1237)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~v~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1237)
............+.. +. . ...++. .....++++.+++..+. +
T Consensus 728 ~~~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~v~~~~~~~~-~-------------------------------- 771 (990)
T 3cww_A 728 PLLPSQLAAYREVQL-PD-R-GWFVYQQRNEVHNNSGIEIYYQTDM-Q-------------------------------- 771 (990)
T ss_dssp ECCGGGCCCCCBBCC-CT-T-EEEEEEEECSSCSSEEEEEEEEEEE-C--------------------------------
T ss_pred CCCHHHCCCCCEEEC-CC-C-CEEEEEECCCCCCCCEEEEEEECCC-C--------------------------------
T ss_conf 874333133544883-89-9-8699970688888837999996799-9--------------------------------
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 54446776532039732789999999999999999987314981338666503466885189999965954389999999
Q 000890 1025 KDIEKDQQRKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDAC 1104 (1237)
Q Consensus 1025 ~~~~~~~~~~~~~~p~~~~~~~~lL~~il~srL~~~lRek~glaYsv~~~~~~~~~~~~g~~~i~~~~~p~~~~~~i~~i 1104 (1237)
++++ ...+.+|+.+++++||.+||++.|++|++++.+..........+.+.++++|++++++++.+
T Consensus 772 ------------~~~~--~~~l~ll~~il~~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f 837 (990)
T 3cww_A 772 ------------STSE--NMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAF 837 (990)
T ss_dssp ------------CHHH--HHHHHHHHHHHHHHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHH
T ss_pred ------------CHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf ------------9999--99999999998889999987112775799888786389788999993799999999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 999995540999999999999999999999844-----356899999987318899986456764999985059999999
Q 000890 1105 KNVLRGLHSNRIVQRELDRAKRTLLMRHEAEIK-----SNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYL 1179 (1237)
Q Consensus 1105 ~~~l~~l~~~~it~~ELe~aK~~l~~~~~~~~~-----s~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~i~~vT~edI~~ 1179 (1237)
.+++..+.+ ++|++||+++|..++.++....+ .+.+|...+ ...+.. +..+++.+.++++|++||++
T Consensus 838 ~~~~~~l~~-~~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~----~~~~~~---d~~~~~~~~i~~vT~~di~~ 909 (990)
T 3cww_A 838 LITMEKSIE-DMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEII----SQQYNF---DRDNTEVAYLKTLTKADIIK 909 (990)
T ss_dssp HHHHHHHHH-HSCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHH----TTCCCT---THHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHH-HCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCCCC---CHHHHHHHHHHHCCHHHHHH
T ss_conf 999999998-5699999999999999851799889999999999997----489887---76799999998289999999
Q ss_pred HHHHHCCC-----CCCEEEEEEECCCCC
Q ss_conf 99873578-----995199981068988
Q 000890 1180 AYEQLRVD-----EDSLYSCIGIAGAQA 1202 (1237)
Q Consensus 1180 ~a~~~~~~-----~~~~~~~vG~~~~~~ 1202 (1237)
++++++.. ....++++|......
T Consensus 910 ~a~~~l~~~~~~~~~~~v~v~g~~~~~~ 937 (990)
T 3cww_A 910 FYKEMLAVDAPRRHKVSVHVLAREMDSN 937 (990)
T ss_dssp HHHHHTSTTCTTCEEEEEEEECTTC---
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_conf 9999860368877779999977787533
No 5
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=443.12 Aligned_cols=395 Identities=16% Similarity=0.177 Sum_probs=319.4
Q ss_pred CEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHH------HHHHCCCEEEEEEC
Q ss_conf 289980599599997779998448999998045789999999899999999843997736------58612971779824
Q 000890 186 LYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKRE------KLLGTGARSNAYTD 259 (1237)
Q Consensus 186 ~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~------~l~~~G~~~na~t~ 259 (1237)
+++.+|+||++|++.+++..+. +.+.++|++|+++|++++.|+||++|||+|+||++|+ .++.+|+++||+|+
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~-~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~ 80 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARS-VALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTS 80 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSC-EEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEECCCCCEEEEEECCCCCE-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEC
T ss_conf 6469868999899998799976-999999854257889998889999999871799999989999999984887352644
Q ss_pred CCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7559999992799888763639999999999871999994899999999999999405-948789999999740489999
Q 000890 260 FHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMN-TIEYRVDCQLLQHLHSENKLS 338 (1237)
Q Consensus 260 ~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~-~~~~~~~~~~~~~l~~~~~~~ 338 (1237)
.|+|+|++++++ ++++.+|++++|++ +|.|++++|++||+++++|+++.. ++..++...+...+|++++|+
T Consensus 81 ~d~t~y~~~~~~-------~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 152 (406)
T 3eoq_A 81 EEATVYYGAVLP-------EFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLG 152 (406)
T ss_dssp SSCEEEEEEECG-------GGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGG
T ss_pred CCEEEEEEEECH-------HHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 774899999557-------88999999999985-6899989999999999999987429978999999999843899998
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998886246799999999810457871999992699857899999988369999998898899997432332222
Q 000890 339 KRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSAFGAMANF 418 (1237)
Q Consensus 339 ~~~~~G~~~~i~~~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~p~~~~~~~~~ 418 (1237)
++++|++++|+++|.++|++||++||+|+||+|+|+||+++ ++++++++++|++|+.++.+.+. +..
T Consensus 153 -~~~~G~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~-~~~~~~i~~~f~~~~~~~~~~~~--~~~--------- 219 (406)
T 3eoq_A 153 -NSVLGTRESITALTREGMAAYHRRRYLPKNMVLAATGRVDF-DRLLAEAERLTEAWPEGEAERAY--PPL--------- 219 (406)
T ss_dssp -CCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCH-HHHHHHHHHHHTTCCCCCCCCCC--CCC---------
T ss_pred -CCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHHHCCCCCCCCCCCC--CCC---------
T ss_conf -88868999996389999999999848866779999848999-99999999983578878889888--987---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 345544589999765567786302688641035-7998322344689998888753343789999999999999999999
Q 000890 419 LVPKLSVGLPGSLSHERSSNSDQSKLIRRERHA-VRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSALHFRI 497 (1237)
Q Consensus 419 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~rl 497 (1237)
. +. .+. +....+. .++.+.++|+.|...++ + .....++..++.+.+++||
T Consensus 220 ------~--~~----------~~~--~~~~~~~~~q~~~~~~~~~~~~~~~------d---~~~l~vl~~iLgg~~~srL 270 (406)
T 3eoq_A 220 ------T--PA----------FGV--EERPYEKARALYLVALFPGVAYQEE------A---RFPGQVLAHLLGEEGSGRL 270 (406)
T ss_dssp ------C--CC----------CEE--EEEECTTCSSEEEEEEEECCCTTCT------T---HHHHHHHHHHHHCTTTSHH
T ss_pred ------C--CC----------CCE--EEEECCCCCCEEEEEEECCCCCCCC------H---HHHHHHHHHHHCCCCCHHH
T ss_conf ------8--88----------846--9983687350589999447998881------1---9999999999679962488
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98620189990475325676556553099999992688699999999999999998699999999999999999999998
Q 000890 498 NTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAA 577 (1237)
Q Consensus 498 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~a~~~i~~el~~l~~~git~~El~~ak~~l~~~~~~~~~ 577 (1237)
++.+|+ .+++|++++.+... ...+.|.+++++.+++++++++.+.++|++++++||+++||+++|+.++.++. .
T Consensus 271 ~~~lre-~gl~y~~~s~~~~~--~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~---~ 344 (406)
T 3eoq_A 271 HFALVD-KGLAEVASFGLEEA--DRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLV---F 344 (406)
T ss_dssp HHHTTT-TTSEEEEEEEEEEC--SSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHH-CCCEEEEEEEECCC--CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---H
T ss_conf 999997-59746999874056--78637999998473329999999999999998579999999999999997787---7
Q ss_pred HHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
Q ss_conf 43067970136899985207980169477899999984899999999999989875303799999987369983156
Q 000890 578 MIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPK 654 (1237)
Q Consensus 578 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~~~~~~~~~~P~ 654 (1237)
..++..+ ++..+.....+.++..+++++.+.|.+||++||++++++||. +++. +++++|.
T Consensus 345 ~~e~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~----------~~~~-~~vvGp~ 404 (406)
T 3eoq_A 345 AGETPMQ------RLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFL----------EKGL-YYLVLPH 404 (406)
T ss_dssp HTTSHHH------HHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTTT----------TSCE-EEEEECC
T ss_pred HCCCHHH------HHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCC----------CCCE-EEEECCC
T ss_conf 3478999------999999999966998999999999982899999999998658----------5667-9997898
No 6
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=1.00 E-value=1 Score=430.29 Aligned_cols=407 Identities=18% Similarity=0.222 Sum_probs=324.0
Q ss_pred CCCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHH------HHHHCCCEEEEE
Q ss_conf 97289980599599997779998448999998045789999999899999999843997736------586129717798
Q 000890 184 PKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKRE------KLLGTGARSNAY 257 (1237)
Q Consensus 184 p~~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~------~l~~~G~~~na~ 257 (1237)
|.+++.+|+||++|++.+++..+. +.+.++|++|+++|++++.|+||++|||+|+||++|+ .++.+|+++||+
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~-v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~ 83 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPT-LVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAF 83 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSE-EEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEE
T ss_pred CCCEEEECCCCCEEEEEECCCCCE-EEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 671799979999899997799986-9999998455678898895389999870108998898778999999829863301
Q ss_pred ECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HCC-CHHHHHHHHHHHHHCCCC
Q ss_conf 247559999992799888763639999999999871999994899999999999999-405-948789999999740489
Q 000890 258 TDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQ-MMN-TIEYRVDCQLLQHLHSEN 335 (1237)
Q Consensus 258 t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~-~~~-~~~~~~~~~~~~~l~~~~ 335 (1237)
|+.|+|+|++++++ ++++.+|++++|++.+|.|++++|++||+++++|++ ... ++..++...+...+|+++
T Consensus 84 t~~d~t~y~~~~~~-------~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~ 156 (445)
T 3ami_A 84 TTRDYTAYYQQVPS-------SRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAH 156 (445)
T ss_dssp ECSSCEEEEEEEEG-------GGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSS
T ss_pred CCCCEEEEEEECCH-------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 47985799997888-------99999999999996189999899999999999999854458847999999999860589
Q ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999998886246799999999810457871999992699857899999988369999998898899997432332
Q 000890 336 KLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSAFGAM 415 (1237)
Q Consensus 336 ~~~~~~~~G~~~~i~~~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~p~~~~~~ 415 (1237)
+|+ ++++|++++|+++|.++|++||++||+|+||+|+|+||+++ ++++++++++|+.|+.+..+.+.....|
T Consensus 157 p~~-~~~~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~------ 228 (445)
T 3ami_A 157 PYR-VPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEH-EAVFRLAEQTYGKLARVEAPARKQQGEP------ 228 (445)
T ss_dssp GGG-SCTTCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCH-HHHHHHHHHTGGGSCCCCCCCCCCCCCC------
T ss_pred CCC-CCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCCC------
T ss_conf 877-99888999986579999999999718855669999828999-9999999998437988889987778898------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2223455445899997655677863026886410357998322344689---9988887533437899999999999999
Q 000890 416 ANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSG---SGADIPVNKVRTYGDLRNVLMKRIFLSA 492 (1237)
Q Consensus 416 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 492 (1237)
. ..+ .+ ......+..++.+.++|..|. ... ........++..++.+.
T Consensus 229 ---------~-~~~----------~~--~~~~~~~~~~~~v~l~~~~~~~~~~~~--------~~~~~~~~vl~~iLg~~ 278 (445)
T 3ami_A 229 ---------Q-QAG----------VR--RVTVKAPAELPYLALAWHVPAIVDLDK--------SRDAYALEILAAVLDGY 278 (445)
T ss_dssp ---------C-CCS----------CE--EEEEEEECSSCEEEEEEEECCCSSTTC--------CHHHHHHHHHHHHHHSS
T ss_pred ---------C-CCC----------CE--EEEEECCCCCCEEEEEEECCCCCCCCC--------CHHHHHHHHHHHHHCCC
T ss_conf ---------8-778----------65--899856877637999997687212568--------83299999999998077
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCC-CCEEEEEEEECCCC-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999999862018999047532567655655-30999999926886-9999999999999999869999999999999999
Q 000890 493 LHFRINTRYKSSNPPFTSVEMDHSDSGREG-CTVTTLTVTAEPKN-WQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLK 570 (1237)
Q Consensus 493 l~~rl~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~i~~~~~~~~-~~~a~~~i~~el~~l~~~git~~El~~ak~~l~~ 570 (1237)
.++||++.+++..+++|++++++.... .. .+.|.+++.+.+++ ++++++.+.++|++++++||+++||+++|+.++.
T Consensus 279 ~~srL~~~lre~~gl~y~v~~~~~~~~-~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~ 357 (445)
T 3ami_A 279 DGARMTRQLVRGNKHAVSAGAGYDSLS-RGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVA 357 (445)
T ss_dssp TTCHHHHHTTTTSCCEEEEEEECCCCC-SSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCC-CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 235789998525885799985012334-5789759999997999999999999999999998539899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
Q ss_conf 99999984306797013689998520798016947789999998489999999999998987530379999998736998
Q 000890 571 DSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVA 650 (1237)
Q Consensus 571 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~~~~~~~~ 650 (1237)
++ ....++. ... +..+......+.+.++...+.+.|++||++||++++++||. +++..+++
T Consensus 358 ~~---~~~~~~~--~~~----~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~----------~~~~~~~~ 418 (445)
T 3ami_A 358 GK---VYEQDSL--MGQ----ATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLT----------DDTLTVAN 418 (445)
T ss_dssp HH---HHTTTSH--HHH----HHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSC----------STTEEEEE
T ss_pred HH---HHHHHCH--HHH----HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCC----------CCCEEEEE
T ss_conf 99---9974478--999----99999999817986789999999974999999999999718----------57739999
Q ss_pred ECCCCC
Q ss_conf 315642
Q 000890 651 CVPKKV 656 (1237)
Q Consensus 651 ~~P~~~ 656 (1237)
++|++.
T Consensus 419 ~~p~~~ 424 (445)
T 3ami_A 419 LVPLPP 424 (445)
T ss_dssp EEEECC
T ss_pred ECCCCC
T ss_conf 756765
No 7
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=1.00 E-value=1 Score=424.63 Aligned_cols=435 Identities=18% Similarity=0.242 Sum_probs=321.7
Q ss_pred CCCCCCCCCEEEECCCCCEEEEEECCCCC-CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH----------
Q ss_conf 89999997289980599599997779998-4489999980457899999998999999998439977365----------
Q 000890 178 AELPSHPKLYRGQLRNGLRYLILPNKVPA-SRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREK---------- 246 (1237)
Q Consensus 178 ~~~~~~p~~~~~~L~NGl~v~~~~~~~~~-~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~~---------- 246 (1237)
.+++.+|.+++++|+||++|++++++..+ ..+.+.++|++|++.|++++.|+|||+|||+|+||++++.
T Consensus 18 ~~l~~dp~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~ 97 (492)
T 3go9_A 18 EALQPDPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQG 97 (492)
T ss_dssp CCCCBCTTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTC
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 77899987279999999989999788888886999999922557889997679999999983288899978999999997
Q ss_pred HHHCCCEEEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-HHHHHHH
Q ss_conf 861297177982475599999927998887636399999999998719999948999999999999994059-4878999
Q 000890 247 LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNT-IEYRVDC 325 (1237)
Q Consensus 247 l~~~G~~~na~t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~-~~~~~~~ 325 (1237)
++.+|+.+||+|+.|+|+|++++++.. .++++.+|++++|++.+|.|++++|++||+++++++++..+ +....+.
T Consensus 98 ~~~~G~~~na~t~~d~t~y~~~~~~~~----~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~~ 173 (492)
T 3go9_A 98 IDNERPLPPAITSYDFTLYSLSLPNNR----PDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWR 173 (492)
T ss_dssp SCSSSCCCSEEECSSCEEEEEEECTTC----HHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHHH
T ss_pred HHHCCCCCCEEECCCEEEEEEECCCCC----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 773189765276788179999778773----8899999999999980798899999999978888998521360137999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99997404899999999999888624679999999981045787199999269985789999998836999999889889
Q 000890 326 QLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASAS 405 (1237)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~G~~~~i~~~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~~~~~ 405 (1237)
..+++. +++.++.++ ++|+++|.++|++||++||+|+||+|+|+||+++ ++++++++++|++|+.+.......
T Consensus 174 ---~~~~~~-~~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~-~~~~~~i~~~f~~~~~~~~~~~~~ 246 (492)
T 3go9_A 174 ---YRLKGS-SLIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDS-RSIAAQISKAFSELKGKRTAPAAV 246 (492)
T ss_dssp ---HHTTTS-TTTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCH-HHHHHHHHHHHTTCCCCCSSCCCC
T ss_pred ---HHHCCC-CCCCCCCCH--HHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf ---874468-745699851--2351499999999999856857648999818999-999999999851698888899888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99974323322223455445899997655677863026886410357998322344689998888753343789999999
Q 000890 406 TPTSSAFGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLM 485 (1237)
Q Consensus 406 ~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~l~ 485 (1237)
+.+ .+ .. ... +...+.+..++.+.++|..|..... ....+..++.
T Consensus 247 -~~~--------------~~-~~----------~~~--~~~~~~~~~q~~v~l~~~~~~~~~~-------d~~~l~~~~~ 291 (492)
T 3go9_A 247 -ATL--------------AP-LP----------PEP--VSLMNEQAAQDTLSLMWDTPWHPIQ-------DSMALSRYWR 291 (492)
T ss_dssp -CCC--------------CC-CC----------SSC--EEEEESSCSSEEEEEEEEEECCCCC-------SHHHHHHHHH
T ss_pred -CCC--------------CC-CC----------CCC--EEEECCCCCCCEEEEEECCCCCCCC-------CHHHHHHHHH
T ss_conf -878--------------88-88----------775--5897378777479999627887765-------4789999999
Q ss_pred HHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 999999999999986201--899904753256765565530999999926886999999999999999986999999999
Q 000890 486 KRIFLSALHFRINTRYKS--SNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTR 563 (1237)
Q Consensus 486 ~~l~~~~l~~rl~~~l~~--~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~a~~~i~~el~~l~~~git~~El~~ 563 (1237)
..++.++|..|++..+++ ..++.|++++++... .. .+.+.+++++++++++++.+.++|++++++|||++||++
T Consensus 292 ~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~--~~--~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~ 367 (492)
T 3go9_A 292 SDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQ--RA--QCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDA 367 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETT--EE--EEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH--HC--CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999999999999742545443468406644--20--238999768300999999999999999973989999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999998430679701368999852079801694778999999848999999999999898753037999999
Q 000890 564 YMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAP 643 (1237)
Q Consensus 564 ak~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~ 643 (1237)
+|+.+++++...+......++...++.++..+..+.....+.++.+.+.+.|.+||++||++++++||. +
T Consensus 368 aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~----------~ 437 (492)
T 3go9_A 368 LMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLS----------Q 437 (492)
T ss_dssp HHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHT----------S
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC----------C
T ss_conf 999999999999998871166999999999986598768999999999998806999999999999848----------9
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 873699831564223688875555896799999980237
Q 000890 644 VPAAIVACVPKKVHIDGIGETEFKISPNEIVDAIKSGME 682 (1237)
Q Consensus 644 ~~~~~~~~~P~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 682 (1237)
+ ..+++++|+.. .....+++.+.|++.+.
T Consensus 438 ~-~~~vvvg~~~~---------~e~~~~~l~~~~~~~~~ 466 (492)
T 3go9_A 438 D-TTLVLMQPKGE---------PEVNVKALQEIYNGIMA 466 (492)
T ss_dssp C-CEEEEEEETTS---------CCCCHHHHHHHHHHHHC
T ss_pred C-CEEEEECCCCC---------CCCCHHHHHHHHHHHHC
T ss_conf 9-71999728888---------77549999999999728
No 8
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=1.00 E-value=1 Score=420.21 Aligned_cols=397 Identities=19% Similarity=0.273 Sum_probs=244.0
Q ss_pred CEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHH------HHHHCCCEEEEEEC
Q ss_conf 289980599599997779998448999998045789999999899999999843997736------58612971779824
Q 000890 186 LYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKRE------KLLGTGARSNAYTD 259 (1237)
Q Consensus 186 ~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~------~l~~~G~~~na~t~ 259 (1237)
+++.+|+||++|++.+++..+. +.+.++|++|+++|++++.|+||++|||+|+||++++ .++.+|+.+||+|+
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~-~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~ 80 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRS-VSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTS 80 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSE-EEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEEC
T ss_pred CEEEECCCCCEEEEEECCCCCE-EEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 6679869998899998799977-999999823457889998867999999862798999999999999984881202435
Q ss_pred CCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7559999992799888763639999999999871999994899999999999999405-948789999999740489999
Q 000890 260 FHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMN-TIEYRVDCQLLQHLHSENKLS 338 (1237)
Q Consensus 260 ~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~-~~~~~~~~~~~~~l~~~~~~~ 338 (1237)
.|+|+|+++++. ++++.+|++++|++++|.|++++|++||+++++|+++.. ++..++...+...+|++++|+
T Consensus 81 ~d~t~~~~~~~~-------~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 153 (421)
T 3hdi_A 81 KEYTCYYAKVLD-------DHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLG 153 (421)
T ss_dssp SSCEEEEEEEEG-------GGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGG
T ss_pred CCEEEEEEEECH-------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 656999999648-------7799999999999868999989999999999999987568888999999999824899999
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998886246799999999810457871999992699857899999988369999998898899997432332222
Q 000890 339 KRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSAFGAMANF 418 (1237)
Q Consensus 339 ~~~~~G~~~~i~~~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~p~~~~~~~~~ 418 (1237)
++.+|++++|++++.++|++||++||+|+||+|+|+||++ ++++++++++|+.|+.+..+.+. ..|
T Consensus 154 -~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~--~~~~~~v~~~f~~~~~~~~~~~~--~~~--------- 219 (421)
T 3hdi_A 154 -YPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH--DELIDKIKETFSQVKPTTYNYQG--EKP--------- 219 (421)
T ss_dssp -SCTTCCHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC--HHHHHHHHHHTTSSCCCCCCCCC--CCC---------
T ss_pred -CCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCC--HHHHHHHHHHHCCCCCCCCCCCC--CCC---------
T ss_conf -9886898999759999999999984484667999980887--99999999983688888888788--988---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34554458999976556778630268864103579983223446899988887533437899999999999999999999
Q 000890 419 LVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSALHFRIN 498 (1237)
Q Consensus 419 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~rl~ 498 (1237)
.. .. . .........++.+.++|+.+....+ ......++..++.+.+++||.
T Consensus 220 ---~~---~~-------------~-~~~~~~~~~q~~v~~~~~~~~~~~~---------d~~~l~vl~~iLgg~~~srL~ 270 (421)
T 3hdi_A 220 ---MF---LP-------------N-RIVRKKETEQAHLCLGYPGLPIGDK---------DVYALVLLNNVLGGSMSSRLF 270 (421)
T ss_dssp ---CC---CC-------------C-EEEEECCCSEEEEEEEEECCCTTCT---------THHHHHHHHHHHTSSSSSHHH
T ss_pred ---CC---CC-------------C-EEEECCCCCCEEEEEEEECCCCCCC---------HHHHHHHHHHHHCCCCCCHHH
T ss_conf ---77---88-------------5-3886078884589999766998981---------699999999996799632799
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86201899904753256765565530999999926886999999999999999986999999999999999999999984
Q 000890 499 TRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAM 578 (1237)
Q Consensus 499 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~a~~~i~~el~~l~~~git~~El~~ak~~l~~~~~~~~~~ 578 (1237)
+.+|+..+++|++++++... ...+.|.+++++.+++++++++.+.++|++++++|++++||+++|+.++.++. ..
T Consensus 271 ~~lRe~~glay~~~s~~~~~--~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~---~~ 345 (421)
T 3hdi_A 271 QDIREKRGLCYSVFSYHSSF--RDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLM---LS 345 (421)
T ss_dssp HHHTTTTCCCSCEEEEEEEC--SSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHCCCEEEEEEEECCC--CCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HC
T ss_conf 99987359779999751466--78836999998088789999999999999998579999999999999999998---70
Q ss_pred HCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
Q ss_conf 30679701368999852079801694778999999848999999999999898753037999999873699831564
Q 000890 579 IDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKK 655 (1237)
Q Consensus 579 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~~~~~~~~~~~~P~~ 655 (1237)
.++..+ . +..+.....+.+..+..+++.+.|.+||++||++++++|+. ++..+++++|..
T Consensus 346 ~e~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~-----------~~~~~~vvgp~~ 405 (421)
T 3hdi_A 346 LESTNS--R----MSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILLS-----------ASPSISLINANG 405 (421)
T ss_dssp TTCHHH--H----HHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHHTT-----------SCCEEEEEESSC
T ss_pred CCCHHH--H----HHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCC-----------CCCEEEEECCHH
T ss_conf 689999--9----99999999966998999999999970899999999999705-----------275899987500
No 9
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=1.00 E-value=1 Score=411.11 Aligned_cols=406 Identities=20% Similarity=0.200 Sum_probs=310.3
Q ss_pred CCCCCCCCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH------HHHCCC
Q ss_conf 99999972899805995999977799984489999980457899999998999999998439977365------861297
Q 000890 179 ELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREK------LLGTGA 252 (1237)
Q Consensus 179 ~~~~~p~~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~~------l~~~G~ 252 (1237)
|++.+|.++..+|+||++|++.+++. +. +.+.++|++|++.|++++.|+||++|||+|+||++++. ++.+|+
T Consensus 7 ~~~~~~~~~~~~L~NGl~v~~~~~~~-~~-~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~ 84 (446)
T 1pp9_A 7 ALQSVPETQVSQLDNGLRVASEQSSQ-PT-CTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGA 84 (446)
T ss_dssp HHTTSCCCEEEECTTCCEEEEEECSC-SE-EEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTC
T ss_pred CCCCCCCCEEEECCCCCEEEEEECCC-CE-EEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 21156674599999998899996799-87-99999975304889999873899999975178999998999999997099
Q ss_pred EEEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Q ss_conf 17798247559999992799888763639999999999871999994899999999999999405-94878999999974
Q 000890 253 RSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMN-TIEYRVDCQLLQHL 331 (1237)
Q Consensus 253 ~~na~t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~-~~~~~~~~~~~~~l 331 (1237)
++||+|+.|+|+|++++++ ++++.+|++++|++++|.|++++|++||+++++|+++.. ++..++...+...+
T Consensus 85 ~~na~t~~d~t~~~~~~~~-------~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~ 157 (446)
T 1pp9_A 85 HLNAYSTREHTAYYIKALS-------KDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATA 157 (446)
T ss_dssp EEEEEECSSCEEEEEEEEG-------GGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred EEEEEECCCEEEEEEEECH-------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 7999976876999999257-------889999999999985799998999999999999998634288899999999986
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 04899999999999888624679999999981045787199999269985789999998836999999889889999743
Q 000890 332 HSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSA 411 (1237)
Q Consensus 332 ~~~~~~~~~~~~G~~~~i~~~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~p~~ 411 (1237)
|++++|+ ++++|++++|++++.++|++||++||+|+||+|+|+||+++ ++++++++++|+.|+.+..+.....+.++
T Consensus 158 ~~~~~~~-~~~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~-~~~~~~i~~~f~~~~~~~~~~~~~~~~~~- 234 (446)
T 1pp9_A 158 FQGTPLA-QSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEH-RQLLDLAQKHFSGLSGTYDEDAVPTLSPC- 234 (446)
T ss_dssp TTTSGGG-SCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCH-HHHHHHHHHHHTTSCSCCCSSCCCCCCCC-
T ss_pred CCCCCCC-CCCCCCHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCC-
T ss_conf 2899999-99858889997479999999999446788779999808999-99999999982368888887766667788-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 23322223455445899997655677863026886410357998322344689998888753343789999999999999
Q 000890 412 FGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLS 491 (1237)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 491 (1237)
. .. .... ...+....++.+.++|..|..... ......++..++.+
T Consensus 235 -------------~-~~----------~~~~--~~~~~~~~~~~v~~~~~~~~~~~~---------d~~al~vl~~iLg~ 279 (446)
T 1pp9_A 235 -------------R-FT----------GSQI--CHREDGLPLAHVAIAVEGPGWAHP---------DNVALQVANAIIGH 279 (446)
T ss_dssp -------------C-CC----------CEEE--EEEETTSSSEEEEEEEEECCTTCT---------HHHHHHHHHHHHCE
T ss_pred -------------C-CC----------CCEE--EEECCCCCCEEEEEEEECCCCCCC---------CHHHHHHHHHHHCC
T ss_conf -------------8-78----------9658--970588540589999734899995---------09999999998199
Q ss_pred ---------HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf ---------99999998620189990475325676556553099999992688699999999999999998699999999
Q 000890 492 ---------ALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELT 562 (1237)
Q Consensus 492 ---------~l~~rl~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~a~~~i~~el~~l~~~git~~El~ 562 (1237)
.+++||.+.+|+ .+.+|++++.+... ...+.|.+++.+++++++++++.+.++|+++.+ ||+++||+
T Consensus 280 ~~~~~~~g~~~~srL~~~lr~-~glay~~~s~~~~~--~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~-~~t~~el~ 355 (446)
T 1pp9_A 280 YDCTYGGGAHLSSPLASIAAT-NKLCQSFQTFNICY--ADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCT-SATESEVL 355 (446)
T ss_dssp EETTCSCGGGCSSHHHHHHHH-HTCCSEEEEEEEEC--SSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHH-HCCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHH-CCCEEEEEEECCCC--CCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf 864578889877799999986-49838998850567--787699999997787799999999999999864-69999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999998430679701368999852-0798016947789999998489999999999998987530379999
Q 000890 563 RYMDALLKDSEHLAAMIDNISSVDNLDFIMESD-ALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPS 641 (1237)
Q Consensus 563 ~ak~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~~~ 641 (1237)
++|+.++.++. ...++.. ..+..+...+ ..+. + ....++.+.|.+||++||++++++|+.
T Consensus 356 ~ak~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~g~----~-~~~~~~~~~i~~vt~edv~~~a~~~~~--------- 416 (446)
T 1pp9_A 356 RGKNLLRNALV---SHLDGTT--PVCEDIGRSLLTYGR----R-IPLAEWESRIAEVDARVVREVCSKYFY--------- 416 (446)
T ss_dssp HHHHHHHHHHH---HHSCSHH--HHHHHHHHHHHHTSS----C-CCHHHHHHHHHTCCHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHH---HHCCCHH--HHHHHHHHHHHHCCC----C-CCHHHHHHHHHCCCHHHHHHHHHHHCC---------
T ss_conf 99999999998---8058899--999999999997389----8-999999999973999999999999738---------
Q ss_pred CCCCCEEEEECCCC
Q ss_conf 99873699831564
Q 000890 642 APVPAAIVACVPKK 655 (1237)
Q Consensus 642 ~~~~~~~~~~~P~~ 655 (1237)
+++..+++++|..
T Consensus 417 -~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 417 -DQCPAVAGFGPIE 429 (446)
T ss_dssp -TCCCEEEEEESCT
T ss_pred -CCCCEEEEECCCC
T ss_conf -8886799988744
No 10
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=1.00 E-value=1 Score=403.82 Aligned_cols=423 Identities=12% Similarity=0.111 Sum_probs=316.5
Q ss_pred CCCCCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHH------HHHHCCCEEE
Q ss_conf 9997289980599599997779998448999998045789999999899999999843997736------5861297177
Q 000890 182 SHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKRE------KLLGTGARSN 255 (1237)
Q Consensus 182 ~~p~~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~------~l~~~G~~~n 255 (1237)
.+|.++.++|+||++|++.+.+. +. +.+.++|++|++.|++++.|+|||+|||+|+||++++ .++.+|+.+|
T Consensus 2 ~~~~~~~~~L~NGl~v~~~~~~~-~~-~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~n 79 (475)
T 1hr6_A 2 RTDNFKLSSLANGLKVATSNTPG-HF-SALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQ 79 (475)
T ss_dssp CTTCCEEEECTTSCEEEEESCCC-SS-EEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEE
T ss_pred CCCCCEEEECCCCCEEEEEECCC-CE-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 98884699878998899984899-87-99999982136788999875999999998378999999999999998299788
Q ss_pred EEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCC
Q ss_conf 9824755999999279988876363999999999987199999489999999999999940-594878999999974048
Q 000890 256 AYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMM-NTIEYRVDCQLLQHLHSE 334 (1237)
Q Consensus 256 a~t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~-~~~~~~~~~~~~~~l~~~ 334 (1237)
|+|+.|+|+|++++++ ++++.+|++++|++.+|.|++++|++||+++++|+++. +++..++...+...+|++
T Consensus 80 a~t~~d~t~y~~~~~~-------~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~ 152 (475)
T 1hr6_A 80 CTSSRENLMYQASVFN-------QDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSG 152 (475)
T ss_dssp EEECSSCEEEEEEECG-------GGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred EEECCCEEEEEEEECH-------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 7974673999998057-------889999999999984889999999999999999998765498899999999985489
Q ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999888624679999999981045787199999269985789999998836999999889889999743233
Q 000890 335 NKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSAFGA 414 (1237)
Q Consensus 335 ~~~~~~~~~G~~~~i~~~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~p~~~~~ 414 (1237)
++|+ ++.+|++++|++++.++|++||++||+|+||+|+|+| +++ ++++++++++|+.|+.+..+... +.+ .+
T Consensus 153 ~~~~-~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d~-~~~~~~i~~~f~~~~~~~~~~~~--~~~-~~-- 224 (475)
T 1hr6_A 153 ETLG-SPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPH-EKALELTGKYLGDWQSTHPPITK--KVA-QY-- 224 (475)
T ss_dssp SGGG-SCSSCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCH-HHHHHHHHHHHTTCCCCCCCCCC--CCC-CC--
T ss_pred CCCC-CCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC-CCH-HHHHHHHHHHHCCCCCCCCCCCC--CCC-CC--
T ss_conf 9999-9873898998446999999999973895458999937-889-99999999983568888887778--888-87--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--
Q ss_conf 222234554458999976556778630268864103579983223446899988887533437899999999999999--
Q 000890 415 MANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSA-- 492 (1237)
Q Consensus 415 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-- 492 (1237)
.+. ...... .. .......++.+.++|..+..... + .....++..++.+.
T Consensus 225 -------------~~~-~~~~~~---~~---~~~~~~~~~~v~~~~~~~~~~~~------d---~~~l~vl~~iLg~~~~ 275 (475)
T 1hr6_A 225 -------------TGG-ESCIPP---AP---VFGNLPELFHIQIGFEGLPIDHP------D---IYALATLQTLLGGGGS 275 (475)
T ss_dssp -------------CCE-EEEECC---CC---CCSSSCCCEEEEEEEECCCTTCT------T---HHHHHHHHHHHCEEES
T ss_pred -------------CCC-EEEEEC---CC---CCCCCCCCEEEEEEEECCCCCCC------C---HHHHHHHHHHHCCCCC
T ss_conf -------------687-699955---55---56788651499999965899996------6---8999999999689965
Q ss_pred ---------HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH---CCCCHHH
Q ss_conf ---------9999998620189990475325676556553099999992688699999999999999998---6999999
Q 000890 493 ---------LHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKE---FGVTNGE 560 (1237)
Q Consensus 493 ---------l~~rl~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~a~~~i~~el~~l~~---~git~~E 560 (1237)
+.+||...+|+..+++|++++.+.... ..+.|.+++.+.+++++++++.+.++++++.+ +||+++|
T Consensus 276 f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~E 353 (475)
T 1hr6_A 276 FSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYS--DSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDE 353 (475)
T ss_dssp SCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECS--SCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCC--CCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 556788877577899999986487069997405667--884599999967888999999999999999730479989999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999998430679701368999852-07980169477899999984899999999999989875303799
Q 000890 561 LTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESD-ALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGR 639 (1237)
Q Consensus 561 l~~ak~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~vT~edi~~~a~k~l~~~~~~~~ 639 (1237)
|+++|+.++.++.. ..++... .+..+...+ ..+. +.. ..++.+.|.+||++||++++++||.
T Consensus 354 l~~ak~~l~~~~~~---~~~~~~~--~~~~~~~~~~~~g~----~~~-~~~~~~~i~~vt~~dv~~~a~~~l~------- 416 (475)
T 1hr6_A 354 VSRAKNQLKSSLLM---NLESKLV--ELEDMGRQVLMHGR----KIP-VNEMISKIEDLKPDDISRVAEMIFT------- 416 (475)
T ss_dssp HHHHHHHHHHHHHH---HTTSHHH--HHHHHHHHHHHHSC----CCC-HHHHHHHHHTCCHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHH---HCCCHHH--HHHHHHHHHHHCCC----CCC-HHHHHHHHHCCCHHHHHHHHHHHHH-------
T ss_conf 99999999999998---4798999--99999999996599----899-9999999975899999999999864-------
Q ss_pred CCCC---------CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 9999---------873699831564223688875555896799999980237
Q 000890 640 PSAP---------VPAAIVACVPKKVHIDGIGETEFKISPNEIVDAIKSGME 682 (1237)
Q Consensus 640 ~~~~---------~~~~~~~~~P~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 682 (1237)
+ .+..+++++|... .++.+++.+.+..+..
T Consensus 417 ---~~~~~~~~~~~~~~~~v~g~~~~----------~~~~~~~~~~~~~~~~ 455 (475)
T 1hr6_A 417 ---GNVNNAGNGKGRATVVMQGDRGS----------FGDVENVLKAYGLGNS 455 (475)
T ss_dssp ---TCCCCTTCCCCCCEEEEESCGGG----------GCCHHHHHHHTTCSCC
T ss_pred ---HCCCCCCCCCCCCEEEEECCCCC----------CCCHHHHHHHHCCCCC
T ss_conf ---10443224678837999888444----------7589999998614645
Done!