Query 000891
Match_columns 1236
No_of_seqs 307 out of 1253
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 22:59:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000891.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_22-26//hhsearch_pdb/000891hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5n_A E3 ubiquitin-protein li 1.0 1 1 130.3 1.6 138 369-515 2-160 (207)
2 3o36_A Transcription intermedi 1.0 1 1 126.4 3.2 141 372-520 2-164 (184)
3 2ro1_A Transcription intermedi 1.0 1 1 123.0 4.4 141 374-521 2-159 (189)
4 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 109.0 7.4 57 365-421 16-72 (88)
5 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 104.9 5.3 94 369-468 2-99 (111)
6 4gne_A Histone-lysine N-methyl 1.0 1 1 104.5 4.6 87 369-467 10-98 (107)
7 2e6r_A Jumonji/ARID domain-con 1.0 1 1 103.4 3.0 55 369-423 11-68 (92)
8 2lri_C Autoimmune regulator; Z 1.0 1 1 101.9 4.4 54 369-422 7-60 (66)
9 1mm2_A MI2-beta; PHD, zinc fin 1.0 1 1 101.4 4.9 54 369-422 4-57 (61)
10 1xwh_A Autoimmune regulator; P 1.0 1 1 101.3 3.6 53 371-423 5-57 (66)
No 1
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=130.25 Aligned_cols=138 Identities=26% Similarity=0.484 Sum_probs=91.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCC
Q ss_conf 544322001200346722256888864423223545689999985263364265787434466-----555652122231
Q 000891 369 DVDGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGT-----SLRGAELFGIDL 443 (1236)
Q Consensus 369 e~d~ndD~C~VCgdgG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~k~~pe~E~G~-----s~rg~e~lGcD~ 443 (1236)
+++.++++|.+|+++|+||+||+|+++||+.|++|++..+|+|+|+|+.|..... ++.+++. ..++....+...
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~-~~~~~~c~~~~~s~k~~~~~~ls~ 80 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK-PEVEYDCDNLQHSKKGKTAQGLSP 80 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS-CSSCCSCC----------CCSSCH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCC-CCCCCCCCCCCCHHHHHHHHCCCH
T ss_conf 8788889898889999367769999843871589998888998878684268664-664323333331011223310569
Q ss_pred HHHHHHHHCCCC------------EEECCCCCCHHCCCCCC----CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 000135111542------------15215789022012224----57635788864112210133535999999840578
Q 000891 444 YERVFLGTCNHL------------LVLNASSNTEQYIRYYN----PIDIPKVLQALLSSVQHVSLYLGICKAILHYWDIP 507 (1236)
Q Consensus 444 cgQ~Yh~kC~rl------------Lve~~s~D~e~c~rYYs----~vDl~evLevL~gsDiH~~~Y~eIc~~I~e~Wdi~ 507 (1236)
..+ .+|+++ +..+ ++ ...-.||. ++|+..+.++|.... ...|..+..++.+..-++
T Consensus 81 ~~~---~~c~~il~~l~~~~~s~~F~~P--v~-~~~pdY~~iIk~PmdL~tI~~kl~~~~--~~~Y~s~~~f~~Dv~li~ 152 (207)
T 3u5n_A 81 VDQ---RKCERLLLYLYCHELSIEFQEP--VP-ASIPNYYKIIKKPMDLSTVKKKLQKKH--SQHYQIPDDFVADVRLIF 152 (207)
T ss_dssp HHH---HHHHHHHHHHHTSTTCGGGSSC--CC-TTSTTHHHHCSSCCCHHHHHHHHSTTS--TTCCSSHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHCCCHHHHHCC--CC-HHHCCHHHHHCCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHH
T ss_conf 999---9999999999846423412215--88-665007677078637999999985536--888699999999999999
Q ss_pred CCCCCCCC
Q ss_conf 88777787
Q 000891 508 ESVVPFMG 515 (1236)
Q Consensus 508 ~nl~~~~~ 515 (1236)
.|...|+.
T Consensus 153 ~Na~~yN~ 160 (207)
T 3u5n_A 153 KNCERFNE 160 (207)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
T ss_conf 99999787
No 2
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=126.43 Aligned_cols=141 Identities=25% Similarity=0.524 Sum_probs=91.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------C-CCCCC-CCCCCC
Q ss_conf 322001200346722256888864423223545689999985263364265787434466------5-55652-122231
Q 000891 372 GNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGT------S-LRGAE-LFGIDL 443 (1236)
Q Consensus 372 ~ndD~C~VCgdgG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~k~~pe~E~G~------s-~rg~e-~lGcD~ 443 (1236)
+|+++|.+|+++|+||+||+|+++||+.|++|++..+|+|+|+|+.|.... .++.++.. + .+..+ ..+...
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~-~~~~e~dc~~~~~~s~~~~~~~~~~l~~ 80 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS-KPEVEYDCDAPSHNSEKKKTEGLVKLTP 80 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS-SCSSCCGGGCCSSCTTTSCCTTCCCCCH
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 999954117999905662999953081136898787999887892556865-5555334344443442110001123698
Q ss_pred HHHHHHHHCCCCEEE----------CCCCCCHHCCCCCC----CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 000135111542152----------15789022012224----5763578886411221013353599999984057888
Q 000891 444 YERVFLGTCNHLLVL----------NASSNTEQYIRYYN----PIDIPKVLQALLSSVQHVSLYLGICKAILHYWDIPES 509 (1236)
Q Consensus 444 cgQ~Yh~kC~rlLve----------~~s~D~e~c~rYYs----~vDl~evLevL~gsDiH~~~Y~eIc~~I~e~Wdi~~n 509 (1236)
..+ ..|++++.. -...+ ...-.||. ++|+..+.++|.... ..|..+..++.+..-++.|
T Consensus 81 ~~~---~~c~~il~~l~~~~~s~~F~~Pv~-~~~pdY~~iIk~PmdL~tI~~kl~~~~---~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 81 IDK---RKCERLLLFLYCHEMSLAFQDPVP-LTVPDYYKIIKNPMDLSTIKKRLQEDY---SMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp HHH---HHHHHHHHHHHHSTTCHHHHSCCC-TTSTTHHHHCSSCCCHHHHHHHHHSTT---CSCCSHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHCHHHHHHCCCCC-CCCCCHHHHCCCCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHH
T ss_conf 999---999999999984602333236433-679856553588879999999998467---7899999999999999999
Q ss_pred CCCCCCCCCCC
Q ss_conf 77778764455
Q 000891 510 VVPFMGMETNT 520 (1236)
Q Consensus 510 l~~~~~~e~sl 520 (1236)
...|+..++..
T Consensus 154 a~~yN~~~s~v 164 (184)
T 3o36_A 154 CAEFNEPDSEV 164 (184)
T ss_dssp HHHHSCTTCHH
T ss_pred HHHHCCCCCHH
T ss_conf 99987999999
No 3
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=122.96 Aligned_cols=141 Identities=16% Similarity=0.315 Sum_probs=91.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCC----CCCCCCCCHHHHH
Q ss_conf 2001200346722256888864423223545689999985263364265787434466-5556----5212223100013
Q 000891 374 GDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGT-SLRG----AELFGIDLYERVF 448 (1236)
Q Consensus 374 dD~C~VCgdgG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~k~~pe~E~G~-s~rg----~e~lGcD~cgQ~Y 448 (1236)
++.|.+|+++|+||+||+|+++||+.|+.|++..+|.|+|+|+.|....... .+.|. +..+ ....++....+.
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~~~-~~~g~~s~~~~~~~~~~~~m~~~~~~- 79 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK-EEDGSLSLDGADSTGVVAKLSPANQR- 79 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCCTT-CSCSSCCSSSSSSSCSSCSSCHHHHH-
T ss_pred CCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHH-
T ss_conf 8827647999945689999833310228987566899878892704777777-55442011345420001479999999-
Q ss_pred HHHCCCCEEE----------CCCCCCHHCCCCC--CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 5111542152----------1578902201222--457635788864112210133535999999840578887777876
Q 000891 449 LGTCNHLLVL----------NASSNTEQYIRYY--NPIDIPKVLQALLSSVQHVSLYLGICKAILHYWDIPESVVPFMGM 516 (1236)
Q Consensus 449 h~kC~rlLve----------~~s~D~e~c~rYY--s~vDl~evLevL~gsDiH~~~Y~eIc~~I~e~Wdi~~nl~~~~~~ 516 (1236)
.|.+++.. -..++.+.+.... +++|+..+.++|.... ...|..+..|+.+.+-++.|...|+ .
T Consensus 80 --~c~~iL~~l~~~~~s~pF~~pV~~~Yy~iIk~~~PMDL~tIk~kL~~~~--~~~Y~s~~eF~~Dv~Lif~N~~~yN-~ 154 (189)
T 2ro1_A 80 --KCERVLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIRARLQEKL--SPPYSSPQEFAQDVGRMFKQFNKLT-E 154 (189)
T ss_dssp --HHHHHHHHHHHSTTHHHHHSCSCCTTCSSSCSSCCCCHHHHHHHHHTSS--SSCCSCHHHHHHHHHHHHHHHHHHC-C
T ss_pred --HHHHHHHHCCCCCCCHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHHC-C
T ss_conf --9999975303585321114789756523004788226999999996699--7666999999999999999999988-9
Q ss_pred CCCCC
Q ss_conf 44554
Q 000891 517 ETNTI 521 (1236)
Q Consensus 517 e~sl~ 521 (1236)
++.+.
T Consensus 155 ~s~~~ 159 (189)
T 2ro1_A 155 DKADV 159 (189)
T ss_dssp SSCSS
T ss_pred CCHHH
T ss_conf 98899
No 4
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=108.96 Aligned_cols=57 Identities=26% Similarity=0.621 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999754432200120034672225688886442322354568999998526336426
Q 000891 365 APGVDVDGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAIN 421 (1236)
Q Consensus 365 ~~~~e~d~ndD~C~VCgdgG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~ 421 (1236)
..+...+.+++.|.+|+++|+||+||+|+++||++|+.|++..+|+|+|+|+.|...
T Consensus 16 ~~~~~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 16 DEFGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCCCSSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 444333889981837699997788999997241632898978786997677264487
No 5
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=104.86 Aligned_cols=94 Identities=19% Similarity=0.522 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 544322001200346722---256888864423223545689999985263364-2657874344665556521222310
Q 000891 369 DVDGNGDECRICGMDGTL---LCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECA-INKVGPIVTIGTSLRGAELFGIDLY 444 (1236)
Q Consensus 369 e~d~ndD~C~VCgdgG~L---LlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~-~~k~~pe~E~G~s~rg~e~lGcD~c 444 (1236)
+.+.+++.|.+|+++|++ |+|++|+++||..|+++++..+|.+.|+|+.|. +..++... ....++.||.|
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~------~~~~ll~Cd~C 75 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSG------EDSKMLVCDTC 75 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCS------CCTTEEECSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCEEECCCC
T ss_conf 888997999578998887588599999977396770886554456686587678262347658------98776589999
Q ss_pred HHHHHHHCCCCEEECCCCCCHHCC
Q ss_conf 001351115421521578902201
Q 000891 445 ERVFLGTCNHLLVLNASSNTEQYI 468 (1236)
Q Consensus 445 gQ~Yh~kC~rlLve~~s~D~e~c~ 468 (1236)
++.||..|..+.+.....+.|+|.
T Consensus 76 ~~~yH~~Cl~ppl~~~P~g~W~C~ 99 (111)
T 2ysm_A 76 DKGYHTFCLQPVMKSVPTNGWKCK 99 (111)
T ss_dssp CCEEEGGGSSSCCSSCCSSCCCCH
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 808869865876566889882992
No 6
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=104.48 Aligned_cols=87 Identities=24% Similarity=0.476 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 5443220012003467222568--88864423223545689999985263364265787434466555652122231000
Q 000891 369 DVDGNGDECRICGMDGTLLCCD--GCPSAYHTRCIGVSKMYVPEGSWYCPECAINKVGPIVTIGTSLRGAELFGIDLYER 446 (1236)
Q Consensus 369 e~d~ndD~C~VCgdgG~LLlCD--~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~k~~pe~E~G~s~rg~e~lGcD~cgQ 446 (1236)
..+.++++|.+|+++|+||+|| +|+++||+.|++ +..+|+|+|+||.|.+..++.. . .+.|..|.+
T Consensus 10 ~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~---------~-~~~C~~Cp~ 77 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA---------A-VSFCEFCPH 77 (107)
T ss_dssp CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB---------C-CEECSSSSC
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCCCCCC---------C-CCCCCCCCC
T ss_conf 868897999847997847577999999265225186--8757998888989998817798---------9-867477871
Q ss_pred HHHHHCCCCEEECCCCCCHHC
Q ss_conf 135111542152157890220
Q 000891 447 VFLGTCNHLLVLNASSNTEQY 467 (1236)
Q Consensus 447 ~Yh~kC~rlLve~~s~D~e~c 467 (1236)
.|+..|....+.....+++++
T Consensus 78 sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 78 SFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp EECTTTCTTSCEECTTTTCEE
T ss_pred CHHHHCCCCCCEECCCCCCEE
T ss_conf 011211587311027889666
No 7
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=103.37 Aligned_cols=55 Identities=31% Similarity=0.777 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5443220012003467---222568888644232235456899999852633642657
Q 000891 369 DVDGNGDECRICGMDG---TLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKV 423 (1236)
Q Consensus 369 e~d~ndD~C~VCgdgG---~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~k~ 423 (1236)
....+++.|.||++++ .||+||+|+++||+.|++||+..+|+|+|+|+.|....+
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1346889883689969987788817998433453479884658898749804728304
No 8
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=101.90 Aligned_cols=54 Identities=26% Similarity=0.561 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 544322001200346722256888864423223545689999985263364265
Q 000891 369 DVDGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINK 422 (1236)
Q Consensus 369 e~d~ndD~C~VCgdgG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~k 422 (1236)
....++..|.+|+++|+||+||+|+++||+.|++|++..+|+|+|+|+.|....
T Consensus 7 ~~~~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 7 QNLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 589997983778998918788998981001227886475889798992556978
No 9
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=1.00 E-value=1 Score=101.36 Aligned_cols=54 Identities=41% Similarity=1.054 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 544322001200346722256888864423223545689999985263364265
Q 000891 369 DVDGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINK 422 (1236)
Q Consensus 369 e~d~ndD~C~VCgdgG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~k 422 (1236)
+++.+++.|.+|+++|+||+||+|+++||+.|++|++..+|+|+|+|+.|....
T Consensus 4 ~~d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCH
T ss_conf 536888957878998988784898977732023788576878851995245720
No 10
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=1.00 E-value=1 Score=101.29 Aligned_cols=53 Identities=42% Similarity=1.085 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43220012003467222568888644232235456899999852633642657
Q 000891 371 DGNGDECRICGMDGTLLCCDGCPSAYHTRCIGVSKMYVPEGSWYCPECAINKV 423 (1236)
Q Consensus 371 d~ndD~C~VCgdgG~LLlCD~Cp~afHl~CL~PpL~~iPeGdW~Cp~C~~~k~ 423 (1236)
+.+++.|.+|+++|+||+||+|+++||+.|++||+..+|+|+|+|+.|...+.
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 89989995579999788818998420654568885768788709912408144
Done!