Query 000892
Match_columns 1236
No_of_seqs 486 out of 3011
Neff 6.3
Searched_HMMs 46136
Date Tue Apr 2 00:42:06 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0298 DEAD box-containing he 100.0 2.5E-88 5.5E-93 828.0 22.5 1015 45-1235 3-1043(1394)
2 KOG0385 Chromatin remodeling c 100.0 3.1E-81 6.6E-86 733.7 27.1 362 498-923 217-613 (971)
3 KOG0387 Transcription-coupled 100.0 6.2E-76 1.3E-80 693.2 24.2 391 498-955 255-698 (923)
4 KOG0384 Chromodomain-helicase 100.0 1.1E-74 2.4E-79 705.6 19.5 369 498-926 420-828 (1373)
5 KOG0392 SNF2 family DNA-depend 100.0 2.9E-73 6.3E-78 688.7 21.7 377 498-927 1031-1472(1549)
6 KOG0389 SNF2 family DNA-depend 100.0 9.5E-71 2.1E-75 648.2 17.3 377 498-931 448-910 (941)
7 PLN03142 Probable chromatin-re 100.0 4.9E-69 1.1E-73 680.8 29.2 364 498-925 219-615 (1033)
8 KOG0391 SNF2 family DNA-depend 100.0 2.1E-68 4.5E-73 637.3 18.8 232 499-788 666-904 (1958)
9 KOG4439 RNA polymerase II tran 100.0 1.7E-66 3.6E-71 604.9 27.7 397 500-924 385-873 (901)
10 KOG1002 Nucleotide excision re 100.0 1.9E-66 4.1E-71 583.4 25.5 391 499-926 232-766 (791)
11 KOG0388 SNF2 family DNA-depend 100.0 1.7E-67 3.7E-72 608.7 16.6 357 498-923 617-1168(1185)
12 KOG0386 Chromatin remodeling c 100.0 1.5E-64 3.3E-69 607.3 17.1 364 498-922 444-851 (1157)
13 KOG0390 DNA repair protein, SN 100.0 1.9E-58 4.1E-63 561.1 26.0 384 498-946 298-740 (776)
14 COG0553 HepA Superfamily II DN 100.0 6.3E-53 1.4E-57 543.8 21.6 374 498-924 390-837 (866)
15 KOG1001 Helicase-like transcri 100.0 1.4E-51 3.1E-56 504.6 26.9 370 497-924 188-665 (674)
16 KOG1015 Transcription regulato 100.0 1.6E-51 3.5E-56 486.7 20.0 445 497-986 727-1355(1567)
17 PF00176 SNF2_N: SNF2 family N 100.0 6.8E-46 1.5E-50 419.9 17.9 241 499-789 59-299 (299)
18 KOG1016 Predicted DNA helicase 100.0 1.2E-43 2.5E-48 413.3 13.9 406 498-938 312-874 (1387)
19 PRK04914 ATP-dependent helicas 100.0 1.7E-38 3.8E-43 402.2 29.4 342 498-923 199-619 (956)
20 KOG1000 Chromatin remodeling p 100.0 1.3E-38 2.8E-43 360.6 21.1 353 499-933 242-629 (689)
21 KOG0383 Predicted helicase [Ge 100.0 3.1E-39 6.7E-44 390.8 10.3 314 498-877 345-691 (696)
22 TIGR00603 rad25 DNA repair hel 99.9 1.8E-23 4E-28 258.3 24.5 301 499-930 299-627 (732)
23 PRK13766 Hef nuclease; Provisi 99.8 1.9E-18 4.1E-23 221.8 23.0 369 499-919 59-489 (773)
24 COG1061 SSL2 DNA or RNA helica 99.4 1.2E-11 2.6E-16 149.2 23.5 298 500-920 82-405 (442)
25 PHA02558 uvsW UvsW helicase; P 99.4 3.8E-11 8.2E-16 147.3 22.5 99 500-638 160-261 (501)
26 KOG1123 RNA polymerase II tran 99.3 7.2E-12 1.6E-16 144.3 10.8 131 499-657 346-477 (776)
27 PF04851 ResIII: Type III rest 99.3 2E-11 4.4E-16 128.0 13.2 124 500-637 52-183 (184)
28 smart00487 DEXDc DEAD-like hel 99.3 2.1E-11 4.6E-16 127.9 12.2 114 499-639 55-173 (201)
29 cd00046 DEXDc DEAD-like helica 99.3 2.6E-11 5.7E-16 119.7 11.6 110 499-636 31-144 (144)
30 PRK11448 hsdR type I restricti 98.9 7.8E-09 1.7E-13 136.0 14.1 116 499-639 464-597 (1123)
31 COG1111 MPH1 ERCC4-like helica 98.9 9.8E-08 2.1E-12 112.3 21.3 127 499-654 59-189 (542)
32 cd00268 DEADc DEAD-box helicas 98.7 2.3E-07 5.1E-12 99.9 14.0 111 499-637 70-185 (203)
33 TIGR00348 hsdR type I site-spe 98.6 3E-07 6.5E-12 116.6 13.4 110 499-639 294-405 (667)
34 TIGR00643 recG ATP-dependent D 98.6 4E-07 8.7E-12 115.0 13.6 112 500-641 286-401 (630)
35 PF00270 DEAD: DEAD/DEAH box h 98.5 7.4E-07 1.6E-11 92.6 10.9 118 499-644 45-169 (169)
36 KOG0354 DEAD-box like helicase 98.5 1.5E-05 3.3E-10 99.0 23.9 124 499-652 107-236 (746)
37 PF13872 AAA_34: P-loop contai 98.4 7.8E-06 1.7E-10 92.6 16.1 144 552-725 136-302 (303)
38 PRK10917 ATP-dependent DNA hel 98.3 2.3E-06 5.1E-11 108.9 12.1 111 500-641 312-424 (681)
39 COG4096 HsdR Type I site-speci 98.2 3.8E-06 8.3E-11 104.1 11.1 106 499-638 216-322 (875)
40 PRK11192 ATP-dependent RNA hel 98.2 1E-05 2.2E-10 97.9 13.8 118 499-643 74-195 (434)
41 TIGR00614 recQ_fam ATP-depende 98.2 7.6E-06 1.7E-10 100.1 12.7 129 499-653 52-189 (470)
42 PRK10689 transcription-repair 98.2 8E-06 1.7E-10 108.5 13.7 112 499-641 650-763 (1147)
43 TIGR00580 mfd transcription-re 98.2 8.7E-06 1.9E-10 106.0 13.2 112 499-641 501-614 (926)
44 PRK01172 ski2-like helicase; P 98.2 1.5E-05 3.3E-10 101.7 15.0 121 499-655 66-193 (674)
45 PRK02362 ski2-like helicase; P 98.2 1.8E-05 3.9E-10 102.1 15.6 114 499-645 68-188 (737)
46 PRK10590 ATP-dependent RNA hel 98.1 2.3E-05 5E-10 95.6 14.2 111 500-637 77-191 (456)
47 PRK11776 ATP-dependent RNA hel 98.0 3.2E-05 7E-10 94.4 13.5 110 500-637 74-189 (460)
48 TIGR01389 recQ ATP-dependent D 98.0 3.2E-05 6.9E-10 97.4 13.0 127 499-652 54-188 (591)
49 COG1204 Superfamily II helicas 98.0 2.4E-05 5.2E-10 100.0 11.6 122 499-656 77-205 (766)
50 PTZ00424 helicase 45; Provisio 98.0 4.8E-05 1E-09 90.9 13.4 111 499-637 97-212 (401)
51 PRK11057 ATP-dependent DNA hel 98.0 3.9E-05 8.5E-10 96.8 13.1 128 499-653 66-201 (607)
52 PLN00206 DEAD-box ATP-dependen 98.0 6E-05 1.3E-09 93.4 13.9 111 499-637 197-311 (518)
53 PTZ00110 helicase; Provisional 98.0 5.6E-05 1.2E-09 94.2 13.6 110 500-636 205-318 (545)
54 PRK00254 ski2-like helicase; P 97.9 0.0001 2.2E-09 94.9 15.6 115 499-646 69-187 (720)
55 PRK04837 ATP-dependent RNA hel 97.9 0.0001 2.2E-09 89.1 14.1 111 499-637 84-201 (423)
56 PRK01297 ATP-dependent RNA hel 97.9 0.00012 2.6E-09 89.9 14.2 113 499-637 163-281 (475)
57 KOG0298 DEAD box-containing he 97.9 6.4E-06 1.4E-10 105.3 2.5 107 815-921 1214-1338(1394)
58 PRK04537 ATP-dependent RNA hel 97.8 0.00016 3.4E-09 90.7 14.0 112 499-637 85-203 (572)
59 PRK11634 ATP-dependent RNA hel 97.8 0.00023 5E-09 90.0 14.2 111 500-637 76-191 (629)
60 COG1200 RecG RecG-like helicas 97.7 9.6E-05 2.1E-09 91.0 9.9 112 500-642 313-427 (677)
61 PRK09401 reverse gyrase; Revie 97.7 0.00024 5.3E-09 94.9 14.3 88 499-611 124-214 (1176)
62 PRK05580 primosome assembly pr 97.7 0.00028 6E-09 90.1 13.4 107 499-638 191-306 (679)
63 COG1205 Distinct helicase fami 97.7 0.00018 3.9E-09 93.4 11.7 113 500-635 117-241 (851)
64 TIGR03158 cas3_cyano CRISPR-as 97.7 0.00038 8.3E-09 82.4 13.6 125 500-638 41-193 (357)
65 PRK13767 ATP-dependent helicas 97.6 0.00047 1E-08 90.5 13.8 114 499-637 85-218 (876)
66 COG4889 Predicted helicase [Ge 97.6 0.0001 2.2E-09 91.1 6.4 116 499-637 207-351 (1518)
67 TIGR03817 DECH_helic helicase/ 97.6 0.00066 1.4E-08 87.5 14.3 112 500-636 83-204 (742)
68 KOG0331 ATP-dependent RNA heli 97.5 0.0019 4.2E-08 78.5 16.5 107 500-635 167-280 (519)
69 PHA02653 RNA helicase NPH-II; 97.4 0.0043 9.2E-08 78.9 18.7 104 499-637 223-332 (675)
70 TIGR00595 priA primosomal prot 97.3 0.0006 1.3E-08 84.2 9.8 106 499-637 26-140 (505)
71 PLN03137 ATP-dependent DNA hel 97.2 0.0019 4.1E-08 84.5 12.0 130 499-651 501-641 (1195)
72 TIGR01587 cas3_core CRISPR-ass 97.2 0.0012 2.6E-08 77.8 9.3 120 499-637 30-166 (358)
73 PF07652 Flavi_DEAD: Flaviviru 97.1 0.0026 5.6E-08 65.3 9.3 101 499-638 34-138 (148)
74 PRK15483 type III restriction- 96.9 0.012 2.5E-07 76.6 15.4 155 499-668 90-274 (986)
75 TIGR03714 secA2 accessory Sec 96.8 0.0039 8.5E-08 79.4 10.1 118 500-648 113-232 (762)
76 COG1197 Mfd Transcription-repa 96.7 0.0071 1.5E-07 78.9 11.3 113 499-642 644-758 (1139)
77 KOG0952 DNA/RNA helicase MER3/ 96.7 0.0052 1.1E-07 78.4 9.7 136 500-667 166-311 (1230)
78 TIGR01054 rgy reverse gyrase. 96.7 0.0043 9.2E-08 83.5 9.6 88 499-612 122-213 (1171)
79 KOG0350 DEAD-box ATP-dependent 96.5 0.0066 1.4E-07 72.2 7.9 96 498-614 215-311 (620)
80 TIGR02621 cas3_GSU0051 CRISPR- 96.3 0.03 6.6E-07 72.3 13.3 38 599-637 172-216 (844)
81 COG1201 Lhr Lhr-like helicases 96.1 0.023 4.9E-07 73.0 10.3 125 500-654 75-206 (814)
82 PF11496 HDA2-3: Class II hist 95.8 0.0071 1.5E-07 69.8 4.0 199 708-921 5-257 (297)
83 PRK14701 reverse gyrase; Provi 95.7 0.024 5.3E-07 78.3 8.9 87 500-611 124-213 (1638)
84 PRK09200 preprotein translocas 95.5 0.045 9.7E-07 70.5 9.5 88 499-611 120-212 (790)
85 PRK09751 putative ATP-dependen 95.1 0.1 2.2E-06 71.5 11.5 118 499-645 38-176 (1490)
86 PF13086 AAA_11: AAA domain; P 94.8 0.44 9.5E-06 51.7 13.6 36 598-638 192-228 (236)
87 TIGR00963 secA preprotein tran 94.8 0.079 1.7E-06 67.6 8.6 98 802-900 386-510 (745)
88 COG0610 Type I site-specific r 94.1 0.18 3.9E-06 67.1 10.1 114 500-643 305-420 (962)
89 PRK09694 helicase Cas3; Provis 94.0 0.26 5.7E-06 64.6 11.1 76 553-645 411-489 (878)
90 TIGR01407 dinG_rel DnaQ family 93.7 0.41 8.9E-06 63.3 12.4 41 550-612 414-454 (850)
91 KOG0330 ATP-dependent RNA heli 93.4 0.36 7.8E-06 56.5 9.6 118 500-644 131-252 (476)
92 KOG0947 Cytoplasmic exosomal R 93.3 2.1 4.6E-05 55.3 16.8 41 872-913 685-726 (1248)
93 PRK12899 secA preprotein trans 92.7 0.52 1.1E-05 61.4 10.7 112 500-648 137-252 (970)
94 COG0513 SrmB Superfamily II DN 92.5 0.67 1.5E-05 57.8 11.0 110 501-638 102-217 (513)
95 COG1203 CRISPR-associated heli 92.1 0.82 1.8E-05 59.5 11.5 131 499-638 247-382 (733)
96 TIGR01970 DEAH_box_HrpB ATP-de 92.0 0.53 1.1E-05 61.7 9.6 26 885-910 311-337 (819)
97 COG1110 Reverse gyrase [DNA re 91.9 0.32 6.9E-06 63.0 7.1 86 499-609 126-214 (1187)
98 PF00628 PHD: PHD-finger; Int 91.7 0.059 1.3E-06 45.3 0.4 30 417-450 4-33 (51)
99 KOG1513 Nuclear helicase MOP-3 91.7 0.53 1.1E-05 59.1 8.5 149 551-729 367-540 (1300)
100 PRK12898 secA preprotein trans 91.7 0.84 1.8E-05 58.0 10.6 101 499-610 145-254 (656)
101 TIGR03117 cas_csf4 CRISPR-asso 91.6 0.88 1.9E-05 57.9 10.7 43 550-614 180-222 (636)
102 PRK11664 ATP-dependent RNA hel 91.4 0.74 1.6E-05 60.4 10.1 26 886-911 315-341 (812)
103 COG0514 RecQ Superfamily II DN 90.7 0.35 7.7E-06 60.4 5.9 131 498-655 57-195 (590)
104 PRK13104 secA preprotein trans 90.2 0.69 1.5E-05 60.2 8.0 101 500-636 125-229 (896)
105 KOG1802 RNA helicase nonsense 89.3 0.76 1.7E-05 57.0 6.9 36 498-537 454-490 (935)
106 KOG0335 ATP-dependent RNA heli 89.2 1.2 2.5E-05 54.3 8.4 86 499-611 153-239 (482)
107 cd00079 HELICc Helicase superf 88.4 0.28 6E-06 48.3 2.1 82 822-903 28-131 (131)
108 COG4098 comFA Superfamily II D 88.4 5.4 0.00012 46.6 12.4 41 598-638 202-245 (441)
109 COG3587 Restriction endonuclea 87.7 1.4 3E-05 56.4 8.0 125 499-635 105-241 (985)
110 KOG0338 ATP-dependent RNA heli 87.2 4.3 9.2E-05 49.5 11.1 121 497-647 251-378 (691)
111 PRK11131 ATP-dependent RNA hel 86.7 3.6 7.9E-05 56.1 11.5 61 552-636 163-228 (1294)
112 KOG0336 ATP-dependent RNA heli 86.1 2.4 5.1E-05 50.1 8.1 108 499-635 295-406 (629)
113 PRK13103 secA preprotein trans 86.0 1.7 3.7E-05 56.7 7.7 88 499-611 124-215 (913)
114 KOG0343 RNA Helicase [RNA proc 85.9 1.7 3.7E-05 53.1 7.0 119 500-646 143-265 (758)
115 smart00249 PHD PHD zinc finger 84.2 0.68 1.5E-05 37.3 2.0 23 428-450 11-33 (47)
116 KOG0951 RNA helicase BRR2, DEA 84.1 4.8 0.0001 53.7 10.2 114 500-646 366-492 (1674)
117 KOG1132 Helicase of the DEAD s 83.9 3.3 7.1E-05 53.4 8.6 25 359-383 42-66 (945)
118 PRK13107 preprotein translocas 83.3 4.5 9.7E-05 53.0 9.6 112 499-648 124-239 (908)
119 COG4581 Superfamily II RNA hel 82.4 6.7 0.00014 52.2 10.8 63 551-635 204-269 (1041)
120 PRK12904 preprotein translocas 81.3 3.6 7.8E-05 53.7 7.8 86 500-610 124-213 (830)
121 PRK04296 thymidine kinase; Pro 80.1 9.1 0.0002 41.4 9.4 37 597-635 77-114 (190)
122 PF06733 DEAD_2: DEAD_2; Inte 78.3 1.4 3E-05 46.8 2.4 46 547-613 114-160 (174)
123 PRK14873 primosome assembly pr 77.9 7.4 0.00016 50.1 9.1 107 499-637 189-304 (665)
124 TIGR01967 DEAH_box_HrpA ATP-de 76.6 9.2 0.0002 52.4 9.7 63 552-637 156-222 (1283)
125 TIGR00376 DNA helicase, putati 76.1 19 0.00042 46.3 12.1 41 593-638 356-396 (637)
126 COG1202 Superfamily II helicas 76.1 8.6 0.00019 47.6 8.3 114 498-635 261-381 (830)
127 KOG1803 DNA helicase [Replicat 75.9 9.9 0.00021 47.5 8.8 40 594-638 354-393 (649)
128 PF09848 DUF2075: Uncharacteri 75.4 9.4 0.0002 45.3 8.5 18 595-612 80-97 (352)
129 PRK12326 preprotein translocas 74.0 10 0.00022 48.8 8.6 103 499-637 120-226 (764)
130 KOG1844 PHD Zn-finger proteins 74.0 1.5 3.3E-05 54.5 1.5 36 412-450 85-120 (508)
131 KOG0339 ATP-dependent RNA heli 71.3 13 0.00028 45.4 8.1 110 497-635 294-410 (731)
132 KOG0345 ATP-dependent RNA heli 70.5 17 0.00036 44.3 8.7 110 500-635 81-197 (567)
133 COG0556 UvrB Helicase subunit 68.8 7.4 0.00016 47.9 5.5 32 499-530 58-90 (663)
134 smart00488 DEXDc2 DEAD-like he 67.8 3.1 6.7E-05 48.1 2.1 44 548-612 207-250 (289)
135 smart00489 DEXDc3 DEAD-like he 67.8 3.1 6.7E-05 48.1 2.1 44 548-612 207-250 (289)
136 KOG1973 Chromatin remodeling p 66.9 2.6 5.6E-05 48.4 1.2 49 411-488 217-268 (274)
137 PF13401 AAA_22: AAA domain; P 63.4 6.2 0.00013 39.0 3.0 35 600-636 89-125 (131)
138 PRK11747 dinG ATP-dependent DN 61.2 5.4 0.00012 51.8 2.7 48 548-614 215-262 (697)
139 PF07517 SecA_DEAD: SecA DEAD- 60.6 84 0.0018 36.2 11.7 87 499-610 119-209 (266)
140 PF07227 DUF1423: Protein of u 60.4 6.2 0.00013 47.6 2.7 77 413-522 129-208 (446)
141 PRK12906 secA preprotein trans 60.4 17 0.00037 47.5 6.9 87 499-610 122-212 (796)
142 KOG0348 ATP-dependent RNA heli 59.6 25 0.00053 43.5 7.4 106 501-636 214-341 (708)
143 PF02399 Herpes_ori_bp: Origin 58.8 25 0.00053 45.9 7.7 101 499-636 79-190 (824)
144 KOG4284 DEAD box protein [Tran 58.3 26 0.00057 44.2 7.4 117 500-645 95-217 (980)
145 KOG0924 mRNA splicing factor A 58.0 53 0.0012 41.8 10.0 36 881-916 668-704 (1042)
146 KOG0333 U5 snRNP-like RNA heli 56.3 22 0.00047 43.9 6.2 86 500-612 324-410 (673)
147 PF02562 PhoH: PhoH-like prote 56.0 9.6 0.00021 42.0 3.1 44 597-642 118-161 (205)
148 TIGR00604 rad3 DNA repair heli 55.1 6.8 0.00015 51.0 2.1 64 515-613 172-235 (705)
149 PRK10536 hypothetical protein; 53.9 12 0.00027 42.6 3.6 42 598-641 176-217 (262)
150 KOG0926 DEAH-box RNA helicase 53.7 23 0.0005 45.6 6.1 34 553-609 350-383 (1172)
151 PRK12902 secA preprotein trans 53.1 39 0.00085 44.6 8.2 87 499-610 127-217 (939)
152 KOG4323 Polycomb-like PHD Zn-f 50.9 5.5 0.00012 48.4 0.3 53 415-487 171-223 (464)
153 TIGR02881 spore_V_K stage V sp 48.9 36 0.00077 38.6 6.4 20 359-378 44-63 (261)
154 COG1198 PriA Primosomal protei 48.3 66 0.0014 42.0 9.2 106 499-637 246-360 (730)
155 KOG0347 RNA helicase [RNA proc 47.7 44 0.00096 41.5 7.0 112 500-635 265-385 (731)
156 KOG0340 ATP-dependent RNA heli 47.4 78 0.0017 37.6 8.6 121 500-644 77-201 (442)
157 COG5034 TNG2 Chromatin remodel 46.2 9 0.0002 42.9 1.0 48 411-487 219-269 (271)
158 KOG0342 ATP-dependent RNA heli 45.2 45 0.00098 41.0 6.6 110 500-635 156-270 (543)
159 KOG0351 ATP-dependent DNA heli 43.9 35 0.00076 45.7 5.9 137 496-657 302-451 (941)
160 PRK14964 DNA polymerase III su 43.6 1.8E+02 0.0039 36.4 11.7 39 598-639 116-158 (491)
161 TIGR02562 cas3_yersinia CRISPR 43.0 5.5E+02 0.012 35.2 16.2 82 550-646 560-644 (1110)
162 PRK07246 bifunctional ATP-depe 42.9 16 0.00034 48.5 2.6 41 549-612 410-450 (820)
163 PRK08074 bifunctional ATP-depe 42.7 15 0.00033 49.4 2.5 44 548-613 427-470 (928)
164 CHL00122 secA preprotein trans 42.4 55 0.0012 43.3 7.2 87 499-610 118-208 (870)
165 KOG1805 DNA replication helica 40.9 1.8E+02 0.0039 38.9 11.2 41 593-638 791-831 (1100)
166 KOG0353 ATP-dependent DNA heli 40.5 32 0.00069 40.5 4.2 131 498-649 134-273 (695)
167 PF00271 Helicase_C: Helicase 40.2 28 0.0006 31.3 3.1 17 879-895 61-78 (78)
168 KOG0948 Nuclear exosomal RNA h 37.0 61 0.0013 41.8 6.1 41 551-613 210-250 (1041)
169 PRK07764 DNA polymerase III su 36.1 1.1E+02 0.0024 40.8 8.7 20 361-380 41-60 (824)
170 TIGR00269 conserved hypothetic 35.3 60 0.0013 31.8 4.8 62 1063-1126 36-101 (104)
171 KOG1133 Helicase of the DEAD s 35.2 17 0.00038 46.0 1.2 56 525-613 308-363 (821)
172 PF13173 AAA_14: AAA domain 34.3 37 0.00079 34.0 3.2 41 598-639 61-101 (128)
173 KOG0337 ATP-dependent RNA heli 33.3 57 0.0012 39.4 4.8 106 499-636 91-205 (529)
174 PF05876 Terminase_GpA: Phage 33.1 1.5E+02 0.0033 37.7 9.0 56 592-647 128-190 (557)
175 PRK12900 secA preprotein trans 29.7 1.4E+02 0.003 40.2 7.9 99 511-646 196-294 (1025)
176 KOG0949 Predicted helicase, DE 27.6 86 0.0019 41.7 5.4 141 477-649 538-682 (1330)
177 PF13604 AAA_30: AAA domain; P 27.0 78 0.0017 34.4 4.4 39 598-638 93-132 (196)
178 KOG3259 Peptidyl-prolyl cis-tr 26.8 46 0.00099 34.5 2.3 60 321-383 7-66 (163)
179 PRK12901 secA preprotein trans 26.6 1.8E+02 0.004 39.3 8.2 100 802-903 609-737 (1112)
180 KOG0328 Predicted ATP-dependen 26.6 3.1E+02 0.0067 31.9 8.8 109 500-636 97-210 (400)
181 TIGR00595 priA primosomal prot 26.1 1.3E+02 0.0027 37.9 6.6 54 509-565 270-324 (505)
182 TIGR02880 cbbX_cfxQ probable R 25.6 92 0.002 36.0 4.9 21 359-379 60-80 (284)
183 PF12387 Peptidase_C74: Pestiv 25.6 61 0.0013 34.4 3.0 65 1060-1124 103-182 (200)
184 PLN03025 replication factor C 25.1 97 0.0021 36.2 5.1 60 598-657 99-159 (319)
185 PRK06647 DNA polymerase III su 25.1 2.5E+02 0.0055 35.8 9.0 20 361-380 42-61 (563)
186 COG1702 PhoH Phosphate starvat 24.9 34 0.00075 40.3 1.2 40 599-641 244-284 (348)
187 PRK07940 DNA polymerase III su 24.9 1.2E+02 0.0025 37.0 5.7 22 359-380 38-59 (394)
188 COG1875 NYN ribonuclease and A 24.7 52 0.0011 39.3 2.6 40 598-639 351-390 (436)
189 PRK12903 secA preprotein trans 24.3 1.8E+02 0.0039 38.7 7.4 100 802-903 407-535 (925)
190 KOG0344 ATP-dependent RNA heli 23.7 1.3E+02 0.0029 37.8 5.9 90 500-613 211-303 (593)
191 TIGR00631 uvrb excinuclease AB 23.6 1.4E+02 0.0029 38.9 6.3 25 499-523 55-80 (655)
192 PF13871 Helicase_C_4: Helicas 23.6 63 0.0014 37.3 3.0 55 867-923 86-142 (278)
193 PHA00673 acetyltransferase dom 23.4 1.1E+02 0.0023 32.4 4.4 45 598-642 87-134 (154)
194 KOG0334 RNA helicase [RNA proc 23.3 1.6E+02 0.0034 39.6 6.6 56 501-563 441-499 (997)
195 PRK07003 DNA polymerase III su 22.5 1E+02 0.0022 40.6 4.7 60 597-658 118-180 (830)
196 COG4646 DNA methylase [Transcr 21.4 47 0.001 40.4 1.4 32 625-656 472-503 (637)
197 CHL00181 cbbX CbbX; Provisiona 20.4 1.4E+02 0.0031 34.5 5.2 19 361-379 63-81 (287)
198 TIGR00596 rad1 DNA repair prot 20.3 5.6E+02 0.012 34.3 10.9 65 551-638 6-74 (814)
199 PF12340 DUF3638: Protein of u 20.1 1.9E+02 0.004 32.7 5.7 23 500-522 72-94 (229)
200 TIGR01447 recD exodeoxyribonuc 20.0 91 0.002 39.9 3.7 40 597-638 258-297 (586)
No 1
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-88 Score=828.02 Aligned_cols=1015 Identities=26% Similarity=0.275 Sum_probs=784.4
Q ss_pred CCCCCeEEEEcCcccccc--CCCchhhhhhccccccccc---cceeeecccccccceEEEEEEccccccccceeccCccc
Q 000892 45 DVDHPFFVEVNRTCWLLD--EHLDISEIVLTDLKLREEF---SGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPL 119 (1236)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1236)
+++.|+.++.+-+...+. +..+..++|++.++..+.+ +++..+-+..++..+ +|+.|++.+||.+++.||||+
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vit~~s~l~r~~~~~t~t~~~~~~~~~~~--~~~~~~~~n~v~~~~~~~~~~ 80 (1394)
T KOG0298|consen 3 KKYPLDESMSEDEEYIETWKDLPKNRVIVITKRSPLVRGVLLRTITSHFQIPAAQYG--TLLAYVSDNVVRFYAETYRRN 80 (1394)
T ss_pred CccchhhhhhhhHHHHHHHHhcCCCceEEEecCChhhhcceeeEEeecccchhhhcc--eeEeecchhHHHHHHhhhccc
Confidence 345566666655443332 4788999999999988776 555555555555555 999999999999999999999
Q ss_pred ccCCcchhhhhHhhhccccccceEEeecccCCCCccchhhHhhhhcceEEeeccCCCCcccccccceeeEEeccchhhhh
Q 000892 120 LSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDAC 199 (1236)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~ 199 (1236)
.|+.|++.+++....+.+ +++...++-+|+++.++.++.++...+.+++++-+.+ ........+++.-+...++.|
T Consensus 81 ~s~~d~~~~~~~~k~~~~-~~~es~~~~~~~~~~~~~s~~~~~~~~~~l~~ic~~~---Nq~r~t~~l~~~ki~~s~~s~ 156 (1394)
T KOG0298|consen 81 NSPMDGTVLCEDNKEVPP-ESPESPTLFSYGKKREVFSDNAVEHKGIELILICIPK---NQNRRTRYLKVRKIRQSSGSC 156 (1394)
T ss_pred CCccccceeeccccccCC-CCCCcchHHHhcccccccchHHHHhhcchhhhhcccc---cccccchhhhHHHHhccchhh
Confidence 999999999998887777 8899999999999999999999999999888764322 334455678888889999999
Q ss_pred hhhhhcchHHHHHHHHHHHhhcCCCcCCcccccccccccchhhhcccccccCccccccCCCCCHHHHHHhcccCCCCCCc
Q 000892 200 ESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPML 279 (1236)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~y~~i~~~~~~~~~ 279 (1236)
...+.++.+-|++.|...|.|.++..++....|+..-+... .........+-........+|-..++..+.+.......
T Consensus 157 ~~~lt~t~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~d-~e~~~~l~~~~k~t~~n~~~d~~~~~~~i~~l~~s~~~ 235 (1394)
T KOG0298|consen 157 ILVLTNTQTHVRKRLIREMIVGLQKLTLFFKDFPGSFEFKD-AEQEKVLKFELKTTSTNKLFDALYEKHRITVLVESERS 235 (1394)
T ss_pred hHhhhhhhhhHHHHHHHHHHhcccccccccccCCceeeech-HHHHHHHhhhhhhhhhhhhhhhHHhhhhccccchhccC
Confidence 99999999999999999999999999888777765322111 00001111111122234556766777766654433333
Q ss_pred cCCCCCcCCCChHHHHHHHHHHHHcccCCCCCC------chhhhccccCCCCCcccccCccccceeccCCCCccCCCCCC
Q 000892 280 EEDLPDLLPLLRPYQRRAAYWMVQREKGDSASS------SERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYT 353 (1236)
Q Consensus 280 ~~~~p~L~~~LrpYQ~~aV~WML~RE~~~~~~~------~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~ 353 (1236)
...+....+++|+||.+++.||.+||..-.... ......+..-++-.++.+.+-+..++ .
T Consensus 236 ~D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~~~~~~~l~--------------~ 301 (1394)
T KOG0298|consen 236 LDLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQFYSFEEELP--------------K 301 (1394)
T ss_pred chHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceecccccccch--------------h
Confidence 333456889999999999999999998543210 11111111111111222211111111 1
Q ss_pred CCCcccceeecCCCcchHHHHHHHHHHhcCCCCCCccccccccccchhhhhHHHhhhhhhhhhhcccccccccccccccc
Q 000892 354 SSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQ 433 (1236)
Q Consensus 354 ~~~vrGGILADEMGLGKTvq~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~cic~~~~~~~~~~g~~v~ 433 (1236)
.+...||.+|||||||||++-+|++..|+.+... ++........|.|+...+...+.+.|++
T Consensus 302 e~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~ 363 (1394)
T KOG0298|consen 302 ESLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKD 363 (1394)
T ss_pred ccCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhh
Confidence 2234589999999999999999999999877422 2333445567888888888888888888
Q ss_pred ccccccccccc-------ccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhhhccCCCCCCCcEEEEeC
Q 000892 434 CDICDAWQHAD-------CVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCP 506 (1236)
Q Consensus 434 c~~c~~w~h~~-------cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P 506 (1236)
|..|..|+++. |-|..... . -.+........+.|..|.+.....+.+..+|+||||||
T Consensus 364 ~~~~~~~~~~g~~~~~ade~~~qk~~--------------~-~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P 428 (1394)
T KOG0298|consen 364 EVLCSGDKKHGKRVQCADEMGWQKTS--------------E-KLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP 428 (1394)
T ss_pred HHhhcCCccCCcceeehhhhhccchH--------------H-HHHHHHhcccccchhhhhHHHhcccceeecCceEEECc
Confidence 88888887764 22111100 0 01112333455667777787788888899999999999
Q ss_pred CchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhccc
Q 000892 507 APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKR 586 (1236)
Q Consensus 507 ~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kr 586 (1236)
.+++.||-.||.+|+++. ++|+.|.|.++... ..+..+.+||||+|||++|+.++.|+ ...++.|.+|++++
T Consensus 429 ~aIl~QW~~EI~kH~~~~-lKv~~Y~Girk~~~-----~~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr 500 (1394)
T KOG0298|consen 429 NAILMQWFEEIHKHISSL-LKVLLYFGIRKTFW-----LSPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSR 500 (1394)
T ss_pred HHHHHHHHHHHHHhcccc-ceEEEEechhhhcc-----cCchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccC
Confidence 999999999999999854 79999999987653 35588899999999999999999885 56788899999999
Q ss_pred CCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCCChhHHHHHh
Q 000892 587 YPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 666 (1236)
Q Consensus 587 y~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~~~~~F~~~~ 666 (1236)
|+.+++||..+.|||||||||||+.+..|.+++|+.+|++.+||++||||||+ ++|||+||.||+..||+...+|.+.+
T Consensus 501 ~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v 579 (1394)
T KOG0298|consen 501 YMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTV 579 (1394)
T ss_pred CCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCcCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000892 667 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNIL 746 (1236)
Q Consensus 667 ~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~ 746 (1236)
..++... .....+..++...++|+.|.+|..++.+||+.+.++++.+++.|.++|+..+..|+.+++..+..++.+.+
T Consensus 580 ~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l 657 (1394)
T KOG0298|consen 580 DKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNL 657 (1394)
T ss_pred HHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhcc
Confidence 8877654 44567889999999999999999999999999999999999999999999999999999998888877654
Q ss_pred hccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhccchh
Q 000892 747 KRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV 826 (1236)
Q Consensus 747 ~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e~eea~rkvL 826 (1236)
.. ..+.+.+++.....++.+|++|||+||||+++.+++.+.... +++|+|..|+.+...++....|...
T Consensus 658 ~~---------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~ 726 (1394)
T KOG0298|consen 658 DN---------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLA 726 (1394)
T ss_pred cc---------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHH
Confidence 21 122344567778899999999999999999999888776554 8999999999999999999999999
Q ss_pred hhhhhHhhHHHHHHhHhH----HHHHHHHHHHHHHHHHhh-ccCCCCcceeEEecCCcCCcchhhhhhhhhccCCCCceE
Q 000892 827 MALNGLAGIALIEKNLSQ----AVSLYKEAMAVVEEHSED-FRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGC 901 (1236)
Q Consensus 827 ifsq~la~L~iIe~~l~~----a~~~y~~~l~~~~~~~~~-fr~D~~~~lh~~~Nl~dwnp~~d~QA~R~hRiGQ~k~V~ 901 (1236)
..+++++.+..+.+++.. ....|+..+.+..+..++ .-.|...+.|..+++..-....
T Consensus 727 ~~~~~~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~~~~~~~----------------- 789 (1394)
T KOG0298|consen 727 SSKNGLAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLLQASSLA----------------- 789 (1394)
T ss_pred HHhhhhHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhhcccccc-----------------
Confidence 999999999998888874 345566655544333322 1133333334444433100000
Q ss_pred EEEcccCCcccccchhHhhhhccccccCCCcccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 000892 902 SEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKY 981 (1236)
Q Consensus 902 VyRlit~~Tiee~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~y 981 (1236)
+-+......+++..-.+ ...-++....+.+ -.+.--|..++++|
T Consensus 790 ---------~sd~~~~~~~~~~~~~~---------------~s~~~~~~~~d~~------------~~~~~~~q~~~~kl 833 (1394)
T KOG0298|consen 790 ---------PSDRKLTELEHKKYQAQ---------------MSRLEWKYLEDET------------RVLYSLLQDLNEKL 833 (1394)
T ss_pred ---------chhhhHHHHHHHhhhhh---------------hccccchhhchhh------------HHHHHHHHHHHHHH
Confidence 00000001111111110 0000111111111 13667789999999
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhhcCccchHHHHHHHHHhhhccccccccccccccccc
Q 000892 982 LSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRS 1061 (1236)
Q Consensus 982 l~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 1061 (1236)
++++..+...++.+|...+.++.+.++.++.....||++.....+.+.++..+|.. |+.+++.
T Consensus 834 ~s~~~~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLra-----------------i~~~~~~ 896 (1394)
T KOG0298|consen 834 ESVSILKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELRA-----------------IAFRARF 896 (1394)
T ss_pred HHHHhhhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHHH-----------------HHhhhhc
Confidence 99999999999999999999999999999999999999999999999888888762 6778999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCChhhhhhcccccccccCCCCCccccccccchHHHHHHhhhcccc
Q 000892 1062 ISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKK 1141 (1236)
Q Consensus 1062 ~~gL~~~l~~~ld~L~~~R~~~~~~l~~L~~~~~~p~~~~Ve~a~~C~~C~~~~~~~~C~~C~~~~~f~~YE~~LF~~~~ 1141 (1236)
+.+++..|++..++|..++..+..+++++.+.|+.+...++.+...|-.|-...-+|.|.+|.+|..+..|+++.|+.+.
T Consensus 897 i~i~~l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~~~~~ 976 (1394)
T KOG0298|consen 897 IHIMKLKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHRRCRL 976 (1394)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999887
Q ss_pred cCCCc---ccHHHHHHHHhhhhccchhhcccCCCCCCCCCCCCCchhhcccccccceeEecCCchHHHHHHHHHHHHhhh
Q 000892 1142 SQGDI---ASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSVGNEEIKRRDVRETVVVSKSPSELEVILGVIKNYCKTQ 1218 (1236)
Q Consensus 1142 ~~~g~---~~~ee~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~se~e~~l~~i~~~~k~~ 1218 (1236)
-.+|. +=++|.+..|.+.++.+-+..++++..+...+| +|..++|.+
T Consensus 977 ~~~~~~~i~~~ce~~~~q~k~~~~~s~~~~l~~~~~~~ekS------------------------------i~~~~~~~~ 1026 (1394)
T KOG0298|consen 977 CLRRKSLILFECELFALQPKEDATVSESLELSSMEKSFEKS------------------------------IIAFLRKKQ 1026 (1394)
T ss_pred hhhhhHHHHHHHHHHhcCccccchhhhhhccchhhhcchhh------------------------------HHHHHHHHH
Confidence 77666 778999999999999997776777666555422 899999999
Q ss_pred hchhHHHhhhhhhhccc
Q 000892 1219 LGREAISASSKQLHILE 1235 (1236)
Q Consensus 1219 ~~~~~~~~~~~~l~~~e 1235 (1236)
+.++...+|++||++|+
T Consensus 1027 l~~e~~~~~t~~~~~l~ 1043 (1394)
T KOG0298|consen 1027 LFSEWKEEATPLLELLS 1043 (1394)
T ss_pred HHHHHHHhcCchHHHHH
Confidence 99999999999999985
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3.1e-81 Score=733.75 Aligned_cols=362 Identities=23% Similarity=0.349 Sum_probs=305.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.||+||+||.|++.||.+||.+|+| ++++++|+|.+..+....+ ..-.-..+||+||||++..++.
T Consensus 217 ~GPfLVi~P~StL~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r--~~~~~~~fdV~iTsYEi~i~dk---------- 282 (971)
T KOG0385|consen 217 PGPFLVIAPKSTLDNWMNEFKRFTP--SLNVVVYHGDKEERAALRR--DIMLPGRFDVCITSYEIAIKDK---------- 282 (971)
T ss_pred CCCeEEEeeHhhHHHHHHHHHHhCC--CcceEEEeCCHHHHHHHHH--HhhccCCCceEeehHHHHHhhH----------
Confidence 4899999999999999999999998 9999999999876532111 2222348999999999999873
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~ 657 (1236)
+.|.++.|.++|+||||+|||.+|..++.++.+.+.+|++|||||+||+|.|||+||+||.|+.|+
T Consensus 283 --------------~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~ 348 (971)
T KOG0385|consen 283 --------------SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFN 348 (971)
T ss_pred --------------HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhcc
Confidence 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhcCCCcCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000892 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1236)
Q Consensus 658 ~~~~F~~~~~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~ 737 (1236)
+...|..+|......++.+.+.+||.+++||+|||.|.+|... |||+.+.+++|.||+.|+++|..++.+-....
T Consensus 349 ~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~--- 423 (971)
T KOG0385|consen 349 SAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDAL--- 423 (971)
T ss_pred CHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhh---
Confidence 9999999999877778888999999999999999999999655 99999999999999999999999875421110
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccCCCCCHHH----------HH
Q 000892 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDE----------IL 807 (1236)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~ee----------lL 807 (1236)
+ + .+ ..+...+++.+|+||+|||||+|+.+... +.+.+.++ +|
T Consensus 424 --------n-----~---~~--------~~~k~kL~NI~mQLRKccnHPYLF~g~eP---g~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 424 --------N-----G---EG--------KGEKTKLQNIMMQLRKCCNHPYLFDGAEP---GPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred --------c-----c---cc--------cchhhHHHHHHHHHHHhcCCccccCCCCC---CCCCCcchHHHhcCcceehH
Confidence 0 0 00 11357899999999999999999887321 23333333 67
Q ss_pred HHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHHHH-----HHHHHHhhccCCCCcc-e--------eE
Q 000892 808 MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLLN-I--------HL 873 (1236)
Q Consensus 808 ~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~l~-----~~~~~~~~fr~D~~~~-l--------h~ 873 (1236)
+.|+.+++..| |+||||||++.|||||+++.......|-+..+ .+.+.++.|+.++.-. + .+
T Consensus 477 DkLL~~Lk~~G----hRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 477 DKLLPKLKEQG----HRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred HHHHHHHHhCC----CeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 88888777777 99999999999999999998887777766543 6677778888877322 1 44
Q ss_pred EecCC----------cCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhc
Q 000892 874 HHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1236)
Q Consensus 874 ~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~~ 923 (1236)
+.||+ ||||++|.||+ |||||||+|+|.||||+|++||||+|++.+-+|.
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 55665 89999999999 9999999999999999999999999998877654
No 3
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.2e-76 Score=693.21 Aligned_cols=391 Identities=20% Similarity=0.270 Sum_probs=307.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccc--------ccchhhhccCccEEEEeHHHHhhhccc
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDT--------SIMDISELVGADIVLTTYDVLKEDLSH 569 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~--------~~~~~~~l~~~DVVITTYe~L~~d~~~ 569 (1236)
.+|+|||||++|+.||++||.+|+| .++|.+|||......... ............|+||||+.++..-
T Consensus 255 ~~paLIVCP~Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~-- 330 (923)
T KOG0387|consen 255 TKPALIVCPATIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG-- 330 (923)
T ss_pred cCceEEEccHHHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC--
Confidence 3899999999999999999999998 899999999866311000 0011233345679999999998753
Q ss_pred CCCCcccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhh
Q 000892 570 DSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1236)
Q Consensus 570 ~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~ 649 (1236)
.++..+.|++|||||||+|||++|+.+.+|++|++.+|++||||||||+|.|||+||+
T Consensus 331 ----------------------d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfD 388 (923)
T KOG0387|consen 331 ----------------------DDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFD 388 (923)
T ss_pred ----------------------cccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhh
Confidence 2588999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHhcCCCcCCcc------------chHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCH
Q 000892 650 FLKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSP 717 (1236)
Q Consensus 650 FL~p~~f~~~~~F~~~~~~pi~~g~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~ 717 (1236)
|+.|+.+|+...|.+.|..||..|.. ...-.|+.+++||+|||+|+||.. +.||.|.++|++|.||+
T Consensus 389 Fv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~ 467 (923)
T KOG0387|consen 389 FVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTK 467 (923)
T ss_pred hccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccH
Confidence 99999999999999999999998754 334579999999999999999987 67999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCccccccc
Q 000892 718 IEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ 797 (1236)
Q Consensus 718 ~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~ 797 (1236)
.|+.+|+++.+.- ++ ..+.+ . ...+|..+..||++||||.|.........
T Consensus 468 ~QR~~Y~~fl~s~--~v----~~i~n----g--------------------~~~~l~Gi~iLrkICnHPdll~~~~~~~~ 517 (923)
T KOG0387|consen 468 LQRRLYQRFLNSS--EV----NKILN----G--------------------KRNCLSGIDILRKICNHPDLLDRRDEDEK 517 (923)
T ss_pred HHHHHHHHHhhhH--HH----HHHHc----C--------------------CccceechHHHHhhcCCcccccCcccccc
Confidence 9999999987631 11 22111 1 13467788899999999999876421111
Q ss_pred CCC--------CCHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhH-HHHHHHHHH-----HHHHHHHhhc
Q 000892 798 QSP--------LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ-AVSLYKEAM-----AVVEEHSEDF 863 (1236)
Q Consensus 798 ~~~--------~t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~-a~~~y~~~l-----~~~~~~~~~f 863 (1236)
.++ .-.-+++..|+..+...+ +++|+|+|...||+|||..+.. ....|.... ..++..+++|
T Consensus 518 ~~~D~~g~~k~sGKm~vl~~ll~~W~kqg----~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 518 QGPDYEGDPKRSGKMKVLAKLLKDWKKQG----DRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cCCCcCCChhhcchHHHHHHHHHHHhhCC----CEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 110 112368888888888777 8999999999999999998874 344555443 4888999999
Q ss_pred cCCCCcce--------eEEecCC----------cCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhcc
Q 000892 864 RLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1236)
Q Consensus 864 r~D~~~~l--------h~~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~~~ 924 (1236)
+.|....+ ..+.||+ ||||..|+||. |||||||+|+|.||||+|.|||||+|| .|+|
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY----~rQI 669 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY----HRQI 669 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH----HHHH
Confidence 98876444 4455665 79999999999 999999999999999999999999999 5556
Q ss_pred ccccCCCcccCCCCCCCCccccccCCCCCCC
Q 000892 925 SREENSDFTDAEDPSGHLSDLSENGFNGDRK 955 (1236)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1236)
=++.+++... .-+.+.-++..+.+...|.
T Consensus 670 ~Kq~Ltn~il--~~p~q~RfF~~~dl~dLFs 698 (923)
T KOG0387|consen 670 FKQFLTNRIL--KNPEQRRFFKGNDLHDLFS 698 (923)
T ss_pred HHHHHHHHHh--cCHHHhhhcccccHHHHhC
Confidence 6665554431 1122333444444444433
No 4
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.1e-74 Score=705.56 Aligned_cols=369 Identities=20% Similarity=0.301 Sum_probs=299.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccc---chh-hhccCccEEEEeHHHHhhhcccCCCC
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSI---MDI-SELVGADIVLTTYDVLKEDLSHDSDR 573 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~---~~~-~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1236)
.||+|||+|.|++.+|+.||..|+ .+++++|+|....+.-.+.. ... ...-+++++||||+++.++..
T Consensus 420 ~gpflvvvplst~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~----- 491 (1373)
T KOG0384|consen 420 HGPFLVVVPLSTITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA----- 491 (1373)
T ss_pred cCCeEEEeehhhhHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh-----
Confidence 489999999999999999999999 69999999986553211100 000 122369999999999998753
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCC
Q 000892 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1236)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p 653 (1236)
.|..++|.++++||||++||..|+++..+..+...||+++||||+||++.|||+|++||.|
T Consensus 492 -------------------~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 492 -------------------ELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred -------------------hhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcCCCcCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 000892 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGY 733 (1236)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~ 733 (1236)
+.|.+...|...+ .......+..|+.+|+|+||||.|+||. ..|||+.|.|+.|+||+.|+++|+.++++....
T Consensus 553 ~kf~~~~~f~~~~----~~~~e~~~~~L~~~L~P~~lRr~kkdve--kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~ 626 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF----DEETEEQVRKLQQILKPFLLRRLKKDVE--KSLPPKEETILRVELSDLQKQYYKAILTKNFSA 626 (1373)
T ss_pred CCCCcHHHHHHhh----cchhHHHHHHHHHHhhHHHHHHHHhhhc--cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHH
Confidence 9999999998877 3355677899999999999999999994 459999999999999999999999998864432
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccCCC--CCHHHHHHH--
Q 000892 734 AREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP--LSMDEILMV-- 809 (1236)
Q Consensus 734 a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~--~t~eelL~~-- 809 (1236)
. .+ | ..+ ....+|+.+|.||+|||||+|+.+.-....... ...++.|..
T Consensus 627 L------------tK---G---~~g---------~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 627 L------------TK---G---AKG---------STPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred H------------hc---c---CCC---------CCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 2 11 1 011 124799999999999999999876543221111 112332321
Q ss_pred -------HHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHHHH-----HHHHHHhhccCCC---Ccce---
Q 000892 810 -------LIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDP---LLNI--- 871 (1236)
Q Consensus 810 -------Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~l~-----~~~~~~~~fr~D~---~~~l--- 871 (1236)
||+++.....+.+|+||||||++.|||||.+++......|.+..+ +++..++.|+... |.+|
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLST 759 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLST 759 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEec
Confidence 233444444444599999999999999999999999999988765 6666677777644 3333
Q ss_pred ---eEEecCC----------cCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhcccc
Q 000892 872 ---HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR 926 (1236)
Q Consensus 872 ---h~~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~~~~~ 926 (1236)
.++.||+ ||||++|+||| |||||||+|.|+||||||++||||-|++.+|+|+|-.
T Consensus 760 RAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD 828 (1373)
T KOG0384|consen 760 RAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLD 828 (1373)
T ss_pred ccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhH
Confidence 6677887 89999999999 9999999999999999999999999999999999854
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.9e-73 Score=688.74 Aligned_cols=377 Identities=23% Similarity=0.326 Sum_probs=305.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
..|.|||||++|..+|+.|+.+|+| .|+|..|.|....+.. ......+++|+||||+++++|+.
T Consensus 1031 ~~PSLIVCPsTLtGHW~~E~~kf~p--fL~v~~yvg~p~~r~~-----lR~q~~~~~iiVtSYDv~RnD~d--------- 1094 (1549)
T KOG0392|consen 1031 RLPSLIVCPSTLTGHWKSEVKKFFP--FLKVLQYVGPPAERRE-----LRDQYKNANIIVTSYDVVRNDVD--------- 1094 (1549)
T ss_pred cCCeEEECCchhhhHHHHHHHHhcc--hhhhhhhcCChHHHHH-----HHhhccccceEEeeHHHHHHHHH---------
Confidence 3589999999999999999999998 7999999998765432 44566778999999999999975
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~ 657 (1236)
.|.++.|.++||||+|.|||..++.++++++|.+.||++||||||||++.|||+||+||.|+++|
T Consensus 1095 ---------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLG 1159 (1549)
T KOG0392|consen 1095 ---------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLG 1159 (1549)
T ss_pred ---------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccC
Confidence 48899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhcCCCcCCc------------cchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHH
Q 000892 658 ISRWWIEVIRDPYENGD------------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 725 (1236)
Q Consensus 658 ~~~~F~~~~~~pi~~g~------------~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~ 725 (1236)
+...|.+.|..|+.... .-+++.||+.+=|||+||+|+||+.+ ||||..+.++|+|||.|+++|+.
T Consensus 1160 tEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D--LPpKIIQDyyCeLs~lQ~kLY~d 1237 (1549)
T KOG0392|consen 1160 TEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD--LPPKIIQDYYCELSPLQKKLYRD 1237 (1549)
T ss_pred cHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhheeeccCHHHHHHHHH
Confidence 99999999999997521 25788999999999999999999887 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcc----ccccc----
Q 000892 726 QHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG----LRSLQ---- 797 (1236)
Q Consensus 726 l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~----~~~l~---- 797 (1236)
+.++........ ..++..+. . + ...++++.|..||+.|+||.|+-.. +....
T Consensus 1238 f~~~~k~~~~~~------------~d~~~~S~---g---t--~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~ 1297 (1549)
T KOG0392|consen 1238 FVKKAKQCVSSQ------------IDGGEESL---G---T--DKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLA 1297 (1549)
T ss_pred HHHHhccccccc------------cccchhcc---C---c--chHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHH
Confidence 876522111110 00100010 1 1 2689999999999999999986542 11100
Q ss_pred --CCCC------CHHHHHHHHHHHHHHhhh----------hhccchhhhhhhHhhHHHHHHhHhHHHH-H--HHHHH---
Q 000892 798 --QSPL------SMDEILMVLIGKTKIEGE----------EALRKLVMALNGLAGIALIEKNLSQAVS-L--YKEAM--- 853 (1236)
Q Consensus 798 --~~~~------t~eelL~~Ll~~~~~e~e----------ea~rkvLifsq~la~L~iIe~~l~~a~~-~--y~~~l--- 853 (1236)
.+.+ ..-..|..|+..|-..-. -.+|++|||+|+..|||++++++-++-. . |-+..
T Consensus 1298 ~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSV 1377 (1549)
T KOG0392|consen 1298 HFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSV 1377 (1549)
T ss_pred HhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCC
Confidence 0000 112355666655543311 2689999999999999999999876622 1 33433
Q ss_pred --HHHHHHHhhccCCCCcce--------eEEecCC----------cCCcchhhhhh-hhhccCCCCceEEEEcccCCccc
Q 000892 854 --AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIE 912 (1236)
Q Consensus 854 --~~~~~~~~~fr~D~~~~l--------h~~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tie 912 (1236)
+.|.+.+++|+.||...+ ..+.||+ |||||+|.||| |||||||+|.|+||||||+||+|
T Consensus 1378 pp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1378 PPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred CcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 388999999999985332 4578888 99999999999 99999999999999999999999
Q ss_pred ccchhHhhhhccccc
Q 000892 913 TCDENARKCQRVSRE 927 (1236)
Q Consensus 913 e~i~~~~k~~~~~~~ 927 (1236)
||||.+||=|+---+
T Consensus 1458 EKVMgLQkFKmnvAn 1472 (1549)
T KOG0392|consen 1458 EKVMGLQKFKMNVAN 1472 (1549)
T ss_pred HHHhhHHHHhhHHHH
Confidence 999999998764433
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=9.5e-71 Score=648.22 Aligned_cols=377 Identities=21% Similarity=0.267 Sum_probs=295.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.||+|||||+|++.||.+||.+||| +|+|..|+|....|...+.... ..-..|||++|||..+...-+ +
T Consensus 448 ~gpHLVVvPsSTleNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~-~~~~~ydVllTTY~la~~~kd--------D 516 (941)
T KOG0389|consen 448 PGPHLVVVPSSTLENWLREFAKWCP--SLKVEPYYGSQDERRELRERIK-KNKDDYDVLLTTYNLAASSKD--------D 516 (941)
T ss_pred CCCcEEEecchhHHHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHh-ccCCCccEEEEEeecccCChH--------H
Confidence 3899999999999999999999998 9999999999876543322222 222389999999999875321 1
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~ 657 (1236)
.+.|....|++||.||||++||..|.+++.+..++|.+|++|||||+||+|.||++||.|+.|..|.
T Consensus 517 -------------Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~ 583 (941)
T KOG0389|consen 517 -------------RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFD 583 (941)
T ss_pred -------------HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhh
Confidence 2468889999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ch-hHHHHHhcCCCc-CCc-------cchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 000892 658 IS-RWWIEVIRDPYE-NGD-------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHE 728 (1236)
Q Consensus 658 ~~-~~F~~~~~~pi~-~g~-------~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e 728 (1236)
+. ..+...|...-. .++ .+++.+.+.+++||+|||.|.+|+++ ||||..+|.+|+|+..|+.+|+.+.+
T Consensus 584 ~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~--LPpK~~~Ie~c~mse~Q~~~Y~~~~~ 661 (941)
T KOG0389|consen 584 SSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ--LPPKIQRIEYCEMSEKQKQLYDELIE 661 (941)
T ss_pred ccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCccceeEeeecchHHHHHHHHHHH
Confidence 65 444444432211 122 24677888999999999999999887 99999999999999999999998866
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCccccc-----c-------
Q 000892 729 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRS-----L------- 796 (1236)
Q Consensus 729 ~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~-----l------- 796 (1236)
... ....+. +.+. .... -+.||+||+++|||-|...-... +
T Consensus 662 ~~~-----------~~~~~~------~~ns---------~~~~-~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e 714 (941)
T KOG0389|consen 662 LYD-----------VKLNEV------SKNS---------ELKS-GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNE 714 (941)
T ss_pred HHh-----------hhcccc------cccc---------cccc-chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCc
Confidence 420 000000 1110 0011 35799999999999985432110 0
Q ss_pred ---------------------------------cCCCC--------CHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhH
Q 000892 797 ---------------------------------QQSPL--------SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835 (1236)
Q Consensus 797 ---------------------------------~~~~~--------t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L 835 (1236)
.+-.+ ..-..|..|+.+++.+| ++||+||||+.||
T Consensus 715 ~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G----~RVLiFSQFTqmL 790 (941)
T KOG0389|consen 715 PAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG----DRVLIFSQFTQML 790 (941)
T ss_pred hhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC----CEEEEeeHHHHHH
Confidence 00000 01126677888777777 9999999999999
Q ss_pred HHHHHhHhHHHHHHHHHHH-----HHHHHHhhccCCCCcce--------eEEecCC----------cCCcchhhhhh-hh
Q 000892 836 ALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-EL 891 (1236)
Q Consensus 836 ~iIe~~l~~a~~~y~~~l~-----~~~~~~~~fr~D~~~~l--------h~~~Nl~----------dwnp~~d~QA~-R~ 891 (1236)
||||-.+......|.+..+ .|+..+++|+.|...++ ..+.||+ ++||.+|.||. ||
T Consensus 791 DILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRc 870 (941)
T KOG0389|consen 791 DILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRC 870 (941)
T ss_pred HHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHH
Confidence 9999999888777776654 78899999999875443 3344444 69999999999 99
Q ss_pred hccCCCCceEEEEcccCCcccccchhHhhhhccccccCCC
Q 000892 892 SQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSD 931 (1236)
Q Consensus 892 hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~~~~~~~~~~ 931 (1236)
||+||+|+|+||||||++||||.|+.++|+|..-+...++
T Consensus 871 HRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~ 910 (941)
T KOG0389|consen 871 HRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTE 910 (941)
T ss_pred HhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhcc
Confidence 9999999999999999999999999999999887776643
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.9e-69 Score=680.78 Aligned_cols=364 Identities=20% Similarity=0.253 Sum_probs=291.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.+|+|||||+|++.||.+||.+|+| .+++++|+|....+.... ........+|||||||+++.++.
T Consensus 219 ~gp~LIVvP~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~--~~~~~~~~~dVvITSYe~l~~e~---------- 284 (1033)
T PLN03142 219 TGPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQR--EELLVAGKFDVCVTSFEMAIKEK---------- 284 (1033)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHH--HHHhcccCCCcceecHHHHHHHH----------
Confidence 4799999999999999999999997 899999999765431100 01122357999999999998864
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~ 657 (1236)
..|..+.|++|||||||+|||..|+++++++.+++.+||+|||||+||++.|||+||+||.|+.|+
T Consensus 285 --------------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~ 350 (1033)
T PLN03142 285 --------------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFS 350 (1033)
T ss_pred --------------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCC
Confidence 247888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhcCCCcCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000892 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1236)
Q Consensus 658 ~~~~F~~~~~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~ 737 (1236)
+...|..+|..+...+....+..|+.+++|||+||+|++|... |||+.+.+++|.||+.|+++|+.+.......+
T Consensus 351 s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~--LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l--- 425 (1033)
T PLN03142 351 SAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG--LPPKKETILKVGMSQMQKQYYKALLQKDLDVV--- 425 (1033)
T ss_pred CHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh--CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH---
Confidence 9999999998765556667889999999999999999999655 99999999999999999999998876432111
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccC-------CCCCHHHHHHHH
Q 000892 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ-------SPLSMDEILMVL 810 (1236)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~-------~~~t~eelL~~L 810 (1236)
+ . + .....+++.+++||++|+||+|+.+....... .....-.+|+.|
T Consensus 426 -~--------~---------g--------~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 426 -N--------A---------G--------GERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred -h--------c---------c--------ccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 0 0 0 01346889999999999999997643321100 001122456666
Q ss_pred HHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHH-----HHHHHHHHHhhccCCCCc----------------
Q 000892 811 IGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE-----AMAVVEEHSEDFRLDPLL---------------- 869 (1236)
Q Consensus 811 l~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~-----~l~~~~~~~~~fr~D~~~---------------- 869 (1236)
+.+++.. +++||||||++.+|++|++.+......|.. ....++..++.|+.+...
T Consensus 480 L~~Lk~~----g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 480 LPKLKER----DSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHhc----CCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 6666554 489999999999999999988655433322 234778888888764321
Q ss_pred ----ceeEEecCCcCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhccc
Q 000892 870 ----NIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVS 925 (1236)
Q Consensus 870 ----~lh~~~Nl~dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~~~~ 925 (1236)
..+++|.+ +|||+++.||+ |||||||+++|.||||+|+|||||+|++.+.+|..-
T Consensus 556 Lt~Ad~VIiyD~-dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 556 LATADIVILYDS-DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred hhhCCEEEEeCC-CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 11334443 69999999999 999999999999999999999999999998877653
No 8
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.1e-68 Score=637.31 Aligned_cols=232 Identities=25% Similarity=0.435 Sum_probs=200.5
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
||.|||||.|++-||+-||++|+| +++++.|.|..+.+...+. ....-..|.|.||||.++..++.
T Consensus 666 GPHLIVVpTsviLnWEMElKRwcP--glKILTYyGs~kErkeKRq--gW~kPnaFHVCItSYklv~qd~~---------- 731 (1958)
T KOG0391|consen 666 GPHLIVVPTSVILNWEMELKRWCP--GLKILTYYGSHKERKEKRQ--GWAKPNAFHVCITSYKLVFQDLT---------- 731 (1958)
T ss_pred CCceEEeechhhhhhhHHHhhhCC--cceEeeecCCHHHHHHHhh--cccCCCeeEEeehhhHHHHhHHH----------
Confidence 899999999999999999999998 8999999999877543221 12233458899999999999863
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCCC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~~ 658 (1236)
.|.+..|.++||||||+|||.+|++++++..+++.+|++|||||+||++.|||+|++||.|..|.+
T Consensus 732 --------------AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~s 797 (1958)
T KOG0391|consen 732 --------------AFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFAS 797 (1958)
T ss_pred --------------HHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhh
Confidence 488899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCcC---C----ccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Q 000892 659 SRWWIEVIRDPYEN---G----DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCV 731 (1236)
Q Consensus 659 ~~~F~~~~~~pi~~---g----~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~ 731 (1236)
...|+.+|.+|... + +...+.+||++++||+|||+|.||.++ ||.|.|+|++|.||..|+.+|+.+..+..
T Consensus 798 hd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ--lpkKyEHvv~CrLSkRQR~LYDDfmsq~~ 875 (1958)
T KOG0391|consen 798 HDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ--LPKKYEHVVKCRLSKRQRALYDDFMSQPG 875 (1958)
T ss_pred hhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh--cchhhhhheeeehhhhHHHHHHHHhhccc
Confidence 99999999998865 2 235678999999999999999999665 99999999999999999999998754311
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCC
Q 000892 732 GYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQV 788 (1236)
Q Consensus 732 ~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L 788 (1236)
. +. .+...+..+|++.||+||++||||-|
T Consensus 876 T---------Ke-------------------tLkSGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 876 T---------KE-------------------TLKSGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred h---------hh-------------------HhhcCchhHHHHHHHHHHHHcCCCCc
Confidence 1 00 11122357899999999999999987
No 9
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.7e-66 Score=604.95 Aligned_cols=397 Identities=25% Similarity=0.364 Sum_probs=295.2
Q ss_pred cEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccchh
Q 000892 500 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 579 (1236)
Q Consensus 500 ~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~ 579 (1236)
+||||||.||+.||..||++-+....|+|++|||..+. .+.+..+.+||||||||..+.+.-.....
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r------~i~~~~L~~YDvViTTY~lva~~~~~e~~------- 451 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKR------EISAKELRKYDVVITTYNLVANKPDDELE------- 451 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccc------cCCHHHHhhcceEEEeeeccccCCchhhh-------
Confidence 69999999999999999999998889999999998752 34788899999999999999872110000
Q ss_pred hhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCCCh
Q 000892 580 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSIS 659 (1236)
Q Consensus 580 ~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~~~ 659 (1236)
-..-.+||..|.|.||||||||.|||++|+.+.+++.|.+.+|||||||||||++-|+|+|+.||+..||++.
T Consensus 452 -------~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~ 524 (901)
T KOG4439|consen 452 -------EGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL 524 (901)
T ss_pred -------cccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH
Confidence 0112378999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCCCcCCccchHHHHHHHHHhhhhhcccccccc---cCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000892 660 RWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSD---ELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1236)
Q Consensus 660 ~~F~~~~~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~---eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~ 736 (1236)
..|++.+..+-. ...+++.-+.++.||||||..... ...||++...++.++|+..|...|+-+.+........
T Consensus 525 ~~Wke~i~~~s~----~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq 600 (901)
T KOG4439|consen 525 KQWKENIDNMSK----GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQ 600 (901)
T ss_pred HHHHHhccCccc----cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHH
Confidence 999998865432 345678888999999999998643 3469999999999999999999999887765444433
Q ss_pred HHHHHHHHHhhccCCCCC----------CCCCccC---c-----ccchhhHHHHHHHHHHHHHHccCCCCCCcccccccC
Q 000892 737 VIQRLKDNILKRNVPGHA----------SSDALYN---P-----IITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ 798 (1236)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~----------~~~~~~~---~-----~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~ 798 (1236)
++.. -..+.-.+.+ ...+... + -......+.||..|+||||+||||.+...++.....
T Consensus 601 ~L~~----~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~ 676 (901)
T KOG4439|consen 601 FLLQ----REDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEF 676 (901)
T ss_pred HHHh----hhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHh
Confidence 3222 1111111111 0011000 0 011233567999999999999999765444332100
Q ss_pred ---CCC-C---------------------------------HHH---------HHHHHHHHHHHhhhhhccchhhhhhhH
Q 000892 799 ---SPL-S---------------------------------MDE---------ILMVLIGKTKIEGEEALRKLVMALNGL 832 (1236)
Q Consensus 799 ---~~~-t---------------------------------~ee---------lL~~Ll~~~~~e~eea~rkvLifsq~l 832 (1236)
+.+ + .++ -+...+..+.......-.+++|.||++
T Consensus 677 ~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwt 756 (901)
T KOG4439|consen 677 QMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWT 756 (901)
T ss_pred hhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHH
Confidence 000 0 000 011112222222234457999999999
Q ss_pred hhHHHHHHhHhHHHHHHHHH-----HHHHHHHHhhccCCCC---------cceeEEecCC----------cCCcchhhhh
Q 000892 833 AGIALIEKNLSQAVSLYKEA-----MAVVEEHSEDFRLDPL---------LNIHLHHNLT----------EILPMVANCA 888 (1236)
Q Consensus 833 a~L~iIe~~l~~a~~~y~~~-----l~~~~~~~~~fr~D~~---------~~lh~~~Nl~----------dwnp~~d~QA 888 (1236)
.+|.+++..+..-...|... ...+++.++.|+...- ..-.++.||. .|||+-+.||
T Consensus 757 svLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQA 836 (901)
T KOG4439|consen 757 SVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQA 836 (901)
T ss_pred HHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHH
Confidence 99999999998877776543 3466777777664432 1224455554 6999999999
Q ss_pred h-hhhccCCCCceEEEEcccCCcccccchhHhhhhcc
Q 000892 889 T-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1236)
Q Consensus 889 ~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~~~ 924 (1236)
. |++|+||+|+|+|||++++||||++|+.+|..|.-
T Consensus 837 cDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKld 873 (901)
T KOG4439|consen 837 CDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLD 873 (901)
T ss_pred HHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999988753
No 10
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-66 Score=583.43 Aligned_cols=391 Identities=28% Similarity=0.379 Sum_probs=299.7
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.|||||||.-.+.||.+||.+|+. |++++++|||.++.. ...++..||+|+|||.++.+.+.... .|-
T Consensus 232 a~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~~R~~-------nikel~~YDvVLTty~vvEs~yRk~~---~Gf- 299 (791)
T KOG1002|consen 232 APTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGAKRDK-------NIKELMNYDVVLTTYAVVESVYRKQD---YGF- 299 (791)
T ss_pred CCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEecccccC-------CHHHhhcCcEEEEecHHHHHHHHhcc---ccc-
Confidence 579999999999999999999997 899999999988753 67889999999999999998765311 110
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCCC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~~ 658 (1236)
|...-..+.+++|..+.|.||||||||.||+..|.+++|+..|.+.+||||||||+||++.|||+|++||+..||..
T Consensus 300 ---rrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsy 376 (791)
T KOG1002|consen 300 ---RRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSY 376 (791)
T ss_pred ---cccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchh
Confidence 11111224458999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred h-------------------------------hHHHHHhcCCCcCC-----ccchHHHHHHHHHhhhhhcccccccccCC
Q 000892 659 S-------------------------------RWWIEVIRDPYENG-----DVGAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1236)
Q Consensus 659 ~-------------------------------~~F~~~~~~pi~~g-----~~~~~~~L~~lL~~~mLRRtK~dV~~eL~ 702 (1236)
+ -+|......||... +..+....+.+++.+|+||||-.-+++|.
T Consensus 377 yfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLg 456 (791)
T KOG1002|consen 377 YFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLG 456 (791)
T ss_pred hhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 3 24555556666652 22456678899999999999999999999
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 000892 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1236)
Q Consensus 703 LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQi 782 (1236)
|||+...+..=-|+.+|..+|+.++.........++.. | .. -.++++|+..|+||||+
T Consensus 457 LPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyiee-----------G-----vv------lNNYAnIF~LitRmRQ~ 514 (791)
T KOG1002|consen 457 LPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEE-----------G-----VV------LNNYANIFTLITRMRQA 514 (791)
T ss_pred CCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhh-----------h-----hh------hhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999987543322221111 1 11 23478999999999999
Q ss_pred ccCCCCCCcccc-cc---cC------------------C------------------------------CC---------
Q 000892 783 CCHPQVGSSGLR-SL---QQ------------------S------------------------------PL--------- 801 (1236)
Q Consensus 783 C~HP~L~~~~~~-~l---~~------------------~------------------------------~~--------- 801 (1236)
..||+|+..... .+ .. + ++
T Consensus 515 aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 515 ADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred ccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence 999998543110 00 00 0 00
Q ss_pred -----------------CHHH-----HHHHHHHHHHHhh-hhhccchhhhhhhHhhHHHHHHhHhHHHHHHHH-----HH
Q 000892 802 -----------------SMDE-----ILMVLIGKTKIEG-EEALRKLVMALNGLAGIALIEKNLSQAVSLYKE-----AM 853 (1236)
Q Consensus 802 -----------------t~ee-----lL~~Ll~~~~~e~-eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~-----~l 853 (1236)
.|++ -++.|++++.--. .+---|-+|||||+.|||+|+-.+.++....-+ +.
T Consensus 595 ek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~ 674 (791)
T KOG1002|consen 595 EKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSP 674 (791)
T ss_pred hhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCCh
Confidence 0100 1133333321111 112236789999999999999998888554222 23
Q ss_pred HHHHHHHhhccCCCCcce--------eEEecCC----------cCCcchhhhhh-hhhccCCCCceEEEEcccCCccccc
Q 000892 854 AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETC 914 (1236)
Q Consensus 854 ~~~~~~~~~fr~D~~~~l--------h~~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~ 914 (1236)
..+.+.++.|..|+...+ .+-.||. ||||+++-||+ |+|||||.|||.|-||+-++||||+
T Consensus 675 ~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~k 754 (791)
T KOG1002|consen 675 AARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEK 754 (791)
T ss_pred HHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHH
Confidence 467777888888886443 5566766 89999999999 9999999999999999999999999
Q ss_pred chhHhhhhcccc
Q 000892 915 DENARKCQRVSR 926 (1236)
Q Consensus 915 i~~~~k~~~~~~ 926 (1236)
|.++||+|.---
T Consensus 755 IieLQeKKa~mi 766 (791)
T KOG1002|consen 755 IIELQEKKANMI 766 (791)
T ss_pred HHHHHHHHhhhh
Confidence 999999975433
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-67 Score=608.73 Aligned_cols=357 Identities=24% Similarity=0.310 Sum_probs=294.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch----hhhccCccEEEEeHHHHhhhcccCCCC
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD----ISELVGADIVLTTYDVLKEDLSHDSDR 573 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~----~~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1236)
-||+|||+|+|+++||.+||.+|+| .++++.|.|....+...+.... -...+.++||||||.++..+..
T Consensus 617 wGPFLVVtpaStL~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek----- 689 (1185)
T KOG0388|consen 617 WGPFLVVTPASTLHNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK----- 689 (1185)
T ss_pred CCceEEeehHHHHhHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH-----
Confidence 3899999999999999999999998 9999999998776532221111 2345678999999999998753
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCC
Q 000892 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1236)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p 653 (1236)
.|.++.|.++||||||.||+..|.+++.+..++|++|++||||||||+..|||+||+|+.|
T Consensus 690 -------------------y~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMP 750 (1185)
T KOG0388|consen 690 -------------------YLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMP 750 (1185)
T ss_pred -------------------HHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhh
Confidence 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcCCCcC-------CccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000892 654 SPFSISRWWIEVIRDPYEN-------GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1236)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~-------g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1236)
..|.+...|.++|...|+. -+...+.+||.+|+||||||.|++|..+ |-.|+++.++|.||-.|+.+|+.+
T Consensus 751 sLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE--Lg~Kteidv~CdLs~RQ~~lYq~i 828 (1185)
T KOG0388|consen 751 SLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE--LGQKTEIDVYCDLSYRQKVLYQEI 828 (1185)
T ss_pred HhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH--hccceEEEEEechhHHHHHHHHHH
Confidence 9999999999999887765 2457789999999999999999999877 999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCc-------------cc
Q 000892 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS-------------GL 793 (1236)
Q Consensus 727 ~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~-------------~~ 793 (1236)
...+. ...+...+|+||++||||.|+.. ++
T Consensus 829 k~~iS-------------------------------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl 871 (1185)
T KOG0388|consen 829 KRSIS-------------------------------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNL 871 (1185)
T ss_pred HHHhh-------------------------------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCH
Confidence 65432 12344588999999999987321 00
Q ss_pred cc------------------------------------------cc----------------CCCC--------------
Q 000892 794 RS------------------------------------------LQ----------------QSPL-------------- 801 (1236)
Q Consensus 794 ~~------------------------------------------l~----------------~~~~-------------- 801 (1236)
.. +. .++.
T Consensus 872 ~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr 951 (1185)
T KOG0388|consen 872 GDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTR 951 (1185)
T ss_pred HHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHH
Confidence 00 00 0000
Q ss_pred -------------------------------------------------------------------CHH---------H
Q 000892 802 -------------------------------------------------------------------SMD---------E 805 (1236)
Q Consensus 802 -------------------------------------------------------------------t~e---------e 805 (1236)
.|. .
T Consensus 952 ~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~ 1031 (1185)
T KOG0388|consen 952 NLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLV 1031 (1185)
T ss_pred HhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhcccccee
Confidence 000 0
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHHH-----HHHHHHHhhccC-CCCcce------eE
Q 000892 806 ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM-----AVVEEHSEDFRL-DPLLNI------HL 873 (1236)
Q Consensus 806 lL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~l-----~~~~~~~~~fr~-D~~~~l------h~ 873 (1236)
+|+.|+.+++.+| |+||+|.|++.|+++|++++......|-+.. ..+.+.+.+++. |.|.++ ..
T Consensus 1032 ~LDeLL~kLkaeg----HRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEG----HRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred eHHHHHHHhhcCC----ceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 5688888898888 9999999999999999999988877775543 366778888776 333333 44
Q ss_pred EecCC----------cCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhc
Q 000892 874 HHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1236)
Q Consensus 874 ~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~~ 923 (1236)
+.||+ ||||..|.||| ||||.||+++|+||||||+|||||++++.++||.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~ 1168 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKD 1168 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHH
Confidence 55555 89999999999 9999999999999999999999999999999864
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-64 Score=607.33 Aligned_cols=364 Identities=22% Similarity=0.280 Sum_probs=296.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.||+|||||.|++.||..||.+|.| ++..++|.|....|.... ......+|+|++|||+.+.++-
T Consensus 444 ~GP~LvivPlstL~NW~~Ef~kWaP--Sv~~i~YkGtp~~R~~l~---~qir~gKFnVLlTtyEyiikdk---------- 508 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVNWSSEFPKWAP--SVQKIQYKGTPQQRSGLT---KQQRHGKFNVLLTTYEYIIKDK---------- 508 (1157)
T ss_pred CCCeEEeccccccCCchhhcccccc--ceeeeeeeCCHHHHhhHH---HHHhcccceeeeeeHHHhcCCH----------
Confidence 4899999999999999999999998 999999999977653211 2222389999999999998752
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHH-HhccCeEEEEeccCCCCChhhhhhhhhccCCCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~-~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f 656 (1236)
..|.+|.|.++|+||+|++||..++.+..+. ...+.+|++|||||+||++.|||+||+||-|..|
T Consensus 509 --------------~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IF 574 (1157)
T KOG0386|consen 509 --------------ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIF 574 (1157)
T ss_pred --------------HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchh
Confidence 4699999999999999999999999999998 6789999999999999999999999999999999
Q ss_pred CChhHHHHHhcCCCcCCcc----------chHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000892 657 SISRWWIEVIRDPYENGDV----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1236)
Q Consensus 657 ~~~~~F~~~~~~pi~~g~~----------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1236)
.+...|..+|..||..-+. -.+.+||.+|+||++||.|++|..+ ||.|++.++.|.||+.|+.+|..+
T Consensus 575 nS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~--LPdKve~viKC~mSalQq~lY~~m 652 (1157)
T KOG0386|consen 575 NSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE--LPDKVEDVIKCDMSALQQSLYKQM 652 (1157)
T ss_pred hhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh--CchhhhHhhheehhhhhHhhhHHH
Confidence 9999999999999977331 2467999999999999999999666 999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCccccccc--CC-----
Q 000892 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ--QS----- 799 (1236)
Q Consensus 727 ~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~--~~----- 799 (1236)
.+.-. .. .+..-....+..+++.+|.||++||||+|+...-.... ..
T Consensus 653 ~~~g~----------------------l~----~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~ 706 (1157)
T KOG0386|consen 653 QNKGQ----------------------LL----KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLV 706 (1157)
T ss_pred HhCCC----------------------CC----cCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHH
Confidence 53210 00 00001122346789999999999999999732211111 11
Q ss_pred -CCCHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHHHH-----HHHHHHhhccC-CCCcce-
Q 000892 800 -PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRL-DPLLNI- 871 (1236)
Q Consensus 800 -~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~l~-----~~~~~~~~fr~-D~~~~l- 871 (1236)
.....|+|+.++++++.-+ |+||.|+|++.+++|++++|...-..|....+ .+.+..+.|+. |+-.++
T Consensus 707 R~sGKfELLDRiLPKLkatg----HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATG----HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcC----cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 1134578888998888777 99999999999999999999999888887654 55556666764 222222
Q ss_pred -------eEEecCC----------cCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhh
Q 000892 872 -------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQ 922 (1236)
Q Consensus 872 -------h~~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~ 922 (1236)
..+.||- ||||..|.||+ |||||||+|+|.|+||+|.+++||+|+..++.|
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~K 851 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYK 851 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHh
Confidence 2333333 89999999999 999999999999999999999999999886654
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-58 Score=561.12 Aligned_cols=384 Identities=17% Similarity=0.176 Sum_probs=292.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch----hhhccCccEEEEeHHHHhhhcccCCCC
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD----ISELVGADIVLTTYDVLKEDLSHDSDR 573 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~----~~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1236)
....|||||++|+.||.+||.+|..+..+..+.+.|..+.. ...... ....-.+-|.|.||++++....
T Consensus 298 ~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~--w~~~~sil~~~~~~~~~~vli~sye~~~~~~~----- 370 (776)
T KOG0390|consen 298 INKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSS--WIKLKSILFLGYKQFTTPVLIISYETASDYCR----- 370 (776)
T ss_pred ccccEEEccHHHHHHHHHHHHHhccccccceeeeecccchh--hhhhHHHHHhhhhheeEEEEeccHHHHHHHHH-----
Confidence 46789999999999999999999986688888888876640 000000 1112345699999999997653
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCC
Q 000892 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1236)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p 653 (1236)
.+....+++||+||||++||..|.+.+++.+|++++|++|||||+||++.|+|++|+|++|
T Consensus 371 -------------------~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP 431 (776)
T KOG0390|consen 371 -------------------KILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRP 431 (776)
T ss_pred -------------------HHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcCh
Confidence 3778889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcCCCcCCcc-----------chHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHH
Q 000892 654 SPFSISRWWIEVIRDPYENGDV-----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHF 722 (1236)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~g~~-----------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~l 722 (1236)
+.++....|++.+..|+..++. +.+..|+.++..|++||+-....+. ||++.++|+.|.+|+.|+.+
T Consensus 432 ~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~--LP~k~e~vv~~n~t~~Q~~~ 509 (776)
T KOG0390|consen 432 GFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY--LPGKYEYVVFCNPTPIQKEL 509 (776)
T ss_pred hhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh--CCCceeEEEEeCCcHHHHHH
Confidence 9999999999999999887432 3367899999999999999777666 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCC------ccccc-
Q 000892 723 YQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS------SGLRS- 795 (1236)
Q Consensus 723 Y~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~------~~~~~- 795 (1236)
|..+....+ .. .+ ....|..++.|+++|+||.|.. +....
T Consensus 510 ~~~l~~~~~-------~~--------~~------------------~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~ 556 (776)
T KOG0390|consen 510 YKKLLDSMK-------MR--------TL------------------KGYALELITKLKKLCNHPSLLLLCEKTEKEKAFK 556 (776)
T ss_pred HHHHHHHHH-------hh--------hh------------------hcchhhHHHHHHHHhcCHHhhccccccccccccc
Confidence 998865320 00 00 1125788999999999999974 10000
Q ss_pred -----ccCC-------CCCHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHH-----HHHHHHHH
Q 000892 796 -----LQQS-------PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK-----EAMAVVEE 858 (1236)
Q Consensus 796 -----l~~~-------~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~-----~~l~~~~~ 858 (1236)
+... .....-.+..|+.-+..-.++.+.++++-+|++..|+++++.+.....-+- .....|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~ 636 (776)
T KOG0390|consen 557 NPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQK 636 (776)
T ss_pred ChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHH
Confidence 0000 001111223333333233444567888888999999999987766532221 22458888
Q ss_pred HHhhccCCCCc-ce--------eEEecCC----------cCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccchhH
Q 000892 859 HSEDFRLDPLL-NI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENA 918 (1236)
Q Consensus 859 ~~~~fr~D~~~-~l--------h~~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~ 918 (1236)
.++.|+-.+.+ ++ ..+.||. ||||++|.||+ ||||+||+|+|.||||++.|||||+|+
T Consensus 637 ~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~-- 714 (776)
T KOG0390|consen 637 LVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIY-- 714 (776)
T ss_pred HHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHH--
Confidence 89999876554 22 4556665 89999999999 999999999999999999999999999
Q ss_pred hhhhccccccCCCcccCCCCCCCCcccc
Q 000892 919 RKCQRVSREENSDFTDAEDPSGHLSDLS 946 (1236)
Q Consensus 919 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1236)
|++..++++|...+|++......++.
T Consensus 715 --qrq~~K~~lS~~v~~~~~~~~~~~~~ 740 (776)
T KOG0390|consen 715 --QRQTHKEGLSSMVFDEEEDVEKHFFT 740 (776)
T ss_pred --HHHHHhhhhhheEEecccccccccch
Confidence 55566778888877766655544444
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.3e-53 Score=543.79 Aligned_cols=374 Identities=25% Similarity=0.332 Sum_probs=290.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCe-EEEEcCCCcc-cccccccchhhhcc------CccEEEEeHHHHhh---h
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLK-TCIYEGARNS-SLSDTSIMDISELV------GADIVLTTYDVLKE---D 566 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~-V~vy~G~~~~-~~~~~~~~~~~~l~------~~DVVITTYe~L~~---d 566 (1236)
.+|+|||||.+++.||.+|+.+|.+ .++ +.+|+|.... .. ......... .+++++|||+.+++ +
T Consensus 390 ~~~~liv~p~s~~~nw~~e~~k~~~--~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~ 464 (866)
T COG0553 390 LGPALIVVPASLLSNWKREFEKFAP--DLRLVLVYHGEKSELDK---KREALRDLLKLHLVIIFDVVITTYELLRRFLVD 464 (866)
T ss_pred CCCeEEEecHHHHHHHHHHHhhhCc--cccceeeeeCCcccccH---HHHHHHHHhhhcccceeeEEechHHHHHHhhhh
Confidence 4799999999999999999999998 788 9999998752 00 001222222 28999999999998 4
Q ss_pred cccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhh
Q 000892 567 LSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 646 (1236)
Q Consensus 567 ~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~s 646 (1236)
. ..+..+.|+++|+||||+|||..|..++++..+++.+||+|||||+||++.|||+
T Consensus 465 ~------------------------~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~s 520 (866)
T COG0553 465 H------------------------GGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWS 520 (866)
T ss_pred H------------------------HHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHH
Confidence 3 3588999999999999999999999999999999999999999999999999999
Q ss_pred hhh-ccCCCCCC-ChhHHHHHhcCCCcCCcc--------chHHHHHHHHHhhhhhccccc--ccccCCCCCCeEEEEEec
Q 000892 647 LLR-FLKSSPFS-ISRWWIEVIRDPYENGDV--------GAMEFTHKFFKEIMCRSSKVH--VSDELQLPPQEECVSWLT 714 (1236)
Q Consensus 647 LL~-FL~p~~f~-~~~~F~~~~~~pi~~g~~--------~~~~~L~~lL~~~mLRRtK~d--V~~eL~LPpk~e~vv~v~ 714 (1236)
+++ |+.|+.++ +...|...|..|+..... ..+..|+.+++||++||+|.+ +..+ ||++.+.++.|.
T Consensus 521 l~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~--Lp~k~e~~~~~~ 598 (866)
T COG0553 521 LLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE--LPPKIEKVLECE 598 (866)
T ss_pred HHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh--CChhhhhhhhhc
Confidence 999 99999999 558999999988876443 344558899999999999999 6555 999999999999
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCc
Q 000892 715 FSPIEEHFYQSQHE---TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS 791 (1236)
Q Consensus 715 LS~~Qr~lY~~l~e---~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~ 791 (1236)
+++.|+.+|..... .....+...... . ... ..... ....+++.+++|||+|+||.++..
T Consensus 599 l~~~q~~~y~~~~~~~~~~~~~~~~~~~~-------~-------~~~--~~~~~--~~~~~l~~~~~lr~~~~~p~l~~~ 660 (866)
T COG0553 599 LSEEQRELYEALLEGAEKNQQLLEDLEKA-------D-------SDE--NRIGD--SELNILALLTRLRQICNHPALVDE 660 (866)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-------ccc--ccccc--hhhHHHHHHHHHHHhccCcccccc
Confidence 99999999999877 322222211110 0 000 00000 256899999999999999999776
Q ss_pred ccccccC---------------------CCCCHHHHHHHHH-HHHHHhhhhhcc--chhhhhhhHhhHHHHHHhHhHHHH
Q 000892 792 GLRSLQQ---------------------SPLSMDEILMVLI-GKTKIEGEEALR--KLVMALNGLAGIALIEKNLSQAVS 847 (1236)
Q Consensus 792 ~~~~l~~---------------------~~~t~eelL~~Ll-~~~~~e~eea~r--kvLifsq~la~L~iIe~~l~~a~~ 847 (1236)
....... ..+..-..+..++ .....++ + ++++|+||+.++++|+..+.....
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~----~~~kvlifsq~t~~l~il~~~l~~~~~ 736 (866)
T COG0553 661 GLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEG----HYHKVLIFSQFTPVLDLLEDYLKALGI 736 (866)
T ss_pred ccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhc----ccccEEEEeCcHHHHHHHHHHHHhcCC
Confidence 5111100 0002235556666 5666565 6 999999999999999998877753
Q ss_pred HH---HHH--HHHHHHHHhhccCCCC--------cceeEEecCC----------cCCcchhhhhh-hhhccCCCCceEEE
Q 000892 848 LY---KEA--MAVVEEHSEDFRLDPL--------LNIHLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSE 903 (1236)
Q Consensus 848 ~y---~~~--l~~~~~~~~~fr~D~~--------~~lh~~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V~Vy 903 (1236)
.| .+. ...+.+.++.|+.++- ...+.+.||. +|||+++.||+ |||||||+++|.||
T Consensus 737 ~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 737 KYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 22 222 3567788888887632 1224445554 79999999999 99999999999999
Q ss_pred EcccCCcccccchhHhhhhcc
Q 000892 904 KAFKIHSIETCDENARKCQRV 924 (1236)
Q Consensus 904 Rlit~~Tiee~i~~~~k~~~~ 924 (1236)
|++++|||||+|.+.+..|+.
T Consensus 817 r~i~~~tiEe~i~~~~~~K~~ 837 (866)
T COG0553 817 RLITRGTIEEKILELQEKKQE 837 (866)
T ss_pred EeecCCcHHHHHHHHHHHHHH
Confidence 999999999999999999843
No 15
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.4e-51 Score=504.62 Aligned_cols=370 Identities=31% Similarity=0.434 Sum_probs=295.5
Q ss_pred CCCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 497 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 497 ~~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
..+.+|||||.+++.||..|+.+...++.+.+++|+| +.. ....+..||||||||.++..
T Consensus 188 ~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g-r~k--------d~~el~~~dVVltTy~il~~----------- 247 (674)
T KOG1001|consen 188 EFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG-RTK--------DKSELNSYDVVLTTYDILKN----------- 247 (674)
T ss_pred ccCceeEecchHHHHHHHHHHhccCCccceEEEEecc-ccc--------ccchhcCCceEEeeHHHhhc-----------
Confidence 3578999999999999999998888888999999999 211 67788999999999999985
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCC
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f 656 (1236)
++|..+.|.|||+||||.++|.++++++++..|.+.+||+|||||+||+++|||+++.|+..+||
T Consensus 248 ---------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~ 312 (674)
T KOG1001|consen 248 ---------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPY 312 (674)
T ss_pred ---------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCc
Confidence 25888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhcCCCcCCc-cchHHHHHHHHHhhhhhccccccc---ccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 000892 657 SISRWWIEVIRDPYENGD-VGAMEFTHKFFKEIMCRSSKVHVS---DELQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 732 (1236)
Q Consensus 657 ~~~~~F~~~~~~pi~~g~-~~~~~~L~~lL~~~mLRRtK~dV~---~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~ 732 (1236)
....+|...+..|+..+. .+....++.+++.+|+||+|..-. ..+.|||++..++++.++..++.+|..+...+..
T Consensus 313 ~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~ 392 (674)
T KOG1001|consen 313 CDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRN 392 (674)
T ss_pred hhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhh
Confidence 999999999999999887 678889999999999999998432 2357999999999999999999999999877655
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccC--------------
Q 000892 733 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ-------------- 798 (1236)
Q Consensus 733 ~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~-------------- 798 (1236)
.....+.. | ....++..++..+++|||+||||.++.........
T Consensus 393 ~~~~~~~~-----------~-----------~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~ 450 (674)
T KOG1001|consen 393 QFSNYANE-----------G-----------TVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVD 450 (674)
T ss_pred HHHHHhhh-----------c-----------hhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHH
Confidence 44433222 0 01234788999999999999999984422111000
Q ss_pred --------------C----CCCHHHHH------------------------HHHHH-----------------------H
Q 000892 799 --------------S----PLSMDEIL------------------------MVLIG-----------------------K 813 (1236)
Q Consensus 799 --------------~----~~t~eelL------------------------~~Ll~-----------------------~ 813 (1236)
. ...|.... ..++. .
T Consensus 451 l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~ 530 (674)
T KOG1001|consen 451 LSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKI 530 (674)
T ss_pred HhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHH
Confidence 0 00000000 01111 0
Q ss_pred H-HHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHH-----HHHHHHHHHHhhccCCCCcce--------eEEecCC-
Q 000892 814 T-KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK-----EAMAVVEEHSEDFRLDPLLNI--------HLHHNLT- 878 (1236)
Q Consensus 814 ~-~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~-----~~l~~~~~~~~~fr~D~~~~l--------h~~~Nl~- 878 (1236)
+ ..+..+. .++++|||++.++++++-.+......|. .++..+......|..|+.+.+ .+++||.
T Consensus 531 l~~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~ 609 (674)
T KOG1001|consen 531 LQAKEMSEQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTA 609 (674)
T ss_pred HhhccCCCC-CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhh
Confidence 0 1122233 4999999999999999987765544433 334566666777888887544 3444444
Q ss_pred ---------cCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhcc
Q 000892 879 ---------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1236)
Q Consensus 879 ---------dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~~~ 924 (1236)
+|||+.+.||+ |||||||+|+|+|+|++.++||||+++.+|++|+-
T Consensus 610 a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~ 665 (674)
T KOG1001|consen 610 ASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKRE 665 (674)
T ss_pred hhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHH
Confidence 89999999999 99999999999999999999999999999999763
No 16
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.6e-51 Score=486.65 Aligned_cols=445 Identities=16% Similarity=0.195 Sum_probs=307.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHhcCCC----CCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCC
Q 000892 497 ATGATLIVCPAPILAQWDAEITRHTRP----GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 572 (1236)
Q Consensus 497 ~~~~tLIV~P~SLl~QW~~Ei~k~~~~----g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~ 572 (1236)
.++++|||||.+++.||.+||.+|.+. ..|.|+-+...++. ..+......+..+..|.|+.|++++.-.....
T Consensus 727 g~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~--e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~- 803 (1567)
T KOG1015|consen 727 GFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRP--EERSYMLQRWQEDGGVMIIGYDMYRNLAQGRN- 803 (1567)
T ss_pred CCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccCh--HHHHHHHHHHHhcCCEEEEehHHHHHHhcccc-
Confidence 357899999999999999999999972 13455544444331 11222334555667899999999998543211
Q ss_pred CcccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccC
Q 000892 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1236)
Q Consensus 573 ~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~ 652 (1236)
.+.+. .+. .....|..-..++||+||||.|||..|.+++++.++.+.+||+|||||+||||.|.|.+++|+.
T Consensus 804 --vk~rk-~ke-----~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVK 875 (1567)
T KOG1015|consen 804 --VKSRK-LKE-----IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVK 875 (1567)
T ss_pred --hhhhH-HHH-----HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcc
Confidence 11111 110 1113477778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHhcCCCcCCcc------------chHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHH
Q 000892 653 SSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 720 (1236)
Q Consensus 653 p~~f~~~~~F~~~~~~pi~~g~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr 720 (1236)
|+.+|+...|+..|.+||++|.. ....-|+.+|..++-|+--..+... ||||+++|+.|.||+.|.
T Consensus 876 e~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--LPPK~eyVi~vrltelQ~ 953 (1567)
T KOG1015|consen 876 ENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--LPPKHEYVIAVRLTELQC 953 (1567)
T ss_pred cccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--CCCceeEEEEEeccHHHH
Confidence 99999999999999999999753 2345688899999999888877666 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCC----------
Q 000892 721 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS---------- 790 (1236)
Q Consensus 721 ~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~---------- 790 (1236)
.+|+.+++.-. . ++.+...+ +.-...+|+....|++|-+||....
T Consensus 954 ~LYq~yL~h~~-----------------~----~G~d~eg~----~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR 1008 (1567)
T KOG1015|consen 954 KLYQYYLDHLT-----------------G----VGNDSEGG----RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKR 1008 (1567)
T ss_pred HHHHHHHhhcc-----------------c----cCCccccc----cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcc
Confidence 99998765200 0 01111111 1124678999999999999997411
Q ss_pred ---c----ccc-------------------------c-----c----------------------cCC--------CCC-
Q 000892 791 ---S----GLR-------------------------S-----L----------------------QQS--------PLS- 802 (1236)
Q Consensus 791 ---~----~~~-------------------------~-----l----------------------~~~--------~~t- 802 (1236)
. .+. + . +.+ +-+
T Consensus 1009 ~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~ 1088 (1567)
T KOG1015|consen 1009 YFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVS 1088 (1567)
T ss_pred cccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchH
Confidence 0 000 0 0 000 000
Q ss_pred --HH-------------------HHH-------------HHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHH
Q 000892 803 --MD-------------------EIL-------------MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL 848 (1236)
Q Consensus 803 --~e-------------------elL-------------~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~ 848 (1236)
+. +++ ..||-.+...|++-+.++|||||.+..|++|+..|..+...
T Consensus 1089 l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~ 1168 (1567)
T KOG1015|consen 1089 LKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSRE 1168 (1567)
T ss_pred HHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhccc
Confidence 00 000 12333455568888899999999999999999987654322
Q ss_pred ----------------------HHH-----HHHHHHHHHhhccCCCCc--ce-------------------eEEecCCcC
Q 000892 849 ----------------------YKE-----AMAVVEEHSEDFRLDPLL--NI-------------------HLHHNLTEI 880 (1236)
Q Consensus 849 ----------------------y~~-----~l~~~~~~~~~fr~D~~~--~l-------------------h~~~Nl~dw 880 (1236)
|-. .-..++..++.|+-.... ++ +|+++- .|
T Consensus 1169 gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa-sW 1247 (1567)
T KOG1015|consen 1169 GKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA-SW 1247 (1567)
T ss_pred CccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec-cc
Confidence 111 123566666666533221 11 333333 59
Q ss_pred Ccchhhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhccccccCCCcccCCCCCCCCccccccCCCCCCCC---
Q 000892 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKS--- 956 (1236)
Q Consensus 881 np~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 956 (1236)
||.-|.|++ ||||-||+|||.|||||+.||+||+|| .++|-+++++--++|+-.-..|..- |++.-....
T Consensus 1248 NPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIY----kRQVTKqsls~RVVDeqQv~Rhy~~--neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1248 NPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIY----KRQVTKQSLSFRVVDEQQVERHYTM--NELTELYTFEPD 1321 (1567)
T ss_pred CCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHH----HHHHhHhhhhhhhhhHHHHHHHhhH--hhhHHHhhcCCc
Confidence 999999999 999999999999999999999999999 6678888888666665443322221 112111110
Q ss_pred --C--CCCCCCCCCchhHHHHHHHHHHHHHhhhh
Q 000892 957 --D--CCVSSSSFDDASLITVCENLKQKYLSGFS 986 (1236)
Q Consensus 957 --~--~~~~~~~l~~~~l~~~~~~l~~~yl~~~~ 986 (1236)
| ..-..+-|.-|.|..+.-++.++-+-.+.
T Consensus 1322 ~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ 1355 (1567)
T KOG1015|consen 1322 LDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYH 1355 (1567)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHhhhhh
Confidence 0 00134466667777777777777665543
No 17
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=6.8e-46 Score=419.92 Aligned_cols=241 Identities=32% Similarity=0.521 Sum_probs=189.5
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
+++|||||++++.||..||.+|++++.+++++|.|..... .........++++||||+++.....
T Consensus 59 ~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~vvi~ty~~~~~~~~---------- 123 (299)
T PF00176_consen 59 KKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERR-----RLSKNQLPKYDVVITTYETLRKARK---------- 123 (299)
T ss_dssp S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHH-----HTTSSSCCCSSEEEEEHHHHH--TS----------
T ss_pred cceeEeeccchhhhhhhhhccccccccccccccccccccc-----cccccccccceeeeccccccccccc----------
Confidence 4699999999999999999999976689999999987111 1134556789999999999992110
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCCC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~~ 658 (1236)
+.....+..++|++||+||||.+||..|+.++++..|.+.++|+|||||++|++.|||+++.||.|+.+++
T Consensus 124 ---------~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~ 194 (299)
T PF00176_consen 124 ---------KKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSD 194 (299)
T ss_dssp ---------THTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSS
T ss_pred ---------cccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeecccccc
Confidence 00113577788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCCcCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 000892 659 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 738 (1236)
Q Consensus 659 ~~~F~~~~~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~ 738 (1236)
...|.+.+..+..........+|+.+++++++||+++++ ...||++.+.++.++||+.|+.+|+.+.........
T Consensus 195 ~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~--~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~--- 269 (299)
T PF00176_consen 195 RRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDV--EKELPPKIEHVINVELSPEQRELYNELLKEARENLK--- 269 (299)
T ss_dssp HHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGG--CTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCT---
T ss_pred chhhhhhhhhhccccccccccccccccchhhhhhhcccc--cccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---
Confidence 999999886553344557788999999999999999999 445999999999999999999999987654221100
Q ss_pred HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCC
Q 000892 739 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVG 789 (1236)
Q Consensus 739 ~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~ 789 (1236)
. . ..........++..+++|||+||||.|+
T Consensus 270 ---------~----------~--~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 270 ---------Q----------S--SRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp ---------T-------------T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ---------h----------h--cccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 0 0 0112345788999999999999999874
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=413.27 Aligned_cols=406 Identities=18% Similarity=0.223 Sum_probs=277.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCC---------CCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcc
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRP---------GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLS 568 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~---------g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~ 568 (1236)
++++|+|+|-.++.||..||..|.|+ ..+.|+++....+. +..+......+.....|+++.|++++--.-
T Consensus 312 AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT-~~~Rakvi~~Wv~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 312 AKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKT-FDQRAKVIEQWVQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred cceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhh-HHHHHHHHHHHhccCCEEEehHHHHHHHHH
Confidence 47899999999999999999999984 35667776654433 222333445666788899999999986432
Q ss_pred cCCCCcccch----h----------hhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEec
Q 000892 569 HDSDRHEGDR----R----------FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITG 634 (1236)
Q Consensus 569 ~~~~~~~~~~----~----------~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTG 634 (1236)
.......... + .-+.+.-|..+.+.|.+-..|+||+||+|+|||..+.++.+++.|++++|++|||
T Consensus 391 k~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTG 470 (1387)
T KOG1016|consen 391 KTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTG 470 (1387)
T ss_pred hcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEec
Confidence 2100000000 0 0011112334456788899999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhhhhhccCCCCCCChhHHHHHhcCCCcCCcc------------chHHHHHHHHHhhhhhcccccccccCC
Q 000892 635 TPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1236)
Q Consensus 635 TPiqN~L~DL~sLL~FL~p~~f~~~~~F~~~~~~pi~~g~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~ 702 (1236)
-|+||+|-|.|.+++|++|.++|+...|...|.+||.+|.- .....|+.++..|+-||+..-+.. -
T Consensus 471 YPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~--~ 548 (1387)
T KOG1016|consen 471 YPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK--I 548 (1387)
T ss_pred cccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh--h
Confidence 99999999999999999999999999999999999998742 234578999999999999987744 4
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 000892 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1236)
Q Consensus 703 LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQi 782 (1236)
||.+.|+|+.|.+|..||++|+.+.-..+.. +... .+...+ .|..+.-.-+|
T Consensus 549 LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~-----------~~~~-------~~~~~N----------PLkAF~vCcKI 600 (1387)
T KOG1016|consen 549 LPEKKEYVILVRKSQIQRQLYRNFMLDAKRE-----------IAAN-------NDAVFN----------PLKAFSVCCKI 600 (1387)
T ss_pred cccccceEEEEeHHHHHHHHHHHHHHHHHHh-----------hccc-------cccccC----------hHHHHHHHHHh
Confidence 9999999999999999999999876322211 1001 011111 12222223344
Q ss_pred ccCCCCCCc---------------------cccc-----------------------cc--CC----------------C
Q 000892 783 CCHPQVGSS---------------------GLRS-----------------------LQ--QS----------------P 800 (1236)
Q Consensus 783 C~HP~L~~~---------------------~~~~-----------------------l~--~~----------------~ 800 (1236)
-|||.+... +... .. +. .
T Consensus 601 WNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~ 680 (1387)
T KOG1016|consen 601 WNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEV 680 (1387)
T ss_pred cCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccc
Confidence 466654110 0000 00 00 0
Q ss_pred CCHHHHHHHHHHHHH-----------------HhhhhhccchhhhhhhHhhHHHHHHhHhHH------------------
Q 000892 801 LSMDEILMVLIGKTK-----------------IEGEEALRKLVMALNGLAGIALIEKNLSQA------------------ 845 (1236)
Q Consensus 801 ~t~eelL~~Ll~~~~-----------------~e~eea~rkvLifsq~la~L~iIe~~l~~a------------------ 845 (1236)
.+..+.-.+|..+-. .+.-..+.++|+|||-+..|++|+.-+.+.
T Consensus 681 ~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~ 760 (1387)
T KOG1016|consen 681 EKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEK 760 (1387)
T ss_pred cchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhh
Confidence 011112222322221 112234568999999999999998754322
Q ss_pred HHHHHHHH-----HHHHHHHhhccCCCCcc-e--------eEEecCC----------cCCcchhhhhh-hhhccCCCCce
Q 000892 846 VSLYKEAM-----AVVEEHSEDFRLDPLLN-I--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPG 900 (1236)
Q Consensus 846 ~~~y~~~l-----~~~~~~~~~fr~D~~~~-l--------h~~~Nl~----------dwnp~~d~QA~-R~hRiGQ~k~V 900 (1236)
...|-... ..++..+++|+-.+-.. + ..+.||. -|||--|.||. |++|-||+|+.
T Consensus 761 n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpc 840 (1387)
T KOG1016|consen 761 NRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPC 840 (1387)
T ss_pred ccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCce
Confidence 11121111 14556666665544221 1 2234443 59999999999 99999999999
Q ss_pred EEEEcccCCcccccchhHhhhhccccccCCCcccCCCC
Q 000892 901 CSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDP 938 (1236)
Q Consensus 901 ~VyRlit~~Tiee~i~~~~k~~~~~~~~~~~~~~~~~~ 938 (1236)
+|||||.-.|.|-+|+ -++||++|.|+-++|+--
T Consensus 841 fvYRlVmD~~lEkkIy----dRQIsKqGmsdRvVDd~n 874 (1387)
T KOG1016|consen 841 FVYRLVMDNSLEKKIY----DRQISKQGMSDRVVDDAN 874 (1387)
T ss_pred eEEeehhhhhhHHHHH----HHHHhhccchhhhhcccC
Confidence 9999999999999999 577999999977765433
No 19
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.7e-38 Score=402.23 Aligned_cols=342 Identities=14% Similarity=0.155 Sum_probs=227.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.+++|||||++|+.||..|+.+++ .+.+.+|.+..-.... ......+..++++|+||++++++...
T Consensus 199 ~~rvLIVvP~sL~~QW~~El~~kF---~l~~~i~~~~~~~~~~---~~~~~pf~~~~~vI~S~~~l~~~~~~-------- 264 (956)
T PRK04914 199 AERVLILVPETLQHQWLVEMLRRF---NLRFSLFDEERYAEAQ---HDADNPFETEQLVICSLDFLRRNKQR-------- 264 (956)
T ss_pred CCcEEEEcCHHHHHHHHHHHHHHh---CCCeEEEcCcchhhhc---ccccCccccCcEEEEEHHHhhhCHHH--------
Confidence 368999999999999999998887 4778888765422110 00113345689999999999974210
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCc---hHHHHHHHHHh--ccCeEEEEeccCCCCChhhhhhhhhccC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN---AAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~---~Sk~~kal~~L--~a~~RwlLTGTPiqN~L~DL~sLL~FL~ 652 (1236)
...+....|++||+||||+++|. .|+.++.+..| ++.++++|||||+||++.|+|++|+||+
T Consensus 265 -------------~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLd 331 (956)
T PRK04914 265 -------------LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLD 331 (956)
T ss_pred -------------HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhC
Confidence 01366779999999999999953 46778888888 5789999999999999999999999999
Q ss_pred CCCCCChhHHHHHhcC--CC-------cCCc---cchHHHHH---------------------------HHH--------
Q 000892 653 SSPFSISRWWIEVIRD--PY-------ENGD---VGAMEFTH---------------------------KFF-------- 685 (1236)
Q Consensus 653 p~~f~~~~~F~~~~~~--pi-------~~g~---~~~~~~L~---------------------------~lL-------- 685 (1236)
|+.|+++..|.+.... |+ ..+. ......|. +++
T Consensus 332 P~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg 411 (956)
T PRK04914 332 PDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHG 411 (956)
T ss_pred CCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcC
Confidence 9999999999754321 11 1111 11111111 111
Q ss_pred -HhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCccc
Q 000892 686 -KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 764 (1236)
Q Consensus 686 -~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l 764 (1236)
.++|+|+++++|. .+|++..+.+.+++.+..+..+... .. ...... +
T Consensus 412 ~~rvm~RntR~~v~---~fp~R~~~~~~l~~~~~y~~~~~~~---~~-------~~~~~~-------------------l 459 (956)
T PRK04914 412 TGRVLFRNTRAAVK---GFPKRELHPIPLPLPEQYQTAIKVS---LE-------ARARDM-------------------L 459 (956)
T ss_pred cceEEEeccHHhhc---CCCcCceeEeecCCCHHHHHHHHHh---HH-------HHHHhh-------------------c
Confidence 2689999999985 4899999999999976543333210 00 000000 0
Q ss_pred chhhHHHHHHHHHHHHHHccCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhH
Q 000892 765 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ 844 (1236)
Q Consensus 765 ~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~ 844 (1236)
.+ ..++..+ ... ... . .....-+.|..++... ...|+|||++...+.+.|.+.+..
T Consensus 460 ~p---e~~~~~~---~~~--------~~~--~--~~d~Ki~~L~~~L~~~------~~~KvLVF~~~~~t~~~L~~~L~~ 515 (956)
T PRK04914 460 YP---EQIYQEF---EDN--------ATW--W--NFDPRVEWLIDFLKSH------RSEKVLVICAKAATALQLEQALRE 515 (956)
T ss_pred CH---HHHHHHH---hhh--------hhc--c--ccCHHHHHHHHHHHhc------CCCeEEEEeCcHHHHHHHHHHHhh
Confidence 00 0111100 000 000 0 0001123333333322 147999999999999999998843
Q ss_pred H----HHHHHH--HHHHHHHHHhhccCCC--C---------------cce--eEEecCCcCCcchhhhhh-hhhccCCCC
Q 000892 845 A----VSLYKE--AMAVVEEHSEDFRLDP--L---------------LNI--HLHHNLTEILPMVANCAT-ELSQNEQHF 898 (1236)
Q Consensus 845 a----~~~y~~--~l~~~~~~~~~fr~D~--~---------------~~l--h~~~Nl~dwnp~~d~QA~-R~hRiGQ~k 898 (1236)
. ...|.+ ....+++..+.|+.+. . +.. .++|++. |||+...|++ |+|||||++
T Consensus 516 ~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP-~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 516 REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP-FNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC-CCHHHHHHHhcccccCCCCc
Confidence 2 112332 3446677777776532 2 211 4556665 9999999999 999999999
Q ss_pred ceEEEEcccCCcccccchhHhhhhc
Q 000892 899 PGCSEKAFKIHSIETCDENARKCQR 923 (1236)
Q Consensus 899 ~V~VyRlit~~Tiee~i~~~~k~~~ 923 (1236)
+|.||.+++++|++|.|++..+++.
T Consensus 595 ~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 595 DIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred eEEEEEccCCCCHHHHHHHHHhhhc
Confidence 9999999999999999999887744
No 20
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-38 Score=360.60 Aligned_cols=353 Identities=15% Similarity=0.124 Sum_probs=239.3
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.|.|||||+|+...|.+++.+|+|. -..+.+..+.... .+.-....-|+|+||+++....
T Consensus 242 wplliVcPAsvrftWa~al~r~lps-~~pi~vv~~~~D~--------~~~~~t~~~v~ivSye~ls~l~----------- 301 (689)
T KOG1000|consen 242 WPLLIVCPASVRFTWAKALNRFLPS-IHPIFVVDKSSDP--------LPDVCTSNTVAIVSYEQLSLLH----------- 301 (689)
T ss_pred CcEEEEecHHHhHHHHHHHHHhccc-ccceEEEecccCC--------ccccccCCeEEEEEHHHHHHHH-----------
Confidence 5899999999999999999999984 2345555554321 1112233459999999998753
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHh--ccCeEEEEeccCCCCChhhhhhhhhccCCCCC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L--~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f 656 (1236)
..|..-.|..||+||.|++|+..+++.+++..+ .+.|.++|||||-..++.|||.++..+++-.|
T Consensus 302 -------------~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlf 368 (689)
T KOG1000|consen 302 -------------DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLF 368 (689)
T ss_pred -------------HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhccccc
Confidence 246777799999999999999999999999876 58999999999999999999999999999999
Q ss_pred CChhHHHHHhcCCCcC------CccchHHHHHHHHH-hhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 000892 657 SISRWWIEVIRDPYEN------GDVGAMEFTHKFFK-EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHET 729 (1236)
Q Consensus 657 ~~~~~F~~~~~~pi~~------g~~~~~~~L~~lL~-~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~ 729 (1236)
.++..|...|++.-.- ..-.++.+|+.+|. .+|+||+|.+|+.+ ||||...++++ ..+.+-..-+++...
T Consensus 369 p~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q--LPpKrr~Vv~~-~~gr~da~~~~lv~~ 445 (689)
T KOG1000|consen 369 PNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ--LPPKRREVVYV-SGGRIDARMDDLVKA 445 (689)
T ss_pred ccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCccceEEEEE-cCCccchHHHHHHHH
Confidence 9999999988764221 22356777887765 57999999999887 99996655554 444444444443332
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccCCCCCHHHHHHH
Q 000892 730 CVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMV 809 (1236)
Q Consensus 730 ~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~ 809 (1236)
...... .+.. . .+-...++.-++.. .....-+.+-
T Consensus 446 a~~~t~-------~~~~-------------------e---~~~~~l~l~y~~tg----------------iaK~~av~ey 480 (689)
T KOG1000|consen 446 AADYTK-------VNSM-------------------E---RKHESLLLFYSLTG----------------IAKAAAVCEY 480 (689)
T ss_pred hhhcch-------hhhh-------------------h---hhhHHHHHHHHHhc----------------ccccHHHHHH
Confidence 211000 0000 0 00111111111110 0001111111
Q ss_pred HHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHH-----HHHHHHHHhhccCCCCcce--------e----
Q 000892 810 LIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEA-----MAVVEEHSEDFRLDPLLNI--------H---- 872 (1236)
Q Consensus 810 Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~-----l~~~~~~~~~fr~D~~~~l--------h---- 872 (1236)
++.+-. -+++..+|+|||..-..+||-|+.++.....-.-+. -..++..+..|+.+.-..+ .
T Consensus 481 i~~~~~-l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 481 ILENYF-LPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred HHhCcc-cccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 111100 033344799999999999999998877653322111 2356677788888775333 1
Q ss_pred ------EEecCCcCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccch--hHhhhhccccccCCCcc
Q 000892 873 ------LHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDE--NARKCQRVSREENSDFT 933 (1236)
Q Consensus 873 ------~~~Nl~dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~--~~~k~~~~~~~~~~~~~ 933 (1236)
+.|--..|||-.=.||. |+|||||+-.|.||=|+.+||+.|-.- -.+|=+.++..++|..+
T Consensus 560 ~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~~ 629 (689)
T KOG1000|consen 560 LTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSDT 629 (689)
T ss_pred eeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCccc
Confidence 11222269999999999 999999999999999999999999644 34555667777776543
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=390.80 Aligned_cols=314 Identities=20% Similarity=0.334 Sum_probs=248.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc-----------------cchhhhccCccEEEEeH
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS-----------------IMDISELVGADIVLTTY 560 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~-----------------~~~~~~l~~~DVVITTY 560 (1236)
.+|.||++|.+.+.+|..|+..|.+ .+.+..|+|..+.+.-.+. .........+.+.+++|
T Consensus 345 ~~P~Lv~ap~sT~~nwe~e~~~wap--~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~ 422 (696)
T KOG0383|consen 345 PGPPLVVAPLSTIVNWEREFELWAP--SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSY 422 (696)
T ss_pred CCCceeeccCccccCCCCchhccCC--CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCch
Confidence 4799999999999999999999998 8999999998765321100 00112335677888888
Q ss_pred HHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCC
Q 000892 561 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRK 640 (1236)
Q Consensus 561 e~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~ 640 (1236)
++...+. +.+..+.|..+|+||||++||..|+.++.+...+..+++++||||.||+
T Consensus 423 ~~~~~~~------------------------~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 423 ETIEIDQ------------------------SILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred hhcccCH------------------------HHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhh
Confidence 8877653 4689999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCCCChhHHHHHhcCCCcCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHH
Q 000892 641 LDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 720 (1236)
Q Consensus 641 L~DL~sLL~FL~p~~f~~~~~F~~~~~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr 720 (1236)
+.+|+++|+||.|+.|.+..||.+.|.+- ...+.++.|+.++.|.|+||.|.||.+. +|+|++-++.+.|++.|+
T Consensus 479 ~~el~~ll~flt~~~~~~~~~f~e~~~d~---~~~~~~~~l~~l~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~ 553 (696)
T KOG0383|consen 479 LEELFNLLNFLTPGRFNSLEWFLEEFHDI---SCEEQIKKLHLLLCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQK 553 (696)
T ss_pred hHHhhhcccccCcccccchhhhhhhcchh---hHHHHHHhhccccCchhhhhhhhhhccC--CCccceeEEEEecCHHHH
Confidence 99999999999999999999999887643 3456788999999999999999999776 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccCCC
Q 000892 721 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP 800 (1236)
Q Consensus 721 ~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~ 800 (1236)
++|+.++.+-..-.. .......+++.+|.||++||||++... ...+....
T Consensus 554 ~~yk~~~t~n~~~l~-----------------------------~~~~~~s~~n~~mel~K~~~hpy~~~~-~e~~~~~~ 603 (696)
T KOG0383|consen 554 KYYKKILTRNWQGLL-----------------------------AGVHQYSLLNIVMELRKQCNHPYLSPL-EEPLEENG 603 (696)
T ss_pred HHHHHHHcCChHHHh-----------------------------hcchhHHHHHHHHHHHHhhcCcccCcc-ccccccch
Confidence 999987653221110 011235688999999999999999766 22221111
Q ss_pred ----------CCHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHHHH-----HHHHHHhhccC
Q 000892 801 ----------LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRL 865 (1236)
Q Consensus 801 ----------~t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~l~-----~~~~~~~~fr~ 865 (1236)
+.+-.+|..|+.+++.+| |+|++|+|++.||||+++.+..+. .|....+ .+++.++.|+.
T Consensus 604 ~~~~~~l~k~~~k~~~l~~~~~~l~~~g----hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~ 678 (696)
T KOG0383|consen 604 EYLGSALIKASGKLTLLLKMLKKLKSSG----HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNA 678 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCC
Confidence 223345666666666666 999999999999999999998888 7877665 66777777774
Q ss_pred -CCCcceeEEecC
Q 000892 866 -DPLLNIHLHHNL 877 (1236)
Q Consensus 866 -D~~~~lh~~~Nl 877 (1236)
+..+.+.++-|.
T Consensus 679 ~~~~~~cfllstr 691 (696)
T KOG0383|consen 679 PGSNQFCFLLSTR 691 (696)
T ss_pred CCccceEEEeecc
Confidence 444555555543
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.8e-23 Score=258.26 Aligned_cols=301 Identities=15% Similarity=0.178 Sum_probs=176.5
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+++|||||.+. +.||.+||.+|+.-....+..|.|..+.. .....+|+||||+++......... .
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~----------~~~~~~VvVtTYq~l~~~~~r~~~----~ 364 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER----------FHGEAGVVVSTYSMVAHTGKRSYE----S 364 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc----------cccCCcEEEEEHHHhhcccccchh----h
Confidence 57999999875 88999999999743356677888864431 123578999999999864321000 0
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhcc-CCCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL-KSSPF 656 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL-~p~~f 656 (1236)
. .....|....|++||+||+|.+.+ ....+.+..+.+.+||+|||||++++ +.+..+.|+ +|..|
T Consensus 365 ~----------~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vy 430 (732)
T TIGR00603 365 E----------KVMEWLTNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLY 430 (732)
T ss_pred h----------HHHHHhccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeee
Confidence 0 001125556899999999999954 34555677789999999999999875 445545544 33322
Q ss_pred CChhHHHHHhcCCCcCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000892 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1236)
Q Consensus 657 ~~~~~F~~~~~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~ 736 (1236)
. ..|.+... .--|.+-....++|+|++.+..-|.....
T Consensus 431 e--~~~~eLi~--------------------------------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~-------- 468 (732)
T TIGR00603 431 E--ANWMELQK--------------------------------KGFIANVQCAEVWCPMTPEFYREYLRENS-------- 468 (732)
T ss_pred e--cCHHHHHh--------------------------------CCccccceEEEEEecCCHHHHHHHHHhcc--------
Confidence 1 12222211 11155555667999999875444421100
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccCCCCCHHHHHHHHHHHHHH
Q 000892 737 VIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 816 (1236)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~ 816 (1236)
. ....+ +..+|. .-+.+..|+..-
T Consensus 469 -----------------------------~--~k~~l--------~~~np~---------------K~~~~~~Li~~h-- 492 (732)
T TIGR00603 469 -----------------------------R--KRMLL--------YVMNPN---------------KFRACQFLIRFH-- 492 (732)
T ss_pred -----------------------------h--hhhHH--------hhhChH---------------HHHHHHHHHHHH--
Confidence 0 00000 111221 113334444322
Q ss_pred hhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCC-cce---------------eEEecCC--
Q 000892 817 EGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-LNI---------------HLHHNLT-- 878 (1236)
Q Consensus 817 e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~l~~~~~~~~~fr~D~~-~~l---------------h~~~Nl~-- 878 (1236)
+...+++|||++.+..+..+...+.............|....+.|+..+. ..| .+..++.
T Consensus 493 --e~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~ 570 (732)
T TIGR00603 493 --EQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 570 (732)
T ss_pred --hhcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCC
Confidence 12458999999999988888777754332333334577777888875422 222 2222221
Q ss_pred cCCcchhhhhhhhhccCCCC--------ceEEEEcccCCcccccchhHhhhhccccccCC
Q 000892 879 EILPMVANCATELSQNEQHF--------PGCSEKAFKIHSIETCDENARKCQRVSREENS 930 (1236)
Q Consensus 879 dwnp~~d~QA~R~hRiGQ~k--------~V~VyRlit~~Tiee~i~~~~k~~~~~~~~~~ 930 (1236)
.-++....| |++|+++.+ +..+|.|++.+|.|+..- .-.|+-+.++|-+
T Consensus 571 ~gS~~q~iQ--RlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s-~~Rq~fl~~qGY~ 627 (732)
T TIGR00603 571 YGSRRQEAQ--RLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYS-TKRQRFLVDQGYS 627 (732)
T ss_pred CCCHHHHHH--HhcccccCCCCCccccccceEEEEecCCchHHHHH-HHHHHHHHHCCCe
Confidence 113433333 666665544 378899999999998743 3333445566553
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.80 E-value=1.9e-18 Score=221.83 Aligned_cols=369 Identities=11% Similarity=0.034 Sum_probs=194.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+++|||||. .++.||..++.+++..+..++.+++|...... .......++|+++|++.+..++..
T Consensus 59 ~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~------r~~~~~~~~iiv~T~~~l~~~l~~-------- 124 (773)
T PRK13766 59 GKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEK------RAELWEKAKVIVATPQVIENDLIA-------- 124 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHH------HHHHHhCCCEEEECHHHHHHHHHc--------
Confidence 579999998 68899999999987533458888888643210 122345689999999999886531
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHh---ccCeEEEEeccCCCCChhhhhhhhhccCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~ 654 (1236)
..+..-.|+.||+||||++.+..+..+-+-... +..+.++|||||.++ ...+..++.-|...
T Consensus 125 --------------~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~ 189 (773)
T PRK13766 125 --------------GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIE 189 (773)
T ss_pred --------------CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCce
Confidence 113334699999999999987654433322222 345699999999876 55666666555433
Q ss_pred CCCChh----HHHHHhcCCC----cCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000892 655 PFSISR----WWIEVIRDPY----ENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1236)
Q Consensus 655 ~f~~~~----~F~~~~~~pi----~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1236)
.+.... .....+..+- .-.-+..+..++..+..++-++.+...... .+++....+..-.+...++.++..+
T Consensus 190 ~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l 268 (773)
T PRK13766 190 HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG-VIVSISPDVSKKELLGLQKKLQQEI 268 (773)
T ss_pred EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCCcCHHHHHHHHHHHHHHh
Confidence 221111 1111111110 001234566788888888888776543211 1233322222233333343333332
Q ss_pred HHHHHH--HHHHHH---HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCc----------
Q 000892 727 HETCVG--YAREVI---QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS---------- 791 (1236)
Q Consensus 727 ~e~~~~--~a~~~~---~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~---------- 791 (1236)
...-.. .....+ ..+..... .+.......+...+.+|+..+.++.....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~ 332 (773)
T PRK13766 269 ANDDSEGYEAISILAEAMKLRHAVE----------------LLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRF 332 (773)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHH----------------HHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHH
Confidence 110000 000000 00000000 00000111222223333322221110000
Q ss_pred -----ccccccCCCCCHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHH---HHH----------HH
Q 000892 792 -----GLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKE----------AM 853 (1236)
Q Consensus 792 -----~~~~l~~~~~t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~---y~~----------~l 853 (1236)
..... .......+.|..++.....+ ....+++||+++..+.+.|.+.+...... +.+ ..
T Consensus 333 ~~~~~~~~~~-~~~~pK~~~L~~il~~~~~~--~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 333 RKAVRKAKEL-DIEHPKLEKLREIVKEQLGK--NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHhc-ccCChHHHHHHHHHHHHHhc--CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 00000 01112234455555443322 24589999999999999999877432211 000 01
Q ss_pred HHHHHHHhhccCCCC-----------------cceeEEecCCcCCcchhhhhhhhhccCCCCceEEEEcccCCcccccch
Q 000892 854 AVVEEHSEDFRLDPL-----------------LNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1236)
Q Consensus 854 ~~~~~~~~~fr~D~~-----------------~~lh~~~Nl~dwnp~~d~QA~R~hRiGQ~k~V~VyRlit~~Tiee~i~ 916 (1236)
..+.+..++|+.... ....+.|+. +|++..-.| |+||+|+.+++.||.|++++|+||.++
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~-~~s~~r~iQ--R~GR~gR~~~~~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP-VPSEIRSIQ--RKGRTGRQEEGRVVVLIAKGTRDEAYY 486 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC-CCCHHHHHH--HhcccCcCCCCEEEEEEeCCChHHHHH
Confidence 233344445554322 233556665 488876555 888888888899999999999999877
Q ss_pred hHh
Q 000892 917 NAR 919 (1236)
Q Consensus 917 ~~~ 919 (1236)
..+
T Consensus 487 ~~~ 489 (773)
T PRK13766 487 WSS 489 (773)
T ss_pred HHh
Confidence 543
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.42 E-value=1.2e-11 Score=149.21 Aligned_cols=298 Identities=16% Similarity=0.081 Sum_probs=171.9
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.+|||||.. ++.||.+.+.+++..+ -.+..|.|..+.. . ..+|+++||+++.+....
T Consensus 82 ~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~---------~---~~~i~vat~qtl~~~~~l--------- 139 (442)
T COG1061 82 STLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKEL---------E---PAKVTVATVQTLARRQLL--------- 139 (442)
T ss_pred CEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceecc---------C---CCcEEEEEhHHHhhhhhh---------
Confidence 499999986 6789999999988521 2455666654321 1 157999999999985200
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCe-EEEEeccCCCCChhhhhhhhhccCCCCCC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKH-RWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~-RwlLTGTPiqN~L~DL~sLL~FL~p~~f~ 657 (1236)
..+..-+|+.||+||+|++..+... +.+..+.+.+ +++|||||...+-..+.-++.+++|-
T Consensus 140 -------------~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~--- 201 (442)
T COG1061 140 -------------DEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPI--- 201 (442)
T ss_pred -------------hhhcccccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcCCe---
Confidence 1233347999999999999765432 3344455556 99999999855433443344433321
Q ss_pred ChhHHHHHhcCCCcCCccchHHHHHHHHHhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000892 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1236)
Q Consensus 658 ~~~~F~~~~~~pi~~g~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~ 737 (1236)
.......+..++--|.|.....+++.++..+...|...........+.
T Consensus 202 -------------------------------vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~- 249 (442)
T COG1061 202 -------------------------------VYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA- 249 (442)
T ss_pred -------------------------------EeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh-
Confidence 122222222222338888899999999999999998754332111000
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCCCCCcccccccCCCCCHHHHHHHHHHHHHHh
Q 000892 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIE 817 (1236)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~~~~~e 817 (1236)
+ .. ....-..+.+..+ .. .....+..++..-.
T Consensus 250 ----------~--------------------~~--~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~-- 281 (442)
T COG1061 250 ----------R--------------------GT--LRAENEARRIAIA-------------SE-RKIAAVRGLLLKHA-- 281 (442)
T ss_pred ----------h--------------------hh--hhHHHHHHHHhhc-------------cH-HHHHHHHHHHHHhc--
Confidence 0 00 0000001111111 00 00111222221111
Q ss_pred hhhhccchhhhhhhHhhHHHHHHhHhHH----HHHHHHHHHHHHHHHhhccCCCCcceeE------EecCC---------
Q 000892 818 GEEALRKLVMALNGLAGIALIEKNLSQA----VSLYKEAMAVVEEHSEDFRLDPLLNIHL------HHNLT--------- 878 (1236)
Q Consensus 818 ~eea~rkvLifsq~la~L~iIe~~l~~a----~~~y~~~l~~~~~~~~~fr~D~~~~lh~------~~Nl~--------- 878 (1236)
...++++|.........|...+... ..........+++..+.|+...+..|.. +.+.-
T Consensus 282 ---~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 ---RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred ---CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC
Confidence 2368899999988888888877655 3344444556777777787755433321 12221
Q ss_pred -cCCcchhhhhh-hhhc-cCCCCc--eEEEEcccCCcccccchhHhh
Q 000892 879 -EILPMVANCAT-ELSQ-NEQHFP--GCSEKAFKIHSIETCDENARK 920 (1236)
Q Consensus 879 -dwnp~~d~QA~-R~hR-iGQ~k~--V~VyRlit~~Tiee~i~~~~k 920 (1236)
.=.+..-.|.. |..| ...+.. +..|-+++..+.++.+.....
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 22334556776 9999 555555 777788999998888764333
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.36 E-value=3.8e-11 Score=147.25 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=69.6
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeE-EEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V-~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
++||+||. .|+.||.++|.+|...+...+ .++.|.... ...+|+|+||+.+.+...
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------------~~~~I~VaT~qsl~~~~~--------- 217 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------------TDAPIVVSTWQSAVKQPK--------- 217 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------------CCCCEEEeeHHHHhhchh---------
Confidence 79999998 588999999999864222333 445554321 347899999999865310
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHh-ccCeEEEEeccCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQ 638 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPiq 638 (1236)
..+ -.|++||+||||++.... ....+..+ ++.++++|||||..
T Consensus 218 --------------~~~--~~~~~iIvDEaH~~~~~~--~~~il~~~~~~~~~lGLTATp~~ 261 (501)
T PHA02558 218 --------------EWF--DQFGMVIVDECHLFTGKS--LTSIITKLDNCKFKFGLTGSLRD 261 (501)
T ss_pred --------------hhc--cccCEEEEEchhcccchh--HHHHHHhhhccceEEEEeccCCC
Confidence 011 267899999999997532 34455566 58899999999954
No 26
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.30 E-value=7.2e-12 Score=144.26 Aligned_cols=131 Identities=21% Similarity=0.333 Sum_probs=91.5
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+||+|-+++ +.||..+|..|..-..-.++.+....+.++ -...+||||||.++..--.. ....
T Consensus 346 K~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~----------~~~~gvvvsTYsMva~t~kR----S~ea 411 (776)
T KOG1123|consen 346 KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERF----------PSGAGVVVTTYSMVAYTGKR----SHEA 411 (776)
T ss_pred ccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccC----------CCCCcEEEEeeehhhhcccc----cHHH
Confidence 57899999886 799999999998655556777877665432 24578999999999753211 1111
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~ 657 (1236)
. .+...|....|..+||||.|.+ |.....+.+.-+.+..++.||+|-+.. +|=..=|+||--+.+.
T Consensus 412 e----------k~m~~l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRE--DdKI~DLNFLIGPKlY 477 (776)
T KOG1123|consen 412 E----------KIMDFLRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRE--DDKITDLNFLIGPKLY 477 (776)
T ss_pred H----------HHHHHHhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeec--cccccccceeecchhh
Confidence 1 1223578889999999999998 444445555567899999999999864 2333345777544333
No 27
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.30 E-value=2e-11 Score=127.98 Aligned_cols=124 Identities=26% Similarity=0.291 Sum_probs=72.7
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcC--CCccc-----ccccccchhhhccCccEEEEeHHHHhhhcccCC
Q 000892 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEG--ARNSS-----LSDTSIMDISELVGADIVLTTYDVLKEDLSHDS 571 (1236)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G--~~~~~-----~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~ 571 (1236)
++|||||. +|+.||.++|..+... ...+..... ..... ...............++++++|+.+........
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEK 130 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccc
Confidence 79999999 7889999999887752 222211110 00000 000011122345678899999999998653211
Q ss_pred CCcccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCC
Q 000892 572 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1236)
Q Consensus 572 ~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPi 637 (1236)
....... ....+..-.+++||+||||+..+... ++.+....+.+++.|||||.
T Consensus 131 ~~~~~~~-----------~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 131 KIDESAR-----------RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp ------------------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccccchh-----------hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 0000000 01124456788999999999875443 56666688999999999995
No 28
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.28 E-value=2.1e-11 Score=127.87 Aligned_cols=114 Identities=22% Similarity=0.227 Sum_probs=75.7
Q ss_pred CcEEEEeC-CchHHHHHHHHHhcCCCCC-CeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 499 GATLIVCP-APILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~Ei~k~~~~g~-L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
+++|||+| .++..||..++.++.+... .....+++..... .........++++++||+.+.......
T Consensus 55 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~t~~~l~~~~~~~------ 123 (201)
T smart00487 55 KRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKRE-----QLRKLESGKTDILVTTPGRLLDLLEND------ 123 (201)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHH-----HHHHHhcCCCCEEEeChHHHHHHHHcC------
Confidence 57999999 4678999999999886322 4555666643211 001111223499999999998865321
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccC-chHHHHH-HHHHh-ccCeEEEEeccCCCC
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-NAAAATE-MALRL-YAKHRWCITGTPIQR 639 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN-~~Sk~~k-al~~L-~a~~RwlLTGTPiqN 639 (1236)
.+....|+++|+||+|++.+ ....... .+..+ +..+++++||||..+
T Consensus 124 ----------------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 124 ----------------LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred ----------------CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 13445688999999999986 3333333 33444 578899999999643
No 29
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.27 E-value=2.6e-11 Score=119.70 Aligned_cols=110 Identities=18% Similarity=0.122 Sum_probs=77.3
Q ss_pred CcEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+||+||...+ .||..++.++... .+.+.++++...... .........+|+++||+.+.......
T Consensus 31 ~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~i~i~t~~~~~~~~~~~------- 97 (144)
T cd00046 31 GQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ-----QEKLLSGKTDIVVGTPGRLLDELERL------- 97 (144)
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH-----HHHHhcCCCCEEEECcHHHHHHHHcC-------
Confidence 689999999865 5667777777643 477777777544321 01223467899999999988764310
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHH---HHHHHhccCeEEEEeccC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT---EMALRLYAKHRWCITGTP 636 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~---kal~~L~a~~RwlLTGTP 636 (1236)
.+....|++||+||+|.+.+...... ...........+++||||
T Consensus 98 ---------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 98 ---------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ---------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 13345799999999999988765443 333446778899999999
No 30
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.90 E-value=7.8e-09 Score=136.01 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=66.8
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEE-EEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~-vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
+++|++||.. |+.||.++|..+..+....+. +|.... .. ....-....|+|+||.++.+........
T Consensus 464 ~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~-L~-------~~~~~~~~~I~iaTiQtl~~~~~~~~~~--- 532 (1123)
T PRK11448 464 RRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKG-LE-------DKFPEDETKVHVATVQGMVKRILYSDDP--- 532 (1123)
T ss_pred CeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhh-hh-------hhcccCCCCEEEEEHHHHHHhhhccccc---
Confidence 5799999975 889999999998542221211 221110 00 1111235789999999998754211000
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch----------------HHHHHHHHHhccCeEEEEeccCCCC
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA----------------AAATEMALRLYAKHRWCITGTPIQR 639 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~----------------Sk~~kal~~L~a~~RwlLTGTPiqN 639 (1236)
. ..+.--.|++||+||||+.-... ...++.+....-..+++|||||..+
T Consensus 533 ------------~--~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~ 597 (1123)
T PRK11448 533 ------------M--DKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALH 597 (1123)
T ss_pred ------------c--ccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccc
Confidence 0 01223478899999999952100 1233333332224789999999853
No 31
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.90 E-value=9.8e-08 Score=112.30 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=88.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
|..|+++|+ .|+.|=..-+.+.+.-+.-.+..+.|.-... .....+.+..|++.|-+++.+|+..
T Consensus 59 ~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~------~R~~~w~~~kVfvaTPQvveNDl~~-------- 124 (542)
T COG1111 59 GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPE------EREELWAKKKVFVATPQVVENDLKA-------- 124 (542)
T ss_pred CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChH------HHHHHHhhCCEEEeccHHHHhHHhc--------
Confidence 469999997 7999999999999875567888899864431 1234567788999999999998742
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhcc-CeEEEEeccCCCCChhhhhhhhhccCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPiqN~L~DL~sLL~FL~p~ 654 (1236)
..+..-.+.++|+||||+--... ...++...+-.. .+.++||+||= ++++.+...++=|+.+
T Consensus 125 --------------Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe 189 (542)
T COG1111 125 --------------GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIE 189 (542)
T ss_pred --------------CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcc
Confidence 12444567899999999954333 333333333333 36889999995 3455555555555544
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.67 E-value=2.3e-07 Score=99.88 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=75.6
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhc-cCccEEEEeHHHHhhhcccCCCCccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
..+|||||.. ++.||...+.++.....+++..++|...... ..... ...+|+|+|.+.+...+...
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~iiv~T~~~l~~~l~~~------ 137 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDK------QIRKLKRGPHIVVATPGRLLDLLERG------ 137 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEEChHHHHHHHHcC------
Confidence 4699999985 7889999999987656788888888654321 11222 47899999999887654310
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch-HHHHH-HHHHhc-cCeEEEEeccCC
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATE-MALRLY-AKHRWCITGTPI 637 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~k-al~~L~-a~~RwlLTGTPi 637 (1236)
.+.--.++++|+||+|.+.+.. ..... ....+. ....+++|+||-
T Consensus 138 ----------------~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 138 ----------------KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ----------------CCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 0122346789999999876543 22222 333444 467899999998
No 33
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.58 E-value=3e-07 Score=116.61 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=64.9
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.++|||||.. |..||.++|.++.+. .. .+..... .......-.+.+|+|||+.+|.+.....
T Consensus 294 ~~vl~lvdR~~L~~Q~~~~f~~~~~~-~~-----~~~~s~~----~L~~~l~~~~~~iivtTiQk~~~~~~~~------- 356 (667)
T TIGR00348 294 PKVFFVVDRRELDYQLMKEFQSLQKD-CA-----ERIESIA----ELKRLLEKDDGGIIITTIQKFDKKLKEE------- 356 (667)
T ss_pred CeEEEEECcHHHHHHHHHHHHhhCCC-CC-----cccCCHH----HHHHHHhCCCCCEEEEEhHHhhhhHhhh-------
Confidence 4799999985 789999999998641 11 1111000 0001111124679999999998632110
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHH-HHhccCeEEEEeccCCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLYAKHRWCITGTPIQR 639 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal-~~L~a~~RwlLTGTPiqN 639 (1236)
...+ ........||+||||+.-.. ...+.+ ..++...++++||||+..
T Consensus 357 ------~~~~------~~~~~~~lvIvDEaHrs~~~--~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 357 ------EEKF------PVDRKEVVVIFDEAHRSQYG--ELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred ------hhcc------CCCCCCEEEEEEcCccccch--HHHHHHHhhCCCCcEEEEeCCCccc
Confidence 0000 01111237999999986432 233444 357778999999999864
No 34
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.56 E-value=4e-07 Score=114.98 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=74.3
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.+||++|.. |..||.+++.+++++-++++.+++|........ .........+.+|||.|...+.....
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~-~~~~~i~~g~~~IiVgT~~ll~~~~~---------- 354 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRK-ELLETIASGQIHLVVGTHALIQEKVE---------- 354 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHH-HHHHHHhCCCCCEEEecHHHHhcccc----------
Confidence 589999996 558999999999875468999999875432100 00111123467999999988764321
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhc---cCeEEEEeccCCCCCh
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY---AKHRWCITGTPIQRKL 641 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~---a~~RwlLTGTPiqN~L 641 (1236)
+ -+..+||+||+|++.- .+......... ..+.+++|+||+...+
T Consensus 355 ---------------~--~~l~lvVIDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 355 ---------------F--KRLALVIIDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred ---------------c--cccceEEEechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHH
Confidence 2 2356899999999742 22222222333 5779999999987544
No 35
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.48 E-value=7.4e-07 Score=92.61 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=78.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-ccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
+.+||++|. .++.|=.+++.++.....+++..++|...... ..... ....+|+|+|++.|...+...
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ilv~T~~~l~~~~~~~------ 113 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISE-----DQREVLSNQADILVTTPEQLLDLISNG------ 113 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHH-----HHHHHHHTTSSEEEEEHHHHHHHHHTT------
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccc-----cccccccccccccccCcchhhcccccc------
Confidence 379999997 57889999999998755678888877543210 01122 246999999999998765420
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCc-hHH-HHHHHHHh---ccCeEEEEeccCCCCChhhh
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAA-ATEMALRL---YAKHRWCITGTPIQRKLDDL 644 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~Sk-~~kal~~L---~a~~RwlLTGTPiqN~L~DL 644 (1236)
.+.-....+||+||+|.+-.. ... ....+..+ ...+.+++|+||- .++++|
T Consensus 114 ----------------~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~~ 169 (169)
T PF00270_consen 114 ----------------KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEKL 169 (169)
T ss_dssp ----------------SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHHH
T ss_pred ----------------ccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhhC
Confidence 011123688999999998763 222 33333333 2467999999998 655543
No 36
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.48 E-value=1.5e-05 Score=99.03 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=82.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+++.+|.. |+.|=..++..+..+ -.+....|....+.. ........+|++.|-.++.+++....
T Consensus 107 ~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~-----r~~i~~s~~vff~TpQil~ndL~~~~------ 173 (746)
T KOG0354|consen 107 GKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSN-----RGEIVASKRVFFRTPQILENDLKSGL------ 173 (746)
T ss_pred ceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCc-----hhhhhcccceEEeChHhhhhhccccc------
Confidence 6899999985 677777899888763 555555555333211 22445678999999999999875311
Q ss_pred hhhhhhcccCCCcccccc-ccccceeeccccccc-cCch-HHHHHHHHHhc--cCeEEEEeccCCCCChhhhhhhhhccC
Q 000892 578 RRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMV-ESNA-AAATEMALRLY--AKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~-~i~w~rVILDEAH~I-KN~~-Sk~~kal~~L~--a~~RwlLTGTPiqN~L~DL~sLL~FL~ 652 (1236)
.. --.|-++|+||||+- ||.. +...+....++ ...-++||+||= ++++...+.+.=|.
T Consensus 174 ----------------~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~ 236 (746)
T KOG0354|consen 174 ----------------HDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLC 236 (746)
T ss_pred ----------------ccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhh
Confidence 11 135789999999985 4432 55555555544 336789999998 66666555544333
No 37
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.36 E-value=7.8e-06 Score=92.65 Aligned_cols=144 Identities=18% Similarity=0.260 Sum_probs=88.9
Q ss_pred CccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccc-ccc------ceeeccccccccCchH------HHH
Q 000892 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTR-IFW------WRICLDEAQMVESNAA------AAT 618 (1236)
Q Consensus 552 ~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~-i~w------~rVILDEAH~IKN~~S------k~~ 618 (1236)
+.+|+.+||.+|......... .. +-|.+ +.| .+||+||+|..||..+ ++.
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~------~~-----------sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g 198 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGK------YR-----------SRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTG 198 (303)
T ss_pred CCCccchhHHHHHhHHhccCC------cc-----------chHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHH
Confidence 467999999999987431000 00 11222 122 2789999999999764 566
Q ss_pred HHHHHh----ccCeEEEEeccCCCCChhhhhhhhhcc---CC-CCCCChhHHHHHhcCCCcCCccchHHHHHHHHH--hh
Q 000892 619 EMALRL----YAKHRWCITGTPIQRKLDDLYGLLRFL---KS-SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFK--EI 688 (1236)
Q Consensus 619 kal~~L----~a~~RwlLTGTPiqN~L~DL~sLL~FL---~p-~~f~~~~~F~~~~~~pi~~g~~~~~~~L~~lL~--~~ 688 (1236)
.++..| +.-+.+-.|+|.... +..|- ++.=| .+ .+|.+...|.+.+. ++...+++.+..-|+ ..
T Consensus 199 ~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Ym~RLGLWG~gtpf~~~~~f~~a~~----~gGv~amE~vA~dlKa~G~ 272 (303)
T PF13872_consen 199 IAVLELQNRLPNARVVYASATGASE-PRNMA-YMSRLGLWGPGTPFPDFDDFLEAME----KGGVGAMEMVAMDLKARGM 272 (303)
T ss_pred HHHHHHHHhCCCCcEEEecccccCC-Cceee-eeeeccccCCCCCCCCHHHHHHHHH----hcCchHHHHHHHHHHhcch
Confidence 666655 344578899999843 33332 11112 11 24556666665544 455555555544433 35
Q ss_pred hhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHH
Q 000892 689 MCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 725 (1236)
Q Consensus 689 mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~ 725 (1236)
+++| ++..-.-...++.++||+.|.++|+.
T Consensus 273 yiaR-------~LSf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 273 YIAR-------QLSFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred heee-------ecccCCceEEEEEecCCHHHHHHhcC
Confidence 5665 44466677889999999999999984
No 38
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.32 E-value=2.3e-06 Score=108.94 Aligned_cols=111 Identities=18% Similarity=0.263 Sum_probs=73.4
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.+||++|.. |..|+.+.+.+++++-++++.+++|........ ...........+|||.|...+...+.
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~-~~~~~l~~g~~~IvVgT~~ll~~~v~---------- 380 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERR-EILEAIASGEADIVIGTHALIQDDVE---------- 380 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHH-HHHHHHhCCCCCEEEchHHHhcccch----------
Confidence 589999996 557999999999875458999999975421100 00011122468999999988754321
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHh-ccCeEEEEeccCCCCCh
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRKL 641 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPiqN~L 641 (1236)
+. +..+||+||+|++. ......+... ...+.+++|+||++..+
T Consensus 381 ---------------~~--~l~lvVIDE~Hrfg---~~qr~~l~~~~~~~~iL~~SATp~prtl 424 (681)
T PRK10917 381 ---------------FH--NLGLVIIDEQHRFG---VEQRLALREKGENPHVLVMTATPIPRTL 424 (681)
T ss_pred ---------------hc--ccceEEEechhhhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHH
Confidence 22 35679999999973 2223333333 24678999999987543
No 39
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.25 E-value=3.8e-06 Score=104.10 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=70.0
Q ss_pred CcEEEEeC-CchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+++|.++= .+|+.|=..++.+|.|.++.. -...+... ...+.|.|.||.++........+
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~-n~i~~~~~-------------~~s~~i~lsTyqt~~~~~~~~~~----- 276 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFLPFGTKM-NKIEDKKG-------------DTSSEIYLSTYQTMTGRIEQKED----- 276 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhCCCccce-eeeecccC-------------CcceeEEEeehHHHHhhhhcccc-----
Confidence 67899986 478899999999999844322 22222111 12588999999999986543110
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1236)
...++..-+||+||+||||+- ..+..+.+...-...+.+||+||=.
T Consensus 277 ------------~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 277 ------------EYRRFGPGFFDLIVIDEAHRG---IYSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred ------------ccccCCCCceeEEEechhhhh---HHhhhHHHHHHHHHHHHhhccCccc
Confidence 112466678999999999982 1223334444445556777999977
No 40
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.21 E-value=1e-05 Score=97.87 Aligned_cols=118 Identities=16% Similarity=0.070 Sum_probs=74.1
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
..+||++|.. |..|+.+.+..+.....+++..+.|...... ........++|+|+|.+.|...+..
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~-----~~~~l~~~~~IlV~Tp~rl~~~~~~-------- 140 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMN-----HAEVFSENQDIVVATPGRLLQYIKE-------- 140 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH-----HHHHhcCCCCEEEEChHHHHHHHHc--------
Confidence 4689999986 7789888888776544688888887543210 0111224679999999988765421
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhc-cCeEEEEeccCCCCChhh
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPIQRKLDD 643 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPiqN~L~D 643 (1236)
..+..-...+||+||||++-... ......+..+. ....+++|+|+-...+.+
T Consensus 141 --------------~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~ 195 (434)
T PRK11192 141 --------------ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQD 195 (434)
T ss_pred --------------CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHH
Confidence 01223356789999999875432 22222223333 345689999986433433
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=7.6e-06 Score=100.13 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=79.9
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+|||+|. +|+.||...+... .+++..+.|....... ...........++|+++|.+.+......
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~-~~i~~~~~~~~~~il~~TPe~l~~~~~~-------- 118 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQ-KNVLTDLKDGKIKLLYVTPEKCSASNRL-------- 118 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHcCchhH--------
Confidence 468999998 5778899988764 4666666665432100 0000111235689999999998653210
Q ss_pred hhhhhhcccCCCccccc-cccccceeeccccccccCch-------HHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhh
Q 000892 578 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~ 649 (1236)
. ..+ ......+||+||||.+-... .........++....+++|+||-.....|+...+.
T Consensus 119 ---~----------~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 119 ---L----------QTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred ---H----------HHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcC
Confidence 0 012 33467899999999986432 11122222345667899999998877777777665
Q ss_pred ccCC
Q 000892 650 FLKS 653 (1236)
Q Consensus 650 FL~p 653 (1236)
+-.|
T Consensus 186 l~~~ 189 (470)
T TIGR00614 186 LKNP 189 (470)
T ss_pred CCCC
Confidence 5444
No 42
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.21 E-value=8e-06 Score=108.48 Aligned_cols=112 Identities=18% Similarity=0.180 Sum_probs=72.3
Q ss_pred CcEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+||+||...+ .|..+.|.+.+..-.+++.++.|....... ............||||+|++.+...+.
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL~~~v~--------- 719 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLLQSDVK--------- 719 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHHhCCCC---------
Confidence 469999999754 799999988665334677777765432100 000011112467999999987764321
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhc-cCeEEEEeccCCCCCh
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKL 641 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGTPiqN~L 641 (1236)
+ -...+||+||+|++... ....++.++ ....+++|+||+++.+
T Consensus 720 ----------------~--~~L~lLVIDEahrfG~~---~~e~lk~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 720 ----------------W--KDLGLLIVDEEHRFGVR---HKERIKAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred ----------------H--hhCCEEEEechhhcchh---HHHHHHhcCCCCcEEEEcCCCCHHHH
Confidence 1 24678999999998432 234445554 4578999999998654
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.19 E-value=8.7e-06 Score=105.99 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=72.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
..+||+||.. |..|..+.|.+++..-.+++.+++|....... ......-...+.||||+|...+...+.
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~-~~~~~~l~~g~~dIVIGTp~ll~~~v~--------- 570 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQ-NEILKELASGKIDILIGTHKLLQKDVK--------- 570 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHH-HHHHHHHHcCCceEEEchHHHhhCCCC---------
Confidence 3589999997 55799999999876445777777775332100 000011112468999999977654321
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhc-cCeEEEEeccCCCCCh
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKL 641 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGTPiqN~L 641 (1236)
+. +..+||+||+|++.- .....++.+. ....+++|+||++..+
T Consensus 571 ----------------f~--~L~llVIDEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl 614 (926)
T TIGR00580 571 ----------------FK--DLGLLIIDEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTL 614 (926)
T ss_pred ----------------cc--cCCEEEeecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHH
Confidence 22 346899999999742 2334455554 4678999999987654
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=98.18 E-value=1.5e-05 Score=101.72 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=74.9
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+++|+|. +|..|+.+++.++.. -+.++..+.|.... ....+..+||+|+|++.+..-..+.
T Consensus 66 ~k~v~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~--------~~~~~~~~dIiv~Tpek~~~l~~~~------- 129 (674)
T PRK01172 66 LKSIYIVPLRSLAMEKYEELSRLRS-LGMRVKISIGDYDD--------PPDFIKRYDVVILTSEKADSLIHHD------- 129 (674)
T ss_pred CcEEEEechHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--------ChhhhccCCEEEECHHHHHHHHhCC-------
Confidence 357899997 577899999998653 25778777775432 2233467899999999876543210
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch-HHHHHHH-H---Hhc-cCeEEEEeccCCCCChhhhhhhhhcc
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMA-L---RLY-AKHRWCITGTPIQRKLDDLYGLLRFL 651 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal-~---~L~-a~~RwlLTGTPiqN~L~DL~sLL~FL 651 (1236)
+..--...+||+||+|++.+.. ......+ . .+. ..+.+++|+|+- +..++- .|+
T Consensus 130 ---------------~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la---~wl 189 (674)
T PRK01172 130 ---------------PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELA---QWL 189 (674)
T ss_pred ---------------hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH---HHh
Confidence 0111246799999999996432 2222222 2 222 345789999973 344443 455
Q ss_pred CCCC
Q 000892 652 KSSP 655 (1236)
Q Consensus 652 ~p~~ 655 (1236)
+...
T Consensus 190 ~~~~ 193 (674)
T PRK01172 190 NASL 193 (674)
T ss_pred CCCc
Confidence 4433
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=98.18 E-value=1.8e-05 Score=102.09 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=74.9
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+|+|+|. +|+.|+..++.++.+ -++++.++.|.... ....+..+||+|+|++.+..-..+.
T Consensus 68 ~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~--------~~~~l~~~~IiV~Tpek~~~llr~~------- 131 (737)
T PRK02362 68 GKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDS--------RDEWLGDNDIIVATSEKVDSLLRNG------- 131 (737)
T ss_pred CcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCc--------cccccCCCCEEEECHHHHHHHHhcC-------
Confidence 468999997 688999999998753 25889999986533 1233467899999999876543210
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch-HHHHHH-HHHh----ccCeEEEEeccCCCCChhhhh
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEM-ALRL----YAKHRWCITGTPIQRKLDDLY 645 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~ka-l~~L----~a~~RwlLTGTPiqN~L~DL~ 645 (1236)
...+ -...+||+||+|++.+.. ...... +.++ ...+.++||+|+- +..|+.
T Consensus 132 -------------~~~l--~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la 188 (737)
T PRK02362 132 -------------APWL--DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELA 188 (737)
T ss_pred -------------hhhh--hhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHH
Confidence 0011 245899999999997532 222222 2333 2456789999974 355554
No 46
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.12 E-value=2.3e-05 Score=95.55 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=70.9
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.+|||||.- |..||.+++.++...-.+++....|...... ........+||+|+|.+.|......
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~-----~~~~l~~~~~IiV~TP~rL~~~~~~--------- 142 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINP-----QMMKLRGGVDVLVATPGRLLDLEHQ--------- 142 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHH-----HHHHHcCCCcEEEEChHHHHHHHHc---------
Confidence 589999985 7789999999887544577766666533210 0111234689999999998764321
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhcc-CeEEEEeccCC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPi 637 (1236)
..+.--..++||+||||++-... ......+..+.. ...+++|+|+-
T Consensus 143 -------------~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 143 -------------NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred -------------CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc
Confidence 01222346789999999875433 222333444543 35799999964
No 47
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.05 E-value=3.2e-05 Score=94.37 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=71.6
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhh-hccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDIS-ELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~-~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
.+||+||.- |..||.++++++... ..+++..+.|...... ... .....+|+|+|.+.+...+..
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~------~~~~l~~~~~IvV~Tp~rl~~~l~~------- 140 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGP------QIDSLEHGAHIIVGTPGRILDHLRK------- 140 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHH------HHHHhcCCCCEEEEChHHHHHHHHc-------
Confidence 489999985 778999999987531 2578888777543211 111 124679999999998765431
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhc-cCeEEEEeccCC
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPi 637 (1236)
..+.--.+.+||+||||.+-+.. ......+..++ ....+++|+|+.
T Consensus 141 ---------------~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 141 ---------------GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred ---------------CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc
Confidence 01222356789999999875432 33334444454 345789999974
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.02 E-value=3.2e-05 Score=97.41 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=81.0
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+|||+|. +|+.++...+... .+.+..+++....... ...........++|+++|.+.+.....
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~l~~~~~~il~~tpe~l~~~~~--------- 119 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQ-QDIEKALVNGELKLLYVAPERLEQDYF--------- 119 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH-HHHHHHHhCCCCCEEEEChhHhcChHH---------
Confidence 468999997 6788999988875 4667777765332100 000111223568999999998865321
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch-------HHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhc
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~F 650 (1236)
...+......+||+||||.+.... .+.......++....+++|+|+......|+...+.+
T Consensus 120 -------------~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~ 186 (591)
T TIGR01389 120 -------------LNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRL 186 (591)
T ss_pred -------------HHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 012445678899999999985422 122233334455568999999988877777766554
Q ss_pred cC
Q 000892 651 LK 652 (1236)
Q Consensus 651 L~ 652 (1236)
-.
T Consensus 187 ~~ 188 (591)
T TIGR01389 187 AD 188 (591)
T ss_pred CC
Confidence 33
No 49
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.00 E-value=2.4e-05 Score=100.01 Aligned_cols=122 Identities=14% Similarity=0.094 Sum_probs=84.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
++.+-|||. +|..+=..||.+|-. -+++|.+++|.... ....+.++|||||||+.+-.-..+.
T Consensus 77 ~k~vYivPlkALa~Ek~~~~~~~~~-~GirV~~~TgD~~~--------~~~~l~~~~ViVtT~EK~Dsl~R~~------- 140 (766)
T COG1204 77 GKVVYIVPLKALAEEKYEEFSRLEE-LGIRVGISTGDYDL--------DDERLARYDVIVTTPEKLDSLTRKR------- 140 (766)
T ss_pred CcEEEEeChHHHHHHHHHHhhhHHh-cCCEEEEecCCccc--------chhhhccCCEEEEchHHhhHhhhcC-------
Confidence 578999997 677888888884432 37999999998654 4577899999999999887644321
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCc-h-----HHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhhcc
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-A-----AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 651 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~-----Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL 651 (1236)
+......+.||+||+|++... . +-.+++...-...+-++||+|= ....-+-.||
T Consensus 141 ---------------~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl-----pN~~evA~wL 200 (766)
T COG1204 141 ---------------PSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL-----PNAEEVADWL 200 (766)
T ss_pred ---------------cchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeec-----CCHHHHHHHh
Confidence 123345679999999999877 3 3444443333335678899992 2233445677
Q ss_pred CCCCC
Q 000892 652 KSSPF 656 (1236)
Q Consensus 652 ~p~~f 656 (1236)
+..++
T Consensus 201 ~a~~~ 205 (766)
T COG1204 201 NAKLV 205 (766)
T ss_pred CCccc
Confidence 66554
No 50
>PTZ00424 helicase 45; Provisional
Probab=98.00 E-value=4.8e-05 Score=90.87 Aligned_cols=111 Identities=16% Similarity=0.075 Sum_probs=69.4
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-ccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
..+|||+|.. |..|+.+.+..+.....+.+....|...... .... ....+|+|+|.+.+...+...
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Ivv~Tp~~l~~~l~~~------ 164 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRD------DINKLKAGVHMVVGTPGRVYDMIDKR------ 164 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH------HHHHHcCCCCEEEECcHHHHHHHHhC------
Confidence 4689999985 6788888888876533455555555432210 1111 234689999999877543210
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhcc-CeEEEEeccCC
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPi 637 (1236)
.+.--.+++||+||||.+.... ......+..+.. ...+++|+|+.
T Consensus 165 ----------------~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 165 ----------------HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred ----------------CcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 1222356789999999875432 344555555543 46788999974
No 51
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.99 E-value=3.9e-05 Score=96.75 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=78.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+|||+|. +|+.||.+.+... .+.+..+++....... ............+++++|.+.+..+..
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~--------- 131 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNF--------- 131 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHH---------
Confidence 468999998 5778899888875 3566666654322100 000011123467899999998765310
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch---HHHHHHHH----HhccCeEEEEeccCCCCChhhhhhhhhc
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~---Sk~~kal~----~L~a~~RwlLTGTPiqN~L~DL~sLL~F 650 (1236)
...+......+||+||||.+-... ...++.+. .++....+++|+|+-.....++...+.+
T Consensus 132 -------------~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l 198 (607)
T PRK11057 132 -------------LEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL 198 (607)
T ss_pred -------------HHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCC
Confidence 012444567899999999986432 11222222 3345668999999988777777766654
Q ss_pred cCC
Q 000892 651 LKS 653 (1236)
Q Consensus 651 L~p 653 (1236)
-.|
T Consensus 199 ~~~ 201 (607)
T PRK11057 199 NDP 201 (607)
T ss_pred CCe
Confidence 443
No 52
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.97 E-value=6e-05 Score=93.45 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=71.0
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchh-hhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDI-SELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~-~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
..+|||+|.. |..|+.+++..+...-.+++..+.|...... .. .-...++|+|+|.+.|..-+...
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~------q~~~l~~~~~IiV~TPgrL~~~l~~~------ 264 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQ------QLYRIQQGVELIVGTPGRLIDLLSKH------ 264 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHH------HHHHhcCCCCEEEECHHHHHHHHHcC------
Confidence 4689999985 7789999998887533455554444322110 11 11245799999999887654210
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCc--hHHHHHHHHHhccCeEEEEeccCC
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGTPI 637 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~a~~RwlLTGTPi 637 (1236)
.+..-...+||+||||++-.. .....+.+..+.....+++|+|..
T Consensus 265 ----------------~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 265 ----------------DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred ----------------CccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 011223567999999987543 234445556667778899999964
No 53
>PTZ00110 helicase; Provisional
Probab=97.96 E-value=5.6e-05 Score=94.22 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=69.8
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.+|||||.- |..|+.+++.++.....+++.+..|...... .........+|+|+|.+.|...+...
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~-----q~~~l~~~~~IlVaTPgrL~d~l~~~-------- 271 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRG-----QIYALRRGVEILIACPGRLIDFLESN-------- 271 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHH-----HHHHHHcCCCEEEECHHHHHHHHHcC--------
Confidence 489999985 7789999999988654566665555432210 01112245799999999887654310
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhc-cCeEEEEeccC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTP 636 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTP 636 (1236)
.+.--...+||+||||++-... -...+.+..+. ....+++|+|.
T Consensus 272 --------------~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 272 --------------VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred --------------CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 1112246789999999876543 23334444453 34578899995
No 54
>PRK00254 ski2-like helicase; Provisional
Probab=97.93 E-value=0.0001 Score=94.89 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=75.6
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+|+|+|. .++.|+.+++.+|.. -++++..++|.... ....+..+||+|+|++.+..-+.+.
T Consensus 69 ~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~--------~~~~~~~~~IiV~Tpe~~~~ll~~~------- 132 (720)
T PRK00254 69 GKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDS--------TDEWLGKYDIIIATAEKFDSLLRHG------- 132 (720)
T ss_pred CeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCC--------chhhhccCCEEEEcHHHHHHHHhCC-------
Confidence 468999998 577899999988643 25888889886542 1223467899999999876543210
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCc--hHHHHHHHHHhc-cCeEEEEeccCCCCChhhhhh
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYG 646 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPiqN~L~DL~s 646 (1236)
. ..+ -...+||+||+|.+... .......+..+. ....+++|+|+- +..|+-.
T Consensus 133 -------~------~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 133 -------S------SWI--KDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred -------c------hhh--hcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH
Confidence 0 012 24578999999999643 233333444443 456788999974 3555543
No 55
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.91 E-value=0.0001 Score=89.14 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=71.2
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-ccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
..+||+||.. |..||.+++.++...-.+++..+.|...... .... ....||+|+|.+.+...+..
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~------~~~~l~~~~~IlV~TP~~l~~~l~~------- 150 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK------QLKVLESGVDILIGTTGRLIDYAKQ------- 150 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEECHHHHHHHHHc-------
Confidence 4689999985 7789999988876544688888777543211 1111 23579999999998765421
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhcc---CeEEEEeccCC
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA---KHRWCITGTPI 637 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a---~~RwlLTGTPi 637 (1236)
..+.--...+||+||||++-+.. ......+..+.. ...+++|+|+-
T Consensus 151 ---------------~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 151 ---------------NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred ---------------CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCC
Confidence 01223356789999999875432 222333344432 33578899964
No 56
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.88 E-value=0.00012 Score=89.87 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=71.1
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
..+|||+|.. |..||.+++..+...-++++..+.|...... ..........+|+|+|.+.|......
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~----~~~~~~~~~~~Iiv~TP~~Ll~~~~~-------- 230 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDK----QLKQLEARFCDILVATPGRLLDFNQR-------- 230 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHH----HHHHHhCCCCCEEEECHHHHHHHHHc--------
Confidence 4689999985 7789999988876544678888887543210 00111124579999999998653211
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhc---cCeEEEEeccCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~---a~~RwlLTGTPi 637 (1236)
..+.--...+||+||+|.+.+.. ....+.+..+. ....+++|+|..
T Consensus 231 --------------~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 231 --------------GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred --------------CCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 00112245789999999986543 22333344442 246789999964
No 57
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.85 E-value=6.4e-06 Score=105.27 Aligned_cols=107 Identities=12% Similarity=-0.040 Sum_probs=75.3
Q ss_pred HHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHHH--HHHHHHHhhccC-CCC----cceeEEecCC---------
Q 000892 815 KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM--AVVEEHSEDFRL-DPL----LNIHLHHNLT--------- 878 (1236)
Q Consensus 815 ~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~l--~~~~~~~~~fr~-D~~----~~lh~~~Nl~--------- 878 (1236)
....++.+.++++|+|....+++++..+..-........ ....+-...|.- |-+ +....+.||.
T Consensus 1214 ~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d~~dc~~~fk~I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1214 YIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKSIDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred HHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcchhhhhhhcccceEEEEEeccCcccccHHhhhhhheec
Confidence 446677789999999999999999987654433332221 122333333322 211 1112344444
Q ss_pred -cCCcchhhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhh
Q 000892 879 -EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKC 921 (1236)
Q Consensus 879 -dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~~~~k~ 921 (1236)
=.||..+.||+ |+|||||++++.|||+|-.+||||.|+.+.+-
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~ 1338 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITS 1338 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhh
Confidence 58999999999 99999999999999999999999999976654
No 58
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.82 E-value=0.00016 Score=90.71 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=71.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh-ccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
..+|||||.- |..|+.+++.++...-.+++..++|...... .... ...+||||+|.+.|...+...
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~------q~~~l~~~~dIiV~TP~rL~~~l~~~------ 152 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDK------QRELLQQGVDVIIATPGRLIDYVKQH------ 152 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHHhCCCCEEEECHHHHHHHHHhc------
Confidence 4699999985 7789999999987655678887777543210 1111 235799999999887654210
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhc---cCeEEEEeccCC
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~---a~~RwlLTGTPi 637 (1236)
..+......+|||||||.+-... ......+..+. ....+++|+|.-
T Consensus 153 ---------------~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~ 203 (572)
T PRK04537 153 ---------------KVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS 203 (572)
T ss_pred ---------------cccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc
Confidence 01112245679999999875432 22333334444 345788999964
No 59
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.76 E-value=0.00023 Score=90.01 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=69.5
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.+||+||.- |..||.+++.++... ..+++..++|...... .........+|||+|.+.+...+..
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~-----q~~~l~~~~~IVVgTPgrl~d~l~r-------- 142 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV-----QLRALRQGPQIVVGTPGRLLDHLKR-------- 142 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH-----HHHHhcCCCCEEEECHHHHHHHHHc--------
Confidence 589999985 778999998876531 2577777666543210 0111124578999999998765421
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhcc-CeEEEEeccCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPi 637 (1236)
..+.--...+|||||||.+-+.. ......+..++. ...+++|+|.-
T Consensus 143 --------------~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p 191 (629)
T PRK11634 143 --------------GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP 191 (629)
T ss_pred --------------CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC
Confidence 01222346679999999764432 334445555654 45688999963
No 60
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.73 E-value=9.6e-05 Score=90.98 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=81.2
Q ss_pred cEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~SLl-~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
-+...+|+.++ .|=...+.+|+++-+++|....|.-+.... ......-..+..||||=|+..+...+..
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r-~~~l~~l~~G~~~ivVGTHALiQd~V~F--------- 382 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKAR-KEILEQLASGEIDIVVGTHALIQDKVEF--------- 382 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHH-HHHHHHHhCCCCCEEEEcchhhhcceee---------
Confidence 35778899877 699999999999877999999997554311 1111223345689999999998875532
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHh-c-cCeEEEEeccCCCCChh
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-Y-AKHRWCITGTPIQRKLD 642 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~-a~~RwlLTGTPiqN~L~ 642 (1236)
.+..+||+||=|++. ......++.- . ..|-++||+|||+..+.
T Consensus 383 ------------------~~LgLVIiDEQHRFG---V~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 383 ------------------HNLGLVIIDEQHRFG---VHQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred ------------------cceeEEEEecccccc---HHHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 245689999999985 3444444443 3 47999999999999874
No 61
>PRK09401 reverse gyrase; Reviewed
Probab=97.72 E-value=0.00024 Score=94.94 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=56.8
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhh--ccCccEEEEeHHHHhhhcccCCCCcc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE--LVGADIVLTTYDVLKEDLSHDSDRHE 575 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~--l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1236)
..+|||+|.. |+.||.+.+.++.....+.+.+..|......... ...... ...++|+|+|.+.|...+.
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek-~~~~~~l~~~~~~IlV~Tp~rL~~~~~------- 195 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEK-EEFLERLKEGDFDILVTTSQFLSKNFD------- 195 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHH-HHHHHHHhcCCCCEEEECHHHHHHHHH-------
Confidence 4689999985 7789999999988644555554443321100000 001111 2458999999999887542
Q ss_pred cchhhhhhcccCCCccccccccccceeecccccccc
Q 000892 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1236)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1236)
.+....++.||+||||++-
T Consensus 196 -----------------~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 196 -----------------ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred -----------------hccccccCEEEEEChHHhh
Confidence 1334458999999999864
No 62
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.68 E-value=0.00028 Score=90.12 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=65.9
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+||++|.- +..||.+.+.+++ ..++.+++|........ ...........+|||.|.+.+-.
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~-~~~~~~~~g~~~IVVgTrsal~~------------ 254 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERL-DEWRKAKRGEAKVVIGARSALFL------------ 254 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHH-HHHHHHHcCCCCEEEeccHHhcc------------
Confidence 4699999985 7799999999987 36888898864321000 00011122457899999865532
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccC--chHHHH--HHH----HHhccCeEEEEeccCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAAT--EMA----LRLYAKHRWCITGTPIQ 638 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN--~~Sk~~--kal----~~L~a~~RwlLTGTPiq 638 (1236)
++ -+..+||+||+|...- .....+ +.+ ........+++|+||..
T Consensus 255 ---------------p~--~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~ 306 (679)
T PRK05580 255 ---------------PF--KNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSL 306 (679)
T ss_pred ---------------cc--cCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCH
Confidence 22 2467999999997532 211111 111 12344567889999963
No 63
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.68 E-value=0.00018 Score=93.38 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=72.8
Q ss_pred cEEEEeCCchHH-HHHHHHHhcCCC--CCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 500 ATLIVCPAPILA-QWDAEITRHTRP--GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 500 ~tLIV~P~SLl~-QW~~Ei~k~~~~--g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
..|+|-|...+. .=.+.+.++... +.+++.+|+|....... ..-.-...+|+||+|+||-..+-...+
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r-----~~~~~~pp~IllTNpdMLh~~llr~~~---- 187 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEER-----RAIIRNPPDILLTNPDMLHYLLLRNHD---- 187 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHH-----HHHHhCCCCEEEeCHHHHHHHhccCcc----
Confidence 689999987654 335556665542 25889999998654211 122345689999999999874421110
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch-HHHHHHHHHhcc--------CeEEEEecc
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYA--------KHRWCITGT 635 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~a--------~~RwlLTGT 635 (1236)
+ .....-++.+||+||+|..+... |..+-.+++|.- ..-++.|+|
T Consensus 188 ---------~-----~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 188 ---------A-----WLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred ---------h-----HHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 0 01112238999999999987654 777777777642 234778877
No 64
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.68 E-value=0.00038 Score=82.35 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=69.6
Q ss_pred cEEEEeCC-chHHHHHHHHHhcC----CCCCCeEEEEcCCCccc---cc-------cccc-----chhhhccCccEEEEe
Q 000892 500 ATLIVCPA-PILAQWDAEITRHT----RPGSLKTCIYEGARNSS---LS-------DTSI-----MDISELVGADIVLTT 559 (1236)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~----~~g~L~V~vy~G~~~~~---~~-------~~~~-----~~~~~l~~~DVVITT 559 (1236)
++++|+|. ++..+|.+.+.+++ +.....+..+.|..... .. .... .........+|++|+
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 57999997 57788888888876 22357788888862211 00 0000 001112467899999
Q ss_pred HHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCchH-------HHHHHHHHhc-cCeEEE
Q 000892 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-------AATEMALRLY-AKHRWC 631 (1236)
Q Consensus 560 Ye~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S-------k~~kal~~L~-a~~Rwl 631 (1236)
+++|..-.... .+++........-...+||+||+|.+..... .....++... ..+.++
T Consensus 121 p~~l~~llr~~--------------~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 186 (357)
T TIGR03158 121 PDIFVYLTRFA--------------YIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVF 186 (357)
T ss_pred HHHHHHHHhhh--------------ccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEE
Confidence 99987532110 0000000001123678999999999875331 1122222222 357899
Q ss_pred EeccCCC
Q 000892 632 ITGTPIQ 638 (1236)
Q Consensus 632 LTGTPiq 638 (1236)
+||||-.
T Consensus 187 lSAT~~~ 193 (357)
T TIGR03158 187 LSATPDP 193 (357)
T ss_pred EecCCCH
Confidence 9999854
No 65
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.58 E-value=0.00047 Score=90.51 Aligned_cols=114 Identities=18% Similarity=0.067 Sum_probs=66.4
Q ss_pred CcEEEEeCC-chHHHHHHH-------HHhcC-----CCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhh
Q 000892 499 GATLIVCPA-PILAQWDAE-------ITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKE 565 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~E-------i~k~~-----~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~ 565 (1236)
..+|+|+|. .|..|+.+. +.+++ ..+.+++.+++|....... ........+|+|||.+.|..
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r-----~~~l~~~p~IlVtTPE~L~~ 159 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEK-----QKMLKKPPHILITTPESLAI 159 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHH-----HHHHhCCCCEEEecHHHHHH
Confidence 358999998 466676653 33332 1126788999997543210 01112357999999999975
Q ss_pred hcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHh-----ccCeEEEEeccCC
Q 000892 566 DLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-----YAKHRWCITGTPI 637 (1236)
Q Consensus 566 d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L-----~a~~RwlLTGTPi 637 (1236)
-+... .....|. ...+||+||+|.+-+.. ......+.+| ....++++|+|+-
T Consensus 160 ll~~~------------------~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~ 218 (876)
T PRK13767 160 LLNSP------------------KFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE 218 (876)
T ss_pred HhcCh------------------hHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC
Confidence 43210 0001122 34679999999987432 2233333333 2357899999963
No 66
>COG4889 Predicted helicase [General function prediction only]
Probab=97.56 E-value=0.0001 Score=91.08 Aligned_cols=116 Identities=21% Similarity=0.177 Sum_probs=62.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc--------------------cchhhhccCccEEE
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS--------------------IMDISELVGADIVL 557 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~--------------------~~~~~~l~~~DVVI 557 (1236)
..+|.+||+ +|+.|=.+|...-..- .++........+...+... .........--||.
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 468999998 7888876666544321 2333333333332211100 00011112234888
Q ss_pred EeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCch------HHHHHH--HHHhccCeE
Q 000892 558 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA------AAATEM--ALRLYAKHR 629 (1236)
Q Consensus 558 TTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~------Sk~~ka--l~~L~a~~R 629 (1236)
.||+.+-.-... ....--.|++||+||||+--... |..++. -..+++..|
T Consensus 286 sTYQSl~~i~eA----------------------Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kR 343 (1518)
T COG4889 286 STYQSLPRIKEA----------------------QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKR 343 (1518)
T ss_pred EcccchHHHHHH----------------------HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHh
Confidence 888887653210 11233469999999999853211 111111 123678889
Q ss_pred EEEeccCC
Q 000892 630 WCITGTPI 637 (1236)
Q Consensus 630 wlLTGTPi 637 (1236)
+-+|+||=
T Consensus 344 lYmTATPk 351 (1518)
T COG4889 344 LYMTATPK 351 (1518)
T ss_pred hhcccCch
Confidence 99999993
No 67
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.55 E-value=0.00066 Score=87.50 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=69.4
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
..|||+|.- |..|=..++.++.. ..+++.+|+|...... ........+|||||.+++...+-.. +
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~~-~~i~v~~~~Gdt~~~~------r~~i~~~~~IivtTPd~L~~~~L~~---~---- 148 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELTL-RGVRPATYDGDTPTEE------RRWAREHARYVLTNPDMLHRGILPS---H---- 148 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhcc-CCeEEEEEeCCCCHHH------HHHHhcCCCEEEEChHHHHHhhccc---h----
Confidence 689999985 55677777888763 3689999999754311 1111234789999999987432100 0
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCc-hHHHHHHHHHhc--------cCeEEEEeccC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAAATEMALRLY--------AKHRWCITGTP 636 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~Sk~~kal~~L~--------a~~RwlLTGTP 636 (1236)
.+ ....|. +..+||+||||.+... .+.....+.+|. ....+++|+|-
T Consensus 149 ------~~---~~~~l~--~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi 204 (742)
T TIGR03817 149 ------AR---WARFLR--RLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT 204 (742)
T ss_pred ------hH---HHHHHh--cCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 00 001122 3478999999998652 344444444442 24578999994
No 68
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.51 E-value=0.0019 Score=78.47 Aligned_cols=107 Identities=22% Similarity=0.310 Sum_probs=72.6
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCC-eEEEEcCCCcccccccccchhhhcc-CccEEEEeHHHHhhhcccCCCCccc
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSL-KTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L-~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
.+||++|.- |..|=..++.++..+..+ .+++|.|..... +...+. ..||||.|-..|...+...
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~-------Q~~~l~~gvdiviaTPGRl~d~le~g------ 233 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGP-------QLRDLERGVDVVIATPGRLIDLLEEG------ 233 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccH-------HHHHHhcCCcEEEeCChHHHHHHHcC------
Confidence 599999997 778999999999886555 456676665432 444444 4899999999988765421
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccC--chHHHHHHHHHh-ccCe-EEEEecc
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMALRL-YAKH-RWCITGT 635 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN--~~Sk~~kal~~L-~a~~-RwlLTGT 635 (1236)
.+..-...++|||||.++-. ...+.-+.+..+ +... .++-|+|
T Consensus 234 ----------------~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saT 280 (519)
T KOG0331|consen 234 ----------------SLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSAT 280 (519)
T ss_pred ----------------CccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeee
Confidence 12333456899999998643 336666777777 3332 4555554
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.42 E-value=0.0043 Score=78.88 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=58.8
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCC---CCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRP---GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~---g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
+.++|++|.- +..|...++.+...- ...++.+..|...... ........+++|.|.......
T Consensus 223 ~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~------~~t~~k~~~Ilv~T~~L~l~~-------- 288 (675)
T PHA02653 223 RPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDEL------INTNPKPYGLVFSTHKLTLNK-------- 288 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHH------hhcccCCCCEEEEeCcccccc--------
Confidence 5799999985 556888888764421 1345555455432110 011222568888874321110
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhc-c-CeEEEEeccCC
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-A-KHRWCITGTPI 637 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a-~~RwlLTGTPi 637 (1236)
| -....||+||||..-...-.....++.+. . +..+++|+|+-
T Consensus 289 -------------------L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 289 -------------------L--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred -------------------c--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 1 24678999999997544433333333332 2 35799999974
No 70
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.35 E-value=0.0006 Score=84.17 Aligned_cols=106 Identities=11% Similarity=0.019 Sum_probs=67.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+||++|. +|..|+.+.|++.+ ..++.++||.-....... ........+.+|||+|...+-.
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~-~~~~~~~g~~~IVVGTrsalf~------------ 89 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ-AWRKVKNGEILVVIGTRSALFL------------ 89 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH-HHHHHHcCCCCEEECChHHHcC------------
Confidence 469999998 57899999999887 357888887643211000 0011123467899999887632
Q ss_pred hhhhhhcccCCCccccccccccceeecccccccc--CchHH------HHHHHHHhccCeEEEEeccCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAA------ATEMALRLYAKHRWCITGTPI 637 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK--N~~Sk------~~kal~~L~a~~RwlLTGTPi 637 (1236)
++. +.++||+||.|... ..... .+...........+++|+||.
T Consensus 90 ---------------p~~--~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 90 ---------------PFK--NLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred ---------------ccc--CCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 222 45899999999853 22221 122222345667889999997
No 71
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.19 E-value=0.0019 Score=84.53 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=72.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccch--hhhccCccEEEEeHHHHhhhcccCCCCcc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~--~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1236)
+.+|||+|. +|+.+....+... .++...+.|....... ..... ......++|+++|-+.+...-.
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~------- 568 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDS------- 568 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchH-------
Confidence 468999998 5665455555442 4666655554321100 00000 1122578999999998864200
Q ss_pred cchhhhhhcccCCCcccccc-ccccceeeccccccccCchH---HHHHH----HHHhccCeEEEEeccCCCCChhhhhhh
Q 000892 576 GDRRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMVESNAA---AATEM----ALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1236)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~-~i~w~rVILDEAH~IKN~~S---k~~ka----l~~L~a~~RwlLTGTPiqN~L~DL~sL 647 (1236)
..+.. ..+. .....+||+||||.+-.... ..++. ...+.....++||+|...+...|+...
T Consensus 569 ----ll~~L-------~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~ 637 (1195)
T PLN03137 569 ----LLRHL-------ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQA 637 (1195)
T ss_pred ----HHHHH-------HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHH
Confidence 00000 0011 12357899999999854321 11222 223456678999999988877787766
Q ss_pred hhcc
Q 000892 648 LRFL 651 (1236)
Q Consensus 648 L~FL 651 (1236)
|...
T Consensus 638 L~l~ 641 (1195)
T PLN03137 638 LGLV 641 (1195)
T ss_pred cCCC
Confidence 6543
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.16 E-value=0.0012 Score=77.80 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=67.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccc-c---ccc-c--------chhhhccCccEEEEeHHHHh
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSL-S---DTS-I--------MDISELVGADIVLTTYDVLK 564 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~-~---~~~-~--------~~~~~l~~~DVVITTYe~L~ 564 (1236)
+..++|+|. +++.|+.+.+..++. . ++..++|...... . ... . .........+|+++|.+.+.
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~ 106 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELFG--S-NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVL 106 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHhC--c-ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHH
Confidence 468999996 688999999999874 2 4555555322100 0 000 0 00011235679999999987
Q ss_pred hhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCch-HHHHHHHHHhc--cCeEEEEeccCC
Q 000892 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLY--AKHRWCITGTPI 637 (1236)
Q Consensus 565 ~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~--a~~RwlLTGTPi 637 (1236)
..+..... ...-.+..+.-.+||+||+|.+.... ......+..+. ....+++|+|+-
T Consensus 107 ~~~~~~~~----------------~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SATlp 166 (358)
T TIGR01587 107 KSVFGEFG----------------HYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSATLP 166 (358)
T ss_pred HHHhcccc----------------hHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCch
Confidence 65431000 00011333444789999999987532 22333333343 345789999964
No 73
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.08 E-value=0.0026 Score=65.27 Aligned_cols=101 Identities=19% Similarity=0.138 Sum_probs=56.5
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
+.+||+.|.-++. +|+.+... .+.+.+-.... ........-|-+++|.++..-+..
T Consensus 34 ~rvLvL~PTRvva---~em~~aL~--~~~~~~~t~~~----------~~~~~g~~~i~vMc~at~~~~~~~--------- 89 (148)
T PF07652_consen 34 LRVLVLAPTRVVA---EEMYEALK--GLPVRFHTNAR----------MRTHFGSSIIDVMCHATYGHFLLN--------- 89 (148)
T ss_dssp --EEEEESSHHHH---HHHHHHTT--TSSEEEESTTS----------S----SSSSEEEEEHHHHHHHHHT---------
T ss_pred CeEEEecccHHHH---HHHHHHHh--cCCcccCceee----------eccccCCCcccccccHHHHHHhcC---------
Confidence 6899999998774 45555554 34432221111 012234556888999998875421
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHH-hc---cCeEEEEeccCCC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALR-LY---AKHRWCITGTPIQ 638 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~-L~---a~~RwlLTGTPiq 638 (1236)
+....+|+.||+||+|.. ++.|.+++-... +. ....+.+|+||--
T Consensus 90 --------------p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 90 --------------PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp --------------SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred --------------cccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 234568999999999985 455555544332 21 2357899999964
No 74
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.92 E-value=0.012 Score=76.59 Aligned_cols=155 Identities=13% Similarity=0.091 Sum_probs=80.7
Q ss_pred CcEEEEeCCc-hHHHHHHHHH-----hcCC----CCCCeEEEEcCCCcccccccccc-h---hhhc-----cCccEEEEe
Q 000892 499 GATLIVCPAP-ILAQWDAEIT-----RHTR----PGSLKTCIYEGARNSSLSDTSIM-D---ISEL-----VGADIVLTT 559 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~-----k~~~----~g~L~V~vy~G~~~~~~~~~~~~-~---~~~l-----~~~DVVITT 559 (1236)
..+|||||.. +.....+=+. .|+. ...+++.+|...++........+ . .... ..-.|+|+|
T Consensus 90 ~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~n 169 (986)
T PRK15483 90 FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLIN 169 (986)
T ss_pred cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEe
Confidence 4799999985 4444433222 3332 22477888886542111000000 1 1111 135799999
Q ss_pred HHHHhhhcccCCCCcccchhhhhhcccCCCcccccccc--ccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCC
Q 000892 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRI--FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1236)
Q Consensus 560 Ye~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i--~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPi 637 (1236)
-+.|.++... ....+.... ... ..|+..+ .=-.||+||+|++... .+..+++..++..+.+--|+|--
T Consensus 170 iqa~n~~~~~---~~~~D~~l~--~g~----~~p~~~i~~~~PivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 170 AGMLNSASMT---RDDYDQTLL--GGF----TSPVDALAATRPVVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred hHHhcccccc---cchhhhhhc--cCC----CChHHHHHhCCCEEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecC
Confidence 9999764210 000000000 000 0111111 1226899999999653 45678899999999999999975
Q ss_pred C-------CC--hhhhhhhhhccCCCCCCChhHHHHHhcC
Q 000892 638 Q-------RK--LDDLYGLLRFLKSSPFSISRWWIEVIRD 668 (1236)
Q Consensus 638 q-------N~--L~DL~sLL~FL~p~~f~~~~~F~~~~~~ 668 (1236)
. |. ..|.|+++-=|+ ....|...+..
T Consensus 240 ~~~~~~g~~~~~~~d~~NlvY~Ld-----avdAyn~~LVK 274 (986)
T PRK15483 240 DITEGKGKNKCTRKDYYNLQFDLN-----AVDSFNDGLVK 274 (986)
T ss_pred CccccccccccccccccCceeecC-----HHHHHHhCCcc
Confidence 4 11 224566655444 34455544433
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.83 E-value=0.0039 Score=79.36 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=64.7
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCC-CcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGA-RNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~-~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.++||+|+. |..||.+++..+...-++++.+..+. ...... ..........||+++|.+.|..++-.+.-..
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~---~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~--- 186 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYD---ANEKRKIYNSDIVYTTNSALGFDYLIDNLAS--- 186 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccC---HHHHHHhCCCCEEEECchhhhhhHHHHHhhc---
Confidence 589999997 66777777655443225777654332 111110 0011222468999999999965432110000
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhh
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL 648 (1236)
.+ ..+..-...++|+||||.+--.. ++.-+++||.|-.. .++|..+
T Consensus 187 ------~~------~~~~~r~l~~~IVDEaDsILiDe-----------artpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 187 ------NK------EGKFLRPFNYVIVDEVDSVLLDS-----------AQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred ------ch------hhcccccCcEEEEecHhhHhhcc-----------CcCCeeeeCCCccc--hHHHHHH
Confidence 00 01122356789999999873222 44568888876533 3466554
No 76
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.72 E-value=0.0071 Score=78.87 Aligned_cols=113 Identities=20% Similarity=0.204 Sum_probs=72.5
Q ss_pred CcEEEEeCCchHH-HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~SLl~-QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+-+-|+||++|+. |=.+-|..-+.+-.++|-+..--.... ........-..++.||||=|+..|.+++..
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~k-E~~~il~~la~G~vDIvIGTHrLL~kdv~F-------- 714 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAK-EQKEILKGLAEGKVDIVIGTHRLLSKDVKF-------- 714 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHH-HHHHHHHHHhcCCccEEEechHhhCCCcEE--------
Confidence 4588999999874 555555554432234554443322111 000111223346799999999999987642
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhcc-CeEEEEeccCCCCChh
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLD 642 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a-~~RwlLTGTPiqN~L~ 642 (1236)
-+-.+||+||=|+..= +.-..++.|++ .+.+-||+|||+..|.
T Consensus 715 -------------------kdLGLlIIDEEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 715 -------------------KDLGLLIIDEEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred -------------------ecCCeEEEechhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 1346899999999853 34466777764 6789999999999774
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.71 E-value=0.0052 Score=78.43 Aligned_cols=136 Identities=14% Similarity=0.183 Sum_probs=83.6
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.++-|+|. +|..--.+-+.+-+.+-+++|.-+.|.... ...+..+.+|+|||-+.+----.+. .++
T Consensus 166 KiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql--------~~tei~~tqiiVTTPEKwDvvTRk~----~~d- 232 (1230)
T KOG0952|consen 166 KIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQL--------TKTEIADTQIIVTTPEKWDVVTRKS----VGD- 232 (1230)
T ss_pred eEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchh--------hHHHHHhcCEEEecccceeeeeeee----ccc-
Confidence 68888996 454444444444333347999999998654 3455888999999987542110000 011
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCch-----HHHHHHHHH----hccCeEEEEeccCCCCChhhhhhhhh
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-----AAATEMALR----LYAKHRWCITGTPIQRKLDDLYGLLR 649 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-----Sk~~kal~~----L~a~~RwlLTGTPiqN~L~DL~sLL~ 649 (1236)
+.|. -.-.+||+||.|.+.... +..++.++. ...-+-++||+|- + .+-.+-+
T Consensus 233 -------------~~l~-~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl-P----N~eDvA~ 293 (1230)
T KOG0952|consen 233 -------------SALF-SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL-P----NYEDVAR 293 (1230)
T ss_pred -------------hhhh-hheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC-C----CHHHHHH
Confidence 0111 124589999999998876 444555533 2445678999993 2 3444568
Q ss_pred ccCCCCCCChhHHHHHhc
Q 000892 650 FLKSSPFSISRWWIEVIR 667 (1236)
Q Consensus 650 FL~p~~f~~~~~F~~~~~ 667 (1236)
||+..+......|...|.
T Consensus 294 fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 294 FLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred HhcCCCccceeeeccccc
Confidence 888877666666665554
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=96.71 E-value=0.0043 Score=83.46 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=55.8
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCe---EEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLK---TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~---V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
..+|||+|.. |..|+.+++.+++..-.++ +..|+|....... ........-..+||||+|...|...+.
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~-~~~~~~l~~~~~dIlV~Tp~rL~~~~~------ 194 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEK-KEFMERIENGDFDILITTTMFLSKNYD------ 194 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHHHHHH------
Confidence 4689999985 6789999999987532333 3357775322100 000001112358999999999876432
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccccccccC
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1236)
.+.. +++++|+||||++-.
T Consensus 195 ------------------~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 195 ------------------ELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred ------------------HhcC-CCCEEEEeChHhhhh
Confidence 1222 789999999998754
No 79
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.46 E-value=0.0066 Score=72.16 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=69.1
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
+-..|||+|.- |..|=.++|.+|++..++.|+...|.+..................||+|+|-+.|..++...
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~------ 288 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT------ 288 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC------
Confidence 34689999986 55799999999999888999999998654322222222233346799999999999877531
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1236)
..+.--+-.++|+|||.++-+..
T Consensus 289 ---------------k~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 289 ---------------KSFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred ---------------CCcchhhceEEEechHHHHHHHH
Confidence 12444456689999999987643
No 80
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.33 E-value=0.03 Score=72.26 Aligned_cols=38 Identities=18% Similarity=-0.057 Sum_probs=23.7
Q ss_pred cceeeccccccccCchHHHHHH-HHHh--cc----CeEEEEeccCC
Q 000892 599 WWRICLDEAQMVESNAAAATEM-ALRL--YA----KHRWCITGTPI 637 (1236)
Q Consensus 599 w~rVILDEAH~IKN~~Sk~~ka-l~~L--~a----~~RwlLTGTPi 637 (1236)
-.++|||||| +...-....+. +..+ .. ...+++|+|+-
T Consensus 172 v~~LVLDEAD-Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 172 DALIVHDEAH-LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred ceEEEEehhh-hccccHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 5589999999 44333333333 3332 22 36899999984
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.08 E-value=0.023 Score=73.01 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=77.6
Q ss_pred cEEEEeCCchHHH-HHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAPILAQ-WDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~SLl~Q-W~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.+|-|.|.-.+.+ =..-+..|...-++++.+-||.......+ ......+||+|||-++|.--+...
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~-----r~~~~PPdILiTTPEsL~lll~~~-------- 141 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQ-----KMLKNPPHILITTPESLAILLNSP-------- 141 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhh-----hccCCCCcEEEeChhHHHHHhcCH--------
Confidence 4788888754432 22223332222268888999976543221 222345899999999998765420
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhc----cCeEEEEeccCCCCChhhhhhhhhccC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~----a~~RwlLTGTPiqN~L~DL~sLL~FL~ 652 (1236)
+ ....|..+. .||+||.|.+.+.+ ++.+-.+.+|. --.|++||+| +.+..-+.+||.
T Consensus 142 ~----------~r~~l~~vr--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSAT-----V~~~~~varfL~ 204 (814)
T COG1201 142 K----------FRELLRDVR--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSAT-----VGPPEEVAKFLV 204 (814)
T ss_pred H----------HHHHhcCCc--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhc-----cCCHHHHHHHhc
Confidence 0 012244443 59999999998655 66666666553 3679999999 445556667776
Q ss_pred CC
Q 000892 653 SS 654 (1236)
Q Consensus 653 p~ 654 (1236)
..
T Consensus 205 g~ 206 (814)
T COG1201 205 GF 206 (814)
T ss_pred CC
Confidence 54
No 82
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=95.84 E-value=0.0071 Score=69.77 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=92.8
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHccCCC
Q 000892 708 ECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQ 787 (1236)
Q Consensus 708 e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~l~~~~~~~iL~~L~rLRQiC~HP~ 787 (1236)
++.+.++|+..|+++|+.+.......+.+.++... .....++.........+-..+.+|+.+|+||+
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~ 71 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFCETND-------------SSESIDSLLDESLVQSMELLIENLRLVANHPS 71 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTT-------------T--HHHH-------HHHHHHHHHHHHHHH-GG
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccC-------------ccccccchhhhhhHHHHHHHHHHHHHhccCcc
Confidence 57789999999999999988755444433332100 00000000111223566777889999999999
Q ss_pred CCCcccccccCCCCCH----------HHHHHHHHHHHHH-hhhhhccchhhhhhhHhhHHHHHHhHhHHHHHH-------
Q 000892 788 VGSSGLRSLQQSPLSM----------DEILMVLIGKTKI-EGEEALRKLVMALNGLAGIALIEKNLSQAVSLY------- 849 (1236)
Q Consensus 788 L~~~~~~~l~~~~~t~----------eelL~~Ll~~~~~-e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y------- 849 (1236)
|.-.-....+-..+.+ -.+|..|++.+.. .-.+...+++|.++....+++||..+-.....|
T Consensus 72 LlvdH~mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~ 151 (297)
T PF11496_consen 72 LLVDHYMPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGES 151 (297)
T ss_dssp GT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--
T ss_pred ccccccCccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCC
Confidence 8543332111111111 2355666665522 112334789999999999999998664432222
Q ss_pred --HHHHHHH-------------HHHH---hh-----ccCCCCc------------ceeEEecCCcCCcchhhhhh-hhhc
Q 000892 850 --KEAMAVV-------------EEHS---ED-----FRLDPLL------------NIHLHHNLTEILPMVANCAT-ELSQ 893 (1236)
Q Consensus 850 --~~~l~~~-------------~~~~---~~-----fr~D~~~------------~lh~~~Nl~dwnp~~d~QA~-R~hR 893 (1236)
.+..... .... .. +..+.+. .+.+-++. .+++..+.... |.+-
T Consensus 152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~-~~d~~~p~i~~lR~~~ 230 (297)
T PF11496_consen 152 LYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDP-SFDTSLPSIEQLRTQN 230 (297)
T ss_dssp S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SS-T--TTSHHHHHHH---
T ss_pred CcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecC-CCCCCChHHHHHHhhc
Confidence 1111100 0000 00 0011110 12333333 36666655444 5544
Q ss_pred cCCCCceEEEEcccCCcccccchhHhhh
Q 000892 894 NEQHFPGCSEKAFKIHSIETCDENARKC 921 (1236)
Q Consensus 894 iGQ~k~V~VyRlit~~Tiee~i~~~~k~ 921 (1236)
-.+ +.+=|.|||..+|||-.+++..+.
T Consensus 231 ~~~-~~~PiirLv~~nSiEHi~L~~~~~ 257 (297)
T PF11496_consen 231 RRN-RLCPIIRLVPSNSIEHIELCFPKS 257 (297)
T ss_dssp -----S--EEEEEETTSHHHHHHHHTTT
T ss_pred CCC-CCCcEEEEeeCCCHHHHHHHccCc
Confidence 333 789999999999999998876664
No 83
>PRK14701 reverse gyrase; Provisional
Probab=95.71 E-value=0.024 Score=78.25 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=55.9
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCC--CCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPG--SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g--~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
.+|||+|.. |+.|..+.+..+...- .+++..++|....... ..........++||+|+|.+.|...+.
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~-~~~~~~l~~g~~dILV~TPgrL~~~~~-------- 194 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEK-EEFLERIENGDFDILVTTAQFLARNFP-------- 194 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECCchhHHhHH--------
Confidence 689999985 7789999999876421 3566778776432100 000011112368999999987765331
Q ss_pred chhhhhhcccCCCccccccccccceeecccccccc
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1236)
.+....++++|+||||.+-
T Consensus 195 ----------------~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 195 ----------------EMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred ----------------HHhhCCCCEEEEECceecc
Confidence 0222568899999999873
No 84
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.46 E-value=0.045 Score=70.55 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=55.5
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCc-ccccccccchhhhccCccEEEEeHHHHhhhcccCCCC
Q 000892 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1236)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~-~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1236)
+.++||+|+..+. .|...+.++. ++++.++.|... .. ........||++.|...|.-|+-.+.-.
T Consensus 120 ~~v~VvTpt~~LA~qd~e~~~~l~~~l---Gl~v~~i~g~~~~~~-------~r~~~y~~dIvygT~~~l~fDyLrd~~~ 189 (790)
T PRK09200 120 KGVHLITVNDYLAKRDAEEMGQVYEFL---GLTVGLNFSDIDDAS-------EKKAIYEADIIYTTNSELGFDYLRDNLA 189 (790)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCcHH-------HHHHhcCCCEEEECCccccchhHHhccc
Confidence 4689999998663 6888888887 699988887543 21 2223355899999976664332111000
Q ss_pred cccchhhhhhcccCCCccccccccccceeecccccccc
Q 000892 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1236)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1236)
.. +.....-...++|+|||+.+-
T Consensus 190 ~~---------------~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 190 DS---------------KEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred cc---------------hhhhcccccceEEEeccccce
Confidence 00 011233467889999999874
No 85
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.10 E-value=0.1 Score=71.47 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=68.6
Q ss_pred CcEEEEeCCchH-HHHHHHHHh-----------cC-CCCCCeEEEEcCCCcccccccccchhhhc-cCccEEEEeHHHHh
Q 000892 499 GATLIVCPAPIL-AQWDAEITR-----------HT-RPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLK 564 (1236)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k-----------~~-~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~ 564 (1236)
..+|+|+|.--+ .|=.++++. +. ....++|.+++|...... ....+ ...||+|||.+.|.
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~e------R~rll~~ppdILVTTPEsL~ 111 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQE------RSKLTRNPPDILITTPESLY 111 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHH------HHHHhcCCCCEEEecHHHHH
Confidence 468999998644 333333321 11 112588999999754321 11111 35799999999987
Q ss_pred hhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhc-----cCeEEEEeccCC
Q 000892 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-----AKHRWCITGTPI 637 (1236)
Q Consensus 565 ~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-----a~~RwlLTGTPi 637 (1236)
.-+... . ...|. +-.+||+||+|.+.+.+ +.....+.+|. ...+|++|+|=
T Consensus 112 ~LLtsk------~-------------r~~L~--~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI- 169 (1490)
T PRK09751 112 LMLTSR------A-------------RETLR--GVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATV- 169 (1490)
T ss_pred HHHhhh------h-------------hhhhc--cCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeC-
Confidence 643210 0 01133 34579999999997542 44444444432 35799999995
Q ss_pred CCChhhhh
Q 000892 638 QRKLDDLY 645 (1236)
Q Consensus 638 qN~L~DL~ 645 (1236)
++++++-
T Consensus 170 -~n~eevA 176 (1490)
T PRK09751 170 -RSASDVA 176 (1490)
T ss_pred -CCHHHHH
Confidence 2355544
No 86
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.78 E-value=0.44 Score=51.73 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=22.2
Q ss_pred ccceeeccccccccCchHHHHHHHHH-hccCeEEEEeccCCC
Q 000892 598 FWWRICLDEAQMVESNAAAATEMALR-LYAKHRWCITGTPIQ 638 (1236)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~-L~a~~RwlLTGTPiq 638 (1236)
.|+.||+|||-.+.-+. ++.. ..+..+++|-|=|-|
T Consensus 192 ~~d~vIvDEAsq~~e~~-----~l~~l~~~~~~~vlvGD~~Q 228 (236)
T PF13086_consen 192 KFDVVIVDEASQITEPE-----ALIPLSRAPKRIVLVGDPKQ 228 (236)
T ss_dssp --SEEEETTGGGS-HHH-----HHHHHTTTBSEEEEEE-TTS
T ss_pred cCCEEEEeCCCCcchHH-----HHHHHHHhCCEEEEECChhh
Confidence 79999999998764322 2222 334489999998766
No 87
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=94.76 E-value=0.079 Score=67.58 Aligned_cols=98 Identities=8% Similarity=-0.030 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHH---HHHHHHHHHHHHhhcc--------------
Q 000892 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEAMAVVEEHSEDFR-------------- 864 (1236)
Q Consensus 802 t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~---y~~~l~~~~~~~~~fr-------------- 864 (1236)
+..+-...+++.+.. ..+.++.+|||++.....+.+...+...... +...-..++..+..|.
T Consensus 386 t~~~k~~ai~~~i~~-~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATnmAg 464 (745)
T TIGR00963 386 TEEEKWKAVVDEIKE-RHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAG 464 (745)
T ss_pred CHHHHHHHHHHHHHH-HHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEEEecccc
Confidence 455556666665433 3456799999999999999999888765321 1111222333332222
Q ss_pred --CCCCc-------ceeEEecCCcCCcchhhhhh-hhhccCCCCce
Q 000892 865 --LDPLL-------NIHLHHNLTEILPMVANCAT-ELSQNEQHFPG 900 (1236)
Q Consensus 865 --~D~~~-------~lh~~~Nl~dwnp~~d~QA~-R~hRiGQ~k~V 900 (1236)
+|.-. -+|+...-..=++..++|.. |++|-|++=..
T Consensus 465 RGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 465 RGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred CCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 22212 33666555557778999999 99999986433
No 88
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.07 E-value=0.18 Score=67.10 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=65.8
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
.+++|+=-. |-.|=.++|..+.. ...... ..... ......-.-..-.|||||-..|.......
T Consensus 305 ~v~fvvDR~dLd~Q~~~~f~~~~~--~~~~~~--~~~s~----~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~-------- 368 (962)
T COG0610 305 KVLFVVDRKDLDDQTSDEFQSFGK--VAFNDP--KAEST----SELKELLEDGKGKIIVTTIQKFNKAVKED-------- 368 (962)
T ss_pred eEEEEechHHHHHHHHHHHHHHHH--hhhhcc--cccCH----HHHHHHHhcCCCcEEEEEecccchhhhcc--------
Confidence 455566544 56799999999864 121111 11110 00001111124579999999988764321
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHH-HhccCeEEEEeccCCCCChhh
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDD 643 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~-~L~a~~RwlLTGTPiqN~L~D 643 (1236)
......-....||+||||+--.+. .++.++ .++.-.-++.|||||...-.+
T Consensus 369 ------------~~~~~~~~~ivvI~DEaHRSQ~G~--~~~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 369 ------------ELELLKRKNVVVIIDEAHRSQYGE--LAKLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred ------------cccccCCCcEEEEEechhhccccH--HHHHHHHHhccceEEEeeCCcccccccc
Confidence 012345567789999999864433 333333 355677889999999765443
No 89
>PRK09694 helicase Cas3; Provisional
Probab=93.96 E-value=0.26 Score=64.65 Aligned_cols=76 Identities=13% Similarity=0.026 Sum_probs=43.1
Q ss_pred ccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCchHHH-HHHHHHhc--cCeE
Q 000892 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA-TEMALRLY--AKHR 629 (1236)
Q Consensus 553 ~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~-~kal~~L~--a~~R 629 (1236)
.+|+|+|.+.+-.-+-... -...| +..+.=..||+||+|.+-...+.. ...+..+. ....
T Consensus 411 api~V~TiDQlL~a~l~~k------h~~lR-----------~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~v 473 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVK------HRFIR-----------GFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSV 473 (878)
T ss_pred CCEEEcCHHHHHHHHHccc------hHHHH-----------HHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcE
Confidence 6899999988775432100 00001 112334589999999985443333 33333332 3558
Q ss_pred EEEeccCCCCChhhhh
Q 000892 630 WCITGTPIQRKLDDLY 645 (1236)
Q Consensus 630 wlLTGTPiqN~L~DL~ 645 (1236)
++||+|+-..-..+|.
T Consensus 474 IllSATLP~~~r~~L~ 489 (878)
T PRK09694 474 ILLSATLPATLKQKLL 489 (878)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 9999998654444443
No 90
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.71 E-value=0.41 Score=63.33 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=28.4
Q ss_pred ccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccC
Q 000892 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1236)
Q Consensus 550 l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1236)
...+|||||+|..|-.+..... ..| -....+|+||||++..
T Consensus 414 a~~AdivItNHa~L~~~~~~~~--------------------~il--p~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNP--------------------ELF--PSFRDLIIDEAHHLPD 454 (850)
T ss_pred HhcCCEEEecHHHHHHHhhccc--------------------ccC--CCCCEEEEECcchHHH
Confidence 4568899999999988653100 012 2346899999999864
No 91
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.42 E-value=0.36 Score=56.54 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=79.8
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
..||++|.- |-.|-...|+.....-++++.+.-|..... .....-..+.+|+|.|-+.|...+....
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~-----~q~~~L~kkPhilVaTPGrL~dhl~~Tk------- 198 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM-----LQANQLSKKPHILVATPGRLWDHLENTK------- 198 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH-----HHHHHhhcCCCEEEeCcHHHHHHHHhcc-------
Confidence 479999997 556878888888665578998888865432 1123334568899999999988764211
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhccCeE-EEEeccCCCCChhhh
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHR-WCITGTPIQRKLDDL 644 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~~R-wlLTGTPiqN~L~DL 644 (1236)
.+..-.-.++|+|||.++-|.. -..-+.++.++..++ ++.|+|-. .++..|
T Consensus 199 --------------gf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt-~kv~kL 252 (476)
T KOG0330|consen 199 --------------GFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMT-KKVRKL 252 (476)
T ss_pred --------------CccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecc-hhhHHH
Confidence 1222234568999999998865 566777777876654 56677743 334443
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=93.34 E-value=2.1 Score=55.27 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=33.0
Q ss_pred eEEecCCcCCcchhhhhh-hhhccCCCCceEEEEcccCCcccc
Q 000892 872 HLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIET 913 (1236)
Q Consensus 872 h~~~Nl~dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee 913 (1236)
|.+-+..+.+|----|-. ||+|-|=....+|. +++++.+++
T Consensus 685 hDG~efR~L~PGEytQMAGRAGRRGlD~tGTVi-i~~~~~vp~ 726 (1248)
T KOG0947|consen 685 HDGNEFRELLPGEYTQMAGRAGRRGLDETGTVI-IMCKDSVPS 726 (1248)
T ss_pred ccCcceeecCChhHHhhhccccccccCcCceEE-EEecCCCCC
Confidence 667777799998888877 99999999888888 666666443
No 93
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=92.75 E-value=0.52 Score=61.40 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=64.6
Q ss_pred cEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcc
Q 000892 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1236)
Q Consensus 500 ~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1236)
+++||+|+.-+ .+|...+.+++ ++++....|...... .... -..|||+.|-..|.-++-....-.
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l---GLsV~~i~GG~~~~e------q~~~-y~~DIVygTPgRLgfDyLrd~~~~- 205 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL---GLTTGVLVSGSPLEK------RKEI-YQCDVVYGTASEFGFDYLRDNSIA- 205 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHHH------HHHH-cCCCEEEECCChhHHHHhhCCCCC-
Confidence 47899998644 47888888887 588876665432210 1112 258999999888744432211000
Q ss_pred cchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhh
Q 000892 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1236)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL 648 (1236)
..........+.++|||||-.+-- -.|+--+++||.+-.. .++|..+
T Consensus 206 -------------~~~~~~vqr~~~~~IIDEADsmLi-----------DEArTPLIISg~~~~~--~~~Y~~~ 252 (970)
T PRK12899 206 -------------TRKEEQVGRGFYFAIIDEVDSILI-----------DEARTPLIISGPGEKH--NPVYFEL 252 (970)
T ss_pred -------------cCHHHhhcccccEEEEechhhhhh-----------hccCCceeeeCCCccc--cHHHHHH
Confidence 000112345788999999987531 2344557777766433 4444433
No 94
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.47 E-value=0.67 Score=57.83 Aligned_cols=110 Identities=20% Similarity=0.199 Sum_probs=74.3
Q ss_pred EEEEeCCc-hHHHHHHHHHhcCCCC-CCeEEEEcCCCcccccccccchhhhcc-CccEEEEeHHHHhhhcccCCCCcccc
Q 000892 501 TLIVCPAP-ILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 501 tLIV~P~S-Ll~QW~~Ei~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.||++|.- |..|=.+++.++.... .+++..+.|...... +...+. ..||||.|-..+...+...
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~------q~~~l~~~~~ivVaTPGRllD~i~~~------- 168 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK------QIEALKRGVDIVVATPGRLLDLIKRG------- 168 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH------HHHHHhcCCCEEEECccHHHHHHHcC-------
Confidence 89999996 6679999998887643 577666666533211 222333 3999999999988654321
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhcc-CeEEEEeccCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPIQ 638 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPiq 638 (1236)
.|..-+-..+|+|||-++-+.. -.+...+..++. ...++.|+|--.
T Consensus 169 ---------------~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~ 217 (513)
T COG0513 169 ---------------KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD 217 (513)
T ss_pred ---------------CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 2444456789999999987653 445555556654 667888888654
No 95
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=92.08 E-value=0.82 Score=59.53 Aligned_cols=131 Identities=15% Similarity=0.007 Sum_probs=66.1
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
...+.|.|.. ++.+=.+.+..+...+......+||......... ... ..-+.++++++....+-..... ..
T Consensus 247 ~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~----~~~--~~~~~~~~~ds~~~~~~~~~~~--~~ 318 (733)
T COG1203 247 SRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLE----PDQ--DILLTLTTNDSYKKLLLALIVV--TP 318 (733)
T ss_pred ceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhc----ccc--ccceeEEecccccceecccccc--CH
Confidence 4567777764 5677788888776522222222355433221100 000 1125666666655433211100 00
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCc-hH-HHHHHHHHhc--cCeEEEEeccCCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AA-AATEMALRLY--AKHRWCITGTPIQ 638 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~S-k~~kal~~L~--a~~RwlLTGTPiq 638 (1236)
-....+...+..... +..+.-..||+||+|.+-.. .+ ....++..+. ....+++|||+-+
T Consensus 319 ~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 319 IQILIFSVKGFKFEF-LALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred hHhhhhhccccchHH-HHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 001111112222233 66677889999999998766 32 2333333343 6778999999864
No 96
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=91.99 E-value=0.53 Score=61.71 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.6
Q ss_pred hhhhh-hhhccCCCCceEEEEcccCCc
Q 000892 885 ANCAT-ELSQNEQHFPGCSEKAFKIHS 910 (1236)
Q Consensus 885 d~QA~-R~hRiGQ~k~V~VyRlit~~T 910 (1236)
..+|. |++|-|-.++...|||+|+..
T Consensus 311 kasa~QR~GRAGR~~~G~cyrL~t~~~ 337 (819)
T TIGR01970 311 QASATQRAGRAGRLEPGVCYRLWSEEQ 337 (819)
T ss_pred HHHHHhhhhhcCCCCCCEEEEeCCHHH
Confidence 34566 999999999999999999764
No 97
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.86 E-value=0.32 Score=62.98 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=59.7
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCC-CeEEE-EcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGS-LKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~-L~V~v-y~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1236)
+..+||+|++ |+.|=.+-|.++..... +++.+ ||+.-..... ......-..++|||+|||-..|.+.+.
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ek-ee~le~i~~gdfdIlitTs~FL~k~~e------- 197 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEK-EEALERIESGDFDILITTSQFLSKRFE------- 197 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHH-HHHHHHHhcCCccEEEEeHHHHHhhHH-------
Confidence 5789999986 56899999999885333 55444 8987332110 111223344679999999999998754
Q ss_pred cchhhhhhcccCCCccccccccccceeecccccc
Q 000892 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM 609 (1236)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~ 609 (1236)
.|.+.+|+.|++|-+..
T Consensus 198 -----------------~L~~~kFdfifVDDVDA 214 (1187)
T COG1110 198 -----------------ELSKLKFDFIFVDDVDA 214 (1187)
T ss_pred -----------------HhcccCCCEEEEccHHH
Confidence 36677888888887775
No 98
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=91.72 E-value=0.059 Score=45.35 Aligned_cols=30 Identities=40% Similarity=1.035 Sum_probs=24.1
Q ss_pred hcccccccccccccccccccccccccccccCcCC
Q 000892 417 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1236)
Q Consensus 417 ic~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~ 450 (1236)
+|+. ....+.+++|+.|+.|.|..|++...
T Consensus 4 vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 4 VCGQ----SDDDGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp TTTS----SCTTSSEEEBSTTSCEEETTTSTSSH
T ss_pred CCCC----cCCCCCeEEcCCCChhhCcccCCCCh
Confidence 5666 23367899999999999999998654
No 99
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.71 E-value=0.53 Score=59.15 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=84.3
Q ss_pred cCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCcccccccccc------ceeeccccccccC-------chHHH
Q 000892 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFW------WRICLDEAQMVES-------NAAAA 617 (1236)
Q Consensus 551 ~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w------~rVILDEAH~IKN-------~~Sk~ 617 (1236)
-+-.|+..||..|-.+... .+.+...|+. +-+.| .+||+||.|+.|| ..|++
T Consensus 367 ~krGViFaTYtaLIGEs~~-----~~~kyrtR~r----------QllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKt 431 (1300)
T KOG1513|consen 367 TKRGVIFATYTALIGESQG-----KGGKYRTRFR----------QLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKT 431 (1300)
T ss_pred ccceeEEEeeHhhhhhccc-----cCchHHHHHH----------HHHHHhhhccceeEEehhhhhhcccccccCCCcCcc
Confidence 3457999999999887432 1111111111 11233 3789999999999 34677
Q ss_pred HHHHHHh----ccCeEEEEeccCCCCChhhhhhhhhccCCCCCC------ChhHHHHHhcCCCcCCccchHHH--HHHHH
Q 000892 618 TEMALRL----YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS------ISRWWIEVIRDPYENGDVGAMEF--THKFF 685 (1236)
Q Consensus 618 ~kal~~L----~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~------~~~~F~~~~~~pi~~g~~~~~~~--L~~lL 685 (1236)
.+++..| +--+.+-.++|-- .|=-++....+.+.|| ++..|...+. +....+++- +--.+
T Consensus 432 G~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~RLGlWGegtaf~eF~eFi~AvE----kRGvGAMEIVAMDMK~ 503 (1300)
T KOG1513|consen 432 GKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVRLGLWGEGTAFPEFEEFIHAVE----KRGVGAMEIVAMDMKL 503 (1300)
T ss_pred cHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhhhccccCCCcCccHHHHHHHHH----hcCCceeeeeehhhhh
Confidence 7777665 3445555666643 2333344444555544 4444444332 222222210 11112
Q ss_pred HhhhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 000892 686 KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHET 729 (1236)
Q Consensus 686 ~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~ 729 (1236)
+...+ +.+|..-.....+..|+||++=++.|+.-.+-
T Consensus 504 rGmYi-------ARQLSFkgVsFrieEv~ls~eF~k~Yn~a~~L 540 (1300)
T KOG1513|consen 504 RGMYI-------ARQLSFKGVSFRIEEVPLSKEFRKVYNRAAEL 540 (1300)
T ss_pred hhhhh-------hhhccccCceEEEEecccCHHHHHHHHHHHHH
Confidence 22222 22566777788999999999999999976543
No 100
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=91.65 E-value=0.84 Score=58.03 Aligned_cols=101 Identities=18% Similarity=0.059 Sum_probs=57.4
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
..++||+|+--+. +|...+.++. .+++....|..... ........||++.|-..|.-|+-.+.-..
T Consensus 145 ~~v~VvTptreLA~qdae~~~~l~~~l---Glsv~~i~gg~~~~-------~r~~~y~~dIvygT~~e~~FDyLrd~~~~ 214 (656)
T PRK12898 145 LPVHVITVNDYLAERDAELMRPLYEAL---GLTVGCVVEDQSPD-------ERRAAYGADITYCTNKELVFDYLRDRLAL 214 (656)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHhhc---CCEEEEEeCCCCHH-------HHHHHcCCCEEEECCCchhhhhccccccc
Confidence 4689999998663 6777777776 58887776653211 22233467999999777766554322111
Q ss_pred cc--chh---hhhhcccCCCccccccccccceeeccccccc
Q 000892 575 EG--DRR---FMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1236)
Q Consensus 575 ~~--~~~---~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1236)
.+ +.. ..++...+. ....+..-.++++|+||+..+
T Consensus 215 ~~~~~~~~~~~~~l~~~~~-~~~~~v~r~~~~aIvDEvDSi 254 (656)
T PRK12898 215 GQRASDARLALESLHGRSS-RSTQLLLRGLHFAIVDEADSV 254 (656)
T ss_pred cccccchhhhhhhhccccC-chhhhcccccceeEeecccce
Confidence 00 000 000100000 112234457889999999875
No 101
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=91.60 E-value=0.88 Score=57.85 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=29.1
Q ss_pred ccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCch
Q 000892 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1236)
Q Consensus 550 l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1236)
...+|||||++..|..+.... . ..| -..+.||+||||.+....
T Consensus 180 a~~AdivItNHalL~~~~~~~----------------~----~iL--P~~~~lIiDEAH~L~d~A 222 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDK----------------W----GLL--PQPDILIVDEAHLFEQNI 222 (636)
T ss_pred cccCCEEEECHHHHHHHhhhh----------------c----CCC--CCCCEEEEeCCcchHHHH
Confidence 467799999999888643110 0 112 237899999999996543
No 102
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=91.43 E-value=0.74 Score=60.39 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=22.1
Q ss_pred hhhh-hhhccCCCCceEEEEcccCCcc
Q 000892 886 NCAT-ELSQNEQHFPGCSEKAFKIHSI 911 (1236)
Q Consensus 886 ~QA~-R~hRiGQ~k~V~VyRlit~~Ti 911 (1236)
.+|. |++|-|...+...|||.|+...
T Consensus 315 asa~QR~GRaGR~~~G~cyrL~t~~~~ 341 (812)
T PRK11664 315 ASMTQRAGRAGRLEPGICLHLYSKEQA 341 (812)
T ss_pred hhhhhhccccCCCCCcEEEEecCHHHH
Confidence 3566 9999999999999999998754
No 103
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=90.68 E-value=0.35 Score=60.36 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=86.0
Q ss_pred CCcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
.|.||||.|. ||+..=.+.+... ++++...++.-... .............++++..+-+.+....-
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~-e~~~v~~~l~~g~~klLyisPErl~~~~f-------- 123 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSRE-ERQQVLNQLKSGQLKLLYISPERLMSPRF-------- 123 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHH-HHHHHHHHHhcCceeEEEECchhhcChHH--------
Confidence 5899999997 6766556666654 46666666542211 00111122334568999999999887521
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch-------HHHHHHHHHhccCeEEEEeccCCCCChhhhhhhhh
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~ 649 (1236)
...|......++++||||.|-... .........++-.-+++||+|=-+.-..|+-..|.
T Consensus 124 --------------~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~ 189 (590)
T COG0514 124 --------------LELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLG 189 (590)
T ss_pred --------------HHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhc
Confidence 124667888899999999986542 33344444455557999999988888888888877
Q ss_pred ccCCCC
Q 000892 650 FLKSSP 655 (1236)
Q Consensus 650 FL~p~~ 655 (1236)
.=.+..
T Consensus 190 l~~~~~ 195 (590)
T COG0514 190 LQDANI 195 (590)
T ss_pred CCCcce
Confidence 655533
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=90.19 E-value=0.69 Score=60.24 Aligned_cols=101 Identities=21% Similarity=0.126 Sum_probs=61.0
Q ss_pred cEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcc
Q 000892 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1236)
Q Consensus 500 ~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1236)
.++||+|+--+ .+|...+.+++ ++++.+..|..... .....-..||++.|-..|.-|+-.+....
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~l---GLtv~~i~gg~~~~-------~r~~~y~~dIvygT~grlgfDyLrd~~~~- 193 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFL---GLTVGVIYPDMSHK-------EKQEAYKADIVYGTNNEYGFDYLRDNMAF- 193 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccc---CceEEEEeCCCCHH-------HHHHHhCCCEEEECChhhhHHHHhcCCcc-
Confidence 58999999755 36888888887 58888777653221 11222357999999888754432111000
Q ss_pred cchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccC
Q 000892 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1236)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1236)
.......-.+.++|||||+.+--. .|+.-+++||.+
T Consensus 194 --------------~~~~~v~r~l~~~IvDEaDsiLID-----------eArtPLIISg~~ 229 (896)
T PRK13104 194 --------------SLTDKVQRELNFAIVDEVDSILID-----------EARTPLIISGAA 229 (896)
T ss_pred --------------chHhhhccccceEEeccHhhhhhh-----------ccCCceeeeCCC
Confidence 001123346789999999986322 233456777754
No 105
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=89.27 E-value=0.76 Score=57.00 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcc
Q 000892 498 TGATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNS 537 (1236)
Q Consensus 498 ~~~tLIV~P~SL-l~QW~~Ei~k~~~~g~L~V~vy~G~~~~ 537 (1236)
.+|+||++|+++ +.|-..-|.+- .|+|+.....+++
T Consensus 454 ~~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 454 AGPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLCAKSRE 490 (935)
T ss_pred CCceEEEcccchhHHHHHHHHHhc----CceEeeeehhhhh
Confidence 379999999986 68998888874 5898887765443
No 106
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.21 E-value=1.2 Score=54.28 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=59.4
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
...||++|+. |+.|=.+|.+|+.-...++..+.+|....+.. ...--..+||+++|-..|..-+...
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q-----~~~~~~gcdIlvaTpGrL~d~~e~g------- 220 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQ-----LRFIKRGCDILVATPGRLKDLIERG------- 220 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhh-----hhhhccCccEEEecCchhhhhhhcc-------
Confidence 4689999986 88999999999987666777766665433211 2233467999999999988654310
Q ss_pred hhhhhhcccCCCccccccccccceeecccccccc
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1236)
+ -.|..+. ++|||||.++-
T Consensus 221 --------~-----i~l~~~k--~~vLDEADrMl 239 (482)
T KOG0335|consen 221 --------K-----ISLDNCK--FLVLDEADRML 239 (482)
T ss_pred --------e-----eehhhCc--EEEecchHHhh
Confidence 0 0133333 89999999753
No 107
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=88.39 E-value=0.28 Score=48.26 Aligned_cols=82 Identities=11% Similarity=-0.066 Sum_probs=49.2
Q ss_pred ccchhhhhhhHhhHHHHHHhHhHHHH---HHHHH--HHHHHHHHhhccCCCCc----------------ceeEEecCCcC
Q 000892 822 LRKLVMALNGLAGIALIEKNLSQAVS---LYKEA--MAVVEEHSEDFRLDPLL----------------NIHLHHNLTEI 880 (1236)
Q Consensus 822 ~rkvLifsq~la~L~iIe~~l~~a~~---~y~~~--l~~~~~~~~~fr~D~~~----------------~lh~~~Nl~dw 880 (1236)
..++|+|++.......+.+.+..... .+... ...+....+.|+..... .-|+.+--.+|
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~ 107 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW 107 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC
Confidence 36788888888777777776654211 11111 12333444444443321 11344444479
Q ss_pred Ccchhhhhh-hhhccCCCCceEEE
Q 000892 881 LPMVANCAT-ELSQNEQHFPGCSE 903 (1236)
Q Consensus 881 np~~d~QA~-R~hRiGQ~k~V~Vy 903 (1236)
++....|+. ||+|.||+..|.+|
T Consensus 108 ~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 108 SPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CHHHheecccccccCCCCceEEeC
Confidence 999999999 99999998777654
No 108
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.37 E-value=5.4 Score=46.55 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=26.5
Q ss_pred ccceeeccccccccCch-HHHHHHHHHh--ccCeEEEEeccCCC
Q 000892 598 FWWRICLDEAQMVESNA-AAATEMALRL--YAKHRWCITGTPIQ 638 (1236)
Q Consensus 598 ~w~rVILDEAH~IKN~~-Sk~~kal~~L--~a~~RwlLTGTPiq 638 (1236)
.||.+|+||..-.-=.. -....++..- ....++.||+||-.
T Consensus 202 aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 202 AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred hccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 58999999998753211 2233344432 24568999999973
No 109
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=87.72 E-value=1.4 Score=56.36 Aligned_cols=125 Identities=13% Similarity=0.077 Sum_probs=65.8
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcC-----CCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhccc
Q 000892 499 GATLIVCPAPILA----QWDAEITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSH 569 (1236)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~-----~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~ 569 (1236)
..++||||+..+. +=-+++..|+ ..-.+..++|...... .....-....|+|.+.+.+.++--.
T Consensus 105 ~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~-------~~~~~~~~~~vLl~~~~Afnk~~in 177 (985)
T COG3587 105 FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEK-------FKFKSNNKPCVLLIFVSAFNKEEIN 177 (985)
T ss_pred eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHH-------HhhccCCCceEEEEehhhhcccccc
Confidence 3689999985442 2233444444 3335777777522111 0122223456888888888776210
Q ss_pred CCCCcccchhhhhhcccCCCcccc---ccccccceeeccccccccCchHHHHHHHHHhccCeEEEEecc
Q 000892 570 DSDRHEGDRRFMRFQKRYPVIPTL---LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGT 635 (1236)
Q Consensus 570 ~~~~~~~~~~~~r~~kry~~~~s~---L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGT 635 (1236)
...-.. ..+.......-..+| |...+ -.||+||-|++... .+++.++..++.-.-+=-.+|
T Consensus 178 an~iN~---~s~~~~~~~~~~~spvd~la~~r-PIvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 178 ANMINS---ESMENTNLFNGATSPVDALASMR-PIVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGAT 241 (985)
T ss_pred ccccch---hhhcccCccccccCHHHHHHhcC-CEEEecChhhcccc-hHHHHHHHhhCceEEEEeccc
Confidence 000000 000000000000111 22222 26899999999865 789999999988876666677
No 110
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.22 E-value=4.3 Score=49.45 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=76.5
Q ss_pred CCCcEEEEeCCch----HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCC
Q 000892 497 ATGATLIVCPAPI----LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 572 (1236)
Q Consensus 497 ~~~~tLIV~P~SL----l~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~ 572 (1236)
.+-++||+||.-= +++-...+..|+ ++.|...-|.-..+. ....--...||||.|.+.|-.++.....
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt---~I~~~L~vGGL~lk~-----QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFT---DITVGLAVGGLDLKA-----QEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhc---cceeeeeecCccHHH-----HHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 4568999999863 356677888888 688888777543221 1222235689999999999887654221
Q ss_pred CcccchhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHh-ccCeEEEEeccCCCCChhhhhhh
Q 000892 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-YAKHRWCITGTPIQRKLDDLYGL 647 (1236)
Q Consensus 573 ~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L-~a~~RwlLTGTPiqN~L~DL~sL 647 (1236)
+.--....+|+|||.++-... ......++.. +.+..++.|+|-. ..+.||.++
T Consensus 323 ---------------------f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMt-eeVkdL~sl 378 (691)
T KOG0338|consen 323 ---------------------FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMT-EEVKDLASL 378 (691)
T ss_pred ---------------------ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhH-HHHHHHHHh
Confidence 222234569999999864322 2222333322 2445688999953 457777665
No 111
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=86.68 E-value=3.6 Score=56.07 Aligned_cols=61 Identities=18% Similarity=0.080 Sum_probs=39.7
Q ss_pred CccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccc-cccCchHHHHHHHHHh----cc
Q 000892 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ-MVESNAAAATEMALRL----YA 626 (1236)
Q Consensus 552 ~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH-~IKN~~Sk~~kal~~L----~a 626 (1236)
...|+++|.+.|...+... ++ --.++.||||||| +.-|..-... .++.+ +.
T Consensus 163 ~t~I~v~TpG~LL~~l~~d----------------------~~-Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpd 218 (1294)
T PRK11131 163 NTMVKLMTDGILLAEIQQD----------------------RL-LMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPD 218 (1294)
T ss_pred CCCEEEEChHHHHHHHhcC----------------------Cc-cccCcEEEecCccccccccchHHH-HHHHhhhcCCC
Confidence 4679999999999876421 11 2357899999999 5555443222 23332 22
Q ss_pred CeEEEEeccC
Q 000892 627 KHRWCITGTP 636 (1236)
Q Consensus 627 ~~RwlLTGTP 636 (1236)
...+++|+|.
T Consensus 219 lKvILmSATi 228 (1294)
T PRK11131 219 LKVIITSATI 228 (1294)
T ss_pred ceEEEeeCCC
Confidence 4678999997
No 112
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.10 E-value=2.4 Score=50.15 Aligned_cols=108 Identities=19% Similarity=0.324 Sum_probs=76.2
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhc-cCccEEEEeHHHHhhhcccCCCCccc
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
-.+||..|.. |..|=+-|..++.-.+...+++|.|.++.. +..++ ...+|+|.|-..|..-...
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e-------qie~lkrgveiiiatPgrlndL~~~------- 360 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-------QIEDLKRGVEIIIATPGRLNDLQMD------- 360 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh-------HHHHHhcCceEEeeCCchHhhhhhc-------
Confidence 4689999986 556889999998877788899999876542 34444 4688999998887653211
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCc--hHHHHHHHHHhccCeEEEEecc
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGT 635 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~a~~RwlLTGT 635 (1236)
..+.--..-++|||||.++-.. .-+..+.+..++.++-.+||--
T Consensus 361 ---------------n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSA 406 (629)
T KOG0336|consen 361 ---------------NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSA 406 (629)
T ss_pred ---------------CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecc
Confidence 1122233458999999987543 3677888888888776666643
No 113
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=86.04 E-value=1.7 Score=56.71 Aligned_cols=88 Identities=16% Similarity=0.068 Sum_probs=56.6
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
+.+-||+|+-.+. +|...+-+++ +++|-+..+..... .....-.+||+..|...|.-|+-.+.-..
T Consensus 124 ~~VhvvT~ndyLA~RD~e~m~~l~~~l---Gl~v~~i~~~~~~~-------err~~Y~~dI~YGT~~e~gFDYLrD~~~~ 193 (913)
T PRK13103 124 KGVHVVTVNDYLARRDANWMRPLYEFL---GLSVGIVTPFQPPE-------EKRAAYAADITYGTNNEFGFDYLRDNMAF 193 (913)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhccc---CCEEEEECCCCCHH-------HHHHHhcCCEEEEcccccccchhhcccee
Confidence 4688999998773 6888888777 69998887754321 22233448999999888744432211100
Q ss_pred ccchhhhhhcccCCCccccccccccceeecccccccc
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1236)
.......-.+.++|+||+|.|-
T Consensus 194 ---------------~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 194 ---------------SLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred ---------------chhhhcccccceeEechhhhee
Confidence 0012345678899999999873
No 114
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=85.88 E-value=1.7 Score=53.12 Aligned_cols=119 Identities=13% Similarity=0.203 Sum_probs=74.5
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
..|||.|+- |..|=..-+.+-...-.+..-.+-|..... .....+....|+|+|-+.|-.+++...
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k------~E~eRi~~mNILVCTPGRLLQHmde~~------- 209 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK------FELERISQMNILVCTPGRLLQHMDENP------- 209 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH------HHHHhhhcCCeEEechHHHHHHhhhcC-------
Confidence 579999996 445665555443321245554444544332 244566788999999999998775321
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCch-HHHHH-HHHHhc-cCeEEEEeccCCCCChhhhhh
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATE-MALRLY-AKHRWCITGTPIQRKLDDLYG 646 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~k-al~~L~-a~~RwlLTGTPiqN~L~DL~s 646 (1236)
.|..-.-.++|||||.++-... ..+.. .+..|+ .+..++.|+||.. ++.||--
T Consensus 210 --------------~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~-svkdLaR 265 (758)
T KOG0343|consen 210 --------------NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTK-SVKDLAR 265 (758)
T ss_pred --------------CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccch-hHHHHHH
Confidence 2444456789999999975443 22222 334454 4668999999975 4666644
No 115
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=84.12 E-value=4.8 Score=53.66 Aligned_cols=114 Identities=11% Similarity=0.221 Sum_probs=70.1
Q ss_pred cEEEEeC-CchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHH---HhhhcccCCCCcc
Q 000892 500 ATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDV---LKEDLSHDSDRHE 575 (1236)
Q Consensus 500 ~tLIV~P-~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~---L~~d~~~~~~~~~ 575 (1236)
...-|+| .+|+.-|...|.++..+=+++|.-..|.... ....+..-.|+++|-+- +.+. .
T Consensus 366 KIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l--------~~~qieeTqVIV~TPEK~DiITRk--------~ 429 (1674)
T KOG0951|consen 366 KIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL--------GKEQIEETQVIVTTPEKWDIITRK--------S 429 (1674)
T ss_pred eEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc--------hhhhhhcceeEEeccchhhhhhcc--------c
Confidence 4566777 4789999999999998656777777776543 23445556688887543 3332 1
Q ss_pred cchhhhhhcccCCCccccccccccceeeccccccc---cCch--HHHHHHHHHhc----cCeEEEEeccCCCCChhhhhh
Q 000892 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV---ESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYG 646 (1236)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I---KN~~--Sk~~kal~~L~----a~~RwlLTGTPiqN~L~DL~s 646 (1236)
+++.. .--+..+|+||.|++ +.+. |..++..++.. ..+-..||+|-. |.+|.-+
T Consensus 430 gdraY---------------~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLP--Ny~DV~~ 492 (1674)
T KOG0951|consen 430 GDRAY---------------EQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLP--NYEDVAS 492 (1674)
T ss_pred CchhH---------------HHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCC--chhhhHH
Confidence 22111 012456899999999 3332 44455555542 345678999943 3455544
No 117
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=83.94 E-value=3.3 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=19.5
Q ss_pred cceeecCCCcchHHHHHHHHHHhcC
Q 000892 359 GGILADEMGLGKTVELLACIFAHRK 383 (1236)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~~~~ 383 (1236)
.|+|-+-.|.|||+-.|+-.++...
T Consensus 42 ~~llESPTGTGKSLsLLCS~LAW~q 66 (945)
T KOG1132|consen 42 NGLLESPTGTGKSLSLLCSTLAWQQ 66 (945)
T ss_pred hhhccCCCCCCccHHHHHHHHHHHH
Confidence 4788888999999998876666433
No 118
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=83.31 E-value=4.5 Score=53.02 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=67.5
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
+.+.||+|+--+ ..|...+.+|+ +++|....|.... ......-.+||+..|-..|.-|+-.+.-..
T Consensus 124 ~~VhIvT~ndyLA~RD~e~m~~l~~~l---Glsv~~i~~~~~~-------~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~ 193 (908)
T PRK13107 124 KGVHVITVNDYLARRDAENNRPLFEFL---GLTVGINVAGLGQ-------QEKKAAYNADITYGTNNEFGFDYLRDNMAF 193 (908)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhc---CCeEEEecCCCCH-------HHHHhcCCCCeEEeCCCcccchhhhccCcc
Confidence 458999999755 47999999998 6888776554321 012222357899988777655432211000
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhhhh
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL 648 (1236)
.+..+....+.++|+||+..+--.. |+.-+++||.+ ... .++|..+
T Consensus 194 ---------------~~~~~vqr~~~~aIvDEvDsiLiDE-----------ArtPLIISg~~-~~~-~~~y~~~ 239 (908)
T PRK13107 194 ---------------SPQERVQRPLHYALIDEVDSILIDE-----------ARTPLIISGAA-EDS-SELYIKI 239 (908)
T ss_pred ---------------chhhhhccccceeeecchhhhcccc-----------CCCceeecCCC-ccc-hHHHHHH
Confidence 0112344578899999998764332 34557888844 333 4455533
No 119
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=82.42 E-value=6.7 Score=52.24 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=41.0
Q ss_pred cCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCch-HHHHHHHHH-hc-cC
Q 000892 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALR-LY-AK 627 (1236)
Q Consensus 551 ~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~-L~-a~ 627 (1236)
.+..++++|-+.|++-+...+. .+.. -..||+||.|.|.... .-.++-+-. ++ ..
T Consensus 204 ~~A~clvMTTEILRnMlyrg~~--------------------~~~~--i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 204 PDAPCLVMTTEILRNMLYRGSE--------------------SLRD--IEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred CCCceEEeeHHHHHHHhccCcc--------------------cccc--cceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 4567888888999987643211 1223 3469999999998765 344444433 33 34
Q ss_pred eEEEEecc
Q 000892 628 HRWCITGT 635 (1236)
Q Consensus 628 ~RwlLTGT 635 (1236)
.-++||+|
T Consensus 262 ~~v~LSAT 269 (1041)
T COG4581 262 RFVFLSAT 269 (1041)
T ss_pred cEEEEeCC
Confidence 77899999
No 120
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=81.28 E-value=3.6 Score=53.72 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=53.8
Q ss_pred cEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcc
Q 000892 500 ATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1236)
Q Consensus 500 ~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1236)
.+-||+|+..+. +|...+-+++ ++++.+..|..... .....-..||++.|...|.-|+-.+....
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~L---Glsv~~i~~~~~~~-------er~~~y~~dI~ygT~~elgfDyLrd~~~~- 192 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFL---GLSVGVILSGMSPE-------ERREAYAADITYGTNNEFGFDYLRDNMVF- 192 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhc---CCeEEEEcCCCCHH-------HHHHhcCCCeEEECCcchhhhhhhccccc-
Confidence 356999998663 5888888877 68888887753321 11122347999999888865543211100
Q ss_pred cchhhhhhcccCCCccccccccccceeeccccccc
Q 000892 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1236)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1236)
....+..-.+.++|||||..+
T Consensus 193 --------------~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 193 --------------SLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred --------------chhhhcccccceEEEechhhh
Confidence 011234456788999999875
No 121
>PRK04296 thymidine kinase; Provisional
Probab=80.08 E-value=9.1 Score=41.37 Aligned_cols=37 Identities=19% Similarity=0.049 Sum_probs=23.2
Q ss_pred cccceeeccccccccCchHHHHHHHHHhc-cCeEEEEecc
Q 000892 597 IFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGT 635 (1236)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGT 635 (1236)
-.++.||+||||.+.. .+....+..+. ....+++||-
T Consensus 77 ~~~dvviIDEaq~l~~--~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK--EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCCEEEEEccccCCH--HHHHHHHHHHHHcCCeEEEEec
Confidence 3578999999999843 23444444433 4446667653
No 122
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=78.33 E-value=1.4 Score=46.81 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=28.7
Q ss_pred hhhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccc-cccccceeeccccccccCc
Q 000892 547 ISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESN 613 (1236)
Q Consensus 547 ~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~ 613 (1236)
......+||||++|..|-..... . ... ....-..||+||||+|.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~---------~------------~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIR---------K------------SLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHH---------H------------HHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHH---------h------------hhccccccCcEEEEecccchHHH
Confidence 34456789999999998765311 0 011 2234458999999999653
No 123
>PRK14873 primosome assembly protein PriA; Provisional
Probab=77.91 E-value=7.4 Score=50.13 Aligned_cols=107 Identities=7% Similarity=-0.081 Sum_probs=65.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+||++|. ++..|+..-|+..++ .-.+.+||+.-........+ .....++.+|||=|+..+-.
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w-~~~~~G~~~IViGtRSAvFa------------ 253 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW-LAVLRGQARVVVGTRSAVFA------------ 253 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH-HHHhCCCCcEEEEcceeEEe------------
Confidence 569999998 688999999999985 46788899864332111111 12233557789877665432
Q ss_pred hhhhhhcccCCCccccccccccceeecccccc--ccCchHHH--HHHHH----HhccCeEEEEeccCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAA--TEMAL----RLYAKHRWCITGTPI 637 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~--IKN~~Sk~--~kal~----~L~a~~RwlLTGTPi 637 (1236)
|+. +..+||+||=|- .|...+.. ++-+. .+..-.-++-|+||-
T Consensus 254 ---------------P~~--~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 254 ---------------PVE--DLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred ---------------ccC--CCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 222 457899999885 45443222 11111 233444566799995
No 124
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=76.55 E-value=9.2 Score=52.45 Aligned_cols=63 Identities=17% Similarity=0.015 Sum_probs=38.9
Q ss_pred CccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccc-cccCchHHHH--HHHH-HhccC
Q 000892 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ-MVESNAAAAT--EMAL-RLYAK 627 (1236)
Q Consensus 552 ~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH-~IKN~~Sk~~--kal~-~L~a~ 627 (1236)
+-.|+++|.+.|.+.+..+ ++ --.++.||+|||| +.-|..-... +.+. ..+.-
T Consensus 156 ~T~I~~~TdGiLLr~l~~d----------------------~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdL 212 (1283)
T TIGR01967 156 NTLVKLMTDGILLAETQQD----------------------RF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDL 212 (1283)
T ss_pred CceeeeccccHHHHHhhhC----------------------cc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCC
Confidence 4569999999998875321 11 2357899999999 4555443221 2222 12234
Q ss_pred eEEEEeccCC
Q 000892 628 HRWCITGTPI 637 (1236)
Q Consensus 628 ~RwlLTGTPi 637 (1236)
..+++|+|.-
T Consensus 213 KlIlmSATld 222 (1283)
T TIGR01967 213 KIIITSATID 222 (1283)
T ss_pred eEEEEeCCcC
Confidence 5789999973
No 125
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=76.14 E-value=19 Score=46.28 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=27.9
Q ss_pred cccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCC
Q 000892 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1236)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1236)
.|....|+.||+|||-.+-.+.+ +-.|....+++|-|=|.|
T Consensus 356 ~l~~~~Fd~vIIDEAsQ~~ep~~-----lipl~~~~~~vLvGD~~Q 396 (637)
T TIGR00376 356 GLKGWEFDVAVIDEASQAMEPSC-----LIPLLKARKLILAGDHKQ 396 (637)
T ss_pred hhccCCCCEEEEECccccchHHH-----HHHHhhCCeEEEecChhh
Confidence 46778999999999966544432 112222348899898877
No 126
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=76.12 E-value=8.6 Score=47.60 Aligned_cols=114 Identities=19% Similarity=0.153 Sum_probs=69.8
Q ss_pred CCcEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 498 TGATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 498 ~~~tLIV~P~SLl-~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
.+.+|.++|.-.+ .|=..+|.+-..+=.+++.+--|..+.+.... ........++|||+-||+-+---+..
T Consensus 261 g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~-pv~~~t~~dADIIVGTYEGiD~lLRt------- 332 (830)
T COG1202 261 GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE-PVVVDTSPDADIIVGTYEGIDYLLRT------- 332 (830)
T ss_pred CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCC-ccccCCCCCCcEEEeechhHHHHHHc-------
Confidence 5789999998654 57777787766544677777777655432211 12344557899999999976433211
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHh----ccCeEEEEecc
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL----YAKHRWCITGT 635 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L----~a~~RwlLTGT 635 (1236)
.+ .| -.-..||+||.|++.... ...--.+.+| +.-..+.||+|
T Consensus 333 -------g~-------~l--gdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSAT 381 (830)
T COG1202 333 -------GK-------DL--GDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSAT 381 (830)
T ss_pred -------CC-------cc--cccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEee
Confidence 00 01 234689999999998632 2222222332 23456677777
No 127
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=75.93 E-value=9.9 Score=47.48 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=25.7
Q ss_pred ccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCC
Q 000892 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1236)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1236)
+....|+.||+|||-..--+ +.+-.+ -...+++|.|-|.|
T Consensus 354 ~~~~~fD~vIIDEaaQamE~--~cWipv---lk~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 354 LRKRTFDLVIIDEAAQAMEP--QCWIPV---LKGKKFILAGDPKQ 393 (649)
T ss_pred hcccCCCEEEEehhhhhccc--hhhhHH---hcCCceEEeCCccc
Confidence 44567999999998643322 222222 23349999999987
No 128
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=75.36 E-value=9.4 Score=45.32 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.2
Q ss_pred cccccceeeccccccccC
Q 000892 595 TRIFWWRICLDEAQMVES 612 (1236)
Q Consensus 595 ~~i~w~rVILDEAH~IKN 612 (1236)
..-.++.||+||||++..
T Consensus 80 ~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred cCCcCCEEEEehhHhhhh
Confidence 345789999999999986
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=74.00 E-value=10 Score=48.76 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=63.1
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
+.+-||+|+..+. +|...+-+++ +++|....+..... .....-.+||+-+|-..|.-|+-.+.-..
T Consensus 120 ~~VhvvT~NdyLA~RDae~m~~ly~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~~ 189 (764)
T PRK12326 120 RRVHVITVNDYLARRDAEWMGPLYEAL---GLTVGWITEESTPE-------ERRAAYACDVTYASVNEIGFDVLRDQLVT 189 (764)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHhc---CCEEEEECCCCCHH-------HHHHHHcCCCEEcCCcccccccchhhhcc
Confidence 5688999998773 7888888888 69998887653321 22333467887776555554432211100
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCC
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPi 637 (1236)
.+.....-.++++|+||+..+-=. .++.-+++||.+-
T Consensus 190 ---------------~~~~~v~R~~~faIVDEvDSiLID-----------eArtPLiISg~~~ 226 (764)
T PRK12326 190 ---------------DVADLVSPNPDVAIIDEADSVLVD-----------EALVPLVLAGSTP 226 (764)
T ss_pred ---------------ChHhhcCCccceeeecchhhheec-----------cccCceeeeCCCc
Confidence 011234456889999999865311 2455677887553
No 130
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=73.97 E-value=1.5 Score=54.51 Aligned_cols=36 Identities=42% Similarity=0.912 Sum_probs=30.9
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCC
Q 000892 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1236)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~ 450 (1236)
....|+|+...+. .|..++|+.|..|||..|+|+-.
T Consensus 85 ~~~~c~c~~~~~~---~g~~i~c~~c~~Wqh~~C~g~~~ 120 (508)
T KOG1844|consen 85 EISRCDCGLEDDM---EGLMIQCDWCGRWQHKICCGSFK 120 (508)
T ss_pred cccccccccccCC---CceeeCCcccCcccCceeeeecC
Confidence 4578999988775 68899999999999999998654
No 131
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.27 E-value=13 Score=45.44 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCCcE-EEEeCC-chHHHHHHHHHhcCCCCCCeEEE-EcCCCcccccccccchhhhc-cCccEEEEeHHHHhhhcccCCC
Q 000892 497 ATGAT-LIVCPA-PILAQWDAEITRHTRPGSLKTCI-YEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSD 572 (1236)
Q Consensus 497 ~~~~t-LIV~P~-SLl~QW~~Ei~k~~~~g~L~V~v-y~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~ 572 (1236)
.-+|+ ||+||+ .+..|-..|.++|...-.|+++. |.|..... +...+ ..+.||+.|-+.|-..+.-
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~e-------Q~k~Lk~g~EivVaTPgRlid~Vkm--- 363 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWE-------QSKELKEGAEIVVATPGRLIDMVKM--- 363 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHH-------HHHhhhcCCeEEEechHHHHHHHHh---
Confidence 44565 566687 57889999999996544677655 55543321 22222 5678999999988764421
Q ss_pred CcccchhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhccC-eEEEEecc
Q 000892 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAK-HRWCITGT 635 (1236)
Q Consensus 573 ~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~-~RwlLTGT 635 (1236)
....-.+-.++|+|||.++-... .+.-.....++.+ ..++.++|
T Consensus 364 -------------------Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaT 410 (731)
T KOG0339|consen 364 -------------------KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSAT 410 (731)
T ss_pred -------------------hcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeecc
Confidence 01222334578999999875443 2222222334443 35666655
No 132
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.48 E-value=17 Score=44.27 Aligned_cols=110 Identities=19% Similarity=0.180 Sum_probs=66.3
Q ss_pred cEEEEeCCc-hHH---HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcc
Q 000892 500 ATLIVCPAP-ILA---QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~---QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1236)
..|||.|+- |.. +=...|-.|++ .++...+-|...... .+..-.-....|+|.|-+.|..-+.+..
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~--~l~~~l~vGG~~v~~----Di~~fkee~~nIlVgTPGRL~di~~~~~---- 150 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLP--NLNCELLVGGRSVEE----DIKTFKEEGPNILVGTPGRLLDILQREA---- 150 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhh--ccceEEEecCccHHH----HHHHHHHhCCcEEEeCchhHHHHHhchh----
Confidence 579999985 333 44556666665 788888888754321 0111122346699999888876543211
Q ss_pred cchhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhccCeEEE-Eecc
Q 000892 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWC-ITGT 635 (1236)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~~Rwl-LTGT 635 (1236)
..+.--.-..+|||||.++-... ...-..+..|+..+|-. .|+|
T Consensus 151 ----------------~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSAT 197 (567)
T KOG0345|consen 151 ----------------EKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSAT 197 (567)
T ss_pred ----------------hhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccch
Confidence 11333356789999999986543 45555566666655543 3444
No 133
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=68.79 E-value=7.4 Score=47.88 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=27.1
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEE
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCI 530 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~v 530 (1236)
+||||++|+- |..|-.+||+.|+|......+|
T Consensus 58 rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFV 90 (663)
T COG0556 58 RPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFV 90 (663)
T ss_pred CCeEEEecchhHHHHHHHHHHHhCcCcceEEEe
Confidence 6999999975 5679999999999977666665
No 134
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=67.78 E-value=3.1 Score=48.13 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=29.5
Q ss_pred hhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccC
Q 000892 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1236)
Q Consensus 548 ~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1236)
.....+||||++|..|-.+.... .. -....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~---------~~------------~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 207 KAIEFANVVVLPYQYLLDPKIRQ---------AL------------SIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHH---------Hh------------cccccccEEEEeCccChHH
Confidence 34578999999999997653110 00 0012467899999999864
No 135
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=67.78 E-value=3.1 Score=48.13 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=29.5
Q ss_pred hhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccC
Q 000892 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1236)
Q Consensus 548 ~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1236)
.....+||||++|..|-.+.... .. -....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~---------~~------------~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 207 KAIEFANVVVLPYQYLLDPKIRQ---------AL------------SIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHH---------Hh------------cccccccEEEEeCccChHH
Confidence 34578999999999997653110 00 0012467899999999864
No 136
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=66.93 E-value=2.6 Score=48.42 Aligned_cols=49 Identities=37% Similarity=0.848 Sum_probs=37.8
Q ss_pred hhhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000892 411 RERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1236)
Q Consensus 411 ~~~v~cic~~~~~~~~~~g~~v~c~~--c~-~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1236)
.+...|+|..++ .|..|.||. |. -|-|-.|||...+ +-+..+|+.|..
T Consensus 217 ~e~~yC~Cnqvs-----yg~Mi~CDn~~C~~eWFH~~CVGL~~~------------------------PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 217 DEPTYCICNQVS-----YGKMIGCDNPGCPIEWFHFTCVGLKTK------------------------PKGKWYCPRCKA 267 (274)
T ss_pred CCCEEEEecccc-----cccccccCCCCCCcceEEEeccccccC------------------------CCCcccchhhhh
Confidence 345679998443 478899998 99 8999999997653 346689999975
Q ss_pred h
Q 000892 488 L 488 (1236)
Q Consensus 488 ~ 488 (1236)
.
T Consensus 268 ~ 268 (274)
T KOG1973|consen 268 E 268 (274)
T ss_pred h
Confidence 3
No 137
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=63.43 E-value=6.2 Score=39.02 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.5
Q ss_pred ceeeccccccccCchHHHHHHHHHh--ccCeEEEEeccC
Q 000892 600 WRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTP 636 (1236)
Q Consensus 600 ~rVILDEAH~IKN~~Sk~~kal~~L--~a~~RwlLTGTP 636 (1236)
..||+||+|.+. +......++.+ ...-.+++.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25556666665 567789999999
No 138
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=61.21 E-value=5.4 Score=51.79 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=33.4
Q ss_pred hhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCch
Q 000892 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1236)
Q Consensus 548 ~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1236)
.....+|||||++..|-.++... . ...|.......+|+||||.+....
T Consensus 215 ~~a~~AdivVtNH~LLladl~~~-~------------------~~iLp~~~~~~lViDEAH~L~d~A 262 (697)
T PRK11747 215 REIDEADVVVANHDLVLADLELG-G------------------GVVLPDPENLLYVLDEGHHLPDVA 262 (697)
T ss_pred HHHhhCCEEEECcHHHHhhhhcc-C------------------CcccCCCCCCEEEEECccchHHHH
Confidence 34577899999999998876310 0 012333467889999999997443
No 139
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=60.61 E-value=84 Score=36.15 Aligned_cols=87 Identities=18% Similarity=0.061 Sum_probs=50.3
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
+++=||+.+..+ .+|...|-+++ ++.+-...+..... .....-..||+-+|-..+.-|+-.+.-..
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~L---Glsv~~~~~~~~~~-------~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~ 188 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFL---GLSVGIITSDMSSE-------ERREAYAADIVYGTNSEFGFDYLRDNLAL 188 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHT---T--EEEEETTTEHH-------HHHHHHHSSEEEEEHHHHHHHHHHHTT-S
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHh---hhccccCccccCHH-------HHHHHHhCcccccccchhhHHHHHHHHhh
Confidence 467777777665 37999999998 68887766543210 12234467898888877776543211100
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccccccc
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1236)
.........++.+|+||+..+
T Consensus 189 ---------------~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 189 ---------------SKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp ---------------SGGG--SSSSSEEEECTHHHH
T ss_pred ---------------ccchhccCCCCEEEEeccceE
Confidence 011123456788999998754
No 140
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=60.44 E-value=6.2 Score=47.59 Aligned_cols=77 Identities=23% Similarity=0.536 Sum_probs=46.9
Q ss_pred hhhhhcccccccccccccccccccccccccccccCcCC---CCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 000892 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP---RGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1236)
Q Consensus 413 ~v~cic~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~ 489 (1236)
+..|+|..- +...-.-.|+.|+.|+-|.|.+|.--.. .+. .....+...+..|.|..|..
T Consensus 129 C~C~iC~kf-D~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~--------------s~~g~~g~~d~~f~C~~C~~-- 191 (446)
T PF07227_consen 129 CMCCICSKF-DDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGP--------------SVKGSIGTLDMQFHCRACGK-- 191 (446)
T ss_pred CCccccCCc-ccCCCCeeEEeccCCCceehhhhhcccccccCCc--------------cCCCCCccCceEEEccCCCC--
Confidence 455667553 2223345799999999999999952111 010 00111223467899999974
Q ss_pred hccCCCCCCCcEEEEeCCchHHHHHHHHHhcCC
Q 000892 490 EATDSPVATGATLIVCPAPILAQWDAEITRHTR 522 (1236)
Q Consensus 490 ~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~~ 522 (1236)
++-++..|++-|....+
T Consensus 192 ----------------~seLlG~vk~vf~~ca~ 208 (446)
T PF07227_consen 192 ----------------TSELLGFVKKVFQTCAK 208 (446)
T ss_pred ----------------hhhHHHHHHHHHHHHHh
Confidence 24568888887776543
No 141
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=60.36 E-value=17 Score=47.49 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=54.1
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
+.+-||+|+..+. .|...+-+++ +++|....|..... .....-.+||+-+|-..|.-|+-.+.-..
T Consensus 122 ~~v~vvT~neyLA~Rd~e~~~~~~~~L---Gl~vg~i~~~~~~~-------~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~ 191 (796)
T PRK12906 122 KGVHVVTVNEYLSSRDATEMGELYRWL---GLTVGLNLNSMSPD-------EKRAAYNCDITYSTNSELGFDYLRDNMVV 191 (796)
T ss_pred CCeEEEeccHHHHHhhHHHHHHHHHhc---CCeEEEeCCCCCHH-------HHHHHhcCCCeecCCccccccchhhcccc
Confidence 4678899998773 6888888887 69998887753221 22344567888777666655443221100
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccccccc
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1236)
. +..+....++++|+||+..+
T Consensus 192 ~---------------~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 192 Y---------------KEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred c---------------hhhhhccCcceeeeccchhe
Confidence 0 01233456788888988865
No 142
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.63 E-value=25 Score=43.51 Aligned_cols=106 Identities=17% Similarity=0.290 Sum_probs=63.8
Q ss_pred EEEEeCCc-hHHHHHHHHHhcCCCCCCeE----EEEcCCCcccccccccchhhhc-cCccEEEEeHHHHhhhcccCCCCc
Q 000892 501 TLIVCPAP-ILAQWDAEITRHTRPGSLKT----CIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 501 tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V----~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
.|||||.- |..|=.+-+.+...+ ... ++..|.++.. ..+.+ ....|+|-|-+.|...+.+....
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~--~hWIVPg~lmGGEkkKS-------EKARLRKGiNILIgTPGRLvDHLknT~~i- 283 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKP--FHWIVPGVLMGGEKKKS-------EKARLRKGINILIGTPGRLVDHLKNTKSI- 283 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcC--ceEEeeceeeccccccc-------HHHHHhcCceEEEcCchHHHHHHhccchh-
Confidence 69999986 677888888887653 332 2333433322 12222 45789999999998876542211
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccccccccC-----chHHHHHHHHHhc-----------cCeEEEEeccC
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-----NAAAATEMALRLY-----------AKHRWCITGTP 636 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN-----~~Sk~~kal~~L~-----------a~~RwlLTGTP 636 (1236)
.+.++ ..||+|||.+|-. .-+++.+++..++ -..+++||+|-
T Consensus 284 ------------------~~s~L--RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATL 341 (708)
T KOG0348|consen 284 ------------------KFSRL--RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATL 341 (708)
T ss_pred ------------------eeeee--eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhh
Confidence 13333 3489999999753 2356666664321 12356777774
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=58.79 E-value=25 Score=45.87 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=54.6
Q ss_pred CcEEEEe-CCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVC-PAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~-P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
..+|||. =.|++.+-..-+++.--+ .+..|....... -....++-+++..+.|.+...
T Consensus 79 ~~VLvVShRrSL~~sL~~rf~~~~l~---gFv~Y~d~~~~~---------i~~~~~~rLivqIdSL~R~~~--------- 137 (824)
T PF02399_consen 79 KSVLVVSHRRSLTKSLAERFKKAGLS---GFVNYLDSDDYI---------IDGRPYDRLIVQIDSLHRLDG--------- 137 (824)
T ss_pred CeEEEEEhHHHHHHHHHHHHhhcCCC---cceeeecccccc---------ccccccCeEEEEehhhhhccc---------
Confidence 3566664 346666666666553211 334444433211 111357899999999876421
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCc-hHHH-------HHHHHHh--ccCeEEEEeccC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAAA-------TEMALRL--YAKHRWCITGTP 636 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~Sk~-------~kal~~L--~a~~RwlLTGTP 636 (1236)
..+ -+||.|||||+-.+-+. .|.+ ...+..+ ++++.+++-||=
T Consensus 138 --------------~~l--~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 138 --------------SLL--DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred --------------ccc--cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 012 14999999998543221 1211 2222222 588888988883
No 144
>KOG4284 consensus DEAD box protein [Transcription]
Probab=58.29 E-value=26 Score=44.15 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=79.0
Q ss_pred cEEEEeCCchH-HHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 500 ATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 500 ~tLIV~P~SLl-~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
-.+||+|.-=+ -|-.+-|.+.++. .+++..+|-|...... +...+.+..|||-|-+.+..-+..
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~------d~~rlk~~rIvIGtPGRi~qL~el-------- 160 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKL------DLIRLKQTRIVIGTPGRIAQLVEL-------- 160 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhh------hhhhhhhceEEecCchHHHHHHHh--------
Confidence 47999999754 5777777666541 3688999988765432 455667778999999988875432
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCchH---HHHHHHHHhc-cCeEEEEeccCCCCChhhhh
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA---AATEMALRLY-AKHRWCITGTPIQRKLDDLY 645 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S---k~~kal~~L~-a~~RwlLTGTPiqN~L~DL~ 645 (1236)
..+..-+-++.|||||..+-...| .....+..|+ .+..+++++|=-+| |+++.
T Consensus 161 --------------~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ldn~L 217 (980)
T KOG4284|consen 161 --------------GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-LDNLL 217 (980)
T ss_pred --------------cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-HHHHH
Confidence 124445667899999999866444 3444555665 45678899996554 55543
No 145
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=58.01 E-value=53 Score=41.81 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=27.5
Q ss_pred Ccchhhhhh-hhhccCCCCceEEEEcccCCcccccch
Q 000892 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1236)
Q Consensus 881 np~~d~QA~-R~hRiGQ~k~V~VyRlit~~Tiee~i~ 916 (1236)
-|....+|. |++|-|.+-|.+-|||.|+.+..+..+
T Consensus 668 ~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 668 VPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred EechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 344444555 889999999999999999988776543
No 146
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=56.33 E-value=22 Score=43.90 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=57.4
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
..+|.+|.- |..|=..|-.+|..+-.++++..-|...-. .....-...++|||.|-..|-.-+..
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~E-----Eq~fqls~gceiviatPgrLid~Len--------- 389 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFE-----EQGFQLSMGCEIVIATPGRLIDSLEN--------- 389 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchh-----hhhhhhhccceeeecCchHHHHHHHH---------
Confidence 468889986 567889999999876667777666543210 01122335688999998887765431
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccC
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1236)
-.|..-.--+||+|||.++-.
T Consensus 390 -------------r~lvl~qctyvvldeadrmiD 410 (673)
T KOG0333|consen 390 -------------RYLVLNQCTYVVLDEADRMID 410 (673)
T ss_pred -------------HHHHhccCceEeccchhhhhc
Confidence 124444566899999997643
No 147
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=55.97 E-value=9.6 Score=41.98 Aligned_cols=44 Identities=27% Similarity=0.199 Sum_probs=22.5
Q ss_pred cccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChh
Q 000892 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLD 642 (1236)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~ 642 (1236)
+....||+||||++.. ...-..+.++....+++++|=|.|.++.
T Consensus 118 ~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTP--EELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-SEEEEE-SGGG--H--HHHHHHHTTB-TT-EEEEEE--------
T ss_pred ccceEEEEecccCCCH--HHHHHHHcccCCCcEEEEecCceeecCC
Confidence 3457899999998742 3344445667788999999999987654
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.13 E-value=6.8 Score=51.00 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=40.4
Q ss_pred HHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccc
Q 000892 515 AEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL 594 (1236)
Q Consensus 515 ~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L 594 (1236)
+|+.++.. ...++.|... ...+..+||||.+|..|-.... +. ..-
T Consensus 172 EdL~~~g~--~~~~CPY~~s------------r~~~~~advIi~pYnyl~dp~~---------r~------------~~~ 216 (705)
T TIGR00604 172 EDLVEYGE--LLGLCPYFAT------------RKMLPFANIVLLPYQYLLDPKI---------RS------------AVS 216 (705)
T ss_pred HHHHHhcc--cCCCCccHHH------------HHhhhcCCEEEechHHhcCHHH---------HH------------Hhh
Confidence 45666554 5666777753 3445779999999998864311 00 011
Q ss_pred cccccceeeccccccccCc
Q 000892 595 TRIFWWRICLDEAQMVESN 613 (1236)
Q Consensus 595 ~~i~w~rVILDEAH~IKN~ 613 (1236)
..+.-..||+||||+|-+.
T Consensus 217 ~~l~~~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 217 IELKDSIVIFDEAHNLDNV 235 (705)
T ss_pred cccccCEEEEECccchHHH
Confidence 2234478999999999653
No 149
>PRK10536 hypothetical protein; Provisional
Probab=53.90 E-value=12 Score=42.56 Aligned_cols=42 Identities=29% Similarity=0.151 Sum_probs=33.9
Q ss_pred ccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCCh
Q 000892 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 641 (1236)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L 641 (1236)
.=..|||||||++.- ......+.++....+++++|-|-|.++
T Consensus 176 ~~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 176 ENAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred cCCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 346899999999853 455666778899999999999988764
No 150
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=53.74 E-value=23 Score=45.60 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=26.8
Q ss_pred ccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeecccccc
Q 000892 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM 609 (1236)
Q Consensus 553 ~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~ 609 (1236)
-.|-.+|-+.|.+++.+ -+.--.+..|||||||-
T Consensus 350 T~IkFMTDGVLLrEi~~-----------------------DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 350 TSIKFMTDGVLLREIEN-----------------------DFLLTKYSVIILDEAHE 383 (1172)
T ss_pred ceeEEecchHHHHHHHH-----------------------hHhhhhceeEEechhhh
Confidence 45889999999998754 24555688999999995
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=53.07 E-value=39 Score=44.65 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=53.9
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
+.+-||.++--+ ..|...+.+|+ ++.|-+..+.... ......-.+||+-+|-..|.-|+-.+.-..
T Consensus 127 kgVhVVTvNdYLA~RDae~m~~vy~~L---GLtvg~i~~~~~~-------~err~aY~~DItYgTn~e~gFDYLRDnm~~ 196 (939)
T PRK12902 127 KGVHVVTVNDYLARRDAEWMGQVHRFL---GLSVGLIQQDMSP-------EERKKNYACDITYATNSELGFDYLRDNMAT 196 (939)
T ss_pred CCeEEEeCCHHHHHhHHHHHHHHHHHh---CCeEEEECCCCCh-------HHHHHhcCCCeEEecCCcccccchhhhhcc
Confidence 467888887655 48999999999 6888776543221 123344568888887666654432211100
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccccccc
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1236)
.........++++|+||+..|
T Consensus 197 ---------------~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 197 ---------------DISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred ---------------cccccccCccceEEEecccce
Confidence 011234456788999998876
No 152
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=50.94 E-value=5.5 Score=48.40 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=34.0
Q ss_pred hhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000892 415 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1236)
Q Consensus 415 ~cic~~~~~~~~~~g~~v~c~~c~~w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1236)
.|+|........+ ..|||+.|..|.|..|..---+..... .+...|.|..|..
T Consensus 171 c~vC~~g~~~~~N--rmlqC~~C~~~fHq~Chqp~i~~~l~~------------------D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 171 CSVCYCGGPGAGN--RMLQCDKCRQWYHQACHQPLIKDELAG------------------DPFYEWFCDVCNR 223 (464)
T ss_pred eeeeecCCcCccc--eeeeecccccHHHHHhccCCCCHhhcc------------------CccceEeehhhcc
Confidence 4445444444444 679999999999999974332222222 2456789999975
No 153
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=48.94 E-value=36 Score=38.61 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=15.4
Q ss_pred cceeecCCCcchHHHHHHHH
Q 000892 359 GGILADEMGLGKTVELLACI 378 (1236)
Q Consensus 359 GGILADEMGLGKTvq~LALI 378 (1236)
.-||.=..|.|||..+-++.
T Consensus 44 ~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 34678889999998876654
No 154
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=48.31 E-value=66 Score=42.01 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=66.0
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
+.+||++|. ++..|-.+.|+..+ ..++.++|+.=..+.... .......++..|||=|...+-.
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~-~W~~~~~G~~~vVIGtRSAlF~------------ 309 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYR-VWRRARRGEARVVIGTRSALFL------------ 309 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHH-HHHHHhcCCceEEEEechhhcC------------
Confidence 579999997 78899999999888 478888887532211100 0112333667788877665543
Q ss_pred hhhhhhcccCCCccccccccccceeecccccc--ccCchHHHH--HHH----HHhccCeEEEEeccCC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAAT--EMA----LRLYAKHRWCITGTPI 637 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~--IKN~~Sk~~--kal----~~L~a~~RwlLTGTPi 637 (1236)
||. +-..||+||=|- .|..+...+ +-+ .....---++-|+||-
T Consensus 310 ---------------Pf~--~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 310 ---------------PFK--NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred ---------------chh--hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 222 346899999996 454442221 111 1233445788899995
No 155
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=47.74 E-value=44 Score=41.55 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=66.3
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
-.|||+|.- |..|-.+-|..-++...+++..+.|.-.... ...--....||||.|-+.|-.-+...+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK-----QqRlL~~~p~IVVATPGRlweli~e~n------- 332 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK-----QQRLLNQRPDIVVATPGRLWELIEEDN------- 332 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH-----HHHHHhcCCCEEEecchHHHHHHHhhh-------
Confidence 379999996 6788888888887777899998888532210 011111367899999988876543210
Q ss_pred hhhhhcccCCCccccccccccceeecccccccc--CchHHHHHHHHHhc------cCeEEEEecc
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAAATEMALRLY------AKHRWCITGT 635 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK--N~~Sk~~kal~~L~------a~~RwlLTGT 635 (1236)
..+ ++ +. .-.++|||||.++- ..-.-.++.+..|. -...++.|+|
T Consensus 333 ~~l---~~-------~k--~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSAT 385 (731)
T KOG0347|consen 333 THL---GN-------FK--KVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSAT 385 (731)
T ss_pred hhh---hh-------hh--hceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEE
Confidence 000 01 11 23479999999863 22233333333332 2234666666
No 156
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.38 E-value=78 Score=37.58 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=69.4
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccch
Q 000892 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1236)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~ 578 (1236)
-.||+.|.. +..|=.+.|.---.+-.+++.++.|....-. ....-....++|++|-+.+.-.+....+
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~-----qa~~L~~rPHvVvatPGRlad~l~sn~~------ 145 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM-----QAAILSDRPHVVVATPGRLADHLSSNLG------ 145 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhh-----hhhhcccCCCeEecCccccccccccCCc------
Confidence 469999986 5567777666544444788888777543210 1222234578999999988765432100
Q ss_pred hhhhhcccCCCccccccccccceeeccccccccCch-HHHHHHHH-Hhcc-CeEEEEeccCCCCChhhh
Q 000892 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLYA-KHRWCITGTPIQRKLDDL 644 (1236)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~-~L~a-~~RwlLTGTPiqN~L~DL 644 (1236)
.....+. .-..+|+|||.++-+.. ...-+.+. .++. +..+++|+| |.+.+.++
T Consensus 146 ----------~~~~~~~--rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSAT-itd~i~ql 201 (442)
T KOG0340|consen 146 ----------VCSWIFQ--RLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSAT-ITDTIKQL 201 (442)
T ss_pred ----------cchhhhh--ceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEee-hhhHHHHh
Confidence 0011122 23468999999987653 22222222 2444 478999999 33444444
No 157
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=46.22 E-value=9 Score=42.86 Aligned_cols=48 Identities=38% Similarity=0.869 Sum_probs=37.4
Q ss_pred hhhhhhhccccccccccccccccccc--ccc-cccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000892 411 RERVECICGAVSESRKYKGLWVQCDI--CDA-WQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1236)
Q Consensus 411 ~~~v~cic~~~~~~~~~~g~~v~c~~--c~~-w~h~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1236)
++.+.|.|...+- |.-|.||. |.. |-|-.|||.... +.+..+|+.|..
T Consensus 219 ~e~lYCfCqqvSy-----GqMVaCDn~nCkrEWFH~~CVGLk~p------------------------PKG~WYC~eCk~ 269 (271)
T COG5034 219 GEELYCFCQQVSY-----GQMVACDNANCKREWFHLECVGLKEP------------------------PKGKWYCPECKK 269 (271)
T ss_pred CceeEEEeccccc-----ccceecCCCCCchhheeccccccCCC------------------------CCCcEeCHHhHh
Confidence 4678899987763 78899964 644 999999998754 457789999964
No 158
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=45.22 E-value=45 Score=40.95 Aligned_cols=110 Identities=23% Similarity=0.221 Sum_probs=63.9
Q ss_pred cEEEEeCCchH-HHHHHHHHhcCCC-CCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 500 ATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 500 ~tLIV~P~SLl-~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
.+|||||.--+ .|=..|.++-..- .+..|-+.-|..+.+.. .........|+|.|-+.|...+.....
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e-----~~kl~k~~niliATPGRLlDHlqNt~~----- 225 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE-----ADKLVKGCNILIATPGRLLDHLQNTSG----- 225 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH-----HHHhhccccEEEeCCchHHhHhhcCCc-----
Confidence 58999999754 5776665543321 15666666665443211 111123678999999999877653211
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCch--HHHHHHHHHhc-cCeEEEEecc
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGT 635 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGT 635 (1236)
+.--.-.++|+|||.+|-... --.-+.+..++ -+..++.|+|
T Consensus 226 ----------------f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT 270 (543)
T KOG0342|consen 226 ----------------FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSAT 270 (543)
T ss_pred ----------------chhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCC
Confidence 111222789999999985432 22223333333 4556788888
No 159
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=43.93 E-value=35 Score=45.69 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=79.7
Q ss_pred CCCCcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccc-ccchhhhccCccEEEEeHHHHhhhcccCCCC
Q 000892 496 VATGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDT-SIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1236)
Q Consensus 496 ~~~~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~-~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~ 573 (1236)
...+-||||.|. ||+. +.+.+..+ ..++....++......... ..........+.|+-+|-+.+...-..
T Consensus 302 l~~gitvVISPL~SLm~---DQv~~L~~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l---- 373 (941)
T KOG0351|consen 302 LLGGVTVVISPLISLMQ---DQVTHLSK-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGL---- 373 (941)
T ss_pred ccCCceEEeccHHHHHH---HHHHhhhh-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccch----
Confidence 345689999997 5653 22333222 2466666666543311000 000111223678999999988764210
Q ss_pred cccchhhhhhcccCCCcccccccc----ccceeeccccccccCch---HHHHHHHH----HhccCeEEEEeccCCCCChh
Q 000892 574 HEGDRRFMRFQKRYPVIPTLLTRI----FWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLD 642 (1236)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i----~w~rVILDEAH~IKN~~---Sk~~kal~----~L~a~~RwlLTGTPiqN~L~ 642 (1236)
. ..+... .-.++|+||||.+.... -.-++.+. +....--++||+|=-.+--+
T Consensus 374 -------~----------~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~ 436 (941)
T KOG0351|consen 374 -------L----------ESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVRE 436 (941)
T ss_pred -------h----------hHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHH
Confidence 0 011111 14689999999986543 12233333 33455689999999888889
Q ss_pred hhhhhhhccCCCCCC
Q 000892 643 DLYGLLRFLKSSPFS 657 (1236)
Q Consensus 643 DL~sLL~FL~p~~f~ 657 (1236)
|+...|..-+|..|.
T Consensus 437 DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 437 DVIRSLGLRNPELFK 451 (941)
T ss_pred HHHHHhCCCCcceec
Confidence 999999988887544
No 160
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.62 E-value=1.8e+02 Score=36.42 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=23.9
Q ss_pred ccceeeccccccccCchHHHHHHH-HHh---ccCeEEEEeccCCCC
Q 000892 598 FWWRICLDEAQMVESNAAAATEMA-LRL---YAKHRWCITGTPIQR 639 (1236)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal-~~L---~a~~RwlLTGTPiqN 639 (1236)
.+..+|+||+|++... ...++ +.| +..-+++++.|-+..
T Consensus 116 ~~KVvIIDEah~Ls~~---A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 116 KFKVYIIDEVHMLSNS---AFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred CceEEEEeChHhCCHH---HHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 6789999999999542 22233 333 344567776664443
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=43.04 E-value=5.5e+02 Score=35.23 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=48.4
Q ss_pred ccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCchHHHH-HHHH--Hhcc
Q 000892 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT-EMAL--RLYA 626 (1236)
Q Consensus 550 l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~-kal~--~L~a 626 (1236)
+-..+|+|.|-+.+..-..... + .....++..+-=..||+||.|..-......- +.+. ..-.
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r----~-----------~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG 624 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHR----G-----------GHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLG 624 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcc----c-----------chhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcC
Confidence 3456788988888765431100 0 0111235566667899999999865443332 2222 2346
Q ss_pred CeEEEEeccCCCCChhhhhh
Q 000892 627 KHRWCITGTPIQRKLDDLYG 646 (1236)
Q Consensus 627 ~~RwlLTGTPiqN~L~DL~s 646 (1236)
...++||+|-...-...|+.
T Consensus 625 ~~VlLmSATLP~~l~~~L~~ 644 (1110)
T TIGR02562 625 SRVLLSSATLPPALVKTLFR 644 (1110)
T ss_pred CCEEEEeCCCCHHHHHHHHH
Confidence 77899999977655554443
No 162
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=42.87 E-value=16 Score=48.50 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=29.9
Q ss_pred hccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccC
Q 000892 549 ELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1236)
Q Consensus 549 ~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1236)
....+|||||++..|..++... ..+ -.++.+|+||||.+..
T Consensus 410 ~a~~AdivItNHall~~~~~~~---------------------~~~--p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 410 KAKTARLLITNHAYFLTRVQDD---------------------KDF--ARNKVLVFDEAQKLML 450 (820)
T ss_pred HHHhCCEEEEchHHHHHHHhhc---------------------cCC--CCCCEEEEECcchhHH
Confidence 3567999999999998865210 001 2488999999999963
No 163
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=42.73 E-value=15 Score=49.39 Aligned_cols=44 Identities=32% Similarity=0.375 Sum_probs=31.2
Q ss_pred hhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCc
Q 000892 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1236)
Q Consensus 548 ~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1236)
.....+|||||++..|-.++.... ..| -.+..+|+||||.+...
T Consensus 427 ~~a~~AdivItNHalLl~dl~~~~--------------------~il--p~~~~lViDEAH~l~d~ 470 (928)
T PRK08074 427 NRAKFADLVITNHALLLTDLTSEE--------------------PLL--PSYEHIIIDEAHHFEEA 470 (928)
T ss_pred HHHhcCCEEEECHHHHHHHHhhhc--------------------ccC--CCCCeEEEECCchHHHH
Confidence 345789999999999998763100 012 23789999999998643
No 164
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=42.35 E-value=55 Score=43.25 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=51.7
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCc
Q 000892 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1236)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~ 574 (1236)
+.+-||+++.-+ ..|...+.+|+ ++.|-+..+..... .....-.+||+-+|-..|.-|+-.+.-..
T Consensus 118 ~~VhVvT~NdyLA~RD~e~m~pvy~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~~ 187 (870)
T CHL00122 118 KGVHIVTVNDYLAKRDQEWMGQIYRFL---GLTVGLIQEGMSSE-------ERKKNYLKDITYVTNSELGFDYLRDNMAL 187 (870)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHc---CCceeeeCCCCChH-------HHHHhcCCCCEecCCccccccchhhccCc
Confidence 567888888655 47999999999 58887765532211 22233446777666555544432211100
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccccccc
Q 000892 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1236)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1236)
.+.....-.++++|+||+..+
T Consensus 188 ---------------~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 188 ---------------SLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred ---------------ChHHhhccccceeeeecchhh
Confidence 011233456789999999875
No 165
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=40.92 E-value=1.8e+02 Score=38.92 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=30.2
Q ss_pred cccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCC
Q 000892 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1236)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1236)
.|...+||++|+|||-.|--|. .+.-|.-..|++|-|-+.|
T Consensus 791 lf~~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 791 LFVNRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 4666789999999998876554 2334566778888887765
No 166
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=40.47 E-value=32 Score=40.52 Aligned_cols=131 Identities=12% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCc-ccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcc
Q 000892 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1236)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~-~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~ 575 (1236)
.|-+|||||. ||+.-=.-.++..- +....++.... .....-.......-.++.++-+|.+.+.+.-.
T Consensus 134 dg~alvi~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~------- 202 (695)
T KOG0353|consen 134 DGFALVICPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKK------- 202 (695)
T ss_pred CCceEeechhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHH-------
Confidence 3789999997 56653333344321 22222222111 10000000111223556778788887765311
Q ss_pred cchhhhhhcccCCCccccccccccceeeccccccccCch---HHHHHHH----HHhccCeEEEEeccCCCCChhhhhhhh
Q 000892 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMA----LRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1236)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~---Sk~~kal----~~L~a~~RwlLTGTPiqN~L~DL~sLL 648 (1236)
-..+.. ..+....|.+|.+||.|...... -.-++++ ++++...-+.||+|...|-++|.-.+|
T Consensus 203 ---~mnkle-------ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 203 ---FMNKLE-------KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred ---HHHHHH-------HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHH
Confidence 011111 13555668899999999864321 1123333 345677789999999999998877765
Q ss_pred h
Q 000892 649 R 649 (1236)
Q Consensus 649 ~ 649 (1236)
.
T Consensus 273 ~ 273 (695)
T KOG0353|consen 273 C 273 (695)
T ss_pred h
Confidence 4
No 167
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=40.16 E-value=28 Score=31.31 Aligned_cols=17 Identities=6% Similarity=-0.228 Sum_probs=16.1
Q ss_pred cCCcchhhhhh-hhhccC
Q 000892 879 EILPMVANCAT-ELSQNE 895 (1236)
Q Consensus 879 dwnp~~d~QA~-R~hRiG 895 (1236)
.|++....|+. ||+|+|
T Consensus 61 ~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 61 PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp ESSHHHHHHHHTTSSTTT
T ss_pred CCCHHHHHHHhhcCCCCC
Confidence 69999999999 999998
No 168
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=36.97 E-value=61 Score=41.76 Aligned_cols=41 Identities=20% Similarity=0.439 Sum_probs=30.1
Q ss_pred cCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCc
Q 000892 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1236)
Q Consensus 551 ~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1236)
.++.-+|+|-+.|++-+...+ .....+.| ||+||.|+++..
T Consensus 210 P~ASCLVMTTEILRsMLYRGS--------------------EvmrEVaW--VIFDEIHYMRDk 250 (1041)
T KOG0948|consen 210 PDASCLVMTTEILRSMLYRGS--------------------EVMREVAW--VIFDEIHYMRDK 250 (1041)
T ss_pred CCCceeeeHHHHHHHHHhccc--------------------hHhheeee--EEeeeehhcccc
Confidence 456789999999998765311 13556666 899999999864
No 169
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=36.06 E-value=1.1e+02 Score=40.77 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=15.2
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 000892 361 ILADEMGLGKTVELLACIFA 380 (1236)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1236)
||.-..|+|||..+..|...
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARS 60 (824)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 56667899999887776643
No 170
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=35.34 E-value=60 Score=31.76 Aligned_cols=62 Identities=21% Similarity=0.408 Sum_probs=39.7
Q ss_pred ccchHHHHHHHHHHHHH----HHHHHHHHHHhhhhhcCCChhhhhhcccccccccCCCCCcccccccc
Q 000892 1063 SGLTYHIQSSLDQLEAS----RKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELD 1126 (1236)
Q Consensus 1063 ~gL~~~l~~~ld~L~~~----R~~~~~~l~~L~~~~~~p~~~~Ve~a~~C~~C~~~~~~~~C~~C~~~ 1126 (1236)
.+.+-.+...|++|++. +.+++.++..+....... +.. .....|..|-....+.+|.+|++-
T Consensus 36 ~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~~~~~-~~~-~~~~~C~~CG~pss~~iC~~C~l~ 101 (104)
T TIGR00269 36 LSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPLLKEL-SEQ-EDLRRCERCGEPTSGRICKACKFL 101 (104)
T ss_pred CCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHHhhcc-ccc-ccCCcCCcCcCcCCccccHhhhhh
Confidence 45556677777777764 455666665555432211 011 125679999888889999999875
No 171
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=35.20 E-value=17 Score=46.01 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=38.7
Q ss_pred CCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeec
Q 000892 525 SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICL 604 (1236)
Q Consensus 525 ~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVIL 604 (1236)
.++.+.|+|.+. ....+++|+-.|..|-.+-.. . +.=..+.=..||+
T Consensus 308 ~~~~CPYY~SR~------------avp~aqlV~LPYQ~LL~~stR---------~------------slgI~LkdsIvIi 354 (821)
T KOG1133|consen 308 ELRGCPYYASRR------------AVPQAQLVTLPYQLLLHESTR---------K------------SLGISLKDSIVII 354 (821)
T ss_pred hcCCCCchhhhh------------ccccccEEeccHHHHHhHHHH---------H------------hcCccccccEEEE
Confidence 578888998654 345689999999999875321 1 1112334458999
Q ss_pred cccccccCc
Q 000892 605 DEAQMVESN 613 (1236)
Q Consensus 605 DEAH~IKN~ 613 (1236)
||||++-+.
T Consensus 355 DEAHNlidt 363 (821)
T KOG1133|consen 355 DEAHNLIDT 363 (821)
T ss_pred echhHHHHH
Confidence 999998654
No 172
>PF13173 AAA_14: AAA domain
Probab=34.33 E-value=37 Score=33.99 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=25.9
Q ss_pred ccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCC
Q 000892 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1236)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN 639 (1236)
.-.+|++||+|.+.+.... .+.+..-....++++||.-...
T Consensus 61 ~~~~i~iDEiq~~~~~~~~-lk~l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDA-LKFLVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred CCcEEEEehhhhhccHHHH-HHHHHHhccCceEEEEccchHH
Confidence 3457999999999764322 2222222245699999985443
No 173
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=33.29 E-value=57 Score=39.45 Aligned_cols=106 Identities=21% Similarity=0.153 Sum_probs=67.9
Q ss_pred CcEEEEeCCc-hHHH---HHHHHHhcCCCCCCeEE-EEcCCCcccccccccchhhhc-cCccEEEEeHHHHhhhcccCCC
Q 000892 499 GATLIVCPAP-ILAQ---WDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSD 572 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~Q---W~~Ei~k~~~~g~L~V~-vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~ 572 (1236)
-+.||+.|+. |..| -..++.+++ .++.. +|+|.+... +...+ .+.||||.|-..+..-...
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt---~lr~s~~~ggD~~ee-------qf~~l~~npDii~ATpgr~~h~~ve--- 157 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGT---KLRQSLLVGGDSIEE-------QFILLNENPDIIIATPGRLLHLGVE--- 157 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhcccc---chhhhhhcccchHHH-------HHHHhccCCCEEEecCceeeeeehh---
Confidence 3789999986 4344 456666666 56665 666655432 23333 3689999888766532110
Q ss_pred CcccchhhhhhcccCCCccccccccccceeeccccccccC--chHHHHHHHHHhcc-CeEEEEeccC
Q 000892 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMALRLYA-KHRWCITGTP 636 (1236)
Q Consensus 573 ~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN--~~Sk~~kal~~L~a-~~RwlLTGTP 636 (1236)
..|.--.-.+||+|||.+|-. ..-+..+.+.+++. ...+++|||-
T Consensus 158 -------------------m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 158 -------------------MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred -------------------eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 013333456899999999743 34677777888864 4688999993
No 174
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=33.07 E-value=1.5e+02 Score=37.70 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=37.8
Q ss_pred ccccccccceeecccccccc----CchHHHHHHHH---HhccCeEEEEeccCCCCChhhhhhh
Q 000892 592 TLLTRIFWWRICLDEAQMVE----SNAAAATEMAL---RLYAKHRWCITGTPIQRKLDDLYGL 647 (1236)
Q Consensus 592 s~L~~i~w~rVILDEAH~IK----N~~Sk~~kal~---~L~a~~RwlLTGTPiqN~L~DL~sL 647 (1236)
+-|....-.+|++||....- +.......+-. ......++++..||....-..++.+
T Consensus 128 ~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 128 SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 45788888999999999873 22233333333 3446789999999998754444443
No 175
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=29.71 E-value=1.4e+02 Score=40.22 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCc
Q 000892 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1236)
Q Consensus 511 ~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~ 590 (1236)
..|+.-+.+|. +|.|-+....... ......-.+||+-.|-..|.-|+-.++-. ..
T Consensus 196 aewm~p~y~fl---GLtVg~i~~~~~~-------~~Rr~aY~~DItYgTn~EfGFDYLRDnma---------------~~ 250 (1025)
T PRK12900 196 KEWMNPVFEFH---GLSVGVILNTMRP-------EERREQYLCDITYGTNNEFGFDYLRDNMA---------------GT 250 (1025)
T ss_pred HHHHHHHHHHh---CCeeeeeCCCCCH-------HHHHHhCCCcceecCCCccccccchhccc---------------cc
Confidence 48999999998 6888665332111 02223445777766655555443322111 01
Q ss_pred cccccccccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCCChhhhhh
Q 000892 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 646 (1236)
Q Consensus 591 ~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN~L~DL~s 646 (1236)
+..+.+..+.+.|+||+..|-=. .|+.-+++|| |+.+...++|.
T Consensus 251 ~~~~vqR~~~faIVDEvDSvLID-----------eARTPLIISg-p~~~~~~~~y~ 294 (1025)
T PRK12900 251 PEEMVQRDFYFAIVDEVDSVLID-----------EARTPLIISG-PVPNADNSKFQ 294 (1025)
T ss_pred hhhhhccCCceEEEechhhhhhc-----------cccCceEEeC-CCCCcchHHHH
Confidence 22356678899999999865211 3555688998 44444344443
No 176
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=27.60 E-value=86 Score=41.67 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=78.2
Q ss_pred cCccccccchhhhhccCCCCCCCcEEEEeCC-chHHHHHHHHHhcCCCCC-CeEEEEcCCCcccccccccchhhhccCcc
Q 000892 477 DGEHICQWCDELIEATDSPVATGATLIVCPA-PILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGAD 554 (1236)
Q Consensus 477 ~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~-SLl~QW~~Ei~k~~~~g~-L~V~vy~G~~~~~~~~~~~~~~~~l~~~D 554 (1236)
...|+|+.|.+.. -+....+-++-|+|. +++.|=..++.--+.... .+.....|.-...+ . ...-.+.
T Consensus 538 GKTfisfY~iEKV---LResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEY------s-inp~nCQ 607 (1330)
T KOG0949|consen 538 GKTFISFYAIEKV---LRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEY------S-INPWNCQ 607 (1330)
T ss_pred CceeccHHHHHHH---HhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHh------c-CCchhce
Confidence 4557777776521 111234567777775 566676666554331111 11111222111110 0 0123567
Q ss_pred EEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccc-cccccceeeccccccccCch-HHHHHHHHHhccCeEEEE
Q 000892 555 IVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCI 632 (1236)
Q Consensus 555 VVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~a~~RwlL 632 (1236)
|.||--+-+..-+... |.+. .--+-.+||+||.|.|.|.. +.....+..+-.---++|
T Consensus 608 VLITvPecleslLlsp--------------------p~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~L 667 (1330)
T KOG0949|consen 608 VLITVPECLESLLLSP--------------------PHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVL 667 (1330)
T ss_pred EEEEchHHHHHHhcCc--------------------hhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCeeEE
Confidence 9999888887754310 0000 01134689999999999876 666666666666677899
Q ss_pred eccCCCCChhhhhhhhh
Q 000892 633 TGTPIQRKLDDLYGLLR 649 (1236)
Q Consensus 633 TGTPiqN~L~DL~sLL~ 649 (1236)
++| ++++..++..++
T Consensus 668 SAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 668 SAT--IGNPNLFQKWLN 682 (1330)
T ss_pred ecc--cCCHHHHHHHHH
Confidence 999 556666655444
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=26.99 E-value=78 Score=34.36 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=24.9
Q ss_pred ccceeeccccccccCchHHHHHHHHHhcc-CeEEEEeccCCC
Q 000892 598 FWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQ 638 (1236)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a-~~RwlLTGTPiq 638 (1236)
..++||+|||.++.+. .....+..+.. ..++++-|-|-|
T Consensus 93 ~~~vliVDEasmv~~~--~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSR--QLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp STSEEEESSGGG-BHH--HHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred cccEEEEecccccCHH--HHHHHHHHHHhcCCEEEEECCcch
Confidence 3569999999999643 34444444443 679999999876
No 178
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.82 E-value=46 Score=34.53 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=38.4
Q ss_pred cCCCCCcccccCccccceeccCCCCccCCCCCCCCCcccceeecCCCcchHHHHHHHHHHhcC
Q 000892 321 FSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHRK 383 (1236)
Q Consensus 321 ~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGGILADEMGLGKTvq~LALIl~~~~ 383 (1236)
+.|.|.....-..+..+|||.+|+.--++++.......|++ .||-=.-|.|+-|+..|..
T Consensus 7 LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~~~~~~---~~~~p~~Vr~sHlLVKH~~ 66 (163)
T KOG3259|consen 7 LPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSKSGGKI---GQGEPARVRCSHLLVKHKG 66 (163)
T ss_pred CCchhheeccccCCCcceeccccchhhccCCCccccccccc---cCCCccceeEEEEEEcccc
Confidence 34568776666778899999999988887776554333433 3333345555555555543
No 179
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=26.62 E-value=1.8e+02 Score=39.32 Aligned_cols=100 Identities=12% Similarity=-0.025 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHHHHH----HH-HHHhh--------------
Q 000892 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAV----VE-EHSED-------------- 862 (1236)
Q Consensus 802 t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~l~~----~~-~~~~~-------------- 862 (1236)
|..+-...+++.+. +..+.++-|||-+.....=.+|...|....... .+|.. .+ +.+.+
T Consensus 609 t~~eK~~Aii~ei~-~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H-~VLNAK~h~~EAeIVA~AG~~GaVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEIT-ELSEAGRPVLVGTTSVEISELLSRMLKMRKIPH-NVLNAKLHQKEAEIVAEAGQPGTVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHH-HHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcH-HHhhccchhhHHHHHHhcCCCCcEEEeccCc
Confidence 55555666666655 344567888888777776677766665543222 22221 11 11111
Q ss_pred -ccCCCC--------cceeEEecCCcCCcchhhhhh-hhhccCCCCceEEE
Q 000892 863 -FRLDPL--------LNIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSE 903 (1236)
Q Consensus 863 -fr~D~~--------~~lh~~~Nl~dwnp~~d~QA~-R~hRiGQ~k~V~Vy 903 (1236)
--+|.- --||++-.-..=+.-.|+|.. ||+|-|.+=...-|
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 112211 223555544456678999999 99999987444433
No 180
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=26.58 E-value=3.1e+02 Score=31.88 Aligned_cols=109 Identities=18% Similarity=0.122 Sum_probs=65.0
Q ss_pred cEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcccccccccchhhhc-cCccEEEEeHHHHhhhcccCCCCcccc
Q 000892 500 ATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 500 ~tLIV~P~SL-l~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L~~d~~~~~~~~~~~ 577 (1236)
-.||+.|.-= ..|-..-+.-...+-++.++..-|.+..+. +...+ -...+|.-|.+.+-.-+..
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge------dikkld~G~hvVsGtPGrv~dmikr-------- 162 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE------DIKKLDYGQHVVSGTPGRVLDMIKR-------- 162 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccch------hhhhhcccceEeeCCCchHHHHHHh--------
Confidence 5899999864 456666555544433566666666554321 11111 1223444444333322110
Q ss_pred hhhhhhcccCCCccccccccccceeeccccccccCc--hHHHHHHHHHhc-cCeEEEEeccC
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTP 636 (1236)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTP 636 (1236)
..|.-..-.++|||||..+-|. ..+.+...+.|+ .-..+++|+|-
T Consensus 163 --------------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl 210 (400)
T KOG0328|consen 163 --------------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL 210 (400)
T ss_pred --------------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC
Confidence 1244455678999999987554 478888888887 67788899994
No 181
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.12 E-value=1.3e+02 Score=37.89 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccc-cccchhhhccCccEEEEeHHHHhh
Q 000892 509 ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD-TSIMDISELVGADIVLTTYDVLKE 565 (1236)
Q Consensus 509 Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~-~~~~~~~~l~~~DVVITTYe~L~~ 565 (1236)
=.....+|+.+.+| ..++..+++....+... ......-.-.++||+|.|- ++.+
T Consensus 270 Gte~~~e~l~~~fp--~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~-~i~k 324 (505)
T TIGR00595 270 GTEQVEEELAKLFP--GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQ-MIAK 324 (505)
T ss_pred cHHHHHHHHHhhCC--CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCc-cccc
Confidence 35777899999987 78999999875433210 1111222335688988765 3443
No 182
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=25.63 E-value=92 Score=35.97 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=15.7
Q ss_pred cceeecCCCcchHHHHHHHHH
Q 000892 359 GGILADEMGLGKTVELLACIF 379 (1236)
Q Consensus 359 GGILADEMGLGKTvq~LALIl 379 (1236)
+-+|--+.|.|||..+-++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 446777899999988766543
No 183
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=25.58 E-value=61 Score=34.38 Aligned_cols=65 Identities=20% Similarity=0.456 Sum_probs=34.7
Q ss_pred cccccch--HHHHHHHHHH---HHHHHHHHHHHHHhhhhhcCCChhhhhh------ccccccc---ccCC-CCCcccccc
Q 000892 1060 RSISGLT--YHIQSSLDQL---EASRKTLLDRLLEIDQTMEKPKEEDMDR------MRHCRIC---YGVG-DGPICVHCE 1124 (1236)
Q Consensus 1060 ~~~~gL~--~~l~~~ld~L---~~~R~~~~~~l~~L~~~~~~p~~~~Ve~------a~~C~~C---~~~~-~~~~C~~C~ 1124 (1236)
....||+ |+|+..+.+| ++-|+.++.+--+=++.-.-|+---|-+ ..+|-+| -.+. +|..|+-|-
T Consensus 103 eE~kGlKKFflLS~R~r~LiiKHKVrNe~v~~Wf~EeEvyGmpKi~~iika~tLsk~~hcilCtvCe~r~w~g~~CPKCG 182 (200)
T PF12387_consen 103 EESKGLKKFFLLSGRVRNLIIKHKVRNETVASWFGEEEVYGMPKIITIIKAATLSKSKHCILCTVCEGREWKGGNCPKCG 182 (200)
T ss_pred hhhcCcceeeeehhHHHHHHHHhHhhhHHHHHHcccccccCcchhhhhhhHHhccCCCceEEEeeeecCccCCCCCCccc
Confidence 3455666 8888888888 5667777766533222212233222222 2344444 3332 566687773
No 184
>PLN03025 replication factor C subunit; Provisional
Probab=25.10 E-value=97 Score=36.23 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=34.8
Q ss_pred ccceeeccccccccCchHH-HHHHHHHhccCeEEEEeccCCCCChhhhhhhhhccCCCCCC
Q 000892 598 FWWRICLDEAQMVESNAAA-ATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1236)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk-~~kal~~L~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~ 657 (1236)
.|..||+||+|++-...-. ..+.+.......+++++.++...-+..|-+-...+...++.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~ 159 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS 159 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCC
Confidence 5889999999998432211 11112222455678898887766555565554444444433
No 185
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=25.08 E-value=2.5e+02 Score=35.78 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.1
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 000892 361 ILADEMGLGKTVELLACIFA 380 (1236)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1236)
|+.=+.|.|||..+.++.-.
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 56668999999988887654
No 186
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=24.92 E-value=34 Score=40.34 Aligned_cols=40 Identities=30% Similarity=0.233 Sum_probs=29.4
Q ss_pred cceeeccccccccCchHHHHHH-HHHhccCeEEEEeccCCCCCh
Q 000892 599 WWRICLDEAQMVESNAAAATEM-ALRLYAKHRWCITGTPIQRKL 641 (1236)
Q Consensus 599 w~rVILDEAH~IKN~~Sk~~ka-l~~L~a~~RwlLTGTPiqN~L 641 (1236)
=..|||||||+ .+..+-+| +.+|-...+..+||.+.|=+|
T Consensus 244 dAfVIlDEaQN---tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 244 DAFVILDEAQN---TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CeEEEEecccc---cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 35799999997 34344443 446788899999999988554
No 187
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=24.89 E-value=1.2e+02 Score=36.99 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=17.5
Q ss_pred cceeecCCCcchHHHHHHHHHH
Q 000892 359 GGILADEMGLGKTVELLACIFA 380 (1236)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~ 380 (1236)
+=|+.-..|.|||..+.++...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4467788999999998887654
No 188
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=24.70 E-value=52 Score=39.28 Aligned_cols=40 Identities=25% Similarity=0.165 Sum_probs=29.3
Q ss_pred ccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCCC
Q 000892 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1236)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiqN 639 (1236)
.=..||+||||++-- ...-..+.+.-...++++||-|-|-
T Consensus 351 ~~~FiIIDEaQNLTp--heikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 351 PDSFIIIDEAQNLTP--HELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred ccceEEEehhhccCH--HHHHHHHHhccCCCEEEEcCCHHHc
Confidence 335799999999853 2333455566778899999999874
No 189
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=24.30 E-value=1.8e+02 Score=38.74 Aligned_cols=100 Identities=7% Similarity=-0.088 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHHhhhhhccchhhhhhhHhhHHHHHHhHhHHHHHHHHHHH----HHH-HHHhh--------------
Q 000892 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA----VVE-EHSED-------------- 862 (1236)
Q Consensus 802 t~eelL~~Ll~~~~~e~eea~rkvLifsq~la~L~iIe~~l~~a~~~y~~~l~----~~~-~~~~~-------------- 862 (1236)
|.++-...+++.+. ++.+.++-+||.+.....-..|...|.+....+ .+|. ..+ +.+.+
T Consensus 407 t~~~K~~Aii~ei~-~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h-~vLNAk~~e~EA~IIa~AG~~GaVTIATNMA 484 (925)
T PRK12903 407 TKHAKWKAVVKEVK-RVHKKGQPILIGTAQVEDSETLHELLLEANIPH-TVLNAKQNAREAEIIAKAGQKGAITIATNMA 484 (925)
T ss_pred cHHHHHHHHHHHHH-HHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCc-eeecccchhhHHHHHHhCCCCCeEEEecccc
Confidence 55666666666554 344567899999888888888887776543221 1221 111 11111
Q ss_pred -ccCCCC--------cceeEEecCCcCCcchhhhhh-hhhccCCCCceEEE
Q 000892 863 -FRLDPL--------LNIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSE 903 (1236)
Q Consensus 863 -fr~D~~--------~~lh~~~Nl~dwnp~~d~QA~-R~hRiGQ~k~V~Vy 903 (1236)
--+|.. --||++-.-..=+.-.|+|.. ||+|-|.+=....|
T Consensus 485 GRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 485 GRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 112211 123554443334556899999 99999987554444
No 190
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.69 E-value=1.3e+02 Score=37.77 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=56.2
Q ss_pred cEEEEeCC-chHHHHHHHHHhcC--CCCCCeEEEEcCCCcccccccccchhhhccCccEEEEeHHHHhhhcccCCCCccc
Q 000892 500 ATLIVCPA-PILAQWDAEITRHT--RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~--~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYe~L~~d~~~~~~~~~~ 576 (1236)
..+|+.|. .|..|=..|..+.. +..++++.-+....... ..........||++|.|--.+...+.....
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~----qk~a~~~~~k~dili~TP~ri~~~~~~~~~---- 282 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPS----QKPAFLSDEKYDILISTPMRIVGLLGLGKL---- 282 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchh----hccchhHHHHHHHHhcCHHHHHHHhcCCCc----
Confidence 57999997 57789999999987 43344443333332111 111233445789999998888776542110
Q ss_pred chhhhhhcccCCCccccccccccceeeccccccccCc
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1236)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1236)
.-.|..++| +|+|||.++-++
T Consensus 283 --------------~idl~~V~~--lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 283 --------------NIDLSKVEW--LVVDEADLLFEP 303 (593)
T ss_pred --------------cchhheeee--EeechHHhhhCh
Confidence 012455555 788999999887
No 191
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=23.65 E-value=1.4e+02 Score=38.91 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.6
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCC
Q 000892 499 GATLIVCPAP-ILAQWDAEITRHTRP 523 (1236)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~ 523 (1236)
+|+|||+|.- +..||.+|++.|+|.
T Consensus 55 ~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 55 RPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 5899999986 557999999999973
No 192
>PF13871 Helicase_C_4: Helicase_C-like
Probab=23.64 E-value=63 Score=37.34 Aligned_cols=55 Identities=9% Similarity=-0.107 Sum_probs=40.5
Q ss_pred CCcceeEEecCCcCCcchhhhhh-hhhccCCCCceEEEEcccCCcc-cccchhHhhhhc
Q 000892 867 PLLNIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSI-ETCDENARKCQR 923 (1236)
Q Consensus 867 ~~~~lh~~~Nl~dwnp~~d~QA~-R~hRiGQ~k~V~VyRlit~~Ti-ee~i~~~~k~~~ 923 (1236)
.-+++|+++-+. |......|-. |+||-||..+. +|++++.+.. |.+...+..++.
T Consensus 86 qr~Rv~i~le~p-wsad~aiQ~~GR~hRsnQ~~~P-~y~~l~t~~~gE~Rfas~va~rL 142 (278)
T PF13871_consen 86 QRRRVHITLELP-WSADKAIQQFGRTHRSNQVSAP-EYRFLVTDLPGERRFASTVARRL 142 (278)
T ss_pred CCceEEEEeeCC-CCHHHHHHHhccccccccccCC-EEEEeecCCHHHHHHHHHHHHHH
Confidence 457888888887 9999999999 99999998875 5666666555 555555554443
No 193
>PHA00673 acetyltransferase domain containing protein
Probab=23.44 E-value=1.1e+02 Score=32.43 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=36.1
Q ss_pred ccceeeccccccccCchHHHHHHHHHh---ccCeEEEEeccCCCCChh
Q 000892 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLD 642 (1236)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~L~ 642 (1236)
.-+-|++|+.|+=+.-.++..+.+... ..-++|-+|+||-.|.++
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 345789999999888887777766653 467899999999999764
No 194
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=23.35 E-value=1.6e+02 Score=39.61 Aligned_cols=56 Identities=30% Similarity=0.535 Sum_probs=33.4
Q ss_pred EEEEeCCc-hHHHHHHHHHhcCCCCCCeE-EEEcCCCcccccccccchhhhc-cCccEEEEeHHHH
Q 000892 501 TLIVCPAP-ILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVL 563 (1236)
Q Consensus 501 tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V-~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYe~L 563 (1236)
.||+||.- +..|=.+++.+|+.+-++++ .+|.|..... ....+ ...+|||.|-+.+
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~-------qiaelkRg~eIvV~tpGRm 499 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ-------QIAELKRGAEIVVCTPGRM 499 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH-------HHHHHhcCCceEEeccchh
Confidence 68999985 66676666666654435554 5666665432 22222 2367888875544
No 195
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.53 E-value=1e+02 Score=40.57 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=37.3
Q ss_pred cccceeeccccccccCchHHHHHHHHHh---ccCeEEEEeccCCCCChhhhhhhhhccCCCCCCC
Q 000892 597 IFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1236)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f~~ 658 (1236)
-.|.++||||+|++.+.. ....++.| ....+++|+.|=.+.=+.-|.+-...+...++..
T Consensus 118 gr~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~ 180 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPA 180 (830)
T ss_pred CCceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCH
Confidence 368899999999995432 22233334 4567889988866655555555544444444443
No 196
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=21.41 E-value=47 Score=40.37 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=28.4
Q ss_pred ccCeEEEEeccCCCCChhhhhhhhhccCCCCC
Q 000892 625 YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1236)
Q Consensus 625 ~a~~RwlLTGTPiqN~L~DL~sLL~FL~p~~f 656 (1236)
+.++-.+.||||+.|.+.++|++-++|.++.+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 45677899999999999999999999999753
No 197
>CHL00181 cbbX CbbX; Provisional
Probab=20.38 E-value=1.4e+02 Score=34.48 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=15.2
Q ss_pred eeecCCCcchHHHHHHHHH
Q 000892 361 ILADEMGLGKTVELLACIF 379 (1236)
Q Consensus 361 ILADEMGLGKTvq~LALIl 379 (1236)
+|-=..|.|||..+-++..
T Consensus 63 ll~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6677899999998877653
No 198
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=20.26 E-value=5.6e+02 Score=34.29 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=41.0
Q ss_pred cCccEEEEeHHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccccccccCchHHHHHHHHHhc----c
Q 000892 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY----A 626 (1236)
Q Consensus 551 ~~~DVVITTYe~L~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~----a 626 (1236)
....|++.|-..+..|+-. .-+.--....||+||||++-... .-+-.++..+ .
T Consensus 6 ~~ggi~~~T~rIl~~DlL~----------------------~ri~~~~itgiiv~~Ahr~~~~~-~eaFI~rlyr~~n~~ 62 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT----------------------GIIPPELITGILVLRADRIIESS-QEAFILRLYRQKNKT 62 (814)
T ss_pred hcCCEEEEechhhHhHHhc----------------------CCCCHHHccEEEEeecccccccc-cHHHHHHHHHHhCCC
Confidence 3456888899999888631 01222345689999999996433 3333334433 3
Q ss_pred CeEEEEeccCCC
Q 000892 627 KHRWCITGTPIQ 638 (1236)
Q Consensus 627 ~~RwlLTGTPiq 638 (1236)
.+..++|..|-.
T Consensus 63 gfIkafSdsP~~ 74 (814)
T TIGR00596 63 GFIKAFSDNPEA 74 (814)
T ss_pred cceEEecCCCcc
Confidence 456788888864
No 199
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=20.14 E-value=1.9e+02 Score=32.65 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=18.3
Q ss_pred cEEEEeCCchHHHHHHHHHhcCC
Q 000892 500 ATLIVCPAPILAQWDAEITRHTR 522 (1236)
Q Consensus 500 ~tLIV~P~SLl~QW~~Ei~k~~~ 522 (1236)
=+-+|||++++.|=.+-+...+.
T Consensus 72 LvrviVpk~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 72 LVRVIVPKALLEQMRQMLRSRLG 94 (229)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHH
Confidence 36789999999998888777653
No 200
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=20.03 E-value=91 Score=39.91 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=32.1
Q ss_pred cccceeeccccccccCchHHHHHHHHHhccCeEEEEeccCCC
Q 000892 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1236)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPiq 638 (1236)
..+++||+|||-|+-. ....+.+..++...|++|.|=|-|
T Consensus 258 l~~dvlIiDEaSMvd~--~l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 258 LPLDVLVVDEASMVDL--PLMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred CcccEEEEcccccCCH--HHHHHHHHhcCCCCEEEEECChhh
Confidence 3689999999999964 355666777888899999998765
Done!