Query 000892
Match_columns 1236
No_of_seqs 407 out of 3011
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 23:32:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000892.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_22-26//hhsearch_pdb/000892hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 557.6 22.9 425 281-927 227-702 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 555.9 14.9 435 283-925 49-544 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 501.7 26.1 412 282-923 30-467 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 352.7 13.4 347 498-922 200-628 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 255.2 20.2 366 499-922 53-488 (494)
6 2fwr_A DNA repair protein RAD2 1.0 1 1 237.2 15.9 308 499-921 134-466 (472)
7 1z5z_A Helicase of the SNF2/RA 1.0 1 1 214.6 8.4 204 687-925 11-240 (271)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 206.8 21.6 351 498-916 296-756 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 199.8 20.3 349 498-914 296-754 (797)
10 3hgt_A HDA1 complex subunit 3; 1.0 1 1 187.1 5.4 196 701-921 18-249 (328)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=557.56 Aligned_cols=425 Identities=19% Similarity=0.212 Sum_probs=322.5
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 898985-7888289999999999710099999831100123678877654347666301025788755798888887546
Q 000892 281 EDLPDL-LPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFG 359 (1236)
Q Consensus 281 ~~~p~L-~~~LrPYQ~~aV~WML~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrG 359 (1236)
.++|.+ ..+|||||++||+||+...... +|
T Consensus 227 ~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~-------------------------------------------------~~ 257 (800)
T 3mwy_W 227 VQPPFIKGGELRDFQLTGINWMAFLWSKG-------------------------------------------------DN 257 (800)
T ss_dssp SCCTTCCSSCCCTHHHHHHHHHHHHHTTT-------------------------------------------------CC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCC-------------------------------------------------CC
T ss_conf 69986579975899999999999985138-------------------------------------------------99
Q ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45352988616899999999813999998421122212330235678763111145320355431112465210132353
Q 000892 360 GILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDA 439 (1236)
Q Consensus 360 GILADEMGLGKTie~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~cg~~~~~~~~~g~~v~C~~c~~ 439 (1236)
|||||+||||||+++|++|.......
T Consensus 258 ~ILademGlGKT~~ai~~i~~l~~~~------------------------------------------------------ 283 (800)
T 3mwy_W 258 GILADEMGLGKTVQTVAFISWLIFAR------------------------------------------------------ 283 (800)
T ss_dssp EEECCCTTSSTTHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC------------------------------------------------------
T ss_conf 89982787532999999999999860------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 44565557688987654036663101356544220256854432000121016898999938999098117899999984
Q 000892 440 WQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITR 519 (1236)
Q Consensus 440 w~h~~Cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k 519 (1236)
...+|+|||||.+++.||..||.+
T Consensus 284 --------------------------------------------------------~~~~~~LIV~P~sll~qW~~E~~~ 307 (800)
T 3mwy_W 284 --------------------------------------------------------RQNGPHIIVVPLSTMPAWLDTFEK 307 (800)
T ss_dssp --------------------------------------------------------SCCSCEEEECCTTTHHHHHHHHHH
T ss_pred --------------------------------------------------------CCCCCEEEEECCHHHHHHHHHHHH
T ss_conf --------------------------------------------------------779988999880389999999999
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCC-------CCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 399999719997188766554432-------1001000376699985788862004677776650334321024787300
Q 000892 520 HTRPGSLKTCIYEGARNSSLSDTS-------IMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPT 592 (1236)
Q Consensus 520 ~~~~~~L~V~vy~G~~~~~~~~~~-------~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kr~~~~~s 592 (1236)
|+| .+++.+|+|....+..... ........+++|+||||+++.++..
T Consensus 308 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~------------------------ 361 (800)
T 3mwy_W 308 WAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA------------------------ 361 (800)
T ss_dssp HST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH------------------------
T ss_pred HCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHH------------------------
T ss_conf 779--964999827777788988877622630013445667889906999986499------------------------
Q ss_pred CCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 00023212055056332468047999999972147199995468889924655111001799999746779886188768
Q 000892 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYEN 672 (1236)
Q Consensus 593 ~L~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~l~~~~~f~~~~~~pi~~ 672 (1236)
.|..+.|++||+||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|+.|+....|..... ..
T Consensus 362 ~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~---~~ 438 (800)
T 3mwy_W 362 ELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ---DE 438 (800)
T ss_dssp HHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC---TT
T ss_pred HHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC---CH
T ss_conf 983377325641344441471019999999752243897227857799999999999858663674344232223---14
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 86005899999997666413432223568999971899993299999999999999988799999999998775206999
Q 000892 673 GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPG 752 (1236)
Q Consensus 673 g~~~~~~~L~~lL~~imLRRtK~dV~~el~LPpk~e~vv~i~lS~~Qk~lY~~l~~~~~~~~~~~~~~~~~~~~~r~~~g 752 (1236)
.....+..|+.+++|+|+||+|.+|... |||+.+.+++|+|++.|+.+|..+.......+...
T Consensus 439 ~~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~--------------- 501 (800)
T 3mwy_W 439 EQEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNILTKNYSALTAG--------------- 501 (800)
T ss_dssp HHHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHHHHCCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC---------------
T ss_conf 6899999999997577753208766431--68827999970799999999999999999998610---------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCC-------------HHHHHHHHHHHHH
Q ss_conf 888877667201045599999999999997169877776633346----99999-------------9999999999989
Q 000892 753 HASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ----QSPLS-------------MDEILMVLIGKTK 815 (1236)
Q Consensus 753 ~v~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~----~~~~t-------------meeiL~~Ll~~~~ 815 (1236)
.......+++.+++||++|+||.++........ ....+ .-.+|..++.+..
T Consensus 502 ------------~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~ 569 (800)
T 3mwy_W 502 ------------AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK 569 (800)
T ss_dssp -----------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred ------------CCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf ------------35454469999999998735865423557899886156655577888876642769999999999975
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHCCCCCCC--------------------C
Q ss_conf 8635511505654624755999998676879799---99--999999997200689776--------------------6
Q 000892 816 IEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVVEEHSEDFRLDPLL--------------------N 870 (1236)
Q Consensus 816 ~e~eea~rkvlvfsq~la~L~iLe~~l~~a~~~Y---~~--~l~~~~e~~~~fr~D~~~--------------------~ 870 (1236)
. ..+++|||+|+..++++|+..+......| .+ ....+++.++.|+..... .
T Consensus 570 ~----~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~ 645 (800)
T 3mwy_W 570 K----DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTAD 645 (800)
T ss_dssp T----TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCC
T ss_pred H----CCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 2----798189996359999999999986799789996999999999999996089998259997454456787760163
Q ss_pred EEEEECCCCCCCCHHHHHH-HHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 0477527967813033454-53105888763899710179621020457531013545
Q 000892 871 IHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1236)
Q Consensus 871 lh~~~Nl~dwnpa~d~QA~-R~hRiGQ~~~V~vyrlit~~TiEE~i~~~~k~~~~~~~ 927 (1236)
.+++++. +|||+.+.||+ |||||||+++|.||||++++|+||+|++.+++|+.-..
T Consensus 646 ~VI~~D~-~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~ 702 (800)
T 3mwy_W 646 TVVIFDS-DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEY 702 (800)
T ss_dssp EEEESSC-CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 6899468-78811689999998855898637999986199899999999999888999
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=555.91 Aligned_cols=435 Identities=18% Similarity=0.247 Sum_probs=322.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 89857888289999999999710099999831100123678877654347666301025788755798888887546453
Q 000892 283 LPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGIL 362 (1236)
Q Consensus 283 ~p~L~~~LrPYQ~~aV~WML~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGGIL 362 (1236)
.|.+..+|||||++||.||+....+... ...+||||
T Consensus 49 ~p~l~~~LrpyQ~~gv~~l~~~~~~~~~--------------------------------------------~~~~g~IL 84 (644)
T 1z3i_X 49 DPVLSKVLRPHQREGVKFLWDCVTGRRI--------------------------------------------ENSYGCIM 84 (644)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHTTSSS--------------------------------------------TTCCEEEE
T ss_pred CHHHHHCCCHHHHHHHHHHHHHHHCCCC--------------------------------------------CCCCCEEE
T ss_conf 8564003519999999999984233544--------------------------------------------58887596
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52988616899999999813999998421122212330235678763111145320355431112465210132353445
Q 000892 363 ADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQH 442 (1236)
Q Consensus 363 ADEMGLGKTie~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~cg~~~~~~~~~g~~v~C~~c~~w~h 442 (1236)
|||||||||+++|++|.......+.
T Consensus 85 ad~mGlGKT~~~i~~i~~l~~~~~~------------------------------------------------------- 109 (644)
T 1z3i_X 85 ADEMGLGKTLQCITLIWTLLKQSPD------------------------------------------------------- 109 (644)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHCCTT-------------------------------------------------------
T ss_pred EECCCCHHHHHHHHHHHHHHHHCCC-------------------------------------------------------
T ss_conf 1078742999999999999974866-------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 65557688987654036663101356544220256854432000121016898999938999098117899999984399
Q 000892 443 ADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTR 522 (1236)
Q Consensus 443 ~~Cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~~ 522 (1236)
.....+++|||||.+++.||.+||.+|++
T Consensus 110 ---------------------------------------------------~~p~~~~~LiV~P~sll~qW~~E~~~~~~ 138 (644)
T 1z3i_X 110 ---------------------------------------------------CKPEIDKVIVVSPSSLVRNWYNEVGKWLG 138 (644)
T ss_dssp ---------------------------------------------------SSCSCSCEEEEECHHHHHHHHHHHHHHHG
T ss_pred ---------------------------------------------------CCCCCCCEEEEECHHHHHHHHHHHHHHCC
T ss_conf ---------------------------------------------------56777857999658998879999999758
Q ss_pred CCCCEEEEECCCCCCCCCCC-C-CC-HHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99971999718876655443-2-10-010003766999857888620046777766503343210247873000002321
Q 000892 523 PGSLKTCIYEGARNSSLSDT-S-IM-DISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFW 599 (1236)
Q Consensus 523 ~~~L~V~vy~G~~~~~~~~~-~-~~-~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kr~~~~~s~L~~i~w 599 (1236)
. .+.++.++|......... . .. .......++|+||||++++.+.. .|....|
T Consensus 139 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~------------------------~l~~~~~ 193 (644)
T 1z3i_X 139 G-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE------------------------VLHKGKV 193 (644)
T ss_dssp G-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT------------------------TTTTSCC
T ss_pred C-CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH------------------------HHHCCCC
T ss_conf 8-72599980898899999999998733777787579963899876578------------------------7504886
Q ss_pred CEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC-----
Q ss_conf 205505633246804799999997214719999546888992465511100179999974677988618876886-----
Q 000892 600 WRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGD----- 674 (1236)
Q Consensus 600 ~rVILDEAH~iKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~l~~~~~f~~~~~~pi~~g~----- 674 (1236)
++||+||||++||..++.++++..+++.+||+|||||+||++.|||++++||.|++|++...|.+.|..|+..+.
T Consensus 194 ~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~ 273 (644)
T 1z3i_X 194 GLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADAS 273 (644)
T ss_dssp CEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCC
T ss_pred CEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCC
T ss_conf 57998786224780459999998555673799846734588999999998618876899999998632615416776778
Q ss_pred -------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------0058999999976664134322235689999718999932999999999999999887999999999987752
Q 000892 675 -------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILK 747 (1236)
Q Consensus 675 -------~~~~~~L~~lL~~imLRRtK~dV~~el~LPpk~e~vv~i~lS~~Qk~lY~~l~~~~~~~~~~~~~~~~~~~~~ 747 (1236)
...+..|+.++.++|+||+|.++... ||++.+.+++|+||+.|+++|+.+.+.....
T Consensus 274 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~--LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~-------------- 337 (644)
T 1z3i_X 274 DKDRAAGEQKLQELISIVNRCLIRRTSDILSKY--LPVKIEQVVCCNLTPLQKELYKLFLKQAKPV-------------- 337 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT--SCCEEEEEEEECCCHHHHHHHHHHHHHHCGG--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH--------------
T ss_conf 889999999999999998899987108767642--7983699998379989999999999989999--------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-------C----CCC---------CCCCHHHHH
Q ss_conf 06999888877667201045599999999999997169877776633-------3----469---------999999999
Q 000892 748 RNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR-------S----LQQ---------SPLSMDEIL 807 (1236)
Q Consensus 748 r~~~g~v~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~-------~----l~~---------~~~tmeeiL 807 (1236)
... ..+ .....++..+++|||+|+||.++..... . ... .......++
T Consensus 338 ~~~-----~~g--------~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l 404 (644)
T 1z3i_X 338 ESL-----QTG--------KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 404 (644)
T ss_dssp GSS-----CTT--------CCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHH
T ss_pred HHH-----HCC--------CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 987-----627--------6214599999999999579998888874154003557764542111000570117489999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHCCCCCCCC------------
Q ss_conf 999999898635511505654624755999998676879799---999--999999972006897766------------
Q 000892 808 MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KEA--MAVVEEHSEDFRLDPLLN------------ 870 (1236)
Q Consensus 808 ~~Ll~~~~~e~eea~rkvlvfsq~la~L~iLe~~l~~a~~~Y---~~~--l~~~~e~~~~fr~D~~~~------------ 870 (1236)
..++...... ..++++||+|+..++++|+..+......| .+. ...+++.++.|+.+....
T Consensus 405 ~~ll~~~~~~---~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~ 481 (644)
T 1z3i_X 405 DYILAMTRTT---TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGC 481 (644)
T ss_dssp HHHHHHHHHH---CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCT
T ss_pred HHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
T ss_conf 9999998646---9987999980599999999999977997899839999999999999963999996799984455667
Q ss_pred --------EEEEECCCCCCCCHHHHHH-HHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCC
Q ss_conf --------0477527967813033454-531058887638997101796210204575310135
Q 000892 871 --------IHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVS 925 (1236)
Q Consensus 871 --------lh~~~Nl~dwnpa~d~QA~-R~hRiGQ~~~V~vyrlit~~TiEE~i~~~~k~~~~~ 925 (1236)
.++++++ +|||+.+.||+ |+|||||+++|.||||++++||||+|++++.+|+--
T Consensus 482 Glnl~~a~~Vi~~d~-~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l 544 (644)
T 1z3i_X 482 GLNLIGANRLVMFDP-DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL 544 (644)
T ss_dssp TCCCTTEEEEEECSC-CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 846523898999799-998137999988403228987269999887988999999999999999
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=501.74 Aligned_cols=412 Identities=25% Similarity=0.350 Sum_probs=324.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 98985788828999999999971009999983110012367887765434766630102578875579888888754645
Q 000892 282 DLPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGI 361 (1236)
Q Consensus 282 ~~p~L~~~LrPYQ~~aV~WML~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGGI 361 (1236)
.++.+..+|||||++|+.||+.++... +|||
T Consensus 30 ~p~~~~~~L~~~Q~~~v~~l~~~~~~~-------------------------------------------------~~~i 60 (500)
T 1z63_A 30 EPYNIKANLRPYQIKGFSWMRFMNKLG-------------------------------------------------FGIC 60 (500)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHHHHTT-------------------------------------------------CCEE
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHCC-------------------------------------------------CCEE
T ss_conf 983320033699999999999974179-------------------------------------------------9889
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35298861689999999981399999842112221233023567876311114532035543111246521013235344
Q 000892 362 LADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQ 441 (1236)
Q Consensus 362 LADEMGLGKTie~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~c~cg~~~~~~~~~g~~v~C~~c~~w~ 441 (1236)
|||+||+|||+++++++......
T Consensus 61 lad~~GlGKT~~ai~~i~~~~~~--------------------------------------------------------- 83 (500)
T 1z63_A 61 LADDMGLGKTLQTIAVFSDAKKE--------------------------------------------------------- 83 (500)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHT---------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHHHHC---------------------------------------------------------
T ss_conf 98089973899999999988755---------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 56555768898765403666310135654422025685443200012101689899993899909811789999998439
Q 000892 442 HADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHT 521 (1236)
Q Consensus 442 h~~Cv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~ 521 (1236)
...+++|||||.+++.||.+||.+|+
T Consensus 84 ------------------------------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 84 ------------------------------------------------------NELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp ------------------------------------------------------TCCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ------------------------------------------------------CCCCCEEEECCHHHHHHHHHHHHHHC
T ss_conf ------------------------------------------------------89997899903899999999999977
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 99997199971887665544321001000376699985788862004677776650334321024787300000232120
Q 000892 522 RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWR 601 (1236)
Q Consensus 522 ~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kr~~~~~s~L~~i~w~r 601 (1236)
+ .+++.+++|.... .....++|+|+||+++.++. .+....|++
T Consensus 110 ~--~~~v~~~~g~~~~----------~~~~~~~ivi~t~~~l~~~~-------------------------~l~~~~~~~ 152 (500)
T 1z63_A 110 P--HLRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDT-------------------------RLKEVEWKY 152 (500)
T ss_dssp T--TSCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCH-------------------------HHHTCCEEE
T ss_pred C--CCEEEEEECCCHH----------CCCCCCCEEEEEHHHHHCCC-------------------------HHCCCCCCE
T ss_conf 9--9559997267021----------00357768996379972630-------------------------211787287
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 55056332468047999999972147199995468889924655111001799999746779886188768860058999
Q 000892 602 ICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFT 681 (1236)
Q Consensus 602 VILDEAH~iKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~l~~~~~f~~~~~~pi~~g~~~~~~~L 681 (1236)
||+||||+++|..++.++++..+++.++|+|||||++|++.|||++++||.|++|++...|...|..|+..++....+.|
T Consensus 153 vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l 232 (500)
T 1z63_A 153 IVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEEL 232 (500)
T ss_dssp EEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99808410178768999999960047189974677779999999999985877579989999985251114668899999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99997666413432223568999971899993299999999999999988799999999998775206999888877667
Q 000892 682 HKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYN 761 (1236)
Q Consensus 682 ~~lL~~imLRRtK~dV~~el~LPpk~e~vv~i~lS~~Qk~lY~~l~~~~~~~~~~~~~~~~~~~~~r~~~g~v~~~~~~~ 761 (1236)
+.++.++++||+|.+......||++.+.+++++|++.|+.+|+.+.+.....+. .
T Consensus 233 ~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~--------------------~----- 287 (500)
T 1z63_A 233 KAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID--------------------S----- 287 (500)
T ss_dssp HHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTT--------------------T-----
T ss_pred HHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH--------------------H-----
T ss_conf 999766745502554241122999758999818999999999999999999998--------------------6-----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 20104559999999999999716987777663334699999999999999998986355115056546247559999986
Q 000892 762 PIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 841 (1236)
Q Consensus 762 ~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~tmeeiL~~Ll~~~~~e~eea~rkvlvfsq~la~L~iLe~~ 841 (1236)
.........++..+++|||+|+||.+...+.... .....-..+..++.+....+ ++++||+++..+++.+...
T Consensus 288 -~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~--~~s~K~~~l~~~l~~~~~~~----~k~lvF~~~~~~~~~l~~~ 360 (500)
T 1z63_A 288 -VTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSV--RRSGKMIRTMEIIEEALDEG----DKIAIFTQFVDMGKIIRNI 360 (500)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCS--TTCHHHHHHHHHHHHHHTTT----CCEEEECSCHHHHHHHHHH
T ss_pred -HHCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCHH--HCCHHHHHHHHHHHHHHCCC----CCEEEEEEHHHHHHHHHHH
T ss_conf -4232106799999999998817998843852011--11552999999999987268----8689997218899999999
Q ss_pred HHHH-H---HHHHHH--HHHHHHHHHHCCCCCCC-------------------CEEEEECCCCCCCCHHHHHH-HHHCCC
Q ss_conf 7687-9---799999--99999997200689776-------------------60477527967813033454-531058
Q 000892 842 LSQA-V---SLYKEA--MAVVEEHSEDFRLDPLL-------------------NIHLHHNLTEILPMVANCAT-ELSQNE 895 (1236)
Q Consensus 842 l~~a-~---~~Y~~~--l~~~~e~~~~fr~D~~~-------------------~lh~~~Nl~dwnpa~d~QA~-R~hRiG 895 (1236)
+... . ..+.+. ...+++.++.|+.++.. ..++.+++ +|||+...||+ |+||+|
T Consensus 361 l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~-~~~~~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 361 IEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR-WWNPAVEDQATDRVYRIG 439 (500)
T ss_dssp HHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC-CSCC---CHHHHTTTTTT
T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECC-CCCCCHHHHHHHHHHHCC
T ss_conf 9885388769997999999999999996089998779995333557774455888999589-989545899999888738
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHC
Q ss_conf 8876389971017962102045753101
Q 000892 896 QHFPGCSEKAFKIHSIETCDENARKCQR 923 (1236)
Q Consensus 896 Q~~~V~vyrlit~~TiEE~i~~~~k~~~ 923 (1236)
|+++|.||+|++++|+||++++.+.+|+
T Consensus 440 q~~~v~v~~lv~~~tiee~i~~~~~~K~ 467 (500)
T 1z63_A 440 QTRNVIVHKLISVGTLEEKIDQLLAFKR 467 (500)
T ss_dssp TTSCEEEEEEEETTSHHHHTHHHHTTCS
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9870699997748989999999999999
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=352.66 Aligned_cols=347 Identities=14% Similarity=0.135 Sum_probs=234.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 99389990981178999999843999997199971887665544321001000376699985788862004677776650
Q 000892 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1236)
.+++|||||.+++.||..||.+|+ .+++.+|+|...... .......+..++|+|+||+++.++...
T Consensus 200 ~~rvLIVvP~sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~---~~~~~~~~~~~dIvI~T~~~L~~~~~~-------- 265 (968)
T 3dmq_A 200 AERVLIIVPETLQHQWLVEMLRRF---NLRFALFDDERYAEA---QHDAYNPFDTEQLVICSLDFARRSKQR-------- 265 (968)
T ss_dssp CCCEEEECCTTTHHHHHHHHHHHS---CCCCEECCHHHHHHH---HHTTCSSSTTCSEEEECHHHHHTSTTT--------
T ss_pred CCEEEEEECHHHHHHHHHHHHHHH---CCCEEEECCCHHHHH---HHHCCCCCCCCCEEEECHHHHHHCHHH--------
T ss_conf 982999957888999999999986---998799806205554---320036445689899768998648788--------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHH---HHHHHHHH--CCCEEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 334321024787300000232120550563324680479---99999972--1471999954688899246551110017
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA---ATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1236)
Q Consensus 578 ~~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~iKN~~Sk---~~kal~~L--~a~~RwlLTGTPIqN~l~DL~sLL~FL~ 652 (1236)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|++++|+.
T Consensus 266 -------------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~ 332 (968)
T 3dmq_A 266 -------------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLD 332 (968)
T ss_dssp -------------THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHC
T ss_pred -------------HHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf -------------8876415877897444676258887542999999998625785899976876698799999998259
Q ss_pred CCCCCCHHHHHHHHCCCC---------CCC----------------------------------CCCHHHHHHHHH----
Q ss_conf 999997467798861887---------688----------------------------------600589999999----
Q 000892 653 SSPFSISRWWIEVIRDPY---------ENG----------------------------------DVGAMEFTHKFF---- 685 (1236)
Q Consensus 653 p~~l~~~~~f~~~~~~pi---------~~g----------------------------------~~~~~~~L~~lL---- 685 (1236)
|+.|++...|...+.... ..+ .......+..++
T Consensus 333 p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g 412 (968)
T 3dmq_A 333 PNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHG 412 (968)
T ss_dssp TTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 30118989999999857889999998742678998899999988420336788750362223337999999999998617
Q ss_pred -HHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf -7666413432223568999971899993299999999999999988799999999998775206999888877667201
Q 000892 686 -KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 764 (1236)
Q Consensus 686 -~~imLRRtK~dV~~el~LPpk~e~vv~i~lS~~Qk~lY~~l~~~~~~~~~~~~~~~~~~~~~r~~~g~v~~~~~~~~~~ 764 (1236)
..+++|+++..+. .+|++....+.+++++.++..|...... .+ .....
T Consensus 413 ~~~~l~r~~r~~i~---~~p~r~~~~~~l~~~~~~~~~~~~~~~~-----------------~~--------~~~~~--- 461 (968)
T 3dmq_A 413 TSRVLFRNTRNGVK---GFPKRELHTIKLPLPTQYQTAIKVSGIM-----------------GA--------RKSAE--- 461 (968)
T ss_dssp TTTTEECCCTTTCC---CCCCCCCCEEEECCCHHHHHHHHHHHHT-----------------TC--------CSSGG---
T ss_pred CCHHHHHHHHHHHC---CCCHHHEEEEECCCCHHHHHHHHHHHHH-----------------HH--------HHHHH---
T ss_conf 33265632265545---5671115752368999999999987543-----------------02--------12667---
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 045599999999999997169877776633346---99999999999999998986355115056546247559999986
Q 000892 765 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ---QSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKN 841 (1236)
Q Consensus 765 ~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~---~~~~tmeeiL~~Ll~~~~~e~eea~rkvlvfsq~la~L~iLe~~ 841 (1236)
.....|.+|......+.... .......+.+..++.. ....+++||++....++.+...
T Consensus 462 -------------~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~------~~~~k~iVF~~~~~~~~~l~~~ 522 (968)
T 3dmq_A 462 -------------DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS------HRSQKVLVICAKAATALQLEQV 522 (968)
T ss_dssp -------------GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH------TSSSCCCEECSSTHHHHHHHHH
T ss_pred -------------HHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------CCCCCEEEEECCHHHHHHHHHH
T ss_conf -------------777641085989987643331356856799999999983------7999789996959999999999
Q ss_pred HHHH----HHHHHHH--HHHHHHHHHHCCCCC--C-----------------CCEEEEECCCCCCCCHHHHHH-HHHCCC
Q ss_conf 7687----9799999--999999972006897--7-----------------660477527967813033454-531058
Q 000892 842 LSQA----VSLYKEA--MAVVEEHSEDFRLDP--L-----------------LNIHLHHNLTEILPMVANCAT-ELSQNE 895 (1236)
Q Consensus 842 l~~a----~~~Y~~~--l~~~~e~~~~fr~D~--~-----------------~~lh~~~Nl~dwnpa~d~QA~-R~hRiG 895 (1236)
+... +..+.+. ...++...+.|+.+. . ...++.+++ +|||....|+. |++|+|
T Consensus 523 L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~-p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 523 LREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL-PFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp HHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC-CSSHHHHHHHHHTTSCSS
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCEEEEECC-CCCHHHHHHHHHCCCCCC
T ss_conf 9987498389984999999999999997479976308985334316888556767999569-998789998701143079
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 887638997101796210204575310
Q 000892 896 QHFPGCSEKAFKIHSIETCDENARKCQ 922 (1236)
Q Consensus 896 Q~~~V~vyrlit~~TiEE~i~~~~k~~ 922 (1236)
|++.|.+|++++.+|+||.|+...+++
T Consensus 602 q~~~v~v~~~~~~~t~ee~i~~~~~~k 628 (968)
T 3dmq_A 602 QAHDIQIHVPYLEKTAQSVLVRWYHEG 628 (968)
T ss_dssp SCSCCEEEEEEETTSHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 985089998057771999999999867
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=255.20 Aligned_cols=366 Identities=11% Similarity=0.035 Sum_probs=208.1
Q ss_pred CCEEEEECC-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCC
Q ss_conf 938999098-1178999999843999997199971887665544321001000376699985788862004677776650
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1236)
+++|||||. +++.||.+|+.+|+..+..++..++|...... .......++|+|+||+++...+..
T Consensus 53 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~------~~~~~~~~~ivv~T~~~l~~~~~~-------- 118 (494)
T 1wp9_A 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEE------RSKAWARAKVIVATPQTIENDLLA-------- 118 (494)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHH------HHHHHHHCSEEEECHHHHHHHHHT--------
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCHHHEEEEECCCCHHH------HHHHCCCCCEEEECHHHHHHHHHC--------
T ss_conf 859999788899999999999874756111687607753355------665335798999639999999860--------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH--HHHHH-HHCCCEEEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf 3343210247873000002321205505633246804799--99999-72147199995468889924655111001799
Q 000892 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA--TEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1236)
Q Consensus 578 ~~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~iKN~~Sk~--~kal~-~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~ 654 (1236)
..+....|++||+||||.+++..+.. ...+. ..+..++|+|||||. |+..+++.++.++.+.
T Consensus 119 --------------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~ 183 (494)
T 1wp9_A 119 --------------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIE 183 (494)
T ss_dssp --------------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCC
T ss_pred --------------CCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHH
T ss_conf --------------8715654108999787566888819999999973288776999956998-8857899999850700
Q ss_pred CCCCH---HHHHHHHCCCCC-----CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHH-----H
Q ss_conf 99974---677988618876-----8860058999999976664134322235689999718999932999999-----9
Q 000892 655 PFSIS---RWWIEVIRDPYE-----NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE-----H 721 (1236)
Q Consensus 655 ~l~~~---~~f~~~~~~pi~-----~g~~~~~~~L~~lL~~imLRRtK~dV~~el~LPpk~e~vv~i~lS~~Qk-----~ 721 (1236)
..... ..+...+..+.. ...+.....+...+.+++.++.+......+ +++.. ..++..+. .
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~ 257 (494)
T 1wp9_A 184 HIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL-LESSS-----PDIPKKEVLRAGQI 257 (494)
T ss_dssp EEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCCC-----TTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCC-----CCCCHHHHHHHHHH
T ss_conf 0502678758788752787426895688588999999898999999999997355-65457-----77335578999999
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-
Q ss_conf 99999999------88799999999998775206999888877667201045599999999999997169877776633-
Q 000892 722 FYQSQHET------CVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR- 794 (1236)
Q Consensus 722 lY~~l~~~------~~~~~~~~~~~~~~~~~~r~~~g~v~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~- 794 (1236)
++..+... ....... ...+..... .........+...+..|...|.|+........
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 258 INEEMAKGNHDLRGLLLYHAM-ALKLHHAIE----------------LLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp HHHHHTTTCCSTTTHHHHHHH-HHHHHHHHH----------------HHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH-HHHHHHHHH----------------HHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 998753356311347999988-888999999----------------998525799999999998752232114556666
Q ss_pred ------C---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----
Q ss_conf ------3---------469999999999999999898635511505654624755999998676879---79999-----
Q 000892 795 ------S---------LQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAV---SLYKE----- 851 (1236)
Q Consensus 795 ------~---------l~~~~~tmeeiL~~Ll~~~~~e~eea~rkvlvfsq~la~L~iLe~~l~~a~---~~Y~~----- 851 (1236)
. ........-+.+..++.+.... ....+++||+++...++.+...+.... ..+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~ 398 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKE 398 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 50788989999998874589986999999999998436--8997599997668999999999997599807996566544
Q ss_pred ---H--HHHHHHHHHHCCCCCCC-----------------CEEEEECCCCCCCCHHHHHH-HHHCCCCCCCEEEEECCCC
Q ss_conf ---9--99999997200689776-----------------60477527967813033454-5310588876389971017
Q 000892 852 ---A--MAVVEEHSEDFRLDPLL-----------------NIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKI 908 (1236)
Q Consensus 852 ---~--l~~~~e~~~~fr~D~~~-----------------~lh~~~Nl~dwnpa~d~QA~-R~hRiGQ~~~V~vyrlit~ 908 (1236)
. ...+++..+.|+.+... ..++.++. .|||+...|+. |++|.|| +.+|+|+++
T Consensus 399 ~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~-~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~ 474 (494)
T 1wp9_A 399 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP-VPSAIRSIQRRGRTGRHMP---GRVIILMAK 474 (494)
T ss_dssp ------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC-CHHHHHHHHHHTTSCSCCC---SEEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHCCEEEEECC-CCCHHHHHHHHHHCCCCCC---CEEEEEEEC
T ss_conf 444589999999999986699469998884125887143798999289-8878999998752257788---469999956
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 96210204575310
Q 000892 909 HSIETCDENARKCQ 922 (1236)
Q Consensus 909 ~TiEE~i~~~~k~~ 922 (1236)
+|+||+++..+.+|
T Consensus 475 ~t~ee~~~~~~~~k 488 (494)
T 1wp9_A 475 GTRDEAYYWSSRQK 488 (494)
T ss_dssp TSHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHH
T ss_conf 98789999988878
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=237.21 Aligned_cols=308 Identities=13% Similarity=0.084 Sum_probs=189.8
Q ss_pred CCEEEEECC-CHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 938999098-11789999998439999971-9997188766554432100100037669998578886200467777665
Q 000892 499 GATLIVCPA-PILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~-V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1236)
+++|||||. +|+.||.+++.+| .++ +.+++|.... ..+|+|+||+.+.....
T Consensus 134 ~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~--------------~~~Ivv~T~~~l~~~~~-------- 187 (472)
T 2fwr_A 134 TPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE--------------LKPLTVSTYDSAYVNAE-------- 187 (472)
T ss_dssp SCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC--------------CCSEEEEEHHHHHHTHH--------
T ss_pred CCEEEEECCHHHHHHHHHHHHHC----CCCCEEEECCCCCC--------------CCCEEEEECHHHHHHHH--------
T ss_conf 99999987999999999999967----99636998787677--------------67789997689997799--------
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 03343210247873000002321205505633246804799999997214719999546888992465511100179999
Q 000892 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1236)
Q Consensus 577 ~~~~~r~~kr~~~~~s~L~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~l 656 (1236)
...-.|..||+||+|.+.+.... ..+..+.+.+++++||||.+++-.+
T Consensus 188 -----------------~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------- 235 (472)
T 2fwr_A 188 -----------------KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------- 235 (472)
T ss_dssp -----------------HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG-------------
T ss_pred -----------------HHCCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH-------------
T ss_conf -----------------73687778999897578976899--9997357781899932766889778-------------
Q ss_pred CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97467798861887688600589999999766641343222356899997189999329999999999999998879999
Q 000892 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1236)
Q Consensus 657 ~~~~~f~~~~~~pi~~g~~~~~~~L~~lL~~imLRRtK~dV~~el~LPpk~e~vv~i~lS~~Qk~lY~~l~~~~~~~~~~ 736 (1236)
..+..++.+++.+....++... -+++.....+.+++++.++..|..+......
T Consensus 236 ----------------------~~l~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 288 (472)
T 2fwr_A 236 ----------------------EILKEVVGGKVFELFPDSLAGK-HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ---- 288 (472)
T ss_dssp ----------------------GSHHHHTCCEEEECCHHHHTSC-CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----
T ss_pred ----------------------HHHHHHHCCEEEECCHHHHHCC-CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----
T ss_conf ----------------------9999972985765478987067-6788189999858998999999999999999----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999987752069998888776672010----45599999999999997169877776633346999999999999999
Q 000892 737 VIQRLKDNILKRNVPGHASSDALYNPIIT----HAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIG 812 (1236)
Q Consensus 737 ~~~~~~~~~~~r~~~g~v~~~~~~~~~~~----~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~tmeeiL~~Ll~ 812 (1236)
.+...........+.. ..+. .......+....+.++++++.. ...+.+..++.
T Consensus 289 --------~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~k~~~l~~~l~ 345 (472)
T 2fwr_A 289 --------FLRARGITLRRAEDFN-KIVMASGYDERAYEALRAWEEARRIAFNSK--------------NKIRKLREILE 345 (472)
T ss_dssp --------CSSSCCCTTTCCSSST-TTTTTTCCSSSSSTTTHHHHHHHHHHHSCS--------------HHHHHHHHHHH
T ss_pred --------HHHHCCCCCCCHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHCCH--------------HHHHHHHHHHH
T ss_conf --------9986475422446689-999872369889999999999999763373--------------89999999998
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------------CCEEEEE
Q ss_conf 98986355115056546247559999986768797999999999999720068977-----------------6604775
Q 000892 813 KTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-----------------LNIHLHH 875 (1236)
Q Consensus 813 ~~~~e~eea~rkvlvfsq~la~L~iLe~~l~~a~~~Y~~~l~~~~e~~~~fr~D~~-----------------~~lh~~~ 875 (1236)
. ...+++++|++....++.+...+.............+++..+.|+.+.. ...++.+
T Consensus 346 ~------~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~ 419 (472)
T 2fwr_A 346 R------HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIM 419 (472)
T ss_dssp H------TSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEE
T ss_pred H------CCCCCEEEEECCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCEEEEE
T ss_conf 5------7898389997979999999997486556289999999999999867998889985705148462028689998
Q ss_pred CCCCCCCCHHHHHH-HHHCCCCC-CCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 27967813033454-53105888-763899710179621020457531
Q 000892 876 NLTEILPMVANCAT-ELSQNEQH-FPGCSEKAFKIHSIETCDENARKC 921 (1236)
Q Consensus 876 Nl~dwnpa~d~QA~-R~hRiGQ~-~~V~vyrlit~~TiEE~i~~~~k~ 921 (1236)
+.. |+|+...|+. |++|+||. +.|.+|.+++++|+||.+....++
T Consensus 420 ~~~-~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~ 466 (472)
T 2fwr_A 420 SGS-GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKN 466 (472)
T ss_dssp CCS-SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC----------
T ss_pred CCC-CCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 999-98889999876315777998539999998199853799999987
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=214.65 Aligned_cols=204 Identities=16% Similarity=0.154 Sum_probs=147.8
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 66641343222356899997189999329999999999999998879999999999877520699988887766720104
Q 000892 687 EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITH 766 (1236)
Q Consensus 687 ~imLRRtK~dV~~el~LPpk~e~vv~i~lS~~Qk~lY~~l~~~~~~~~~~~~~~~~~~~~~r~~~g~v~~~~~~~~~~~~ 766 (1236)
.--+||+|++|..+ |||+.+.+++|+||+.|+++|+.+.+.....+.. .. ..
T Consensus 11 ~~~~rr~k~~v~~~--LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~-------------------~~-------~~ 62 (271)
T 1z5z_A 11 SSGLVPRGSHMASD--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDS-------------------VT-------GI 62 (271)
T ss_dssp -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTT-------------------CC-------HH
T ss_pred CCCCCCCHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH-------------------CC-------CC
T ss_conf 55641648778751--9997799998189999999999999999999974-------------------03-------52
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 5599999999999997169877776633346999999999999999989863551150565462475599999867687-
Q 000892 767 AEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA- 845 (1236)
Q Consensus 767 ~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~tmeeiL~~Ll~~~~~e~eea~rkvlvfsq~la~L~iLe~~l~~a- 845 (1236)
.....+++.+++|||+|+||.+...+.. . ......-+.|..++.+....+ ++++||+|+..++++|+..+...
T Consensus 63 ~~~~~~l~~l~~Lrq~~~hP~l~~~~~~-~-~~~s~K~~~L~~ll~~~~~~~----~kvlIFs~~~~~~~~l~~~L~~~~ 136 (271)
T 1z5z_A 63 KRKGMILSTLLKLKQIVDHPALLKGGEQ-S-VRRSGKMIRTMEIIEEALDEG----DKIAIFTQFVDMGKIIRNIIEKEL 136 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHCSCC-C-STTCHHHHHHHHHHHHHHHTT----CCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHCCCCC-C-CCCCHHHHHHHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 1288999999999998489988468732-2-346899999999999998679----969999551999999999998733
Q ss_pred HH---HHHHH--HHHHHHHHHHCCCCCCCC-------------------EEEEECCCCCCCCHHHHHH-HHHCCCCCCCE
Q ss_conf 97---99999--999999972006897766-------------------0477527967813033454-53105888763
Q 000892 846 VS---LYKEA--MAVVEEHSEDFRLDPLLN-------------------IHLHHNLTEILPMVANCAT-ELSQNEQHFPG 900 (1236)
Q Consensus 846 ~~---~Y~~~--l~~~~e~~~~fr~D~~~~-------------------lh~~~Nl~dwnpa~d~QA~-R~hRiGQ~~~V 900 (1236)
.. .+.+. ...+++.++.|+.++-.. .++.+++ +|||+.+.||+ |+||+||+++|
T Consensus 137 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~-~wnp~~~~Q~~gR~~R~Gq~~~v 215 (271)
T 1z5z_A 137 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR-WWNPAVEDQATDRVYRIGQTRNV 215 (271)
T ss_dssp CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSC-CSCTTTC--------------CC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECC-CCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 98479997999999999999983289999789972235158867644899999799-99851899999852323899856
Q ss_pred EEEECCCCCCCCCCCHHHHHHHCCC
Q ss_conf 8997101796210204575310135
Q 000892 901 CSEKAFKIHSIETCDENARKCQRVS 925 (1236)
Q Consensus 901 ~vyrlit~~TiEE~i~~~~k~~~~~ 925 (1236)
.||+|++++||||+|++++.+|+--
T Consensus 216 ~v~~li~~~TiEe~i~~~~~~K~~l 240 (271)
T 1z5z_A 216 IVHKLISVGTLEEKIDQLLAFKRSL 240 (271)
T ss_dssp EEEEEEETTSHHHHHHHHHHHCHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9999854988999999999999999
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=206.76 Aligned_cols=351 Identities=11% Similarity=0.030 Sum_probs=181.7
Q ss_pred CCCEEEEECCC-HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 99389990981-17899999984399999719997188766554432100100037669998578886200467777665
Q 000892 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1236)
.+++|||||.. |+.||.+++.++++...+++..++|....... .......++|+|+||+.+...+...
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~-----~~~~~~~~~IvI~Tp~~L~~~l~~~------ 364 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----C-----CHHHHHHCSEEEECHHHHHHHHHSS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH-----HHHHCCCCCEEEECHHHHHHHHHCC------
T ss_conf 98599996989999999999999712169559999799631257-----8974169999994499999998717------
Q ss_pred CHHHHHHCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCHHHHHHHHHHHC--------CCEEEEEECCCCCCCHHHHH--
Q ss_conf 033432102478730000-0232120550563324680479999999721--------47199995468889924655--
Q 000892 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDDLY-- 645 (1236)
Q Consensus 577 ~~~~~r~~kr~~~~~s~L-~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~--------a~~RwlLTGTPIqN~l~DL~-- 645 (1236)
.+ ..-.|.+||+||||++.+..+....+...+. ..++++|||||.+++..++.
T Consensus 365 ----------------~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~ 428 (936)
T 4a2w_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 428 (936)
T ss_dssp ----------------SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf ----------------6453367879999873135998669999999999863137886739986388554540208999
Q ss_pred --------HHHHCCCCC-CCCCHHHHHHHHCCCCCCC------CC-CH-------HHHHHHHHHHHHH------------
Q ss_conf --------111001799-9997467798861887688------60-05-------8999999976664------------
Q 000892 646 --------GLLRFLKSS-PFSISRWWIEVIRDPYENG------DV-GA-------MEFTHKFFKEIMC------------ 690 (1236)
Q Consensus 646 --------sLL~FL~p~-~l~~~~~f~~~~~~pi~~g------~~-~~-------~~~L~~lL~~imL------------ 690 (1236)
.+++.-... .......+...+..|.... .. .. +..++.++..++-
T Consensus 429 ~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~ 508 (936)
T 4a2w_A 429 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDF 508 (936)
T ss_dssp HHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CC
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999854971553465448999875367762377336556757999999999999999998876655532022332
Q ss_pred ----------HCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH------------------HHHHH
Q ss_conf ----------13432223568999971899993299999999999999988799999------------------99999
Q 000892 691 ----------RSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV------------------IQRLK 742 (1236)
Q Consensus 691 ----------RRtK~dV~~el~LPpk~e~vv~i~lS~~Qk~lY~~l~~~~~~~~~~~------------------~~~~~ 742 (1236)
...+.... ..+|. ...+..+|..+... ....... +..+.
T Consensus 509 g~~~y~~~l~~l~k~~~~--~~l~~----------~~~~~~~~~~l~~~-~~~l~~~~~al~i~~~~~~~~~~~~l~~~~ 575 (936)
T 4a2w_A 509 GTQNYEHWIVVTQRKCRL--LQLED----------KEEESRICRALFIC-TEHLRKYNDALIISEDARIIDALSYLTEFF 575 (936)
T ss_dssp SSHHHHHHHHHHHHHHHH--CCCSC----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH--HCCCC----------CCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 257799999999998877--40553----------21035799999999-999999888875002042888999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87752069998888776672010455999999999999971698777766333469999999999999999898635511
Q 000892 743 DNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEAL 822 (1236)
Q Consensus 743 ~~~~~r~~~g~v~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~tmeeiL~~Ll~~~~~e~eea~ 822 (1236)
...... +. ++ ....-...+...+..|...+..|...+ ..-+.|..++.+... ....
T Consensus 576 ~~~~~~---------~~-~~-~e~~l~~~~~~~~~~l~~~~~~~~~~~-----------~K~~~L~~lL~~~~~--~~~~ 631 (936)
T 4a2w_A 576 TNVKNG---------PY-TE-LEQHLTAKFQEKEPELIALSKDETNEN-----------PKLEELVCILDDAYR--YNPQ 631 (936)
T ss_dssp HHHHHT---------TC-CH-HHHHHHHHHHHHHHHHHHHHTSTTCCC-----------HHHHHHHHHHHHTTT--SCTT
T ss_pred HHHHHC---------CC-CH-HHHHHHHHHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHHC--CCCC
T ss_conf 987632---------58-87-899999989999999997640567789-----------799999999999853--5899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH--HHHHHHHHHCCC-CCC----------------
Q ss_conf 50565462475599999867687---------------97999999--999999720068-977----------------
Q 000892 823 RKLVMALNGLAGIALIEKNLSQA---------------VSLYKEAM--AVVEEHSEDFRL-DPL---------------- 868 (1236)
Q Consensus 823 rkvlvfsq~la~L~iLe~~l~~a---------------~~~Y~~~l--~~~~e~~~~fr~-D~~---------------- 868 (1236)
++++||++...+++.|...+... ...+.+.+ ..+.+.++.|+. +..
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp 711 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHCCCCCH
T ss_conf 74999969799999999998637353666616996578765678889999999999863159815999807264277605
Q ss_pred -CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCH
Q ss_conf -660477527967813033454531058887638997101796210204
Q 000892 869 -LNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1236)
Q Consensus 869 -~~lh~~~Nl~dwnpa~d~QA~R~hRiGQ~~~V~vyrlit~~TiEE~i~ 916 (1236)
...++.|++. |||....|+. .| ||.+++.+|.|++.+|+||++.
T Consensus 712 ~v~~VI~yD~p-~s~~~~iQr~--GR-GR~~~g~vi~Li~~~t~ee~~~ 756 (936)
T 4a2w_A 712 QCNLVVLYEYS-GNVTKMIQVR--GR-GRAAGSKCILVTSKTEVVENEK 756 (936)
T ss_dssp CCSEEEEESCC-SCSHHHHCC----------CCCEEEEESCHHHHHHHH
T ss_pred HCCEEEEECCC-CCHHHHHHHC--CC-CCCCCCEEEEEEECCCHHHHHH
T ss_conf 58989993899-9889999964--87-7888877999986988999999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=199.77 Aligned_cols=349 Identities=12% Similarity=0.042 Sum_probs=175.7
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCC
Q ss_conf 9938999098-117899999984399999719997188766554432100100037669998578886200467777665
Q 000892 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1236)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~~~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1236)
.+++|||||. ++..||.+++.++++...+++..++|....... .......++|+|+||+.+...+...
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~~~Ivv~Tp~~l~~~l~~~------ 364 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C-----HHHHHHTCSEEEECHHHHHHHHHSS------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH-----HHHHHCCCCEEEECHHHHHHHHHHC------
T ss_conf 99699996989999999999998614379469999699623246-----9974079999997669999999826------
Q ss_pred CHHHHHHCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCHHHHHHHHHHHC--------CCEEEEEECCCCCCCHHH----
Q ss_conf 033432102478730000-0232120550563324680479999999721--------471999954688899246----
Q 000892 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDD---- 643 (1236)
Q Consensus 577 ~~~~~r~~kr~~~~~s~L-~~i~w~rVILDEAH~iKN~~Sk~~kal~~L~--------a~~RwlLTGTPIqN~l~D---- 643 (1236)
.+ ..-.|.+||+||||++.+.......+...+. ..+++++||||.+++..+
T Consensus 365 ----------------~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~ 428 (797)
T 4a2q_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEET 428 (797)
T ss_dssp ----------------SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHH
T ss_pred ----------------CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf ----------------5465133778999886355887649999999999763147887859997277554552248999
Q ss_pred ------HHHHHHCCCCC-CCCCHHHHHHHHCCCCCCC------CCC--------HHHHHHHHHHHHHH------------
Q ss_conf ------55111001799-9997467798861887688------600--------58999999976664------------
Q 000892 644 ------LYGLLRFLKSS-PFSISRWWIEVIRDPYENG------DVG--------AMEFTHKFFKEIMC------------ 690 (1236)
Q Consensus 644 ------L~sLL~FL~p~-~l~~~~~f~~~~~~pi~~g------~~~--------~~~~L~~lL~~imL------------ 690 (1236)
|+..+.+-... .......+..++..|.... ... .+..++.++..++-
T Consensus 429 ~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~ 508 (797)
T 4a2q_A 429 IEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDF 508 (797)
T ss_dssp HHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CC
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999854984885454317889973588854888457777867899999999999999999875677653000011
Q ss_pred ----------HCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH------------------HH
Q ss_conf ----------13432223568999971899993299999999999999988799999999------------------99
Q 000892 691 ----------RSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQR------------------LK 742 (1236)
Q Consensus 691 ----------RRtK~dV~~el~LPpk~e~vv~i~lS~~Qk~lY~~l~~~~~~~~~~~~~~------------------~~ 742 (1236)
...+... ...+|. ...+..+|..+.. +.......... +.
T Consensus 509 g~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 575 (797)
T 4a2q_A 509 GTQNYEHWIVVTQRKCR--LLQLED----------KEEESRICRALFI-CTEHLRKYNDALIISEDARIIDALSYLTEFF 575 (797)
T ss_dssp SSHHHHHHHHHHHHHHH--HCCCSS----------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH--HHCCCC----------CCHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 40567789999999877--740343----------2025679999999-9999999998876541325888999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87752069998888776672010455999999999999971698777766333469999999999999999898635511
Q 000892 743 DNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEAL 822 (1236)
Q Consensus 743 ~~~~~r~~~g~v~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~tmeeiL~~Ll~~~~~e~eea~ 822 (1236)
....... ... ....-.......+..+...+..|... ...-+.|..++.+... ....
T Consensus 576 ~~~~~~~---------~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~-----------~~K~~~L~~lL~~~~~--~~~~ 631 (797)
T 4a2q_A 576 TNVKNGP---------YTE--LEQHLTAKFQEKEPELIALSKDETNE-----------NPKLEELVCILDDAYR--YNPQ 631 (797)
T ss_dssp HHHHHTT---------CCH--HHHHHHHHHHTTHHHHHHHHHCTTCC-----------CHHHHHHHHHHHHHHH--HCSS
T ss_pred HHHHCCC---------CCH--HHHHHHHHHHHHHHHHHHHHCCCCCC-----------CHHHHHHHHHHHHHHC--CCCC
T ss_conf 9875047---------668--99999999999999998763078889-----------9599999999999850--5899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH--HHHHHHHHHCCC-CCC----------------
Q ss_conf 50565462475599999867687---------------97999999--999999720068-977----------------
Q 000892 823 RKLVMALNGLAGIALIEKNLSQA---------------VSLYKEAM--AVVEEHSEDFRL-DPL---------------- 868 (1236)
Q Consensus 823 rkvlvfsq~la~L~iLe~~l~~a---------------~~~Y~~~l--~~~~e~~~~fr~-D~~---------------- 868 (1236)
.+++||++...+++.|...+... ...+.+.+ ..+.+.++.|+. +..
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCH
T ss_conf 70899979589999999999747564665521898447754578989999999999851369704999748054479751
Q ss_pred -CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
Q ss_conf -6604775279678130334545310588876389971017962102
Q 000892 869 -LNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETC 914 (1236)
Q Consensus 869 -~~lh~~~Nl~dwnpa~d~QA~R~hRiGQ~~~V~vyrlit~~TiEE~ 914 (1236)
...++.|++. |||....|+. .| ||.+++.+|.|++.+++||+
T Consensus 712 ~v~~VI~yd~p-~s~~~~iQr~--GR-GR~~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 712 QCNLVVLYEYS-GNVTKMIQVR--GR-GRAAGSKCILVTSKTEVVEN 754 (797)
T ss_dssp CCSEEEEESCC-SCHHHHHTC----------CCCEEEEECCHHHHHH
T ss_pred HCCEEEEECCC-CCHHHHHHHC--CC-CCCCCCEEEEEEECCCHHHH
T ss_conf 08989994899-9889999853--88-87878659999728768899
No 10
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=1.00 E-value=1 Score=187.11 Aligned_cols=196 Identities=9% Similarity=-0.054 Sum_probs=130.1
Q ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999718999932999999999999999887999999999987752069998888776672010455999999999999
Q 000892 701 LQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLR 780 (1236)
Q Consensus 701 l~LPpk~e~vv~i~lS~~Qk~lY~~l~~~~~~~~~~~~~~~~~~~~~r~~~g~v~~~~~~~~~~~~~~~~~iL~~L~rLR 780 (1236)
+.-|++.|++++++||+.|+++|+.+.......+.+.+.. . .. . +..-...+.+.++.||
T Consensus 18 ~~~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~-------~------~~-~------~~~~~~sl~nli~qLR 77 (328)
T 3hgt_A 18 ISGNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFET-------S------HY-K------EDVILESMKTMCLNGS 77 (328)
T ss_dssp ----CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHT-------T------TT-C------CHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC-------C------CC-C------CCHHHHHHHHHHHHHH
T ss_conf 7789885499954788899999999999649999999706-------7------87-6------4218999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCC----------CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97169877776633346999----------99999999999998986355115056546247559999986768797999
Q 000892 781 QACCHPQVGSSGLRSLQQSP----------LSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK 850 (1236)
Q Consensus 781 QiC~HP~L~~~~~~~l~~~~----------~tmeeiL~~Ll~~~~~e~eea~rkvlvfsq~la~L~iLe~~l~~a~~~Y~ 850 (1236)
++||||+|+........... ...-.+|+.|+..++..+ +++++|||++.+|+++|+.+......|.
T Consensus 78 kicnHP~L~~d~~~p~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~----~kVLIfsq~t~~LDilE~~l~~~~~~y~ 153 (328)
T 3hgt_A 78 LVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEYE----TETAIVCRPGRTMDLLEALLLGNKVHIK 153 (328)
T ss_dssp HHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHHHHHHTTSC----EEEEEEECSTHHHHHHHHHHTTSSCEEE
T ss_pred HHCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHCCCCCEE
T ss_conf 873891031054577664444304689984952999999999998589----9799997981699999999952898547
Q ss_pred HHHH---HHHHHHH--H--CCCCCC---------------CCEEEEECCCCCCCCHH-HHHH-HHHCC--CCCCCEEEEE
Q ss_conf 9999---9999972--0--068977---------------66047752796781303-3454-53105--8887638997
Q 000892 851 EAMA---VVEEHSE--D--FRLDPL---------------LNIHLHHNLTEILPMVA-NCAT-ELSQN--EQHFPGCSEK 904 (1236)
Q Consensus 851 ~~l~---~~~e~~~--~--fr~D~~---------------~~lh~~~Nl~dwnpa~d-~QA~-R~hRi--GQ~~~V~vyr 904 (1236)
...+ ..+.... . +.+-+. ...++.++. +|||++| .||+ ||||| ||+++|.|||
T Consensus 154 RlDG~~~~~~~k~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~Ds-dwNp~~d~iQa~~r~~R~~~gq~k~v~V~R 232 (328)
T 3hgt_A 154 RYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDT-TVDTSQKDIQYLLQYKRERKGLERYAPIVR 232 (328)
T ss_dssp ESSSCCC-------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECST-TCCTTSHHHHHHHCCC---------CCEEE
T ss_pred ECCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 1799963544302368816999878877775765334788888999789-989898589999998641158997064999
Q ss_pred CCCCCCCCCCCHHHHHH
Q ss_conf 10179621020457531
Q 000892 905 AFKIHSIETCDENARKC 921 (1236)
Q Consensus 905 lit~~TiEE~i~~~~k~ 921 (1236)
|+|.+||||.+++..|.
T Consensus 233 Lvt~~TiEh~~l~~~~~ 249 (328)
T 3hgt_A 233 LVAINSIDHCRLFFGKK 249 (328)
T ss_dssp EEETTSHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHCCCC
T ss_conf 94899999999880688
Done!