Query 000895
Match_columns 1235
No_of_seqs 460 out of 1579
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 15:55:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000895.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_666-670//hhsearch_pdb/000895hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 1.0 1 1 364.3 7.2 138 971-1113 4-142 (143)
2 2k2d_A Ring finger and CHY zin 1.0 1 1 185.7 1.0 72 1153-1224 1-72 (79)
3 2p0n_A Hypothetical protein NM 1.0 1 1 117.4 16.3 145 290-442 14-167 (172)
4 3cax_A Uncharacterized protein 1.0 1 1 113.2 16.2 149 291-443 8-166 (369)
5 2p0n_A Hypothetical protein NM 1.0 1 1 111.4 15.9 145 43-192 17-166 (172)
6 3cax_A Uncharacterized protein 1.0 1 1 98.3 16.4 151 643-822 8-164 (369)
7 1v87_A Deltex protein 2; ring- 1.0 1 1 90.2 4.5 55 1109-1163 22-95 (114)
8 2l0b_A E3 ubiquitin-protein li 1.0 1 1 89.3 3.2 52 1110-1162 38-89 (91)
9 1x4j_A Ring finger protein 38; 1.0 1 1 87.8 2.9 54 1109-1163 20-73 (75)
10 2ep4_A Ring finger protein 24; 1.0 1 1 87.1 4.1 59 1105-1164 8-66 (74)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=1.00 E-value=1 Score=364.33 Aligned_cols=138 Identities=45% Similarity=1.056 Sum_probs=132.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998212102766864521133221352387335911116658887761234611036556445588987876778975
Q 000895 971 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1050 (1235)
Q Consensus 971 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~v~C~~C~~~q~~~~~C~~~~C~~~~ 1050 (1235)
|-.|+|+|++++++||+||+|+|+|+||||++|||||+||||.++|+++|+.+++|+||.|+++||+++.|.+ | |..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~--C-g~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCHHCCCEEEECCCCCCCCCCCCCCC--C-CCC
T ss_conf 8888643434576788366888617888789814614420334556643110504442356760654673887--7-862
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 532852444576799950147999864458988855312588653223444-433345788788
Q 000895 1051 MAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLET 1113 (1235)
Q Consensus 1051 ~a~y~C~iC~l~d~~k~~yHC~~C~iCR~g~gl~~~~fHC~~C~~C~~~~l-~~H~C~e~~~~~ 1113 (1235)
|++|||+||||||++|+||||++|||||||+ ++|||||++||+||++++ ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CEEEEECEEECCCCCCCEECCCCCCCEECCC--CCCCEECCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 0106711004355778604278887324468--7576788918823635657674657667668
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=185.69 Aligned_cols=72 Identities=36% Similarity=0.613 Sum_probs=69.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 888886737624666647999850399966640677176368899888885234124898889756421124
Q 000895 1153 CPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQEILCNDCDKKGSAPFHWLYHKCGFCGSYNTRVIKVE 1224 (1235)
Q Consensus 1153 CPiCrksv~dm~~~~~~lD~~i~~~pmP~ey~~~~~~I~CnDC~~~s~~~~H~l~~kC~~C~syNT~~~~~~ 1224 (1235)
||+|+||++||+.+|++||++|+.+|||++|++++++|+||||+++|.++|||+||||+.|+||||++++-.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~ 72 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGR 72 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEECCCC
T ss_conf 983541699999999999999985789989959793789999998752774030256869989485766788
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=117.35 Aligned_cols=145 Identities=14% Similarity=0.173 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH--------
Q ss_conf 874478899999999999999999999742269-91109999999999999977653101244013256676--------
Q 000895 290 MSCPIDEIMLWHNAIKRELNDIAEAARKIQLSG-DFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL-------- 360 (1235)
Q Consensus 290 ~~~pid~l~~~HkALRrEL~~L~~~a~~~~~~g-d~~~L~~L~~r~~fl~~vl~~Hs~aEDeviFPaL~~r~-------- 360 (1235)
...+|+.|...|+.+|+.+..|...+..+...+ +...+..+...+.+|...+..||..|++++||+|..+.
T Consensus 14 ~~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~ 93 (172)
T 2p0n_A 14 FAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVD 93 (172)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 62199999999999999999999999999875998399999999999998779877740788851999863851448999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 42874999999999999999988620899870799999999999999999986898999999999830999999999995
Q 000895 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1235)
Q Consensus 361 sme~EH~~ie~lle~l~~ll~~~~~a~~~~~~~~~~~eLa~~le~L~~~L~~Hl~~EE~qvlPLl~~~fS~eEq~~L~~~ 440 (1235)
.|..||..+...++.+...+..+........ ....+..+...+..|+.+||+ +||++.+.+|.++|.+|+.+
T Consensus 94 ~l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~-------~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~ 165 (172)
T 2p0n_A 94 ELLRQHIGLHDNWAAVSAEFAKLEADNAYVP-------DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEI 165 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC-------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHH
T ss_conf 9999999999999999999999876997743-------499999999999999999877-77999976999999999999
Q ss_pred HH
Q ss_conf 73
Q 000895 441 SL 442 (1235)
Q Consensus 441 ~l 442 (1235)
+.
T Consensus 166 ~~ 167 (172)
T 2p0n_A 166 MA 167 (172)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 4
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=1.00 E-value=1 Score=113.19 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH------
Q ss_conf 744788999999999999999999997422699----1109999999999999977653101244013256676------
Q 000895 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD----FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL------ 360 (1235)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~~~~~gd----~~~L~~L~~r~~fl~~vl~~Hs~aEDeviFPaL~~r~------ 360 (1235)
-+|++.|...|++|++.|..|...+.++..... ...+..+...+.+|.++-..|+..|+++|||+|+.+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~~ 87 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIAT 87 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98789999999999999999999999986036521136789999999999998788763125766638999849987892
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 42874999999999999999988620899870799999999999999999986898999999999830999999999995
Q 000895 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1235)
Q Consensus 361 sme~EH~~ie~lle~l~~ll~~~~~a~~~~~~~~~~~eLa~~le~L~~~L~~Hl~~EE~qvlPLl~~~fS~eEq~~L~~~ 440 (1235)
.|..||+++..++..+..++.... ... . .+.+..+...+..+...+.+|+.+||+.+||++.+.||.++|..+..+
T Consensus 88 vM~~eHd~~r~~l~~l~~~~~~~~-~~~--~-~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~ 163 (369)
T 3cax_A 88 VLWTKHDEIRAMIKQLAELLRKRE-EMP--W-EEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQ 163 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGG-GSC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 677776999999999999984545-664--1-568999999999999999999999998899999986899999999826
Q ss_pred HHH
Q ss_conf 730
Q 000895 441 SLC 443 (1235)
Q Consensus 441 ~l~ 443 (1235)
+-.
T Consensus 164 ~~e 166 (369)
T 3cax_A 164 EDE 166 (369)
T ss_dssp GGG
T ss_pred CCC
T ss_conf 762
No 5
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=111.39 Aligned_cols=145 Identities=13% Similarity=0.090 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH---HHHHHHHH
Q ss_conf 737799999999999999999998640379995319999999999999999851045453206587765---56799897
Q 000895 43 PILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRV---KNIARTYS 119 (1235)
Q Consensus 43 Pi~~~~~iHkAlR~eL~~l~~~~~~~~~~~gd~~~~~~l~~r~~fL~~~~~~H~~aEDevI~PaLd~Rv---~~v~~~~~ 119 (1235)
||+.+.--|+.+|+.+..|..++..+.....+......+.+-++++...++.|+..|++++||+|..+. .+++..+.
T Consensus 17 ~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~l~ 96 (172)
T 2p0n_A 17 PIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDELL 96 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999999999999999999999875998399999999999998779877740788851999863851448999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 6444187989999999985301842--789999999998799998867999998755786108999999999977
Q 000895 120 LEHEGESVLFDQLFELLNSSMRNEE--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQF 192 (1235)
Q Consensus 120 ~EH~~~~~lf~~l~~~l~~~~~~~~--~~~~eLa~~l~~l~~~l~qHl~~EE~qv~PLl~~~fS~~Eqa~L~~~~ 192 (1235)
.||.....+++.|...+..+..+.. ... ..+..+...+.+|+++||. +||.+.+.+|.++|.+|+.++
T Consensus 97 ~EH~~~~~~l~~l~~~l~~~~~~~~~~~~~----~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~ 166 (172)
T 2p0n_A 97 RQHIGLHDNWAAVSAEFAKLEADNAYVPDE----EAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIM 166 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCCCCH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999999999999999987699774349----9999999999999999877-779999769999999999999
No 6
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=1.00 E-value=1 Score=98.31 Aligned_cols=151 Identities=20% Similarity=0.274 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHHHHHH-HHHHHHCHHCCCCCCCCCCCCCC
Q ss_conf 88466899999999999998898614588888-----3249999999999999999-98621000014223332234544
Q 000895 643 SRPIDNIFKFHKAIRKDLEYLDGESGKLNDCN-----ETFLRQFTGRFRLLWGLYR-AHSNAEDDIVFPALESKETLSNV 716 (1235)
Q Consensus 643 ~~PID~i~~~H~AIRkdL~~L~~ea~~l~~~d-----~~~L~~f~~rf~~L~~v~~-~HS~AEDeivfPALe~k~~~~nv 716 (1235)
-+||+.+..-|.+|++.|..|...+.++.... ...+..+...|.+|.. +. .|..-|++++||.|++. +....
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~-l~~~H~~kEE~~LFP~le~~-g~~~p 85 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRM-VGFTHYNREEMLIFPYIERR-GLTVI 85 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTH-HHHTHHHHHHHHTHHHHHTT-TCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf 98789999999999999999999999986036521136789999999999998-78876312576663899984-99878
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55541226889988988999888665542302467677543464322230246653799999999999999999988667
Q 000895 717 SHSYTLDHKQEEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVF 796 (1235)
Q Consensus 717 shs~~~EH~~ee~lfedi~~~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~kL~~~~ksl~~~L~~Hi~ 796 (1235)
...+..+|.++..++..+..++.... . .. .. +....+-..++.+...+.+|+.
T Consensus 86 ~~vM~~eHd~~r~~l~~l~~~~~~~~------~---~~--------------~~----~~~~~~~~~l~~~~~~l~~Hi~ 138 (369)
T 3cax_A 86 ATVLWTKHDEIRAMIKQLAELLRKRE------E---MP--------------WE----EFVEKFKAKAGEVAFALSDMVF 138 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGG------G---SC--------------HH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC------C---CC--------------HH----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 92677776999999999999984545------6---64--------------15----6899999999999999999999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 67785656886109999999999999
Q 000895 797 REELELWPLFDRHFSVEEQDKIVGRI 822 (1235)
Q Consensus 797 ~EE~ElfPL~rk~fS~eeQ~~Lv~~~ 822 (1235)
.||..|||.+.+.||.++|.+|...+
T Consensus 139 kEe~iLfP~a~~~ls~~dw~~i~~~~ 164 (369)
T 3cax_A 139 RENNIFYPTLKALLSEGEWKAIKMQE 164 (369)
T ss_dssp HHHHTHHHHHHHHCCHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf 99988999999868999999998267
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=90.18 Aligned_cols=55 Identities=29% Similarity=0.534 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCCCCC--------------CCCEECCCCCCCCHHHHHHHH-----HCCCCCCCCCCCCCCH
Q ss_conf 887887632222355687--------------841354888725800289654-----0799988888673762
Q 000895 1109 KGLETNCPICCDFLFTSS--------------ATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKSLGDM 1163 (1235)
Q Consensus 1109 ~~~~~~CpICle~lf~s~--------------~~v~~LpCGH~fH~~C~~~~~-----~~~~~CPiCrksv~dm 1163 (1235)
...+..||||++++.... ..++.++|||.||..||..|+ ..+.+||+||+.+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999684078100374443332223455752135229979960499999999703677898699999823777
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=89.31 Aligned_cols=52 Identities=31% Similarity=0.798 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 87887632222355687841354888725800289654079998888867376
Q 000895 1110 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1162 (1235)
Q Consensus 1110 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~C~~~~~~~~~~CPiCrksv~d 1162 (1235)
..+..||||++.+ .....++.+||||.||..|+..|+..+.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~~-~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEY-VKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEEC-CTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCCCCCHHH-CCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 8999884369021-589827962799948999999999769968380940799
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=87.84 Aligned_cols=54 Identities=31% Similarity=0.702 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 8878876322223556878413548887258002896540799988888673762
Q 000895 1109 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1163 (1235)
Q Consensus 1109 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~C~~~~~~~~~~CPiCrksv~dm 1163 (1235)
......||||++. +.....++.+||||.||..|+..|++.+.+||+||+.+...
T Consensus 20 ~~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCCEECCCC-CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 6799989388935-27998699878998757999999997499390708807888
No 10
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=87.13 Aligned_cols=59 Identities=25% Similarity=0.653 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 345788788763222235568784135488872580028965407999888886737624
Q 000895 1105 KCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMA 1164 (1235)
Q Consensus 1105 ~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~C~~~~~~~~~~CPiCrksv~dm~ 1164 (1235)
+-.+...+..||||++. +.....+..+||||.||..|+.+|++.+.+||+||+.+..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 8 KVKELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 43268999989577920-179972787089998549999999985996979593416611
Done!