Query 000897
Match_columns 1234
No_of_seqs 304 out of 1406
Neff 3.6
Searched_HMMs 46136
Date Tue Apr 2 00:36:33 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 2.1E-47 4.7E-52 446.8 17.3 337 882-1233 111-531 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 4.2E-34 9.1E-39 287.3 12.9 155 915-1079 1-156 (156)
3 KOG1605 TFIIF-interacting CTD 100.0 1.7E-33 3.7E-38 303.9 9.4 171 915-1138 84-258 (262)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 3.6E-30 7.9E-35 258.9 13.9 154 920-1119 1-159 (162)
5 PF03031 NIF: NLI interacting 100.0 1.1E-29 2.5E-34 249.9 12.4 157 921-1133 1-159 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 99.9 2.7E-27 5.9E-32 246.9 13.1 163 915-1138 16-190 (195)
7 KOG2832 TFIIF-interacting CTD 99.9 7.2E-23 1.5E-27 227.4 12.9 160 916-1141 185-345 (393)
8 smart00577 CPDc catalytic doma 99.8 1.1E-20 2.3E-25 186.9 13.1 144 919-1080 1-145 (148)
9 COG5190 FCP1 TFIIF-interacting 99.8 7E-20 1.5E-24 207.3 9.7 180 909-1139 201-381 (390)
10 COG5190 FCP1 TFIIF-interacting 99.5 4.5E-14 9.8E-19 160.6 8.9 271 914-1217 20-350 (390)
11 PF12738 PTCB-BRCT: twin BRCT 99.4 8E-13 1.7E-17 113.9 6.6 63 1147-1214 1-63 (63)
12 PF00533 BRCT: BRCA1 C Terminu 99.3 5.3E-12 1.1E-16 109.7 7.1 75 1140-1219 2-78 (78)
13 KOG3226 DNA repair protein [Re 99.2 4.9E-12 1.1E-16 141.5 4.9 88 1140-1232 314-401 (508)
14 smart00292 BRCT breast cancer 99.1 1.1E-10 2.3E-15 99.0 7.3 77 1142-1222 1-80 (80)
15 cd00027 BRCT Breast Cancer Sup 99.1 2.3E-10 5.1E-15 94.9 7.8 71 1146-1220 1-72 (72)
16 KOG0323 TFIIF-interacting CTD 99.1 6.8E-12 1.5E-16 149.7 -3.2 587 139-1004 23-634 (635)
17 PLN03122 Poly [ADP-ribose] pol 98.4 3.7E-07 7.9E-12 112.9 7.5 87 1140-1232 186-277 (815)
18 PLN03123 poly [ADP-ribose] pol 98.3 5.6E-07 1.2E-11 113.2 7.2 88 1140-1232 390-480 (981)
19 KOG1929 Nucleotide excision re 98.1 3.6E-06 7.8E-11 104.1 5.4 100 1130-1234 90-190 (811)
20 KOG1929 Nucleotide excision re 97.7 1.9E-05 4.2E-10 97.8 2.5 97 1131-1232 481-577 (811)
21 KOG3524 Predicted guanine nucl 97.5 3.7E-05 8E-10 92.8 1.3 82 1141-1232 116-197 (850)
22 PRK14350 ligA NAD-dependent DN 97.4 0.00026 5.6E-09 87.1 7.9 75 1141-1219 591-665 (669)
23 PRK07956 ligA NAD-dependent DN 97.4 0.00048 1E-08 84.8 9.8 74 1143-1220 590-663 (665)
24 PRK06063 DNA polymerase III su 97.4 0.00033 7.3E-09 79.0 7.8 72 1143-1219 232-305 (313)
25 PRK14351 ligA NAD-dependent DN 97.4 0.00071 1.5E-08 83.6 11.0 75 1142-1220 608-683 (689)
26 cd01427 HAD_like Haloacid deha 97.4 0.00025 5.4E-09 65.1 5.3 62 922-1012 1-63 (139)
27 PRK06195 DNA polymerase III su 97.2 0.00073 1.6E-08 75.9 8.0 72 1142-1217 219-304 (309)
28 COG0272 Lig NAD-dependent DNA 97.2 0.00098 2.1E-08 81.5 9.1 72 1142-1217 593-664 (667)
29 KOG3548 DNA damage checkpoint 97.0 0.00052 1.1E-08 85.2 4.3 92 1135-1232 916-1035(1176)
30 TIGR00575 dnlj DNA ligase, NAD 97.0 0.001 2.2E-08 81.8 6.8 69 1142-1214 583-651 (652)
31 TIGR01684 viral_ppase viral ph 96.9 0.002 4.3E-08 73.0 7.2 74 915-1025 121-196 (301)
32 TIGR01681 HAD-SF-IIIC HAD-supe 96.9 0.00074 1.6E-08 66.4 3.1 80 974-1061 29-119 (128)
33 KOG0966 ATP-dependent DNA liga 96.8 0.0028 6.1E-08 78.3 7.9 86 1140-1229 630-718 (881)
34 PHA03398 viral phosphatase sup 96.7 0.0027 5.8E-08 72.0 6.7 74 915-1025 123-198 (303)
35 TIGR01685 MDP-1 magnesium-depe 96.6 0.0028 6.1E-08 66.5 5.3 100 970-1073 41-153 (174)
36 KOG2043 Signaling protein SWIF 96.6 0.0027 5.8E-08 80.5 6.1 78 1147-1232 660-738 (896)
37 TIGR01662 HAD-SF-IIIA HAD-supe 96.4 0.011 2.3E-07 57.3 7.9 101 921-1059 1-112 (132)
38 KOG4362 Transcriptional regula 96.2 0.0056 1.2E-07 75.3 5.3 80 1145-1232 477-562 (684)
39 KOG2481 Protein required for n 96.1 0.005 1.1E-07 73.3 4.2 79 1142-1232 326-415 (570)
40 PHA02530 pseT polynucleotide k 96.0 0.0052 1.1E-07 67.2 3.8 130 917-1073 155-292 (300)
41 TIGR01261 hisB_Nterm histidino 96.0 0.018 3.9E-07 59.4 7.4 108 921-1060 2-130 (161)
42 COG5275 BRCT domain type II [G 95.9 0.02 4.3E-07 62.5 7.4 76 1138-1217 151-227 (276)
43 TIGR01664 DNA-3'-Pase DNA 3'-p 95.9 0.03 6.5E-07 57.9 8.3 69 919-1012 12-93 (166)
44 PF05152 DUF705: Protein of un 95.9 0.021 4.5E-07 64.6 7.5 75 914-1025 116-192 (297)
45 TIGR01686 FkbH FkbH-like domai 95.8 0.0094 2E-07 67.0 4.6 107 919-1061 2-114 (320)
46 TIGR01672 AphA HAD superfamily 95.7 0.016 3.4E-07 63.7 5.9 100 916-1025 59-168 (237)
47 COG5163 NOP7 Protein required 95.6 0.01 2.2E-07 68.9 4.2 81 1141-1232 348-439 (591)
48 PRK08942 D,D-heptose 1,7-bisph 95.6 0.033 7.1E-07 57.2 7.4 53 920-1000 3-56 (181)
49 TIGR01533 lipo_e_P4 5'-nucleot 95.6 0.031 6.6E-07 62.5 7.7 97 916-1025 71-172 (266)
50 TIGR01656 Histidinol-ppas hist 95.5 0.052 1.1E-06 54.3 8.2 65 921-1012 1-81 (147)
51 TIGR00213 GmhB_yaeD D,D-heptos 95.0 0.067 1.5E-06 54.9 7.2 28 973-1000 25-53 (176)
52 COG4996 Predicted phosphatase 94.9 0.09 2E-06 54.3 7.7 117 922-1064 2-130 (164)
53 PF12689 Acid_PPase: Acid Phos 94.6 0.049 1.1E-06 57.4 5.3 121 920-1061 3-135 (169)
54 PRK11009 aphA acid phosphatase 94.0 0.095 2.1E-06 57.8 6.0 96 917-1025 60-170 (237)
55 PF13419 HAD_2: Haloacid dehal 93.1 0.11 2.5E-06 50.3 4.3 86 971-1061 74-161 (176)
56 TIGR02253 CTE7 HAD superfamily 93.1 0.096 2.1E-06 54.4 4.1 84 972-1060 92-177 (221)
57 KOG3524 Predicted guanine nucl 92.9 0.028 6E-07 69.1 -0.2 95 1132-1232 199-293 (850)
58 PRK05446 imidazole glycerol-ph 92.9 0.38 8.3E-06 56.0 8.9 54 919-998 1-55 (354)
59 PRK08238 hypothetical protein; 92.6 0.16 3.4E-06 61.1 5.6 48 973-1025 71-119 (479)
60 TIGR01689 EcbF-BcbF capsule bi 91.9 0.38 8.3E-06 48.7 6.5 50 974-1024 24-86 (126)
61 TIGR01663 PNK-3'Pase polynucle 91.5 0.45 9.9E-06 58.1 7.6 113 918-1060 166-294 (526)
62 PF08645 PNK3P: Polynucleotide 91.1 0.27 5.8E-06 50.9 4.5 53 921-998 1-54 (159)
63 TIGR02254 YjjG/YfnB HAD superf 90.7 0.33 7.1E-06 50.3 4.7 84 972-1060 95-180 (224)
64 TIGR01449 PGP_bact 2-phosphogl 90.7 0.33 7.2E-06 50.1 4.7 98 972-1074 83-182 (213)
65 TIGR01509 HAD-SF-IA-v3 haloaci 90.2 0.37 8E-06 48.1 4.5 83 973-1061 84-168 (183)
66 TIGR01668 YqeG_hyp_ppase HAD s 90.0 0.6 1.3E-05 48.2 6.0 58 918-1011 23-82 (170)
67 PLN02770 haloacid dehalogenase 89.9 0.42 9E-06 51.9 4.9 97 972-1073 106-204 (248)
68 PRK13288 pyrophosphatase PpaX; 89.5 0.65 1.4E-05 48.6 5.8 96 972-1072 80-177 (214)
69 TIGR01428 HAD_type_II 2-haloal 89.4 0.43 9.3E-06 49.2 4.3 84 973-1061 91-176 (198)
70 TIGR01454 AHBA_synth_RP 3-amin 89.3 0.61 1.3E-05 48.4 5.4 97 972-1073 73-171 (205)
71 PLN03243 haloacid dehalogenase 88.9 0.46 9.9E-06 52.6 4.4 95 973-1072 108-204 (260)
72 PRK13222 phosphoglycolate phos 88.8 0.7 1.5E-05 48.1 5.4 87 972-1063 91-179 (226)
73 TIGR01993 Pyr-5-nucltdase pyri 88.6 0.36 7.8E-06 49.3 3.1 83 973-1061 83-169 (184)
74 PRK06769 hypothetical protein; 88.4 0.96 2.1E-05 46.9 6.1 27 974-1000 28-55 (173)
75 PRK09449 dUMP phosphatase; Pro 88.0 0.65 1.4E-05 48.7 4.6 83 973-1060 94-178 (224)
76 TIGR01422 phosphonatase phosph 87.0 0.83 1.8E-05 49.2 4.8 96 973-1072 98-196 (253)
77 PF13344 Hydrolase_6: Haloacid 86.9 1.3 2.7E-05 42.7 5.5 34 977-1010 17-51 (101)
78 TIGR01459 HAD-SF-IIA-hyp4 HAD- 86.4 1.5 3.2E-05 47.4 6.3 67 919-1024 7-76 (242)
79 PRK00192 mannosyl-3-phosphogly 86.3 1.4 3.1E-05 48.4 6.2 57 920-1013 4-61 (273)
80 TIGR01489 DKMTPPase-SF 2,3-dik 86.1 1.5 3.3E-05 44.1 5.9 49 973-1023 71-120 (188)
81 PRK10563 6-phosphogluconate ph 85.9 0.55 1.2E-05 49.3 2.7 96 972-1073 86-182 (221)
82 PF08282 Hydrolase_3: haloacid 85.8 1.3 2.7E-05 45.7 5.2 35 977-1011 18-53 (254)
83 COG2503 Predicted secreted aci 85.5 1.2 2.5E-05 50.3 5.0 28 908-935 67-94 (274)
84 COG2179 Predicted hydrolase of 84.9 1.5 3.3E-05 47.0 5.3 115 913-1077 21-141 (175)
85 COG0561 Cof Predicted hydrolas 84.5 2.2 4.8E-05 46.2 6.6 59 919-1014 2-61 (264)
86 TIGR00338 serB phosphoserine p 84.1 1.4 3.1E-05 46.0 4.8 48 973-1021 84-132 (219)
87 PRK11587 putative phosphatase; 84.1 1.6 3.5E-05 46.1 5.2 94 972-1071 81-176 (218)
88 PRK14988 GMP/IMP nucleotidase; 83.9 0.92 2E-05 48.7 3.4 95 973-1072 92-188 (224)
89 TIGR03333 salvage_mtnX 2-hydro 83.9 1.9 4E-05 45.8 5.6 50 972-1021 68-118 (214)
90 PRK13226 phosphoglycolate phos 83.8 1.7 3.6E-05 46.6 5.3 87 972-1063 93-181 (229)
91 PRK10826 2-deoxyglucose-6-phos 83.6 1.3 2.9E-05 46.6 4.4 95 973-1072 91-187 (222)
92 COG1011 Predicted hydrolase (H 83.4 1.5 3.3E-05 45.6 4.7 85 973-1062 98-183 (229)
93 TIGR01456 CECR5 HAD-superfamil 82.6 2.1 4.6E-05 48.7 5.7 15 921-935 1-15 (321)
94 TIGR01670 YrbI-phosphatas 3-de 82.6 3.1 6.6E-05 42.5 6.3 75 973-1063 29-105 (154)
95 PRK13223 phosphoglycolate phos 82.5 2 4.3E-05 47.7 5.3 94 973-1071 100-195 (272)
96 TIGR01675 plant-AP plant acid 82.4 5.2 0.00011 44.6 8.4 100 906-1025 63-172 (229)
97 PRK10725 fructose-1-P/6-phosph 82.3 0.8 1.7E-05 46.5 2.1 93 973-1071 87-180 (188)
98 PLN02575 haloacid dehalogenase 81.9 1.6 3.4E-05 51.6 4.5 86 973-1063 215-302 (381)
99 TIGR01487 SPP-like sucrose-pho 81.6 3 6.4E-05 44.0 6.0 38 977-1014 21-59 (215)
100 TIGR02461 osmo_MPG_phos mannos 81.6 3.2 6.8E-05 45.0 6.3 35 978-1012 19-54 (225)
101 TIGR02463 MPGP_rel mannosyl-3- 81.1 2.7 5.8E-05 44.3 5.5 34 979-1012 21-55 (221)
102 TIGR02009 PGMB-YQAB-SF beta-ph 80.3 1.5 3.2E-05 44.3 3.1 82 973-1061 87-170 (185)
103 TIGR00099 Cof-subfamily Cof su 79.9 3.7 8E-05 44.3 6.1 37 977-1013 19-56 (256)
104 PRK03669 mannosyl-3-phosphogly 79.8 4.1 8.8E-05 44.8 6.5 59 918-1013 5-64 (271)
105 TIGR01549 HAD-SF-IA-v1 haloaci 79.5 4 8.6E-05 40.3 5.8 82 972-1060 62-144 (154)
106 PLN02779 haloacid dehalogenase 79.5 2.2 4.8E-05 47.8 4.4 96 973-1072 143-241 (286)
107 TIGR01544 HAD-SF-IE haloacid d 79.5 3 6.5E-05 47.5 5.5 52 972-1023 119-174 (277)
108 PRK10530 pyridoxal phosphate ( 79.4 5.4 0.00012 43.0 7.2 57 920-1013 3-60 (272)
109 PRK09456 ?-D-glucose-1-phospha 79.4 1.1 2.5E-05 46.6 2.0 89 971-1063 81-171 (199)
110 TIGR01491 HAD-SF-IB-PSPlk HAD- 79.1 4.4 9.6E-05 41.4 6.1 50 973-1023 79-129 (201)
111 PRK10513 sugar phosphate phosp 79.0 3.9 8.4E-05 44.3 6.0 57 920-1013 3-60 (270)
112 PF11019 DUF2608: Protein of u 78.9 2.3 5E-05 47.4 4.3 160 919-1079 19-211 (252)
113 TIGR01484 HAD-SF-IIB HAD-super 78.0 3.6 7.9E-05 42.7 5.2 35 976-1010 19-54 (204)
114 TIGR01548 HAD-SF-IA-hyp1 haloa 77.3 3.5 7.5E-05 42.9 4.8 81 974-1060 106-188 (197)
115 PRK01158 phosphoglycolate phos 76.5 6.5 0.00014 41.4 6.6 57 921-1014 4-61 (230)
116 PRK05601 DNA polymerase III su 76.3 5.1 0.00011 47.6 6.3 74 1143-1221 294-369 (377)
117 TIGR02252 DREG-2 REG-2-like, H 76.3 3.9 8.5E-05 42.3 4.9 82 973-1060 104-187 (203)
118 PRK13478 phosphonoacetaldehyde 75.4 4.7 0.0001 44.2 5.4 96 973-1072 100-198 (267)
119 TIGR02247 HAD-1A3-hyp Epoxide 75.2 1.7 3.8E-05 45.2 2.0 87 972-1063 92-182 (211)
120 PLN02940 riboflavin kinase 74.6 2.5 5.5E-05 49.4 3.3 85 973-1062 92-179 (382)
121 PHA02597 30.2 hypothetical pro 74.5 2.6 5.6E-05 43.6 3.0 95 972-1074 72-171 (197)
122 TIGR02137 HSK-PSP phosphoserin 74.5 4.8 0.0001 43.3 5.1 50 973-1023 67-116 (203)
123 PRK09552 mtnX 2-hydroxy-3-keto 74.4 3.8 8.3E-05 43.5 4.3 38 973-1010 73-111 (219)
124 TIGR01486 HAD-SF-IIB-MPGP mann 74.0 6.3 0.00014 42.8 5.9 34 979-1012 21-55 (256)
125 TIGR01488 HAD-SF-IB Haloacid D 74.0 6.2 0.00014 39.6 5.5 49 973-1022 72-121 (177)
126 PRK13582 thrH phosphoserine ph 73.7 5 0.00011 41.5 4.9 49 972-1021 66-114 (205)
127 PRK10444 UMP phosphatase; Prov 72.5 6.5 0.00014 43.5 5.7 14 922-935 3-16 (248)
128 TIGR01482 SPP-subfamily Sucros 72.3 7.2 0.00016 40.8 5.7 31 981-1011 22-53 (225)
129 PRK15126 thiamin pyrimidine py 72.2 7.5 0.00016 42.5 6.0 38 1165-1202 191-239 (272)
130 PRK13225 phosphoglycolate phos 71.7 5 0.00011 45.0 4.6 81 973-1061 141-223 (273)
131 smart00775 LNS2 LNS2 domain. T 71.2 7.5 0.00016 40.3 5.4 30 975-1004 28-58 (157)
132 TIGR03351 PhnX-like phosphonat 71.0 6.1 0.00013 41.4 4.8 85 973-1061 86-174 (220)
133 PRK06698 bifunctional 5'-methy 70.4 6.4 0.00014 46.8 5.4 92 973-1071 329-421 (459)
134 KOG0966 ATP-dependent DNA liga 69.3 11 0.00024 48.3 7.2 63 1169-1231 807-881 (881)
135 PLN03017 trehalose-phosphatase 68.9 7.7 0.00017 45.9 5.5 64 913-1008 104-167 (366)
136 PRK10976 putative hydrolase; P 68.7 11 0.00023 41.0 6.2 15 921-935 3-17 (266)
137 TIGR01691 enolase-ppase 2,3-di 68.7 6.3 0.00014 43.2 4.5 86 972-1063 93-182 (220)
138 TIGR01458 HAD-SF-IIA-hyp3 HAD- 68.6 7.8 0.00017 42.8 5.2 46 922-1001 3-49 (257)
139 PF03767 Acid_phosphat_B: HAD 68.6 8.9 0.00019 42.2 5.6 78 917-1014 69-156 (229)
140 KOG3109 Haloacid dehalogenase- 68.6 6.3 0.00014 44.1 4.4 45 973-1019 99-143 (244)
141 COG0637 Predicted phosphatase/ 68.2 4.1 9E-05 44.0 3.0 84 973-1061 85-170 (221)
142 PLN02645 phosphoglycolate phos 67.9 8.7 0.00019 43.6 5.5 55 919-1011 27-82 (311)
143 PLN02954 phosphoserine phospha 67.0 10 0.00023 39.8 5.6 50 973-1022 83-134 (224)
144 PRK10187 trehalose-6-phosphate 65.5 8.6 0.00019 42.8 4.8 60 919-1010 13-74 (266)
145 PRK09484 3-deoxy-D-manno-octul 64.5 18 0.0004 37.9 6.8 60 988-1061 63-123 (183)
146 PF09419 PGP_phosphatase: Mito 63.3 12 0.00025 40.1 5.1 59 917-1011 38-106 (168)
147 TIGR01452 PGP_euk phosphoglyco 63.1 13 0.00028 41.4 5.6 23 977-999 21-44 (279)
148 TIGR01493 HAD-SF-IA-v2 Haloaci 63.1 2.5 5.5E-05 42.6 0.2 77 973-1060 89-166 (175)
149 TIGR01990 bPGM beta-phosphoglu 62.2 7.6 0.00016 39.3 3.4 82 973-1061 86-169 (185)
150 TIGR01457 HAD-SF-IIA-hyp2 HAD- 61.4 15 0.00032 40.5 5.6 14 922-935 3-16 (249)
151 PTZ00174 phosphomannomutase; P 58.9 18 0.00038 39.6 5.7 17 919-935 4-20 (247)
152 PLN02919 haloacid dehalogenase 58.9 12 0.00026 49.6 5.1 85 975-1063 162-248 (1057)
153 TIGR01680 Veg_Stor_Prot vegeta 58.7 29 0.00063 40.0 7.4 50 976-1025 147-197 (275)
154 COG0647 NagD Predicted sugar p 58.3 15 0.00032 42.0 5.1 55 918-1010 6-61 (269)
155 TIGR00685 T6PP trehalose-phosp 57.4 7.5 0.00016 42.4 2.5 62 918-1012 1-62 (244)
156 PLN02423 phosphomannomutase 57.2 19 0.0004 39.7 5.5 17 919-935 6-22 (245)
157 PLN02151 trehalose-phosphatase 57.0 19 0.00041 42.6 5.8 63 914-1008 92-154 (354)
158 COG4502 5'(3')-deoxyribonucleo 56.7 5.1 0.00011 42.4 1.0 30 973-1002 67-96 (180)
159 PLN02811 hydrolase 56.1 11 0.00024 40.1 3.4 94 973-1071 77-178 (220)
160 COG3882 FkbH Predicted enzyme 55.1 6.5 0.00014 48.1 1.7 70 915-1008 217-290 (574)
161 TIGR01490 HAD-SF-IB-hyp1 HAD-s 54.8 18 0.00038 37.5 4.6 49 973-1022 86-135 (202)
162 TIGR01460 HAD-SF-IIA Haloacid 54.4 16 0.00034 39.9 4.3 33 977-1009 17-54 (236)
163 TIGR01485 SPP_plant-cyano sucr 54.0 21 0.00046 38.7 5.3 15 920-934 1-15 (249)
164 COG0241 HisB Histidinol phosph 54.0 44 0.00096 36.3 7.5 77 920-1024 5-94 (181)
165 PLN02887 hydrolase family prot 53.8 21 0.00046 44.6 5.9 61 915-1012 303-364 (580)
166 PLN02580 trehalose-phosphatase 49.7 26 0.00057 41.9 5.5 63 914-1008 113-175 (384)
167 PRK11133 serB phosphoserine ph 48.4 19 0.00042 41.6 4.1 42 972-1013 179-221 (322)
168 PRK14502 bifunctional mannosyl 48.2 34 0.00073 43.8 6.4 59 918-1013 414-473 (694)
169 PRK12702 mannosyl-3-phosphogly 47.7 37 0.00081 39.6 6.1 34 980-1013 24-58 (302)
170 PRK10725 fructose-1-P/6-phosph 46.1 11 0.00025 38.3 1.6 43 1161-1211 142-184 (188)
171 PTZ00445 p36-lilke protein; Pr 46.0 28 0.00062 38.9 4.7 64 915-1002 38-104 (219)
172 TIGR01548 HAD-SF-IA-hyp1 haloa 45.9 11 0.00024 39.2 1.6 14 922-935 2-15 (197)
173 PLN03243 haloacid dehalogenase 45.9 15 0.00032 41.0 2.6 23 912-935 17-39 (260)
174 PHA02597 30.2 hypothetical pro 45.4 12 0.00026 38.7 1.7 43 1165-1217 134-178 (197)
175 PRK11590 hypothetical protein; 44.8 12 0.00027 39.7 1.7 39 973-1011 94-134 (211)
176 PRK11587 putative phosphatase; 44.5 12 0.00025 39.8 1.5 16 920-935 3-18 (218)
177 COG1877 OtsB Trehalose-6-phosp 44.1 54 0.0012 37.5 6.6 63 914-1008 12-76 (266)
178 PF06941 NT5C: 5' nucleotidase 43.6 14 0.0003 38.8 1.9 79 973-1071 72-156 (191)
179 TIGR02253 CTE7 HAD superfamily 41.9 14 0.0003 38.6 1.6 15 921-935 3-17 (221)
180 PRK13288 pyrophosphatase PpaX; 41.5 14 0.00031 38.7 1.6 16 920-935 3-18 (214)
181 TIGR01993 Pyr-5-nucltdase pyri 41.3 14 0.00029 38.0 1.3 14 922-935 2-15 (184)
182 COG0560 SerB Phosphoserine pho 41.1 47 0.001 36.3 5.4 50 972-1022 75-125 (212)
183 TIGR03351 PhnX-like phosphonat 41.1 16 0.00035 38.4 1.8 15 921-935 2-16 (220)
184 COG1105 FruK Fructose-1-phosph 38.5 98 0.0021 36.4 7.7 73 1128-1212 112-184 (310)
185 PRK13223 phosphoglycolate phos 38.2 16 0.00035 40.7 1.4 16 920-935 13-28 (272)
186 TIGR02252 DREG-2 REG-2-like, H 37.9 19 0.00041 37.4 1.8 14 922-935 2-15 (203)
187 PF13419 HAD_2: Haloacid dehal 36.4 18 0.00038 35.2 1.2 90 1110-1211 82-175 (176)
188 KOG3548 DNA damage checkpoint 36.3 31 0.00066 45.3 3.4 62 1165-1226 1086-1159(1176)
189 PRK11590 hypothetical protein; 36.2 46 0.001 35.5 4.4 18 918-935 4-21 (211)
190 TIGR02009 PGMB-YQAB-SF beta-ph 36.2 18 0.00038 36.7 1.2 15 921-935 2-16 (185)
191 PRK13226 phosphoglycolate phos 36.2 17 0.00038 39.0 1.2 15 921-935 13-27 (229)
192 TIGR02244 HAD-IG-Ncltidse HAD 36.2 35 0.00077 40.2 3.8 42 970-1011 180-223 (343)
193 TIGR01549 HAD-SF-IA-v1 haloaci 35.3 16 0.00034 36.2 0.7 14 922-935 1-14 (154)
194 PRK13478 phosphonoacetaldehyde 35.2 21 0.00046 39.1 1.8 15 921-935 5-19 (267)
195 PF13701 DDE_Tnp_1_4: Transpos 34.4 99 0.0021 37.6 7.2 126 877-1017 102-244 (448)
196 TIGR00338 serB phosphoserine p 34.2 22 0.00048 37.3 1.6 17 919-935 13-29 (219)
197 TIGR01509 HAD-SF-IA-v3 haloaci 34.1 20 0.00043 35.9 1.2 14 922-935 1-14 (183)
198 COG0546 Gph Predicted phosphat 33.8 83 0.0018 33.8 5.8 86 973-1063 88-175 (220)
199 TIGR01990 bPGM beta-phosphoglu 33.6 19 0.00041 36.4 1.0 14 922-935 1-14 (185)
200 PF00702 Hydrolase: haloacid d 33.5 83 0.0018 32.2 5.6 43 971-1013 124-167 (215)
201 PLN02770 haloacid dehalogenase 33.5 20 0.00044 39.1 1.2 15 921-935 23-37 (248)
202 TIGR01422 phosphonatase phosph 32.8 27 0.00058 37.8 2.0 15 921-935 3-17 (253)
203 PF12710 HAD: haloacid dehalog 32.2 46 0.001 33.7 3.4 47 975-1021 86-138 (192)
204 TIGR02254 YjjG/YfnB HAD superf 31.9 23 0.0005 36.8 1.3 93 1110-1215 102-200 (224)
205 TIGR01428 HAD_type_II 2-haloal 31.9 23 0.0005 36.7 1.3 14 922-935 3-16 (198)
206 TIGR01511 ATPase-IB1_Cu copper 31.8 79 0.0017 39.2 5.9 40 973-1012 404-444 (562)
207 TIGR02247 HAD-1A3-hyp Epoxide 31.7 28 0.00062 36.4 1.9 15 921-935 3-17 (211)
208 COG0546 Gph Predicted phosphat 31.6 27 0.00058 37.5 1.7 18 919-936 3-20 (220)
209 TIGR01489 DKMTPPase-SF 2,3-dik 31.5 27 0.00058 35.3 1.6 16 920-935 1-16 (188)
210 COG4359 Uncharacterized conser 31.4 83 0.0018 35.1 5.3 39 973-1011 72-111 (220)
211 TIGR01454 AHBA_synth_RP 3-amin 31.2 19 0.00041 37.6 0.5 13 923-935 1-13 (205)
212 PRK13225 phosphoglycolate phos 30.7 23 0.00051 39.8 1.1 16 920-935 62-77 (273)
213 PRK10748 flavin mononucleotide 30.7 24 0.00052 38.2 1.2 82 973-1064 112-196 (238)
214 TIGR01545 YfhB_g-proteo haloac 30.2 66 0.0014 34.9 4.4 37 973-1009 93-131 (210)
215 PRK13222 phosphoglycolate phos 30.0 26 0.00057 36.6 1.3 16 920-935 6-21 (226)
216 TIGR01449 PGP_bact 2-phosphogl 29.8 21 0.00045 37.1 0.5 13 923-935 1-13 (213)
217 TIGR01491 HAD-SF-IB-PSPlk HAD- 29.6 30 0.00065 35.4 1.6 15 921-935 5-19 (201)
218 PRK09449 dUMP phosphatase; Pro 29.6 25 0.00054 37.0 1.1 14 921-934 4-17 (224)
219 PRK14501 putative bifunctional 29.5 83 0.0018 40.1 5.7 61 917-1009 489-551 (726)
220 PRK10826 2-deoxyglucose-6-phos 29.3 29 0.00064 36.7 1.6 17 919-935 6-22 (222)
221 TIGR01493 HAD-SF-IA-v2 Haloaci 28.0 27 0.0006 35.2 1.0 13 923-935 2-14 (175)
222 PF04147 Nop14: Nop14-like fam 27.7 30 0.00065 45.0 1.5 68 188-268 415-482 (840)
223 PRK14988 GMP/IMP nucleotidase; 27.3 33 0.00071 37.1 1.5 16 920-935 10-25 (224)
224 COG3769 Predicted hydrolase (H 26.7 1.5E+02 0.0032 34.0 6.3 30 987-1016 37-66 (274)
225 PLN02382 probable sucrose-phos 26.5 32 0.00069 41.1 1.4 21 914-934 3-23 (413)
226 PLN02779 haloacid dehalogenase 25.2 42 0.0009 37.9 1.9 17 919-935 39-55 (286)
227 PRK10748 flavin mononucleotide 24.2 63 0.0014 35.1 2.9 15 921-935 11-25 (238)
228 PRK13582 thrH phosphoserine ph 23.5 43 0.00093 34.8 1.5 12 922-933 3-14 (205)
229 PRK10563 6-phosphogluconate ph 22.9 43 0.00093 35.3 1.4 16 920-935 4-19 (221)
230 TIGR02726 phenyl_P_delta pheny 21.0 3.6E+02 0.0078 28.8 7.7 60 988-1061 49-109 (169)
231 PRK06698 bifunctional 5'-methy 20.6 45 0.00097 39.9 1.1 15 921-935 242-256 (459)
232 PF08235 LNS2: LNS2 (Lipin/Ned 20.2 1.6E+02 0.0034 31.6 4.8 38 974-1011 27-65 (157)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=2.1e-47 Score=446.81 Aligned_cols=337 Identities=36% Similarity=0.544 Sum_probs=273.7
Q ss_pred cccccchhhcccchhHHHHhhHHHHhhhHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcc
Q 000897 882 AWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHR 961 (1234)
Q Consensus 882 ~~~~fd~L~~g~~~~q~a~i~re~akrL~~Q~kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~ 961 (1234)
..+.|+++..+++..+... ...+++..+..++..++|+||+|||+||+|+.....+... +.+.. ++......+.
T Consensus 111 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~--~~~l~-~~~~~~~sn~ 184 (635)
T KOG0323|consen 111 QGRSFDYLVKGLQLSNEMV---AFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSET--EKYLK-EEAESVESNK 184 (635)
T ss_pred hccchhcccchhhhhhhhh---hhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhh--hhhcc-cccccccccc
Confidence 3556678888877666643 3567788888888889999999999999999864433321 11111 1111001123
Q ss_pred eeeeec----cceEEEEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCC
Q 000897 962 HLFRFP----HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERV 1037 (1234)
Q Consensus 962 ~lF~~~----~~~~yVklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~ 1037 (1234)
..|+|+ ...||||+|||+.+||++++++|||||||+|++.||..|+++|||+|.||++|||+|++.. .
T Consensus 185 dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~--------~ 256 (635)
T KOG0323|consen 185 DLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESP--------F 256 (635)
T ss_pred cceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCC--------c
Confidence 344444 2568999999999999999999999999999999999999999999999999999998742 1
Q ss_pred CccccCccccCCC-CeEEEEeCCCCccccCcCCcccccccccccCcccccCC----------------------------
Q 000897 1038 PKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGL---------------------------- 1088 (1234)
Q Consensus 1038 ~~iKDLsrVLGrd-s~VVIVDDsp~VW~~qpdNgI~IkpY~yF~~s~~q~Gl---------------------------- 1088 (1234)
...+||..++.+. ++||||||+.+||.+++.|+|.|.||.||.+..+.+..
T Consensus 257 ~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~ 336 (635)
T KOG0323|consen 257 FKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSR 336 (635)
T ss_pred ccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccccccccCcccccc
Confidence 4567887666666 89999999999999998899999999999986544321
Q ss_pred ---------------------------------------------CCCCcccccccCCCcchhhHHHHHHHHHHHhhccc
Q 000897 1089 ---------------------------------------------LGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFS 1123 (1234)
Q Consensus 1089 ---------------------------------------------pgpSl~Eid~DEdpeD~~LlsLL~fLekIHq~FFs 1123 (1234)
-..++.+...++.+.|++|.+++++|+.||..||.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~ 416 (635)
T KOG0323|consen 337 ISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFA 416 (635)
T ss_pred cccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhhcccchhhhh
Confidence 12344455567788899999999999999999999
Q ss_pred cC-----CCCchhhHHHHHHHHhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHH
Q 000897 1124 HQ-----SLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDK 1198 (1234)
Q Consensus 1124 ~~-----~L~~~DVR~ILkeiQ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~K 1198 (1234)
.. .+...|||.+|++++..+|+||.++|||++|.+.+.. .......+..+|+....+++..+||+|+.+.+|.|
T Consensus 417 ~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~-~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k 495 (635)
T KOG0323|consen 417 KYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDE-SADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKK 495 (635)
T ss_pred ccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcc-hhhhhhhhhcccceecccccchhhhHHhhccCcce
Confidence 75 3567999999999999999999999999999875432 34566678999999999999999999999999999
Q ss_pred HHHHHhcC-CcEEcHHHHHHHHHhccCCCCCCCCCC
Q 000897 1199 VNWALSTG-RFVVHPGWVEASALLYRRANEQDFAIK 1233 (1234)
Q Consensus 1199 Vr~Akk~G-IkIVSPdWLedClk~wkRVDEsdYlL~ 1233 (1234)
+.+|...+ ++||++.||+.|+..|.++.|..|.+.
T Consensus 496 ~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~l~ 531 (635)
T KOG0323|consen 496 VYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEPLD 531 (635)
T ss_pred eeccccccceeEechhHHHHHHHHhcchhccccccc
Confidence 99999876 999999999999999999999999863
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=4.2e-34 Score=287.33 Aligned_cols=155 Identities=43% Similarity=0.704 Sum_probs=127.7
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceEEE
Q 000897 915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 994 (1234)
Q Consensus 915 LLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEIVI 994 (1234)
|+.++|++||||||||||||+..+.... .+.+...+......+....|.+....+|+++|||+.+||++|++.||++|
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I 78 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSE--WEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHV 78 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccch--hhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEE
Confidence 5778999999999999999996542221 11111111111112334567766778999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCCccccCcCCcccc
Q 000897 995 YTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVV 1073 (1234)
Q Consensus 995 FTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~VW~~qpdNgI~I 1073 (1234)
||++.+.||++|++.|||.+.+|++|+++|++|. | .++|||++++|++ +++|||||++.+|..|++|+|+|
T Consensus 79 ~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~----~----~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i 150 (156)
T TIGR02250 79 YTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG----S----PHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQI 150 (156)
T ss_pred EeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC----C----CccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEe
Confidence 9999999999999999999999999999999874 2 5789998799988 89999999999999999999999
Q ss_pred cccccc
Q 000897 1074 ERYTYF 1079 (1234)
Q Consensus 1074 kpY~yF 1079 (1234)
+||.||
T Consensus 151 ~~~~~f 156 (156)
T TIGR02250 151 EPYNYF 156 (156)
T ss_pred CCcccC
Confidence 999997
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=1.7e-33 Score=303.87 Aligned_cols=171 Identities=31% Similarity=0.421 Sum_probs=143.7
Q ss_pred hhcCCCeEEEEeCCCceeeccc-CCCCCCchhhhhhhccccccCCCcceeeeec--cceEEEEecCCHHHHHHHhhcCce
Q 000897 915 MFSARKLCLVLDLDHTLLNSAK-FHEVDPVHDEILRKKEEQDREKPHRHLFRFP--HMGMWTKLRPGIWTFLERASKLFE 991 (1234)
Q Consensus 915 LLs~KKLTLVLDLDETLIHSs~-~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~--~~~~yVklRPGLdEFLeeLSk~YE 991 (1234)
+...+|+||||||||||||++. ++...+ .+. ...+.++ ...+||.+|||+++||..++++||
T Consensus 84 ~~~~~kk~lVLDLDeTLvHss~~~~~~~~-~d~--------------~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e 148 (262)
T KOG1605|consen 84 LATVGRKTLVLDLDETLVHSSLNLKPIVN-ADF--------------TVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYE 148 (262)
T ss_pred cccCCCceEEEeCCCcccccccccCCCCC-cce--------------eeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHH
Confidence 3468999999999999999984 221111 011 1112222 246899999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCCccccCcCCc
Q 000897 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNL 1070 (1234)
Q Consensus 992 IVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~VW~~qpdNg 1070 (1234)
++||||+...||.+|+++|||.+.+|.+|+| |++|+ ..+| .|+|||. ++|++ ++||||||+|.+|..||+||
T Consensus 149 ~v~FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C~-~~~g----~yvKdls-~~~~dL~~viIiDNsP~sy~~~p~Ng 221 (262)
T KOG1605|consen 149 LVLFTASLEVYADPLLDILDPDRKIISHRLY-RDSCT-LKDG----NYVKDLS-VLGRDLSKVIIVDNSPQSYRLQPENG 221 (262)
T ss_pred HHHHHhhhHHHHHHHHHHccCCCCeeeeeec-ccceE-eECC----cEEEEcc-eeccCcccEEEEcCChHHhccCccCC
Confidence 9999999999999999999998889999988 77675 5666 6999998 78888 89999999999999999999
Q ss_pred ccccccccccCcccccCCCCCCcccccccCCCcchhhHHHHHHHHHHHhhccccCCCCchhhHHHHHH
Q 000897 1071 IVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138 (1234)
Q Consensus 1071 I~IkpY~yF~~s~~q~GlpgpSl~Eid~DEdpeD~~LlsLL~fLekIHq~FFs~~~L~~~DVR~ILke 1138 (1234)
|+|++|. .++.|.+|++|+|||++|.. ..|||++|+.
T Consensus 222 IpI~sw~----------------------~d~~D~eLL~LlpfLe~L~~---------~~Dvr~~l~~ 258 (262)
T KOG1605|consen 222 IPIKSWF----------------------DDPTDTELLKLLPFLEALAF---------VDDVRPILAR 258 (262)
T ss_pred Ccccccc----------------------cCCChHHHHHHHHHHHHhcc---------cccHHHHHHH
Confidence 9999996 26789999999999999974 5899999975
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.97 E-value=3.6e-30 Score=258.90 Aligned_cols=154 Identities=29% Similarity=0.354 Sum_probs=128.0
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeee----ccceEEEEecCCHHHHHHHhhcCceEEEE
Q 000897 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRF----PHMGMWTKLRPGIWTFLERASKLFEMHLY 995 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~----~~~~~yVklRPGLdEFLeeLSk~YEIVIF 995 (1234)
|+|||||||||||||+..+ ... .....+.+ ....+||++|||+.+||++|+++|||+||
T Consensus 1 k~~lvlDLDeTLi~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~ 63 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKM-PKV----------------DADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIF 63 (162)
T ss_pred CcEEEEcCCCCcCCCCCCC-CCC----------------CCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEE
Confidence 6899999999999997522 100 00111111 23578999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCCccccCcCCccccc
Q 000897 996 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVE 1074 (1234)
Q Consensus 996 TAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~VW~~qpdNgI~Ik 1074 (1234)
|++++.||++|++.|||.+.+|.++++ |++|.. ..| .+.|||+ .+|++ +++|||||++..|..++.|+|+|.
T Consensus 64 Ts~~~~yA~~il~~ldp~~~~f~~~l~-r~~~~~-~~~----~~~K~L~-~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~ 136 (162)
T TIGR02251 64 TASLEEYADPVLDILDRGGKVISRRLY-RESCVF-TNG----KYVKDLS-LVGKDLSKVIIIDNSPYSYSLQPDNAIPIK 136 (162)
T ss_pred cCCcHHHHHHHHHHHCcCCCEEeEEEE-ccccEE-eCC----CEEeEch-hcCCChhhEEEEeCChhhhccCccCEeecC
Confidence 999999999999999999889998766 777743 233 4899999 58998 899999999999999999999999
Q ss_pred ccccccCcccccCCCCCCcccccccCCCcchhhHHHHHHHHHHHh
Q 000897 1075 RYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHK 1119 (1234)
Q Consensus 1075 pY~yF~~s~~q~GlpgpSl~Eid~DEdpeD~~LlsLL~fLekIHq 1119 (1234)
+|.+ +.+|.+|..|+++|+.|+.
T Consensus 137 ~f~~----------------------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 137 SWFG----------------------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred CCCC----------------------CCCHHHHHHHHHHHHHHhc
Confidence 9973 4679999999999999985
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.96 E-value=1.1e-29 Score=249.94 Aligned_cols=157 Identities=39% Similarity=0.531 Sum_probs=113.7
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceEEEEcCCcH
Q 000897 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNK 1000 (1234)
Q Consensus 921 LTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEIVIFTAGtk 1000 (1234)
++|||||||||||+...... +. + ..... ...+++|++|||+++||++|+++|||+|||++++
T Consensus 1 k~LVlDLD~TLv~~~~~~~~-~~-----------~-----~~~~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~ 62 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL-PY-----------D-----FKIID-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASE 62 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT-T------------S-----EEEET-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-H
T ss_pred CEEEEeCCCcEEEEeecCCC-Cc-----------c-----cceec-cccceeEeeCchHHHHHHHHHHhceEEEEEeehh
Confidence 68999999999999853211 00 0 00001 2356899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCCccccCcCCcccccccccc
Q 000897 1001 LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYF 1079 (1234)
Q Consensus 1001 ~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~VW~~qpdNgI~IkpY~yF 1079 (1234)
.||.+|++.|||++.+|.+++ +|++|.. ..| .++|||+ .+|++ +++|||||++.+|..++.|+|+|++|..
T Consensus 63 ~ya~~v~~~ldp~~~~~~~~~-~r~~~~~-~~~----~~~KdL~-~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~- 134 (159)
T PF03031_consen 63 EYAEPVLDALDPNGKLFSRRL-YRDDCTF-DKG----SYIKDLS-KLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFG- 134 (159)
T ss_dssp HHHHHHHHHHTTTTSSEEEEE-EGGGSEE-ETT----EEE--GG-GSSS-GGGEEEEES-GGGGTTSGGGEEE----SS-
T ss_pred hhhhHHHHhhhhhcccccccc-ccccccc-ccc----ccccchH-HHhhccccEEEEeCCHHHeeccCCceEEeccccC-
Confidence 999999999999988998766 4777752 222 4579999 45887 8999999999999999999999999862
Q ss_pred cCcccccCCCCCCcccccccCC-CcchhhHHHHHHHHHHHhhccccCCCCchhhH
Q 000897 1080 PCSRRQFGLLGPSLLEIDHDER-SEDGTLASSLGVIERLHKIFFSHQSLDDVDVR 1133 (1234)
Q Consensus 1080 ~~s~~q~GlpgpSl~Eid~DEd-peD~~LlsLL~fLekIHq~FFs~~~L~~~DVR 1133 (1234)
+ +.|.+|..|+++|+.|+. ..|||
T Consensus 135 ---------------------~~~~D~~L~~l~~~L~~l~~---------~~Dvr 159 (159)
T PF03031_consen 135 ---------------------DTPNDRELLRLLPFLEELAK---------EDDVR 159 (159)
T ss_dssp ---------------------CHTT--HHHHHHHHHHHHHT---------HS-CH
T ss_pred ---------------------CCcchhHHHHHHHHHHHhCc---------ccCCC
Confidence 3 679999999999999985 57887
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.94 E-value=2.7e-27 Score=246.87 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=127.7
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceEEE
Q 000897 915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 994 (1234)
Q Consensus 915 LLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEIVI 994 (1234)
....+|++|||||||||||+.. +. ...|+.+||||++||+.|+++|||+|
T Consensus 16 ~~~~~kklLVLDLDeTLvh~~~-----~~-------------------------~~~~~~kRP~l~eFL~~~~~~feIvV 65 (195)
T TIGR02245 16 PPREGKKLLVLDIDYTLFDHRS-----PA-------------------------ETGEELMRPYLHEFLTSAYEDYDIVI 65 (195)
T ss_pred CCCCCCcEEEEeCCCceEcccc-----cC-------------------------CCceEEeCCCHHHHHHHHHhCCEEEE
Confidence 3457899999999999999742 10 02478999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHhcCCC-ceeeeeeeecCCCCCC-----CCCCCCCCccccCcccc---CC--C-CeEEEEeCCCCc
Q 000897 995 YTMGNKLYATEMAKVLDPKG-VLFAGRVISRGDDGDP-----FDGDERVPKSKDLEGVL---GM--E-SAVVIIDDSVRV 1062 (1234)
Q Consensus 995 FTAGtk~YAd~VLdiLDP~g-~LFs~RIySRDdc~~~-----~dG~Er~~~iKDLsrVL---Gr--d-s~VVIVDDsp~V 1062 (1234)
|||+++.||+.+++.|++.+ ..+..+++ ++.|+.. ..| ..++|||+.+. |+ + +++|||||++.+
T Consensus 66 wTAa~~~ya~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g---~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~ 141 (195)
T TIGR02245 66 WSATSMKWIEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRG---KFDVKPLGVIWALLPEFYSMKNTIMFDDLRRN 141 (195)
T ss_pred EecCCHHHHHHHHHHhcccCCccceEEEE-eccccceeeEeeccC---cEEEeecHHhhhhcccCCCcccEEEEeCCHHH
Confidence 99999999999999997643 22333333 4666321 122 13589999653 33 4 799999999999
Q ss_pred cccCcCCcccccccccccCcccccCCCCCCcccccccCCCcchhhHHHHHHHHHHHhhccccCCCCchhhHHHHHH
Q 000897 1063 WPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138 (1234)
Q Consensus 1063 W~~qpdNgI~IkpY~yF~~s~~q~GlpgpSl~Eid~DEdpeD~~LlsLL~fLekIHq~FFs~~~L~~~DVR~ILke 1138 (1234)
+..||.|||+|++|.+- +.++++|.+|..|+++|+.|+. .+|||.+++.
T Consensus 142 ~~~~P~N~i~I~~f~~~------------------~~~~~~D~eL~~L~~yL~~la~---------~~Dvr~~~~~ 190 (195)
T TIGR02245 142 FLMNPQNGLKIRPFKKA------------------HANRGTDQELLKLTQYLKTIAE---------LEDFSSLDHK 190 (195)
T ss_pred HhcCCCCccccCCcccc------------------CCCCcccHHHHHHHHHHHHHhc---------Ccccchhhhc
Confidence 99999999999999631 1125789999999999999985 7899999864
No 7
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.88 E-value=7.2e-23 Score=227.37 Aligned_cols=160 Identities=24% Similarity=0.416 Sum_probs=141.2
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceEEEE
Q 000897 916 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLY 995 (1234)
Q Consensus 916 Ls~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEIVIF 995 (1234)
..+.++||||||.++|||..+. +. .+|.+++|||++.||.+++++|||+||
T Consensus 185 y~Qp~yTLVleledvLVhpdws--------------------------~~---tGwRf~kRPgvD~FL~~~a~~yEIVi~ 235 (393)
T KOG2832|consen 185 YEQPPYTLVLELEDVLVHPDWS--------------------------YK---TGWRFKKRPGVDYFLGHLAKYYEIVVY 235 (393)
T ss_pred ccCCCceEEEEeeeeEeccchh--------------------------hh---cCceeccCchHHHHHHhhcccceEEEE
Confidence 3578999999999999998641 00 357799999999999999999999999
Q ss_pred cCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCCccccCcCCccccc
Q 000897 996 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVE 1074 (1234)
Q Consensus 996 TAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~VW~~qpdNgI~Ik 1074 (1234)
|.....||.+|++.|||+| ++++|+| |+ |+.+++| +++|||+ -|+|| ++||+||-.+..+..||+|.|.++
T Consensus 236 sse~gmt~~pl~d~lDP~g-~IsYkLf-r~-~t~y~~G----~HvKdls-~LNRdl~kVivVd~d~~~~~l~P~N~l~l~ 307 (393)
T KOG2832|consen 236 SSEQGMTVFPLLDALDPKG-YISYKLF-RG-ATKYEEG----HHVKDLS-KLNRDLQKVIVVDFDANSYKLQPENMLPLE 307 (393)
T ss_pred ecCCccchhhhHhhcCCcc-eEEEEEe-cC-cccccCc----cchhhhh-hhccccceeEEEEccccccccCcccccccC
Confidence 9999999999999999997 7899999 55 5667787 7899999 58999 999999999999999999999999
Q ss_pred ccccccCcccccCCCCCCcccccccCCCcchhhHHHHHHHHHHHhhccccCCCCchhhHHHHHHHHh
Q 000897 1075 RYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQR 1141 (1234)
Q Consensus 1075 pY~yF~~s~~q~GlpgpSl~Eid~DEdpeD~~LlsLL~fLekIHq~FFs~~~L~~~DVR~ILkeiQ~ 1141 (1234)
||.. +++|+.|.+|++||+.||+ -+.+|||++|+.+..
T Consensus 308 ~W~G----------------------n~dDt~L~dL~~FL~~ia~-------~~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 308 PWSG----------------------NDDDTSLFDLLAFLEYIAQ-------QQVEDVRPVLQSYSQ 345 (393)
T ss_pred cCCC----------------------CcccchhhhHHHHHHHHHH-------ccHHHHHHHHHHhcc
Confidence 9972 5678899999999999997 357999999987543
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.84 E-value=1.1e-20 Score=186.89 Aligned_cols=144 Identities=38% Similarity=0.522 Sum_probs=111.8
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceEEEEcCC
Q 000897 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 998 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEIVIFTAG 998 (1234)
||++|||||||||||+...+.. ++. ....+-...+......+++++|||+.+||++|.+.|+|+|||++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~ 69 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-----EWT------NRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAG 69 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-----CCC------ccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCC
Confidence 6999999999999999742111 110 00111112222334578899999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCCccccCcCCcccccccc
Q 000897 999 NKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYT 1077 (1234)
Q Consensus 999 tk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~VW~~qpdNgI~IkpY~ 1077 (1234)
.+.||+.+++.|++.+.+|. +|+++++|.. .++ .+.|+|+ .+|.+ +.+|+|||++..|..++.|+|.|+||.
T Consensus 70 ~~~~~~~il~~l~~~~~~f~-~i~~~~d~~~-~KP----~~~k~l~-~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~ 142 (148)
T smart00577 70 LRMYADPVLDLLDPKKYFGY-RRLFRDECVF-VKG----KYVKDLS-LLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWF 142 (148)
T ss_pred cHHHHHHHHHHhCcCCCEee-eEEECccccc-cCC----eEeecHH-HcCCChhcEEEEECCHHHhhcCccCEEEecCcC
Confidence 99999999999999764454 6888887753 222 3889998 56887 899999999999999999999999998
Q ss_pred ccc
Q 000897 1078 YFP 1080 (1234)
Q Consensus 1078 yF~ 1080 (1234)
++.
T Consensus 143 ~~~ 145 (148)
T smart00577 143 GDP 145 (148)
T ss_pred CCC
Confidence 754
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.80 E-value=7e-20 Score=207.31 Aligned_cols=180 Identities=29% Similarity=0.357 Sum_probs=143.1
Q ss_pred hHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc
Q 000897 909 LEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK 988 (1234)
Q Consensus 909 L~~Q~kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk 988 (1234)
+..+...-...+.+|++|||+||+|+.... ....+++... ........+||.+||+|++||..+++
T Consensus 201 l~~~~~~~~~~~k~L~l~lde~l~~S~~~~---~~~~df~~~~-----------e~~~~~~~~~v~kRp~l~~fl~~ls~ 266 (390)
T COG5190 201 LEPPVSKSTSPKKTLVLDLDETLVHSSFRY---ITLLDFLVKV-----------EISLLQHLVYVSKRPELDYFLGKLSK 266 (390)
T ss_pred ccchhhcCCCCccccccCCCccceeecccc---ccccchhhcc-----------ccccceeEEEEcCChHHHHHHhhhhh
Confidence 333333445789999999999999998532 1111111111 11111257899999999999999999
Q ss_pred CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCCccccCc
Q 000897 989 LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNK 1067 (1234)
Q Consensus 989 ~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~VW~~qp 1067 (1234)
+|++++||++.+.||++|+++||+.+ .|++|+| |.+|. ..+| .|+|||. .++++ ..+||||++|..|..+|
T Consensus 267 ~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lf-r~sc~-~~~G----~~ikDis-~i~r~l~~viiId~~p~SY~~~p 338 (390)
T COG5190 267 IHELVYFTASVKRYADPVLDILDSDK-VFSHRLF-RESCV-SYLG----VYIKDIS-KIGRSLDKVIIIDNSPASYEFHP 338 (390)
T ss_pred hEEEEEEecchhhhcchHHHhccccc-eeehhhh-cccce-eccC----chhhhHH-hhccCCCceEEeeCChhhhhhCc
Confidence 99999999999999999999999998 8999998 45564 5666 5999998 57888 99999999999999999
Q ss_pred CCcccccccccccCcccccCCCCCCcccccccCCCcchhhHHHHHHHHHHHhhccccCCCCchhhHHHHHHH
Q 000897 1068 LNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAE 1139 (1234)
Q Consensus 1068 dNgI~IkpY~yF~~s~~q~GlpgpSl~Eid~DEdpeD~~LlsLL~fLekIHq~FFs~~~L~~~DVR~ILkei 1139 (1234)
.|+|+|.+|.. ++.|..|.+++++|+.|-+ -+..||+.+|..-
T Consensus 339 ~~~i~i~~W~~----------------------d~~d~el~~ll~~le~L~~-------~~~~d~~~~l~~~ 381 (390)
T COG5190 339 ENAIPIEKWIS----------------------DEHDDELLNLLPFLEDLPD-------RDLKDVSSILQSR 381 (390)
T ss_pred cceeccCcccc----------------------cccchhhhhhccccccccc-------ccchhhhhhhhhh
Confidence 99999999972 4678999999999999975 2468999988643
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.49 E-value=4.5e-14 Score=160.63 Aligned_cols=271 Identities=25% Similarity=0.417 Sum_probs=184.7
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchh-hhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceE
Q 000897 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHD-EILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 992 (1234)
Q Consensus 914 kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~-Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEI 992 (1234)
.+-..+++.||+|||.|.+||.... .+|... +.+ +..........+....+.+++++||++..|+...++.||+
T Consensus 20 ~l~q~~~~~l~~~~~~~~~h~~~~~-~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~ 94 (390)
T COG5190 20 ALRQDKKLILVVDLDQTIIHTTVDP-NDPNNVNQSL----ERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYEL 94 (390)
T ss_pred HhhcCcccccccccccceecccccC-CCCCchhhhh----hccccchhccccccccccceeeecccccchhhhhchhcce
Confidence 3456889999999999999998543 223211 100 0000000001111223578999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCCcc---ccCcC
Q 000897 993 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVW---PHNKL 1068 (1234)
Q Consensus 993 VIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~VW---~~qpd 1068 (1234)
++||+|++.||..+++++||.|.+|..|+..++.... .-.|-+++++..+ ..+||+||++++| ..+ .
T Consensus 95 ~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~--------~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~-~ 165 (390)
T COG5190 95 HIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGS--------LSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN-S 165 (390)
T ss_pred eeEeeccccchhhhhhccccccccccccccccccccc--------chhhhhhhcCccccccccccccccccCCccchh-h
Confidence 9999999999999999999999999999998875421 4568899888888 8999999999999 443 6
Q ss_pred CcccccccccccCccc----------ccCCCC------C---------------------Cccc--------ccccCC--
Q 000897 1069 NLIVVERYTYFPCSRR----------QFGLLG------P---------------------SLLE--------IDHDER-- 1101 (1234)
Q Consensus 1069 NgI~IkpY~yF~~s~~----------q~Glpg------p---------------------Sl~E--------id~DEd-- 1101 (1234)
|.+...++..+..... .+...+ + |+.. ...+..
T Consensus 166 ~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~ 245 (390)
T COG5190 166 NFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLL 245 (390)
T ss_pred hhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhccccccc
Confidence 8888888543332111 111000 0 0000 001111
Q ss_pred ------CcchhhHHHHHHHHHHHhhccccCC--CCchhhHHHHHHHHhhhccCceeeeeccccCCCCCCCCchHHHHHHH
Q 000897 1102 ------SEDGTLASSLGVIERLHKIFFSHQS--LDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQ 1173 (1234)
Q Consensus 1102 ------peD~~LlsLL~fLekIHq~FFs~~~--L~~~DVR~ILkeiQ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAes 1173 (1234)
..+.+|..++..|.++|.-+|...+ .....|..+|.... +|++|..-++++++.+. ....|- .
T Consensus 246 ~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~---~ikDis----~ 316 (390)
T COG5190 246 QHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGV---YIKDIS----K 316 (390)
T ss_pred eeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCc---hhhhHH----h
Confidence 2356788899999888987776542 22455888998766 99999999999887642 111222 2
Q ss_pred hCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEcHHHHHH
Q 000897 1174 FGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEA 1217 (1234)
Q Consensus 1174 LGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVSPdWLed 1217 (1234)
.| ..-.-||+|+.++.+- +....+.|+.+.|+.+
T Consensus 317 i~------r~l~~viiId~~p~SY----~~~p~~~i~i~~W~~d 350 (390)
T COG5190 317 IG------RSLDKVIIIDNSPASY----EFHPENAIPIEKWISD 350 (390)
T ss_pred hc------cCCCceEEeeCChhhh----hhCccceeccCccccc
Confidence 22 3346699999887554 5566789999999997
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.37 E-value=8e-13 Score=113.93 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=54.1
Q ss_pred ceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEcHHH
Q 000897 1147 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGW 1214 (1234)
Q Consensus 1147 CvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVSPdW 1214 (1234)
|+|||||+.+. ++..++++++.+||.|..+++.+||||||....+.||++|+++||+||+++|
T Consensus 1 ~~i~~sg~~~~-----~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGK-----ERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TT-----TCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHH-----HHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 68999998654 4789999999999999999999999999999999999999999999999999
No 12
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.29 E-value=5.3e-12 Score=109.67 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=66.8
Q ss_pred HhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCC--CCHHHHHHHhcCCcEEcHHHHHH
Q 000897 1140 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL--GTDKVNWALSTGRFVVHPGWVEA 1217 (1234)
Q Consensus 1140 Q~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~--gT~KVr~Akk~GIkIVSPdWLed 1217 (1234)
+.++|+||.++|+++ + ...+..+.++++.+||++...+++.+||||+... .+.|+..|...|++||+++||++
T Consensus 2 ~~~~F~g~~f~i~~~-~----~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ 76 (78)
T PF00533_consen 2 KPKIFEGCTFCISGF-D----SDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIED 76 (78)
T ss_dssp STTTTTTEEEEESST-S----SSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHH
T ss_pred CCCCCCCEEEEEccC-C----CCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHH
Confidence 357899999999554 2 2356789999999999999999999999999987 89999999999999999999999
Q ss_pred HH
Q 000897 1218 SA 1219 (1234)
Q Consensus 1218 Cl 1219 (1234)
|+
T Consensus 77 ci 78 (78)
T PF00533_consen 77 CI 78 (78)
T ss_dssp HH
T ss_pred hC
Confidence 96
No 13
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.24 E-value=4.9e-12 Score=141.46 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=83.8
Q ss_pred HhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEcHHHHHHHH
Q 000897 1140 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASA 1219 (1234)
Q Consensus 1140 Q~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVSPdWLedCl 1219 (1234)
-.++|+|+++++||| .+|++..|...|..|||+|..|++..+|||||+.++|.||++.+-.|-.||+-+||.+|+
T Consensus 314 l~klL~GVV~VlSGf-----qNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy 388 (508)
T KOG3226|consen 314 LSKLLEGVVFVLSGF-----QNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECY 388 (508)
T ss_pred HHHhhhceEEEEecc-----cCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHH
Confidence 367899999999998 478899999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCC
Q 000897 1220 LLYRRANEQDFAI 1232 (1234)
Q Consensus 1220 k~wkRVDEsdYlL 1232 (1234)
.+.+++|-..|+|
T Consensus 389 ~~kk~lp~rrYlm 401 (508)
T KOG3226|consen 389 AQKKLLPIRRYLM 401 (508)
T ss_pred HHHhhccHHHHHh
Confidence 9999999999987
No 14
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.14 E-value=1.1e-10 Score=99.00 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=64.9
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCC-CccEEEeCCCCCHH--HHHHHhcCCcEEcHHHHHHH
Q 000897 1142 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDD-QVTHVVANSLGTDK--VNWALSTGRFVVHPGWVEAS 1218 (1234)
Q Consensus 1142 kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~-kVTHLVAt~~gT~K--Vr~Akk~GIkIVSPdWLedC 1218 (1234)
.+|+||+|||+|-+. .+.+..+++++..+||++...++. .+||+|+......+ +..|...+++||+++||.+|
T Consensus 1 ~~f~g~~~~~~g~~~----~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~ 76 (80)
T smart00292 1 KLFKGKVFVITGKFD----KNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDC 76 (80)
T ss_pred CccCCeEEEEeCCCC----CccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHH
Confidence 379999999999222 345678999999999999999999 99999999866544 57778899999999999999
Q ss_pred HHhc
Q 000897 1219 ALLY 1222 (1234)
Q Consensus 1219 lk~w 1222 (1234)
+..+
T Consensus 77 ~~~~ 80 (80)
T smart00292 77 LKAG 80 (80)
T ss_pred HHCc
Confidence 8753
No 15
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.11 E-value=2.3e-10 Score=94.85 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=62.5
Q ss_pred CceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHH-HHHHHhcCCcEEcHHHHHHHHH
Q 000897 1146 GCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDK-VNWALSTGRFVVHPGWVEASAL 1220 (1234)
Q Consensus 1146 GCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~K-Vr~Akk~GIkIVSPdWLedClk 1220 (1234)
||.|+|+|..+. +.+..+.+++..+||++..+++..+||||+......+ +..|...+++||+++||.+|+.
T Consensus 1 ~~~~~i~g~~~~----~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPS----EERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCC----cCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 789999998642 3467899999999999999999999999999876665 8888899999999999999973
No 16
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.08 E-value=6.8e-12 Score=149.69 Aligned_cols=587 Identities=22% Similarity=0.196 Sum_probs=331.3
Q ss_pred cccccccccccccccccccc----------ccccchhhh------Hhhhhhh-hHHHHHHHHHhhh--cccchhHHhhhh
Q 000897 139 IEKEEGELEEGEIELDLESE----------SNEKVSEQV------KEEMKLI-NVESIREALESVL--RGDISFEGVCSK 199 (1234)
Q Consensus 139 ~~keegeleegeid~d~~~~----------~~~~~~~~~------~~~~~~~-~~~~i~~~le~v~--~~~~sf~~~c~~ 199 (1234)
..++.+.+.+|.++.-.++. +.+...... +.+++.. .|..+++++.+.+ +...-|.|.|..
T Consensus 23 ~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~v~~~~~~~~~~~~C~H~~v~~GlC~~ 102 (635)
T KOG0323|consen 23 DLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLGRDLEKKVALISGVSSSTSCCEHFTVFGGLCAS 102 (635)
T ss_pred chhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccccchhhhhccccccccccCCccceeecccHHHH
Confidence 37889999999987643311 111111111 1135555 5667777777644 777889999999
Q ss_pred HHHHHHHHHHhhcCCCCcchhHHHHHHHhhhheeeeeeeccChhhhhhhHHHHHHHHHHhhccCCCCCChhHHHHHHHHh
Q 000897 200 LEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAML 279 (1234)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~d~l~~~~~~~~~~~~~v~~s~~~~~~~~nk~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 279 (1234)
.-..|+++..... .+-.....|++..+..++++++.||+|++.. |.++..+...++...+...|..+.
T Consensus 103 Cg~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~Dld~tllh~~~~~~l~e~~ 170 (635)
T KOG0323|consen 103 CGKDLESLQGRSF-DYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVLDLDHTLLHTILKSDLSETE 170 (635)
T ss_pred HHHHHHHhhccch-hcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeehhhhhHHHHhhccchhhhhh
Confidence 9888887655544 4447888999999999999999999998766 222222211222222222232222
Q ss_pred hhhhhcccchhhhhhhhccccCCCCCccccccccccccccCCCCCccccccCCCccCCCCCCCCccccccccccCCCCCc
Q 000897 280 SSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKV 359 (1234)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~~~plldlh~~ 359 (1234)
..+.... . .++...+.+.-++. .+++.-..|-|--+.++|..|+
T Consensus 171 ~~l~~~~----------------------~----------~~~sn~dl~~~~~~---~~~~~~~vKlRP~~~efL~~~s- 214 (635)
T KOG0323|consen 171 KYLKEEA----------------------E----------SVESNKDLFRFNPL---GHDTEYLVKLRPFVHEFLKEAN- 214 (635)
T ss_pred hhccccc----------------------c----------cccccccceeeccc---CCCceEEEEeCccHHHHHHHHH-
Confidence 2221111 0 00223333333333 4446666788988999999888
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccccccccccccccCcCCCccCCCchhhhHHHhHHHhhhcCcccccCCCCCCC
Q 000897 360 HDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSP 439 (1234)
Q Consensus 360 hd~~slpsptr~~~~~~pv~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~dalkavs~yqqk~~~~s~f~~~~~psp 439 (1234)
..++.++...++.-++...+. |..+..... +.++..++. +.+|.+.+|+.+
T Consensus 215 ---klfemhVyTmg~R~YA~~i~~----liDP~~~lF-------~dRIisrde---------------~~~~kt~dL~~~ 265 (635)
T KOG0323|consen 215 ---KLFEMHVYTMGTRDYALEIAK----LIDPEGKYF-------GDRIISRDE---------------SPFFKTLDLVLL 265 (635)
T ss_pred ---hhceeEEEeccchHHHHHHHH----HhCCCCccc-------cceEEEecC---------------CCcccccccccC
Confidence 677888888777777666655 444332211 133333333 889999999999
Q ss_pred CCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCc
Q 000897 440 TPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPV 519 (1234)
Q Consensus 440 tps~~~~~~~~d~~~evss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 519 (1234)
+|.|++-.=.+|--+-|==. ... |.+...--|--+....+..+ |-..++.+-+....|+ -...
T Consensus 266 ~p~g~smvvIIDDr~dVW~~----~~~--nLI~i~~y~yF~~~gd~nap------~~~~~~~~~~~~~~~~-----~~k~ 328 (635)
T KOG0323|consen 266 FPCGDSMVVIIDDRSDVWPD----HKR--NLIQIAPYPYFSGQGDINAP------PPLHVLRNVACSVRGA-----FFKE 328 (635)
T ss_pred CCCCCccEEEEeCccccccC----CCc--ceEEeeeeecccCcccccCC------cccccccchhcccccc-----cccc
Confidence 99998764444333332211 111 22211111110111100000 1111344444444444 4667
Q ss_pred ccCCCccCCcccccccCcccccCCCCCccCCCCCCccccccccccccccccCCCCCCchhhhhhccCCCCCccccccccc
Q 000897 520 VKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNI 599 (1234)
Q Consensus 520 ~k~~~ksrdprlr~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~d~~~~kr~~~~~~n~~~~~~~~~~ 599 (1234)
.++|+++|++++|+.+.|.+.--.++ ++..|... .+++++.++.
T Consensus 329 ~~~s~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-p~~~~~~~~~-------------------------- 372 (635)
T KOG0323|consen 329 FDPSLKSRISEVRYEDDDESNPTSYS---------VELSANPG-PLKQDGMDEF-------------------------- 372 (635)
T ss_pred cCcccccccccccccccccccCcccc---------cccccccC-cccccccccc--------------------------
Confidence 79999999999999999863211111 11111111 2222222221
Q ss_pred cCCCCccccccCCcccccccccccccccccccccCCCCCCCccCCCcccccCCCCCCCcccCccccchHHhhhhhccChH
Q 000897 600 YGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPT 679 (1234)
Q Consensus 600 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~llk~~avnp~ 679 (1234)
T Consensus 373 -------------------------------------------------------------------------------- 372 (635)
T KOG0323|consen 373 -------------------------------------------------------------------------------- 372 (635)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhhhhHHHhhhccCCCCCCcCCCCCCCCCCCcccccccCCCCCCCCCcccCceecccCCCccccccccccc
Q 000897 680 MLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQR 759 (1234)
Q Consensus 680 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~irmkprdprr~lh~~~~~~ 759 (1234)
.|. . -+|..++|+++||++|++|.-+.-.-+-
T Consensus 373 ------------------------------~~~-~-----------------~~~~~~~~s~~~~~~de~~~D~~L~~~~ 404 (635)
T KOG0323|consen 373 ------------------------------VPE-E-----------------NAPEARSGSYREKKSDESDEDGELANLL 404 (635)
T ss_pred ------------------------------ccc-c-----------------cchhhcccccccccccccccchhHHHHh
Confidence 000 0 3456889999999999999755322211
Q ss_pred c--CCCCCccccCCCCCCCCCCCccchhhhhccCCCCCCcccccc----cCCCchhhHHhhcccccccccccCccCCCCC
Q 000897 760 S--GSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQS----VLQPDITQQFTKNLKHIADFMSVSQPLTSEP 833 (1234)
Q Consensus 760 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~t~~~~~i~d~~s~s~~~~~~~ 833 (1234)
. .......+.-.. ...++-+..|++..-.+..++.+-.-- -..|....+++ +|++-++|+.....
T Consensus 405 kvl~~vH~~ff~~~~---~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~------s~~~~~~~~~g~vs 475 (635)
T KOG0323|consen 405 KVLKPVHKGFFAKYD---EVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDES------ADILGVAQQLGAVS 475 (635)
T ss_pred hhhcccchhhhhccc---cccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcch------hhhhhhhhccccee
Confidence 1 111221221111 112233334454444444333222211 12233333333 67777777655222
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccchhhcccchhHHHHhhHHHHhhhHHHH
Q 000897 834 MVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQK 913 (1234)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~~~~fd~L~~g~~~~q~a~i~re~akrL~~Q~ 913 (1234)
++. ++...-+. ...++..........-...-.+.+.....-+..|+..++.+..+.+.+++.++++...+...|.
T Consensus 476 ~~~----~~~~~th~-i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~~~~~~~~~a~~~~~~ 550 (635)
T KOG0323|consen 476 APD----VSDKTTHL-IAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEPLDDDQRAAIRRESLARLYEQE 550 (635)
T ss_pred ccc----ccchhhhH-HhhccCcceeeccccccceeEechhHHHHHHHHhcchhcccccccccccchhcccchhhhhhhh
Confidence 211 11111110 0122233333333323332223336677888899999999999999999999888888888887
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceEE
Q 000897 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 993 (1234)
Q Consensus 914 kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEIV 993 (1234)
++.. .++.++.++|++++-+..+..++-.+..++...++.+...++..+++...++.+++.+ +++....|+..
T Consensus 551 ~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~ 623 (635)
T KOG0323|consen 551 KVFP-PKLSLVAPLDNELQESGKENEVNSRTELLDETGEDVSSEPPDRHLERELPSSMWIKLL------LEKASKLYELH 623 (635)
T ss_pred cccc-hhhhccCccchhhhhccccchhcccchhhccccCcccCCCCCccchhhccccCccccc------hhhhhhHHHhc
Confidence 7777 8999999999999987765444444444555555555555666777777778888888 88889999999
Q ss_pred EEcCCcHHHHH
Q 000897 994 LYTMGNKLYAT 1004 (1234)
Q Consensus 994 IFTAGtk~YAd 1004 (1234)
.||++.+.||.
T Consensus 624 ~~~s~~~~~~~ 634 (635)
T KOG0323|consen 624 LYTSGNKHRAE 634 (635)
T ss_pred cCCcccccccC
Confidence 99999888764
No 17
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.41 E-value=3.7e-07 Score=112.93 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=77.4
Q ss_pred HhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCC-----CCHHHHHHHhcCCcEEcHHH
Q 000897 1140 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL-----GTDKVNWALSTGRFVVHPGW 1214 (1234)
Q Consensus 1140 Q~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~-----gT~KVr~Akk~GIkIVSPdW 1214 (1234)
..++|.|++|||+|.++. .+..+.++++.+||++...+ ..+||+|++.. ++.|+++|++.||+||+.+|
T Consensus 186 ~~kpL~G~~fviTGtl~~-----sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~ 259 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR-----THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAW 259 (815)
T ss_pred cCCCcCCcEEEEeCCCCC-----CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHH
Confidence 456899999999998753 35688899999999999999 77889999862 35899999999999999999
Q ss_pred HHHHHHhccCCCCCCCCC
Q 000897 1215 VEASALLYRRANEQDFAI 1232 (1234)
Q Consensus 1215 LedClk~wkRVDEsdYlL 1232 (1234)
|.+|+...+.+++..|.+
T Consensus 260 L~d~i~~~k~~~~~~y~l 277 (815)
T PLN03122 260 LIDSIEKQEAQPLEAYDV 277 (815)
T ss_pred HHHHHhcCCcccchhhhh
Confidence 999999999999999987
No 18
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.35 E-value=5.6e-07 Score=113.19 Aligned_cols=88 Identities=8% Similarity=0.072 Sum_probs=77.6
Q ss_pred HhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC---CCCHHHHHHHhcCCcEEcHHHHH
Q 000897 1140 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---LGTDKVNWALSTGRFVVHPGWVE 1216 (1234)
Q Consensus 1140 Q~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~---~gT~KVr~Akk~GIkIVSPdWLe 1216 (1234)
..++|.|++|+++|.|+. ....+.++++.+||++..+++..|||||+.. ....|+++|.+.||+||+.+||.
T Consensus 390 ~~~~l~~~~i~i~G~~~~-----~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ 464 (981)
T PLN03123 390 ESEFLGDLKVSIVGASKE-----KVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLV 464 (981)
T ss_pred cCCCcCCeEEEEecCCCC-----cHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHH
Confidence 357899999999998864 2356678899999999999999999999985 45788999999999999999999
Q ss_pred HHHHhccCCCCCCCCC
Q 000897 1217 ASALLYRRANEQDFAI 1232 (1234)
Q Consensus 1217 dClk~wkRVDEsdYlL 1232 (1234)
+|.....++++..|.+
T Consensus 465 ds~~~~~~~p~~~y~~ 480 (981)
T PLN03123 465 DCFKKKKKLPFDKYKL 480 (981)
T ss_pred HHHhccccCcchhhhh
Confidence 9999999999998865
No 19
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.06 E-value=3.6e-06 Score=104.06 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC-CCCHHHHHHHhcCCc
Q 000897 1130 VDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRF 1208 (1234)
Q Consensus 1130 ~DVR~ILkeiQ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~-~gT~KVr~Akk~GIk 1208 (1234)
.+.+..-..++..+|.||.||.+|+- ..+++.+..++..|||++...++..|+|++... ..+.||++|++|+++
T Consensus 90 ~~~~~l~~~~~~p~~~~~~Vc~tgl~-----~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~ 164 (811)
T KOG1929|consen 90 RLLDPLRDTMKCPGFFGLKVCLTGLS-----GDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIP 164 (811)
T ss_pred ccCccchhhhcCCcccceEEEecccc-----hHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCc
Confidence 34555667788999999999999983 235788999999999999999999998888875 566999999999999
Q ss_pred EEcHHHHHHHHHhccCCCCCCCCCCC
Q 000897 1209 VVHPGWVEASALLYRRANEQDFAIKP 1234 (1234)
Q Consensus 1209 IVSPdWLedClk~wkRVDEsdYlL~P 1234 (1234)
||+.+|+++|......++...|.+.|
T Consensus 165 v~~~~w~~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 165 VVSDDWLFDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred cccHHHHhhhhccccccccccccccc
Confidence 99999999999999999999998865
No 20
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.66 E-value=1.9e-05 Score=97.78 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=85.5
Q ss_pred hhHHHHHHHHhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEE
Q 000897 1131 DVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVV 1210 (1234)
Q Consensus 1131 DVR~ILkeiQ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIV 1210 (1234)
-+|.+....=.++|.||+|++++. +.+++.-+...+..+||.....|....||||+++.+..|+..|.+|+++||
T Consensus 481 ~~~~vp~~~l~~~~e~~~~~~s~~-----~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~v 555 (811)
T KOG1929|consen 481 NLRPVPAAALSQPFENLTISNSQS-----AEAEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIV 555 (811)
T ss_pred hcCcchhhcccccccCceEEeeec-----hHHHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCcc
Confidence 466777777788999999999874 223456677889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhccCCCCCCCCC
Q 000897 1211 HPGWVEASALLYRRANEQDFAI 1232 (1234)
Q Consensus 1211 SPdWLedClk~wkRVDEsdYlL 1232 (1234)
+|+||++|.++.+..+...|.+
T Consensus 556 T~~wL~e~~rq~~~~~~e~~l~ 577 (811)
T KOG1929|consen 556 TPDWLYECVRQNKGERNEGFLN 577 (811)
T ss_pred ChhHHHhhccccCcccceeecc
Confidence 9999999999999999998876
No 21
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.47 E-value=3.7e-05 Score=92.81 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=71.2
Q ss_pred hhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEcHHHHHHHHH
Q 000897 1141 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASAL 1220 (1234)
Q Consensus 1141 ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVSPdWLedClk 1220 (1234)
...|+|+++||+|+.+.. ..+..+++.|||.|..+...++||+||...++.|+..|+-. .+++.|+||.+|
T Consensus 116 ~~~m~~vvlcfTg~rkk~------e~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~rp~wv~~a-- 186 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERKKK------EELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTMRPDWVTEA-- 186 (850)
T ss_pred chhhcCceeeeeccchhh------HHHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-cceechHhhhhh--
Confidence 347999999999987652 38999999999999999999999999999999999877766 999999999999
Q ss_pred hccCCCCCCCCC
Q 000897 1221 LYRRANEQDFAI 1232 (1234)
Q Consensus 1221 ~wkRVDEsdYlL 1232 (1234)
|++.++..|.+
T Consensus 187 -w~~rn~~yfda 197 (850)
T KOG3524|consen 187 -WKHRNDSYFDA 197 (850)
T ss_pred -hcCcchhhhhh
Confidence 77777666654
No 22
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.43 E-value=0.00026 Score=87.08 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=66.5
Q ss_pred hhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEcHHHHHHHH
Q 000897 1141 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASA 1219 (1234)
Q Consensus 1141 ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVSPdWLedCl 1219 (1234)
..+|.|.++||||.|+.. .|..+.++++++||++...++++++.|||....+.|..+|.+.||+|++.+.+.+-+
T Consensus 591 ~~~l~gktfV~TG~l~~~----~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGY----SRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSYV 665 (669)
T ss_pred CCccCCcEEEEecccCCC----CHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHHh
Confidence 346999999999988642 478899999999999999999999999999877799999999999999998887643
No 23
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.41 E-value=0.00048 Score=84.83 Aligned_cols=74 Identities=19% Similarity=0.090 Sum_probs=65.8
Q ss_pred hccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEcHHHHHHHHH
Q 000897 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASAL 1220 (1234)
Q Consensus 1143 ILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVSPdWLedClk 1220 (1234)
.|.|.++||||.+... .+..+..+++.+||.++..++.+++.|||....+.|..+|.+.||+|++.+.+.+.+.
T Consensus 590 ~~~g~~~v~TG~l~~~----~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~ 663 (665)
T PRK07956 590 DLAGKTVVLTGTLEQL----SRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLG 663 (665)
T ss_pred CccccEEEEeCCCCCC----CHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHh
Confidence 3999999999988541 3678999999999999999999999999998777999999999999999988877654
No 24
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.41 E-value=0.00033 Score=79.00 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=62.4
Q ss_pred hccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCC--HHHHHHHhcCCcEEcHHHHHHHH
Q 000897 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT--DKVNWALSTGRFVVHPGWVEASA 1219 (1234)
Q Consensus 1143 ILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT--~KVr~Akk~GIkIVSPdWLedCl 1219 (1234)
+|.|-+|||||.+.. .+.+++++++.+||+|...++++++.|||....+ .|.++|.+.||+|++.+=+.+-+
T Consensus 232 l~~g~~~v~TG~l~~-----~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 232 LVQGMRVALSAEVSR-----THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred ccCCCEEEEecCCCC-----CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 479999999998752 4688999999999999999999999999997544 79999999999999987665543
No 25
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.40 E-value=0.00071 Score=83.63 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=65.6
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCC-HHHHHHHhcCCcEEcHHHHHHHHH
Q 000897 1142 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT-DKVNWALSTGRFVVHPGWVEASAL 1220 (1234)
Q Consensus 1142 kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT-~KVr~Akk~GIkIVSPdWLedClk 1220 (1234)
..|.|.++||||.+... .+..+..+++.+||++...++.+++.||+....+ .|.++|.+.||+|++.+.+.+-+.
T Consensus 608 ~~l~g~~~v~TG~l~~~----~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~ 683 (689)
T PRK14351 608 DALDGLTFVFTGSLSGY----TRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLA 683 (689)
T ss_pred CCCCCcEEEEccCCCCC----CHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHH
Confidence 35999999999988642 4688999999999999999999999999997544 899999999999999988877555
No 26
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.38 E-value=0.00025 Score=65.12 Aligned_cols=62 Identities=24% Similarity=0.204 Sum_probs=49.9
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcC-ceEEEEcCCcH
Q 000897 922 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNK 1000 (1234)
Q Consensus 922 TLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~-YEIVIFTAGtk 1000 (1234)
++|||+|+||+...... +. ...+..+|++.+||+++.+. +.++|+|++.+
T Consensus 1 ~~vfD~D~tl~~~~~~~-------~~----------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~ 51 (139)
T cd01427 1 AVLFDLDGTLLDSEPGI-------AE----------------------IEELELYPGVKEALKELKEKGIKLALATNKSR 51 (139)
T ss_pred CeEEccCCceEccCccc-------cc----------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchH
Confidence 48999999999875210 00 12467899999999999986 99999999999
Q ss_pred HHHHHHHHHhcC
Q 000897 1001 LYATEMAKVLDP 1012 (1234)
Q Consensus 1001 ~YAd~VLdiLDP 1012 (1234)
.++..+++.+.-
T Consensus 52 ~~~~~~~~~~~~ 63 (139)
T cd01427 52 REVLELLEELGL 63 (139)
T ss_pred HHHHHHHHHcCC
Confidence 999999988754
No 27
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.24 E-value=0.00073 Score=75.88 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=60.4
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC---------CCCHHHHHHHhc-----CC
Q 000897 1142 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---------LGTDKVNWALST-----GR 1207 (1234)
Q Consensus 1142 kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~---------~gT~KVr~Akk~-----GI 1207 (1234)
..|.|-++||||.+.. -.+.++..+++.+||.|...++.+++.||+.. ..+.|+++|.+. ||
T Consensus 219 ~~l~g~~~vfTG~l~~----~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i 294 (309)
T PRK06195 219 TAFKEEVVVFTGGLAS----MTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNI 294 (309)
T ss_pred ccccCCEEEEccccCC----CCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCc
Confidence 3699999999998853 24688999999999999999999999999984 346899999886 89
Q ss_pred cEEcHHHHHH
Q 000897 1208 FVVHPGWVEA 1217 (1234)
Q Consensus 1208 kIVSPdWLed 1217 (1234)
+|++.+=+++
T Consensus 295 ~ii~E~~f~~ 304 (309)
T PRK06195 295 KFLNEEEFLQ 304 (309)
T ss_pred EEecHHHHHH
Confidence 9998754333
No 28
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.00098 Score=81.50 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=65.1
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEcHHHHHH
Q 000897 1142 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEA 1217 (1234)
Q Consensus 1142 kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVSPdWLed 1217 (1234)
.+|.|.++||||.++. -.|.....+++.+||+++..+++++..||+...-+.|+.+|++.||+|.+.+|+.+
T Consensus 593 ~~l~gkt~V~TGtL~~----~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ 664 (667)
T COG0272 593 SPLAGKTFVLTGTLEG----MSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLA 664 (667)
T ss_pred cccCCCEEEEeccCCC----CCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHH
Confidence 5699999999999873 24678889999999999999999999999999888899999999999999988765
No 29
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.01 E-value=0.00052 Score=85.22 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=65.6
Q ss_pred HHHHHHh-hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCC-cc-------------------------
Q 000897 1135 ILAAEQR-KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQ-VT------------------------- 1187 (1234)
Q Consensus 1135 ILkeiQ~-kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~k-VT------------------------- 1187 (1234)
.|.+... .||.||+++|++.+-. ...+..-.+.+||.+....-.. .+
T Consensus 916 ~lEe~~gkniFd~cvF~lTsa~~s------d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qa 989 (1176)
T KOG3548|consen 916 MLEEAIGKNIFDGCVFMLTSANRS------DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQA 989 (1176)
T ss_pred cchhhhCcchhcceeEEEeccccc------hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccce
Confidence 4444444 7999999999997543 2344444555777664432211 11
Q ss_pred EEEeCC-CCCHHHHHHHhcCCcEEcHHHHHHHHHhccCCCCCCCCC
Q 000897 1188 HVVANS-LGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAI 1232 (1234)
Q Consensus 1188 HLVAt~-~gT~KVr~Akk~GIkIVSPdWLedClk~wkRVDEsdYlL 1232 (1234)
-||+-. ..|.||..|++.||++||+.||.+|++.++.++-.+|+|
T Consensus 990 lLIsdth~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLL 1035 (1176)
T KOG3548|consen 990 LLISDTHYRTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLL 1035 (1176)
T ss_pred eEeehhhhHHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcc
Confidence 233322 468899999999999999999999999999999999987
No 30
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.01 E-value=0.001 Score=81.79 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=61.3
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEcHHH
Q 000897 1142 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGW 1214 (1234)
Q Consensus 1142 kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVSPdW 1214 (1234)
.+|.|.++||||.+.. ..+..+..+++.+||++...++.+++.||+....+.|+++|.+.||+|++.+.
T Consensus 583 ~~l~gk~~v~TG~l~~----~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQ----MSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CCccCcEEEEeccCCC----CCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 4699999999998864 24678999999999999999999999999998666799999999999998764
No 31
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.89 E-value=0.002 Score=72.96 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=59.6
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEec-CCHHHHHHHhhcC-ceE
Q 000897 915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FEM 992 (1234)
Q Consensus 915 LLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklR-PGLdEFLeeLSk~-YEI 992 (1234)
+.-+....+|+|||+|||.... -|.+| ||+.++|++|.+. +.+
T Consensus 121 ~~~~~~kvIvFDLDgTLi~~~~-----------------------------------~v~irdPgV~EaL~~LkekGikL 165 (301)
T TIGR01684 121 KVFEPPHVVVFDLDSTLITDEE-----------------------------------PVRIRDPRIYDSLTELKKRGCIL 165 (301)
T ss_pred cccccceEEEEecCCCCcCCCC-----------------------------------ccccCCHHHHHHHHHHHHCCCEE
Confidence 4456777999999999996531 24588 9999999999986 899
Q ss_pred EEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 000897 993 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1234)
Q Consensus 993 VIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRD 1025 (1234)
+|+|.+.+.++..+++.++-.+ +|. .|++.+
T Consensus 166 aIaTS~~Re~v~~~L~~lGLd~-YFd-vIIs~G 196 (301)
T TIGR01684 166 VLWSYGDRDHVVESMRKVKLDR-YFD-IIISGG 196 (301)
T ss_pred EEEECCCHHHHHHHHHHcCCCc-ccC-EEEECC
Confidence 9999999999999999988775 664 355443
No 32
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.86 E-value=0.00074 Score=66.44 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=53.2
Q ss_pred EecCCHHHHHHHhhc-CceEEEEcCC-cHHHHHHHHHHhcCCC------ceeeeeeeecCCCCCCCCCCCCCCccccCcc
Q 000897 974 KLRPGIWTFLERASK-LFEMHLYTMG-NKLYATEMAKVLDPKG------VLFAGRVISRGDDGDPFDGDERVPKSKDLEG 1045 (1234)
Q Consensus 974 klRPGLdEFLeeLSk-~YEIVIFTAG-tk~YAd~VLdiLDP~g------~LFs~RIySRDdc~~~~dG~Er~~~iKDLsr 1045 (1234)
++.||+.++|+++.+ .+.++|.|++ .+.|+..+++.+.+.+ .+|.. ++..++. + .+..+.+=+.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~-----p-kp~~~~~a~~- 100 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWL-----P-KSPRLVEIAL- 100 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCC-----c-HHHHHHHHHH-
Confidence 578999999999964 7999999999 9999999998876311 23433 2211110 0 1112333333
Q ss_pred ccC--CC-CeEEEEeCCCC
Q 000897 1046 VLG--ME-SAVVIIDDSVR 1061 (1234)
Q Consensus 1046 VLG--rd-s~VVIVDDsp~ 1061 (1234)
.+| .. +.+|+|||++.
T Consensus 101 ~lg~~~~p~~~l~igDs~~ 119 (128)
T TIGR01681 101 KLNGVLKPKSILFVDDRPD 119 (128)
T ss_pred HhcCCCCcceEEEECCCHh
Confidence 457 55 88999999964
No 33
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=96.79 E-value=0.0028 Score=78.29 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=67.4
Q ss_pred HhhhccCceee-eeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEe--CCCCCHHHHHHHhcCCcEEcHHHHH
Q 000897 1140 QRKILAGCRIV-FSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVA--NSLGTDKVNWALSTGRFVVHPGWVE 1216 (1234)
Q Consensus 1140 Q~kILkGCvIv-FSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVA--t~~gT~KVr~Akk~GIkIVSPdWLe 1216 (1234)
+..+|.|..+| ++|.- ..+..+.+.+++..+||.+...+.+..||.|+ ....+.+-.+|+++++-||+|.||+
T Consensus 630 ~s~if~gl~f~Vlsgt~----~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wll 705 (881)
T KOG0966|consen 630 ISNIFDGLEFCVLSGTS----ETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLL 705 (881)
T ss_pred hhhhhcCeeEEEecCCc----ccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHH
Confidence 46789999984 55541 12234688999999999999999999999997 3455666667888899999999999
Q ss_pred HHHHhccCCCCCC
Q 000897 1217 ASALLYRRANEQD 1229 (1234)
Q Consensus 1217 dClk~wkRVDEsd 1229 (1234)
+|+...+.++-..
T Consensus 706 dcc~~~~l~p~~P 718 (881)
T KOG0966|consen 706 DCCKKQRLLPWLP 718 (881)
T ss_pred HHHhhhhcccccc
Confidence 9999877666443
No 34
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=96.74 E-value=0.0027 Score=71.98 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=59.4
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEec-CCHHHHHHHhhcC-ceE
Q 000897 915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FEM 992 (1234)
Q Consensus 915 LLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklR-PGLdEFLeeLSk~-YEI 992 (1234)
+.-..+..+|+|||+|||.... -|.+| |++.++|++|.+. +.+
T Consensus 123 ~~~~~~~~i~~D~D~TL~~~~~-----------------------------------~v~irdp~V~EtL~eLkekGikL 167 (303)
T PHA03398 123 LVWEIPHVIVFDLDSTLITDEE-----------------------------------PVRIRDPFVYDSLDELKERGCVL 167 (303)
T ss_pred eEeeeccEEEEecCCCccCCCC-----------------------------------ccccCChhHHHHHHHHHHCCCEE
Confidence 4556778999999999997531 14588 9999999999975 899
Q ss_pred EEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 000897 993 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1234)
Q Consensus 993 VIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRD 1025 (1234)
.|+|+|.+.++..+++.+.-.+ +|.. +++.+
T Consensus 168 aIvTNg~Re~v~~~Le~lgL~~-yFDv-II~~g 198 (303)
T PHA03398 168 VLWSYGNREHVVHSLKETKLEG-YFDI-IICGG 198 (303)
T ss_pred EEEcCCChHHHHHHHHHcCCCc-cccE-EEECC
Confidence 9999999999999999888764 6643 55433
No 35
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.60 E-value=0.0028 Score=66.53 Aligned_cols=100 Identities=12% Similarity=0.010 Sum_probs=64.6
Q ss_pred eEEEEecCCHHHHHHHhh-cCceEEEEcCC-cHHHHHHHHHHhcCC--C------ceeeeeeeecCCCCCCCCCCCCCCc
Q 000897 970 GMWTKLRPGIWTFLERAS-KLFEMHLYTMG-NKLYATEMAKVLDPK--G------VLFAGRVISRGDDGDPFDGDERVPK 1039 (1234)
Q Consensus 970 ~~yVklRPGLdEFLeeLS-k~YEIVIFTAG-tk~YAd~VLdiLDP~--g------~LFs~RIySRDdc~~~~dG~Er~~~ 1039 (1234)
..-+.++||+.++|+.|. +.+.+.|.|+. ...|+..+++.++-. | .+|.. +++-++. ...... ...
T Consensus 41 ~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~-~~~kp~--~~i 116 (174)
T TIGR01685 41 GTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDD-RIEIYKP-NKAKQL--EMI 116 (174)
T ss_pred CCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhcee-eeeccCC-chHHHH--HHH
Confidence 345789999999999997 56999999988 999999999998754 2 46765 3432221 000000 001
Q ss_pred cccCcccc--CCC-CeEEEEeCCCCccccCcCCcccc
Q 000897 1040 SKDLEGVL--GME-SAVVIIDDSVRVWPHNKLNLIVV 1073 (1234)
Q Consensus 1040 iKDLsrVL--Grd-s~VVIVDDsp~VW~~qpdNgI~I 1073 (1234)
.+.+...+ |.. +.+|+|||++.-...-..+++.+
T Consensus 117 ~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~ 153 (174)
T TIGR01685 117 LQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTS 153 (174)
T ss_pred HHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEE
Confidence 12222222 344 78999999997665444566554
No 36
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.60 E-value=0.0027 Score=80.45 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=64.8
Q ss_pred ceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC-CCCHHHHHHHhcCCcEEcHHHHHHHHHhccCC
Q 000897 1147 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRFVVHPGWVEASALLYRRA 1225 (1234)
Q Consensus 1147 CvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~-~gT~KVr~Akk~GIkIVSPdWLedClk~wkRV 1225 (1234)
..+.|+++.- ...+...++.+|+.|... ..+.||+|+.+ ..|.|+-.|+..|++||+++||.+|.+.+..+
T Consensus 660 ~~~lfs~~~~-------~~~~k~~~k~lg~s~~ss-~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~ 731 (896)
T KOG2043|consen 660 IEVLFSDKND-------GKNYKLAKKFLGGSVASS-DSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKL 731 (896)
T ss_pred eeeeeeeccC-------chhhhhHHhhccceeecc-cccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccc
Confidence 6678888632 223556678888788755 46899999997 46999999999999999999999999999999
Q ss_pred CCCCCCC
Q 000897 1226 NEQDFAI 1232 (1234)
Q Consensus 1226 DEsdYlL 1232 (1234)
+|..|.+
T Consensus 732 dek~yil 738 (896)
T KOG2043|consen 732 DEKPYIL 738 (896)
T ss_pred cCccccc
Confidence 9999987
No 37
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.44 E-value=0.011 Score=57.29 Aligned_cols=101 Identities=17% Similarity=0.078 Sum_probs=63.4
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEcCCc
Q 000897 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 999 (1234)
Q Consensus 921 LTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFTAGt 999 (1234)
+.|+||+|+||++... ..++. -+..+.|++.++|++|.+ .|.++|.|++.
T Consensus 1 k~~~~D~dgtL~~~~~--~~~~~---------------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVP--YVDDE---------------------------DERILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred CEEEEeCCCceecCCC--CCCCH---------------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 3699999999996421 01110 124578999999999975 59999999999
Q ss_pred --------HHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCcccc-CCC-CeEEEEeCC
Q 000897 1000 --------KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME-SAVVIIDDS 1059 (1234)
Q Consensus 1000 --------k~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVL-Grd-s~VVIVDDs 1059 (1234)
..++..+++.+.-. ++. ++....+ .++ ....+.+=++ .+ +.+ +.+|+|+|+
T Consensus 52 ~~~~~~~~~~~~~~~l~~~~l~--~~~--~~~~~~~---~KP-~~~~~~~~~~-~~~~~~~~~~v~IGD~ 112 (132)
T TIGR01662 52 GIGRGKFSSGRVARRLEELGVP--IDV--LYACPHC---RKP-KPGMFLEALK-RFNEIDPEESVYVGDQ 112 (132)
T ss_pred cccccHHHHHHHHHHHHHCCCC--EEE--EEECCCC---CCC-ChHHHHHHHH-HcCCCChhheEEEcCC
Confidence 88888888887643 222 2222211 111 1112223333 45 355 789999994
No 38
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=96.17 E-value=0.0056 Score=75.26 Aligned_cols=80 Identities=26% Similarity=0.337 Sum_probs=66.1
Q ss_pred cCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC------CCCHHHHHHHhcCCcEEcHHHHHHH
Q 000897 1145 AGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS------LGTDKVNWALSTGRFVVHPGWVEAS 1218 (1234)
Q Consensus 1145 kGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~------~gT~KVr~Akk~GIkIVSPdWLedC 1218 (1234)
+-.+.+.+|.-|. +...+.+.|.. ++...++..|||+|+.- .+|.||..++..|.||++.+|+.+|
T Consensus 477 kk~~~~~s~l~p~-----ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s 548 (684)
T KOG4362|consen 477 KKLVLLVSGLTPS-----EKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLAS 548 (684)
T ss_pred cceeeeeccCCcc-----hHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHH
Confidence 3345677787664 23456666665 77788889999999983 4699999999999999999999999
Q ss_pred HHhccCCCCCCCCC
Q 000897 1219 ALLYRRANEQDFAI 1232 (1234)
Q Consensus 1219 lk~wkRVDEsdYlL 1232 (1234)
+...+.++|..|.|
T Consensus 549 ~k~~~~~~eepfEl 562 (684)
T KOG4362|consen 549 LKLRKWVSEEPFEL 562 (684)
T ss_pred HHhcCCCCCCCeeE
Confidence 99999999999987
No 39
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.09 E-value=0.005 Score=73.29 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=64.2
Q ss_pred hhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEeccc----------CCCccEEEeCCCCC-HHHHHHHhcCCcEE
Q 000897 1142 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHI----------DDQVTHVVANSLGT-DKVNWALSTGRFVV 1210 (1234)
Q Consensus 1142 kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdI----------d~kVTHLVAt~~gT-~KVr~Akk~GIkIV 1210 (1234)
.+|+||+++++.-+|. ..|.=+|..+||.|.++- +..+||=|+..++- .+| .|...|
T Consensus 326 slF~glkFfl~reVPr-------esL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-----~gR~Yv 393 (570)
T KOG2481|consen 326 SLFSGLKFFLNREVPR-------ESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-----IGRTYV 393 (570)
T ss_pred HHhhcceeeeeccCch-------HHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-----eeeeee
Confidence 4899999999987764 567778999999998882 34679999988762 122 478899
Q ss_pred cHHHHHHHHHhccCCCCCCCCC
Q 000897 1211 HPGWVEASALLYRRANEQDFAI 1232 (1234)
Q Consensus 1211 SPdWLedClk~wkRVDEsdYlL 1232 (1234)
.|+||+||+....+++-..|..
T Consensus 394 QPQWvfDsvNar~llpt~~Y~~ 415 (570)
T KOG2481|consen 394 QPQWVFDSVNARLLLPTEKYFP 415 (570)
T ss_pred cchhhhhhccchhhccHhhhCC
Confidence 9999999999999999888864
No 40
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.03 E-value=0.0052 Score=67.21 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=83.2
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcC-ceEEEE
Q 000897 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLY 995 (1234)
Q Consensus 917 s~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~-YEIVIF 995 (1234)
..++..+++|+|+||....... +. +|.. ..-....|++.++|+++.+. +.++|.
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~~---~~--~~~~--------------------~~~~~~~~~~~~~l~~l~~~g~~i~i~ 209 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGRS---PY--DWTK--------------------VKEDKPNPMVVELVKMYKAAGYEIIVV 209 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCCC---cc--chhh--------------------cccCCCChhHHHHHHHHHhCCCEEEEE
Confidence 4457899999999999754211 10 1110 01235789999999999765 999999
Q ss_pred cCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCC----CC-CCCCCccccCccccCC-C-CeEEEEeCCCCccccCcC
Q 000897 996 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPF----DG-DERVPKSKDLEGVLGM-E-SAVVIIDDSVRVWPHNKL 1068 (1234)
Q Consensus 996 TAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~----dG-~Er~~~iKDLsrVLGr-d-s~VVIVDDsp~VW~~qpd 1068 (1234)
|+....++..+++.|+-.+.+|.. ++..+.+..+. .+ ..+..+.+-|.+ ++. . ..+|+|||++..-..-..
T Consensus 210 T~r~~~~~~~~l~~l~~~~~~f~~-i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~-~~~~~~~~~~~vgD~~~d~~~a~~ 287 (300)
T PHA02530 210 SGRDGVCEEDTVEWLRQTDIWFDD-LIGRPPDMHFQREQGDKRPDDVVKEEIFWE-KIAPKYDVLLAVDDRDQVVDMWRR 287 (300)
T ss_pred eCCChhhHHHHHHHHHHcCCchhh-hhCCcchhhhcccCCCCCCcHHHHHHHHHH-HhccCceEEEEEcCcHHHHHHHHH
Confidence 999999999999999988767764 55444211000 00 001122333443 344 3 789999999976554445
Q ss_pred Ccccc
Q 000897 1069 NLIVV 1073 (1234)
Q Consensus 1069 NgI~I 1073 (1234)
+||.+
T Consensus 288 ~Gi~~ 292 (300)
T PHA02530 288 IGLEC 292 (300)
T ss_pred hCCeE
Confidence 66654
No 41
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.01 E-value=0.018 Score=59.36 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=65.9
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEcCC-
Q 000897 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG- 998 (1234)
Q Consensus 921 LTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFTAG- 998 (1234)
+.|.||.|+||++...+ .. + .. ..-++++-||+.++|++|.+ .|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~----~~----~-----------------~~-~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS----DF----Q-----------------VD-ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred CEEEEeCCCCccccCCC----cc----c-----------------cC-CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 57999999999985321 00 0 00 00146788999999999986 5999999996
Q ss_pred --------------cHHHHHHHHHHhcCCCceeeeeeee----cCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCC
Q 000897 999 --------------NKLYATEMAKVLDPKGVLFAGRVIS----RGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDS 1059 (1234)
Q Consensus 999 --------------tk~YAd~VLdiLDP~g~LFs~RIyS----RDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDs 1059 (1234)
...|+..+++.++-. |...+++ .+++. ..++. . ..+..+-..++.+ +.+++|+|+
T Consensus 56 g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~-~~KP~-~-~~~~~~~~~~~~~~~e~l~IGD~ 129 (161)
T TIGR01261 56 GLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCD-CRKPK-I-KLLEPYLKKNLIDKARSYVIGDR 129 (161)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCC-CCCCC-H-HHHHHHHHHcCCCHHHeEEEeCC
Confidence 356777777777654 6554454 22221 12211 0 0111111123545 789999998
Q ss_pred C
Q 000897 1060 V 1060 (1234)
Q Consensus 1060 p 1060 (1234)
.
T Consensus 130 ~ 130 (161)
T TIGR01261 130 E 130 (161)
T ss_pred H
Confidence 4
No 42
>COG5275 BRCT domain type II [General function prediction only]
Probab=95.93 E-value=0.02 Score=62.54 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=65.1
Q ss_pred HHHhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCC-CCCHHHHHHHhcCCcEEcHHHHH
Q 000897 1138 AEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRFVVHPGWVE 1216 (1234)
Q Consensus 1138 eiQ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~-~gT~KVr~Akk~GIkIVSPdWLe 1216 (1234)
+..+..|+|.+|+|+|+++. -.+.....++..+||+|+.....++|.||+.. .|..|+..+++.+|+++..+-+.
T Consensus 151 eg~~~cL~G~~fVfTG~l~T----lsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~ 226 (276)
T COG5275 151 EGERECLKGKVFVFTGDLKT----LSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFD 226 (276)
T ss_pred CCCcccccccEEEEeccccc----ccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHH
Confidence 44567899999999999873 24567788999999999999999999999986 67889999999999999987665
Q ss_pred H
Q 000897 1217 A 1217 (1234)
Q Consensus 1217 d 1217 (1234)
.
T Consensus 227 ~ 227 (276)
T COG5275 227 S 227 (276)
T ss_pred H
Confidence 4
No 43
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.88 E-value=0.03 Score=57.90 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=46.3
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhh-cCceEEEEcC
Q 000897 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM 997 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLS-k~YEIVIFTA 997 (1234)
++.+++||+|+||+-+.... ..+. .|. -|..+-||+.++|++|. +.|.++|.|+
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~-~~~~--------------~~~----------~~~~~~pgv~e~L~~Lk~~G~~l~I~TN 66 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGK-VFPT--------------SAS----------DWRFLYPEIPAKLQELDDEGYKIVIFTN 66 (166)
T ss_pred cCcEEEEeCCCceEecCCCC-cccC--------------ChH----------HeEEecCCHHHHHHHHHHCCCEEEEEeC
Confidence 45679999999999754210 0000 010 13345699999999996 5799999999
Q ss_pred CcHH------------HHHHHHHHhcC
Q 000897 998 GNKL------------YATEMAKVLDP 1012 (1234)
Q Consensus 998 Gtk~------------YAd~VLdiLDP 1012 (1234)
+... ++..+++.++-
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~~gl 93 (166)
T TIGR01664 67 QSGIGRGKLSAESFKNKIEAFLEKLKV 93 (166)
T ss_pred CcccccCcccHHHHHHHHHHHHHHcCC
Confidence 8763 45666666654
No 44
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.86 E-value=0.021 Score=64.58 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=58.7
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEE-ecCCHHHHHHHhhcCc-e
Q 000897 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTK-LRPGIWTFLERASKLF-E 991 (1234)
Q Consensus 914 kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVk-lRPGLdEFLeeLSk~Y-E 991 (1234)
.+.-..+-++|+|||+|||.... + +. .-|.+.+.|.++.+.+ -
T Consensus 116 ~~~~~~phVIVfDlD~TLItd~~-----~------------------------------v~Ir~~~v~~sL~~Lk~~g~v 160 (297)
T PF05152_consen 116 SLVWEPPHVIVFDLDSTLITDEG-----D------------------------------VRIRDPAVYDSLRELKEQGCV 160 (297)
T ss_pred hccCCCCcEEEEECCCcccccCC-----c------------------------------cccCChHHHHHHHHHHHcCCE
Confidence 34557788999999999997642 0 11 2377888999999876 8
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 000897 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1234)
Q Consensus 992 IVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRD 1025 (1234)
+++|+.|.++|+..-++.+.-.+ +|.- |+++.
T Consensus 161 LvLWSyG~~eHV~~sl~~~~L~~-~Fd~-ii~~G 192 (297)
T PF05152_consen 161 LVLWSYGNREHVRHSLKELKLEG-YFDI-IICGG 192 (297)
T ss_pred EEEecCCCHHHHHHHHHHhCCcc-ccEE-EEeCC
Confidence 99999999999999999998765 6764 67654
No 45
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.80 E-value=0.0094 Score=66.99 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEcC
Q 000897 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 997 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFTA 997 (1234)
.+++||||||+||....... . + + .-+. +....|++.++|++|.+ .+.+.|.|+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e---~--g-------------~--~~i~------~~~~~~~~~e~L~~L~~~Gi~lai~S~ 55 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGE---D--G-------------I--DNLN------LSPLHKTLQEKIKTLKKQGFLLALASK 55 (320)
T ss_pred CeEEEEEcCCCCCCCCEEcc---C--C-------------c--cccc------cCccHHHHHHHHHHHHhCCCEEEEEcC
Confidence 47899999999999754210 0 0 0 0000 12247899999999975 589999999
Q ss_pred CcHHHHHHHHHH----hcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCC
Q 000897 998 GNKLYATEMAKV----LDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1061 (1234)
Q Consensus 998 Gtk~YAd~VLdi----LDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~ 1061 (1234)
....+|..+++. +... .+|..-... + ++ .. ..++-+..-+|.. ..+|+|||++.
T Consensus 56 n~~~~a~~~l~~~~~~~~~~-~~f~~~~~~----~---~p-k~-~~i~~~~~~l~i~~~~~vfidD~~~ 114 (320)
T TIGR01686 56 NDEDDAKKVFERRKDFILQA-EDFDARSIN----W---GP-KS-ESLRKIAKKLNLGTDSFLFIDDNPA 114 (320)
T ss_pred CCHHHHHHHHHhCccccCcH-HHeeEEEEe----c---Cc-hH-HHHHHHHHHhCCCcCcEEEECCCHH
Confidence 999999999986 4332 245431111 1 10 00 1122222234554 78999999985
No 46
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=95.74 E-value=0.016 Score=63.71 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=57.9
Q ss_pred hcCCCeEEEEeCCCceeecccCC--C---CCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-C
Q 000897 916 FSARKLCLVLDLDHTLLNSAKFH--E---VDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-L 989 (1234)
Q Consensus 916 Ls~KKLTLVLDLDETLIHSs~~~--e---lDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~ 989 (1234)
-.++++.++|||||||+.++..- . .++..-.++. ..+....+. ....-.....|++.+||+++.+ -
T Consensus 59 ~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~-------g~~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~G 130 (237)
T TIGR01672 59 EGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLK-------NQVFWEKVN-NGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhc-------ChHHHHHHH-HhcccCCcchhHHHHHHHHHHHCC
Confidence 34566799999999999997420 0 0000000000 000000000 0011223344459999999976 5
Q ss_pred ceEEEEcCC----cHHHHHHHHHHhcCCCceeeeeeeecC
Q 000897 990 FEMHLYTMG----NKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1234)
Q Consensus 990 YEIVIFTAG----tk~YAd~VLdiLDP~g~LFs~RIySRD 1025 (1234)
+.|+|.|+. ...+++.+++.+.-.. +|. -++..+
T Consensus 131 ~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f~-~i~~~d 168 (237)
T TIGR01672 131 DAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MNP-VIFAGD 168 (237)
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHhCCch-hee-EEECCC
Confidence 899999998 6779999998877654 564 356543
No 47
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.01 Score=68.93 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=63.7
Q ss_pred hhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEe-----------cccCCCccEEEeCCCCCHHHHHHHhcCCcE
Q 000897 1141 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCT-----------KHIDDQVTHVVANSLGTDKVNWALSTGRFV 1209 (1234)
Q Consensus 1141 ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVs-----------sdId~kVTHLVAt~~gT~KVr~Akk~GIkI 1209 (1234)
..+|+|.++++|.-+|. ..|.=+|.++||.|. .+++..|||-||.++- ..-+-.|...
T Consensus 348 ~slFS~f~FyisreVp~-------dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~----~~~kvegrtY 416 (591)
T COG5163 348 KSLFSGFKFYISREVPG-------DSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPV----MKNKVEGRTY 416 (591)
T ss_pred hhhhhceEEEEeccccc-------hHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchh----hhhhhcceee
Confidence 35899999999998775 345566899999874 4567789999998863 1112258899
Q ss_pred EcHHHHHHHHHhccCCCCCCCCC
Q 000897 1210 VHPGWVEASALLYRRANEQDFAI 1232 (1234)
Q Consensus 1210 VSPdWLedClk~wkRVDEsdYlL 1232 (1234)
|.|+||++|+..++++.-..|..
T Consensus 417 iQPQw~fDsiNkG~l~~~~~Y~~ 439 (591)
T COG5163 417 IQPQWLFDSINKGKLACVENYCV 439 (591)
T ss_pred echHHHHhhhccccchhhhhccc
Confidence 99999999999999999888864
No 48
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=95.63 E-value=0.033 Score=57.20 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=38.0
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcC-ceEEEEcCC
Q 000897 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 998 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~-YEIVIFTAG 998 (1234)
.+.|+||+|+||+-... .. .+. .. .+...||+.++|++|.+. |.+.|.|++
T Consensus 3 ~~~~~~d~~~t~~~~~~-----~~-~~~---------------------~~-~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~ 54 (181)
T PRK08942 3 MKAIFLDRDGVINVDSD-----GY-VKS---------------------PD-EWIPIPGSIEAIARLKQAGYRVVVATNQ 54 (181)
T ss_pred ccEEEEECCCCcccCCc-----cc-cCC---------------------HH-HeEECCCHHHHHHHHHHCCCEEEEEeCC
Confidence 46799999999875431 10 000 00 245789999999999875 999999998
Q ss_pred cH
Q 000897 999 NK 1000 (1234)
Q Consensus 999 tk 1000 (1234)
..
T Consensus 55 ~~ 56 (181)
T PRK08942 55 SG 56 (181)
T ss_pred cc
Confidence 73
No 49
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.62 E-value=0.031 Score=62.55 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=56.9
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhh-hhhhccccccCCCc-ceeeeeccceEEEEecCCHHHHHHHhhc-CceE
Q 000897 916 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDE-ILRKKEEQDREKPH-RHLFRFPHMGMWTKLRPGIWTFLERASK-LFEM 992 (1234)
Q Consensus 916 Ls~KKLTLVLDLDETLIHSs~~~elDP~~~E-il~~kEe~D~~~P~-~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEI 992 (1234)
...+++.+|||||||++..+. .... +.. ..++ ...+.--...--...-||+.+||+.+.+ .+.|
T Consensus 71 ~~~kp~AVV~DIDeTvLdns~------y~~~~~~~-------~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v 137 (266)
T TIGR01533 71 VKDKKYAIVLDLDETVLDNSP------YQGYQVLN-------NKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKI 137 (266)
T ss_pred cCCCCCEEEEeCccccccChH------HHHHHhcC-------CCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeE
Confidence 367899999999999998752 1100 000 0000 0000000001124467999999999965 5899
Q ss_pred EEEcCCcHHHHHHHHHHhcCCCc--eeeeeeeecC
Q 000897 993 HLYTMGNKLYATEMAKVLDPKGV--LFAGRVISRG 1025 (1234)
Q Consensus 993 VIFTAGtk~YAd~VLdiLDP~g~--LFs~RIySRD 1025 (1234)
+|.|+....+.+..++.|.-.|. .+...|+.|+
T Consensus 138 ~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 138 FYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred EEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC
Confidence 99999988777766666654442 1223466554
No 50
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=95.51 E-value=0.052 Score=54.28 Aligned_cols=65 Identities=18% Similarity=0.094 Sum_probs=46.0
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhh-cCceEEEEcCCc
Q 000897 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMGN 999 (1234)
Q Consensus 921 LTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLS-k~YEIVIFTAGt 999 (1234)
.+|+||+|+||+...... ....+ --+...||+.++|+.|. +.|.++|.|++.
T Consensus 1 ~~~~~d~dgtl~~~~~~~----~~~~~-----------------------~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD----YPRSL-----------------------DDWQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred CeEEEeCCCceeccCCcc----cCCCH-----------------------HHeEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 378999999999875210 00000 01357899999999996 569999999987
Q ss_pred H---------------HHHHHHHHHhcC
Q 000897 1000 K---------------LYATEMAKVLDP 1012 (1234)
Q Consensus 1000 k---------------~YAd~VLdiLDP 1012 (1234)
+ .++..+++.++-
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l 81 (147)
T TIGR01656 54 GIGRGYFSAEAFRAPNGRVLELLRQLGV 81 (147)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 566667776654
No 51
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=94.96 E-value=0.067 Score=54.93 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.2
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcH
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNK 1000 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk 1000 (1234)
+.+-||+.++|++|.+ .|.++|.|+...
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 3467999999999985 599999999985
No 52
>COG4996 Predicted phosphatase [General function prediction only]
Probab=94.89 E-value=0.09 Score=54.26 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=76.9
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeec-cceEEEEecCCHHHHHHHhhc-CceEEEEcCCc
Q 000897 922 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFP-HMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 999 (1234)
Q Consensus 922 TLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~-~~~~yVklRPGLdEFLeeLSk-~YEIVIFTAGt 999 (1234)
.+|||+|+||..-...+.+.|-...+ ..-.+. ..+.-|.+||++.+||+++.. -|-+-.+|=..
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rV--------------s~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~ 67 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRV--------------SSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF 67 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceec--------------CccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc
Confidence 47999999998544333333311000 001111 246779999999999999975 68888999999
Q ss_pred HHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCcccc-------CC---CCeEEEEeCCCCccc
Q 000897 1000 KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-------GM---ESAVVIIDDSVRVWP 1064 (1234)
Q Consensus 1000 k~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVL-------Gr---ds~VVIVDDsp~VW~ 1064 (1234)
..-|-++++.||-.. ||.+-++- - +. +++ +=|..++ +. ++++|.+||+.-.+.
T Consensus 68 ~~kA~~aLral~~~~-yFhy~Vie-P-hP--~K~-------~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~ 130 (164)
T COG4996 68 EDKAIKALRALDLLQ-YFHYIVIE-P-HP--YKF-------LMLSQLLREINTERNQKIKPSEIVYLDDRRIHFG 130 (164)
T ss_pred hHHHHHHHHHhchhh-hEEEEEec-C-CC--hhH-------HHHHHHHHHHHHhhccccCcceEEEEecccccHH
Confidence 999999999999986 88875552 2 21 111 1122222 11 268999999986654
No 53
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=94.63 E-value=0.049 Score=57.41 Aligned_cols=121 Identities=19% Similarity=0.204 Sum_probs=62.3
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEc-C
Q 000897 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT-M 997 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFT-A 997 (1234)
...+|+|||.||-.......+.|-. . .. ... .-.....+.-|.+-|++...|++|.. ...|.+-+ .
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf----~--~~----~~~--~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt 70 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPF----K--KI----SNG--NVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRT 70 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-E----E--E-----TTS----EEETT--EE---TTHHHHHHHHHHCT--EEEEE--
T ss_pred CcEEEEcCcCCCCchhHhhccCCCc----e--ec----CCC--CEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECC
Confidence 3569999999998665322222100 0 00 000 01112345678999999999999985 78888888 5
Q ss_pred CcHHHHHHHHHHhcCC---------CceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCC
Q 000897 998 GNKLYATEMAKVLDPK---------GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1061 (1234)
Q Consensus 998 Gtk~YAd~VLdiLDP~---------g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~ 1061 (1234)
..+.+|.++|+.|+-. ..+|.+--+... + ...+.+.|.+-.|-+ +.++++||...
T Consensus 71 ~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-s--------K~~Hf~~i~~~tgI~y~eMlFFDDe~~ 135 (169)
T PF12689_consen 71 DEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-S--------KTTHFRRIHRKTGIPYEEMLFFDDESR 135 (169)
T ss_dssp S-HHHHHHHHHHTT-C----------CCECEEEESSS----------HHHHHHHHHHHH---GGGEEEEES-HH
T ss_pred CChHHHHHHHHhcCCCccccccccchhhcchhheecC-c--------hHHHHHHHHHhcCCChhHEEEecCchh
Confidence 7889999999998765 124544222222 1 012445555445666 78999999864
No 54
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=93.98 E-value=0.095 Score=57.76 Aligned_cols=96 Identities=9% Similarity=0.074 Sum_probs=56.8
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceee----ee-----ccceEEEEecCCHHHHHHHh-
Q 000897 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLF----RF-----PHMGMWTKLRPGIWTFLERA- 986 (1234)
Q Consensus 917 s~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF----~~-----~~~~~yVklRPGLdEFLeeL- 986 (1234)
.++++.+++|+|||+++++...-. +. ..+. +....| .+ .....+....||+.+||+++
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~~~-~~--~~f~---------~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~ 127 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGFWR-GK--KTFS---------PGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHV 127 (237)
T ss_pred CCCCcEEEEECcCccccCCchhee-ee--eccC---------CCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHH
Confidence 345779999999999986521100 00 0000 000001 00 11233456667799999999
Q ss_pred hcCceEEEEcC----CcHHHHHHHHHHhcC-CCceeeeeeeecC
Q 000897 987 SKLFEMHLYTM----GNKLYATEMAKVLDP-KGVLFAGRVISRG 1025 (1234)
Q Consensus 987 Sk~YEIVIFTA----Gtk~YAd~VLdiLDP-~g~LFs~RIySRD 1025 (1234)
.+-++|++-|+ ....+++.+++.+.- ...+|. -++..+
T Consensus 128 ~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~-vil~gd 170 (237)
T PRK11009 128 KRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP-VIFAGD 170 (237)
T ss_pred HCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee-EEEcCC
Confidence 66799999999 457788888886553 233564 355443
No 55
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=93.11 E-value=0.11 Score=50.29 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=60.7
Q ss_pred EEEEecCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCC
Q 000897 971 MWTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 1049 (1234)
Q Consensus 971 ~yVklRPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGr 1049 (1234)
......|++.+||+.+. +.|.++|+|++...++..+++.+.-. .+|.. +++.++... .+.+ ...+.+=+. -+|.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~-i~~~~~~~~-~Kp~-~~~~~~~~~-~~~~ 148 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDE-IISSDDVGS-RKPD-PDAYRRALE-KLGI 148 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSE-EEEGGGSSS-STTS-HHHHHHHHH-HHTS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccccc-ccccchhhh-hhhH-HHHHHHHHH-HcCC
Confidence 45889999999999999 89999999999999999999988655 46764 665554321 1110 001222222 2355
Q ss_pred C-CeEEEEeCCCC
Q 000897 1050 E-SAVVIIDDSVR 1061 (1234)
Q Consensus 1050 d-s~VVIVDDsp~ 1061 (1234)
. ..+|.|||++.
T Consensus 149 ~p~~~~~vgD~~~ 161 (176)
T PF13419_consen 149 PPEEILFVGDSPS 161 (176)
T ss_dssp SGGGEEEEESSHH
T ss_pred CcceEEEEeCCHH
Confidence 5 78999999973
No 56
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=93.10 E-value=0.096 Score=54.44 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=60.0
Q ss_pred EEEecCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 972 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
++.+.||+.+||++|.+. +.++|.|++...++..+++.++-.. +|.. +++.++... .++. +..+.+-++ .+|-.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~ 166 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDA-VITSEEEGV-EKPH-PKIFYAALK-RLGVK 166 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccE-EEEeccCCC-CCCC-HHHHHHHHH-HcCCC
Confidence 468999999999999875 9999999999999999999887654 7765 665544321 1111 112333343 45655
Q ss_pred -CeEEEEeCCC
Q 000897 1051 -SAVVIIDDSV 1060 (1234)
Q Consensus 1051 -s~VVIVDDsp 1060 (1234)
+.+|+|+|++
T Consensus 167 ~~~~~~igDs~ 177 (221)
T TIGR02253 167 PEEAVMVGDRL 177 (221)
T ss_pred hhhEEEECCCh
Confidence 7899999997
No 57
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=92.90 E-value=0.028 Score=69.14 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=76.1
Q ss_pred hHHHHHHHHhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEc
Q 000897 1132 VRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVH 1211 (1234)
Q Consensus 1132 VR~ILkeiQ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVS 1211 (1234)
++..-.+++..+|.||.++|-|| + ..+...+....+.-||.|.. =+..|||||.....+.-.-.+.+....+|.
T Consensus 199 ~~~f~d~hrl~~feg~~~~f~gF-~----~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk 272 (850)
T KOG3524|consen 199 EPCFVDKHRLGVFEGLSLFFHGF-K----QEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVK 272 (850)
T ss_pred ccchhhhhccccccCCeEeecCC-c----HHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeec
Confidence 45566778899999999999996 2 23445677788999999998 677999999987654433345666778999
Q ss_pred HHHHHHHHHhccCCCCCCCCC
Q 000897 1212 PGWVEASALLYRRANEQDFAI 1232 (1234)
Q Consensus 1212 PdWLedClk~wkRVDEsdYlL 1232 (1234)
-+|.|-++....+.-|..|++
T Consensus 273 ~ewfw~siq~g~~a~e~~yl~ 293 (850)
T KOG3524|consen 273 KEWFWVSIQRGCCAIEDNYLL 293 (850)
T ss_pred ccceEEEEecchhccccceec
Confidence 999999999888999999875
No 58
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=92.89 E-value=0.38 Score=56.03 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=40.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEcC
Q 000897 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 997 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFTA 997 (1234)
+|.+|+||-|+||+..... . +.. ..-..+.+.||+.+||++|.+ .|.++|.|+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~----~----y~~------------------~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTN 54 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPT----D----FQV------------------DSLDKLAFEPGVIPALLKLQKAGYKLVMVTN 54 (354)
T ss_pred CCcEEEEeCCCCccCCCCc----c----ccc------------------cCcccceECcCHHHHHHHHHhCCCeEEEEEC
Confidence 4789999999999986420 0 000 011247899999999999976 599999999
Q ss_pred C
Q 000897 998 G 998 (1234)
Q Consensus 998 G 998 (1234)
.
T Consensus 55 q 55 (354)
T PRK05446 55 Q 55 (354)
T ss_pred C
Confidence 4
No 59
>PRK08238 hypothetical protein; Validated
Probab=92.65 E-value=0.16 Score=61.12 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=39.4
Q ss_pred EEecCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 000897 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1234)
Q Consensus 973 VklRPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRD 1025 (1234)
..++|++.++|+++. +.+.++|-|++.+.|++.+++.+. +|. .++..+
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lG----lFd-~Vigsd 119 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLG----LFD-GVFASD 119 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC----CCC-EEEeCC
Confidence 357899999999986 569999999999999999999885 355 366544
No 60
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=91.94 E-value=0.38 Score=48.69 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=37.5
Q ss_pred EecCCHHHHHHHh-hcCceEEEEcCCcHHHHH------------HHHHHhcCCCceeeeeeeec
Q 000897 974 KLRPGIWTFLERA-SKLFEMHLYTMGNKLYAT------------EMAKVLDPKGVLFAGRVISR 1024 (1234)
Q Consensus 974 klRPGLdEFLeeL-Sk~YEIVIFTAGtk~YAd------------~VLdiLDP~g~LFs~RIySR 1024 (1234)
...+.+.+.|+++ .+.++|++.|+-...+.. .++++|+-.+.-| +.|+-|
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY-d~l~~~ 86 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY-DEIYVG 86 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC-ceEEeC
Confidence 3677888889888 568999999998888876 7788888776434 335444
No 61
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=91.49 E-value=0.45 Score=58.05 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=66.6
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEc
Q 000897 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT 996 (1234)
Q Consensus 918 ~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFT 996 (1234)
.+.+++.||||+|||.+.....+ +. .+. =|..+-||+.+.|++|.+ .|.|+|+|
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~-~~--------------~~~----------d~~~l~pgV~e~L~~L~~~Gy~IvIvT 220 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVF-PK--------------GPD----------DWQIIFPEIPEKLKELEADGFKICIFT 220 (526)
T ss_pred ccCcEEEEECCCCccccCCCccC-CC--------------CHH----------HeeecccCHHHHHHHHHHCCCEEEEEE
Confidence 56789999999999976421000 00 000 033356999999999976 59999999
Q ss_pred CCcH------------HHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCC-CCC-CccccCccccCCC-CeEEEEeCCC
Q 000897 997 MGNK------------LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGD-ERV-PKSKDLEGVLGME-SAVVIIDDSV 1060 (1234)
Q Consensus 997 AGtk------------~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~-Er~-~~iKDLsrVLGrd-s~VVIVDDsp 1060 (1234)
+... .++..|++.|+- .|. -+++.++|. +.++. +.. ...+++..-++-+ +..++|-|..
T Consensus 221 NQ~gI~~G~~~~~~~~~ki~~iL~~lgi---pfd-viia~~~~~-~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 221 NQGGIARGKINADDFKAKIEAIVAKLGV---PFQ-VFIAIGAGF-YRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred CCcccccCcccHHHHHHHHHHHHHHcCC---ceE-EEEeCCCCC-CCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 9766 467778877763 354 355444332 22211 000 0112221111234 6799999987
No 62
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=91.13 E-value=0.27 Score=50.91 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=34.2
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEcCC
Q 000897 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 998 (1234)
Q Consensus 921 LTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFTAG 998 (1234)
+++.+|||+|||.+...... . + .+.. |..+-|++.+-|+++.+ -|.|+|+|+-
T Consensus 1 Kia~fD~DgTLi~~~s~~~f--------~----~---~~~D----------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKF--------P----K---DPDD----------WKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-------------S---STCG----------GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcC--------c----C---CHHH----------hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 46899999999998532110 0 0 0111 45577899999999875 7999999985
No 63
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=90.69 E-value=0.33 Score=50.30 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=60.0
Q ss_pred EEEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCcccc-CCC
Q 000897 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVL-Grd 1050 (1234)
.+.++||+.++|+++.+.|.++|-|++...++..+++.+.=.+ +|.. +++.+++. ..+++ +..+.+-+. .+ |..
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~-~~KP~-~~~~~~~~~-~~~~~~ 169 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDD-IFVSEDAG-IQKPD-KEIFNYALE-RMPKFS 169 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCE-EEEcCccC-CCCCC-HHHHHHHHH-HhcCCC
Confidence 3689999999999998889999999999999999998876544 6764 66554432 12221 112333344 35 654
Q ss_pred -CeEEEEeCCC
Q 000897 1051 -SAVVIIDDSV 1060 (1234)
Q Consensus 1051 -s~VVIVDDsp 1060 (1234)
..+|+|+|++
T Consensus 170 ~~~~v~igD~~ 180 (224)
T TIGR02254 170 KEEVLMIGDSL 180 (224)
T ss_pred chheEEECCCc
Confidence 7899999986
No 64
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=90.66 E-value=0.33 Score=50.11 Aligned_cols=98 Identities=17% Similarity=0.090 Sum_probs=64.7
Q ss_pred EEEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
.+.++||+.++|+.+.+ .|.++|.|++.+.++..+++.++=.+ +|.. +++.++.. ..++ .+..+.+-+. .+|..
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~Kp-~p~~~~~~~~-~~~~~ 157 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSV-LIGGDSLA-QRKP-HPDPLLLAAE-RLGVA 157 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcE-EEecCCCC-CCCC-ChHHHHHHHH-HcCCC
Confidence 46789999999999975 59999999999999999999887554 6653 66554321 1111 0112233333 34555
Q ss_pred -CeEEEEeCCCCccccCcCCccccc
Q 000897 1051 -SAVVIIDDSVRVWPHNKLNLIVVE 1074 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW~~qpdNgI~Ik 1074 (1234)
+.+++|+|+..-...-...|+.+-
T Consensus 158 ~~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 158 PQQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred hhHeEEeCCCHHHHHHHHHCCCeEE
Confidence 779999999755533334455443
No 65
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=90.22 E-value=0.37 Score=48.11 Aligned_cols=83 Identities=27% Similarity=0.261 Sum_probs=53.8
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.+.||+.+||+.+.+ .|.++|+|++...+ ..++..++-.. +|.. ++..++... .+++ +..+.+=++ .+|..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~~ 157 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDV-VIFSGDVGR-GKPD-PDIYLLALK-KLGLKP 157 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCE-EEEcCCCCC-CCCC-HHHHHHHHH-HcCCCc
Confidence 6789999999999976 69999999999999 66665555543 5765 443333221 1110 111222222 34655
Q ss_pred CeEEEEeCCCC
Q 000897 1051 SAVVIIDDSVR 1061 (1234)
Q Consensus 1051 s~VVIVDDsp~ 1061 (1234)
+.+|+|||++.
T Consensus 158 ~~~~~vgD~~~ 168 (183)
T TIGR01509 158 EECLFVDDSPA 168 (183)
T ss_pred ceEEEEcCCHH
Confidence 78999999974
No 66
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=90.04 E-value=0.6 Score=48.24 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcC-ceEEEEc
Q 000897 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 996 (1234)
Q Consensus 918 ~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~-YEIVIFT 996 (1234)
..-..||+|+|+||..... ...-|++.++|++|.+. +.++|.|
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~------------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~S 66 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH------------------------------------NEAYPALRDWIEELKAAGRKLLIVS 66 (170)
T ss_pred CCCCEEEEecCCccccCCC------------------------------------CCcChhHHHHHHHHHHcCCEEEEEe
Confidence 4557899999999985421 12458999999999865 9999999
Q ss_pred CCc-HHHHHHHHHHhc
Q 000897 997 MGN-KLYATEMAKVLD 1011 (1234)
Q Consensus 997 AGt-k~YAd~VLdiLD 1011 (1234)
++. ..++..+++.++
T Consensus 67 n~~~~~~~~~~~~~~g 82 (170)
T TIGR01668 67 NNAGEQRAKAVEKALG 82 (170)
T ss_pred CCchHHHHHHHHHHcC
Confidence 999 677777777665
No 67
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=89.89 E-value=0.42 Score=51.87 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=66.0
Q ss_pred EEEecCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
.+.+.||+.++|++|. +.|.+.|-|++.+.++..+++.++-.. +|.. +++.+++.. .+++ +..+.+=+. .+|..
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-iv~~~~~~~-~KP~-p~~~~~a~~-~~~~~ 180 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQA-VIIGSECEH-AKPH-PDPYLKALE-VLKVS 180 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcE-EEecCcCCC-CCCC-hHHHHHHHH-HhCCC
Confidence 3667899999999995 569999999999999999999987654 7765 665554432 1221 112334444 34555
Q ss_pred -CeEEEEeCCCCccccCcCCcccc
Q 000897 1051 -SAVVIIDDSVRVWPHNKLNLIVV 1073 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW~~qpdNgI~I 1073 (1234)
..+|+|+|++.-...-...++.+
T Consensus 181 ~~~~l~vgDs~~Di~aA~~aGi~~ 204 (248)
T PLN02770 181 KDHTFVFEDSVSGIKAGVAAGMPV 204 (248)
T ss_pred hhHEEEEcCCHHHHHHHHHCCCEE
Confidence 78999999984333223455543
No 68
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=89.49 E-value=0.65 Score=48.56 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=64.1
Q ss_pred EEEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
.+.+.||+.++|+.|.+ .+.++|.|++.+.++..+++.++=.. +|.. +++.+++.. .+. .+..+.+-+. -++..
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~-i~~~~~~~~-~Kp-~p~~~~~~~~-~~~~~ 154 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDV-VITLDDVEH-AKP-DPEPVLKALE-LLGAK 154 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeE-EEecCcCCC-CCC-CcHHHHHHHH-HcCCC
Confidence 36788999999999975 69999999999999999999987654 7865 666554321 111 0112223232 24544
Q ss_pred -CeEEEEeCCCCccccCcCCccc
Q 000897 1051 -SAVVIIDDSVRVWPHNKLNLIV 1072 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW~~qpdNgI~ 1072 (1234)
+.+|+|+|++.-...-...|+.
T Consensus 155 ~~~~~~iGDs~~Di~aa~~aG~~ 177 (214)
T PRK13288 155 PEEALMVGDNHHDILAGKNAGTK 177 (214)
T ss_pred HHHEEEECCCHHHHHHHHHCCCe
Confidence 7899999997544332344543
No 69
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=89.35 E-value=0.43 Score=49.19 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=57.6
Q ss_pred EEecCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+...||+.++|+++.+. |.++|.|++...++..+++.+.=. .+|.. +++.++.. ..+.. +..|.+=++ .+|..
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~p 165 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFDA-VLSADAVR-AYKPA-PQVYQLALE-ALGVPP 165 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhhe-eEehhhcC-CCCCC-HHHHHHHHH-HhCCCh
Confidence 56789999999999986 999999999999999999887533 36764 66544332 11211 111222222 34655
Q ss_pred CeEEEEeCCCC
Q 000897 1051 SAVVIIDDSVR 1061 (1234)
Q Consensus 1051 s~VVIVDDsp~ 1061 (1234)
+.+|+|+|++.
T Consensus 166 ~~~~~vgD~~~ 176 (198)
T TIGR01428 166 DEVLFVASNPW 176 (198)
T ss_pred hhEEEEeCCHH
Confidence 78999999973
No 70
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=89.34 E-value=0.61 Score=48.45 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred EEEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
.+.+.||+.++|++|.+ .|.++|.|++.+.++..+++.++-.+ +|.. +++.+++. ..++. ...+.+=+. .+|.+
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~-~~KP~-~~~~~~~~~-~~~~~ 147 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDH-VIGSDEVP-RPKPA-PDIVREALR-LLDVP 147 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heee-EEecCcCC-CCCCC-hHHHHHHHH-HcCCC
Confidence 36788999999999975 69999999999999999999887765 6764 66555432 11111 111222222 34555
Q ss_pred -CeEEEEeCCCCccccCcCCcccc
Q 000897 1051 -SAVVIIDDSVRVWPHNKLNLIVV 1073 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW~~qpdNgI~I 1073 (1234)
+.+|+|+|+..-...-...|+.+
T Consensus 148 ~~~~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 148 PEDAVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred hhheEEEcCCHHHHHHHHHcCCeE
Confidence 78999999975443333456554
No 71
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=88.94 E-value=0.46 Score=52.62 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=64.7
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.+.||+.++|++|.+ .|-++|.|++.+.|+..+++.++-.. +|.. +++.+++.. .++. +..+.+=+. .+|..
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-ii~~~d~~~-~KP~-Pe~~~~a~~-~l~~~p 182 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSV-VLAAEDVYR-GKPD-PEMFMYAAE-RLGFIP 182 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcE-EEecccCCC-CCCC-HHHHHHHHH-HhCCCh
Confidence 5679999999999985 59999999999999999999886544 6765 665554421 1221 112334444 35665
Q ss_pred CeEEEEeCCCCccccCcCCccc
Q 000897 1051 SAVVIIDDSVRVWPHNKLNLIV 1072 (1234)
Q Consensus 1051 s~VVIVDDsp~VW~~qpdNgI~ 1072 (1234)
..+|+|+|+..-...-...|+.
T Consensus 183 ~~~l~IgDs~~Di~aA~~aG~~ 204 (260)
T PLN03243 183 ERCIVFGNSNSSVEAAHDGCMK 204 (260)
T ss_pred HHeEEEcCCHHHHHHHHHcCCE
Confidence 7899999997544332334443
No 72
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=88.82 E-value=0.7 Score=48.10 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=58.5
Q ss_pred EEEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
.+..+||+.+||+.+.+ .+.++|.|++...++..+++.++-.. +|. .+++.+++. ..++ .+..+.+=+. .++..
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~-~~kp-~~~~~~~~~~-~~~~~ 165 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFS-VVIGGDSLP-NKKP-DPAPLLLACE-KLGLD 165 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Ccc-EEEcCCCCC-CCCc-ChHHHHHHHH-HcCCC
Confidence 36799999999999985 59999999999999999999887543 565 366544321 1111 0001122222 34555
Q ss_pred -CeEEEEeCCCCcc
Q 000897 1051 -SAVVIIDDSVRVW 1063 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW 1063 (1234)
+.+|+|+|+..-.
T Consensus 166 ~~~~i~igD~~~Di 179 (226)
T PRK13222 166 PEEMLFVGDSRNDI 179 (226)
T ss_pred hhheEEECCCHHHH
Confidence 7899999997443
No 73
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=88.62 E-value=0.36 Score=49.29 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=55.9
Q ss_pred EEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCC---CCCCCCCCccccCccccCC
Q 000897 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDP---FDGDERVPKSKDLEGVLGM 1049 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~---~dG~Er~~~iKDLsrVLGr 1049 (1234)
++..||+.++|++|. +.++|.|++.+.++..+++.++-.. +|.. +++.++.... .++ .+..+.+-+. .+|.
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~-i~~~~~~~~~~~~~KP-~p~~~~~~~~-~~~~ 156 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDG-IFCFDTANPDYLLPKP-SPQAYEKALR-EAGV 156 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCe-EEEeecccCccCCCCC-CHHHHHHHHH-HhCC
Confidence 457799999999998 6899999999999999999886543 7765 6654432110 111 1112223333 3465
Q ss_pred C-CeEEEEeCCCC
Q 000897 1050 E-SAVVIIDDSVR 1061 (1234)
Q Consensus 1050 d-s~VVIVDDsp~ 1061 (1234)
+ +.+++|+|++.
T Consensus 157 ~~~~~l~vgD~~~ 169 (184)
T TIGR01993 157 DPERAIFFDDSAR 169 (184)
T ss_pred CccceEEEeCCHH
Confidence 5 78999999863
No 74
>PRK06769 hypothetical protein; Validated
Probab=88.44 E-value=0.96 Score=46.90 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=23.5
Q ss_pred EecCCHHHHHHHhhc-CceEEEEcCCcH
Q 000897 974 KLRPGIWTFLERASK-LFEMHLYTMGNK 1000 (1234)
Q Consensus 974 klRPGLdEFLeeLSk-~YEIVIFTAGtk 1000 (1234)
.+-||+.++|++|.+ .|.++|.|+...
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 467999999999975 699999999875
No 75
>PRK09449 dUMP phosphatase; Provisional
Probab=87.97 E-value=0.65 Score=48.68 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=58.9
Q ss_pred EEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCC-C-
Q 000897 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGr-d- 1050 (1234)
+...||+.++|+.|.+.|.+.|.|++.+.++..+++.+.-.+ +|.. ++..+++.. .+++ +..+.+-+. -+|. +
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~~-~KP~-p~~~~~~~~-~~~~~~~ 168 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDL-LVISEQVGV-AKPD-VAIFDYALE-QMGNPDR 168 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCE-EEEECccCC-CCCC-HHHHHHHHH-HcCCCCc
Confidence 568999999999999889999999999999999998876544 6764 665554321 2221 112333444 3453 3
Q ss_pred CeEEEEeCCC
Q 000897 1051 SAVVIIDDSV 1060 (1234)
Q Consensus 1051 s~VVIVDDsp 1060 (1234)
+.+|+|+|++
T Consensus 169 ~~~~~vgD~~ 178 (224)
T PRK09449 169 SRVLMVGDNL 178 (224)
T ss_pred ccEEEEcCCc
Confidence 6799999996
No 76
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=87.03 E-value=0.83 Score=49.20 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=64.2
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCC--
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-- 1049 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGr-- 1049 (1234)
+.+.||+.++|++|.+ .+.+.|-|++.+.+++.+++.+.-.+ +|.+.+++.++.. ..++ ++..+.+-+. .+|.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~-~~KP-~p~~~~~a~~-~l~~~~ 173 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVP-AGRP-APWMALKNAI-ELGVYD 173 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCC-CCCC-CHHHHHHHHH-HcCCCC
Confidence 5788999999999975 59999999999999999999887655 4434577665432 1121 1112334444 3454
Q ss_pred CCeEEEEeCCCCccccCcCCccc
Q 000897 1050 ESAVVIIDDSVRVWPHNKLNLIV 1072 (1234)
Q Consensus 1050 ds~VVIVDDsp~VW~~qpdNgI~ 1072 (1234)
...+|+|.|++.-...-...|+.
T Consensus 174 ~~~~l~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 174 VAACVKVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred chheEEECCcHHHHHHHHHCCCe
Confidence 36799999997544332344544
No 77
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=86.88 E-value=1.3 Score=42.73 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=24.3
Q ss_pred CCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHh
Q 000897 977 PGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 1010 (1234)
Q Consensus 977 PGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiL 1010 (1234)
||..+||+.|.+. ..+++.|+.+..=...+++.|
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 8999999999875 999999999844444444333
No 78
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=86.40 E-value=1.5 Score=47.44 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=48.9
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEcC
Q 000897 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 997 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFTA 997 (1234)
+-..+++|+|+||.+... .-||+.++|++|.+ .+.++|.|+
T Consensus 7 ~~~~~~~D~dG~l~~~~~--------------------------------------~~pga~e~L~~L~~~G~~~~ivTN 48 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNH--------------------------------------TYPGAVQNLNKIIAQGKPVYFVSN 48 (242)
T ss_pred cCCEEEEecccccccCCc--------------------------------------cCccHHHHHHHHHHCCCEEEEEeC
Confidence 345789999999986431 35899999999985 689999999
Q ss_pred CcHHHHH--HHHHHhcCCCceeeeeeeec
Q 000897 998 GNKLYAT--EMAKVLDPKGVLFAGRVISR 1024 (1234)
Q Consensus 998 Gtk~YAd--~VLdiLDP~g~LFs~RIySR 1024 (1234)
+.+.++. ..++.+.-...+|.. |++.
T Consensus 49 ~~~~~~~~~~~L~~~gl~~~~~~~-Ii~s 76 (242)
T TIGR01459 49 SPRNIFSLHKTLKSLGINADLPEM-IISS 76 (242)
T ss_pred CCCChHHHHHHHHHCCCCccccce-EEcc
Confidence 9998776 566666654214543 5543
No 79
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.31 E-value=1.4 Score=48.36 Aligned_cols=57 Identities=21% Similarity=0.096 Sum_probs=44.3
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcC-ceEEEEcCC
Q 000897 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 998 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~-YEIVIFTAG 998 (1234)
.+.+++|||+||+.... ...|...+.|+++.+. +.++|.|.-
T Consensus 4 ~kli~~DlDGTLl~~~~-------------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR 46 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-------------------------------------YSYEPAKPALKALKEKGIPVIPCTSK 46 (273)
T ss_pred ceEEEEcCcccCcCCCC-------------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46899999999996431 0234567788888764 899999999
Q ss_pred cHHHHHHHHHHhcCC
Q 000897 999 NKLYATEMAKVLDPK 1013 (1234)
Q Consensus 999 tk~YAd~VLdiLDP~ 1013 (1234)
...++..+++.|+-.
T Consensus 47 ~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 47 TAAEVEVLRKELGLE 61 (273)
T ss_pred CHHHHHHHHHHcCCC
Confidence 999999999988644
No 80
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=86.06 E-value=1.5 Score=44.05 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=40.1
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeee
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1023 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIyS 1023 (1234)
+.++||+.++|+.+.+ .+.++|.|++...+++.+++.++-.. +|.. +++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-i~~ 120 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIE-IYS 120 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeE-Eec
Confidence 6899999999999976 59999999999999999999875433 5543 443
No 81
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=85.90 E-value=0.55 Score=49.26 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=62.0
Q ss_pred EEEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
.+...||+.+||+.+. +.++|.|++.+.+++.+++.++-.. +|...+++.++... .++. +..+.+=+. .+|..
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~-~KP~-p~~~~~a~~-~~~~~p 159 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQR-WKPD-PALMFHAAE-AMNVNV 159 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCC-CCCC-hHHHHHHHH-HcCCCH
Confidence 3567899999999994 8999999999999999998776543 67544665443321 1111 112222233 24555
Q ss_pred CeEEEEeCCCCccccCcCCcccc
Q 000897 1051 SAVVIIDDSVRVWPHNKLNLIVV 1073 (1234)
Q Consensus 1051 s~VVIVDDsp~VW~~qpdNgI~I 1073 (1234)
+.+|+|+|++.-...-..-|+.+
T Consensus 160 ~~~l~igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 160 ENCILVDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred HHeEEEeCcHhhHHHHHHCCCEE
Confidence 78999999986554333445544
No 82
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=85.75 E-value=1.3 Score=45.72 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=27.1
Q ss_pred CCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhc
Q 000897 977 PGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLD 1011 (1234)
Q Consensus 977 PGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLD 1011 (1234)
|...+.|+++. +-+.++|.|.-....+..+++.+.
T Consensus 18 ~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 53 (254)
T PF08282_consen 18 PETIEALKELQEKGIKLVIATGRSYSSIKRLLKELG 53 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcccceEEEEEccCccccccccccccc
Confidence 33456777766 678999999999999988888654
No 83
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=85.54 E-value=1.2 Score=50.28 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=22.7
Q ss_pred hhHHHHhhhcCCCeEEEEeCCCceeecc
Q 000897 908 RLEEQKKMFSARKLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 908 rL~~Q~kLLs~KKLTLVLDLDETLIHSs 935 (1234)
++.++-+..+.+++.+|||||||++..+
T Consensus 67 ~~d~~~k~~k~K~~aVvlDlDETvLdNs 94 (274)
T COG2503 67 ALDTQAKKKKGKKKAVVLDLDETVLDNS 94 (274)
T ss_pred HHHhhhccccCCCceEEEecchHhhcCc
Confidence 4555556677888999999999999876
No 84
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=84.94 E-value=1.5 Score=46.99 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=74.5
Q ss_pred HhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcC-ce
Q 000897 913 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FE 991 (1234)
Q Consensus 913 ~kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~-YE 991 (1234)
..|..++-..+|||||+|||-=.. | ..-|-+++.|.+|.+. -.
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~-----~-------------------------------~~tpe~~~W~~e~k~~gi~ 64 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDN-----P-------------------------------DATPELRAWLAELKEAGIK 64 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccC-----C-------------------------------CCCHHHHHHHHHHHhcCCE
Confidence 356778999999999999995321 1 0335677788888765 88
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCC--CccccCcC
Q 000897 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV--RVWPHNKL 1068 (1234)
Q Consensus 992 IVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp--~VW~~qpd 1068 (1234)
++|.++.++.-+..++..||-+- |+ +- ...+. ..+-|-|. .++.+ +.||+|-|+- ++...|..
T Consensus 65 v~vvSNn~e~RV~~~~~~l~v~f------i~-~A--~KP~~----~~fr~Al~-~m~l~~~~vvmVGDqL~TDVlggnr~ 130 (175)
T COG2179 65 VVVVSNNKESRVARAAEKLGVPF------IY-RA--KKPFG----RAFRRALK-EMNLPPEEVVMVGDQLFTDVLGGNRA 130 (175)
T ss_pred EEEEeCCCHHHHHhhhhhcCCce------ee-cc--cCccH----HHHHHHHH-HcCCChhHEEEEcchhhhhhhccccc
Confidence 99999999999999999888652 22 21 01000 01223333 23445 7899999986 45655432
Q ss_pred --Ccccccccc
Q 000897 1069 --NLIVVERYT 1077 (1234)
Q Consensus 1069 --NgI~IkpY~ 1077 (1234)
..|.|+|-.
T Consensus 131 G~~tIlV~Pl~ 141 (175)
T COG2179 131 GMRTILVEPLV 141 (175)
T ss_pred CcEEEEEEEec
Confidence 345666653
No 85
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=84.55 E-value=2.2 Score=46.17 Aligned_cols=59 Identities=29% Similarity=0.223 Sum_probs=47.6
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHh-hcCceEEEEcC
Q 000897 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERA-SKLFEMHLYTM 997 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeL-Sk~YEIVIFTA 997 (1234)
..+.|++|||+||+.... .++|...+.|+++ .+-+.++|-|.
T Consensus 2 ~~kli~~DlDGTLl~~~~-------------------------------------~i~~~~~~al~~~~~~g~~v~iaTG 44 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK-------------------------------------TISPETKEALARLREKGVKVVLATG 44 (264)
T ss_pred CeeEEEEcCCCCccCCCC-------------------------------------ccCHHHHHHHHHHHHCCCEEEEECC
Confidence 356899999999998642 0456667778876 57899999999
Q ss_pred CcHHHHHHHHHHhcCCC
Q 000897 998 GNKLYATEMAKVLDPKG 1014 (1234)
Q Consensus 998 Gtk~YAd~VLdiLDP~g 1014 (1234)
..-..+..+++.|...+
T Consensus 45 R~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 45 RPLPDVLSILEELGLDG 61 (264)
T ss_pred CChHHHHHHHHHcCCCc
Confidence 99999999999988776
No 86
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=84.13 E-value=1.4 Score=46.03 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=40.9
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeee
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1021 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RI 1021 (1234)
+.++||+.+||+.+.+ .+.++|.|++...++..+++.+.-.. +|..++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~ 132 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRL 132 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEE
Confidence 5789999999999986 59999999999999999999876544 666544
No 87
>PRK11587 putative phosphatase; Provisional
Probab=84.09 E-value=1.6 Score=46.07 Aligned_cols=94 Identities=13% Similarity=0.011 Sum_probs=60.5
Q ss_pred EEEecCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
.+.+.||+.+||+.|. +.+.+.|-|++...++..+++...- . +|. -+++.++... .++ ++..+.+-+. .+|..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~-~~~-~i~~~~~~~~-~KP-~p~~~~~~~~-~~g~~ 154 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-P-APE-VFVTAERVKR-GKP-EPDAYLLGAQ-LLGLA 154 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-C-Ccc-EEEEHHHhcC-CCC-CcHHHHHHHH-HcCCC
Confidence 3678999999999997 5699999999999988877775543 1 343 3565543321 122 1223444444 35655
Q ss_pred -CeEEEEeCCCCccccCcCCcc
Q 000897 1051 -SAVVIIDDSVRVWPHNKLNLI 1071 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW~~qpdNgI 1071 (1234)
+.+|+|+|++.-...-...|+
T Consensus 155 p~~~l~igDs~~di~aA~~aG~ 176 (218)
T PRK11587 155 PQECVVVEDAPAGVLSGLAAGC 176 (218)
T ss_pred cccEEEEecchhhhHHHHHCCC
Confidence 789999999854432223444
No 88
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=83.94 E-value=0.92 Score=48.72 Aligned_cols=95 Identities=17% Similarity=0.022 Sum_probs=62.4
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.+.||+.++|+.+.+ .|.+.|-|++.+.++..+++.+.-. .+|.. +++.++.. ..++ ++..|.+=+. .+|.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-iv~s~~~~-~~KP-~p~~~~~~~~-~~~~~p 166 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHLDL-LLSTHTFG-YPKE-DQRLWQAVAE-HTGLKA 166 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHCCE-EEEeeeCC-CCCC-CHHHHHHHHH-HcCCCh
Confidence 6789999999999986 5899999999999999998876543 36765 55433322 1111 0112333333 35655
Q ss_pred CeEEEEeCCCCccccCcCCccc
Q 000897 1051 SAVVIIDDSVRVWPHNKLNLIV 1072 (1234)
Q Consensus 1051 s~VVIVDDsp~VW~~qpdNgI~ 1072 (1234)
+.+|+|+|++.-...-...|+.
T Consensus 167 ~~~l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 167 ERTLFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred HHEEEEcCCHHHHHHHHHcCCe
Confidence 7899999998544332345553
No 89
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=83.86 E-value=1.9 Score=45.79 Aligned_cols=50 Identities=10% Similarity=0.215 Sum_probs=41.4
Q ss_pred EEEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeee
Q 000897 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1021 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RI 1021 (1234)
.+.+|||+.+||+.+.+ .+.++|.|++...|++.+++.+.+...++.+++
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~ 118 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEA 118 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEecee
Confidence 47899999999999987 599999999999999999998865444454443
No 90
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=83.80 E-value=1.7 Score=46.57 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=59.4
Q ss_pred EEEecCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 972 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
++.+.||+.++|+.|.+. +.+.|.|++...++..+++.++-.. +|. .+++.+++. ..++. +..+.+-++ .+|..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~-~~KP~-p~~~~~~~~-~l~~~ 167 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCA-VLIGGDTLA-ERKPH-PLPLLVAAE-RIGVA 167 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-ccc-EEEecCcCC-CCCCC-HHHHHHHHH-HhCCC
Confidence 467899999999999764 8999999999999999998876543 565 355544332 11211 112333333 35655
Q ss_pred -CeEEEEeCCCCcc
Q 000897 1051 -SAVVIIDDSVRVW 1063 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW 1063 (1234)
+.+|+|+|++.-.
T Consensus 168 p~~~l~IGDs~~Di 181 (229)
T PRK13226 168 PTDCVYVGDDERDI 181 (229)
T ss_pred hhhEEEeCCCHHHH
Confidence 7899999997544
No 91
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=83.62 E-value=1.3 Score=46.61 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=63.6
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.+.||+.++|+.+.+ .|.++|.|++.+.+++.+++.+.=.+ +|.. +++.++.. ..+++ +..+..=+. .+|..
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~Kp~-~~~~~~~~~-~~~~~~ 165 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDA-LASAEKLP-YSKPH-PEVYLNCAA-KLGVDP 165 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccE-EEEcccCC-CCCCC-HHHHHHHHH-HcCCCH
Confidence 5678999999999975 59999999999999999999876554 6764 66655321 11111 112222233 34655
Q ss_pred CeEEEEeCCCCccccCcCCccc
Q 000897 1051 SAVVIIDDSVRVWPHNKLNLIV 1072 (1234)
Q Consensus 1051 s~VVIVDDsp~VW~~qpdNgI~ 1072 (1234)
+.+|+|+|+..-...-...|+.
T Consensus 166 ~~~~~igDs~~Di~aA~~aG~~ 187 (222)
T PRK10826 166 LTCVALEDSFNGMIAAKAARMR 187 (222)
T ss_pred HHeEEEcCChhhHHHHHHcCCE
Confidence 7899999998655433334443
No 92
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=83.42 E-value=1.5 Score=45.58 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=59.2
Q ss_pred EEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-C
Q 000897 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s 1051 (1234)
+...|++.++|+++.+.|.++|.|+|...++...++.+- =..+|.. ++.-++.+ ..+++ +..|..-+. .+|-+ +
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~-v~~s~~~g-~~KP~-~~~f~~~~~-~~g~~p~ 172 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDA-VFISEDVG-VAKPD-PEIFEYALE-KLGVPPE 172 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhhe-EEEecccc-cCCCC-cHHHHHHHH-HcCCCcc
Confidence 678889999999999889999999999999999999775 3347876 55444433 22221 112222333 34554 7
Q ss_pred eEEEEeCCCCc
Q 000897 1052 AVVIIDDSVRV 1062 (1234)
Q Consensus 1052 ~VVIVDDsp~V 1062 (1234)
.++.|||+...
T Consensus 173 ~~l~VgD~~~~ 183 (229)
T COG1011 173 EALFVGDSLEN 183 (229)
T ss_pred eEEEECCChhh
Confidence 89999999743
No 93
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=82.57 E-value=2.1 Score=48.69 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.9
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
+.+++|||+||+++.
T Consensus 1 ~~~ifD~DGvL~~g~ 15 (321)
T TIGR01456 1 FGFAFDIDGVLFRGK 15 (321)
T ss_pred CEEEEeCcCceECCc
Confidence 468999999999875
No 94
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=82.57 E-value=3.1 Score=42.48 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=47.3
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
++++|+. -|++|.+ .+.++|.|+..+..+..+++.+.-.. +|... .. +. ..++.+..-+|..
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~-~~~~~---~~------k~----~~~~~~~~~~~~~~ 92 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH-LYQGQ---SN------KL----IAFSDILEKLALAP 92 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE-EEecc---cc------hH----HHHHHHHHHcCCCH
Confidence 4677765 6777765 69999999999999999998876542 44321 00 00 1222222234555
Q ss_pred CeEEEEeCCCCcc
Q 000897 1051 SAVVIIDDSVRVW 1063 (1234)
Q Consensus 1051 s~VVIVDDsp~VW 1063 (1234)
+.++.|-|+..=.
T Consensus 93 ~~~~~vGDs~~D~ 105 (154)
T TIGR01670 93 ENVAYIGDDLIDW 105 (154)
T ss_pred HHEEEECCCHHHH
Confidence 6799998886433
No 95
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=82.49 E-value=2 Score=47.69 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=60.8
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.++||+.++|+.+.+ .+.++|.|++...++..+++.++-.. +|. .+++.+++. ..+.. . ..++.+-..+|..
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~-~i~~~d~~~-~~Kp~-p-~~~~~~~~~~g~~~ 174 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFR-WIIGGDTLP-QKKPD-P-AALLFVMKMAGVPP 174 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCe-EEEecCCCC-CCCCC-c-HHHHHHHHHhCCCh
Confidence 5679999999999974 69999999999999999999876543 676 466554322 11110 0 0122222234655
Q ss_pred CeEEEEeCCCCccccCcCCcc
Q 000897 1051 SAVVIIDDSVRVWPHNKLNLI 1071 (1234)
Q Consensus 1051 s~VVIVDDsp~VW~~qpdNgI 1071 (1234)
..+|+|+|+..-...-...++
T Consensus 175 ~~~l~IGD~~~Di~aA~~aGi 195 (272)
T PRK13223 175 SQSLFVGDSRSDVLAAKAAGV 195 (272)
T ss_pred hHEEEECCCHHHHHHHHHCCC
Confidence 789999999643332233444
No 96
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=82.42 E-value=5.2 Score=44.56 Aligned_cols=100 Identities=16% Similarity=0.089 Sum_probs=60.1
Q ss_pred HhhhHHHHhhhcCCCeEEEEeCCCceeecccCC--------CCCCc-hhhhhhhccccccCCCcceeeeeccceEEEEec
Q 000897 906 TRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFH--------EVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR 976 (1234)
Q Consensus 906 akrL~~Q~kLLs~KKLTLVLDLDETLIHSs~~~--------elDP~-~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklR 976 (1234)
++....+..+-..+|..+|||+|||++...... .+++. .++|+... --.--
T Consensus 63 a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~--------------------~apai 122 (229)
T TIGR01675 63 AYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKG--------------------AAPAL 122 (229)
T ss_pred HHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcC--------------------CCCCC
Confidence 333333333445799999999999999765210 01110 11121100 01356
Q ss_pred CCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 000897 977 PGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1234)
Q Consensus 977 PGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRD 1025 (1234)
|++.+|++++. .-++|++.|.-........++.|.-.|--.-.+++-|.
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecC
Confidence 88999999985 57999999999888866676766555521113455554
No 97
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=82.29 E-value=0.8 Score=46.52 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=60.6
Q ss_pred EEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-C
Q 000897 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s 1051 (1234)
+..-|+ .++|+.+.+.+.+.|-|++.+.+++.+++.+.=.+ +|.. |++.++... .++. +..+..-++ .+|.. +
T Consensus 87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~~-~KP~-p~~~~~~~~-~~~~~~~ 160 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDA-VVAADDVQH-HKPA-PDTFLRCAQ-LMGVQPT 160 (188)
T ss_pred CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceE-EEehhhccC-CCCC-hHHHHHHHH-HcCCCHH
Confidence 345576 48999998889999999999999999999886544 7764 777665421 1211 112333333 35655 7
Q ss_pred eEEEEeCCCCccccCcCCcc
Q 000897 1052 AVVIIDDSVRVWPHNKLNLI 1071 (1234)
Q Consensus 1052 ~VVIVDDsp~VW~~qpdNgI 1071 (1234)
.+|+|+|++.-...-...|+
T Consensus 161 ~~l~igDs~~di~aA~~aG~ 180 (188)
T PRK10725 161 QCVVFEDADFGIQAARAAGM 180 (188)
T ss_pred HeEEEeccHhhHHHHHHCCC
Confidence 89999999755433233343
No 98
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=81.94 E-value=1.6 Score=51.61 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=61.4
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.+.||+.+||+.|.+ .+.+.|-|++.+.|++.+++.+.=.. ||.. |++.+++.. .++. +..+.+-+. .+|..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~-Iv~sddv~~-~KP~-Peifl~A~~-~lgl~P 289 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSV-IVAAEDVYR-GKPD-PEMFIYAAQ-LLNFIP 289 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceE-EEecCcCCC-CCCC-HHHHHHHHH-HcCCCc
Confidence 4578999999999965 59999999999999999999887554 7875 776665421 1211 112333444 35655
Q ss_pred CeEEEEeCCCCcc
Q 000897 1051 SAVVIIDDSVRVW 1063 (1234)
Q Consensus 1051 s~VVIVDDsp~VW 1063 (1234)
+.+|+|+|+..-.
T Consensus 290 eecl~IGDS~~DI 302 (381)
T PLN02575 290 ERCIVFGNSNQTV 302 (381)
T ss_pred ccEEEEcCCHHHH
Confidence 7899999987544
No 99
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=81.62 E-value=3 Score=43.97 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=28.5
Q ss_pred CCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCC
Q 000897 977 PGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKG 1014 (1234)
Q Consensus 977 PGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g 1014 (1234)
|...+-|+++.+ -+.++|.|.-....+..+++.|+.++
T Consensus 21 ~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 21 ERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 344555666654 48899999998888889988888664
No 100
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=81.61 E-value=3.2 Score=45.03 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=26.8
Q ss_pred CHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhcC
Q 000897 978 GIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 1012 (1234)
Q Consensus 978 GLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLDP 1012 (1234)
...++|+++.+. ..++|.|.-+...+..+++.|.-
T Consensus 19 ~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 19 PAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 356788887754 88889998888888888877763
No 101
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=81.09 E-value=2.7 Score=44.27 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=28.1
Q ss_pred HHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcC
Q 000897 979 IWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDP 1012 (1234)
Q Consensus 979 LdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP 1012 (1234)
..+.|+++.+ ...++|.|......+..+++.|.-
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~ 55 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGL 55 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 4567888765 489999999999999999998763
No 102
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=80.25 E-value=1.5 Score=44.27 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=52.9
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.+.||+.+||+.|.+ .|.++|-|++ .++..+++.+.-.. +|.. ++..+++.. .++. +..+.+=++ -+|..
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~-v~~~~~~~~-~kp~-~~~~~~~~~-~~~~~~ 159 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDA-IVDADEVKE-GKPH-PETFLLAAE-LLGVSP 159 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCE-eeehhhCCC-CCCC-hHHHHHHHH-HcCCCH
Confidence 6789999999999976 5889999988 78888888765443 6765 554443221 1110 001222222 23555
Q ss_pred CeEEEEeCCCC
Q 000897 1051 SAVVIIDDSVR 1061 (1234)
Q Consensus 1051 s~VVIVDDsp~ 1061 (1234)
+.+|+|+|+..
T Consensus 160 ~~~v~IgD~~~ 170 (185)
T TIGR02009 160 NECVVFEDALA 170 (185)
T ss_pred HHeEEEeCcHh
Confidence 78999999964
No 103
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=79.91 E-value=3.7 Score=44.32 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=27.7
Q ss_pred CCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCC
Q 000897 977 PGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPK 1013 (1234)
Q Consensus 977 PGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~ 1013 (1234)
|...+.|+++.+ .+.++|-|......+..+++.+...
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 344556777665 4889999999988888888877654
No 104
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=79.81 E-value=4.1 Score=44.80 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=38.3
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEc
Q 000897 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT 996 (1234)
Q Consensus 918 ~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFT 996 (1234)
+.++.+++|||+||++.... +. |...+-|+++.+ -..++|.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~--i~-----------------------------------~~~~~ai~~l~~~Gi~~viaT 47 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY--DW-----------------------------------QPAAPWLTRLREAQVPVILCS 47 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc--Cc-----------------------------------HHHHHHHHHHHHcCCeEEEEc
Confidence 45678999999999986321 11 112334555543 47778888
Q ss_pred CCcHHHHHHHHHHhcCC
Q 000897 997 MGNKLYATEMAKVLDPK 1013 (1234)
Q Consensus 997 AGtk~YAd~VLdiLDP~ 1013 (1234)
.-....+..+++.|+.+
T Consensus 48 GR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 48 SKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 77777777777777543
No 105
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=79.54 E-value=4 Score=40.34 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=53.8
Q ss_pred EEEecCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 972 yVklRPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
.....||+.++|+.+. +.+.++|.|++.+.++..+++.+ - ..+|. .++..++.. .++. +..+.+=+. .+|..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~-~i~~~~~~~--~Kp~-~~~~~~~~~-~~~~~ 134 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFD-LILGSDEFG--AKPE-PEIFLAALE-SLGLP 134 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCc-EEEecCCCC--CCcC-HHHHHHHHH-HcCCC
Confidence 3455699999999995 56999999999999999999984 1 23565 466655432 2211 112222232 23433
Q ss_pred CeEEEEeCCC
Q 000897 1051 SAVVIIDDSV 1060 (1234)
Q Consensus 1051 s~VVIVDDsp 1060 (1234)
..+|+|.|+.
T Consensus 135 ~~~l~iGDs~ 144 (154)
T TIGR01549 135 PEVLHVGDNL 144 (154)
T ss_pred CCEEEEeCCH
Confidence 3799999984
No 106
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=79.51 E-value=2.2 Score=47.79 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=59.8
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeee-eeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAG-RVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~-RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
+.+.||+.+||+++.+ .|.++|.|++...++..+++.+.-.+ +|.. .++..+++.. .++. +..+.+=+. .+|.+
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~-~KP~-p~~~~~a~~-~~~~~ 218 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RAQGLDVFAGDDVPK-KKPD-PDIYNLAAE-TLGVD 218 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-ccCceEEEeccccCC-CCCC-HHHHHHHHH-HhCcC
Confidence 5789999999999975 69999999999999999998662111 2321 2334443321 1110 111222233 34655
Q ss_pred -CeEEEEeCCCCccccCcCCccc
Q 000897 1051 -SAVVIIDDSVRVWPHNKLNLIV 1072 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW~~qpdNgI~ 1072 (1234)
..+|+|+|++.-+..-...|+.
T Consensus 219 p~~~l~IGDs~~Di~aA~~aG~~ 241 (286)
T PLN02779 219 PSRCVVVEDSVIGLQAAKAAGMR 241 (286)
T ss_pred hHHEEEEeCCHHhHHHHHHcCCE
Confidence 7899999998655433344544
No 107
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=79.50 E-value=3 Score=47.50 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=43.3
Q ss_pred EEEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHh---cCCCceeeeeeee
Q 000897 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL---DPKGVLFAGRVIS 1023 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiL---DP~g~LFs~RIyS 1023 (1234)
-+.+|||+.+||+.|.+ .+.++|+|+|...+++.+++.+ ++...++++++..
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f 174 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDF 174 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEE
Confidence 47899999999999965 5899999999999999999953 3555677777653
No 108
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=79.39 E-value=5.4 Score=42.98 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=35.0
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEcCC
Q 000897 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 998 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFTAG 998 (1234)
.+.+++|||+||+.... .++| ...+-|+++.+ -..++|-|.-
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~~-----------------------------------~~~~ai~~~~~~G~~~~iaTGR 45 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--TILP-----------------------------------ESLEALARAREAGYKVIIVTGR 45 (272)
T ss_pred ccEEEEeCCCceECCCC--ccCH-----------------------------------HHHHHHHHHHHCCCEEEEEcCC
Confidence 35789999999997542 1222 22334444443 4667777766
Q ss_pred cHHHHHHHHHHhcCC
Q 000897 999 NKLYATEMAKVLDPK 1013 (1234)
Q Consensus 999 tk~YAd~VLdiLDP~ 1013 (1234)
....+..+++.|...
T Consensus 46 ~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 46 HHVAIHPFYQALALD 60 (272)
T ss_pred ChHHHHHHHHhcCCC
Confidence 666666666666544
No 109
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=79.38 E-value=1.1 Score=46.57 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=55.7
Q ss_pred EEEEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCC
Q 000897 971 MWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 1049 (1234)
Q Consensus 971 ~yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGr 1049 (1234)
++..++||+.++|+.+.+ .|.++|.|++.+.....++....--..+|.. +++-+++.. .+++ +..|.+-++ .+|.
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~-v~~s~~~~~-~KP~-p~~~~~~~~-~~~~ 156 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADH-IYLSQDLGM-RKPE-ARIYQHVLQ-AEGF 156 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCE-EEEecccCC-CCCC-HHHHHHHHH-HcCC
Confidence 346789999999999975 5999999999988766544321111235654 665444332 2221 112333343 3565
Q ss_pred C-CeEEEEeCCCCcc
Q 000897 1050 E-SAVVIIDDSVRVW 1063 (1234)
Q Consensus 1050 d-s~VVIVDDsp~VW 1063 (1234)
. +.+|+|||++.-.
T Consensus 157 ~p~~~l~vgD~~~di 171 (199)
T PRK09456 157 SAADAVFFDDNADNI 171 (199)
T ss_pred ChhHeEEeCCCHHHH
Confidence 5 7899999997543
No 110
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=79.11 E-value=4.4 Score=41.35 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=42.4
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeee
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1023 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIyS 1023 (1234)
+.++||+.++|+.+.+ -+.++|.|++...++..+++.+.... +|...+..
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~ 129 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVF 129 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEE
Confidence 6789999999999974 69999999999999999999987553 67665554
No 111
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=78.96 E-value=3.9 Score=44.32 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=38.5
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcC-ceEEEEcCC
Q 000897 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 998 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~-YEIVIFTAG 998 (1234)
.+.+++||||||++... .++ |...+-|+++.+. +.++|-|.-
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~-----------------------------------~~~~~ai~~l~~~G~~~~iaTGR 45 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH--TIS-----------------------------------PAVKQAIAAARAKGVNVVLTTGR 45 (270)
T ss_pred eEEEEEecCCcCcCCCC--ccC-----------------------------------HHHHHHHHHHHHCCCEEEEecCC
Confidence 45789999999997642 122 2233556666543 778888887
Q ss_pred cHHHHHHHHHHhcCC
Q 000897 999 NKLYATEMAKVLDPK 1013 (1234)
Q Consensus 999 tk~YAd~VLdiLDP~ 1013 (1234)
....+..+++.|...
T Consensus 46 ~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 46 PYAGVHRYLKELHME 60 (270)
T ss_pred ChHHHHHHHHHhCCC
Confidence 777777787777643
No 112
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=78.93 E-value=2.3 Score=47.40 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=85.9
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhcc---ccccCCCcceee--e---eccceEEEEecCCHHHHHHHhhc-C
Q 000897 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKE---EQDREKPHRHLF--R---FPHMGMWTKLRPGIWTFLERASK-L 989 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kE---e~D~~~P~~~lF--~---~~~~~~yVklRPGLdEFLeeLSk-~ 989 (1234)
....+|+|+|+||+-....- ..+...++...+- ..+........| . +....-+...-|.+.+|++.++. .
T Consensus 19 ~~tLvvfDiDdTLi~~~~~l-g~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~ 97 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPL-GSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKG 97 (252)
T ss_pred CCeEEEEEcchhhhcCcccc-CCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCC
Confidence 77889999999999766211 1222222221110 000001111111 0 11123356788999999999985 5
Q ss_pred ceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCC------CCC-------CCCC-----C-CCCCccccCccccCCC
Q 000897 990 FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGD------DGD-------PFDG-----D-ERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 990 YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDd------c~~-------~~dG-----~-Er~~~iKDLsrVLGrd 1050 (1234)
.-++.+|+....|...-++.|--.|.-|..+.+..+. |+. +.+| + .....++.+-..+|..
T Consensus 98 ~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~ 177 (252)
T PF11019_consen 98 IPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQS 177 (252)
T ss_pred CcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCCC
Confidence 9999999999999999998875555445443211110 000 1111 0 0001112221123544
Q ss_pred -CeEEEEeCCCCccc----cCcCCcccccccccc
Q 000897 1051 -SAVVIIDDSVRVWP----HNKLNLIVVERYTYF 1079 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW~----~qpdNgI~IkpY~yF 1079 (1234)
+.||+|||+...-. .....+|...-|+|-
T Consensus 178 pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 178 PKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 89999999985432 123466666666663
No 113
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=77.96 E-value=3.6 Score=42.68 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=29.0
Q ss_pred cCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHh
Q 000897 976 RPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 1010 (1234)
Q Consensus 976 RPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiL 1010 (1234)
.|.+.+.|+++.+. ..++|-|.....++..+++.+
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 45677788888766 789999999999999998875
No 114
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=77.30 E-value=3.5 Score=42.89 Aligned_cols=81 Identities=17% Similarity=0.077 Sum_probs=54.8
Q ss_pred EecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-C
Q 000897 974 KLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1234)
Q Consensus 974 klRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s 1051 (1234)
...|+..++|+.|.+ -+.++|.|++.+.++..+++.+.=.. +|.. +++.++... ++ .+..+.+-+. -+|.+ +
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~-~~~~~~~~~--KP-~p~~~~~~~~-~~~~~~~ 179 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPV-QIWMEDCPP--KP-NPEPLILAAK-ALGVEAC 179 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCE-EEeecCCCC--Cc-CHHHHHHHHH-HhCcCcc
Confidence 345566999999986 49999999999999999999886553 6764 565554321 21 1112233333 24555 7
Q ss_pred eEEEEeCCC
Q 000897 1052 AVVIIDDSV 1060 (1234)
Q Consensus 1052 ~VVIVDDsp 1060 (1234)
.+|+|+|++
T Consensus 180 ~~i~vGD~~ 188 (197)
T TIGR01548 180 HAAMVGDTV 188 (197)
T ss_pred cEEEEeCCH
Confidence 899999986
No 115
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=76.46 E-value=6.5 Score=41.41 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=39.6
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEcCCc
Q 000897 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 999 (1234)
Q Consensus 921 LTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFTAGt 999 (1234)
+.|++|||+||+.... . +.|...+-|+++.+ -..++|-|.-.
T Consensus 4 kli~~DlDGTLl~~~~--~-----------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~ 46 (230)
T PRK01158 4 KAIAIDIDGTITDKDR--R-----------------------------------LSLKAVEAIRKAEKLGIPVILATGNV 46 (230)
T ss_pred eEEEEecCCCcCCCCC--c-----------------------------------cCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 5789999999996531 1 22334455666654 46888888888
Q ss_pred HHHHHHHHHHhcCCC
Q 000897 1000 KLYATEMAKVLDPKG 1014 (1234)
Q Consensus 1000 k~YAd~VLdiLDP~g 1014 (1234)
...+..+++.|...+
T Consensus 47 ~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 47 LCFARAAAKLIGTSG 61 (230)
T ss_pred hHHHHHHHHHhCCCC
Confidence 888888888776543
No 116
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=76.31 E-value=5.1 Score=47.55 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=62.4
Q ss_pred hccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCC--CCHHHHHHHhcCCcEEcHHHHHHHHH
Q 000897 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL--GTDKVNWALSTGRFVVHPGWVEASAL 1220 (1234)
Q Consensus 1143 ILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~--gT~KVr~Akk~GIkIVSPdWLedClk 1220 (1234)
.-+|..|+|+|-+-. ++..|...+...|-.|+.+++..+.-|||+.+ .+-|...|...||++|+-.=+.+++.
T Consensus 294 lv~Gm~v~~~~e~~~-----~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 294 LVAGMEVVVAPEITM-----DPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred cccCcEEEEeCCccC-----CHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 567999999986433 35678888999999999999999999999975 46799999999999999887777765
Q ss_pred h
Q 000897 1221 L 1221 (1234)
Q Consensus 1221 ~ 1221 (1234)
.
T Consensus 369 ~ 369 (377)
T PRK05601 369 R 369 (377)
T ss_pred H
Confidence 3
No 117
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=76.30 E-value=3.9 Score=42.30 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=52.4
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.+.||+.++|++|.+ .|.++|.|++...+ ..+++.+.=. .+|.. ++..+++. ..+++ +..+.+-++ -+|..
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~~ 177 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLL-EYFDF-VVTSYEVG-AEKPD-PKIFQEALE-RAGISP 177 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcH-Hhcce-EEeecccC-CCCCC-HHHHHHHHH-HcCCCh
Confidence 3678999999999986 49999999998764 6677665433 26764 55444332 11211 111223333 34655
Q ss_pred CeEEEEeCCC
Q 000897 1051 SAVVIIDDSV 1060 (1234)
Q Consensus 1051 s~VVIVDDsp 1060 (1234)
..+|+|+|+.
T Consensus 178 ~~~~~IgD~~ 187 (203)
T TIGR02252 178 EEALHIGDSL 187 (203)
T ss_pred hHEEEECCCc
Confidence 7899999985
No 118
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=75.42 E-value=4.7 Score=44.15 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=62.3
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCC-C
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGr-d 1050 (1234)
+.+-||+.++|+.|.+ .|.+.|-|++.+.++..+++.+.-.+ +|...+++.++... .++ ++..+.+-+. -+|. +
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~-~KP-~p~~~~~a~~-~l~~~~ 175 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPA-GRP-YPWMALKNAI-ELGVYD 175 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCC-CCC-ChHHHHHHHH-HcCCCC
Confidence 5678999999999975 69999999999999999998765444 33244666554321 121 1112334444 3454 3
Q ss_pred -CeEEEEeCCCCccccCcCCccc
Q 000897 1051 -SAVVIIDDSVRVWPHNKLNLIV 1072 (1234)
Q Consensus 1051 -s~VVIVDDsp~VW~~qpdNgI~ 1072 (1234)
+.+|+|+|++.-...-...|+.
T Consensus 176 ~~e~l~IGDs~~Di~aA~~aG~~ 198 (267)
T PRK13478 176 VAACVKVDDTVPGIEEGLNAGMW 198 (267)
T ss_pred CcceEEEcCcHHHHHHHHHCCCE
Confidence 6799999998444332344543
No 119
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=75.21 E-value=1.7 Score=45.24 Aligned_cols=87 Identities=25% Similarity=0.158 Sum_probs=50.6
Q ss_pred EEEecCCHHHHHHHhhc-CceEEEEcCCcHHH--HHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccC
Q 000897 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLY--ATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1048 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~Y--Ad~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLG 1048 (1234)
.+.+.||+.+||++|.+ .|.++|.|++...+ +...+..++- ..+|.. ++..+++. ..+++ +..|.+-++ .+|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l-~~~fd~-v~~s~~~~-~~KP~-p~~~~~~~~-~~g 166 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDI-MALFDA-VVESCLEG-LRKPD-PRIYQLMLE-RLG 166 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhh-HhhCCE-EEEeeecC-CCCCC-HHHHHHHHH-HcC
Confidence 46689999999999986 59999999987655 2222221211 135654 55433221 11211 112333333 356
Q ss_pred CC-CeEEEEeCCCCcc
Q 000897 1049 ME-SAVVIIDDSVRVW 1063 (1234)
Q Consensus 1049 rd-s~VVIVDDsp~VW 1063 (1234)
.. +.+|+|||+..-.
T Consensus 167 ~~~~~~l~i~D~~~di 182 (211)
T TIGR02247 167 VAPEECVFLDDLGSNL 182 (211)
T ss_pred CCHHHeEEEcCCHHHH
Confidence 55 7788899986543
No 120
>PLN02940 riboflavin kinase
Probab=74.61 E-value=2.5 Score=49.41 Aligned_cols=85 Identities=15% Similarity=0.081 Sum_probs=56.9
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHH-HhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAK-VLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLd-iLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd 1050 (1234)
+.+.||+.++|+.|.+ .+.+.|-|++.+.++..+++ .++=. .+|.. +++.+++.. .+. .+..+.+-++ .+|-.
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~-ii~~d~v~~-~KP-~p~~~~~a~~-~lgv~ 166 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSV-IVGGDEVEK-GKP-SPDIFLEAAK-RLNVE 166 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCE-EEehhhcCC-CCC-CHHHHHHHHH-HcCCC
Confidence 5678999999999965 59999999999999998876 44432 36765 666555421 111 1112233333 24554
Q ss_pred -CeEEEEeCCCCc
Q 000897 1051 -SAVVIIDDSVRV 1062 (1234)
Q Consensus 1051 -s~VVIVDDsp~V 1062 (1234)
..+|+|+|+..-
T Consensus 167 p~~~l~VGDs~~D 179 (382)
T PLN02940 167 PSNCLVIEDSLPG 179 (382)
T ss_pred hhHEEEEeCCHHH
Confidence 789999999843
No 121
>PHA02597 30.2 hypothetical protein; Provisional
Probab=74.49 E-value=2.6 Score=43.62 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=57.4
Q ss_pred EEEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCC---ceeeeeeeecCCCCCCCCCCCCCCccccCccccC
Q 000897 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKG---VLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1048 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g---~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLG 1048 (1234)
.+...||+.++|++|.+.|.+++-|++.......+++.+.-.+ .+|.+ +++.+++. +. +..+.+-++ .+|
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~-i~~~~~~~----~k-p~~~~~a~~-~~~ 144 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSE-VLMCGHDE----SK-EKLFIKAKE-KYG 144 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccE-EEEeccCc----cc-HHHHHHHHH-HhC
Confidence 3668999999999999888888888877665555666553221 14543 44433321 11 112222232 345
Q ss_pred CCCeEEEEeCCCCccccCcCC--ccccc
Q 000897 1049 MESAVVIIDDSVRVWPHNKLN--LIVVE 1074 (1234)
Q Consensus 1049 rds~VVIVDDsp~VW~~qpdN--gI~Ik 1074 (1234)
.+.+|+|||+..-...-... ||.+-
T Consensus 145 -~~~~v~vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 145 -DRVVCFVDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred -CCcEEEeCCCHHHHHHHHHHHcCCcEE
Confidence 56799999998765443445 66544
No 122
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=74.47 E-value=4.8 Score=43.28 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=43.3
Q ss_pred EEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeee
Q 000897 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1023 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIyS 1023 (1234)
+.++||+.+||+.+.+.+.++|-|++...|+..+++.+.-+. +|.+++..
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~ 116 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEI 116 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEE
Confidence 578999999999998888999999999999999999987653 67766553
No 123
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=74.37 E-value=3.8 Score=43.53 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=35.1
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHh
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL 1010 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiL 1010 (1234)
+.++||+.+||+.+.+ .+.++|.|++...|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 6899999999999975 5999999999999999999876
No 124
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=74.04 E-value=6.3 Score=42.84 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=27.2
Q ss_pred HHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhcC
Q 000897 979 IWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 1012 (1234)
Q Consensus 979 LdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLDP 1012 (1234)
..++|+++.+. +.++|.|.-....+..+++.++.
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 56788887764 88999998888888888888763
No 125
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=74.01 E-value=6.2 Score=39.57 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=40.5
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeee
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIy 1022 (1234)
+.+|||+.++|+.+.+ .+.++|.|++.+.|++.+++.+.-. .+|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEE
Confidence 5689999999999965 5899999999999999999988654 35665543
No 126
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=73.71 E-value=5 Score=41.54 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=40.9
Q ss_pred EEEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeee
Q 000897 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1021 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RI 1021 (1234)
.+.++||+.+||+.+.+.+.++|.|++...|++.+++.++-.. +|.+++
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~ 114 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSL 114 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceE
Confidence 3567899999999998779999999999999999999876543 565544
No 127
>PRK10444 UMP phosphatase; Provisional
Probab=72.50 E-value=6.5 Score=43.53 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=12.2
Q ss_pred EEEEeCCCceeecc
Q 000897 922 CLVLDLDHTLLNSA 935 (1234)
Q Consensus 922 TLVLDLDETLIHSs 935 (1234)
.+++|||+||++..
T Consensus 3 ~v~~DlDGtL~~~~ 16 (248)
T PRK10444 3 NVICDIDGVLMHDN 16 (248)
T ss_pred EEEEeCCCceEeCC
Confidence 68899999999864
No 128
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=72.27 E-value=7.2 Score=40.84 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=19.3
Q ss_pred HHHHHhhc-CceEEEEcCCcHHHHHHHHHHhc
Q 000897 981 TFLERASK-LFEMHLYTMGNKLYATEMAKVLD 1011 (1234)
Q Consensus 981 EFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLD 1011 (1234)
+-|+++.+ -..++|.|.-....+.++++.|.
T Consensus 22 ~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~ 53 (225)
T TIGR01482 22 EAIRKAESVGIPVVLVTGNSVQFARALAKLIG 53 (225)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 34455443 36777777766666667776665
No 129
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=72.24 E-value=7.5 Score=42.46 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=22.9
Q ss_pred chHHHHHHHhCCEEecccC-----------CCccEEEeCCCCCHHHHHH
Q 000897 1165 HPLWQTAEQFGAVCTKHID-----------DQVTHVVANSLGTDKVNWA 1202 (1234)
Q Consensus 1165 ~~LwkLAesLGAtVssdId-----------~kVTHLVAt~~gT~KVr~A 1202 (1234)
..+..+++.+|-....-+. +.+.|=||-....+.++.+
T Consensus 191 ~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~ 239 (272)
T PRK15126 191 AALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAE 239 (272)
T ss_pred HHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHh
Confidence 5677888888854322111 2456777766666766654
No 130
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=71.68 E-value=5 Score=45.00 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=54.9
Q ss_pred EEecCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.+.||+.++|+.|. +.+.+.|.|++.+.++..+++.++-.. +|.. +++.++. .. ....+.+=+. .++..
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~-vi~~~~~---~~--k~~~~~~~l~-~~~~~p 212 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSV-VQAGTPI---LS--KRRALSQLVA-REGWQP 212 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEE-EEecCCC---CC--CHHHHHHHHH-HhCcCh
Confidence 566899999999997 468999999999999999999887654 6764 5443221 00 0001111122 23444
Q ss_pred CeEEEEeCCCC
Q 000897 1051 SAVVIIDDSVR 1061 (1234)
Q Consensus 1051 s~VVIVDDsp~ 1061 (1234)
+.+|+|+|++.
T Consensus 213 ~~~l~IGDs~~ 223 (273)
T PRK13225 213 AAVMYVGDETR 223 (273)
T ss_pred hHEEEECCCHH
Confidence 78999999974
No 131
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=71.23 E-value=7.5 Score=40.32 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=23.5
Q ss_pred ecCCHHHHHHHhhc-CceEEEEcCCcHHHHH
Q 000897 975 LRPGIWTFLERASK-LFEMHLYTMGNKLYAT 1004 (1234)
Q Consensus 975 lRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd 1004 (1234)
..|++.++++++.+ -|.+++.|.....-+.
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~ 58 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQAD 58 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHH
Confidence 47999999999886 5777777777766664
No 132
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=71.00 E-value=6.1 Score=41.45 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=58.0
Q ss_pred EEecCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCC-CceeeeeeeecCCCCCCCCCCCCCCccccCccccCC-
Q 000897 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM- 1049 (1234)
Q Consensus 973 VklRPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~-g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGr- 1049 (1234)
+.+.||+.+||++|. +.|.+.|.|++...++..+++.++-. +.+|.. +++.++-. ..+. .+..+.+=+. -+|.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~-i~~~~~~~-~~KP-~p~~~~~a~~-~~~~~ 161 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDA-VVCPSDVA-AGRP-APDLILRAME-LTGVQ 161 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCE-EEcCCcCC-CCCC-CHHHHHHHHH-HcCCC
Confidence 479999999999996 56999999999999999999988754 257764 66554321 1111 0111222233 2454
Q ss_pred -CCeEEEEeCCCC
Q 000897 1050 -ESAVVIIDDSVR 1061 (1234)
Q Consensus 1050 -ds~VVIVDDsp~ 1061 (1234)
.+.+|+|+|++.
T Consensus 162 ~~~~~~~igD~~~ 174 (220)
T TIGR03351 162 DVQSVAVAGDTPN 174 (220)
T ss_pred ChhHeEEeCCCHH
Confidence 268999999973
No 133
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=70.41 E-value=6.4 Score=46.83 Aligned_cols=92 Identities=11% Similarity=0.037 Sum_probs=59.8
Q ss_pred EEecCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCCC
Q 000897 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 1051 (1234)
Q Consensus 973 VklRPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrds 1051 (1234)
+.+.||+.++|++|. +.+.+.|.|++.+.|+..+++.++=.. +|.. +++.++... .+ .+..+.+-+.+ ++ .+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~-i~~~d~v~~--~~-kP~~~~~al~~-l~-~~ 401 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTE-TFSIEQINS--LN-KSDLVKSILNK-YD-IK 401 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcce-eEecCCCCC--CC-CcHHHHHHHHh-cC-cc
Confidence 567899999999996 469999999999999999999877654 6764 665443210 01 01123232322 22 26
Q ss_pred eEEEEeCCCCccccCcCCcc
Q 000897 1052 AVVIIDDSVRVWPHNKLNLI 1071 (1234)
Q Consensus 1052 ~VVIVDDsp~VW~~qpdNgI 1071 (1234)
.+|+|.|++.-...-...|+
T Consensus 402 ~~v~VGDs~~Di~aAk~AG~ 421 (459)
T PRK06698 402 EAAVVGDRLSDINAAKDNGL 421 (459)
T ss_pred eEEEEeCCHHHHHHHHHCCC
Confidence 79999999743332233444
No 134
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=69.29 E-value=11 Score=48.31 Aligned_cols=63 Identities=29% Similarity=0.371 Sum_probs=45.5
Q ss_pred HHHHHhCCEEecccC------CCccEEEeCCCC--CHHH--HHHHh--cCCcEEcHHHHHHHHHhccCCCCCCCC
Q 000897 1169 QTAEQFGAVCTKHID------DQVTHVVANSLG--TDKV--NWALS--TGRFVVHPGWVEASALLYRRANEQDFA 1231 (1234)
Q Consensus 1169 kLAesLGAtVssdId------~kVTHLVAt~~g--T~KV--r~Akk--~GIkIVSPdWLedClk~wkRVDEsdYl 1231 (1234)
-.+..+|+.+...-. ..+||+|+...+ ..+. ..|.+ ...+||.|.|+.+|......++|..|+
T Consensus 807 l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 807 LKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred HHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCccccCC
Confidence 347788999865543 368999998432 2222 22322 234999999999999999999999995
No 135
>PLN03017 trehalose-phosphatase
Probab=68.88 E-value=7.7 Score=45.93 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=46.0
Q ss_pred HhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceE
Q 000897 913 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 992 (1234)
Q Consensus 913 ~kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEI 992 (1234)
......+++.|+||+||||+--.. +|. ....-|.+.+-|++|++.+.+
T Consensus 104 ~~~~~~k~~llflD~DGTL~Piv~----~p~----------------------------~a~i~~~~~~aL~~La~~~~v 151 (366)
T PLN03017 104 MEASRGKQIVMFLDYDGTLSPIVD----DPD----------------------------KAFMSSKMRRTVKKLAKCFPT 151 (366)
T ss_pred HHHhcCCCeEEEEecCCcCcCCcC----Ccc----------------------------cccCCHHHHHHHHHHhcCCcE
Confidence 445678999999999999993221 111 012446778889999999999
Q ss_pred EEEcCCcHHHHHHHHH
Q 000897 993 HLYTMGNKLYATEMAK 1008 (1234)
Q Consensus 993 VIFTAGtk~YAd~VLd 1008 (1234)
+|-|--...-+..++.
T Consensus 152 aIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 152 AIVTGRCIDKVYNFVK 167 (366)
T ss_pred EEEeCCCHHHHHHhhc
Confidence 9998877777776643
No 136
>PRK10976 putative hydrolase; Provisional
Probab=68.74 E-value=11 Score=41.04 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=12.9
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
+.+++|||+||++..
T Consensus 3 kli~~DlDGTLl~~~ 17 (266)
T PRK10976 3 QVVASDLDGTLLSPD 17 (266)
T ss_pred eEEEEeCCCCCcCCC
Confidence 578999999999764
No 137
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=68.67 E-value=6.3 Score=43.16 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=55.4
Q ss_pred EEEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCC--CceeeeeeeecCCCCCCCCCCCCCCccccCccccC
Q 000897 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPK--GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1048 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~--g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLG 1048 (1234)
...+.|++.++|+++.+ .|.++|+|++...+...+++..+-. ..+|.. +|... .+ .+. +...|.+=+. -+|
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~-~fd~~-~g--~KP-~p~~y~~i~~-~lg 166 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSG-YFDTT-VG--LKT-EAQSYVKIAG-QLG 166 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcce-EEEeC-cc--cCC-CHHHHHHHHH-HhC
Confidence 35689999999999964 6999999999999999888775311 124553 33211 11 111 1113334344 346
Q ss_pred CC-CeEEEEeCCCCcc
Q 000897 1049 ME-SAVVIIDDSVRVW 1063 (1234)
Q Consensus 1049 rd-s~VVIVDDsp~VW 1063 (1234)
.. +.+++|+|+..-.
T Consensus 167 v~p~e~lfVgDs~~Di 182 (220)
T TIGR01691 167 SPPREILFLSDIINEL 182 (220)
T ss_pred cChhHEEEEeCCHHHH
Confidence 55 7899999997443
No 138
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=68.61 E-value=7.8 Score=42.82 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=32.7
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEcCCcH
Q 000897 922 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGNK 1000 (1234)
Q Consensus 922 TLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFTAGtk 1000 (1234)
++++|||+||++..... . ..=|+..+||+++.+ -..+++.|+.+.
T Consensus 3 ~i~~D~DGtl~~~~~~~------~----------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~ 48 (257)
T TIGR01458 3 GVLLDISGVLYISDAKS------G----------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTK 48 (257)
T ss_pred EEEEeCCCeEEeCCCcc------c----------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCC
Confidence 78999999999864200 0 034688888888885 488888887555
Q ss_pred H
Q 000897 1001 L 1001 (1234)
Q Consensus 1001 ~ 1001 (1234)
.
T Consensus 49 ~ 49 (257)
T TIGR01458 49 E 49 (257)
T ss_pred C
Confidence 4
No 139
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=68.60 E-value=8.9 Score=42.18 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=48.1
Q ss_pred cCCCeEEEEeCCCceeecccCC--------CCCCc-hhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhh
Q 000897 917 SARKLCLVLDLDHTLLNSAKFH--------EVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 987 (1234)
Q Consensus 917 s~KKLTLVLDLDETLIHSs~~~--------elDP~-~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLS 987 (1234)
..+++.+||||||||+....+. .+++. .++|+. .... ..=|+..+|++.+.
T Consensus 69 ~~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~-----------------~~~~---~aip~a~~l~~~~~ 128 (229)
T PF03767_consen 69 ADKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVA-----------------SGKA---PAIPGALELYNYAR 128 (229)
T ss_dssp HTSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHH-----------------CTGG---EEETTHHHHHHHHH
T ss_pred cCCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHh-----------------cccC---cccHHHHHHHHHHH
Confidence 3799999999999999654210 00010 011111 0011 35588999999987
Q ss_pred cC-ceEEEEcCCcHHHHHHHHHHhcCCC
Q 000897 988 KL-FEMHLYTMGNKLYATEMAKVLDPKG 1014 (1234)
Q Consensus 988 k~-YEIVIFTAGtk~YAd~VLdiLDP~g 1014 (1234)
+. ++|++-|.-....-+.-++-|.-.|
T Consensus 129 ~~G~~V~~iT~R~~~~r~~T~~nL~~~G 156 (229)
T PF03767_consen 129 SRGVKVFFITGRPESQREATEKNLKKAG 156 (229)
T ss_dssp HTTEEEEEEEEEETTCHHHHHHHHHHHT
T ss_pred HCCCeEEEEecCCchhHHHHHHHHHHcC
Confidence 65 9999999877775555555554434
No 140
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=68.59 E-value=6.3 Score=44.14 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=38.9
Q ss_pred EEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeee
Q 000897 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAG 1019 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~ 1019 (1234)
++.-|-|++||-.|.+.+ .+|||+|.+..|..+++.|--.. .|..
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFeg 143 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEG 143 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccc
Confidence 677788999999999888 99999999999999999987654 4654
No 141
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=68.17 E-value=4.1 Score=43.96 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=63.1
Q ss_pred EEecCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
++..||+.+||+.|... .-+.+-|.+.+..+..+++.+.-.. +|...++ .++.... ++ .+..|.+-.. .||..
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~-~~dv~~~-KP-~Pd~yL~Aa~-~Lgv~P 159 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVT-ADDVARG-KP-APDIYLLAAE-RLGVDP 159 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhcc-HHHHhcC-CC-CCHHHHHHHH-HcCCCh
Confidence 68999999999999987 9999999999999999998887654 7877555 4433221 21 2234666666 46666
Q ss_pred CeEEEEeCCCC
Q 000897 1051 SAVVIIDDSVR 1061 (1234)
Q Consensus 1051 s~VVIVDDsp~ 1061 (1234)
.++|+|+|++.
T Consensus 160 ~~CvviEDs~~ 170 (221)
T COG0637 160 EECVVVEDSPA 170 (221)
T ss_pred HHeEEEecchh
Confidence 88999999974
No 142
>PLN02645 phosphoglycolate phosphatase
Probab=67.88 E-value=8.7 Score=43.59 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=38.8
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhh-cCceEEEEcC
Q 000897 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM 997 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLS-k~YEIVIFTA 997 (1234)
+-.++++|+|+||++... + + ||..++|+++. +...+++.|+
T Consensus 27 ~~~~~~~D~DGtl~~~~~------------------------------------~-~-~ga~e~l~~lr~~g~~~~~~TN 68 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDK------------------------------------L-I-EGVPETLDMLRSMGKKLVFVTN 68 (311)
T ss_pred hCCEEEEeCcCCeEeCCc------------------------------------c-C-cCHHHHHHHHHHCCCEEEEEeC
Confidence 345899999999997531 0 1 77888888886 4688888888
Q ss_pred CcHHHHHHHHHHhc
Q 000897 998 GNKLYATEMAKVLD 1011 (1234)
Q Consensus 998 Gtk~YAd~VLdiLD 1011 (1234)
.+..-...+++.|.
T Consensus 69 ~~~~~~~~~~~~l~ 82 (311)
T PLN02645 69 NSTKSRAQYGKKFE 82 (311)
T ss_pred CCCCCHHHHHHHHH
Confidence 77555555555443
No 143
>PLN02954 phosphoserine phosphatase
Probab=67.00 E-value=10 Score=39.82 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=40.4
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCC-ceeeeeee
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRVI 1022 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g-~LFs~RIy 1022 (1234)
..++||+.+||+.+.+ .+.++|-|++.+.|++.+++.+.-.. .+|..++.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~ 134 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQIL 134 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEE
Confidence 5688999999999965 58999999999999999999875432 36665443
No 144
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=65.48 E-value=8.6 Score=42.82 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=40.8
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc--CceEEEEc
Q 000897 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHLYT 996 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk--~YEIVIFT 996 (1234)
+++.|++|||+||+.... +|.. ..+-|.+.+-|+.|.+ ...++|.|
T Consensus 13 ~~~li~~D~DGTLl~~~~----~p~~----------------------------~~i~~~~~~~L~~L~~~~g~~v~i~S 60 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKP----HPDQ----------------------------VVVPDNILQGLQLLATANDGALALIS 60 (266)
T ss_pred CCEEEEEecCCCCCCCCC----Cccc----------------------------ccCCHHHHHHHHHHHhCCCCcEEEEe
Confidence 368899999999997542 2210 1134777888888886 46777777
Q ss_pred CCcHHHHHHHHHHh
Q 000897 997 MGNKLYATEMAKVL 1010 (1234)
Q Consensus 997 AGtk~YAd~VLdiL 1010 (1234)
--...-+..+++.+
T Consensus 61 GR~~~~~~~~~~~~ 74 (266)
T PRK10187 61 GRSMVELDALAKPY 74 (266)
T ss_pred CCCHHHHHHhcCcc
Confidence 77777666666544
No 145
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=64.48 E-value=18 Score=37.92 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=37.8
Q ss_pred cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCC
Q 000897 988 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1061 (1234)
Q Consensus 988 k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~ 1061 (1234)
+.+.++|-|.....++..+++.+.-.. +|.. +.. .+ ..++.+-.-+|.. +.+++|-|+..
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~g-------~~~--k~----~~l~~~~~~~gl~~~ev~~VGDs~~ 123 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LYQG-------QSN--KL----IAFSDLLEKLAIAPEQVAYIGDDLI 123 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-eecC-------CCc--HH----HHHHHHHHHhCCCHHHEEEECCCHH
Confidence 679999999999999999999886432 3321 100 00 1222222234655 67999988863
No 146
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=63.25 E-value=12 Score=40.06 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=42.5
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCc---eEE
Q 000897 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLF---EMH 993 (1234)
Q Consensus 917 s~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~Y---EIV 993 (1234)
..+=..||+|+|+||+.-.. . .+-|.+.+.|+++.+.| .|+
T Consensus 38 ~~Gik~li~DkDNTL~~~~~--------~----------------------------~i~~~~~~~~~~l~~~~~~~~v~ 81 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYE--------D----------------------------EIPPEYAEWLNELKKQFGKDRVL 81 (168)
T ss_pred hcCceEEEEcCCCCCCCCCc--------C----------------------------cCCHHHHHHHHHHHHHCCCCeEE
Confidence 45667899999999985331 0 13455677788888765 399
Q ss_pred EEcCC-------cHHHHHHHHHHhc
Q 000897 994 LYTMG-------NKLYATEMAKVLD 1011 (1234)
Q Consensus 994 IFTAG-------tk~YAd~VLdiLD 1011 (1234)
|++++ ...-|+.+-+.|.
T Consensus 82 IvSNsaGs~~d~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 82 IVSNSAGSSDDPDGERAEALEKALG 106 (168)
T ss_pred EEECCCCcccCccHHHHHHHHHhhC
Confidence 99998 3666777878776
No 147
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=63.11 E-value=13 Score=41.38 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=17.1
Q ss_pred CCHHHHHHHhhc-CceEEEEcCCc
Q 000897 977 PGIWTFLERASK-LFEMHLYTMGN 999 (1234)
Q Consensus 977 PGLdEFLeeLSk-~YEIVIFTAGt 999 (1234)
||..++|++|.+ ...+++.|+..
T Consensus 21 ~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 21 PGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCC
Confidence 667788888875 57788888744
No 148
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=63.10 E-value=2.5 Score=42.58 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=52.8
Q ss_pred EEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-C
Q 000897 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s 1051 (1234)
+..+||+.++|+. +.|.|++.+.|...+++.+.-. .+|.. +++.++.. ..++. +..|.+-++ .+|.. +
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-v~~~~~~~-~~KP~-p~~f~~~~~-~~~~~p~ 157 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYFDR-AFSVDTVR-AYKPD-PVVYELVFD-TVGLPPD 157 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHHhh-hccHhhcC-CCCCC-HHHHHHHHH-HHCCCHH
Confidence 5689999999994 7899999999999999987543 36764 66554322 22221 112334444 35665 7
Q ss_pred eEEEEeCCC
Q 000897 1052 AVVIIDDSV 1060 (1234)
Q Consensus 1052 ~VVIVDDsp 1060 (1234)
.+|+|+|+.
T Consensus 158 ~~l~vgD~~ 166 (175)
T TIGR01493 158 RVLMVAAHQ 166 (175)
T ss_pred HeEeEecCh
Confidence 899999995
No 149
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=62.22 E-value=7.6 Score=39.26 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=50.9
Q ss_pred EEecCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
+.+.||+.++|++|. ..+.+.|-|++. .+..+++.+.-.. +|.. ++..++-. ..++ .+..+.+-++ .++.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~kp-~p~~~~~~~~-~~~~~~ 158 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDA-IVDPAEIK-KGKP-DPEIFLAAAE-GLGVSP 158 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcE-EEehhhcC-CCCC-ChHHHHHHHH-HcCCCH
Confidence 467899999999997 458999999864 3566777765443 5754 55433211 1111 1112233333 34555
Q ss_pred CeEEEEeCCCC
Q 000897 1051 SAVVIIDDSVR 1061 (1234)
Q Consensus 1051 s~VVIVDDsp~ 1061 (1234)
+.+|+|+|++.
T Consensus 159 ~~~v~vgD~~~ 169 (185)
T TIGR01990 159 SECIGIEDAQA 169 (185)
T ss_pred HHeEEEecCHH
Confidence 78999999964
No 150
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=61.36 E-value=15 Score=40.47 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.1
Q ss_pred EEEEeCCCceeecc
Q 000897 922 CLVLDLDHTLLNSA 935 (1234)
Q Consensus 922 TLVLDLDETLIHSs 935 (1234)
.+++|||+||++..
T Consensus 3 ~~~~D~DGtl~~~~ 16 (249)
T TIGR01457 3 GYLIDLDGTMYKGK 16 (249)
T ss_pred EEEEeCCCceEcCC
Confidence 68999999999764
No 151
>PTZ00174 phosphomannomutase; Provisional
Probab=58.89 E-value=18 Score=39.61 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 000897 919 RKLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs 935 (1234)
+.+.+++||||||+++.
T Consensus 4 ~~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR 20 (247)
T ss_pred CCeEEEEECcCCCcCCC
Confidence 35679999999999875
No 152
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=58.88 E-value=12 Score=49.62 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=58.4
Q ss_pred ecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-Ce
Q 000897 975 LRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SA 1052 (1234)
Q Consensus 975 lRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~ 1052 (1234)
+.||+.+||++|.+ .|.+.|.|++.+.+++.+++.+.=...+|.. +++.+++.. .+++ +..+.+-++ .+|.. ..
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~-iv~~~~~~~-~KP~-Pe~~~~a~~-~lgv~p~e 237 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDA-IVSADAFEN-LKPA-PDIFLAAAK-ILGVPTSE 237 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCE-EEECccccc-CCCC-HHHHHHHHH-HcCcCccc
Confidence 57999999999965 6999999999999999999987643346764 665554421 2221 112333333 35555 77
Q ss_pred EEEEeCCCCcc
Q 000897 1053 VVIIDDSVRVW 1063 (1234)
Q Consensus 1053 VVIVDDsp~VW 1063 (1234)
+|+|+|++.-.
T Consensus 238 ~v~IgDs~~Di 248 (1057)
T PLN02919 238 CVVIEDALAGV 248 (1057)
T ss_pred EEEEcCCHHHH
Confidence 99999986433
No 153
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=58.65 E-value=29 Score=39.96 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=34.7
Q ss_pred cCCHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecC
Q 000897 976 RPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1234)
Q Consensus 976 RPGLdEFLeeLS-k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRD 1025 (1234)
=|+..+|++++. .-+.|++.|.-....-+.=++-|--.|--.-.+++=|.
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKD 197 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecC
Confidence 378899999985 57999999998877666666666555621223455564
No 154
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=58.29 E-value=15 Score=41.95 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcC-ceEEEEc
Q 000897 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 996 (1234)
Q Consensus 918 ~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~-YEIVIFT 996 (1234)
.+.-+..+|||+||++... .=||..+||+++.+. -.+++-|
T Consensus 6 ~~y~~~l~DlDGvl~~G~~--------------------------------------~ipga~e~l~~L~~~g~~~iflT 47 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNE--------------------------------------AIPGAAEALKRLKAAGKPVIFLT 47 (269)
T ss_pred hhcCEEEEcCcCceEeCCc--------------------------------------cCchHHHHHHHHHHcCCeEEEEe
Confidence 4556799999999998642 126788888888765 6777778
Q ss_pred CCcHHHHHHHHHHh
Q 000897 997 MGNKLYATEMAKVL 1010 (1234)
Q Consensus 997 AGtk~YAd~VLdiL 1010 (1234)
+++..-.+.+.+.|
T Consensus 48 Nn~~~s~~~~~~~L 61 (269)
T COG0647 48 NNSTRSREVVAARL 61 (269)
T ss_pred CCCCCCHHHHHHHH
Confidence 77655444443333
No 155
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=57.40 E-value=7.5 Score=42.36 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=38.0
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceEEEEcC
Q 000897 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTM 997 (1234)
Q Consensus 918 ~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEIVIFTA 997 (1234)
.||..|+||+|+||+-... +|. ..+.-|++.+.|++|++....+||=.
T Consensus 1 ~~~~~l~lD~DGTL~~~~~----~p~----------------------------~~~~~~~~~~~L~~L~~~~~~~v~iv 48 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVP----DPD----------------------------AAVVSDRLLTILQKLAARPHNAIWII 48 (244)
T ss_pred CCcEEEEEecCccccCCcC----CCc----------------------------ccCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 3678899999999995321 121 12345788999999998766543333
Q ss_pred CcHHHHHHHHHHhcC
Q 000897 998 GNKLYATEMAKVLDP 1012 (1234)
Q Consensus 998 Gtk~YAd~VLdiLDP 1012 (1234)
+.+.+. .+...+.+
T Consensus 49 SGR~~~-~~~~~~~~ 62 (244)
T TIGR00685 49 SGRKFL-EKWLGVKL 62 (244)
T ss_pred ECCChh-hccccCCC
Confidence 333443 33344443
No 156
>PLN02423 phosphomannomutase
Probab=57.23 E-value=19 Score=39.73 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.4
Q ss_pred CCeEEEEeCCCceeecc
Q 000897 919 RKLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs 935 (1234)
-|..+++||||||+...
T Consensus 6 ~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 6 PGVIALFDVDGTLTAPR 22 (245)
T ss_pred cceEEEEeccCCCcCCC
Confidence 45566799999999764
No 157
>PLN02151 trehalose-phosphatase
Probab=56.96 E-value=19 Score=42.59 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=46.9
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceEE
Q 000897 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 993 (1234)
Q Consensus 914 kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEIV 993 (1234)
.+...+++.|+||+|+||+--.. +|. -+..-|.+.+-|++|++.+.++
T Consensus 92 ~~~~~~~~ll~lDyDGTL~PIv~----~P~----------------------------~A~~~~~~~~aL~~La~~~~va 139 (354)
T PLN02151 92 HKSEGKQIVMFLDYDGTLSPIVD----DPD----------------------------RAFMSKKMRNTVRKLAKCFPTA 139 (354)
T ss_pred HhhcCCceEEEEecCccCCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhcCCCEE
Confidence 34567899999999999994221 121 2335688999999999999999
Q ss_pred EEcCCcHHHHHHHHH
Q 000897 994 LYTMGNKLYATEMAK 1008 (1234)
Q Consensus 994 IFTAGtk~YAd~VLd 1008 (1234)
|-|--...-...++.
T Consensus 140 IvSGR~~~~l~~~~~ 154 (354)
T PLN02151 140 IVSGRCREKVSSFVK 154 (354)
T ss_pred EEECCCHHHHHHHcC
Confidence 998887776666553
No 158
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=56.70 E-value=5.1 Score=42.37 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=26.1
Q ss_pred EEecCCHHHHHHHhhcCceEEEEcCCcHHH
Q 000897 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLY 1002 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~YEIVIFTAGtk~Y 1002 (1234)
...-||.++-+++|-+.|+|+|-|+++.-|
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp 96 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHP 96 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCc
Confidence 567799999999999999999999995544
No 159
>PLN02811 hydrolase
Probab=56.09 E-value=11 Score=40.11 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=55.3
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHH-HHHHhcCCCceeeeeeeecC--CCCCCCCCCCCCCccccCccccC
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATE-MAKVLDPKGVLFAGRVISRG--DDGDPFDGDERVPKSKDLEGVLG 1048 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~-VLdiLDP~g~LFs~RIySRD--dc~~~~dG~Er~~~iKDLsrVLG 1048 (1234)
+.+.||+.+||+.|.+ .|.+.|-|++.+.+... +.+...-. .+|.. +++.+ ++.. .+. ++..|.+=+.+ +|
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~-i~~~~~~~~~~-~KP-~p~~~~~a~~~-~~ 151 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHH-VVTGDDPEVKQ-GKP-APDIFLAAARR-FE 151 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCE-EEECChhhccC-CCC-CcHHHHHHHHH-hC
Confidence 5678999999999975 69999999999876654 33222111 25654 56555 3321 121 11123333432 33
Q ss_pred ---CC-CeEEEEeCCCCccccCcCCcc
Q 000897 1049 ---ME-SAVVIIDDSVRVWPHNKLNLI 1071 (1234)
Q Consensus 1049 ---rd-s~VVIVDDsp~VW~~qpdNgI 1071 (1234)
.. +.+|+|+|+..-...-...++
T Consensus 152 ~~~~~~~~~v~IgDs~~di~aA~~aG~ 178 (220)
T PLN02811 152 DGPVDPGKVLVFEDAPSGVEAAKNAGM 178 (220)
T ss_pred CCCCCccceEEEeccHhhHHHHHHCCC
Confidence 44 789999999854432233444
No 160
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.10 E-value=6.5 Score=48.09 Aligned_cols=70 Identities=24% Similarity=0.239 Sum_probs=41.9
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeecc---ceEEEEecCCHHHHHHHhhc-Cc
Q 000897 915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPH---MGMWTKLRPGIWTFLERASK-LF 990 (1234)
Q Consensus 915 LLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~---~~~yVklRPGLdEFLeeLSk-~Y 990 (1234)
+-...|++||||||+||.--.... |... -+++.. ...| =-+++|.+.+.+ -+
T Consensus 217 ~~g~~kK~LVLDLDNTLWGGVIGe--dGv~------------------GI~Ls~~~~G~~f----k~fQ~~Ik~l~kqGV 272 (574)
T COG3882 217 MSGKSKKALVLDLDNTLWGGVIGE--DGVD------------------GIRLSNSAEGEAF----KTFQNFIKGLKKQGV 272 (574)
T ss_pred hhCcccceEEEecCCccccccccc--cccc------------------ceeecCCCCchhH----HHHHHHHHHHHhccE
Confidence 346789999999999998765311 1100 011110 0000 014566667664 46
Q ss_pred eEEEEcCCcHHHHHHHHH
Q 000897 991 EMHLYTMGNKLYATEMAK 1008 (1234)
Q Consensus 991 EIVIFTAGtk~YAd~VLd 1008 (1234)
=+.|++..+..-|.+|..
T Consensus 273 lLav~SKN~~~da~evF~ 290 (574)
T COG3882 273 LLAVCSKNTEKDAKEVFR 290 (574)
T ss_pred EEEEecCCchhhHHHHHh
Confidence 678888888888887775
No 161
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=54.78 E-value=18 Score=37.47 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=41.1
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeee
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIy 1022 (1234)
..++|++.++|+.+.+ .+.++|.|++...|+..+++.+.-+. +|..++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 4689999999999865 58999999999999999999887654 6666554
No 162
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=54.40 E-value=16 Score=39.89 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCHHHHHHHhhcC-ceEEEEcCCc----HHHHHHHHHH
Q 000897 977 PGIWTFLERASKL-FEMHLYTMGN----KLYATEMAKV 1009 (1234)
Q Consensus 977 PGLdEFLeeLSk~-YEIVIFTAGt----k~YAd~VLdi 1009 (1234)
|+..++|+.+.+. +.+++.|+.+ ..|++.+.++
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~ 54 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSL 54 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4667778777653 7777777444 5566666553
No 163
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=53.99 E-value=21 Score=38.72 Aligned_cols=15 Identities=53% Similarity=0.786 Sum_probs=12.7
Q ss_pred CeEEEEeCCCceeec
Q 000897 920 KLCLVLDLDHTLLNS 934 (1234)
Q Consensus 920 KLTLVLDLDETLIHS 934 (1234)
++.++.|||+||+..
T Consensus 1 ~~li~tDlDGTLl~~ 15 (249)
T TIGR01485 1 RLLLVSDLDNTLVDH 15 (249)
T ss_pred CeEEEEcCCCcCcCC
Confidence 467899999999963
No 164
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=53.96 E-value=44 Score=36.34 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=51.1
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhh-cCceEEEEcC-
Q 000897 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM- 997 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLS-k~YEIVIFTA- 997 (1234)
.++|+||.||||+--.. +..+.+ . ...+.||+.+=|..+. ..|-++|+|+
T Consensus 5 ~k~lflDRDGtin~d~~-----~yv~~~--------------~---------~~~~~~g~i~al~~l~~~gy~lVvvTNQ 56 (181)
T COG0241 5 QKALFLDRDGTINIDKG-----DYVDSL--------------D---------DFQFIPGVIPALLKLQRAGYKLVVVTNQ 56 (181)
T ss_pred CcEEEEcCCCceecCCC-----cccCcH--------------H---------HhccCccHHHHHHHHHhCCCeEEEEECC
Confidence 67899999999995321 000000 0 1347899999999985 5699999999
Q ss_pred ---CcHH--------HHHHHHHHhcCCCceeeeeeeec
Q 000897 998 ---GNKL--------YATEMAKVLDPKGVLFAGRVISR 1024 (1234)
Q Consensus 998 ---Gtk~--------YAd~VLdiLDP~g~LFs~RIySR 1024 (1234)
++.. +-+.|+..|--.|.-|.+.+|+.
T Consensus 57 sGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cp 94 (181)
T COG0241 57 SGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCP 94 (181)
T ss_pred CCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECC
Confidence 3333 33346666766776777766654
No 165
>PLN02887 hydrolase family protein
Probab=53.78 E-value=21 Score=44.59 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=39.1
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhh-cCceEE
Q 000897 915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMH 993 (1234)
Q Consensus 915 LLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLS-k~YEIV 993 (1234)
.+..+-+.+++||||||++... .+++ ...+-|+++. +-+.++
T Consensus 303 ~~~~~iKLIa~DLDGTLLn~d~--~Is~-----------------------------------~t~eAI~kl~ekGi~~v 345 (580)
T PLN02887 303 FYKPKFSYIFCDMDGTLLNSKS--QISE-----------------------------------TNAKALKEALSRGVKVV 345 (580)
T ss_pred hhccCccEEEEeCCCCCCCCCC--ccCH-----------------------------------HHHHHHHHHHHCCCeEE
Confidence 3455667899999999997642 1222 1223455544 347777
Q ss_pred EEcCCcHHHHHHHHHHhcC
Q 000897 994 LYTMGNKLYATEMAKVLDP 1012 (1234)
Q Consensus 994 IFTAGtk~YAd~VLdiLDP 1012 (1234)
|-|.-...-+..+++.|+.
T Consensus 346 IATGR~~~~i~~~l~~L~l 364 (580)
T PLN02887 346 IATGKARPAVIDILKMVDL 364 (580)
T ss_pred EEcCCCHHHHHHHHHHhCc
Confidence 7777777777777776654
No 166
>PLN02580 trehalose-phosphatase
Probab=49.70 E-value=26 Score=41.87 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=48.0
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCceEE
Q 000897 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 993 (1234)
Q Consensus 914 kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YEIV 993 (1234)
...+.+++.|+||.|+||.--.. +|. -+..-|.+.+-|++|++.+-++
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~----~Pd----------------------------~A~~s~~~~~aL~~La~~~~VA 160 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVD----DPD----------------------------RALMSDAMRSAVKNVAKYFPTA 160 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhhCCCEE
Confidence 34567899999999999984321 221 1335588999999999999999
Q ss_pred EEcCCcHHHHHHHHH
Q 000897 994 LYTMGNKLYATEMAK 1008 (1234)
Q Consensus 994 IFTAGtk~YAd~VLd 1008 (1234)
|-|--...-.+..+.
T Consensus 161 IVSGR~~~~L~~~l~ 175 (384)
T PLN02580 161 IISGRSRDKVYELVG 175 (384)
T ss_pred EEeCCCHHHHHHHhC
Confidence 999888877766664
No 167
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=48.37 E-value=19 Score=41.63 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=36.9
Q ss_pred EEEecCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhcCC
Q 000897 972 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 1013 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLDP~ 1013 (1234)
.+.++||+.+||+++.+. |.+.|.|.|...|++.+++.|+-.
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld 221 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD 221 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC
Confidence 367899999999999864 899999999999999999987654
No 168
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=48.22 E-value=34 Score=43.82 Aligned_cols=59 Identities=19% Similarity=0.073 Sum_probs=39.9
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-CceEEEEc
Q 000897 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT 996 (1234)
Q Consensus 918 ~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YEIVIFT 996 (1234)
.+++.+++|||+||++.... .. +...+-|+++.+ ...++|.|
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~--i~-----------------------------------~~t~eAL~~L~ekGI~~VIAT 456 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTY--SY-----------------------------------STALDALRLLKDKELPLVFCS 456 (694)
T ss_pred ceeeEEEEECcCCCcCCCCc--cC-----------------------------------HHHHHHHHHHHHcCCeEEEEe
Confidence 56778999999999986421 00 012334555554 47888888
Q ss_pred CCcHHHHHHHHHHhcCC
Q 000897 997 MGNKLYATEMAKVLDPK 1013 (1234)
Q Consensus 997 AGtk~YAd~VLdiLDP~ 1013 (1234)
.-+..++..+++.|+..
T Consensus 457 GRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 457 AKTMGEQDLYRNELGIK 473 (694)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 88888888888877643
No 169
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=47.70 E-value=37 Score=39.58 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCC
Q 000897 980 WTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPK 1013 (1234)
Q Consensus 980 dEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~ 1013 (1234)
.+-|++|.+ -..|++.|.-+..=...+.+.|.-+
T Consensus 24 ~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 24 RQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 344566554 4677777776666666666666543
No 170
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=46.09 E-value=11 Score=38.28 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=26.2
Q ss_pred CCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCCcEEc
Q 000897 1161 NPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVH 1211 (1234)
Q Consensus 1161 nPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GIkIVS 1211 (1234)
.|+...+...++.+|.. -.|.|.-.-...=+..|.+.|+++|.
T Consensus 142 KP~p~~~~~~~~~~~~~--------~~~~l~igDs~~di~aA~~aG~~~i~ 184 (188)
T PRK10725 142 KPAPDTFLRCAQLMGVQ--------PTQCVVFEDADFGIQAARAAGMDAVD 184 (188)
T ss_pred CCChHHHHHHHHHcCCC--------HHHeEEEeccHhhHHHHHHCCCEEEe
Confidence 45556677778888742 23334433334457778888887764
No 171
>PTZ00445 p36-lilke protein; Provisional
Probab=45.99 E-value=28 Score=38.91 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=45.5
Q ss_pred hhcCCCeEEEEeCCCceee--cccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc-Cce
Q 000897 915 MFSARKLCLVLDLDHTLLN--SAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFE 991 (1234)
Q Consensus 915 LLs~KKLTLVLDLDETLIH--Ss~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk-~YE 991 (1234)
|...+=+.+++|||.|||- |... .+|.. | ...+.-..||.+..++++|.+ .+.
T Consensus 38 L~~~GIk~Va~D~DnTlI~~HsgG~--~~~~~----------~------------~~~~~~~~tpefk~~~~~l~~~~I~ 93 (219)
T PTZ00445 38 LNECGIKVIASDFDLTMITKHSGGY--IDPDN----------D------------DIRVLTSVTPDFKILGKRLKNSNIK 93 (219)
T ss_pred HHHcCCeEEEecchhhhhhhhcccc--cCCCc----------c------------hhhhhccCCHHHHHHHHHHHHCCCe
Confidence 4557788899999999984 4321 12210 0 012345689999999999975 799
Q ss_pred EEEEcCCcHHH
Q 000897 992 MHLYTMGNKLY 1002 (1234)
Q Consensus 992 IVIFTAGtk~Y 1002 (1234)
|+|-|-+.+.-
T Consensus 94 v~VVTfSd~~~ 104 (219)
T PTZ00445 94 ISVVTFSDKEL 104 (219)
T ss_pred EEEEEccchhh
Confidence 99999998865
No 172
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=45.93 E-value=11 Score=39.19 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 000897 922 CLVLDLDHTLLNSA 935 (1234)
Q Consensus 922 TLVLDLDETLIHSs 935 (1234)
.+++|||||||.|.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 47999999999986
No 173
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=45.92 E-value=15 Score=41.04 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=17.3
Q ss_pred HHhhhcCCCeEEEEeCCCceeecc
Q 000897 912 QKKMFSARKLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 912 Q~kLLs~KKLTLVLDLDETLIHSs 935 (1234)
|++ +...-+.+|+|||||||.|.
T Consensus 17 ~~~-~~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 17 QHR-LGCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred HHH-hcCCceEEEEeCCCceeCCc
Confidence 444 34556669999999999984
No 174
>PHA02597 30.2 hypothetical protein; Provisional
Probab=45.39 E-value=12 Score=38.74 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=26.6
Q ss_pred chHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhc--CCcEEcHHHHHH
Q 000897 1165 HPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALST--GRFVVHPGWVEA 1217 (1234)
Q Consensus 1165 ~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~--GIkIVSPdWLed 1217 (1234)
..+...++.+|. .+.|.-.-...=+..|++. |++.|+..|-..
T Consensus 134 ~~~~~a~~~~~~----------~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 134 KLFIKAKEKYGD----------RVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred HHHHHHHHHhCC----------CcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh
Confidence 455566777871 2233333222337778887 999998888754
No 175
>PRK11590 hypothetical protein; Provisional
Probab=44.81 E-value=12 Score=39.74 Aligned_cols=39 Identities=10% Similarity=-0.107 Sum_probs=34.0
Q ss_pred EEecCCHHHHH-HHhh-cCceEEEEcCCcHHHHHHHHHHhc
Q 000897 973 TKLRPGIWTFL-ERAS-KLFEMHLYTMGNKLYATEMAKVLD 1011 (1234)
Q Consensus 973 VklRPGLdEFL-eeLS-k~YEIVIFTAGtk~YAd~VLdiLD 1011 (1234)
+..+||+.+.| +.+. ..+.++|-|++...|+.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 46799999999 5676 589999999999999999998755
No 176
>PRK11587 putative phosphatase; Provisional
Probab=44.55 E-value=12 Score=39.75 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.9
Q ss_pred CeEEEEeCCCceeecc
Q 000897 920 KLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1234)
...+++||||||+.|.
T Consensus 3 ~k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 3 CKGFLFDLDGTLVDSL 18 (218)
T ss_pred CCEEEEcCCCCcCcCH
Confidence 3579999999999986
No 177
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=44.10 E-value=54 Score=37.54 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=48.2
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhcCce--
Q 000897 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE-- 991 (1234)
Q Consensus 914 kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk~YE-- 991 (1234)
..+..+|..++||.|+||++-..+ |.. ...=+++.+-|..|+..+.
T Consensus 12 ~~~~a~~~~~~lDyDGTl~~i~~~----p~~----------------------------a~~~~~l~~lL~~Las~~~~~ 59 (266)
T COG1877 12 PYLNARKRLLFLDYDGTLTEIVPH----PEA----------------------------AVPDDRLLSLLQDLASDPRNV 59 (266)
T ss_pred ccccccceEEEEeccccccccccC----ccc----------------------------cCCCHHHHHHHHHHHhcCCCe
Confidence 456789999999999999987642 210 1234678889999999998
Q ss_pred EEEEcCCcHHHHHHHHH
Q 000897 992 MHLYTMGNKLYATEMAK 1008 (1234)
Q Consensus 992 IVIFTAGtk~YAd~VLd 1008 (1234)
++|.|.-...-.+..+.
T Consensus 60 v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 60 VAIISGRSLAELERLFG 76 (266)
T ss_pred EEEEeCCCHHHHHHhcC
Confidence 88888888877776666
No 178
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=43.64 E-value=14 Score=38.78 Aligned_cols=79 Identities=23% Similarity=0.189 Sum_probs=42.5
Q ss_pred EEecCCHHHHHHHhhcC-ceEEEEcCCcHH-H---HHHHHHHhcCC-CceeeeeeeecCCCCCCCCCCCCCCccccCccc
Q 000897 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKL-Y---ATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGV 1046 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~-YEIVIFTAGtk~-Y---Ad~VLdiLDP~-g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrV 1046 (1234)
...=||+.+.|++|.+. |++++.|+.... | +..=.+.|+-. +.++.++++--. -|.+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~--------------~K~~--- 134 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG--------------DKTL--- 134 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES--------------SGGG---
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec--------------CCCe---
Confidence 56779999999999987 477777776654 2 33334555533 122323333211 1332
Q ss_pred cCCCCeEEEEeCCCCccccCcCCcc
Q 000897 1047 LGMESAVVIIDDSVRVWPHNKLNLI 1071 (1234)
Q Consensus 1047 LGrds~VVIVDDsp~VW~~qpdNgI 1071 (1234)
++.+ |+|||++.....-...++
T Consensus 135 v~~D---vlIDD~~~n~~~~~~~g~ 156 (191)
T PF06941_consen 135 VGGD---VLIDDRPHNLEQFANAGI 156 (191)
T ss_dssp C--S---EEEESSSHHHSS-SSESS
T ss_pred Eecc---EEecCChHHHHhccCCCc
Confidence 2333 889999987654444453
No 179
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=41.93 E-value=14 Score=38.62 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
..+++|||+||+.+.
T Consensus 3 ~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 3 KAIFFDLDDTLIDTS 17 (221)
T ss_pred eEEEEeCCCCCcCCC
Confidence 478999999999986
No 180
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=41.45 E-value=14 Score=38.69 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 000897 920 KLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1234)
...+++|||+||+++.
T Consensus 3 ~~~viFD~DGTL~ds~ 18 (214)
T PRK13288 3 INTVLFDLDGTLINTN 18 (214)
T ss_pred ccEEEEeCCCcCccCH
Confidence 3578999999999986
No 181
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=41.25 E-value=14 Score=37.98 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 000897 922 CLVLDLDHTLLNSA 935 (1234)
Q Consensus 922 TLVLDLDETLIHSs 935 (1234)
.+++|||+||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999875
No 182
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=41.10 E-value=47 Score=36.26 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=42.9
Q ss_pred EEEecCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhcCCCceeeeeee
Q 000897 972 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1234)
Q Consensus 972 yVklRPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIy 1022 (1234)
++.++||..+.++.+.+. +.++|.|+|-..|+++|.+.|.-+. .+.+++.
T Consensus 75 ~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~ 125 (212)
T COG0560 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELE 125 (212)
T ss_pred cCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEE
Confidence 389999999999999865 9999999999999999999998764 4555443
No 183
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=41.08 E-value=16 Score=38.37 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
.++++|||+||+.+.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 468999999999986
No 184
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=38.46 E-value=98 Score=36.39 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=49.5
Q ss_pred CchhhHHHHHHHHhhhccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCCccEEEeCCCCCHHHHHHHhcCC
Q 000897 1128 DDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGR 1207 (1234)
Q Consensus 1128 ~~~DVR~ILkeiQ~kILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~kVTHLVAt~~gT~KVr~Akk~GI 1207 (1234)
...+++.++..++...=++-.++++|-+|.+........+.+++++.|+.+.-|.+ ++....+++.+.
T Consensus 112 s~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S------------g~~L~~~L~~~P 179 (310)
T COG1105 112 SEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS------------GEALLAALEAKP 179 (310)
T ss_pred CHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC------------hHHHHHHHccCC
Confidence 34566666666666666667789999999876433345677888999998877654 344455555555
Q ss_pred cEEcH
Q 000897 1208 FVVHP 1212 (1234)
Q Consensus 1208 kIVSP 1212 (1234)
++|.|
T Consensus 180 ~lIKP 184 (310)
T COG1105 180 WLIKP 184 (310)
T ss_pred cEEec
Confidence 66655
No 185
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=38.20 E-value=16 Score=40.69 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 000897 920 KLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1234)
.+.+++|||+||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3489999999999985
No 186
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=37.90 E-value=19 Score=37.35 Aligned_cols=14 Identities=29% Similarity=0.244 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 000897 922 CLVLDLDHTLLNSA 935 (1234)
Q Consensus 922 TLVLDLDETLIHSs 935 (1234)
.+++|||+||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999875
No 187
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=36.44 E-value=18 Score=35.22 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhccccC---CCCchhhHHHHHHHHhh-hccCceeeeeccccCCCCCCCCchHHHHHHHhCCEEecccCCC
Q 000897 1110 SLGVIERLHKIFFSHQ---SLDDVDVRNILAAEQRK-ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQ 1185 (1234)
Q Consensus 1110 LL~fLekIHq~FFs~~---~L~~~DVR~ILkeiQ~k-ILkGCvIvFSGvfP~~~dnPer~~LwkLAesLGAtVssdId~k 1185 (1234)
+.++|.++.+.-+.-. +.....++.+++.+.-. .|. .|+.+.-... ..|+...+..+++.+|. .+.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~--~i~~~~~~~~--~Kp~~~~~~~~~~~~~~------~p~ 151 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFD--EIISSDDVGS--RKPDPDAYRRALEKLGI------PPE 151 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCS--EEEEGGGSSS--STTSHHHHHHHHHHHTS------SGG
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccccccc--cccccchhhh--hhhHHHHHHHHHHHcCC------Ccc
Confidence 4455666653322211 12234455566554333 233 2233332222 24444556667777753 232
Q ss_pred ccEEEeCCCCCHHHHHHHhcCCcEEc
Q 000897 1186 VTHVVANSLGTDKVNWALSTGRFVVH 1211 (1234)
Q Consensus 1186 VTHLVAt~~gT~KVr~Akk~GIkIVS 1211 (1234)
-+.+|-... .-+..|++.|++.|.
T Consensus 152 ~~~~vgD~~--~d~~~A~~~G~~~i~ 175 (176)
T PF13419_consen 152 EILFVGDSP--SDVEAAKEAGIKTIW 175 (176)
T ss_dssp GEEEEESSH--HHHHHHHHTTSEEEE
T ss_pred eEEEEeCCH--HHHHHHHHcCCeEEe
Confidence 233333332 556777888877653
No 188
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=36.25 E-value=31 Score=45.27 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=43.2
Q ss_pred chHHHHHHHhCCEEecccC------------CCccEEEeCCCCCHHHHHHHhcCCcEEcHHHHHHHHHhccCCC
Q 000897 1165 HPLWQTAEQFGAVCTKHID------------DQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRAN 1226 (1234)
Q Consensus 1165 ~~LwkLAesLGAtVssdId------------~kVTHLVAt~~gT~KVr~Akk~GIkIVSPdWLedClk~wkRVD 1226 (1234)
-.+|.-+.+.|+.-.-++. .-.-||++...++.-.++|-..++++|+++||.+|+-..++..
T Consensus 1086 ~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~i~ 1159 (1176)
T KOG3548|consen 1086 IEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTLGAPVVSSEWVIQTIILGKAIE 1159 (1176)
T ss_pred HHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHhCCCccChhHhheeeeccccCC
Confidence 3677667777765544441 1234666666666666777788999999999999998766553
No 189
>PRK11590 hypothetical protein; Provisional
Probab=36.21 E-value=46 Score=35.50 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.6
Q ss_pred CCCeEEEEeCCCceeecc
Q 000897 918 ARKLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 918 ~KKLTLVLDLDETLIHSs 935 (1234)
..+..+++|||+||++..
T Consensus 4 ~~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 4 HERRVVFFDLDGTLHQQD 21 (211)
T ss_pred ccceEEEEecCCCCcccc
Confidence 356689999999999554
No 190
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=36.18 E-value=18 Score=36.65 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
..+++|||+||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 468999999999986
No 191
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=36.18 E-value=17 Score=38.98 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
..+|+|||+||+.|.
T Consensus 13 k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 13 RAVLFDLDGTLLDSA 27 (229)
T ss_pred CEEEEcCcCccccCH
Confidence 479999999999986
No 192
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=36.17 E-value=35 Score=40.24 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=38.1
Q ss_pred eEEEEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHh-c
Q 000897 970 GMWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL-D 1011 (1234)
Q Consensus 970 ~~yVklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiL-D 1011 (1234)
.-||.+-|++.++|++|.+ ...+.|-|++...|++.+++.+ +
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 3588899999999999976 4899999999999999999986 6
No 193
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=35.33 E-value=16 Score=36.18 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 000897 922 CLVLDLDHTLLNSA 935 (1234)
Q Consensus 922 TLVLDLDETLIHSs 935 (1234)
++++|+|+||+.+.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47999999999985
No 194
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=35.22 E-value=21 Score=39.12 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
.++++|||+|||.+.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 589999999999974
No 195
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=34.36 E-value=99 Score=37.60 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=63.2
Q ss_pred CCCCCcccccchhhcccchhHHHHhhHHHHhhhHHH-HhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccc
Q 000897 877 AHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQ-KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQD 955 (1234)
Q Consensus 877 ~~pq~~~~~fd~L~~g~~~~q~a~i~re~akrL~~Q-~kLLs~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D 955 (1234)
.-.|.++..|++.+..-...+ + .+.+... ..-+......+|||||.|..-.....+. . .++.....+
T Consensus 102 Las~~t~sR~e~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~i~LDiD~T~~~~~G~Qe~----~-~~n~y~g~~ 169 (448)
T PF13701_consen 102 LASQPTLSRLENRPDERDLKR---L----RRALVDLFLASYKKPPKEIVLDIDSTVDDVHGEQEG----A-VFNTYYGED 169 (448)
T ss_pred ccchhhHHHHHccccHHHHHH---H----HHHHHHHHHHHhccccceEEEecccccccchhhccc----c-cccccCCCc
Confidence 344667777776665422111 1 1122221 1123456688999999998543321110 0 000000011
Q ss_pred cCCCcceeeee---ccceEEEEecCC-------HHHHHHHhhcC----c-eE-EEEcCCcHHHHHHHHHHhcCCCcee
Q 000897 956 REKPHRHLFRF---PHMGMWTKLRPG-------IWTFLERASKL----F-EM-HLYTMGNKLYATEMAKVLDPKGVLF 1017 (1234)
Q Consensus 956 ~~~P~~~lF~~---~~~~~yVklRPG-------LdEFLeeLSk~----Y-EI-VIFTAGtk~YAd~VLdiLDP~g~LF 1017 (1234)
...| ++-+ .+.-+-..+||| ..+||+++-+. + +. +++=+-+--|...+++.++-++..|
T Consensus 170 gY~P---L~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~~~~~~~ILvR~DSgF~~~el~~~ce~~g~~y 244 (448)
T PF13701_consen 170 GYHP---LVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQRWPDTRILVRGDSGFASPELMDWCEAEGVDY 244 (448)
T ss_pred cccc---ceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhhhCccceEEEEecCccCcHHHHHHHHhCCCeE
Confidence 1112 2222 223455789998 56777775432 2 33 4455555556677999998877544
No 196
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=34.19 E-value=22 Score=37.31 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=14.3
Q ss_pred CCeEEEEeCCCceeecc
Q 000897 919 RKLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs 935 (1234)
+++.+++|+|+||+++.
T Consensus 13 ~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAE 29 (219)
T ss_pred cCCEEEEeCcccCCCch
Confidence 45589999999999874
No 197
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=34.08 E-value=20 Score=35.95 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=12.3
Q ss_pred EEEEeCCCceeecc
Q 000897 922 CLVLDLDHTLLNSA 935 (1234)
Q Consensus 922 TLVLDLDETLIHSs 935 (1234)
.+++|||+|||.+.
T Consensus 1 ~vlFDlDgtLv~~~ 14 (183)
T TIGR01509 1 AILFDLDGVLVDTS 14 (183)
T ss_pred CeeeccCCceechH
Confidence 37999999999985
No 198
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=33.85 E-value=83 Score=33.85 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=56.8
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd- 1050 (1234)
...-||+.+.|..+.+ .|.+.|.|+.....++.+++.++-.. +|.. ++.-+++. ..+++ +.....-+. -+|.+
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~-i~g~~~~~-~~KP~-P~~l~~~~~-~~~~~~ 162 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDV-IVGGDDVP-PPKPD-PEPLLLLLE-KLGLDP 162 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccce-EEcCCCCC-CCCcC-HHHHHHHHH-HhCCCh
Confidence 5678999999999985 58999999999999999999988765 7764 45422221 11111 001111111 23444
Q ss_pred CeEEEEeCCCCcc
Q 000897 1051 SAVVIIDDSVRVW 1063 (1234)
Q Consensus 1051 s~VVIVDDsp~VW 1063 (1234)
..+|+|-|+..=-
T Consensus 163 ~~~l~VGDs~~Di 175 (220)
T COG0546 163 EEALMVGDSLNDI 175 (220)
T ss_pred hheEEECCCHHHH
Confidence 5799999987543
No 199
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=33.56 E-value=19 Score=36.42 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 000897 922 CLVLDLDHTLLNSA 935 (1234)
Q Consensus 922 TLVLDLDETLIHSs 935 (1234)
.+|+|+|+||+.+.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 37999999999886
No 200
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=33.52 E-value=83 Score=32.23 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=38.3
Q ss_pred EEEEecCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhcCC
Q 000897 971 MWTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 1013 (1234)
Q Consensus 971 ~yVklRPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLDP~ 1013 (1234)
..-.+||++.++|++|.+. +.++|.|......|..+++.+.-.
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 3457899999999999986 899999999999999999998753
No 201
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=33.45 E-value=20 Score=39.11 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
..+++|||+||+.|.
T Consensus 23 k~viFDlDGTLiDs~ 37 (248)
T PLN02770 23 EAVLFDVDGTLCDSD 37 (248)
T ss_pred CEEEEcCCCccCcCH
Confidence 479999999999986
No 202
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=32.79 E-value=27 Score=37.82 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
..+++|||+|||.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 479999999999974
No 203
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=32.19 E-value=46 Score=33.73 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.4
Q ss_pred ecCCHH----HHHHHh-hcCceEEEEcCCcHHHHHHHHHHhcCCC-ceeeeee
Q 000897 975 LRPGIW----TFLERA-SKLFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRV 1021 (1234)
Q Consensus 975 lRPGLd----EFLeeL-Sk~YEIVIFTAGtk~YAd~VLdiLDP~g-~LFs~RI 1021 (1234)
++|++. +||+++ ...++++|-|++...|+..+++.+.-.. .++..++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 456666 999997 5789999999999999999998766432 2344444
No 204
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=31.87 E-value=23 Score=36.84 Aligned_cols=93 Identities=11% Similarity=-0.054 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhccccC---CCCchhhHHHHHHHHhh-hccCceeeeeccccCCCCCCCCchHHHHHHHh-CCEEecccCC
Q 000897 1110 SLGVIERLHKIFFSHQ---SLDDVDVRNILAAEQRK-ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQF-GAVCTKHIDD 1184 (1234)
Q Consensus 1110 LL~fLekIHq~FFs~~---~L~~~DVR~ILkeiQ~k-ILkGCvIvFSGvfP~~~dnPer~~LwkLAesL-GAtVssdId~ 1184 (1234)
+..+|+.++.. +.-. +-....++.+|+...-. .|. ++++ ++-.. ...|+...+...++.+ |..
T Consensus 102 ~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd-~i~~-~~~~~--~~KP~~~~~~~~~~~~~~~~------- 169 (224)
T TIGR02254 102 AFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFD-DIFV-SEDAG--IQKPDKEIFNYALERMPKFS------- 169 (224)
T ss_pred HHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcC-EEEE-cCccC--CCCCCHHHHHHHHHHhcCCC-------
Confidence 45566666665 4322 11234455555544322 243 2222 22221 1234444555667777 533
Q ss_pred CccEEEeCCCCC-HHHHHHHhcCCcEEcHHHH
Q 000897 1185 QVTHVVANSLGT-DKVNWALSTGRFVVHPGWV 1215 (1234)
Q Consensus 1185 kVTHLVAt~~gT-~KVr~Akk~GIkIVSPdWL 1215 (1234)
..+.|.-.... .=+..|++.|+..|...|-
T Consensus 170 -~~~~v~igD~~~~di~~A~~~G~~~i~~~~~ 200 (224)
T TIGR02254 170 -KEEVLMIGDSLTADIKGGQNAGLDTCWMNPD 200 (224)
T ss_pred -chheEEECCCcHHHHHHHHHCCCcEEEECCC
Confidence 12333333332 4577788889877766663
No 205
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=31.86 E-value=23 Score=36.67 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 000897 922 CLVLDLDHTLLNSA 935 (1234)
Q Consensus 922 TLVLDLDETLIHSs 935 (1234)
.+++|||+|||.+.
T Consensus 3 ~viFD~dgTLiD~~ 16 (198)
T TIGR01428 3 ALVFDVYGTLFDVH 16 (198)
T ss_pred EEEEeCCCcCccHH
Confidence 68999999999875
No 206
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=31.75 E-value=79 Score=39.22 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=36.0
Q ss_pred EEecCCHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhcC
Q 000897 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDP 1012 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk-~YEIVIFTAGtk~YAd~VLdiLDP 1012 (1234)
..+||++.++|++|.+ .+.++|.|...+.+|+.+++.+.-
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 3589999999999986 599999999999999999998754
No 207
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=31.66 E-value=28 Score=36.37 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
.++|+|||+||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 379999999999874
No 208
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=31.58 E-value=27 Score=37.54 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.1
Q ss_pred CCeEEEEeCCCceeeccc
Q 000897 919 RKLCLVLDLDHTLLNSAK 936 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs~ 936 (1234)
...++++|||+||+.+..
T Consensus 3 ~~~~iiFDlDGTL~Ds~~ 20 (220)
T COG0546 3 MIKAILFDLDGTLVDSAE 20 (220)
T ss_pred CCCEEEEeCCCccccChH
Confidence 356899999999999863
No 209
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=31.52 E-value=27 Score=35.26 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.1
Q ss_pred CeEEEEeCCCceeecc
Q 000897 920 KLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1234)
|..+|+|+|+||+...
T Consensus 1 ~~~iiFD~dgTL~~~~ 16 (188)
T TIGR01489 1 KVVVVSDFDGTITLND 16 (188)
T ss_pred CeEEEEeCCCcccCCC
Confidence 6789999999999864
No 210
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=31.41 E-value=83 Score=35.07 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=35.1
Q ss_pred EEecCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhc
Q 000897 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 1011 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLD 1011 (1234)
+++|||.++|.+++.++ -.++|-++|+..|..+++..|=
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 88999999999999865 7799999999999999998654
No 211
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=31.21 E-value=19 Score=37.61 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=11.8
Q ss_pred EEEeCCCceeecc
Q 000897 923 LVLDLDHTLLNSA 935 (1234)
Q Consensus 923 LVLDLDETLIHSs 935 (1234)
+|+|||+||+.|.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999986
No 212
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=30.67 E-value=23 Score=39.81 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=14.2
Q ss_pred CeEEEEeCCCceeecc
Q 000897 920 KLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1234)
-..+++|||+||+.|.
T Consensus 62 ~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 62 LQAIIFDFDGTLVDSL 77 (273)
T ss_pred cCEEEECCcCccccCH
Confidence 4579999999999986
No 213
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=30.66 E-value=24 Score=38.24 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=48.1
Q ss_pred EEecCCHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-C
Q 000897 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1234)
Q Consensus 973 VklRPGLdEFLeeLSk~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s 1051 (1234)
+..-||+.++|++|.+.|.++|.|++... ++.+.= ..+|.. +++-++.. ..++. +..+.+=+. .+|.+ +
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl-~~~fd~-i~~~~~~~-~~KP~-p~~~~~a~~-~~~~~~~ 181 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGL-GDYFEF-VLRAGPHG-RSKPF-SDMYHLAAE-KLNVPIG 181 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCc-HHhhce-eEecccCC-cCCCc-HHHHHHHHH-HcCCChh
Confidence 45568999999999988999999998865 222222 235654 55433221 11211 112223333 34655 7
Q ss_pred eEEEEeCCC--Cccc
Q 000897 1052 AVVIIDDSV--RVWP 1064 (1234)
Q Consensus 1052 ~VVIVDDsp--~VW~ 1064 (1234)
.+|+|.|++ ++-.
T Consensus 182 ~~~~VGD~~~~Di~~ 196 (238)
T PRK10748 182 EILHVGDDLTTDVAG 196 (238)
T ss_pred HEEEEcCCcHHHHHH
Confidence 899998874 4543
No 214
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=30.25 E-value=66 Score=34.86 Aligned_cols=37 Identities=11% Similarity=-0.095 Sum_probs=33.1
Q ss_pred EEecCCHHHHHH-Hhh-cCceEEEEcCCcHHHHHHHHHH
Q 000897 973 TKLRPGIWTFLE-RAS-KLFEMHLYTMGNKLYATEMAKV 1009 (1234)
Q Consensus 973 VklRPGLdEFLe-eLS-k~YEIVIFTAGtk~YAd~VLdi 1009 (1234)
+.++|++.+.|+ .+. +-+.++|-|++...|++++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 367999999996 777 5899999999999999999976
No 215
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=30.05 E-value=26 Score=36.60 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 000897 920 KLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1234)
-..+++|+|+||+++.
T Consensus 6 ~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 6 IRAVAFDLDGTLVDSA 21 (226)
T ss_pred CcEEEEcCCcccccCH
Confidence 3479999999999875
No 216
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=29.76 E-value=21 Score=37.08 Aligned_cols=13 Identities=54% Similarity=0.838 Sum_probs=11.5
Q ss_pred EEEeCCCceeecc
Q 000897 923 LVLDLDHTLLNSA 935 (1234)
Q Consensus 923 LVLDLDETLIHSs 935 (1234)
+|+|||+||+.|.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999875
No 217
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=29.65 E-value=30 Score=35.40 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.9
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
.++|+|||+||+.+.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 479999999999864
No 218
>PRK09449 dUMP phosphatase; Provisional
Probab=29.57 E-value=25 Score=37.04 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=12.2
Q ss_pred eEEEEeCCCceeec
Q 000897 921 LCLVLDLDHTLLNS 934 (1234)
Q Consensus 921 LTLVLDLDETLIHS 934 (1234)
.++++|||+||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 47999999999973
No 219
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=29.49 E-value=83 Score=40.13 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=42.9
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEecCCHHHHHHHhhc--CceEEE
Q 000897 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHL 994 (1234)
Q Consensus 917 s~KKLTLVLDLDETLIHSs~~~elDP~~~Eil~~kEe~D~~~P~~~lF~~~~~~~yVklRPGLdEFLeeLSk--~YEIVI 994 (1234)
..++..|++|+|+||+-... +|. .....|.+.+.|++|.+ ...|+|
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~----~~~----------------------------~~~~~~~~~~~L~~L~~d~g~~V~i 536 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAP----DPE----------------------------LAVPDKELRDLLRRLAADPNTDVAI 536 (726)
T ss_pred hccceEEEEecCccccCCCC----Ccc----------------------------cCCCCHHHHHHHHHHHcCCCCeEEE
Confidence 45678999999999995421 110 01134678889999987 688889
Q ss_pred EcCCcHHHHHHHHHH
Q 000897 995 YTMGNKLYATEMAKV 1009 (1234)
Q Consensus 995 FTAGtk~YAd~VLdi 1009 (1234)
.|.-.......++..
T Consensus 537 vSGR~~~~l~~~~~~ 551 (726)
T PRK14501 537 ISGRDRDTLERWFGD 551 (726)
T ss_pred EeCCCHHHHHHHhCC
Confidence 988887777666543
No 220
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=29.33 E-value=29 Score=36.73 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.5
Q ss_pred CCeEEEEeCCCceeecc
Q 000897 919 RKLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs 935 (1234)
+-..+++|+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 45678999999999885
No 221
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=28.04 E-value=27 Score=35.23 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=11.7
Q ss_pred EEEeCCCceeecc
Q 000897 923 LVLDLDHTLLNSA 935 (1234)
Q Consensus 923 LVLDLDETLIHSs 935 (1234)
+++|||+|||.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999875
No 222
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=27.67 E-value=30 Score=45.01 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=38.0
Q ss_pred cccchhHHhhhhHHHHHHHHHHhhcCCCCcchhHHHHHHHhhhheeeeeeeccChhhhhhhHHHHHHHHHHhhccCCCCC
Q 000897 188 RGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLF 267 (1234)
Q Consensus 188 ~~~~sf~~~c~~~~~~~~~l~~~~~~~~~~~~d~l~~~~~~~~~~~~~v~~s~~~~~~~~nk~~~~~~~~~~~~~~~~~~ 267 (1234)
..+.-|.=.|-.-+. .|.+++.+......-.+|+ -|.+. +.-...+.||..|.+|+.+|-.|+-.+.
T Consensus 415 ~~elPftf~~P~s~e---el~~lL~~~~~~~~~~iI~----RIrk~------~hpsLa~~NK~Kl~~f~~vLlq~i~~la 481 (840)
T PF04147_consen 415 KSELPFTFPCPSSHE---ELLELLDGYSPEDQPTIIQ----RIRKC------YHPSLAEGNKEKLQVFFGVLLQHILYLA 481 (840)
T ss_pred ccCCCceecCCCCHH---HHHHHHhcCCHHHHhHHHH----HHHHh------CCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 555667777887554 4556887665433333333 34443 4445566777777666655555444433
Q ss_pred C
Q 000897 268 S 268 (1234)
Q Consensus 268 ~ 268 (1234)
+
T Consensus 482 ~ 482 (840)
T PF04147_consen 482 S 482 (840)
T ss_pred c
Confidence 3
No 223
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=27.28 E-value=33 Score=37.09 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=13.4
Q ss_pred CeEEEEeCCCceeecc
Q 000897 920 KLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1234)
-+.+++|||+||+.+.
T Consensus 10 ~k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 10 VDTVLLDMDGTLLDLA 25 (224)
T ss_pred CCEEEEcCCCCccchh
Confidence 3579999999999853
No 224
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=26.72 E-value=1.5e+02 Score=33.99 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=23.0
Q ss_pred hcCceEEEEcCCcHHHHHHHHHHhcCCCce
Q 000897 987 SKLFEMHLYTMGNKLYATEMAKVLDPKGVL 1016 (1234)
Q Consensus 987 Sk~YEIVIFTAGtk~YAd~VLdiLDP~g~L 1016 (1234)
-.-|+|+++|.-++.--....+.|+-++..
T Consensus 37 d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p 66 (274)
T COG3769 37 DAGVPVILCSSKTRAEMLYLQKSLGVQGLP 66 (274)
T ss_pred HcCCeEEEeccchHHHHHHHHHhcCCCCCc
Confidence 356999999888877777777888877643
No 225
>PLN02382 probable sucrose-phosphatase
Probab=26.52 E-value=32 Score=41.14 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.5
Q ss_pred hhhcCCCeEEEEeCCCceeec
Q 000897 914 KMFSARKLCLVLDLDHTLLNS 934 (1234)
Q Consensus 914 kLLs~KKLTLVLDLDETLIHS 934 (1234)
++-...++.||.|||+||+..
T Consensus 3 ~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 3 RLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred cccCCCCEEEEEcCCCcCcCC
Confidence 345678999999999999954
No 226
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=25.17 E-value=42 Score=37.88 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=14.5
Q ss_pred CCeEEEEeCCCceeecc
Q 000897 919 RKLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 919 KKLTLVLDLDETLIHSs 935 (1234)
+-..+|+||||||+.+.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 34579999999999986
No 227
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=24.17 E-value=63 Score=35.10 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
..+++|||+||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 479999999999874
No 228
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=23.50 E-value=43 Score=34.75 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=10.7
Q ss_pred EEEEeCCCceee
Q 000897 922 CLVLDLDHTLLN 933 (1234)
Q Consensus 922 TLVLDLDETLIH 933 (1234)
.+|+|||+||+.
T Consensus 3 ~v~FD~DGTL~~ 14 (205)
T PRK13582 3 IVCLDLEGVLVP 14 (205)
T ss_pred EEEEeCCCCChh
Confidence 689999999993
No 229
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=22.89 E-value=43 Score=35.32 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 000897 920 KLCLVLDLDHTLLNSA 935 (1234)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1234)
-..+++|||+||+-+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 4578999999999875
No 230
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=21.03 E-value=3.6e+02 Score=28.75 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=38.3
Q ss_pred cCceEEEEcCCcHHHHHHHHHHhcCCCceeeeeeeecCCCCCCCCCCCCCCccccCccccCCC-CeEEEEeCCCC
Q 000897 988 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1061 (1234)
Q Consensus 988 k~YEIVIFTAGtk~YAd~VLdiLDP~g~LFs~RIySRDdc~~~~dG~Er~~~iKDLsrVLGrd-s~VVIVDDsp~ 1061 (1234)
..+.+.|.|+....++..+++.+.-. .+|.. + ... + ..++.+...++.. +.++.|.|+..
T Consensus 49 ~Gi~laIiT~k~~~~~~~~l~~lgi~-~~f~~-~--kpk---------p-~~~~~~~~~l~~~~~ev~~iGD~~n 109 (169)
T TIGR02726 49 CGIDVAIITSKKSGAVRHRAEELKIK-RFHEG-I--KKK---------T-EPYAQMLEEMNISDAEVCYVGDDLV 109 (169)
T ss_pred CCCEEEEEECCCcHHHHHHHHHCCCc-EEEec-C--CCC---------H-HHHHHHHHHcCcCHHHEEEECCCHH
Confidence 56999999999999999999998654 34432 1 100 0 0112222234544 67999998863
No 231
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=20.63 E-value=45 Score=39.94 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeecc
Q 000897 921 LCLVLDLDHTLLNSA 935 (1234)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1234)
..+++|||+||+.|.
T Consensus 242 k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 242 QALIFDMDGTLFQTD 256 (459)
T ss_pred hheeEccCCceecch
Confidence 479999999999986
No 232
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=20.21 E-value=1.6e+02 Score=31.64 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=28.0
Q ss_pred EecCCHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhc
Q 000897 974 KLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 1011 (1234)
Q Consensus 974 klRPGLdEFLeeLSk~-YEIVIFTAGtk~YAd~VLdiLD 1011 (1234)
+.|||+.+|+..+.+. |.++--|+-.-..|.....+|.
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~ 65 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLA 65 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHH
Confidence 6899999999998865 7777777766666665555553
Done!