Query 000897
Match_columns 1234
No_of_seqs 280 out of 1406
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 16:58:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000897.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_666-670//hhsearch_pdb/000897hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ef1_A RNA polymerase II subun 1.0 1 1 511.8 29.4 318 901-1232 5-441 (442)
2 3ef0_A RNA polymerase II subun 1.0 1 1 487.2 29.9 308 911-1232 9-371 (372)
3 3qle_A TIM50P; chaperone, mito 1.0 1 1 266.4 13.6 160 916-1141 30-190 (204)
4 3shq_A UBLCP1; phosphatase, hy 1.0 1 1 256.0 5.3 166 916-1139 136-310 (320)
5 2ght_A Carboxy-terminal domain 1.0 1 1 238.5 12.2 166 916-1138 11-181 (181)
6 2hhl_A CTD small phosphatase-l 1.0 1 1 217.6 12.4 157 917-1121 25-186 (195)
7 3l46_A Protein ECT2; alternati 1.0 1 1 144.4 1.9 98 1131-1233 9-106 (112)
8 2cou_A ECT2 protein; BRCT doma 1.0 1 1 139.8 0.8 92 1137-1233 6-97 (109)
9 3l3e_A DNA topoisomerase 2-bin 1.0 1 1 136.5 9.3 91 1138-1233 10-103 (107)
10 2d8m_A DNA-repair protein XRCC 1.0 1 1 134.1 8.4 90 1139-1233 18-107 (129)
No 1
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=511.79 Aligned_cols=318 Identities=32% Similarity=0.532 Sum_probs=258.8
Q ss_pred HHHHHHHHHHH--HHHHHCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHCCCCCCC-CCCCEEEEEC------CCEE
Q ss_conf 64998854688--7733128983999847884452244798898413353100011568-9862024424------6418
Q 000897 901 IQKERTRRLEE--QKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDRE-KPHRHLFRFP------HMGM 971 (1234)
Q Consensus 901 I~re~akrL~~--q~kLls~kKLTLVLDLDETLIHSs~~~eldP~~~Eii~~~EeqD~~-~P~~~lF~i~------~~~~ 971 (1234)
++.+.+.++.. +.+|+..+|++||||||||||||+. +|...+|.........+ ......|.++ .+.|
T Consensus 5 vs~~~a~~~~~~~~~rll~~~Kl~LVLDLDeTLiHs~~----~~~~~~~~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~ 80 (442)
T 3ef1_A 5 VSLEEASRLESENVKRLRQEKRLSLIVXLDQTIIHATV----DPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCY 80 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEECCBTTTEEEEC----CTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEE
T ss_pred ECHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEECCCC----CCCCCHHCCCCCCCCHHHHCCCCCEEEEECCCCCEEEE
T ss_conf 56999999988899999866970899961561221234----56631110377776613321101136102368852699
Q ss_pred EEEECCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 9974478899999861395699991880888999999766999632102552399999889999997212476634997-
Q 000897 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1234)
Q Consensus 972 yVKLRPGL~EFLeeLSk~YEIVIYTAGtkeYAd~VLkiLDP~g~LF~~RIiSRDdc~~~~dG~er~~yiKDLsrILGrd- 1050 (1234)
||++|||+++||++++++|||+|||++.+.||++|+++|||.+.+|.+|+|+|++|+. .|+|||++++||+
T Consensus 81 ~V~~RPgl~eFL~~ls~~yEivIfTas~~~YA~~Vl~~LDp~~~~f~~Rl~sRd~cg~--------~~~KdL~~ll~rdl 152 (442)
T 3ef1_A 81 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGS--------LAQKSLRRLFPCDT 152 (442)
T ss_dssp EEEECTTHHHHHHHHTTTEEEEEECSSCHHHHHHHHHHHCTTSTTTTTCEECTTTSSC--------SSCCCGGGTCSSCC
T ss_pred EEEECCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCC--------CEEEEHHHHCCCCC
T ss_conf 9995878999999872786799984897899999999964477600316997327798--------60500688649994
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC---------CC-----CCC-C--CCCCC-------------------
Q ss_conf 809999089874334857721024311236752---------23-----488-8--99852-------------------
Q 000897 1051 SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSR---------RQ-----FGL-L--GPSLL------------------- 1094 (1234)
Q Consensus 1051 srVVIIDDspdVW~~qpdNlIpIkpY~yF~~s~---------~Q-----~Gl-p--~pSl~------------------- 1094 (1234)
++||||||++.+|..|+ |+|+|++|+||.+.. +| +++ + .|+..
T Consensus 153 ~~vvIIDd~p~~~~~~p-N~I~I~~~~fF~~~gD~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (442)
T 3ef1_A 153 SMVVVIDDRGDVWDWNP-NLIKVVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDS 231 (442)
T ss_dssp TTEEEEESCSGGGTTCT-TEEECCCCCCSTTCCCSCC-------------------------------------------
T ss_pred CEEEEEECCHHHHCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 40899989888828899-77774785256777865443331014554323445555654334443323333456765553
Q ss_pred ---C---------------------------------------------------CCCCC----------CCCCHHHHHH
Q ss_conf ---2---------------------------------------------------34457----------7751246778
Q 000897 1095 ---E---------------------------------------------------IDHDE----------RSEDGTLASS 1110 (1234)
Q Consensus 1095 ---E---------------------------------------------------id~DE----------dpeD~~LlsL 1110 (1234)
+ .+.|+ ...|++|..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~rpl~~~q~~l~~~~~~~~~~~~~l~d~D~~L~~l 311 (442)
T 3ef1_A 232 SNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERL 311 (442)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTSCCSCHHHHCSCCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 33222354445514443202467652136777777665566542047116677775322201220004566884799999
Q ss_pred HHHHHHHHHHCCCCCC--------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEECCC
Q ss_conf 9999998761014688--------78503588888887652158046640023589999888148999988099883046
Q 000897 1111 LGVIERLHKIFFSHQS--------LDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHI 1182 (1234)
Q Consensus 1111 L~lLe~IHq~FF~~~~--------Ld~~DVR~ILkeiR~kILsGC~IvFSGviP~g~dnPe~~~LwkLAeqLGAtVs~dI 1182 (1234)
+.+|.+||+.||...+ ...+||+.||+++|.++|.||+|||||++|.+. ++.+..+|++++.|||+|..++
T Consensus 312 ~~~L~~iH~~fy~~~d~~~~~~~~~~~~Dv~~il~~~k~~~L~G~~IvfSG~~p~~~-~~~r~~l~~~~~~lGa~~~~~v 390 (442)
T 3ef1_A 312 EKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGV-DVLSSDIAKWAMSFGAEVVLDF 390 (442)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCCSSSCCCCHHHHHHHHHHTTSTTCEEEEESSSCTTS-CSTTSHHHHHHHTTTCEECSSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCC-CCCHHHHHHHHHHCCCEEECCC
T ss_conf 999999999999875220345566778758888888753134896899922147888-7008999999997599993777
Q ss_pred CCCCCEEEECCCCCHHHHHHHHC-CCCEECHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89960999678997899999965-990776889999997415798978878
Q 000897 1183 DDQVTHVVANSLGTDKVNWALST-GRFVVHPGWVEASALLYRRANEQDFAI 1232 (1234)
Q Consensus 1183 d~~VTHLVAsk~gT~KVkkAlk~-GIkIVSPeWLedCl~~wkRVdEs~YlL 1232 (1234)
+..||||||...+|.|+++|+++ ||+||+++||++|+..|+|+||..|+|
T Consensus 391 s~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 391 SVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp SSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHCCCC
T ss_conf 998349996799987999998649997970999999998299487140601
No 2
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=487.15 Aligned_cols=308 Identities=32% Similarity=0.548 Sum_probs=253.4
Q ss_pred HHHHHHCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHCCCCCC-CCCCCEEEEEC------CCEEEEEECCCHHHHH
Q ss_conf 8773312898399984788445224479889841335310001156-89862024424------6418997447889999
Q 000897 911 EQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDR-EKPHRHLFRFP------HMGMWTKLRPGIWTFL 983 (1234)
Q Consensus 911 ~q~kLls~kKLTLVLDLDETLIHSs~~~eldP~~~Eii~~~EeqD~-~~P~~~lF~i~------~~~~yVKLRPGL~EFL 983 (1234)
.+.+|+..+|++||||||||||||+. +|...+|......... .......|.++ .+.+||++|||+++||
T Consensus 9 ~~~rl~~~~k~~LVlDLD~TLvhS~~----~~~~~~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL 84 (372)
T 3ef0_A 9 NVKRLRQEKRLSLIVDLDQTIIHATV----DPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFL 84 (372)
T ss_dssp HHHHHHHHTCEEEEECCBTTTEEEEC----CTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCC----CCCCCHHHCCCCCCCHHHHHHHHCEEEEECCCCCEEEEEEEECCCHHHHH
T ss_conf 99999867997899869987551367----67542111267788656653431405555147744799999786899999
Q ss_pred HHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCC
Q ss_conf 9861395699991880888999999766999632102552399999889999997212476634997-809999089874
Q 000897 984 ERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRV 1062 (1234)
Q Consensus 984 eeLSk~YEIVIYTAGtkeYAd~VLkiLDP~g~LF~~RIiSRDdc~~~~dG~er~~yiKDLsrILGrd-srVVIIDDspdV 1062 (1234)
++++++|||+|||++.+.||++|++.|||.+.+|.+|+|+|++|+. .|+|||++++|++ ++||||||++.+
T Consensus 85 ~~l~~~yeivI~Tas~~~yA~~vl~~LDp~~~~f~~ri~sr~~~g~--------~~~KdL~~L~~~dl~~viiiDd~~~~ 156 (372)
T 3ef0_A 85 QKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGS--------LAQKSLRRLFPCDTSMVVVIDDRGDV 156 (372)
T ss_dssp HHHHTTEEEEEECSSCHHHHHHHHHHHCTTSCSSSSCEECTTTSSC--------SSCCCGGGTCSSCCTTEEEEESCSGG
T ss_pred HHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCC--------CCEECHHHHCCCCCCEEEEEECCHHH
T ss_conf 9875586799990885788999999856477543007998537797--------01203789619997429999588787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCC--CCCC------------------------CCCCC----------CCCC
Q ss_conf 3348577210243112367522348--8899--8522------------------------34457----------7751
Q 000897 1063 WPHNKLNLIVVERYTYFPCSRRQFG--LLGP--SLLE------------------------IDHDE----------RSED 1104 (1234)
Q Consensus 1063 W~~qpdNlIpIkpY~yF~~s~~Q~G--lp~p--Sl~E------------------------id~DE----------dpeD 1104 (1234)
|..|| |+|+|+||+||++..+.+. +|.. ++.+ .+.|| ...|
T Consensus 157 ~~~~p-N~I~i~~~~~f~~~~d~n~~~lp~~~~~~~~~~~~~~~~~~~q~~~~p~~~~q~~l~~~e~~~~~~~~~~~d~D 235 (372)
T 3ef0_A 157 WDWNP-NLIKVVPYEFFVGIGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRD 235 (372)
T ss_dssp GTTCT-TEEECCCCCCSTTCCCTTC--------CCGGGGHHHHHHHHHHHHHCHHHHHHHHHHHSCCSCSGGGCSCCCCC
T ss_pred CCCCC-CEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHCCCCCCH
T ss_conf 27898-67664786345876754443356641357776666544455430136156777764100013330103456876
Q ss_pred HHHHHHHHHHHHHHHHCCCCC--------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 246778999999876101468--------878503588888887652158046640023589999888148999988099
Q 000897 1105 GTLASSLGVIERLHKIFFSHQ--------SLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGA 1176 (1234)
Q Consensus 1105 ~~LlsLL~lLe~IHq~FF~~~--------~Ld~~DVR~ILkeiR~kILsGC~IvFSGviP~g~dnPe~~~LwkLAeqLGA 1176 (1234)
++|..++.+|++||+.||+.. ....+||+.+|.++|.++|.||+|||||++|.+. .+++..++++++.+||
T Consensus 236 ~~L~~~~~~L~~iH~~Ff~~~~~~~~~~~~~~~~dv~~ii~~lk~~~L~G~~ivfSG~~~~~~-~~~~~~l~~l~~~lGa 314 (372)
T 3ef0_A 236 HELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGV-DVLSSDIAKWAMSFGA 314 (372)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHTTTSTTCEEEEESSSCTTS-CTTTSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CHHHHHHHHHHHHCCC
T ss_conf 999999999999999999877540234455666608888999876312896899925257876-4658999999997399
Q ss_pred EEECCCCCCCCEEEECCCCCHHHHHHHHC-CCCEECHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88304689960999678997899999965-990776889999997415798978878
Q 000897 1177 VCTKHIDDQVTHVVANSLGTDKVNWALST-GRFVVHPGWVEASALLYRRANEQDFAI 1232 (1234)
Q Consensus 1177 tVs~dId~~VTHLVAsk~gT~KVkkAlk~-GIkIVSPeWLedCl~~wkRVdEs~YlL 1232 (1234)
+|..+++..||||||...+|.|+++|+++ ||+||+++||++|+..|+++||..|++
T Consensus 315 ~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 315 EVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp EEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred EEECCCCCCCEEEEECCCCCHHHHHHHHCCCCEEECHHHHHHHHHHCCCCCHHHCEE
T ss_conf 993767998249997489866999998659998983999999998198687151600
No 3
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Probab=1.00 E-value=1 Score=266.44 Aligned_cols=160 Identities=28% Similarity=0.353 Sum_probs=137.3
Q ss_pred HCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHCCCEEEEE
Q ss_conf 12898399984788445224479889841335310001156898620244246418997447889999986139569999
Q 000897 916 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLY 995 (1234)
Q Consensus 916 ls~kKLTLVLDLDETLIHSs~~~eldP~~~Eii~~~EeqD~~~P~~~lF~i~~~~~yVKLRPGL~EFLeeLSk~YEIVIY 995 (1234)
...+|+||||||||||||+.+. + ..++++++|||+++||++++++|||+||
T Consensus 30 ~~~~~~tLVLDLDeTLvh~~~~----~-------------------------~~~~~v~~RPgl~eFL~~l~~~yeivI~ 80 (204)
T 3qle_A 30 PYQRPLTLVITLEDFLVHSEWS----Q-------------------------KHGWRTAKRPGADYFLGYLSQYYEIVLF 80 (204)
T ss_dssp --CCSEEEEEECBTTTEEEEEE----T-------------------------TTEEEEEECTTHHHHHHHHTTTEEEEEE
T ss_pred CCCCCEEEEEECCCCEEEEECC----C-------------------------CCCEEEEECCCHHHHHHHHHHCCEEEEE
T ss_conf 5689749999453469950226----6-------------------------6764688677999999999838879999
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 1880888999999766999632102552399999889999997212476634997-809999089874334857721024
Q 000897 996 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVE 1074 (1234)
Q Consensus 996 TAGtkeYAd~VLkiLDP~g~LF~~RIiSRDdc~~~~dG~er~~yiKDLsrILGrd-srVVIIDDspdVW~~qpdNlIpIk 1074 (1234)
|++.+.||+.|++.|||.+.+|.+|++ |++|. ..+| .|+|||+ .+|++ +++|||||++.+|..|++|+|+|+
T Consensus 81 Tas~~~ya~~vl~~LDp~~~~f~~rl~-R~~c~-~~~g----~y~KdL~-~Lgrdl~~vIiIDDsp~~~~~~p~N~I~I~ 153 (204)
T 3qle_A 81 SSNYMMYSDKIAEKLDPIHAFVSYNLF-KEHCV-YKDG----VHIKDLS-KLNRDLSKVIIIDTDPNSYKLQPENAIPME 153 (204)
T ss_dssp CSSCHHHHHHHHHHTSTTCSSEEEEEC-GGGSE-EETT----EEECCGG-GSCSCGGGEEEEESCTTTTTTCGGGEEECC
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEE-ECCEE-EECC----EEEECHH-HHCCCHHHEEEEECCHHHHHHCCCCCEEEE
T ss_conf 289679999999996898775889999-63546-7788----1651088-739996789999788898740965735740
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3112367522348889985223445777512467789999998761014688785035888888876
Q 000897 1075 RYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQR 1141 (1234)
Q Consensus 1075 pY~yF~~s~~Q~Glp~pSl~Eid~DEdpeD~~LlsLL~lLe~IHq~FF~~~~Ld~~DVR~ILkeiR~ 1141 (1234)
+|. +..|.+|..+++||+.|+.. ...|||.+|+..+.
T Consensus 154 ~~~-----------------------~~~D~eL~~L~~~L~~L~~~-------~~~DVR~~L~~~~~ 190 (204)
T 3qle_A 154 PWN-----------------------GEADDKLVRLIPFLEYLATQ-------QTKDVRPILNSFED 190 (204)
T ss_dssp CCC-----------------------SSCCCHHHHHHHHHHHHHHT-------CCSCSHHHHTTSSC
T ss_pred EEC-----------------------CCCCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHCC
T ss_conf 278-----------------------99976499999999998645-------73789999998557
No 4
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=256.01 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=134.6
Q ss_pred HCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHCCCEEEEE
Q ss_conf 12898399984788445224479889841335310001156898620244246418997447889999986139569999
Q 000897 916 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLY 995 (1234)
Q Consensus 916 ls~kKLTLVLDLDETLIHSs~~~eldP~~~Eii~~~EeqD~~~P~~~lF~i~~~~~yVKLRPGL~EFLeeLSk~YEIVIY 995 (1234)
...+|+|||||||+||||+.. +. ..+++++|||+++||++|+++|||+||
T Consensus 136 ~~~~k~tLVLDLDeTLvh~~~-----~~-------------------------~~~~~~~RP~l~eFL~~l~~~yeivIf 185 (320)
T 3shq_A 136 PREGKKLLVLDIDYTLFDHRS-----PA-------------------------ETGTELMRPYLHEFLTSAYEDYDIVIW 185 (320)
T ss_dssp CCTTCEEEEECCBTTTBCSSS-----CC-------------------------SSHHHHBCTTHHHHHHHHHHHEEEEEE
T ss_pred CCCCCCEEEEECCCCEECCCC-----CC-------------------------CCCCEEECCCHHHHHHHHHHCCEEEEE
T ss_conf 768983899945244773556-----67-------------------------786257588999999999857779998
Q ss_pred CCCCHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCC-CCCCC-CCCCCCCCCCC----CCC-CEEEEEECCCCCCCCCC
Q ss_conf 188088899999976699963-210255239999988-99999-97212476634----997-80999908987433485
Q 000897 996 TMGNKLYATEMAKVLDPKGVL-FAGRVISRGDDGDPF-DGDER-VPKSKDLEGVL----GME-SAVVIIDDSVRVWPHNK 1067 (1234)
Q Consensus 996 TAGtkeYAd~VLkiLDP~g~L-F~~RIiSRDdc~~~~-dG~er-~~yiKDLsrIL----Grd-srVVIIDDspdVW~~qp 1067 (1234)
|++.+.||++|++.|||.+.+ |.+|+| |++|+.+. ..... ..|+|||++++ |++ +++|||||+|.+|..||
T Consensus 186 Tas~~~ya~~vld~Ld~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~vKdLs~Lw~~~p~rdl~~tIiIDdsp~~~~~~p 264 (320)
T 3shq_A 186 SATSMRWIEEKMRLLGVASNDNYKVMFY-LDSTAMISVHVPERGVVDVKPLGVIWALYKQYNSSNTIMFDDIRRNFLMNP 264 (320)
T ss_dssp CSSCHHHHHHHHHHTTCTTCSSCCCCEE-ECGGGCEEEEETTTEEEEECCHHHHHHHCTTCCGGGEEEEESCGGGGTTSG
T ss_pred CCCCHHHHHHHHHHHCCCCCCCEEEEEE-ECCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCHHHEEEEECCHHHHCCCC
T ss_conf 2885899999999868777755659999-827700045435779778878288541157898467899968867746286
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHH
Q ss_conf 772102431123675223488899852234457775124677899999987-610146887850358888888
Q 000897 1068 LNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLH-KIFFSHQSLDDVDVRNILAAE 1139 (1234)
Q Consensus 1068 dNlIpIkpY~yF~~s~~Q~Glp~pSl~Eid~DEdpeD~~LlsLL~lLe~IH-q~FF~~~~Ld~~DVR~ILkei 1139 (1234)
+|+|+|.+|.+... +++.|.+|..+++||+.|+ . ..|||.+++..
T Consensus 265 ~NgI~I~~~~~~~~------------------~~~~D~eL~~L~~~L~~L~~~---------~~DVr~~~~~~ 310 (320)
T 3shq_A 265 KSGLKIRPFRQAHL------------------NRGTDTELLKLSDYLRKIAHH---------CPDFNSLNHRK 310 (320)
T ss_dssp GGEEECCCCCCHHH------------------HTTTCCHHHHHHHHHHHHHHH---------CSCGGGCCGGG
T ss_pred CCEEEECEECCCCC------------------CCCCCHHHHHHHHHHHHHHCC---------CCCHHHHHHHH
T ss_conf 76678374817877------------------898668799999999998545---------75504889987
No 5
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Probab=1.00 E-value=1 Score=238.51 Aligned_cols=166 Identities=29% Similarity=0.398 Sum_probs=137.4
Q ss_pred HCCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEE--EC--CCEEEEEECCCHHHHHHHHHCCCE
Q ss_conf 12898399984788445224479889841335310001156898620244--24--641899744788999998613956
Q 000897 916 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFR--FP--HMGMWTKLRPGIWTFLERASKLFE 991 (1234)
Q Consensus 916 ls~kKLTLVLDLDETLIHSs~~~eldP~~~Eii~~~EeqD~~~P~~~lF~--i~--~~~~yVKLRPGL~EFLeeLSk~YE 991 (1234)
...+|++|||||||||||+.... ... ..+.+. +. ...+|+++|||+++||++++++||
T Consensus 11 ~~~~k~~LVLDLD~TLvhs~~~~----~~~--------------~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~~~ 72 (181)
T 2ght_A 11 QDSDKICVVINLDETLVHSSFKP----VNN--------------ADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFE 72 (181)
T ss_dssp GGTTSCEEEECCBTTTEEEESSC----CSS--------------CSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHHSE
T ss_pred CCCCCEEEEECCCCCEECCCCCC----CCC--------------CCCEEEEEECCEEEEEEEEECCCHHHHHHHHHHCCC
T ss_conf 34797189998988758775667----877--------------661555543781678999768799999999982799
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCC
Q ss_conf 99991880888999999766999632102552399999889999997212476634997-80999908987433485772
Q 000897 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNL 1070 (1234)
Q Consensus 992 IVIYTAGtkeYAd~VLkiLDP~g~LF~~RIiSRDdc~~~~dG~er~~yiKDLsrILGrd-srVVIIDDspdVW~~qpdNl 1070 (1234)
++|||++.+.||+.+++.|||.+ +|.+|++ |++|.. ..+ .|.|+|+ .+|++ +++|||||++..|..++.|+
T Consensus 73 i~I~T~~~~~~a~~vl~~ld~~~-~f~~~~~-rd~~~~-~k~----~~~k~L~-~Lg~~~~~~vivdDs~~~~~~~~~ng 144 (181)
T 2ght_A 73 CVLFTASLAKYADPVADLLDKWG-AFRARLF-RESCVF-HRG----NYVKDLS-RLGRDLRRVLILDNSPASYVFHPDNA 144 (181)
T ss_dssp EEEECSSCHHHHHHHHHHHCTTC-CEEEEEC-GGGSEE-ETT----EEECCGG-GTCSCGGGEEEECSCGGGGTTCTTSB
T ss_pred EEEECCCCHHHHHHHHHHHCCCC-CEEEEEE-CCCCEE-CCC----CEECCHH-HHCCCCCEEEEEECCHHHHCCCCCCE
T ss_conf 99993998899999999879877-5789996-557262-599----6763477-93988250999959877732272777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 10243112367522348889985223445777512467789999998761014688785035888888
Q 000897 1071 IVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138 (1234)
Q Consensus 1071 IpIkpY~yF~~s~~Q~Glp~pSl~Eid~DEdpeD~~LlsLL~lLe~IHq~FF~~~~Ld~~DVR~ILke 1138 (1234)
|+|.+|.. ++.|.+|..++++|+.|+. ..|||++|++
T Consensus 145 i~i~~~~~----------------------~~~D~eL~~l~~~L~~l~~---------~~DVr~~l~~ 181 (181)
T 2ght_A 145 VPVASWFD----------------------NMSDTELHDLLPFFEQLSR---------VDDVYSVLRQ 181 (181)
T ss_dssp CCCCCCSS----------------------CTTCCHHHHHHHHHHHHTT---------CSCTHHHHCC
T ss_pred EEECCCCC----------------------CCCHHHHHHHHHHHHHHCC---------CCCHHHHHHC
T ss_conf 48255568----------------------9983799999999998674---------7627888609
No 6
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=217.64 Aligned_cols=157 Identities=29% Similarity=0.388 Sum_probs=129.0
Q ss_pred CCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEE--EC--CCEEEEEECCCHHHHHHHHHCCCEE
Q ss_conf 2898399984788445224479889841335310001156898620244--24--6418997447889999986139569
Q 000897 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFR--FP--HMGMWTKLRPGIWTFLERASKLFEM 992 (1234)
Q Consensus 917 s~kKLTLVLDLDETLIHSs~~~eldP~~~Eii~~~EeqD~~~P~~~lF~--i~--~~~~yVKLRPGL~EFLeeLSk~YEI 992 (1234)
..+|++||||||||||||.+.. ... . .+.+. +. ...+++++|||+++||++++++|++
T Consensus 25 ~~~k~~LVLDLD~TLvhs~~~~----~~~--------~------d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~~~i 86 (195)
T 2hhl_A 25 DYGKKCVVIDLDETLVHSSFKP----ISN--------A------DFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFEC 86 (195)
T ss_dssp GTTCCEEEECCBTTTEEEESSC----CTT--------C------SEEEEEEETTEEEEEEEEECTTHHHHHHHHHHHSEE
T ss_pred CCCCEEEEECCCCCEECCCCCC----CCC--------C------CCEEEEECCCCEEEEEEEECCCHHHHHHHHHCCCEE
T ss_conf 5787289981610437565667----777--------6------505543027832568887686899999999729849
Q ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCC
Q ss_conf 9991880888999999766999632102552399999889999997212476634997-809999089874334857721
Q 000897 993 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLI 1071 (1234)
Q Consensus 993 VIYTAGtkeYAd~VLkiLDP~g~LF~~RIiSRDdc~~~~dG~er~~yiKDLsrILGrd-srVVIIDDspdVW~~qpdNlI 1071 (1234)
+|||++.+.||+.+++.|||.+ +|..|++ |++|.. .++ .|.|+|+ .+|++ +++|||||++..|..++.|+|
T Consensus 87 ~I~Tss~~~~a~~vl~~ld~~~-~f~~~l~-rd~~~~-~k~----~~lK~L~-~Lg~~~~~~vivDDs~~~~~~~~~ngi 158 (195)
T 2hhl_A 87 VLFTASLAKYADPVADLLDRWG-VFRARLF-RESCVF-HRG----NYVKDLS-RLGRELSKVIIVDNSPASYIFHPENAV 158 (195)
T ss_dssp EEECSSCHHHHHHHHHHHCCSS-CEEEEEC-GGGCEE-ETT----EEECCGG-GSSSCGGGEEEEESCGGGGTTCGGGEE
T ss_pred EEECCCCHHHHHHHHHHHCCCC-CEEEEEE-CCCCEE-CCC----CEEEEHH-HHCCCHHHEEEEECCHHHHHHCCCCCC
T ss_conf 9991897899999999759715-4899997-546551-599----4553486-729996579999798898643734712
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 02431123675223488899852234457775124677899999987610
Q 000897 1072 VVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIF 1121 (1234)
Q Consensus 1072 pIkpY~yF~~s~~Q~Glp~pSl~Eid~DEdpeD~~LlsLL~lLe~IHq~F 1121 (1234)
+|.+|.. +++|.+|..+++||+.|+...
T Consensus 159 ~i~~~~~----------------------~~~D~eL~~L~~~L~~l~~~~ 186 (195)
T 2hhl_A 159 PVQSWFD----------------------DMTDTELLDLIPFFEGLSRED 186 (195)
T ss_dssp ECCCCSS----------------------CTTCCHHHHHHHHHHHHHC--
T ss_pred EEEEECC----------------------CCCHHHHHHHHHHHHHHHHCC
T ss_conf 7724358----------------------997278999999999998486
No 7
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=1.00 E-value=1 Score=144.43 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCEE
Q ss_conf 35888888876521580466400235899998881489999880998830468996099967899789999996599077
Q 000897 1131 DVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVV 1210 (1234)
Q Consensus 1131 DVR~ILkeiR~kILsGC~IvFSGviP~g~dnPe~~~LwkLAeqLGAtVs~dId~~VTHLVAsk~gT~KVkkAlk~GIkIV 1210 (1234)
.-|.-+.+++.++|.||+|||+|+.. .++..++++++++||+|...+++.|||||+....+.|+..|++++++||
T Consensus 9 ~~~~~~~~~~~p~F~g~~Ic~sGf~~-----~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IV 83 (112)
T 3l46_A 9 SGRENLYFQGVPPFQDCILSFLGFSD-----EEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVV 83 (112)
T ss_dssp ---------CCCTTTTCEECEESCCH-----HHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCH-----HHHHHHHHHHHHCCCEECCCCCCCCEEEEECCCCHHHHHHHHHCCEEEE
T ss_conf 55464013478866990899848987-----9999999999983999876668873599955884056777877990085
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 68899999974157989788789
Q 000897 1211 HPGWVEASALLYRRANEQDFAIK 1233 (1234)
Q Consensus 1211 SPeWLedCl~~wkRVdEs~YlL~ 1233 (1234)
+++||++|+..+.++||+.|.++
T Consensus 84 s~eWl~dsi~~g~~ldE~~Y~~~ 106 (112)
T 3l46_A 84 KQEWFWGSIQMDARAGETMYLYE 106 (112)
T ss_dssp EHHHHHHHHHHTSCCCGGGSBCC
T ss_pred CHHHHHHHHHCCCCCCHHHCEEC
T ss_conf 48999999986971681444220
No 8
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=139.81 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=83.5
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCEECHHHHH
Q ss_conf 88876521580466400235899998881489999880998830468996099967899789999996599077688999
Q 000897 1137 AAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVE 1216 (1234)
Q Consensus 1137 keiR~kILsGC~IvFSGviP~g~dnPe~~~LwkLAeqLGAtVs~dId~~VTHLVAsk~gT~KVkkAlk~GIkIVSPeWLe 1216 (1234)
.+++.++|.||+|||+|+-. .++..++++++.+||.|...+++.|||||+....+.|++.|++++++||+++||+
T Consensus 6 ~~~~~~~F~g~~i~~sg~~~-----~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~ 80 (109)
T 2cou_A 6 SGFKVPPFQDCILSFLGFSD-----EEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFW 80 (109)
T ss_dssp CSSCCCTTTTCBEEEESSCH-----HHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHH
T ss_pred CCCCCCCCCCEEEEECCCCH-----HHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCCCHHHHHHHHCCCEEECHHHHH
T ss_conf 46257767996899659998-----9999999999982999845568875689985786478999998899183689999
Q ss_pred HHHHHCCCCCCCCCCCC
Q ss_conf 99974157989788789
Q 000897 1217 ASALLYRRANEQDFAIK 1233 (1234)
Q Consensus 1217 dCl~~wkRVdEs~YlL~ 1233 (1234)
+|+..++++||..|.+.
T Consensus 81 dsi~~g~~ldE~~Y~~~ 97 (109)
T 2cou_A 81 GSIQMDARAGETMYLYE 97 (109)
T ss_dssp HHHHTTSCCCGGGTBCC
T ss_pred HHHHCCCCCCHHCCCCC
T ss_conf 99986983880026788
No 9
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=1.00 E-value=1 Score=136.45 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=82.6
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCEEEE---CCCCCHHHHHHHHCCCCEECHHH
Q ss_conf 887652158046640023589999888148999988099883046899609996---78997899999965990776889
Q 000897 1138 AEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVA---NSLGTDKVNWALSTGRFVVHPGW 1214 (1234)
Q Consensus 1138 eiR~kILsGC~IvFSGviP~g~dnPe~~~LwkLAeqLGAtVs~dId~~VTHLVA---sk~gT~KVkkAlk~GIkIVSPeW 1214 (1234)
+...++|.||+|||+|+++. .+..++++++.+||.+..+++..|||||| ....+.|+++|++.|++||+++|
T Consensus 10 ~~~~~~l~g~~i~isg~~~~-----~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~W 84 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKLSK-----KQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHW 84 (107)
T ss_dssp ----CTTTTCEEEECGGGGG-----GHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHH
T ss_pred CCCCCCCCCEEEEEECCCHH-----HHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCCHHHHHHHHCCCEEECHHH
T ss_conf 65667889869999178737-----6999999999859999443438724999658777877899999988993946899
Q ss_pred HHHHHHHCCCCCCCCCCCC
Q ss_conf 9999974157989788789
Q 000897 1215 VEASALLYRRANEQDFAIK 1233 (1234)
Q Consensus 1215 LedCl~~wkRVdEs~YlL~ 1233 (1234)
|++|+..|+++||..|++.
T Consensus 85 l~~c~~~~~~l~e~~Y~~~ 103 (107)
T 3l3e_A 85 LLDCAQECKHLPESLYPHT 103 (107)
T ss_dssp HHHHHHHTSCCCGGGCCTT
T ss_pred HHHHHHHCCCCCHHHCCCC
T ss_conf 9999981977866438888
No 10
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=134.06 Aligned_cols=90 Identities=27% Similarity=0.336 Sum_probs=82.9
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCEECHHHHHHH
Q ss_conf 87652158046640023589999888148999988099883046899609996789978999999659907768899999
Q 000897 1139 EQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEAS 1218 (1234)
Q Consensus 1139 iR~kILsGC~IvFSGviP~g~dnPe~~~LwkLAeqLGAtVs~dId~~VTHLVAsk~gT~KVkkAlk~GIkIVSPeWLedC 1218 (1234)
...++|.||+|||+|++. +.+..++.+++.+||+|...++..||||||....+.||.+|+++|++||+++||++|
T Consensus 18 ~~~~~f~g~~i~itG~~~-----~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~ 92 (129)
T 2d8m_A 18 ELGKILQGVVVVLSGFQN-----PFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDC 92 (129)
T ss_dssp HHTTTSTTEEEEEESCCT-----THHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHH
T ss_pred CCCCCCCCEEEEEECCCC-----HHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCHHHHHHHHCCCCEECHHHHHHH
T ss_conf 745457992899808973-----889999999998699991875899869996389996999999879958559999999
Q ss_pred HHHCCCCCCCCCCCC
Q ss_conf 974157989788789
Q 000897 1219 ALLYRRANEQDFAIK 1233 (1234)
Q Consensus 1219 l~~wkRVdEs~YlL~ 1233 (1234)
+..|++++|..|++.
T Consensus 93 ~~~~~~l~e~~Y~l~ 107 (129)
T 2d8m_A 93 HRMRRRLPSQRYLMA 107 (129)
T ss_dssp HHTTSCCCGGGGBCS
T ss_pred HHHCCCCCHHHCCCC
T ss_conf 980984885760258
Done!