Query 000903
Match_columns 1232
No_of_seqs 697 out of 4091
Neff 7.5
Searched_HMMs 46136
Date Tue Apr 2 00:45:39 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 9E-175 2E-179 1569.0 60.5 926 101-1120 184-1172(1373)
2 KOG0385 Chromatin remodeling c 100.0 5E-150 1E-154 1299.2 53.2 769 275-1134 157-959 (971)
3 PLN03142 Probable chromatin-re 100.0 2E-128 4E-133 1218.0 57.0 765 272-1133 157-986 (1033)
4 KOG0386 Chromatin remodeling c 100.0 8E-97 2E-101 877.7 31.7 506 272-810 381-906 (1157)
5 KOG0389 SNF2 family DNA-depend 100.0 1.1E-94 2.4E-99 842.0 41.3 464 274-761 387-913 (941)
6 KOG0391 SNF2 family DNA-depend 100.0 2.8E-93 6E-98 843.0 35.7 470 283-776 613-1429(1958)
7 KOG0388 SNF2 family DNA-depend 100.0 2.2E-92 4.7E-97 805.9 32.5 457 274-759 557-1177(1185)
8 KOG0383 Predicted helicase [Ge 100.0 9.6E-93 2.1E-97 848.7 20.4 625 46-690 42-696 (696)
9 KOG0387 Transcription-coupled 100.0 6E-90 1.3E-94 803.9 39.9 489 270-779 191-702 (923)
10 KOG0392 SNF2 family DNA-depend 100.0 2.7E-83 5.9E-88 769.8 38.3 465 284-775 974-1495(1549)
11 KOG0390 DNA repair protein, SN 100.0 1.7E-71 3.7E-76 670.6 44.2 453 284-760 237-731 (776)
12 KOG1015 Transcription regulato 100.0 4.4E-68 9.5E-73 620.8 34.3 471 284-779 667-1321(1567)
13 KOG1002 Nucleotide excision re 100.0 1.5E-65 3.3E-70 568.5 36.0 469 274-774 174-789 (791)
14 KOG4439 RNA polymerase II tran 100.0 1.3E-64 2.9E-69 582.8 34.2 473 273-774 314-899 (901)
15 COG0553 HepA Superfamily II DN 100.0 4.2E-64 9.1E-69 658.2 38.4 472 282-775 335-864 (866)
16 KOG1016 Predicted DNA helicase 100.0 1.4E-57 3.1E-62 523.3 25.4 470 284-778 253-892 (1387)
17 KOG1000 Chromatin remodeling p 100.0 2.4E-55 5.2E-60 489.2 31.5 409 285-756 198-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 8.1E-53 1.7E-57 531.2 36.3 417 284-760 151-629 (956)
19 KOG1001 Helicase-like transcri 100.0 3.9E-48 8.4E-53 472.7 24.8 437 288-758 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 7.7E-41 1.7E-45 383.4 22.2 272 289-586 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 2.7E-37 5.9E-42 378.3 36.1 341 283-746 253-617 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 5.7E-33 1.2E-37 358.2 40.0 430 284-753 14-496 (773)
23 COG1111 MPH1 ERCC4-like helica 100.0 5.8E-29 1.3E-33 283.1 33.4 422 284-754 14-499 (542)
24 KOG0298 DEAD box-containing he 100.0 5E-30 1.1E-34 314.5 23.3 256 302-584 372-689 (1394)
25 COG1061 SSL2 DNA or RNA helica 100.0 2.8E-28 6.1E-33 292.4 31.6 362 283-748 34-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 1.4E-27 3E-32 291.9 32.9 336 283-736 112-455 (501)
27 PF06461 DUF1086: Domain of Un 100.0 3.5E-28 7.7E-33 234.6 13.2 132 937-1069 10-142 (145)
28 PTZ00110 helicase; Provisional 99.9 9.2E-23 2E-27 251.3 32.8 319 284-736 151-484 (545)
29 TIGR00614 recQ_fam ATP-depende 99.9 1.2E-22 2.7E-27 247.0 29.5 308 284-730 10-329 (470)
30 PRK01297 ATP-dependent RNA hel 99.9 2.7E-22 5.8E-27 244.9 30.9 316 284-736 108-442 (475)
31 PRK10590 ATP-dependent RNA hel 99.9 2.4E-22 5.2E-27 243.7 30.2 309 285-729 23-347 (456)
32 PRK11776 ATP-dependent RNA hel 99.9 2.3E-22 5.1E-27 244.6 29.7 314 284-736 25-349 (460)
33 PLN00206 DEAD-box ATP-dependen 99.9 3.9E-22 8.5E-27 245.0 30.7 315 284-736 142-475 (518)
34 KOG0354 DEAD-box like helicase 99.9 4.5E-21 9.7E-26 231.3 37.4 405 284-734 61-527 (746)
35 PRK11192 ATP-dependent RNA hel 99.9 9.3E-22 2E-26 237.8 31.4 312 284-729 22-347 (434)
36 PRK04837 ATP-dependent RNA hel 99.9 4E-22 8.6E-27 240.0 27.5 313 285-735 30-361 (423)
37 PRK11634 ATP-dependent RNA hel 99.9 3.2E-21 7E-26 239.8 33.4 309 284-728 27-346 (629)
38 PRK04537 ATP-dependent RNA hel 99.9 1.3E-21 2.8E-26 242.0 29.2 312 285-735 31-363 (572)
39 PRK11057 ATP-dependent DNA hel 99.9 2.9E-21 6.4E-26 241.2 29.3 304 284-728 24-337 (607)
40 TIGR01389 recQ ATP-dependent D 99.9 4E-21 8.7E-26 240.5 29.8 304 284-728 12-325 (591)
41 PTZ00424 helicase 45; Provisio 99.9 5.9E-21 1.3E-25 228.6 29.2 317 284-737 49-375 (401)
42 KOG0331 ATP-dependent RNA heli 99.9 6.9E-21 1.5E-25 223.6 28.7 312 285-728 113-442 (519)
43 KOG0330 ATP-dependent RNA heli 99.9 6.5E-21 1.4E-25 209.9 22.1 322 285-746 83-415 (476)
44 PLN03137 ATP-dependent DNA hel 99.9 1.7E-20 3.8E-25 235.6 28.7 311 284-731 459-784 (1195)
45 KOG1123 RNA polymerase II tran 99.9 3.6E-21 7.8E-26 216.3 19.2 341 282-742 299-659 (776)
46 PRK13767 ATP-dependent helicas 99.9 8.7E-20 1.9E-24 235.7 33.7 322 284-731 31-395 (876)
47 PRK11448 hsdR type I restricti 99.9 1.8E-20 3.9E-25 243.5 27.2 356 283-733 411-815 (1123)
48 TIGR00643 recG ATP-dependent D 99.9 2.2E-19 4.8E-24 225.3 32.7 305 284-728 234-560 (630)
49 TIGR03817 DECH_helic helicase/ 99.9 1.7E-19 3.7E-24 228.6 31.2 330 285-744 36-394 (742)
50 TIGR00580 mfd transcription-re 99.9 3.6E-19 7.9E-24 227.6 33.8 308 284-735 450-769 (926)
51 PRK10917 ATP-dependent DNA hel 99.8 4.1E-19 8.8E-24 224.3 32.3 304 284-727 260-582 (681)
52 PRK10689 transcription-repair 99.8 3.2E-19 7E-24 232.7 28.1 303 284-728 599-913 (1147)
53 COG0513 SrmB Superfamily II DN 99.8 1.6E-18 3.5E-23 211.8 30.2 328 284-749 50-392 (513)
54 COG1201 Lhr Lhr-like helicases 99.8 1.5E-17 3.2E-22 206.0 28.5 322 284-742 21-366 (814)
55 PRK02362 ski2-like helicase; P 99.8 7.2E-18 1.6E-22 215.9 26.4 317 284-735 22-396 (737)
56 TIGR01587 cas3_core CRISPR-ass 99.8 1.2E-17 2.5E-22 197.2 25.8 328 307-750 2-355 (358)
57 PRK00254 ski2-like helicase; P 99.8 4E-17 8.7E-22 208.6 28.4 317 284-737 22-389 (720)
58 PRK01172 ski2-like helicase; P 99.8 2.4E-17 5.1E-22 209.7 26.0 305 284-729 21-371 (674)
59 TIGR03714 secA2 accessory Sec 99.8 7.4E-17 1.6E-21 199.1 28.0 117 606-728 406-531 (762)
60 KOG0350 DEAD-box ATP-dependent 99.8 1.8E-17 3.9E-22 187.9 19.6 357 285-736 159-540 (620)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.3E-16 2.7E-21 198.9 27.4 107 621-732 269-390 (844)
62 TIGR00348 hsdR type I site-spe 99.8 2.7E-16 5.8E-21 198.0 30.6 362 284-734 237-649 (667)
63 KOG0328 Predicted ATP-dependen 99.7 5.5E-17 1.2E-21 172.0 19.3 315 286-738 50-375 (400)
64 KOG0345 ATP-dependent RNA heli 99.7 3.2E-16 6.9E-21 176.9 25.5 312 284-731 27-361 (567)
65 PRK09200 preprotein translocas 99.7 1E-15 2.2E-20 190.9 30.1 131 605-745 409-547 (790)
66 PHA02653 RNA helicase NPH-II; 99.7 8.6E-16 1.9E-20 190.7 27.8 322 283-738 158-516 (675)
67 PRK12898 secA preprotein trans 99.7 7.1E-16 1.5E-20 188.5 25.8 131 605-745 454-592 (656)
68 TIGR00963 secA preprotein tran 99.7 1.8E-16 4E-21 194.3 20.2 118 606-728 387-511 (745)
69 PRK09751 putative ATP-dependen 99.7 9.9E-16 2.1E-20 201.1 27.3 96 623-721 243-371 (1490)
70 COG0514 RecQ Superfamily II DN 99.7 1.4E-15 3E-20 182.5 25.5 305 284-729 16-332 (590)
71 KOG0342 ATP-dependent RNA heli 99.7 4.6E-16 9.9E-21 177.0 18.9 307 285-726 104-429 (543)
72 KOG0335 ATP-dependent RNA heli 99.7 1.4E-15 3E-20 176.3 21.9 309 284-731 95-441 (482)
73 KOG0338 ATP-dependent RNA heli 99.7 5.5E-15 1.2E-19 167.8 23.5 323 285-746 203-541 (691)
74 TIGR03158 cas3_cyano CRISPR-as 99.7 1.4E-14 3E-19 170.2 27.8 85 623-719 271-357 (357)
75 KOG0333 U5 snRNP-like RNA heli 99.7 3.6E-15 7.7E-20 170.1 20.5 339 285-736 267-624 (673)
76 KOG0341 DEAD-box protein abstr 99.7 5.4E-16 1.2E-20 170.3 12.5 320 285-743 192-535 (610)
77 COG4889 Predicted helicase [Ge 99.7 3.5E-15 7.6E-20 177.1 19.8 395 283-733 159-585 (1518)
78 COG4096 HsdR Type I site-speci 99.6 3.6E-15 7.7E-20 179.9 20.2 351 283-733 163-545 (875)
79 KOG0343 RNA Helicase [RNA proc 99.6 1E-14 2.2E-19 167.0 22.8 327 285-750 91-435 (758)
80 KOG0340 ATP-dependent RNA heli 99.6 2.7E-14 5.8E-19 156.5 24.7 317 285-738 29-363 (442)
81 PRK09401 reverse gyrase; Revie 99.6 2E-14 4.4E-19 188.5 28.5 295 283-722 78-432 (1176)
82 PRK05580 primosome assembly pr 99.6 8.6E-14 1.9E-18 175.6 33.1 153 284-466 143-304 (679)
83 COG1205 Distinct helicase fami 99.6 2E-14 4.3E-19 183.3 25.9 332 284-746 69-432 (851)
84 COG1200 RecG RecG-like helicas 99.6 4.2E-14 9E-19 169.2 26.7 305 284-727 261-584 (677)
85 cd00079 HELICc Helicase superf 99.6 1.6E-15 3.6E-20 151.3 11.6 120 608-730 12-131 (131)
86 KOG0339 ATP-dependent RNA heli 99.6 2.8E-14 6.1E-19 161.8 22.4 319 285-739 245-578 (731)
87 KOG0348 ATP-dependent RNA heli 99.6 7.8E-14 1.7E-18 159.6 25.8 121 606-729 403-549 (708)
88 KOG4284 DEAD box protein [Tran 99.6 3.2E-14 7E-19 165.1 19.8 309 287-725 49-370 (980)
89 PF04851 ResIII: Type III rest 99.6 6.7E-15 1.4E-19 155.9 13.3 165 284-467 2-183 (184)
90 TIGR00595 priA primosomal prot 99.6 2.6E-13 5.6E-18 165.5 28.0 93 637-732 271-379 (505)
91 PRK13104 secA preprotein trans 99.6 2.5E-13 5.4E-18 169.2 27.4 130 606-745 426-593 (896)
92 PF09111 SLIDE: SLIDE; InterP 99.6 6.5E-17 1.4E-21 156.0 -4.4 100 1024-1132 1-111 (118)
93 KOG0332 ATP-dependent RNA heli 99.6 7.1E-14 1.5E-18 154.0 18.3 324 268-725 89-434 (477)
94 PRK09694 helicase Cas3; Provis 99.6 3.6E-13 7.7E-18 171.3 27.0 357 283-724 284-665 (878)
95 KOG0336 ATP-dependent RNA heli 99.6 1.9E-13 4.1E-18 151.5 19.8 316 285-736 242-572 (629)
96 COG4098 comFA Superfamily II D 99.5 4.4E-12 9.6E-17 138.9 30.0 317 280-737 92-417 (441)
97 TIGR01054 rgy reverse gyrase. 99.5 4.5E-13 9.9E-18 176.2 26.9 131 284-442 77-213 (1171)
98 TIGR01970 DEAH_box_HrpB ATP-de 99.5 3.6E-13 7.9E-18 171.3 24.5 109 623-737 208-337 (819)
99 KOG0326 ATP-dependent RNA heli 99.5 2E-14 4.3E-19 155.0 10.4 309 286-734 108-427 (459)
100 PRK12906 secA preprotein trans 99.5 6.1E-13 1.3E-17 165.1 24.4 118 606-728 422-547 (796)
101 PRK14701 reverse gyrase; Provi 99.5 6.6E-13 1.4E-17 177.9 26.5 336 284-724 78-446 (1638)
102 PF08074 CHDCT2: CHDCT2 (NUC03 99.5 7.5E-15 1.6E-19 144.0 5.9 88 1081-1231 3-90 (173)
103 PRK12904 preprotein translocas 99.5 1.1E-12 2.3E-17 163.5 26.4 120 606-730 412-569 (830)
104 COG1204 Superfamily II helicas 99.5 5.9E-13 1.3E-17 167.8 24.1 158 285-476 31-198 (766)
105 KOG0347 RNA helicase [RNA proc 99.5 5.6E-13 1.2E-17 153.1 19.6 127 625-756 464-611 (731)
106 PRK13107 preprotein translocas 99.5 1.2E-12 2.6E-17 162.6 23.1 119 606-729 431-586 (908)
107 PRK11664 ATP-dependent RNA hel 99.5 1.9E-12 4.2E-17 165.1 24.2 111 623-739 211-342 (812)
108 PF00271 Helicase_C: Helicase 99.5 6E-14 1.3E-18 127.5 7.2 78 642-722 1-78 (78)
109 COG1197 Mfd Transcription-repa 99.5 1.3E-11 2.9E-16 155.5 28.4 324 284-754 593-928 (1139)
110 COG1202 Superfamily II helicas 99.5 1.5E-12 3.3E-17 150.1 18.2 314 284-736 215-553 (830)
111 TIGR00631 uvrb excinuclease AB 99.4 8.3E-11 1.8E-15 147.0 33.9 133 607-745 425-564 (655)
112 KOG0344 ATP-dependent RNA heli 99.4 2.9E-12 6.2E-17 149.8 17.7 122 607-735 372-494 (593)
113 smart00487 DEXDc DEAD-like hel 99.4 2.5E-12 5.5E-17 136.9 15.8 156 283-468 6-172 (201)
114 KOG0334 RNA helicase [RNA proc 99.4 4.1E-12 8.9E-17 157.2 19.3 123 607-735 597-719 (997)
115 KOG0346 RNA helicase [RNA proc 99.4 3.8E-12 8.3E-17 143.1 16.3 147 579-729 222-405 (569)
116 cd00046 DEXDc DEAD-like helica 99.4 3.6E-12 7.9E-17 127.6 12.9 136 305-466 1-144 (144)
117 PRK05298 excinuclease ABC subu 99.4 5.4E-10 1.2E-14 140.8 34.5 123 607-735 429-556 (652)
118 PRK12900 secA preprotein trans 99.4 8.9E-11 1.9E-15 146.6 26.2 118 606-728 580-705 (1025)
119 KOG0351 ATP-dependent DNA heli 99.3 1.7E-11 3.7E-16 155.7 19.1 313 284-733 263-591 (941)
120 PF11496 HDA2-3: Class II hist 99.3 1.9E-11 4.1E-16 138.4 17.2 216 532-749 4-258 (297)
121 smart00490 HELICc helicase sup 99.3 2.9E-12 6.4E-17 116.6 8.3 81 639-722 2-82 (82)
122 TIGR01967 DEAH_box_HrpA ATP-de 99.3 7.2E-11 1.6E-15 153.9 23.8 110 623-740 278-408 (1283)
123 PRK12899 secA preprotein trans 99.3 4E-10 8.8E-15 140.6 28.7 119 606-729 550-676 (970)
124 KOG0952 DNA/RNA helicase MER3/ 99.3 9.4E-11 2E-15 143.9 22.3 309 299-739 121-494 (1230)
125 PRK11131 ATP-dependent RNA hel 99.3 1.2E-10 2.7E-15 151.2 24.7 109 623-739 285-414 (1294)
126 COG1203 CRISPR-associated heli 99.3 1.5E-10 3.3E-15 147.7 22.9 355 284-752 194-568 (733)
127 KOG0327 Translation initiation 99.3 5.9E-11 1.3E-15 132.7 16.2 312 286-737 49-371 (397)
128 PRK12326 preprotein translocas 99.3 7.1E-10 1.5E-14 135.3 26.5 120 606-730 409-543 (764)
129 KOG0337 ATP-dependent RNA heli 99.2 5.3E-11 1.2E-15 133.5 12.7 312 285-736 43-368 (529)
130 cd00268 DEADc DEAD-box helicas 99.2 4.9E-10 1.1E-14 121.2 15.5 153 285-467 21-185 (203)
131 PF00270 DEAD: DEAD/DEAH box h 99.2 3.2E-10 7E-15 118.6 13.4 155 288-472 2-167 (169)
132 PRK13103 secA preprotein trans 99.1 3.1E-09 6.8E-14 132.7 23.9 121 605-730 430-587 (913)
133 KOG0353 ATP-dependent DNA heli 99.1 1.5E-09 3.3E-14 119.4 17.7 298 284-715 93-405 (695)
134 KOG0352 ATP-dependent DNA heli 99.1 9E-09 1.9E-13 115.6 21.7 318 288-731 23-359 (641)
135 TIGR01407 dinG_rel DnaQ family 99.1 4.5E-09 9.8E-14 137.0 21.5 86 282-368 242-333 (850)
136 COG0556 UvrB Helicase subunit 99.1 1.1E-07 2.3E-12 110.5 29.8 132 613-748 432-571 (663)
137 PRK12903 secA preprotein trans 99.1 2.8E-08 6.1E-13 123.1 26.4 120 606-730 408-535 (925)
138 KOG0951 RNA helicase BRR2, DEA 99.0 6.9E-09 1.5E-13 129.3 19.8 72 648-723 607-689 (1674)
139 COG1110 Reverse gyrase [DNA re 98.9 9.8E-08 2.1E-12 118.1 24.0 126 285-440 82-215 (1187)
140 PF13872 AAA_34: P-loop contai 98.9 2.2E-08 4.8E-13 111.5 13.9 238 276-550 27-302 (303)
141 TIGR00596 rad1 DNA repair prot 98.8 1.4E-07 3.1E-12 119.7 20.5 42 605-646 267-317 (814)
142 CHL00122 secA preprotein trans 98.8 2.9E-07 6.2E-12 115.1 22.4 84 606-693 406-490 (870)
143 KOG0947 Cytoplasmic exosomal R 98.8 9.6E-08 2.1E-12 116.8 15.5 168 271-500 283-458 (1248)
144 KOG1244 Predicted transcriptio 98.7 2.4E-09 5.1E-14 113.2 0.7 51 49-99 279-332 (336)
145 PF00385 Chromo: Chromo (CHRro 98.7 5.3E-09 1.1E-13 88.3 2.0 49 193-241 2-54 (55)
146 COG1198 PriA Primosomal protei 98.7 1.5E-06 3.3E-11 108.4 23.5 368 284-735 197-604 (730)
147 PRK12902 secA preprotein trans 98.7 1.7E-06 3.6E-11 108.2 23.1 85 606-694 421-506 (939)
148 COG0610 Type I site-specific r 98.7 5.1E-07 1.1E-11 117.9 19.1 139 303-470 272-417 (962)
149 PRK12901 secA preprotein trans 98.6 3.7E-06 7.9E-11 106.1 24.7 120 606-730 610-737 (1112)
150 PF06465 DUF1087: Domain of Un 98.6 4.5E-08 9.7E-13 83.3 5.2 42 863-904 21-62 (66)
151 COG4581 Superfamily II RNA hel 98.6 1.2E-06 2.5E-11 111.8 20.1 157 282-498 116-282 (1041)
152 TIGR00604 rad3 DNA repair heli 98.6 4.9E-06 1.1E-10 106.8 24.4 74 281-354 6-82 (705)
153 PRK07246 bifunctional ATP-depe 98.6 1E-05 2.2E-10 104.7 27.0 88 613-706 636-725 (820)
154 KOG4299 PHD Zn-finger protein 98.5 2.6E-08 5.6E-13 117.9 1.6 49 51-99 253-306 (613)
155 PRK08074 bifunctional ATP-depe 98.5 1.8E-05 3.9E-10 104.2 27.2 90 280-369 252-347 (928)
156 KOG0329 ATP-dependent RNA heli 98.4 4E-06 8.7E-11 89.0 14.4 45 681-725 302-346 (387)
157 COG1199 DinG Rad3-related DNA 98.4 2.6E-05 5.7E-10 99.8 24.6 104 620-728 475-611 (654)
158 KOG0948 Nuclear exosomal RNA h 98.4 1.4E-05 3.1E-10 96.0 19.5 139 284-465 128-275 (1041)
159 TIGR03117 cas_csf4 CRISPR-asso 98.4 0.00012 2.7E-09 91.0 28.4 79 290-368 2-87 (636)
160 KOG1513 Nuclear helicase MOP-3 98.4 3.1E-05 6.8E-10 93.3 22.0 241 276-552 256-538 (1300)
161 PRK15483 type III restriction- 98.3 6.1E-06 1.3E-10 105.1 15.8 143 305-467 60-239 (986)
162 KOG0949 Predicted helicase, DE 98.3 9.5E-05 2.1E-09 91.5 25.1 160 287-479 513-682 (1330)
163 PF02399 Herpes_ori_bp: Origin 98.3 3.3E-05 7.2E-10 96.0 21.4 114 607-731 266-385 (824)
164 KOG0922 DEAH-box RNA helicase 98.3 5.7E-05 1.2E-09 91.1 21.3 108 626-738 260-392 (674)
165 cd00024 CHROMO Chromatin organ 98.3 4.6E-07 1E-11 76.3 2.4 49 193-241 4-54 (55)
166 PRK11747 dinG ATP-dependent DN 98.2 0.00018 4E-09 91.9 26.3 89 612-706 522-616 (697)
167 KOG0920 ATP-dependent RNA heli 98.2 8.9E-05 1.9E-09 94.1 22.5 129 608-742 395-550 (924)
168 KOG0825 PHD Zn-finger protein 98.2 6.2E-07 1.4E-11 106.8 2.1 48 51-98 215-266 (1134)
169 COG1643 HrpA HrpA-like helicas 98.2 7.3E-05 1.6E-09 95.1 20.1 111 624-739 259-390 (845)
170 KOG0924 mRNA splicing factor A 98.1 7.1E-05 1.5E-09 89.3 17.1 94 648-744 597-705 (1042)
171 PF00628 PHD: PHD-finger; Int 98.0 1.5E-06 3.3E-11 72.0 1.1 44 53-96 1-49 (51)
172 smart00298 CHROMO Chromatin or 98.0 2.1E-06 4.6E-11 72.2 1.9 49 193-241 3-52 (55)
173 PF07652 Flavi_DEAD: Flaviviru 98.0 2.7E-05 5.8E-10 77.9 9.9 130 302-466 2-136 (148)
174 KOG0349 Putative DEAD-box RNA 98.0 1.6E-05 3.5E-10 90.0 8.3 95 624-721 505-602 (725)
175 smart00488 DEXDc2 DEAD-like he 98.0 4.4E-05 9.6E-10 87.3 11.8 72 284-355 7-84 (289)
176 smart00489 DEXDc3 DEAD-like he 98.0 4.4E-05 9.6E-10 87.3 11.8 72 284-355 7-84 (289)
177 TIGR02562 cas3_yersinia CRISPR 98.0 0.0032 7E-08 80.8 28.9 189 287-475 410-643 (1110)
178 COG0653 SecA Preprotein transl 97.9 0.0013 2.8E-08 82.8 24.9 122 605-732 410-542 (822)
179 PF13871 Helicase_C_4: Helicas 97.9 2E-05 4.3E-10 88.0 8.0 90 665-757 52-149 (278)
180 PF00385 Chromo: Chromo (CHRro 97.8 2.5E-06 5.4E-11 72.0 -1.6 54 101-173 2-55 (55)
181 smart00249 PHD PHD zinc finger 97.8 1.5E-05 3.3E-10 64.3 3.1 43 53-95 1-47 (47)
182 cd04718 BAH_plant_2 BAH, or Br 97.8 1.7E-05 3.7E-10 79.2 3.5 29 72-100 1-29 (148)
183 KOG0950 DNA polymerase theta/e 97.8 0.00065 1.4E-08 84.9 17.8 153 285-470 223-391 (1008)
184 cd00024 CHROMO Chromatin organ 97.7 1.4E-05 3E-10 67.3 1.1 51 101-172 4-54 (55)
185 KOG0953 Mitochondrial RNA heli 97.6 0.00015 3.2E-09 85.3 8.6 99 622-724 356-464 (700)
186 KOG0923 mRNA splicing factor A 97.6 0.0021 4.5E-08 77.2 17.8 84 649-740 507-610 (902)
187 PF13086 AAA_11: AAA domain; P 97.6 0.00041 8.9E-09 76.2 11.6 66 285-354 1-75 (236)
188 COG5034 TNG2 Chromatin remodel 97.5 4.3E-05 9.3E-10 81.5 2.7 47 48-97 218-269 (271)
189 KOG0957 PHD finger protein [Ge 97.5 3.2E-05 6.8E-10 88.6 1.4 49 48-96 541-596 (707)
190 KOG1512 PHD Zn-finger protein 97.4 7.8E-05 1.7E-09 80.0 2.2 51 44-96 307-361 (381)
191 KOG1973 Chromatin remodeling p 97.4 7.4E-05 1.6E-09 84.4 2.0 45 51-97 219-267 (274)
192 KOG0925 mRNA splicing factor A 97.3 0.0051 1.1E-07 71.6 16.3 62 679-742 315-393 (699)
193 KOG2748 Uncharacterized conser 97.3 4.4E-05 9.6E-10 84.7 -1.0 38 102-155 13-50 (369)
194 PF07517 SecA_DEAD: SecA DEAD- 97.3 0.0033 7.1E-08 70.5 13.4 122 283-440 75-209 (266)
195 KOG0926 DEAH-box RNA helicase 97.3 0.00053 1.1E-08 83.5 7.5 66 667-735 620-703 (1172)
196 KOG0954 PHD finger protein [Ge 97.1 0.00025 5.5E-09 85.3 2.1 90 50-159 270-365 (893)
197 smart00298 CHROMO Chromatin or 97.0 0.00035 7.5E-09 58.7 1.7 36 131-173 18-53 (55)
198 PRK10536 hypothetical protein; 97.0 0.0044 9.5E-08 68.7 10.5 150 286-470 60-216 (262)
199 KOG0955 PHD finger protein BR1 96.9 0.0007 1.5E-08 87.2 4.0 62 49-115 217-283 (1051)
200 COG5141 PHD zinc finger-contai 96.8 0.00053 1.1E-08 78.8 2.0 69 43-116 185-258 (669)
201 KOG1473 Nucleosome remodeling 96.8 0.00057 1.2E-08 85.6 2.3 47 51-97 344-390 (1414)
202 KOG4443 Putative transcription 96.8 0.00063 1.4E-08 81.6 2.2 48 49-96 66-116 (694)
203 KOG4150 Predicted ATP-dependen 96.7 0.0081 1.8E-07 70.8 10.9 133 606-743 507-647 (1034)
204 KOG1245 Chromatin remodeling c 96.7 0.00039 8.4E-09 93.1 -0.3 51 49-99 1106-1159(1404)
205 COG3587 Restriction endonuclea 96.7 0.0063 1.4E-07 75.5 9.9 81 678-758 484-572 (985)
206 PF02562 PhoH: PhoH-like prote 96.5 0.013 2.9E-07 63.2 10.1 149 286-471 5-160 (205)
207 KOG1911 Heterochromatin-associ 96.5 0.0026 5.7E-08 72.1 4.5 57 190-246 47-103 (270)
208 KOG4323 Polycomb-like PHD Zn-f 96.3 0.0013 2.8E-08 77.4 0.9 52 52-103 169-229 (464)
209 PF13401 AAA_22: AAA domain; P 96.2 0.005 1.1E-07 61.4 4.3 35 430-466 89-125 (131)
210 KOG1802 RNA helicase nonsense 96.2 0.008 1.7E-07 72.4 6.5 77 284-366 409-486 (935)
211 KOG0956 PHD finger protein AF1 96.1 0.0026 5.6E-08 76.2 1.7 84 53-154 7-98 (900)
212 PF13307 Helicase_C_2: Helicas 96.0 0.013 2.8E-07 61.5 6.8 81 621-706 6-92 (167)
213 PRK14873 primosome assembly pr 96.0 0.038 8.2E-07 70.1 11.6 125 313-466 169-303 (665)
214 PF09848 DUF2075: Uncharacteri 95.9 0.027 5.9E-07 66.6 9.6 45 307-351 4-49 (352)
215 KOG1131 RNA polymerase II tran 95.9 0.015 3.3E-07 68.3 7.1 66 277-342 8-75 (755)
216 KOG2748 Uncharacterized conser 95.9 0.0064 1.4E-07 68.0 3.5 50 192-242 11-60 (369)
217 PF13604 AAA_30: AAA domain; P 95.7 0.11 2.4E-06 56.0 12.4 58 285-345 1-58 (196)
218 COG0553 HepA Superfamily II DN 95.5 0.0053 1.2E-07 81.4 1.8 179 285-488 84-289 (866)
219 TIGR00376 DNA helicase, putati 95.3 0.071 1.5E-06 67.8 10.7 75 284-364 156-231 (637)
220 KOG1803 DNA helicase [Replicat 95.1 0.035 7.6E-07 67.1 6.4 64 284-351 184-248 (649)
221 TIGR01448 recD_rel helicase, p 94.6 0.25 5.3E-06 63.9 12.7 65 283-351 321-386 (720)
222 cd00009 AAA The AAA+ (ATPases 94.6 0.29 6.3E-06 48.7 10.9 42 304-346 19-60 (151)
223 PLN03025 replication factor C 94.3 0.52 1.1E-05 54.9 13.6 27 305-331 35-61 (319)
224 KOG0951 RNA helicase BRR2, DEA 94.1 0.13 2.8E-06 66.6 8.2 110 300-444 1155-1269(1674)
225 PF13831 PHD_2: PHD-finger; PD 93.9 0.012 2.5E-07 45.0 -0.7 33 62-96 3-36 (36)
226 PRK04296 thymidine kinase; Pro 93.9 0.16 3.6E-06 54.4 7.7 34 307-341 5-38 (190)
227 KOG1132 Helicase of the DEAD s 93.9 0.27 5.8E-06 62.0 10.3 81 284-364 20-142 (945)
228 PF12340 DUF3638: Protein of u 93.8 0.13 2.8E-06 56.3 6.6 73 282-355 20-92 (229)
229 PF00249 Myb_DNA-binding: Myb- 93.6 0.062 1.4E-06 43.9 3.0 29 1082-1110 2-30 (48)
230 TIGR01447 recD exodeoxyribonuc 93.5 0.49 1.1E-05 59.5 11.9 54 288-345 148-205 (586)
231 PRK07003 DNA polymerase III su 93.3 0.78 1.7E-05 58.3 13.1 42 290-331 21-65 (830)
232 PRK09112 DNA polymerase III su 93.2 0.47 1E-05 56.0 10.6 42 290-331 28-72 (351)
233 PRK12402 replication factor C 93.0 0.53 1.2E-05 55.0 10.7 40 293-332 23-64 (337)
234 KOG1911 Heterochromatin-associ 92.9 0.05 1.1E-06 61.8 1.9 25 131-155 64-89 (270)
235 PRK14956 DNA polymerase III su 92.9 0.49 1.1E-05 57.5 10.2 42 290-331 23-67 (484)
236 TIGR02881 spore_V_K stage V sp 92.8 0.23 5E-06 56.1 7.1 28 304-331 42-69 (261)
237 KOG0383 Predicted helicase [Ge 92.6 0.048 1E-06 68.2 1.4 71 50-152 176-246 (696)
238 COG3421 Uncharacterized protei 92.6 0.32 7E-06 58.8 7.9 38 310-347 3-41 (812)
239 PRK12723 flagellar biosynthesi 92.4 1.2 2.5E-05 53.2 12.5 55 428-482 254-313 (388)
240 PRK06526 transposase; Provisio 92.4 0.67 1.4E-05 52.2 9.9 53 292-353 90-142 (254)
241 PRK10875 recD exonuclease V su 92.4 0.36 7.8E-06 60.9 8.5 57 286-346 153-212 (615)
242 smart00717 SANT SANT SWI3, AD 92.2 0.14 3.1E-06 41.1 3.2 30 1082-1111 2-31 (49)
243 KOG1133 Helicase of the DEAD s 92.1 5.5 0.00012 49.6 17.4 82 625-707 630-721 (821)
244 smart00382 AAA ATPases associa 92.0 0.49 1.1E-05 46.5 7.6 44 304-348 2-45 (148)
245 PRK12323 DNA polymerase III su 91.9 1.1 2.4E-05 56.2 11.8 26 306-331 40-65 (700)
246 PRK07764 DNA polymerase III su 91.8 11 0.00023 49.6 21.2 25 307-331 40-64 (824)
247 cd00167 SANT 'SWI3, ADA2, N-Co 91.8 0.16 3.4E-06 40.1 3.0 29 1083-1111 1-29 (45)
248 TIGR03015 pepcterm_ATPase puta 91.5 1.3 2.8E-05 50.0 11.2 43 287-329 25-68 (269)
249 PF15446 zf-PHD-like: PHD/FYVE 90.9 0.16 3.6E-06 51.8 2.7 34 63-96 124-175 (175)
250 PRK05703 flhF flagellar biosyn 90.9 2.5 5.5E-05 51.2 13.4 56 428-483 299-359 (424)
251 PRK08181 transposase; Validate 90.8 1.7 3.8E-05 49.2 11.1 53 286-339 88-140 (269)
252 PRK14960 DNA polymerase III su 90.7 2.2 4.8E-05 53.7 12.6 37 294-330 24-63 (702)
253 TIGR03420 DnaA_homol_Hda DnaA 90.5 1.4 3E-05 48.4 9.9 42 303-346 37-78 (226)
254 TIGR02880 cbbX_cfxQ probable R 90.5 0.42 9.1E-06 54.7 5.9 37 304-340 58-97 (284)
255 PRK14949 DNA polymerase III su 90.1 1.9 4.2E-05 55.9 11.7 41 291-331 22-65 (944)
256 CHL00181 cbbX CbbX; Provisiona 90.1 0.51 1.1E-05 54.1 6.2 28 304-331 59-86 (287)
257 COG1875 NYN ribonuclease and A 90.1 1.2 2.6E-05 51.4 8.9 71 272-344 214-287 (436)
258 PRK07994 DNA polymerase III su 89.9 1.5 3.3E-05 55.5 10.6 42 290-331 21-65 (647)
259 KOG0989 Replication factor C, 89.8 2 4.2E-05 48.7 10.1 43 289-331 40-84 (346)
260 PRK00440 rfc replication facto 89.7 3.8 8.2E-05 47.4 13.2 26 306-331 40-65 (319)
261 PF05876 Terminase_GpA: Phage 89.6 0.48 1E-05 59.4 6.0 167 284-477 15-190 (557)
262 PRK05707 DNA polymerase III su 89.5 1.6 3.5E-05 51.0 9.8 47 285-331 3-49 (328)
263 PRK07940 DNA polymerase III su 89.5 1.7 3.7E-05 52.1 10.1 26 306-331 38-63 (394)
264 PF15446 zf-PHD-like: PHD/FYVE 89.4 0.17 3.7E-06 51.6 1.4 47 53-99 1-61 (175)
265 PF06862 DUF1253: Protein of u 89.4 4.2 9E-05 49.1 13.2 125 609-735 282-414 (442)
266 PRK14961 DNA polymerase III su 89.3 2.3 5E-05 50.6 11.1 41 290-330 21-64 (363)
267 KOG0457 Histone acetyltransfer 89.0 0.27 5.9E-06 57.3 2.8 31 1081-1111 72-102 (438)
268 PRK06645 DNA polymerase III su 89.0 2 4.3E-05 53.1 10.4 42 290-331 26-70 (507)
269 PRK14958 DNA polymerase III su 88.9 3.6 7.8E-05 51.1 12.7 42 290-331 21-65 (509)
270 PRK08084 DNA replication initi 88.6 3.1 6.7E-05 46.3 10.9 28 304-331 45-72 (235)
271 PHA02544 44 clamp loader, smal 88.6 3.3 7.2E-05 48.0 11.7 39 429-467 101-141 (316)
272 PRK08691 DNA polymerase III su 88.4 5 0.00011 51.0 13.5 41 291-331 22-65 (709)
273 PF00249 Myb_DNA-binding: Myb- 88.2 0.99 2.1E-05 36.8 4.9 42 969-1012 4-46 (48)
274 KOG4299 PHD Zn-finger protein 88.2 0.31 6.7E-06 59.3 2.7 47 51-97 47-94 (613)
275 smart00491 HELICc2 helicase su 88.0 1.8 4E-05 44.1 7.9 54 652-706 23-80 (142)
276 PRK08116 hypothetical protein; 87.9 3.6 7.9E-05 46.7 11.1 44 304-348 114-157 (268)
277 PHA02533 17 large terminase pr 87.9 2.8 6.1E-05 52.3 10.9 55 284-342 58-113 (534)
278 PRK14957 DNA polymerase III su 87.8 3.2 6.9E-05 51.7 11.2 39 292-330 23-64 (546)
279 PRK14962 DNA polymerase III su 87.6 3.1 6.7E-05 51.1 10.9 24 307-330 39-62 (472)
280 PRK08769 DNA polymerase III su 87.5 4.7 0.0001 46.9 11.7 48 285-332 4-54 (319)
281 PF13177 DNA_pol3_delta2: DNA 87.4 4.1 8.8E-05 42.5 10.2 44 290-333 2-48 (162)
282 PRK08451 DNA polymerase III su 87.3 4.5 9.8E-05 50.2 12.0 40 292-331 21-63 (535)
283 cd00167 SANT 'SWI3, ADA2, N-Co 87.1 1.3 2.9E-05 34.7 5.0 42 969-1012 2-43 (45)
284 PRK11889 flhF flagellar biosyn 86.8 5.3 0.00012 47.5 11.6 36 305-341 242-277 (436)
285 KOG4443 Putative transcription 86.8 0.21 4.6E-06 60.7 0.3 58 51-108 18-86 (694)
286 PRK14955 DNA polymerase III su 86.8 6.2 0.00013 47.6 12.7 42 290-331 21-65 (397)
287 KOG1805 DNA replication helica 86.8 2.4 5.3E-05 54.3 9.3 161 285-468 669-831 (1100)
288 PRK09111 DNA polymerase III su 86.6 4.8 0.0001 50.9 12.0 42 290-331 29-73 (598)
289 PRK14952 DNA polymerase III su 86.5 5 0.00011 50.5 12.0 42 290-331 18-62 (584)
290 PRK07471 DNA polymerase III su 86.3 4.5 9.8E-05 48.0 11.0 44 289-332 23-69 (365)
291 PF13173 AAA_14: AAA domain 86.3 4.9 0.00011 40.0 9.8 26 304-329 2-27 (128)
292 COG1200 RecG RecG-like helicas 86.2 10 0.00022 47.6 14.0 96 606-704 293-393 (677)
293 TIGR00595 priA primosomal prot 86.1 4.6 9.9E-05 50.2 11.4 95 605-703 6-101 (505)
294 PRK08727 hypothetical protein; 85.7 3.6 7.7E-05 45.7 9.2 27 306-332 43-69 (233)
295 PRK14974 cell division protein 85.5 4.8 0.0001 47.1 10.5 35 306-341 142-176 (336)
296 PRK14964 DNA polymerase III su 85.5 7 0.00015 48.1 12.3 40 292-331 20-62 (491)
297 PRK14959 DNA polymerase III su 85.1 22 0.00048 45.0 16.5 37 294-330 25-64 (624)
298 PF13245 AAA_19: Part of AAA d 84.9 2.4 5.3E-05 38.3 6.1 44 304-347 10-56 (76)
299 TIGR02928 orc1/cdc6 family rep 84.8 3.8 8.3E-05 48.5 9.6 45 286-330 19-66 (365)
300 smart00717 SANT SANT SWI3, AD 84.8 1.7 3.7E-05 34.6 4.7 45 968-1014 3-47 (49)
301 PRK06871 DNA polymerase III su 84.7 6 0.00013 46.2 10.8 47 286-332 3-52 (325)
302 PF13921 Myb_DNA-bind_6: Myb-l 84.7 0.85 1.8E-05 39.0 2.9 41 1084-1129 1-41 (60)
303 PRK14963 DNA polymerase III su 84.7 5.8 0.00012 49.2 11.2 42 290-331 19-63 (504)
304 TIGR02768 TraA_Ti Ti-type conj 84.5 6.3 0.00014 51.4 12.0 59 283-345 350-408 (744)
305 PRK08058 DNA polymerase III su 84.1 5.4 0.00012 46.7 10.2 135 289-465 10-148 (329)
306 PRK14951 DNA polymerase III su 84.1 6.2 0.00013 50.0 11.2 42 290-331 21-65 (618)
307 PRK00149 dnaA chromosomal repl 84.0 6.8 0.00015 48.1 11.4 41 305-345 149-190 (450)
308 PRK14969 DNA polymerase III su 83.9 16 0.00035 45.7 14.7 41 290-330 21-64 (527)
309 PRK05580 primosome assembly pr 83.6 7.3 0.00016 50.3 12.0 95 606-704 172-267 (679)
310 PRK14950 DNA polymerase III su 83.5 7.9 0.00017 49.1 12.1 41 290-330 21-64 (585)
311 TIGR00362 DnaA chromosomal rep 83.5 7.2 0.00016 47.1 11.3 35 306-340 138-173 (405)
312 PHA03333 putative ATPase subun 83.2 8.8 0.00019 48.4 11.7 59 288-347 172-231 (752)
313 PRK14948 DNA polymerase III su 83.0 7.2 0.00016 49.6 11.3 42 290-331 21-65 (620)
314 PRK14087 dnaA chromosomal repl 82.7 6.6 0.00014 48.1 10.5 47 305-351 142-189 (450)
315 PRK05563 DNA polymerase III su 82.6 8.7 0.00019 48.4 11.8 25 307-331 41-65 (559)
316 PRK14953 DNA polymerase III su 82.6 7.6 0.00017 48.0 11.1 41 290-330 21-64 (486)
317 PF00448 SRP54: SRP54-type pro 82.6 4.1 8.9E-05 44.0 7.8 34 307-341 4-37 (196)
318 cd01121 Sms Sms (bacterial rad 82.4 6.5 0.00014 46.8 10.0 52 302-354 80-131 (372)
319 PRK13889 conjugal transfer rel 81.6 8.8 0.00019 51.1 11.7 59 283-345 344-402 (988)
320 PHA03372 DNA packaging termina 81.5 3.4 7.5E-05 51.0 7.3 130 302-465 201-336 (668)
321 TIGR01557 myb_SHAQKYF myb-like 80.8 1.7 3.7E-05 37.0 3.1 29 1080-1108 2-33 (57)
322 TIGR00643 recG ATP-dependent D 80.7 14 0.0003 47.5 12.8 97 606-705 266-367 (630)
323 PRK05642 DNA replication initi 80.7 14 0.00031 41.0 11.5 36 430-465 99-138 (234)
324 PRK06647 DNA polymerase III su 80.6 7.6 0.00017 48.8 10.2 25 307-331 41-65 (563)
325 PRK06893 DNA replication initi 80.4 10 0.00022 41.9 10.2 27 306-332 41-67 (229)
326 COG1198 PriA Primosomal protei 80.2 7.7 0.00017 49.8 10.1 111 536-687 195-306 (730)
327 PRK14722 flhF flagellar biosyn 80.2 19 0.0004 42.9 12.7 40 302-341 135-175 (374)
328 PRK06090 DNA polymerase III su 80.2 12 0.00027 43.5 11.0 48 285-332 3-53 (319)
329 PRK04132 replication factor C 80.0 7.1 0.00015 51.0 9.9 49 428-476 630-679 (846)
330 PRK07133 DNA polymerase III su 80.0 8.7 0.00019 49.3 10.4 41 291-331 24-67 (725)
331 PRK07993 DNA polymerase III su 79.8 8.1 0.00017 45.4 9.5 47 285-331 2-51 (334)
332 PF00580 UvrD-helicase: UvrD/R 79.7 2.9 6.3E-05 47.9 5.9 54 286-345 1-57 (315)
333 PRK05896 DNA polymerase III su 79.7 15 0.00033 46.2 12.2 40 292-331 23-65 (605)
334 PF06733 DEAD_2: DEAD_2; Inte 79.6 1.3 2.8E-05 46.7 2.6 38 405-442 118-159 (174)
335 PRK06964 DNA polymerase III su 79.3 12 0.00027 43.9 10.8 47 286-332 2-49 (342)
336 PRK10917 ATP-dependent DNA hel 79.3 10 0.00022 49.1 11.1 97 606-705 292-393 (681)
337 PF14446 Prok-RING_1: Prokaryo 79.2 1.1 2.3E-05 37.4 1.4 30 51-80 5-38 (54)
338 PRK09183 transposase/IS protei 79.0 11 0.00023 42.7 9.9 46 290-340 92-137 (259)
339 PHA03368 DNA packaging termina 78.7 9 0.0002 48.1 9.6 128 304-465 254-389 (738)
340 PF05621 TniB: Bacterial TniB 78.7 15 0.00032 42.2 10.7 45 422-466 139-189 (302)
341 PRK14954 DNA polymerase III su 78.4 11 0.00024 47.8 10.7 42 290-331 21-65 (620)
342 TIGR03345 VI_ClpV1 type VI sec 78.4 9.2 0.0002 50.6 10.4 41 290-330 192-234 (852)
343 PRK11054 helD DNA helicase IV; 78.2 9.9 0.00022 49.0 10.4 86 284-377 195-286 (684)
344 PRK14088 dnaA chromosomal repl 78.1 11 0.00024 46.0 10.4 37 305-341 131-168 (440)
345 PRK14965 DNA polymerase III su 78.1 23 0.00051 44.8 13.5 25 307-331 41-65 (576)
346 PRK14086 dnaA chromosomal repl 77.5 15 0.00033 46.2 11.3 43 306-348 316-359 (617)
347 COG1484 DnaC DNA replication p 77.5 7.2 0.00016 43.9 7.9 65 288-353 89-153 (254)
348 KOG1246 DNA-binding protein ju 77.2 1.7 3.7E-05 58.0 3.2 49 50-98 154-204 (904)
349 PRK04195 replication factor C 76.6 20 0.00044 44.3 12.2 42 286-328 18-63 (482)
350 PF01695 IstB_IS21: IstB-like 76.5 3.3 7.1E-05 44.0 4.6 47 302-353 45-91 (178)
351 KOG0957 PHD finger protein [Ge 76.5 1.7 3.6E-05 51.2 2.4 62 51-116 119-193 (707)
352 KOG1512 PHD Zn-finger protein 76.3 0.75 1.6E-05 50.3 -0.3 59 52-110 259-334 (381)
353 KOG0991 Replication factor C, 76.3 5.3 0.00012 43.5 5.9 28 304-331 48-75 (333)
354 PRK00771 signal recognition pa 76.2 12 0.00025 45.6 9.7 36 305-340 96-131 (437)
355 PF12861 zf-Apc11: Anaphase-pr 76.2 0.95 2E-05 41.5 0.3 43 54-98 35-80 (85)
356 TIGR00678 holB DNA polymerase 76.1 24 0.00052 37.5 11.2 27 305-331 15-41 (188)
357 KOG0952 DNA/RNA helicase MER3/ 76.0 2.9 6.4E-05 54.1 4.6 112 301-443 940-1061(1230)
358 PRK13342 recombination factor 75.4 14 0.00031 44.7 10.3 24 305-328 37-60 (413)
359 PRK12422 chromosomal replicati 75.3 10 0.00023 46.2 9.0 36 305-341 142-177 (445)
360 smart00492 HELICc3 helicase su 74.5 15 0.00033 37.4 8.6 52 652-706 26-79 (141)
361 KOG3612 PHD Zn-finger protein 74.3 2.2 4.8E-05 51.2 2.8 51 49-99 58-109 (588)
362 KOG1473 Nucleosome remodeling 74.1 0.61 1.3E-05 59.8 -1.9 51 49-99 426-480 (1414)
363 COG0470 HolB ATPase involved i 73.9 10 0.00023 43.8 8.4 30 303-332 22-52 (325)
364 PRK00411 cdc6 cell division co 73.8 16 0.00034 43.8 10.1 46 287-332 35-83 (394)
365 cd01120 RecA-like_NTPases RecA 73.5 25 0.00055 35.5 10.3 37 307-344 2-38 (165)
366 COG3973 Superfamily I DNA and 73.3 6.2 0.00013 48.5 6.1 62 285-351 212-278 (747)
367 PRK06731 flhF flagellar biosyn 73.0 28 0.00061 39.6 11.2 47 303-350 74-124 (270)
368 KOG4628 Predicted E3 ubiquitin 73.0 2 4.2E-05 49.8 1.9 44 52-98 230-276 (348)
369 KOG0384 Chromodomain-helicase 72.9 1.2 2.6E-05 58.2 0.2 25 131-155 300-324 (1373)
370 COG3267 ExeA Type II secretory 72.6 16 0.00035 40.7 8.6 52 301-354 47-105 (269)
371 PRK12727 flagellar biosynthesi 72.2 45 0.00097 41.4 13.2 38 303-340 349-387 (559)
372 PTZ00293 thymidine kinase; Pro 71.9 11 0.00024 41.0 7.2 36 307-343 7-42 (211)
373 PRK07399 DNA polymerase III su 71.7 17 0.00038 42.2 9.4 43 290-332 9-54 (314)
374 PF00004 AAA: ATPase family as 71.7 9.4 0.0002 37.4 6.3 35 307-345 1-35 (132)
375 TIGR03689 pup_AAA proteasome A 71.5 12 0.00025 46.5 8.1 29 302-330 214-242 (512)
376 PTZ00112 origin recognition co 71.3 31 0.00067 45.1 11.7 45 286-330 759-807 (1164)
377 PRK10865 protein disaggregatio 70.6 14 0.0003 49.1 9.2 37 294-330 187-225 (857)
378 PLN03212 Transcription repress 70.5 8.5 0.00018 42.4 5.9 27 1082-1109 79-105 (249)
379 PLN03212 Transcription repress 70.5 3.8 8.2E-05 45.0 3.3 28 1081-1108 25-52 (249)
380 PRK06305 DNA polymerase III su 69.7 24 0.00051 43.3 10.3 42 290-331 22-66 (451)
381 COG1419 FlhF Flagellar GTP-bin 69.6 60 0.0013 38.8 13.0 72 412-485 267-342 (407)
382 PF01393 Chromo_shadow: Chromo 69.6 2 4.3E-05 36.7 0.7 26 192-217 3-28 (58)
383 cd01124 KaiC KaiC is a circadi 69.5 12 0.00026 39.5 6.9 48 307-355 2-49 (187)
384 COG2256 MGS1 ATPase related to 69.5 18 0.00038 42.8 8.5 24 304-327 48-71 (436)
385 PRK11823 DNA repair protein Ra 69.5 13 0.00028 45.5 8.0 62 293-355 68-130 (446)
386 CHL00095 clpC Clp protease ATP 69.3 2.3E+02 0.005 37.7 20.0 25 307-331 542-566 (821)
387 PRK14873 primosome assembly pr 68.6 21 0.00046 45.8 9.9 94 606-703 170-265 (665)
388 PRK07952 DNA replication prote 68.4 16 0.00035 40.9 7.8 62 288-354 79-144 (244)
389 PRK13826 Dtr system oriT relax 67.5 43 0.00094 45.3 12.6 59 283-345 379-437 (1102)
390 PF11793 FANCL_C: FANCL C-term 67.3 0.53 1.2E-05 41.8 -3.3 47 52-98 3-64 (70)
391 cd03115 SRP The signal recogni 67.3 34 0.00075 35.7 9.8 35 307-341 3-37 (173)
392 PRK06835 DNA replication prote 66.6 13 0.00029 43.5 6.9 49 284-332 159-211 (329)
393 PRK08699 DNA polymerase III su 66.5 46 0.001 38.9 11.4 46 286-331 2-48 (325)
394 TIGR01557 myb_SHAQKYF myb-like 66.0 14 0.0003 31.5 5.1 48 968-1015 5-55 (57)
395 PRK12724 flagellar biosynthesi 65.6 33 0.00072 41.4 10.0 22 307-328 226-247 (432)
396 PRK13341 recombination factor 65.5 20 0.00042 46.6 8.8 24 305-328 53-76 (725)
397 PF00308 Bac_DnaA: Bacterial d 65.3 57 0.0012 35.8 11.3 38 428-465 97-138 (219)
398 TIGR02639 ClpA ATP-dependent C 64.9 39 0.00084 44.2 11.5 29 303-331 202-230 (731)
399 PF04364 DNA_pol3_chi: DNA pol 64.7 19 0.00041 36.5 6.8 79 610-706 15-97 (137)
400 PLN03091 hypothetical protein; 64.6 6.4 0.00014 46.7 3.8 28 1081-1108 14-41 (459)
401 TIGR02397 dnaX_nterm DNA polym 64.5 49 0.0011 38.9 11.5 26 306-331 38-63 (355)
402 PRK14971 DNA polymerase III su 64.3 89 0.0019 40.0 14.1 40 291-330 23-65 (614)
403 PRK05973 replicative DNA helic 64.2 18 0.00039 40.3 7.1 58 297-355 57-114 (237)
404 TIGR00708 cobA cob(I)alamin ad 64.2 9.4 0.0002 40.3 4.6 60 421-480 90-153 (173)
405 PRK05986 cob(I)alamin adenolsy 63.9 26 0.00056 37.6 7.9 63 421-483 108-174 (191)
406 KOG4218 Nuclear hormone recept 63.8 2.8 6E-05 47.3 0.6 66 47-112 11-95 (475)
407 CHL00206 ycf2 Ycf2; Provisiona 63.6 17 0.00037 50.9 7.9 43 302-348 1628-1670(2281)
408 PRK10867 signal recognition pa 63.6 39 0.00085 41.1 10.3 35 307-341 103-137 (433)
409 PF13901 DUF4206: Domain of un 63.5 5.2 0.00011 43.4 2.7 39 50-97 151-197 (202)
410 smart00300 ChSh Chromo Shadow 63.0 5.2 0.00011 34.5 2.1 24 192-215 7-30 (61)
411 CHL00095 clpC Clp protease ATP 62.1 27 0.00058 46.3 9.3 28 303-330 199-226 (821)
412 PRK10865 protein disaggregatio 61.9 4.7E+02 0.01 35.0 20.7 26 306-331 600-625 (857)
413 TIGR03346 chaperone_ClpB ATP-d 61.7 28 0.00061 46.3 9.5 38 293-330 181-220 (852)
414 TIGR02640 gas_vesic_GvpN gas v 61.7 19 0.00041 40.7 7.0 50 288-341 5-54 (262)
415 KOG2543 Origin recognition com 61.5 2.8E+02 0.006 33.1 15.9 141 284-468 8-160 (438)
416 TIGR00959 ffh signal recogniti 61.1 38 0.00083 41.2 9.6 35 306-340 101-135 (428)
417 COG1435 Tdk Thymidine kinase [ 60.6 16 0.00034 39.2 5.4 34 429-465 83-118 (201)
418 KOG0048 Transcription factor, 60.5 6.4 0.00014 43.9 2.8 32 1082-1113 10-41 (238)
419 KOG1081 Transcription factor N 60.4 8.5 0.00018 47.1 4.0 46 50-98 88-133 (463)
420 PRK13833 conjugal transfer pro 60.3 17 0.00036 42.5 6.2 47 281-330 124-170 (323)
421 TIGR01074 rep ATP-dependent DN 60.2 29 0.00064 44.8 9.2 65 286-356 2-70 (664)
422 cd00561 CobA_CobO_BtuR ATP:cor 59.3 70 0.0015 33.4 9.9 58 421-478 88-149 (159)
423 KOG0740 AAA+-type ATPase [Post 59.2 17 0.00037 43.6 6.1 48 304-355 186-233 (428)
424 cd00034 ChSh Chromo Shadow Dom 58.9 4.5 9.8E-05 34.0 0.9 22 194-215 2-24 (54)
425 PRK10919 ATP-dependent DNA hel 58.7 16 0.00035 47.1 6.4 65 285-355 2-70 (672)
426 KOG0738 AAA+-type ATPase [Post 58.6 31 0.00066 40.7 7.7 47 305-355 246-292 (491)
427 TIGR01425 SRP54_euk signal rec 58.6 1.1E+02 0.0024 37.1 12.9 34 307-341 103-136 (429)
428 KOG1807 Helicases [Replication 58.4 24 0.00053 44.6 7.2 90 285-380 378-473 (1025)
429 KOG1133 Helicase of the DEAD s 57.7 17 0.00038 45.4 5.9 44 284-327 14-57 (821)
430 KOG1244 Predicted transcriptio 57.3 2.7 5.8E-05 46.1 -0.9 59 50-108 223-299 (336)
431 PF06068 TIP49: TIP49 C-termin 56.8 17 0.00036 42.8 5.3 40 303-344 49-88 (398)
432 PF06745 KaiC: KaiC; InterPro 56.6 18 0.00039 39.7 5.6 55 302-356 17-71 (226)
433 PRK11034 clpA ATP-dependent Cl 56.2 21 0.00046 46.5 6.8 29 303-331 206-234 (758)
434 TIGR00416 sms DNA repair prote 55.7 27 0.00059 42.8 7.3 52 302-354 92-143 (454)
435 PF13639 zf-RING_2: Ring finge 54.6 1.5 3.3E-05 34.9 -2.5 40 52-96 1-44 (44)
436 cd01128 rho_factor Transcripti 54.2 55 0.0012 36.8 8.8 26 302-327 14-39 (249)
437 TIGR01075 uvrD DNA helicase II 54.2 29 0.00062 45.3 7.6 66 285-356 4-73 (715)
438 PF06564 YhjQ: YhjQ protein; 54.1 22 0.00047 39.7 5.5 34 311-345 9-44 (243)
439 PRK10416 signal recognition pa 54.0 1.3E+02 0.0027 35.2 12.1 33 307-340 117-149 (318)
440 PF13832 zf-HC5HC2H_2: PHD-zin 53.9 6 0.00013 38.3 1.0 29 51-79 55-86 (110)
441 CHL00176 ftsH cell division pr 53.6 61 0.0013 41.5 10.1 33 304-340 216-248 (638)
442 PRK14970 DNA polymerase III su 53.6 66 0.0014 38.2 10.1 39 292-330 24-65 (367)
443 PF00437 T2SE: Type II/IV secr 53.4 20 0.00044 40.5 5.4 44 295-339 118-161 (270)
444 PF02606 LpxK: Tetraacyldisacc 53.1 82 0.0018 36.9 10.3 122 314-467 47-189 (326)
445 PRK06995 flhF flagellar biosyn 52.7 83 0.0018 38.9 10.7 33 307-339 259-292 (484)
446 PF13771 zf-HC5HC2H: PHD-like 52.6 6.6 0.00014 36.4 1.1 31 50-80 35-68 (90)
447 PRK11773 uvrD DNA-dependent he 52.5 35 0.00077 44.5 8.1 66 285-356 9-78 (721)
448 TIGR00767 rho transcription te 52.5 52 0.0011 39.5 8.5 31 301-331 165-195 (415)
449 PRK06921 hypothetical protein; 52.3 38 0.00083 38.4 7.3 39 303-341 116-154 (266)
450 KOG0737 AAA+-type ATPase [Post 52.3 21 0.00046 41.7 5.2 50 302-355 125-174 (386)
451 PRK09376 rho transcription ter 52.3 21 0.00045 42.6 5.2 30 302-331 167-196 (416)
452 TIGR03499 FlhF flagellar biosy 52.1 59 0.0013 37.2 8.9 38 304-341 194-232 (282)
453 PRK08939 primosomal protein Dn 52.0 23 0.0005 41.1 5.6 46 293-339 143-190 (306)
454 COG5114 Histone acetyltransfer 52.0 12 0.00026 42.0 3.0 37 1073-1111 57-93 (432)
455 COG4626 Phage terminase-like p 51.7 85 0.0018 38.9 10.3 59 284-342 60-127 (546)
456 PRK05564 DNA polymerase III su 51.5 84 0.0018 36.5 10.2 25 307-331 29-53 (313)
457 COG1066 Sms Predicted ATP-depe 51.5 54 0.0012 39.1 8.3 51 304-356 93-143 (456)
458 TIGR00064 ftsY signal recognit 51.4 1.1E+02 0.0024 34.9 10.9 33 307-340 75-107 (272)
459 TIGR03877 thermo_KaiC_1 KaiC d 51.3 42 0.0009 37.3 7.4 54 301-355 18-71 (237)
460 TIGR02782 TrbB_P P-type conjug 51.1 32 0.00069 39.8 6.6 44 284-330 115-158 (299)
461 COG0552 FtsY Signal recognitio 50.6 82 0.0018 36.7 9.5 121 307-472 142-275 (340)
462 TIGR00580 mfd transcription-re 50.5 74 0.0016 42.6 10.5 96 606-704 482-582 (926)
463 COG0541 Ffh Signal recognition 50.3 64 0.0014 38.8 8.8 113 307-462 103-218 (451)
464 PRK12377 putative replication 50.0 42 0.00091 37.7 7.1 44 304-348 101-144 (248)
465 KOG0780 Signal recognition par 49.5 46 0.00099 39.2 7.2 58 307-365 104-161 (483)
466 cd00984 DnaB_C DnaB helicase C 49.2 24 0.00052 39.0 5.1 48 297-344 6-53 (242)
467 PF05127 Helicase_RecD: Helica 49.0 16 0.00035 38.7 3.4 35 308-342 1-35 (177)
468 TIGR03880 KaiC_arch_3 KaiC dom 48.7 48 0.001 36.3 7.3 52 303-355 15-66 (224)
469 PRK08533 flagellar accessory p 48.6 49 0.0011 36.6 7.4 52 302-354 22-73 (230)
470 PRK06646 DNA polymerase III su 48.6 29 0.00063 35.9 5.1 40 605-644 10-49 (154)
471 PF14061 Mtf2_C: Polycomb-like 48.3 9.4 0.0002 31.1 1.1 22 196-217 27-49 (50)
472 PF03354 Terminase_1: Phage Te 48.1 1.3E+02 0.0027 37.4 11.5 45 420-466 115-162 (477)
473 PLN03208 E3 ubiquitin-protein 47.6 7.5 0.00016 41.4 0.6 50 51-100 18-79 (193)
474 COG0467 RAD55 RecA-superfamily 47.3 48 0.001 37.3 7.2 54 301-355 20-73 (260)
475 PRK08760 replicative DNA helic 47.1 54 0.0012 40.5 8.1 63 293-355 218-280 (476)
476 PRK14723 flhF flagellar biosyn 47.0 83 0.0018 40.9 9.8 36 306-341 187-223 (767)
477 PF01443 Viral_helicase1: Vira 46.8 26 0.00057 38.3 4.9 41 428-471 62-102 (234)
478 PRK14721 flhF flagellar biosyn 46.6 1.6E+02 0.0034 35.9 11.6 54 428-482 269-327 (420)
479 PRK05728 DNA polymerase III su 46.4 36 0.00077 34.8 5.3 83 605-706 10-96 (142)
480 PHA00673 acetyltransferase dom 46.4 29 0.00062 36.0 4.6 44 429-472 88-134 (154)
481 cd00730 rubredoxin Rubredoxin; 46.4 12 0.00026 30.9 1.5 34 65-99 3-44 (50)
482 cd01129 PulE-GspE PulE/GspE Th 46.2 38 0.00081 38.4 6.0 44 285-330 63-106 (264)
483 PF13481 AAA_25: AAA domain; P 46.2 28 0.00061 36.9 4.9 54 303-356 31-93 (193)
484 KOG0780 Signal recognition par 46.2 2.2E+02 0.0047 33.9 11.8 73 604-676 109-185 (483)
485 PRK14712 conjugal transfer nic 46.1 1.1E+02 0.0024 43.1 11.3 59 285-345 835-896 (1623)
486 PRK07276 DNA polymerase III su 45.9 1.3E+02 0.0029 34.6 10.3 47 285-332 2-50 (290)
487 PHA02929 N1R/p28-like protein; 45.8 7.5 0.00016 43.0 0.3 49 50-102 173-229 (238)
488 PF12846 AAA_10: AAA-like doma 45.6 39 0.00085 38.3 6.2 44 304-348 1-44 (304)
489 TIGR03881 KaiC_arch_4 KaiC dom 45.4 66 0.0014 35.3 7.7 54 300-354 16-69 (229)
490 PRK13766 Hef nuclease; Provisi 45.3 3.6E+02 0.0079 35.5 15.9 93 606-705 39-141 (773)
491 COG1474 CDC6 Cdc6-related prot 44.9 2.7E+02 0.0059 33.2 13.2 48 285-332 20-70 (366)
492 PRK10263 DNA translocase FtsK; 44.9 70 0.0015 43.6 8.8 41 303-343 1009-1052(1355)
493 PRK05748 replicative DNA helic 44.8 50 0.0011 40.5 7.3 61 292-352 191-251 (448)
494 PRK10689 transcription-repair 44.5 1.1E+02 0.0023 42.2 10.8 96 606-704 631-731 (1147)
495 PRK13709 conjugal transfer nic 44.5 1.1E+02 0.0023 43.8 10.9 60 284-345 966-1028(1747)
496 TIGR03345 VI_ClpV1 type VI sec 44.1 7.8E+02 0.017 33.0 18.5 25 307-331 599-623 (852)
497 TIGR01243 CDC48 AAA family ATP 43.9 43 0.00093 43.9 6.9 42 303-348 486-527 (733)
498 cd00162 RING RING-finger (Real 43.6 6.4 0.00014 30.5 -0.5 41 54-97 2-43 (45)
499 PF05970 PIF1: PIF1-like helic 42.9 48 0.001 39.5 6.5 60 285-345 1-62 (364)
500 PRK09087 hypothetical protein; 42.7 1.1E+02 0.0025 33.7 9.0 36 430-465 89-125 (226)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=8.9e-175 Score=1569.00 Aligned_cols=926 Identities=42% Similarity=0.727 Sum_probs=758.6
Q ss_pred ccccccccccccCccCCC----Ccccc--------cchhhhhhHhhhhccCCCcccccccchhhHHHHhhcChhHHHHHh
Q 000903 101 DIDKILDCEMRPTVAGDS----DVSKL--------GSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN 168 (1232)
Q Consensus 101 ~iekIL~~R~~p~~~~~~----~~~~~--------~~~~~~~~eYlVKWkg~Sy~h~tW~pe~~L~~~~~~~~~~k~kl~ 168 (1232)
.|+.++++|.++...+.. ..... ..+.....||||||+|+||+||||+|++.|... ..++-+|++
T Consensus 184 ~ie~v~~~r~~~~~~~~~~~~~~i~d~~~p~~~~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~ 260 (1373)
T KOG0384|consen 184 TIERVLDHRGKKGATGSAETEYAIPDKGDPSAVFEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVD 260 (1373)
T ss_pred hhHHHhhhhccccccCCCcccccccccCCccccccccCcchhhhhheeeccccceeccccchHHHHhh---hHHHHHHHH
Confidence 688999998665543311 00100 011144579999999999999999999998643 234446999
Q ss_pred hhhhhcccCCC--CchhhhcCCCCccchhhhhhhccCCCcceeEEeeeccccccccccccCCcCc-cHHHHHHHHhhhhc
Q 000903 169 NFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSR 245 (1232)
Q Consensus 169 ~f~k~~~~~~~--~~e~~~~~~~~~~~verIi~~r~~~~~~eyLVKWkgL~Y~e~tWE~~~~~~~-~~~~i~~~~~~~~~ 245 (1232)
||.++...... -.++...+.++|.+|||||++....+ .+|||||+||||++||||...+|.. .+.+++.|..+...
T Consensus 261 nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~s 339 (1373)
T KOG0384|consen 261 NFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENS 339 (1373)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcc
Confidence 99988543321 12344568899999999999986655 8999999999999999999998864 67778888875432
Q ss_pred cccccCCccCCCCcccccccCCCcccccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH
Q 000903 246 SHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL 325 (1232)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l 325 (1232)
.. .+..-....+.++.|.++..||.|+.|.+||+||++|+|||.++|+++.+||||||||||||+|+|+||
T Consensus 340 k~---------~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl 410 (1373)
T KOG0384|consen 340 KT---------LPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL 410 (1373)
T ss_pred cc---------CCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH
Confidence 21 111122334567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC--CCCeEEEeCCccHHHHHHHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 000903 326 ASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 403 (1232)
Q Consensus 326 ~~l~~~~--~~p~LIV~P~sll~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1232)
.+|+... .||||||||+|++.+|++||..|+ ++|+++|+|+..+|+.|++|+|++.... .
T Consensus 411 ~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~-----------------~ 472 (1373)
T KOG0384|consen 411 SYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNT-----------------K 472 (1373)
T ss_pred HHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCc-----------------c
Confidence 9998854 589999999999999999999999 9999999999999999999999976641 3
Q ss_pred cccccEEEecHHHHhhcccccCCCceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcC
Q 000903 404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1232)
Q Consensus 404 ~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p 483 (1232)
..+|+++||||+++.+|..+|..++|.+++|||||||||..|+++..|..+..+||||+||||+|||+.|||+|||||+|
T Consensus 473 ~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcC
Q 000903 484 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG 563 (1232)
Q Consensus 484 ~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~ 563 (1232)
+.|.++++|...| +..++..+..||..|+||||||+|+||.+.|||+.|.|+.|+||.+|+++|++||++|+.+|.++.
T Consensus 553 ~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~ 631 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA 631 (1373)
T ss_pred CCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC
Confidence 9999999999999 778889999999999999999999999999999999999999999999999999999999998764
Q ss_pred -CcchhHHHHHHHHHHHhCCcccccCCCCCccc------chHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhH
Q 000903 564 -GAQISLINVVMELRKLCCHPYMLEGVEPDIED------TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 636 (1232)
Q Consensus 564 -~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~~------~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ 636 (1232)
++..+++|++|+||||||||||+.+++..+.. .++.++.+|.+||||.+|++||.+|++.||||||||||++|
T Consensus 632 ~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRm 711 (1373)
T KOG0384|consen 632 KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRM 711 (1373)
T ss_pred CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHH
Confidence 44579999999999999999999998865533 24688999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHH
Q 000903 637 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 716 (1232)
Q Consensus 637 ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~g 716 (1232)
||||++||..++|+|.||||++.++.|+++||+||+++|+.|||||||||||+||||++||||||||||||||+|+||++
T Consensus 712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA 791 (1373)
T ss_pred HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHHHHHHHhcccc-------ccCCCHHHHHHHHHhchhhhccccccCC
Q 000903 717 RAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-------AQNINQEELDDIIRYGSKELFADENDEG 789 (1232)
Q Consensus 717 R~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~~v~g~~~-------~~~~~~~el~~ll~~ga~~lf~~~~~~~ 789 (1232)
|||||||++.|.||||||++||||.|+++|++||.|+++||++|. .+.++++||.+||+|||+++|.++++++
T Consensus 792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~ 871 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE 871 (1373)
T ss_pred HHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc
Confidence 999999999999999999999999999999999999999998774 3579999999999999999999987765
Q ss_pred CCccccCCCHHHHHHHhcCCCCCCcccCCCCcchhhhhhhhhhhceechhhHHHHHHHHHHHHHHhhcccCCCccchhhH
Q 000903 790 GKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYW 869 (1232)
Q Consensus 790 ~~~~~~~~~~~~id~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 869 (1232)
.+ +.++|||+||.|++...++.++ -..++.++++|+||+|...|+.+-+ .. +.-.|
T Consensus 872 s~-----~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls~fkvad~~~dd~~~~~---------------~~---~didw 927 (1373)
T KOG0384|consen 872 SK-----FCEMDIDEILERAETRITEESD-FMKASELLSQFKVADIKADDPADLE---------------AE---RDIDW 927 (1373)
T ss_pred cc-----ccccCHHHHHhhcccccccccc-cchhHHHHhhccccccccCChhhhh---------------hh---ccCCh
Confidence 43 5679999999999987665442 3567889999999999986652210 00 12479
Q ss_pred HHHHHHHHHH-----HHHHHhhhcCCCCCCcc--cccccchhhccccccCCCCccccccccccCCCCCCCCCCCCCCCCc
Q 000903 870 EELLKDRYEV-----HKVEEFNALGKGKRSRK--QMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN 942 (1232)
Q Consensus 870 ~~~~~~~~~~-----~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1232)
+.|+++...+ ....+...+...+|.|. +......+. + .+ ++ .++. .. ++. .
T Consensus 928 d~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~--~-~~--~~----~~e~-----~~-------~~~-~ 985 (1373)
T KOG0384|consen 928 DRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG--R-AE--SR----SVEK-----SL-------GKK-G 985 (1373)
T ss_pred hhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc--c-cc--cc----cccc-----cc-------ccc-c
Confidence 9998875432 22233444554554443 322211111 0 00 00 0000 00 000 1
Q ss_pred ccccccCCCCCCCCccccccchhccCCChhHHHHHHHHHHhcCCCCcchhhhc--hhhcCCCHHHHHHHHHHHHHhhhhc
Q 000903 943 KKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYGILFLTHITED 1020 (1232)
Q Consensus 943 ~~~~~~~~~~~~pLte~e~~~l~~~GF~~~~rr~F~~a~~kyG~~~~~~~~i~--~el~~Ks~~Evk~Y~~~F~~~~~e~ 1020 (1232)
+++.+.. ++ ..-.+.||+..+.|+|++++++||.+.+..+.|+ +++..++++++++.+.+....|.++
T Consensus 986 ~~r~r~~------~~----~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~l~~~s~~~~~~l~~~~~~~c~~a 1055 (1373)
T KOG0384|consen 986 KGRWREI------LK----RGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAELVDKSPAELKKLGELLHNACKSA 1055 (1373)
T ss_pred ccccccc------cc----cchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhceeeccCHHHHHHHHHHHHhhhhhh
Confidence 1222211 11 1235679999999999999999999988777777 6788999999999999999999876
Q ss_pred ccCCC----ccc---C----CCcc-------Cc--cchHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccC---C
Q 000903 1021 ITDSP----TFS---D----GVPK-------EG--LRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYP---G 1077 (1232)
Q Consensus 1021 ~~d~~----~~~---~----~i~k-------~~--~k~~~vl~ri~~~~~l~~Kv~~~~~~p~~~~~~~~~~~~~~---~ 1077 (1232)
+.+.+ +.. . +.++ ++ +....|+.|++.+..|++.|......+. ...+.+. .
T Consensus 1056 ~~~~~~~~kk~~~~~~~~~~~p~~~a~~~~f~gv~~na~~vl~rv~~L~~L~~~i~~~~e~~~------~~~~~~~~~~~ 1129 (1373)
T KOG0384|consen 1056 VSEFGSNYKKTGGAREGKNKKPERKAVDFKFKGVKVNANKVLLRVEELYYLHKEIPGDPEDPN------QFIIDYLPKSV 1129 (1373)
T ss_pred cchhhhccccccccccccccCccchhhheeecceehhHHHHHHHHHHHHHHHHhccCCccccc------ccccCCCCccc
Confidence 64421 111 0 0010 01 2345677777777777777655421121 1111121 1
Q ss_pred CCCCCCcCHHHHHHHHHHHHhhhhhhHHHhhcCccCCchHHhh
Q 000903 1078 LRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVIC 1120 (1232)
Q Consensus 1078 ~~~~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l~l~~~i~ 1120 (1232)
..+++.|+.++|..||+|||+||||+|++|++||+|+|.+||.
T Consensus 1130 ~~~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~ 1172 (1373)
T KOG0384|consen 1130 HSWDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIF 1172 (1373)
T ss_pred cCcccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhc
Confidence 2378999999999999999999999999999999999999995
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=4.5e-150 Score=1299.17 Aligned_cols=769 Identities=39% Similarity=0.626 Sum_probs=639.5
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhh-CC-CCCeEEEeCCccHHHHHHHH
Q 000903 275 EHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPLSTLRNWEREF 352 (1232)
Q Consensus 275 ~~~P~~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~-~~-~~p~LIV~P~sll~qW~~E~ 352 (1232)
..+|.++.|++|||||++|+|||+..|.++.|||||||||||||+|+||++.+|.. .+ .|||||+||+||+.||.+||
T Consensus 157 ~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef 236 (971)
T KOG0385|consen 157 EDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEF 236 (971)
T ss_pred cCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999987 33 58999999999999999999
Q ss_pred HHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEE
Q 000903 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCM 432 (1232)
Q Consensus 353 ~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~v 432 (1232)
.+|+|++++++|+|++..|..+++.-+ ....|+|+||||+++.++.+.|++++|.++
T Consensus 237 ~rf~P~l~~~~~~Gdk~eR~~~~r~~~-----------------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~yl 293 (971)
T KOG0385|consen 237 KRFTPSLNVVVYHGDKEERAALRRDIM-----------------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYL 293 (971)
T ss_pred HHhCCCcceEEEeCCHHHHHHHHHHhh-----------------------ccCCCceEeehHHHHHhhHHHHhcCCceEE
Confidence 999999999999999999988776432 124899999999999999999999999999
Q ss_pred EEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhh---hhhHHHHHHHH
Q 000903 433 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQISRLH 509 (1232)
Q Consensus 433 IvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~---~~~~~~~~~L~ 509 (1232)
||||||||||.+|++++.|+.|.+.+||||||||+|||+.|||+|||||.|+.|.+.+.|..||.. ....+.+.+||
T Consensus 294 vIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh 373 (971)
T KOG0385|consen 294 VIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLH 373 (971)
T ss_pred EechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999964 23445899999
Q ss_pred HhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHhCCcccccC
Q 000903 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~-~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
.+|+||+|||+|.+|++.|||+.+.+++|+||.+|+++|+.++.+....++..+. ....++|++|+|||||||||||++
T Consensus 374 ~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g 453 (971)
T KOG0385|consen 374 KVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG 453 (971)
T ss_pred hhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC
Confidence 9999999999999999999999999999999999999999999999998876543 678999999999999999999999
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHH
Q 000903 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1232)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~ 668 (1232)
++|.++.+.. ++|+.+||||.+|++||.+|+++||||||||||++|||||++||..+||.||||||+|+.++|..+|+
T Consensus 454 ~ePg~pyttd--ehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~ 531 (971)
T KOG0385|consen 454 AEPGPPYTTD--EHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIE 531 (971)
T ss_pred CCCCCCCCcc--hHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHH
Confidence 9987655544 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHH
Q 000903 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1232)
Q Consensus 669 ~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~ 748 (1232)
.||++++..|+|||||||||+||||++|||||+||+||||+.|+||++|||||||+++|.||||||++||||+|+++|..
T Consensus 532 ~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~ 611 (971)
T KOG0385|consen 532 AFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAA 611 (971)
T ss_pred hcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc-----cccCCCHHHHHHHHHhchhhhccccccCCCCccccCCCHHHHHHHhcCCCCCCcccCCCC--c
Q 000903 749 KMVLEHLVVGRL-----KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDD--E 821 (1232)
Q Consensus 749 K~~l~~~v~g~~-----~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~~~~id~~l~r~~~~~~~~~~~~--~ 821 (1232)
|+.|+++||+.. ....++++++.+|+++|+..+|...+.+ .+| |||.||.|++..+.+.+... .
T Consensus 612 KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~--------~~d-Did~il~~~e~kt~e~~~~~~~~ 682 (971)
T KOG0385|consen 612 KLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKEST--------ISD-DIDRILERGEEKTAELNAKEAKL 682 (971)
T ss_pred HhchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhcccc--------cch-hHHHHHHhhhhhccCcchHHHhh
Confidence 999999999543 2345789999999999999999876643 134 99999999997776643210 1
Q ss_pred chhhhhhhhh---hhceechhhHHHHHHHHHHHHHHhhcccCCCccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 000903 822 DEDGFLKAFK---VANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQM 898 (1232)
Q Consensus 822 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 898 (1232)
+.++ +..|. +.+|+..+- .+.. . .. .|-+..+..-......-...+..|-|..|++
T Consensus 683 ~~~~-~~~~~~~~~y~~eG~d~----~ek~----~-----------~~-~wiep~krerk~~d~y~r~~l~~g~~~P~~~ 741 (971)
T KOG0385|consen 683 GESD-LRNFGMISVYNFEGEDY----KEKQ----S-----------LF-KWIEPPKRERKANDAYFREALRVGEPPPKQP 741 (971)
T ss_pred Ccch-hhhcCcceeeccCCcch----hhhh----h-----------hh-hhcCCchhhhhhhhhHHHHHHhcCCCCCCCc
Confidence 1111 11222 233322110 0000 0 00 0322111100000011122333444444444
Q ss_pred cccchhhc-cccccCCCCccccccccccCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccc---ccchhccCCChhHH
Q 000903 899 VSVEEDDL-AGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQR 974 (1232)
Q Consensus 899 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLte~e---~~~l~~~GF~~~~r 974 (1232)
......-+ ..+.+.. +.+-.+|. ++..+...+...|||.+| ++.++.+||++|++
T Consensus 742 ~~~d~qf~p~~L~el~-~kei~~~~--------------------k~~e~~kin~~~~lt~ee~~~k~~ll~~gft~w~k 800 (971)
T KOG0385|consen 742 EVQDFQFFPKRLFELL-EKEIEYYR--------------------KTIEQKKINNAEPLTQEEEEEKEELLSQGFTNWTK 800 (971)
T ss_pred cccccccCcHHHHHHH-HHHHHHHH--------------------HHHHHHhccCCCCCCcHHHhhhhhhhhccccchhh
Confidence 42110000 0011000 00000110 011111233456888765 67999999999999
Q ss_pred HH---HHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHHHhhhhcccCCCcccCCCccCccchHHHHHHHHHHHHH
Q 000903 975 AA---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLI 1051 (1232)
Q Consensus 975 r~---F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~~F~~~~~e~~~d~~~~~~~i~k~~~k~~~vl~ri~~~~~l 1051 (1232)
|+ |++++.|||++++ +.|++++.+ +++||..|+++||++|.| ++|+++++..|++|+.+++.. .-++.+|
T Consensus 801 ~df~~fi~a~eKygr~di--~~ia~~~e~-~~eev~~y~rvfwer~~e-l~d~ek~~~~ie~~e~~i~r~---~~~~~~l 873 (971)
T KOG0385|consen 801 RDFNQFIKANEKYGRDDI--ENIAAEVEG-TPEEVGEYARVFWERLEE-LSDIEKIIYQIERGEKRIQRG---DSIKKAL 873 (971)
T ss_pred hhHHHHHHHhhccCcchh--hhhHHhhcC-CHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhhhHhhhhHH---HHHHHHH
Confidence 96 5677889999886 689999998 999999999999999996 999999999999999888733 4467899
Q ss_pred HHHHHhhcCCCCCCCcccccccccCCCCCCCCcCHHHHHHHHHHHHhhhhhh---HHHhhcCc--------cCCchHHhh
Q 000903 1052 RDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGR---WQAIVDDK--------DLKVQEVIC 1120 (1232)
Q Consensus 1052 ~~Kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~w~~eeD~~LL~~i~~~Gyg~---we~Ik~D~--------~l~l~~~i~ 1120 (1232)
..|+.+|. +| +++.+.|+.+ +++.|++++|+||+||+||+||++ |+.+++.. +|++.++++
T Consensus 874 d~k~~~~k-~p------~~l~i~~~~n-k~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frfdw~~~sRt~ 945 (971)
T KOG0385|consen 874 DDKIARYK-AP------HQLRIQYGTN-KGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRFDWFIKSRTA 945 (971)
T ss_pred hhhHhhhc-Cc------hheeeeeccc-cCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCcccccceeeehhhH
Confidence 99999996 44 4578899765 889999999999999999999998 88876655 999999999
Q ss_pred HhhCCCCCcCCCCC
Q 000903 1121 QELNLPFINLPVPG 1134 (1232)
Q Consensus 1121 ~e~~~~~~~~~~~~ 1134 (1232)
+|++++|+|+++.-
T Consensus 946 ~el~Rr~ntli~~i 959 (971)
T KOG0385|consen 946 MELQRRCNTLITLI 959 (971)
T ss_pred HHHHhcCCeeEEee
Confidence 99999999999864
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.9e-128 Score=1218.01 Aligned_cols=765 Identities=38% Similarity=0.626 Sum_probs=633.7
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC--CCCCeEEEeCCccHHHHH
Q 000903 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1232)
Q Consensus 272 ~~~~~~P~~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~--~~~p~LIV~P~sll~qW~ 349 (1232)
..+..+|.++. ++|+|||++||+||+.++.++.+||||||||||||+|+|+++.++... ..+|+|||||++++.||.
T Consensus 157 ~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 157 TRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred ceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHH
Confidence 34667899998 799999999999999999999999999999999999999999998763 346999999999999999
Q ss_pred HHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCce
Q 000903 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1232)
Q Consensus 350 ~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w 429 (1232)
+||.+|+|.+++++|+|+...|..+....+ ...+|+|+||||+++.++...|..+.|
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------------~~~~~dVvITSYe~l~~e~~~L~k~~W 292 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQREELL-----------------------VAGKFDVCVTSFEMAIKEKTALKRFSW 292 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------------cccCCCcceecHHHHHHHHHHhccCCC
Confidence 999999999999999999988876655322 124689999999999999999999999
Q ss_pred eEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhh---hhHHHHH
Q 000903 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQIS 506 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~---~~~~~~~ 506 (1232)
++|||||||+|||..|+++++++.+.+.+||+|||||+||++.|||+||+||.|+.|++...|..+|... .....+.
T Consensus 293 ~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~ 372 (1033)
T PLN03142 293 RYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQ 372 (1033)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999642 3456788
Q ss_pred HHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccc
Q 000903 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1232)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~ 586 (1232)
.|+.+|+||++||+|++|...|||+.+.+|+|+||+.|+++|+.++.+....++.. +....+++++|+||+||+||||+
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhCCHHhh
Confidence 99999999999999999999999999999999999999999999999888777653 44567899999999999999999
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHH
Q 000903 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1232)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~ 666 (1232)
.+.++...... ...++..|+|+.+|+++|..+...|+||||||||+.++++|+++|..+|++|++|||+++..+|+++
T Consensus 452 ~~~ep~~~~~~--~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 452 QGAEPGPPYTT--GEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred hcccccCcccc--hhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 88776544332 3678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHH
Q 000903 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1232)
Q Consensus 667 i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~ 746 (1232)
|++||++++..++|||||+|||+||||++||+||+||+||||+.++||+||||||||+++|.||||++++||||+|++++
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc---cccCCCHHHHHHHHHhchhhhccccccCCCCccccCCCHHHHHHHhcCCCCCCcccCCC--Cc
Q 000903 747 KKKMVLEHLVVGRL---KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLD--DE 821 (1232)
Q Consensus 747 ~~K~~l~~~v~g~~---~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~~~~id~~l~r~~~~~~~~~~~--~~ 821 (1232)
.+|+.|+..|++.. ....+++++|.+|+++||+.+|+..+. .++|+|||.||+|++..+.+.... ..
T Consensus 610 ~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~~--------~~~~~did~il~~~~~~~~~~~~~~~~~ 681 (1033)
T PLN03142 610 YKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDS--------TITDEDIDRIIAKGEEATAELDAKMKKF 681 (1033)
T ss_pred HHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChHHhhhccCC--------CCCHHHHHHHHHhcHHHHHHHHHHHHHh
Confidence 99999999999543 235689999999999999999964431 257999999999998766553210 01
Q ss_pred chhhhhhhhhhh----ceechhhHHHHHHHHHHHHHHhhcccCCCccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 000903 822 DEDGFLKAFKVA----NFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQ 897 (1232)
Q Consensus 822 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 897 (1232)
..+. + .|++. -|++..+......+ -.|.++ ....++.++||.||.
T Consensus 682 ~~~~-~-~f~~~~~~~~~~~~g~~~~~~~~-------------------~~~~~~----------~~~~~~~~~~re~~~ 730 (1033)
T PLN03142 682 TEDA-I-KFKMDDTAELYDFDDEDDKDENK-------------------LDFKKI----------VSDNWIDPPKRERKR 730 (1033)
T ss_pred chhh-h-cccccCCcceeeecCccccchhh-------------------hhHhhh----------ccccccccchhhhhc
Confidence 1111 1 24322 12322111100000 000000 011233344455443
Q ss_pred ccccchhhccccccCCCCccccccccccCCCCCCCCCCCCCCCCc-----------------------------------
Q 000903 898 MVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN----------------------------------- 942 (1232)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 942 (1232)
.+.. |.+|.+.+..+. +..+..+|.|+
T Consensus 731 ~~~~----------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~q~~~~~~l~~l~~~e~~~~~~~~~~~~~ 792 (1033)
T PLN03142 731 NYSE----------------SEYFKQAMRQGA--PAKPKEPRIPRMPQLHDFQFFNVQRLTELYEKEVRYLMQAHQKGQL 792 (1033)
T ss_pred ccch----------------hHHHHHHHhcCC--cccCCCCCCCCCCCCccccCCCHHHHHHHHHHHHHHHhccccCCch
Confidence 2211 111111111000 00000000000
Q ss_pred --ccccccCCCCCCCCcccc---ccchhccCCChhHHHH---HHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHH
Q 000903 943 --KKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQRAA---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFL 1014 (1232)
Q Consensus 943 --~~~~~~~~~~~~pLte~e---~~~l~~~GF~~~~rr~---F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~~F~ 1014 (1232)
....+...++..|||++| +++|+.+||++|+||+ ||++|.|||+.++ ..||.++.+||++||++|+++||
T Consensus 793 ~~~~~~~~~~~~~~~lt~~e~~~k~~l~~~gf~~w~~~~f~~f~~~~~~~gr~~~--~~i~~~~~~k~~~ev~~y~~~f~ 870 (1033)
T PLN03142 793 KDTIDVAEPEEPGDPLTAEEQEEKEQLLEEGFSTWSRRDFNAFIRACEKYGRNDI--KSIASEMEGKTEEEVERYAKVFW 870 (1033)
T ss_pred hhhhhhccccccCCCCCHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHhCHhHH--HHHHHHhcCCCHHHHHHHHHHHH
Confidence 000112334467899987 5899999999999995 6888999999776 68999999999999999999999
Q ss_pred HhhhhcccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCCCCCcCHHHHHHHHH
Q 000903 1015 THITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLR 1094 (1232)
Q Consensus 1015 ~~~~e~~~d~~~~~~~i~k~~~k~~~vl~ri~~~~~l~~Kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~w~~eeD~~LL~ 1094 (1232)
+||.| ++||++++..|++|+.|++.. ...+.+|+.||..|. +| + .++.++|+ .++++.|++++||||||
T Consensus 871 ~~~~~-~~~~~~~~~~ie~~e~~~~~~---~~~~~~~~~k~~~~~-~p---~--~~l~~~~~-~~~~~~~~~~~d~~~~~ 939 (1033)
T PLN03142 871 ERYKE-LNDYDRIIKNIERGEARISRK---DEIMKAIGKKLDRYK-NP---W--LELKIQYG-QNKGKLYNEECDRFMLC 939 (1033)
T ss_pred Hhhhh-hccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc-Cc---H--HHceeecC-CCCCCcCCHHHHHHHHH
Confidence 99996 999999999999999888633 457899999999997 66 5 56788996 56789999999999999
Q ss_pred HHHhhhhhhHHHhhcCc--------cCCchHHhhHhhCCCCCcCCCC
Q 000903 1095 AVLKHGYGRWQAIVDDK--------DLKVQEVICQELNLPFINLPVP 1133 (1232)
Q Consensus 1095 ~i~~~Gyg~we~Ik~D~--------~l~l~~~i~~e~~~~~~~~~~~ 1133 (1232)
++|+||||+|+.|+.++ ||++++++.+|+++||.+|+..
T Consensus 940 ~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~ 986 (1033)
T PLN03142 940 MVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRL 986 (1033)
T ss_pred HHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHH
Confidence 99999999999987776 9999999999999999999875
No 4
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8e-97 Score=877.67 Aligned_cols=506 Identities=43% Similarity=0.724 Sum_probs=446.6
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC--CCCCeEEEeCCccHHHHH
Q 000903 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1232)
Q Consensus 272 ~~~~~~P~~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~--~~~p~LIV~P~sll~qW~ 349 (1232)
..+..||..+.||+|++||+.||.||..++.++-+||||||||||||+|+|+++.||++. ..||+|||||+++|.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 457789999999999999999999999999999999999999999999999999999985 358999999999999999
Q ss_pred HHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCce
Q 000903 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1232)
Q Consensus 350 ~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w 429 (1232)
.||.+|+|.+..+.|.|++..|..+..-- ...+|+|++|||+.+.++...|.+|.|
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~qi------------------------r~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQQ------------------------RHGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHHH------------------------hcccceeeeeeHHHhcCCHHHHhccCC
Confidence 99999999999999999999998665321 226999999999999999999999999
Q ss_pred eEEEEcCcccccCcccHHHHHHH-hcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh--------
Q 000903 430 QCMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN-------- 500 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~-~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~-------- 500 (1232)
.++||||+||+||..+++...+. .+.+.+||||||||+||++.|||+||||+.|.+|.+...|.+||...-
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999999 678999999999999999999999999999999999999999996421
Q ss_pred --hH---HHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHH--hcCCcchhHHHHH
Q 000903 501 --QE---EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT--RRGGAQISLINVV 573 (1232)
Q Consensus 501 --~~---~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~--~~~~~~~~l~~il 573 (1232)
.+ -.+.+||++|+||++||.|++|+..||.+.+.++.|.||..|+.+|+.+.....-.+. ++.+....++|.+
T Consensus 597 LteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~i 676 (1157)
T KOG0386|consen 597 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTI 676 (1157)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHh
Confidence 11 2478999999999999999999999999999999999999999999998654332222 2445567899999
Q ss_pred HHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEE
Q 000903 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYER 653 (1232)
Q Consensus 574 ~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~r 653 (1232)
|+|||||||||+++.++......... ..|+..|||+.+|+++|++|++.|||||.||||++++++|++||..+++.|.|
T Consensus 677 mqLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlR 755 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLR 755 (1157)
T ss_pred HHHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheee
Confidence 99999999999998887655433332 68999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEe
Q 000903 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1232)
Q Consensus 654 idG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlv 733 (1232)
+||++..++|-..++.||.++++.|+||+||+|||+|+||++||||||||+||||+.|+||.+|+|||||++.|.|+||+
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHHHHHHHHHhc--cccccCCCHHHHHHHHHhchhhhccccccCCCCccccCCCHHHHHHHhcCCC
Q 000903 734 TRGSIEERMMQMTKKKMVLEHLVVG--RLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQ 810 (1232)
Q Consensus 734 t~~TvEE~i~~~~~~K~~l~~~v~g--~~~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~~~~id~~l~r~~ 810 (1232)
|.++|||+|++.|..|+..+..|+. ..+. .-+.++=+.+|. .+...++++.+ .-.-+++.|..+|.|++
T Consensus 836 tv~sveE~il~~a~~Kl~~d~kviqag~fdn-~st~~eR~~~Le----~~l~~~~~~~~---~~v~~~~~ln~~larse 906 (1157)
T KOG0386|consen 836 TVNSVEEKILAEAFYKLDVDGKVIQAGKFDN-KSTAEEREMFLE----QLLEMEGDEEE---EEVPDDEVLNSMLARSE 906 (1157)
T ss_pred hhhHHHHHHHHHHHHhcCchHhhhhcccccC-CCcHHHHHHHHH----HHHhCCCcccc---ccCCcHHHHHHHHhcch
Confidence 9999999999999999999999984 3333 233333333332 22333222211 11236778999998874
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-94 Score=842.03 Aligned_cols=464 Identities=44% Similarity=0.672 Sum_probs=406.7
Q ss_pred ccCCCCCC-CCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeCCccHHHHHHH
Q 000903 274 YEHSPEFL-SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1232)
Q Consensus 274 ~~~~P~~~-~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P~sll~qW~~E 351 (1232)
...||..+ ++.+|+|||+-|||||.-.+.++-+||||||||||||+|+|||+++|+..+ .||+|||||.||+.||.+|
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHH
Confidence 34477766 467999999999999999999999999999999999999999999999875 5799999999999999999
Q ss_pred HHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhh---cccccCCCc
Q 000903 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (1232)
Q Consensus 352 ~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~---d~~~l~~i~ 428 (1232)
|.+|+|.+.|..|+|+...|..++..-. .....|+|++|||..+.. |..+|+..+
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~----------------------~~~~~ydVllTTY~la~~~kdDRsflk~~~ 524 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIK----------------------KNKDDYDVLLTTYNLAASSKDDRSFLKNQK 524 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHh----------------------ccCCCccEEEEEeecccCChHHHHHHHhcc
Confidence 9999999999999999999998876411 123589999999999854 678899999
Q ss_pred eeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCC-hHHHHHHHhhhh-------
Q 000903 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS-LEEFQEEFKDIN------- 500 (1232)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~-~~~F~~~~~~~~------- 500 (1232)
|+++|.||+|.|||..|.+++.|..+.+++||||||||+|||+.||++||.|+.|+.|.+ .+++..-|....
T Consensus 525 ~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e 604 (941)
T KOG0389|consen 525 FNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIE 604 (941)
T ss_pred ccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhh
Confidence 999999999999999999999999999999999999999999999999999999999975 456666664322
Q ss_pred ----hHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCc--chhHHHHHH
Q 000903 501 ----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVM 574 (1232)
Q Consensus 501 ----~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~--~~~l~~il~ 574 (1232)
..+.+.+...+++||+|||.|++|+++||||..++.+|+|+..|+.+|..+++.....++....+ ..+ .+++|
T Consensus 605 ~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlm 683 (941)
T KOG0389|consen 605 NALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLM 683 (941)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHH
Confidence 14578899999999999999999999999999999999999999999999988763333322222 112 57999
Q ss_pred HHHHHhCCcccccCCCCC---------------cccchH-------------HHH----------------HHHhhhhHH
Q 000903 575 ELRKLCCHPYMLEGVEPD---------------IEDTNE-------------SFK----------------QLLESSGKL 610 (1232)
Q Consensus 575 ~Lrk~c~hP~L~~~~e~~---------------~~~~~~-------------~~~----------------~li~~S~Kl 610 (1232)
+|||+++||-|+...-.+ ....+. .+. .++-.|||.
T Consensus 684 qlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~ 763 (941)
T KOG0389|consen 684 QLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKC 763 (941)
T ss_pred HHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhH
Confidence 999999999987432111 000000 000 124469999
Q ss_pred HHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccc
Q 000903 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1232)
Q Consensus 611 ~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~G 690 (1232)
..|.+||++++..|+||||||||+.|||||+-+|...|++|+|+||+|....||.+|+.||.+ .+.|||||||+|||.|
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d-~difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTD-KDIFVFLLSTKAGGFG 842 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccC-CceEEEEEeeccCcce
Confidence 999999999999999999999999999999999999999999999999999999999999984 4678999999999999
Q ss_pred cccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHHHHHHHhcccc
Q 000903 691 INLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK 761 (1232)
Q Consensus 691 INL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~~v~g~~~ 761 (1232)
|||++||+|||+|.++||.+|.||.+||||+||+|+|+|||||+++||||.|+++|++|+.|+..+.+..+
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999975543
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-93 Score=843.03 Aligned_cols=470 Identities=40% Similarity=0.714 Sum_probs=418.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC--CCCCeEEEeCCccHHHHHHHHHHHcCCCc
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWEREFATWAPQMN 360 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~--~~~p~LIV~P~sll~qW~~E~~~~~p~~~ 360 (1232)
.|+||.||..|++||..+|.++-|||||||||||||||+|+++++|..+ ..||+|||||.+++.||.-||++|+|.++
T Consensus 613 rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPglK 692 (1958)
T KOG0391|consen 613 RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPGLK 692 (1958)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCcce
Confidence 4899999999999999999999999999999999999999999999764 45899999999999999999999999999
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccc
Q 000903 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (1232)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrl 440 (1232)
+..|+|+...|+.-++- | .....|||+||||..+..+...|+...|.|+|+||||+|
T Consensus 693 ILTYyGs~kErkeKRqg-W----------------------~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnI 749 (1958)
T KOG0391|consen 693 ILTYYGSHKERKEKRQG-W----------------------AKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNI 749 (1958)
T ss_pred EeeecCCHHHHHHHhhc-c----------------------cCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhh
Confidence 99999999998754431 1 123579999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh----------hHHHHHHHHH
Q 000903 441 KNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------QEEQISRLHR 510 (1232)
Q Consensus 441 Kn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~----------~~~~~~~L~~ 510 (1232)
||..|+.+++|..|++.+||||||||+||++.|||+|++||+|..|.+...|..||.+.. ....+.+||+
T Consensus 750 KnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHk 829 (1958)
T KOG0391|consen 750 KNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHK 829 (1958)
T ss_pred cchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997532 2467899999
Q ss_pred hhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCC
Q 000903 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1232)
Q Consensus 511 ~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e 590 (1232)
+|+||+|||+|.||++.||.|.|++|+|.||..|+.+|+.++.+.-..-.-..|...+.+|++|+||||||||-||+.--
T Consensus 830 VlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRp 909 (1958)
T KOG0391|consen 830 VLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRP 909 (1958)
T ss_pred HhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999887655555567788899999999999999997773100
Q ss_pred -----------------------------C---------C------c------------------cc-------------
Q 000903 591 -----------------------------P---------D------I------------------ED------------- 595 (1232)
Q Consensus 591 -----------------------------~---------~------~------------------~~------------- 595 (1232)
+ . . ..
T Consensus 910 v~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~ 989 (1958)
T KOG0391|consen 910 VGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGA 989 (1958)
T ss_pred CCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCcccccc
Confidence 0 0 0 00
Q ss_pred -------------chH----------------------------------------------------------------
Q 000903 596 -------------TNE---------------------------------------------------------------- 598 (1232)
Q Consensus 596 -------------~~~---------------------------------------------------------------- 598 (1232)
..+
T Consensus 990 ~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~p 1069 (1958)
T KOG0391|consen 990 PFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQP 1069 (1958)
T ss_pred ccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccc
Confidence 000
Q ss_pred --------------------------------------------------------------------HHH---------
Q 000903 599 --------------------------------------------------------------------SFK--------- 601 (1232)
Q Consensus 599 --------------------------------------------------------------------~~~--------- 601 (1232)
.+.
T Consensus 1070 l~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APv 1149 (1958)
T KOG0391|consen 1070 LLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPV 1149 (1958)
T ss_pred cccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcc
Confidence 000
Q ss_pred ---------------------------------------HHH--------------------------------------
Q 000903 602 ---------------------------------------QLL-------------------------------------- 604 (1232)
Q Consensus 602 ---------------------------------------~li-------------------------------------- 604 (1232)
.+|
T Consensus 1150 yg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlr 1229 (1958)
T KOG0391|consen 1150 YGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLR 1229 (1958)
T ss_pred cchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHH
Confidence 000
Q ss_pred ---------------------------hhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCC
Q 000903 605 ---------------------------ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK 657 (1232)
Q Consensus 605 ---------------------------~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~ 657 (1232)
..+||++.|.-||+.|+..|||||||+||+.|||+|+.||.++||.|.||||+
T Consensus 1230 sel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~ 1309 (1958)
T KOG0391|consen 1230 SELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGN 1309 (1958)
T ss_pred HHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCC
Confidence 02889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCc
Q 000903 658 VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1232)
Q Consensus 658 ~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1232)
++.++||.++++||+ +...|||||||++||+||||+.||||||||+||||..|.||++|||||||++.|+|||||++.|
T Consensus 1310 t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1310 TSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 999999999999998 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc--cccCCCHHHHHHHHHh
Q 000903 738 IEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIRY 776 (1232)
Q Consensus 738 vEE~i~~~~~~K~~l~~~v~g~~--~~~~~~~~el~~ll~~ 776 (1232)
|||.|+..+.+|..|+.+++++. ...-+.+..+.+||..
T Consensus 1389 IEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1389 IEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred HHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcC
Confidence 99999999999999999999443 3445666677766543
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-92 Score=805.94 Aligned_cols=457 Identities=45% Similarity=0.762 Sum_probs=411.4
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC--CCCeEEEeCCccHHHHHHH
Q 000903 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWERE 351 (1232)
Q Consensus 274 ~~~~P~~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~--~~p~LIV~P~sll~qW~~E 351 (1232)
.-.||..+. ++|+.||+.|+|||..++.+|.+||||||||||||+|+|+++++|.+.. .||||||+|.|+|.||..|
T Consensus 557 tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 557 TVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 456788887 8999999999999999999999999999999999999999999998753 5899999999999999999
Q ss_pred HHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeE
Q 000903 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (1232)
Q Consensus 352 ~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~ 431 (1232)
|.+|+|.++++.|.|+..+|.+++.+ +.+.. . -.....|||+||||+++..|...|++++|.+
T Consensus 636 isrFlP~~k~lpywGs~~eRkiLrKf--w~rKn---m------------Y~rna~fhVviTSYQlvVtDeky~qkvKWQY 698 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERKILRKF--WNRKN---M------------YRRNAPFHVVITSYQLVVTDEKYLQKVKWQY 698 (1185)
T ss_pred HHHhCccceeecCcCChhhhHHHHHh--cchhh---h------------hccCCCceEEEEeeeeeechHHHHHhhhhhh
Confidence 99999999999999999999999874 11111 0 1134689999999999999999999999999
Q ss_pred EEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhh----------hhh
Q 000903 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD----------INQ 501 (1232)
Q Consensus 432 vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~----------~~~ 501 (1232)
+|+|||+.||...|..++.|..|+++.||||||||+||+..|||+||+|++|..|.+..+|.+||.. ...
T Consensus 699 MILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tln 778 (1185)
T KOG0388|consen 699 MILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLN 778 (1185)
T ss_pred eehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999963 124
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhC
Q 000903 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1232)
Q Consensus 502 ~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~ 581 (1232)
+.++.+||.+|+||||||.|++|..+|..+.++.|+|.||..|+.+|+.|..+.. ...+.+++|+|||+||
T Consensus 779 eqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS---------~~E~~~~vmQlrKVCN 849 (1185)
T KOG0388|consen 779 EQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS---------SMEMENLVMQLRKVCN 849 (1185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHhcC
Confidence 6789999999999999999999999999999999999999999999999866543 1233469999999999
Q ss_pred CcccccCCCCCcc-------------------------------------------------------------------
Q 000903 582 HPYMLEGVEPDIE------------------------------------------------------------------- 594 (1232)
Q Consensus 582 hP~L~~~~e~~~~------------------------------------------------------------------- 594 (1232)
||.||+..++...
T Consensus 850 HPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~ 929 (1185)
T KOG0388|consen 850 HPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLS 929 (1185)
T ss_pred ChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccce
Confidence 9988854433100
Q ss_pred -----------cch------------------HH----------------------------------------------
Q 000903 595 -----------DTN------------------ES---------------------------------------------- 599 (1232)
Q Consensus 595 -----------~~~------------------~~---------------------------------------------- 599 (1232)
... +.
T Consensus 930 ~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~ 1009 (1185)
T KOG0388|consen 930 LEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHI 1009 (1185)
T ss_pred eeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCc
Confidence 000 00
Q ss_pred ----------HHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHH
Q 000903 600 ----------FKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1232)
Q Consensus 600 ----------~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~ 669 (1232)
+..++..|||+..|+.||++|++.|||||+|.||+.|+|+|++||..+||.|.|+||+.....|..+|.+
T Consensus 1010 pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrD 1089 (1185)
T KOG0388|consen 1010 PLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRD 1089 (1185)
T ss_pred ccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhh
Confidence 0011335999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHH
Q 000903 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1232)
Q Consensus 670 Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K 749 (1232)
|++ ++.||||+||||||+||||++||||||||+||||..+.||++||||.||++.|+||||++++||||+|++++.+|
T Consensus 1090 wQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK 1167 (1185)
T KOG0388|consen 1090 WQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQK 1167 (1185)
T ss_pred ccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhH
Confidence 997 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 000903 750 MVLEHLVVGR 759 (1232)
Q Consensus 750 ~~l~~~v~g~ 759 (1232)
....++|+.+
T Consensus 1168 ~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1168 DEVQQMVMHG 1177 (1185)
T ss_pred HHHHHHHHcC
Confidence 9999999843
No 8
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=9.6e-93 Score=848.71 Aligned_cols=625 Identities=51% Similarity=0.840 Sum_probs=540.0
Q ss_pred cccccccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCCCc--ccccccccccccCccC---CC-C
Q 000903 46 RIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN--DIDKILDCEMRPTVAG---DS-D 119 (1232)
Q Consensus 46 ~~~~~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~--~iekIL~~R~~p~~~~---~~-~ 119 (1232)
..+.+...|.+|+.+|.+++|++|+.+||..|+.||+...|.+.|.|+.|..+.. .+++|+.|+++|.... .. .
T Consensus 42 ~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~ 121 (696)
T KOG0383|consen 42 WDDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGV 121 (696)
T ss_pred cchhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCc
Confidence 4466778999999999999999999999999999999999999999999977654 7999999999988643 11 1
Q ss_pred cccccchhhhhhHhhhhccCCCcccccccchhhHHHHhhcChhHHHHHhhhhhhcccCC-------------C-C--ch-
Q 000903 120 VSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNN-------------N-A--EE- 182 (1232)
Q Consensus 120 ~~~~~~~~~~~~eYlVKWkg~Sy~h~tW~pe~~L~~~~~~~~~~k~kl~~f~k~~~~~~-------------~-~--~e- 182 (1232)
...........++|+|||+|.||+||.|+++..+.......+. -+..+........ . . ++
T Consensus 122 ~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r 198 (696)
T KOG0383|consen 122 ISPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLPV---ELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEER 198 (696)
T ss_pred cCCcccccchhhhcccccccCCccchhHHHHHHhhhhcccchH---hhhhhhhcccCccccccccccCccccccccchhh
Confidence 1122334456789999999999999999999998765432211 1122211111100 0 0 11
Q ss_pred -hhhcCCCCccchhhhhhhc-cCCCcceeEEeeeccccccccccccC-CcCccHHHHHHHHhhhhccccccCCccCCCCc
Q 000903 183 -DFVAIRPEWTTVDRILACR-GEDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIKIQSRSHRSSCNKQKSSPQ 259 (1232)
Q Consensus 183 -~~~~~~~~~~~verIi~~r-~~~~~~eyLVKWkgL~Y~e~tWE~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 259 (1232)
....+.|+|.++.||+.++ ...+...|+|||+.|+|++++|+.+. ++..++..+++|...... ....+..
T Consensus 199 ~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~---~~~~k~~---- 271 (696)
T KOG0383|consen 199 FLLYGIKPEWMPIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREK---PTVSKDL---- 271 (696)
T ss_pred hhheeccccccccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCc---ccccccc----
Confidence 1235789999999999999 55678999999999999999999877 778888888888764433 1111100
Q ss_pred ccccccCCCcccccccCCCCCCC--CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC--CCC
Q 000903 260 DVTESTKKPKEFQQYEHSPEFLS--GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISP 335 (1232)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~P~~~~--~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~--~~p 335 (1232)
. .........+..+|.++. ++.|++||.+|+||++..|..+..+|||||||+|||+|++.|+..++... .+|
T Consensus 272 --~--~~~~~~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P 347 (696)
T KOG0383|consen 272 --K--SNTVDDPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGP 347 (696)
T ss_pred --c--ccccCCCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCC
Confidence 0 002344567888999987 59999999999999999999999999999999999999999999998864 369
Q ss_pred eEEEeCCccHHHHHHHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHH
Q 000903 336 HLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYE 415 (1232)
Q Consensus 336 ~LIV~P~sll~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye 415 (1232)
+|+++|.+++.+|.+|+..|+|++.++.|+|+..+|.+++++++.+.+...+.. .+..........+|+|.+++|+
T Consensus 348 ~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~----~~i~~~~~~s~~k~~vl~~s~~ 423 (696)
T KOG0383|consen 348 PLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSS----PKISEMKTESSAKFHVLLPSYE 423 (696)
T ss_pred ceeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccC----CccccccchhhcccccCCCchh
Confidence 999999999999999999999999999999999999999999998877643222 1222233445678999999999
Q ss_pred HHhhcccccCCCceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHH
Q 000903 416 MINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE 495 (1232)
Q Consensus 416 ~l~~d~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~ 495 (1232)
++..+...+..+.|.++|+||+||+||..|+++..+......++++|||||+|||+.|||++||||.|+.|++...|.+.
T Consensus 424 ~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~ 503 (696)
T KOG0383|consen 424 TIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEE 503 (696)
T ss_pred hcccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 000903 496 FKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (1232)
Q Consensus 496 ~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~ 575 (1232)
|.++..++.+..||.++.|+|+||.|.||++.+|+|.+.+++++|++.|+++|+.++++++..+.. ++...+++|++|+
T Consensus 504 ~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~me 582 (696)
T KOG0383|consen 504 FHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVME 582 (696)
T ss_pred cchhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987 6777899999999
Q ss_pred HHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEe
Q 000903 576 LRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERID 655 (1232)
Q Consensus 576 Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~rid 655 (1232)
|||+|+|||+++..++...........++.+|+|+.+|.+|+++++..||||+||+||+.+||+|+++|...+ .|.|+|
T Consensus 583 l~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~d 661 (696)
T KOG0383|consen 583 LRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERID 661 (696)
T ss_pred HHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceecc
Confidence 9999999999999766666666677889999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCceEEEeeccccccc
Q 000903 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1232)
Q Consensus 656 G~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~G 690 (1232)
|..+..+||.+|++||++++..||||+||||||+|
T Consensus 662 G~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 662 GPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999999999999999998
No 9
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6e-90 Score=803.88 Aligned_cols=489 Identities=37% Similarity=0.632 Sum_probs=416.0
Q ss_pred ccccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC--CCCeEEEeCCccHHH
Q 000903 270 EFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRN 347 (1232)
Q Consensus 270 ~~~~~~~~P~~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~--~~p~LIV~P~sll~q 347 (1232)
.+...-..|.++. ..|+|||.+||+||..+++++.||||+||||||||||+|+||+.|.+.+ .+|.|||||.+++.|
T Consensus 191 ~~~~~~~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~q 269 (923)
T KOG0387|consen 191 KLEGGFKVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQ 269 (923)
T ss_pred cccccccccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHH
Confidence 3333344566655 5799999999999999999999999999999999999999999998763 479999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCC
Q 000903 348 WEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI 427 (1232)
Q Consensus 348 W~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i 427 (1232)
|.+||.+|+|.++|.+|||+...-. ++.+.... +... ...+.....-+|+||||+.+......+..+
T Consensus 270 W~~E~~~w~p~~rv~ilh~t~s~~r----~~~~~~~~-------~~~~--~L~r~~~~~~~ilitty~~~r~~~d~l~~~ 336 (923)
T KOG0387|consen 270 WMKEFQTWWPPFRVFILHGTGSGAR----YDASHSSH-------KKDK--LLIRKVATDGGILITTYDGFRIQGDDLLGI 336 (923)
T ss_pred HHHHHHHhCcceEEEEEecCCcccc----cccchhhh-------hhhh--hheeeecccCcEEEEehhhhcccCcccccc
Confidence 9999999999999999999876311 00000000 0000 001112245679999999999999999999
Q ss_pred ceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh-------
Q 000903 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN------- 500 (1232)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~------- 500 (1232)
.|+++|+||+|+|||++|+++.+++.+.+.+|++|||||+|||+.|||+|+.|+.|+.+++...|.+.|..+-
T Consensus 337 ~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaN 416 (923)
T KOG0387|consen 337 LWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYAN 416 (923)
T ss_pred cccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995321
Q ss_pred --------hHHHHHHHHHhhhhhhhhhhhhhHhh-cCCCcEEEEEeccCCHHHHHHHHHHHHHHH--HHHHhcCCcchhH
Q 000903 501 --------QEEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNY--QILTRRGGAQISL 569 (1232)
Q Consensus 501 --------~~~~~~~L~~~L~p~~lRR~k~dv~~-~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~--~~l~~~~~~~~~l 569 (1232)
...-...|+.++.||+|||+|+||.. .||.|.+++|+|.||+.|+.+|..++.... ..++ .....
T Consensus 417 As~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~n----g~~~~ 492 (923)
T KOG0387|consen 417 ASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILN----GKRNC 492 (923)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHc----CCccc
Confidence 12345579999999999999999998 999999999999999999999999987532 2222 12233
Q ss_pred HHHHHHHHHHhCCcccccCCCC-CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHh-hC
Q 000903 570 INVVMELRKLCCHPYMLEGVEP-DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-FK 647 (1232)
Q Consensus 570 ~~il~~Lrk~c~hP~L~~~~e~-~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~-~~ 647 (1232)
+.-+.-||++||||-|++.-.. .....+ ....+..||||.+|.++|...+.+|+|||+|||...|||||+.+|. ..
T Consensus 493 l~Gi~iLrkICnHPdll~~~~~~~~~~~D--~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~ 570 (923)
T KOG0387|consen 493 LSGIDILRKICNHPDLLDRRDEDEKQGPD--YEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAK 570 (923)
T ss_pred eechHHHHhhcCCcccccCcccccccCCC--cCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcC
Confidence 4445669999999999976321 111111 1255778999999999999999999999999999999999999999 79
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCce
Q 000903 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1232)
Q Consensus 648 g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V 727 (1232)
||+|+|+||.|+...|+.+|++||.+. ..+||||+|++||+|+||+.||+||||||||||+.|.||..||+||||+|.|
T Consensus 571 ~ysylRmDGtT~~~~R~~lVd~Fne~~-s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV 649 (923)
T KOG0387|consen 571 GYSYLRMDGTTPAALRQKLVDRFNEDE-SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDV 649 (923)
T ss_pred CceEEEecCCCccchhhHHHHhhcCCC-ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccce
Confidence 999999999999999999999999855 4678999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCcHHHHHHHHHHHHHHHHHHHh-ccccccCCCHHHHHHHHHhchh
Q 000903 728 MIFRLITRGSIEERMMQMTKKKMVLEHLVV-GRLKAQNINQEELDDIIRYGSK 779 (1232)
Q Consensus 728 ~Vyrlvt~~TvEE~i~~~~~~K~~l~~~v~-g~~~~~~~~~~el~~ll~~ga~ 779 (1232)
.||||++.|||||+||.++--|..|.+.++ +.....-+...+|.++|.++..
T Consensus 650 ~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~ 702 (923)
T KOG0387|consen 650 VVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDF 702 (923)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCC
Confidence 999999999999999999999999999888 4445567888899999887754
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.7e-83 Score=769.84 Aligned_cols=465 Identities=37% Similarity=0.622 Sum_probs=404.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC--------CCCCeEEEeCCccHHHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--------RISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~--------~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
.+||.||.+|||||.++..-+-+|||||+||||||+|+|++++.=... ..-|.|||||.++..+|+.|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 579999999999999999999999999999999999999998754322 223899999999999999999999
Q ss_pred cCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEc
Q 000903 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1232)
Q Consensus 356 ~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvD 435 (1232)
+|-++|+.|.|....|..+|.. ..+.+|+||||+.+++|...|.++.|.|+|+|
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q--------------------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ--------------------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLD 1107 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh--------------------------ccccceEEeeHHHHHHHHHHHHhcccceEEec
Confidence 9999999999999999877652 23568999999999999999999999999999
Q ss_pred CcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhh---------------h
Q 000903 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---------------N 500 (1232)
Q Consensus 436 EaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~---------------~ 500 (1232)
|+|-|||..++++++++++.+.|||+|||||+|||+.|||+|++||+|+.+++...|.++|... .
T Consensus 1108 EGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~Ea 1187 (1549)
T KOG0392|consen 1108 EGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEA 1187 (1549)
T ss_pred CcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999532 1
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHh-------cCC-cchhHHHH
Q 000903 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-------RGG-AQISLINV 572 (1232)
Q Consensus 501 ~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~-------~~~-~~~~l~~i 572 (1232)
..-.++.||+.+=|||+||+|.||+++||||..+..+|+|+|.|+++|+.+..+....... ..+ .....+..
T Consensus 1188 G~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqa 1267 (1549)
T KOG0392|consen 1188 GVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQA 1267 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHH
Confidence 2346788999999999999999999999999999999999999999999998873222211 112 14567788
Q ss_pred HHHHHHHhCCcccccCC-CCCcccchHH------HHHHHhhhhHHHHHHHHHHHHH--------------HcCceEEEEe
Q 000903 573 VMELRKLCCHPYMLEGV-EPDIEDTNES------FKQLLESSGKLQLLDKMMVKLK--------------EQGHRVLIYS 631 (1232)
Q Consensus 573 l~~Lrk~c~hP~L~~~~-e~~~~~~~~~------~~~li~~S~Kl~~L~klL~~l~--------------~~g~KvLIFs 631 (1232)
+..|||.|+||.|.-.. -++....... --+-+..|+|+.+|..+|...- -.+||+||||
T Consensus 1268 LqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFc 1347 (1549)
T KOG0392|consen 1268 LQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFC 1347 (1549)
T ss_pred HHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEee
Confidence 99999999999987543 2221111111 1123678999999999998752 1479999999
Q ss_pred cchhHHHHHHHHHhhC---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCCh
Q 000903 632 QFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP 708 (1232)
Q Consensus 632 q~~~~ldiL~~~L~~~---g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp 708 (1232)
|+..|+|++++-|-.. .+.|.|+||++++.+|++++.+||.+++-. |+|++|.+||+|+|||+||||||++-||||
T Consensus 1348 QlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptID-vLlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1348 QLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTID-VLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCcee-EEEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999999999988543 567889999999999999999999987765 499999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHHHHHHHhcccc--ccCCCHHHHHHHHH
Q 000903 709 HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--AQNINQEELDDIIR 775 (1232)
Q Consensus 709 ~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~~v~g~~~--~~~~~~~el~~ll~ 775 (1232)
.+|+|||+|||||||++.|.||||||+||+||+|+-.++-||..++.|++.-+ -..++-++|.+++.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999997643 34567777777654
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-71 Score=670.63 Aligned_cols=453 Identities=35% Similarity=0.549 Sum_probs=381.6
Q ss_pred CCCcHHHHHHHHHHHHhhc------CCCceEEEcCCCCcHHHHHHHHHHHHhhCCC------CCeEEEeCCccHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTLRNWERE 351 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~------~~~~~ILaDemGLGKTiqaia~l~~l~~~~~------~p~LIV~P~sll~qW~~E 351 (1232)
..|||||.+|++||..+.. ..+|||+||+||+|||+|+|+||..++...+ ...|||||.+++.||.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5799999999999977653 4578999999999999999999999987643 478999999999999999
Q ss_pred HHHHcC--CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCce
Q 000903 352 FATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1232)
Q Consensus 352 ~~~~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w 429 (1232)
|.+|.. .+....++|...+ ..+....+..-. .......|++.||++++.....+....+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~------------------~~~~~~~vli~sye~~~~~~~~il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLG------------------YKQFTTPVLIISYETASDYCRKILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhh------------------hhheeEEEEeccHHHHHHHHHHHhcCCC
Confidence 999985 5777777777765 111111110000 0123456999999999988888889999
Q ss_pred eEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh---------
Q 000903 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~--------- 500 (1232)
++||+||+|++||..|.++++|..+.+.+|++|||||+||++.|+|++|+|..|+.+++...|...|....
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885321
Q ss_pred -----hHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 000903 501 -----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (1232)
Q Consensus 501 -----~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~ 575 (1232)
.++.+.+|..+...|++||+-....+.||++.+++|.|.+++.|...|+.++........ .+ ..+..+..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~--~~---~~l~~~~~ 532 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTL--KG---YALELITK 532 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhh--hc---chhhHHHH
Confidence 134588899999999999999999999999999999999999999999999886411111 11 15667788
Q ss_pred HHHHhCCcccccCCCC-----CcccchHHH--------HHHHhhhhHHHHHHHHHHHHHHc-CceEEEEecchhHHHHHH
Q 000903 576 LRKLCCHPYMLEGVEP-----DIEDTNESF--------KQLLESSGKLQLLDKMMVKLKEQ-GHRVLIYSQFQHMLDLLE 641 (1232)
Q Consensus 576 Lrk~c~hP~L~~~~e~-----~~~~~~~~~--------~~li~~S~Kl~~L~klL~~l~~~-g~KvLIFsq~~~~ldiL~ 641 (1232)
|+++|+||.|+...+. ......... ..-...|+|+..|..|+....+. -.++++.|+++.++|+++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHH
Confidence 9999999999841111 110111000 01122489999999999666554 356777788899999999
Q ss_pred HHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhc
Q 000903 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1232)
Q Consensus 642 ~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRi 721 (1232)
..++.+|+.++|+||+++..+|+.+|+.||++.+..||||+|++|||+||||.+|++||+||++|||+++.||++||+|.
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEeeCCcHHHHHHHHHHHHHHHHHHHhccc
Q 000903 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1232)
Q Consensus 722 GQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~~v~g~~ 760 (1232)
||+|+|+||||++.||+||+|++++..|..|-..|++..
T Consensus 693 GQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 693 GQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred CCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecc
Confidence 999999999999999999999999999999999998653
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=4.4e-68 Score=620.77 Aligned_cols=471 Identities=33% Similarity=0.512 Sum_probs=384.8
Q ss_pred CCCcHHHHHHHHHHHHhh---------cCCCceEEEcCCCCcHHHHHHHHHHHHhhC---CCCCeEEEeCCccHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRNWERE 351 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~---------~~~~~~ILaDemGLGKTiqaia~l~~l~~~---~~~p~LIV~P~sll~qW~~E 351 (1232)
..|+|||..||.||..+. ..|.|||||+-||||||+|+|+|+..++.. +...+|||||++++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 579999999999995443 358899999999999999999999988753 34599999999999999999
Q ss_pred HHHHcCCC------cEEEEEcCh--hHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc---
Q 000903 352 FATWAPQM------NVVMYVGTS--QARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--- 420 (1232)
Q Consensus 352 ~~~~~p~~------~vv~~~g~~--~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d--- 420 (1232)
|.+|.+++ .|..+...+ ..|..... .|+ ..--|+|+.|++++.-
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~-~W~------------------------~~ggVmIiGYdmyRnLa~g 801 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQ-RWQ------------------------EDGGVMIIGYDMYRNLAQG 801 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHH-HHH------------------------hcCCEEEEehHHHHHHhcc
Confidence 99999853 222222111 22211111 110 1125999999998653
Q ss_pred ------------ccccCCCceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCC
Q 000903 421 ------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1232)
Q Consensus 421 ------------~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~ 488 (1232)
...|..-..++||+||||-|||..|.+++++..+.+++||+|||||||||+.|++.+++|+.|+.+++
T Consensus 802 r~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs 881 (1567)
T KOG1015|consen 802 RNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGS 881 (1567)
T ss_pred cchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccC
Confidence 11233345789999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhh---------------HHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHH
Q 000903 489 LEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (1232)
Q Consensus 489 ~~~F~~~~~~~~~---------------~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~ 553 (1232)
..+|.++|.++-+ .....-|+++|..++-|+-...+.+.|||+.+++|.|.||+.|..+|...++
T Consensus 882 ~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 882 IKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred cHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 9999999965321 1234568999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH---hcCCcchhHHHHHHHHHHHhCCcccccC------------------CC-CCc------------------
Q 000903 554 RNYQILT---RRGGAQISLINVVMELRKLCCHPYMLEG------------------VE-PDI------------------ 593 (1232)
Q Consensus 554 ~~~~~l~---~~~~~~~~l~~il~~Lrk~c~hP~L~~~------------------~e-~~~------------------ 593 (1232)
.....-+ .+.|....|+.-+.-|+++.+||+...- .. ...
T Consensus 962 h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks 1041 (1567)
T KOG1015|consen 962 HLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKS 1041 (1567)
T ss_pred hccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccc
Confidence 3221111 1223456788888899999999986510 00 000
Q ss_pred -------------------------------------------c-------------------cchHHHHH--------H
Q 000903 594 -------------------------------------------E-------------------DTNESFKQ--------L 603 (1232)
Q Consensus 594 -------------------------------------------~-------------------~~~~~~~~--------l 603 (1232)
. .+.+.+.. .
T Consensus 1042 ~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v 1121 (1567)
T KOG1015|consen 1042 GKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEV 1121 (1567)
T ss_pred cccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhh
Confidence 0 00001111 2
Q ss_pred HhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhh----------------------CCCcEEEEeCCCCHH
Q 000903 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----------------------KKWQYERIDGKVGGA 661 (1232)
Q Consensus 604 i~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~----------------------~g~~~~ridG~~~~~ 661 (1232)
+..||||.+|..+|....+-|.|+|||||....||+|++||.. +|..|.||||+++..
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 3459999999999999999999999999999999999999953 467899999999999
Q ss_pred HHHHHHHHHhcCCCCc-eEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHH
Q 000903 662 ERQIRIDRFNAKNSSR-FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1232)
Q Consensus 662 eRq~~i~~Fn~~~s~~-~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE 740 (1232)
+|++..++||.+..-+ .+||||||||++||||-+|++|||||-.|||.-|+|++-|++|.||+|+|+||||++.||+|+
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEe 1281 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEE 1281 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHH
Confidence 9999999999987654 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccc-ccCCCHHHHHHHHHhchh
Q 000903 741 RMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGSK 779 (1232)
Q Consensus 741 ~i~~~~~~K~~l~~~v~g~~~-~~~~~~~el~~ll~~ga~ 779 (1232)
+||.|+-.|..+...|+++.. ...++.+||..|+.|...
T Consensus 1282 KIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1282 KIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPD 1321 (1567)
T ss_pred HHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCc
Confidence 999999999999999997653 346888999999887654
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-65 Score=568.47 Aligned_cols=469 Identities=30% Similarity=0.495 Sum_probs=379.3
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHH
Q 000903 274 YEHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1232)
Q Consensus 274 ~~~~P~~~~~~~L~pyQ~~gv~wL~~~~~-~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~ 352 (1232)
-.+||..+. ..|.|||++|+.|+...-. .-.|||||||||+|||||+|+++.. +-...|+|||||.-.+.||..||
T Consensus 174 ~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlmQW~nEI 250 (791)
T KOG1002|consen 174 RAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALMQWKNEI 250 (791)
T ss_pred cccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--ccccCCeeEEccHHHHHHHHHHH
Confidence 346676665 6799999999999976554 5788999999999999999999876 33345999999999999999999
Q ss_pred HHHc-CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc-----------
Q 000903 353 ATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------- 420 (1232)
Q Consensus 353 ~~~~-p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d----------- 420 (1232)
.+++ ..+++.+|||.+...++ . ....||||+|||..+-..
T Consensus 251 ~~~T~gslkv~~YhG~~R~~ni-k---------------------------el~~YDvVLTty~vvEs~yRk~~~GfrrK 302 (791)
T KOG1002|consen 251 ERHTSGSLKVYIYHGAKRDKNI-K---------------------------ELMNYDVVLTTYAVVESVYRKQDYGFRRK 302 (791)
T ss_pred HHhccCceEEEEEecccccCCH-H---------------------------HhhcCcEEEEecHHHHHHHHhcccccccc
Confidence 9998 56899999998765432 1 236799999999988432
Q ss_pred ------ccccCCCceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChH----
Q 000903 421 ------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE---- 490 (1232)
Q Consensus 421 ------~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~---- 490 (1232)
.+.|.+++|..||+||||.||+..|...+++..+.+.+||.|||||+||.+.|||+|++||..+.|..+-
T Consensus 303 ngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~c 382 (791)
T KOG1002|consen 303 NGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKC 382 (791)
T ss_pred CCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhc
Confidence 3457889999999999999999999999999999999999999999999999999999999988875320
Q ss_pred -----H--HHH----------------HHhh------------hhhHHHHHHHHHhhhhhhhhhhhhhHhh--cCCCcEE
Q 000903 491 -----E--FQE----------------EFKD------------INQEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKE 533 (1232)
Q Consensus 491 -----~--F~~----------------~~~~------------~~~~~~~~~L~~~L~p~~lRR~k~dv~~--~LP~k~e 533 (1232)
+ |.. +|.. -.........|.+|+.+|+||+|-.-.. .|||...
T Consensus 383 dc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv 462 (791)
T KOG1002|consen 383 DCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIV 462 (791)
T ss_pred cccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccce
Confidence 0 100 0000 0122455678999999999999954332 5899988
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHHHHHhc------CCcchhHHHHHHHHHHHhCCcccccCCC-----------------
Q 000903 534 LILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLCCHPYMLEGVE----------------- 590 (1232)
Q Consensus 534 ~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~------~~~~~~l~~il~~Lrk~c~hP~L~~~~e----------------- 590 (1232)
.+-.--++..+..+|+.+.......++.. ..+..+++.++.+|||+..||+|.-...
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc 542 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLC 542 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeeccc
Confidence 88888899999999999987655544431 1234567788999999999999863210
Q ss_pred -----CCcccc---------------------------------------------hHHHH----------HHHhhhhHH
Q 000903 591 -----PDIEDT---------------------------------------------NESFK----------QLLESSGKL 610 (1232)
Q Consensus 591 -----~~~~~~---------------------------------------------~~~~~----------~li~~S~Kl 610 (1232)
+.+... ...++ .-++.|.|+
T Consensus 543 ~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKI 622 (791)
T KOG1002|consen 543 HDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKI 622 (791)
T ss_pred CChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHH
Confidence 000000 00000 013468899
Q ss_pred HHHHHHHHHHHHcC--ceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccc
Q 000903 611 QLLDKMMVKLKEQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (1232)
Q Consensus 611 ~~L~klL~~l~~~g--~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg 688 (1232)
++|.+-|..+.++. -|.||||||+.|||+|.-.|...|++.+.+.|+|+...|..+|+.|.++... .|||+|.+|||
T Consensus 623 EAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c-~vfLvSLkAGG 701 (791)
T KOG1002|consen 623 EALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDC-RVFLVSLKAGG 701 (791)
T ss_pred HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCe-EEEEEEeccCc
Confidence 99999998887764 5899999999999999999999999999999999999999999999876554 45999999999
Q ss_pred cccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHHHHHHHhcccc--ccCCC
Q 000903 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--AQNIN 766 (1232)
Q Consensus 689 ~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~~v~g~~~--~~~~~ 766 (1232)
+.+||+.|++|+++||+|||+...||++|+|||||.++|.|.||+.++|||++|++++++|..+.++-+|... -..++
T Consensus 702 VALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt 781 (791)
T KOG1002|consen 702 VALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLT 781 (791)
T ss_pred eEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997652 23456
Q ss_pred HHHHHHHH
Q 000903 767 QEELDDII 774 (1232)
Q Consensus 767 ~~el~~ll 774 (1232)
.++|.-|+
T Consensus 782 ~eDmqfLF 789 (791)
T KOG1002|consen 782 EEDMQFLF 789 (791)
T ss_pred HHHHHHHh
Confidence 66665543
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.3e-64 Score=582.77 Aligned_cols=473 Identities=28% Similarity=0.511 Sum_probs=389.8
Q ss_pred cccCCCCCCCCCCCcHHHHHHHHHHHHhh-cCCCceEEEcCCCCcHHHHHHHHHHHHhhC-----C----CCCeEEEeCC
Q 000903 273 QYEHSPEFLSGGSLHPYQLEGLNFLRFSW-SKQTHVILADEMGLGKTIQSIAFLASLFGE-----R----ISPHLVVAPL 342 (1232)
Q Consensus 273 ~~~~~P~~~~~~~L~pyQ~~gv~wL~~~~-~~~~~~ILaDemGLGKTiqaia~l~~l~~~-----~----~~p~LIV~P~ 342 (1232)
.+.+.|..+. ..|+|||..|+.||.-.- ..+.||||||+||||||+++|+++.+-... + ..++|||||.
T Consensus 314 ~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa 392 (901)
T KOG4439|consen 314 DLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA 392 (901)
T ss_pred cccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH
Confidence 4556666665 789999999999995433 347789999999999999999999876531 1 1279999999
Q ss_pred ccHHHHHHHHHHHc--CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhh-
Q 000903 343 STLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL- 419 (1232)
Q Consensus 343 sll~qW~~E~~~~~--p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~- 419 (1232)
|++.||..|+++-. --+.|.+|||+.. |++ .. ....+||||||||..+..
T Consensus 393 Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~~-------------------------~~L~~YDvViTTY~lva~~ 445 (901)
T KOG4439|consen 393 SLIHQWEAEVARRLEQNALSVYLYHGPNK-REI-SA-------------------------KELRKYDVVITTYNLVANK 445 (901)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEecCCcc-ccC-CH-------------------------HHHhhcceEEEeeeccccC
Confidence 99999999998765 3488999999875 221 11 123589999999999866
Q ss_pred ---------cccccCCCceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChH
Q 000903 420 ---------DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE 490 (1232)
Q Consensus 420 ---------d~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~ 490 (1232)
....|..+.|.+||+||||.+||.+++.+.++..+++..||+|||||+||+.-|+|+|+.||....|++..
T Consensus 446 ~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~ 525 (901)
T KOG4439|consen 446 PDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLK 525 (901)
T ss_pred CchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHH
Confidence 24568889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhhHhh-----cCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHh----
Q 000903 491 EFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-----ELPPKKELILRVELSSKQKEYYKAILTRNYQILTR---- 561 (1232)
Q Consensus 491 ~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~---- 561 (1232)
.|.++..... .....++.-+.++.||||+|...-. .||++...++.++|+..+...|.-+++....++.+
T Consensus 526 ~Wke~i~~~s-~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~ 604 (901)
T KOG4439|consen 526 QWKENIDNMS-KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQ 604 (901)
T ss_pred HHHHhccCcc-ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888765332 2345567777899999999987765 79999999999999999999999888766555432
Q ss_pred ------cCC----------------------------c----chhHHHHHHHHHHHhCCcccccCCCCCcc---------
Q 000903 562 ------RGG----------------------------A----QISLINVVMELRKLCCHPYMLEGVEPDIE--------- 594 (1232)
Q Consensus 562 ------~~~----------------------------~----~~~l~~il~~Lrk~c~hP~L~~~~e~~~~--------- 594 (1232)
.++ + ...++..+++|||+|+||-+..+..+...
T Consensus 605 ~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~s 684 (901)
T KOG4439|consen 605 REDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDS 684 (901)
T ss_pred hhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchh
Confidence 000 0 01247788999999999976643321100
Q ss_pred --c-----------------------------chHHHHHHHhhhhHHHHHHHHHHHH-HHcCceEEEEecchhHHHHHHH
Q 000903 595 --D-----------------------------TNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLED 642 (1232)
Q Consensus 595 --~-----------------------------~~~~~~~li~~S~Kl~~L~klL~~l-~~~g~KvLIFsq~~~~ldiL~~ 642 (1232)
. ....+-.....|.|+..+...+..+ .....|++|.||++.+|+++..
T Consensus 685 de~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~ 764 (901)
T KOG4439|consen 685 DEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRK 764 (901)
T ss_pred hhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHH
Confidence 0 0001112234588998888888877 6678899999999999999999
Q ss_pred HHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcC
Q 000903 643 YLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (1232)
Q Consensus 643 ~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiG 722 (1232)
.|...|+.|..++|.+...+|+.+|+.||....+..|+|||..|||+||||+.|+++|++|..|||+...||.+|++|+|
T Consensus 765 hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 765 HIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred HHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeeCCcHHHHHHHHHHHHHHHHHHHhcccc---ccCCCHHHHHHHH
Q 000903 723 QTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK---AQNINQEELDDII 774 (1232)
Q Consensus 723 Q~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~~v~g~~~---~~~~~~~el~~ll 774 (1232)
|+|.|.||||+++||||++|...+.+|+.|+..|+.+.. ...++..+|..||
T Consensus 845 QkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 845 QKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLF 899 (901)
T ss_pred ccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHh
Confidence 999999999999999999999999999999999984332 3345566665553
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-64 Score=658.19 Aligned_cols=472 Identities=43% Similarity=0.726 Sum_probs=410.2
Q ss_pred CCCCCcHHHHHHHHHHH-HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC---CCCeEEEeCCccHHHHHHHHHHHcC
Q 000903 282 SGGSLHPYQLEGLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWEREFATWAP 357 (1232)
Q Consensus 282 ~~~~L~pyQ~~gv~wL~-~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~---~~p~LIV~P~sll~qW~~E~~~~~p 357 (1232)
...+|+|||++|++||. ..+..+.++||||+||+|||+|+|+++.+++... .+|+|||||.+++.||.+|+.+|.|
T Consensus 335 ~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~ 414 (866)
T COG0553 335 LSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAP 414 (866)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCc
Confidence 34789999999999999 8889999999999999999999999999865542 3699999999999999999999999
Q ss_pred CCc-EEEEEcChhH----HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhh---cccccCCCce
Q 000903 358 QMN-VVMYVGTSQA----RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIKW 429 (1232)
Q Consensus 358 ~~~-vv~~~g~~~~----r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~---d~~~l~~i~w 429 (1232)
.++ +.+++|.... +..+....... . ...|++++|||+.+.. +...+..+.|
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~v~itty~~l~~~~~~~~~l~~~~~ 473 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREALRDLLKLH-------------------L--VIIFDVVITTYELLRRFLVDHGGLKKIEW 473 (866)
T ss_pred cccceeeeeCCcccccHHHHHHHHHhhhc-------------------c--cceeeEEechHHHHHHhhhhHHHHhhcee
Confidence 999 9999998863 44443321100 0 2358999999999999 9999999999
Q ss_pred eEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHh-hhcCCCCC-ChHHHHHHHhhhh-------
Q 000903 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFG-SLEEFQEEFKDIN------- 500 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~-fL~p~~~~-~~~~F~~~~~~~~------- 500 (1232)
+++|+||||++||..+..++++..+++.++++|||||++|++.|||++++ |+.|..++ +...|..+|....
T Consensus 474 ~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~ 553 (866)
T COG0553 474 DRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIG 553 (866)
T ss_pred eeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999 99999999 5588999886432
Q ss_pred ----hHHHHHHHHHhhhhhhhhhhhhh--HhhcCCCcEEEEEeccCCHHHHHHHHHHHH---HHHHHHHhc--CC-----
Q 000903 501 ----QEEQISRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILT---RNYQILTRR--GG----- 564 (1232)
Q Consensus 501 ----~~~~~~~L~~~L~p~~lRR~k~d--v~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~---~~~~~l~~~--~~----- 564 (1232)
....+..|+.++.||++||+|.+ +...||++.+.++.|+|++.|..+|...+. ++...+... ..
T Consensus 554 ~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (866)
T COG0553 554 PLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENR 633 (866)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 12344558899999999999999 899999999999999999999999999999 666555442 11
Q ss_pred ---cchhHHHHHHHHHHHhCCcccccCC-CCCcc----------cchHHHHHHHhhh-hHHHHHHHHH-HHHHHcCc--e
Q 000903 565 ---AQISLINVVMELRKLCCHPYMLEGV-EPDIE----------DTNESFKQLLESS-GKLQLLDKMM-VKLKEQGH--R 626 (1232)
Q Consensus 565 ---~~~~l~~il~~Lrk~c~hP~L~~~~-e~~~~----------~~~~~~~~li~~S-~Kl~~L~klL-~~l~~~g~--K 626 (1232)
....+++.++.||++|+||.++... +.... ........++..| +|+..+.++| ..++..|+ |
T Consensus 634 ~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~k 713 (866)
T COG0553 634 IGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHK 713 (866)
T ss_pred ccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhccccc
Confidence 1567899999999999999998765 22211 1111123467788 9999999999 89999999 9
Q ss_pred EEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC
Q 000903 627 VLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW 706 (1232)
Q Consensus 627 vLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW 706 (1232)
|||||||+.++++|+++|...++.|+++||+++...|+.+|++|+++ ...+|||+|++|||.||||++|++||+||++|
T Consensus 714 vlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 714 VLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred EEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEecccc
Confidence 99999999999999999999999999999999999999999999997 55678999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHHHHHHHhcc-c--cccCCCHHHHHHHHH
Q 000903 707 NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR-L--KAQNINQEELDDIIR 775 (1232)
Q Consensus 707 Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~~v~g~-~--~~~~~~~~el~~ll~ 775 (1232)
||+.+.||++|+|||||++.|.||+|++++|+||+|++++..|+.+...+++. . ....++.+++..++.
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFS 864 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999874 2 233456666666654
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-57 Score=523.34 Aligned_cols=470 Identities=33% Similarity=0.519 Sum_probs=378.9
Q ss_pred CCCcHHHHHHHHHHH---------HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeCCccHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLR---------FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFA 353 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~---------~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P~sll~qW~~E~~ 353 (1232)
..++|||+-|++||. +.-..|-|||||+.||||||+|+|+|+..++... .+.+|+|+|-.||.||..||.
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhh
Confidence 369999999999984 2334688999999999999999999999988765 468999999999999999999
Q ss_pred HHcCCC-----------cEEEEEcCh---hHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhh
Q 000903 354 TWAPQM-----------NVVMYVGTS---QARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL 419 (1232)
Q Consensus 354 ~~~p~~-----------~vv~~~g~~---~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~ 419 (1232)
.|.|.+ .|.++.... ..|..+... | ...--|+++.|++++.
T Consensus 333 mWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~-W------------------------v~~GGVlLvGYemfRL 387 (1387)
T KOG1016|consen 333 MWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQ-W------------------------VQTGGVLLVGYEMFRL 387 (1387)
T ss_pred hhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHH-H------------------------hccCCEEEehHHHHHH
Confidence 999862 222222111 112211110 0 0112377777777643
Q ss_pred c--------------------------------------ccccCCCceeEEEEcCcccccCcccHHHHHHHhcccccEEE
Q 000903 420 D--------------------------------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVL 461 (1232)
Q Consensus 420 d--------------------------------------~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rll 461 (1232)
- ...|-.-..|+||+||+|||||..+.++.+|+.+++++|+.
T Consensus 388 L~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiV 467 (1387)
T KOG1016|consen 388 LILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIV 467 (1387)
T ss_pred HHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEE
Confidence 2 11222334689999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh----------h-----HHHHHHHHHhhhhhhhhhhhhhHhh
Q 000903 462 LTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------Q-----EEQISRLHRMLAPHLLRRVKKDVMK 526 (1232)
Q Consensus 462 LTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~----------~-----~~~~~~L~~~L~p~~lRR~k~dv~~ 526 (1232)
|||-|+|||+.|+|.++.|+.|+.+++..+|...|...- + ......||.+|..|+-||+...+.+
T Consensus 468 LTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~ 547 (1387)
T KOG1016|consen 468 LTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK 547 (1387)
T ss_pred EeccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh
Confidence 999999999999999999999999999999999996421 1 1234569999999999999999999
Q ss_pred cCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC-------CC---------
Q 000903 527 ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG-------VE--------- 590 (1232)
Q Consensus 527 ~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~-------~e--------- 590 (1232)
.||.+.|+++.|.||..|+++|+..+......+...+....+.+..+.-..|+.|||.++-. .+
T Consensus 548 ~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~ 627 (1387)
T KOG1016|consen 548 ILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEM 627 (1387)
T ss_pred hcccccceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHH
Confidence 99999999999999999999999998665554443333333445555556677789854310 00
Q ss_pred ------------------CC--------------------------------cccchH--------HHHHHHhhhhHHHH
Q 000903 591 ------------------PD--------------------------------IEDTNE--------SFKQLLESSGKLQL 612 (1232)
Q Consensus 591 ------------------~~--------------------------------~~~~~~--------~~~~li~~S~Kl~~ 612 (1232)
++ +....+ ....++.++.|+.+
T Consensus 628 ~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~ 707 (1387)
T KOG1016|consen 628 KFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVI 707 (1387)
T ss_pred hhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEE
Confidence 00 000000 01224556788888
Q ss_pred HHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhC------------------CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 000903 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------KWQYERIDGKVGGAERQIRIDRFNAKN 674 (1232)
Q Consensus 613 L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~------------------g~~~~ridG~~~~~eRq~~i~~Fn~~~ 674 (1232)
+.+++..-..-|.|+|||||....||+|+++|..+ ..+|.|+||.++..+|.++|++||.+.
T Consensus 708 ~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~ 787 (1387)
T KOG1016|consen 708 SLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP 787 (1387)
T ss_pred EEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC
Confidence 88888888888999999999999999999999764 346899999999999999999999999
Q ss_pred CCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHHHHH
Q 000903 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (1232)
Q Consensus 675 s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~ 754 (1232)
+-.+.||||||||..||||-+|+.+||||.-|||..+.||..|++|.||+|++.|||||+.+|+|.+|+.|+-.|.++.+
T Consensus 788 ~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsd 867 (1387)
T KOG1016|consen 788 GLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSD 867 (1387)
T ss_pred CceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccc-ccCCCHHHHHHHHHhch
Q 000903 755 LVVGRLK-AQNINQEELDDIIRYGS 778 (1232)
Q Consensus 755 ~v~g~~~-~~~~~~~el~~ll~~ga 778 (1232)
.|++... ..+++..|++.|+.+..
T Consensus 868 RvVDd~np~an~s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 868 RVVDDANPDANISQKELENLLMYDE 892 (1387)
T ss_pred hhhcccCccccccHHHHHHHhhhhh
Confidence 9998774 46899999999998764
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-55 Score=489.18 Aligned_cols=409 Identities=28% Similarity=0.443 Sum_probs=325.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHHcCCCcE-EE
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNV-VM 363 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~~p~~~v-v~ 363 (1232)
.|.|||++||+|. ...|++++||||||||||+|||+++.++..++ |.|||||.++...|..++.+|+|...- .+
T Consensus 198 ~LlPFQreGv~fa---L~RgGR~llADeMGLGKTiQAlaIA~yyraEw--plliVcPAsvrftWa~al~r~lps~~pi~v 272 (689)
T KOG1000|consen 198 RLLPFQREGVIFA---LERGGRILLADEMGLGKTIQALAIARYYRAEW--PLLIVCPASVRFTWAKALNRFLPSIHPIFV 272 (689)
T ss_pred hhCchhhhhHHHH---HhcCCeEEEecccccchHHHHHHHHHHHhhcC--cEEEEecHHHhHHHHHHHHHhcccccceEE
Confidence 5999999999875 46799999999999999999999999987775 999999999999999999999987554 22
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccCc
Q 000903 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK 443 (1232)
Q Consensus 364 ~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn~ 443 (1232)
..+..+. .++ -....-|.|+||+++......|..-+|.+||+||+|.||+.
T Consensus 273 v~~~~D~----------~~~-------------------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~s 323 (689)
T KOG1000|consen 273 VDKSSDP----------LPD-------------------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDS 323 (689)
T ss_pred EecccCC----------ccc-------------------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhcc
Confidence 2222211 000 11234589999999999999999999999999999999999
Q ss_pred ccHHHHHHHhc--ccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh---------hHHHHHHHHHhh
Q 000903 444 DSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---------QEEQISRLHRML 512 (1232)
Q Consensus 444 ~S~~~~~l~~l--~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~---------~~~~~~~L~~~L 512 (1232)
.++..+++..+ ...|.|||||||--..+.|||.++..+++..|+++.+|...|.+.. .-.+..+|+-+|
T Consensus 324 ktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL 403 (689)
T KOG1000|consen 324 KTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALL 403 (689)
T ss_pred chhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHH
Confidence 99999988877 4789999999999999999999999999999999999999997533 334677888877
Q ss_pred h-hhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCC
Q 000903 513 A-PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1232)
Q Consensus 513 ~-p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~ 591 (1232)
. ..|+||+|.+|+++||||...++.+ ....+-..-+.+...... +.. .+ .|+-.+.|- .
T Consensus 404 ~k~lMIRRlK~dvL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~------~t~---~~-~~e~~~~~l----~----- 463 (689)
T KOG1000|consen 404 FKRLMIRRLKADVLKQLPPKRREVVYV-SGGRIDARMDDLVKAAAD------YTK---VN-SMERKHESL----L----- 463 (689)
T ss_pred HHHHHHHHHHHHHHhhCCccceEEEEE-cCCccchHHHHHHHHhhh------cch---hh-hhhhhhHHH----H-----
Confidence 4 5699999999999999995555544 444443333333332211 000 00 011011100 0
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHH----HHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHH
Q 000903 592 DIEDTNESFKQLLESSGKLQLLDKMMVK----LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1232)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~----l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i 667 (1232)
..+. ...-.|+..+.+.|-. ..+.+.|+|||+.+..+||-|+.++..+++.++||||++++.+|+.++
T Consensus 464 ------l~y~--~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~ 535 (689)
T KOG1000|consen 464 ------LFYS--LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLC 535 (689)
T ss_pred ------HHHH--HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHH
Confidence 0000 0122355555555444 345688999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHH
Q 000903 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1232)
Q Consensus 668 ~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~ 747 (1232)
+.|+.... ..|-+||..|+|+||+|++|+.|||.+..|||...+||.+|+|||||+..|.||+|++++|+|+.++....
T Consensus 536 qsFQ~see-v~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 536 QSFQTSEE-VRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred HHhccccc-eEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 99987544 44578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000903 748 KKMVLEHLV 756 (1232)
Q Consensus 748 ~K~~l~~~v 756 (1232)
+|+.....+
T Consensus 615 ~KL~vl~s~ 623 (689)
T KOG1000|consen 615 QKLDVLGSV 623 (689)
T ss_pred HHHHHHhhc
Confidence 998765444
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=8.1e-53 Score=531.25 Aligned_cols=417 Identities=19% Similarity=0.276 Sum_probs=322.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeCCccHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P~sll~qW~~E~~~~~p~~~vv 362 (1232)
..|.|||+..+..+... ...++|||||||||||++|++++..+...+ .+|+|||||.+++.||..|+.+|+ ++.+.
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 56999999998776443 467899999999999999999999887665 469999999999999999998887 56777
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc---cccCCCceeEEEEcCccc
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~---~~l~~i~w~~vIvDEaHr 439 (1232)
++.+...... . .. .......++++|+||+.+..+. ..+....|++|||||||+
T Consensus 228 i~~~~~~~~~-------~-~~----------------~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 228 LFDEERYAEA-------Q-HD----------------ADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred EEcCcchhhh-------c-cc----------------ccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 7765532210 0 00 0012235789999999998754 446677999999999999
Q ss_pred ccC---cccHHHHHHHhc--ccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhh---hh-----------
Q 000903 440 LKN---KDSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---IN----------- 500 (1232)
Q Consensus 440 lKn---~~S~~~~~l~~l--~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~---~~----------- 500 (1232)
+++ ..|+.++.+..+ .+.++|+|||||+||+..|+|++|+||+|+.|+++..|.+.... +.
T Consensus 284 lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 284 LVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred hccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 995 356778888887 46799999999999999999999999999999999999865421 10
Q ss_pred -hHHHHHHHHHh---------------------------h---------hhhhhhhhhhhHhhcCCCcEEEEEeccCCHH
Q 000903 501 -QEEQISRLHRM---------------------------L---------APHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1232)
Q Consensus 501 -~~~~~~~L~~~---------------------------L---------~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~ 543 (1232)
.......|..+ + .++|+|+++++|. .+|++..+.+.++|.+.
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ 442 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH
Confidence 01111122111 1 2568889999876 68999999999999764
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCccc-ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000903 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM-LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (1232)
Q Consensus 544 Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L-~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~ 622 (1232)
|........ ...++++ .+|.. +.... ........++|+..|.++|..+
T Consensus 443 ----y~~~~~~~~----------------~~~~~~~-l~pe~~~~~~~--------~~~~~~~~d~Ki~~L~~~L~~~-- 491 (956)
T PRK04914 443 ----YQTAIKVSL----------------EARARDM-LYPEQIYQEFE--------DNATWWNFDPRVEWLIDFLKSH-- 491 (956)
T ss_pred ----HHHHHHHhH----------------HHHHHhh-cCHHHHHHHHh--------hhhhccccCHHHHHHHHHHHhc--
Confidence 333221100 0111221 12210 00000 0011234568999999988775
Q ss_pred cCceEEEEecchhHHHHHHHHH-hhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEE
Q 000903 623 QGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1232)
Q Consensus 623 ~g~KvLIFsq~~~~ldiL~~~L-~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi 701 (1232)
.+.||||||++..+++.|.+.| ...|+++..++|+++..+|+++++.|++++.+ ..|||+|.+||+|+||+.|++||+
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~-~~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG-AQVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC-ccEEEechhhccCCCcccccEEEE
Confidence 3789999999999999999999 56799999999999999999999999875433 247899999999999999999999
Q ss_pred EcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHHHHHHHhccc
Q 000903 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1232)
Q Consensus 702 ~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~~v~g~~ 760 (1232)
||+||||..++||+||+||+||++.|.||.+++++|+|+.|++...+|+.+...+++..
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~ 629 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTG 629 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCH
Confidence 99999999999999999999999999999999999999999999999998877776543
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.9e-48 Score=472.74 Aligned_cols=437 Identities=30% Similarity=0.495 Sum_probs=357.5
Q ss_pred HHHHHHHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC--------CCCeEEEeCCccHHHHHHHHHHHc--
Q 000903 288 PYQLEGLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGER--------ISPHLVVAPLSTLRNWEREFATWA-- 356 (1232)
Q Consensus 288 pyQ~~gv~wL~~-~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~--------~~p~LIV~P~sll~qW~~E~~~~~-- 356 (1232)
.+|..+..|+.. .+..-.|||+||+||+|||+++|+++....... .+..|||||.+++.||..|+.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 566666555532 334567899999999999999999887764332 237899999999999999996666
Q ss_pred CCCcEEEEEc-ChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEc
Q 000903 357 PQMNVVMYVG-TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1232)
Q Consensus 357 p~~~vv~~~g-~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvD 435 (1232)
..+.+.+|+| .+.. ....+++||||||.++.. ..+..+.|-.||+|
T Consensus 215 ~~l~v~v~~gr~kd~-------------------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riild 261 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLD 261 (674)
T ss_pred cceEEEEeccccccc-------------------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEec
Confidence 3577888888 2211 123578899999999975 66777999999999
Q ss_pred CcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh---h-HHHHHHHHHh
Q 000903 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---Q-EEQISRLHRM 511 (1232)
Q Consensus 436 EaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~---~-~~~~~~L~~~ 511 (1232)
|||.++|.+++.++++..+.+.+||.|||||+||++.|||+++.|+.-+.+.....|...+.... . ...+..++.+
T Consensus 262 ea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~ 341 (674)
T KOG1001|consen 262 EAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGI 341 (674)
T ss_pred cccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888887775432 2 4667889999
Q ss_pred hhhhhhhhhhhhH-----hhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhc------CCcchhHHHHHHHHHHHh
Q 000903 512 LAPHLLRRVKKDV-----MKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLC 580 (1232)
Q Consensus 512 L~p~~lRR~k~dv-----~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~------~~~~~~l~~il~~Lrk~c 580 (1232)
|.++++||+|..- .-.|||+...++.+.++..++.+|+.+........... ......++..+.+||++|
T Consensus 342 L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c 421 (674)
T KOG1001|consen 342 LKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQAC 421 (674)
T ss_pred HHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHc
Confidence 9999999999632 23799999999999999999999999988766554331 223455677788999999
Q ss_pred CCcccccCCCCCcc----cchH--------------------------------------------------------HH
Q 000903 581 CHPYMLEGVEPDIE----DTNE--------------------------------------------------------SF 600 (1232)
Q Consensus 581 ~hP~L~~~~e~~~~----~~~~--------------------------------------------------------~~ 600 (1232)
+||.+.-....... .... ..
T Consensus 422 ~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 422 DHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 99987631110000 0000 00
Q ss_pred HHHHh-------------hhhHHHHHHHHHHHHHHcCc-eEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHH
Q 000903 601 KQLLE-------------SSGKLQLLDKMMVKLKEQGH-RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1232)
Q Consensus 601 ~~li~-------------~S~Kl~~L~klL~~l~~~g~-KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~ 666 (1232)
..++. .|.|+..+.++|........ ++|||||++.++++++-.|...++.+.+++|.++...|.+.
T Consensus 502 ~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 502 KKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred HHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhh
Confidence 11111 26777778888875544444 99999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHH
Q 000903 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1232)
Q Consensus 667 i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~ 746 (1232)
+..|+. +...-+.|+|.+|||.|+||+.|++||++||+|||....||++||||+||+++|.|+||++++|+||+|++++
T Consensus 582 ~~~~~~-~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 582 FTDFPC-DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hccccc-CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 999994 4445568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 000903 747 KKKMVLEHLVVG 758 (1232)
Q Consensus 747 ~~K~~l~~~v~g 758 (1232)
++|..+.....|
T Consensus 661 ~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 661 EKKREYNASAFG 672 (674)
T ss_pred HHHHHHHhhhcc
Confidence 999998877654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=7.7e-41 Score=383.44 Aligned_cols=272 Identities=42% Similarity=0.704 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHhh---------cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCC----CCeEEEeCCccHHHHHHHHHHH
Q 000903 289 YQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 289 yQ~~gv~wL~~~~---------~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~----~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
||++||+||+..+ ...+|||||||||+|||+++++++.++..... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 78899999999999999999999998876543 2699999999999999999999
Q ss_pred c-C-CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHh-----hcccccCCCc
Q 000903 356 A-P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-----LDSASLKPIK 428 (1232)
Q Consensus 356 ~-p-~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~-----~d~~~l~~i~ 428 (1232)
+ | .+++++|.|....+.. .......++++|+||+.+. .....+..++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~--------------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~ 134 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL--------------------------SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIK 134 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT--------------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSE
T ss_pred cccccccccccccccccccc--------------------------cccccccceeeecccccccccccccccccccccc
Confidence 9 4 6889998888722211 0112357899999999999 6677788899
Q ss_pred eeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhh---hhhHHHH
Q 000903 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQI 505 (1232)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~---~~~~~~~ 505 (1232)
|++|||||+|++||..+..++++..+.+.++|+|||||++|++.|||++++||.|+.+.+...|...|.. .......
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~ 214 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI 214 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH
T ss_pred ceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998843 3456788
Q ss_pred HHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcC----CcchhHHHHHHHHHHHhC
Q 000903 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG----GAQISLINVVMELRKLCC 581 (1232)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~----~~~~~l~~il~~Lrk~c~ 581 (1232)
..|..+++++++||++.++...+|+..+.++.|+||+.|++.|+.+.......+.... .....++..+++||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 9999999999999999999889999999999999999999999998887766554433 334578899999999999
Q ss_pred Ccccc
Q 000903 582 HPYML 586 (1232)
Q Consensus 582 hP~L~ 586 (1232)
||+|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99974
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.7e-37 Score=378.31 Aligned_cols=341 Identities=16% Similarity=0.261 Sum_probs=254.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCcc-HHHHHHHHHHHc--C
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWA--P 357 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~--~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sl-l~qW~~E~~~~~--p 357 (1232)
..+|||||.++++++. .++ ++|||.++||+|||+++++++..+ .+++|||||.+. +.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~---~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHH---hcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 4789999999998873 333 579999999999999999988765 258999999765 789999999997 3
Q ss_pred CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc----------ccccCCC
Q 000903 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPI 427 (1232)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d----------~~~l~~i 427 (1232)
...+..|+|....+ .....+|+|+||+++... ...|...
T Consensus 326 ~~~I~~~tg~~k~~-------------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~ 374 (732)
T TIGR00603 326 DSQICRFTSDAKER-------------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNR 374 (732)
T ss_pred CceEEEEecCcccc-------------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccc
Confidence 45666677653221 012357999999998643 1235556
Q ss_pred ceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhh-cCCCCCChHHHHHHHhhhhhHHHHH
Q 000903 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQIS 506 (1232)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL-~p~~~~~~~~F~~~~~~~~~~~~~~ 506 (1232)
.|++||+||||++.+ ....+.+..+.+.+||+|||||++++- .+..+.++ .|..+
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vy-------------------- 430 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLY-------------------- 430 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeee--------------------
Confidence 899999999999964 334456777889999999999998762 23333332 33332
Q ss_pred HHHHhhhhhhhhhhhhhHh--hcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcc
Q 000903 507 RLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1232)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~--~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~ 584 (1232)
+....++. ..|.+.....|+|+|++.....|.. .. .. .+..
T Consensus 431 -----------e~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~---~~-------~~-----------~k~~----- 473 (732)
T TIGR00603 431 -----------EANWMELQKKGFIANVQCAEVWCPMTPEFYREYLR---EN-------SR-----------KRML----- 473 (732)
T ss_pred -----------ecCHHHHHhCCccccceEEEEEecCCHHHHHHHHH---hc-------ch-----------hhhH-----
Confidence 11112222 3567778889999999875444421 10 00 0000
Q ss_pred cccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHH
Q 000903 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1232)
Q Consensus 585 L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq 664 (1232)
....+..|+..+..++......|+|+||||+++..++.+...|. ...|+|+++..+|.
T Consensus 474 -----------------l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~ 531 (732)
T TIGR00603 474 -----------------LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERM 531 (732)
T ss_pred -----------------HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHH
Confidence 01124568888888888766789999999999999888888773 34589999999999
Q ss_pred HHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC-ChhhHHHHHHhhhhcCCCCc-----eEEEEEeeCCcH
Q 000903 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNK-----VMIFRLITRGSI 738 (1232)
Q Consensus 665 ~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW-Np~~~~Qa~gR~hRiGQ~k~-----V~Vyrlvt~~Tv 738 (1232)
+++++|+.++ .+.+|++|++|++||||+.|++||++++++ |+..++||+||+.|.+..+. ..+|.||+++|.
T Consensus 532 ~il~~Fr~~~--~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 532 QILQNFQHNP--KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHhCC--CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999997532 334688889999999999999999999986 99999999999999997654 789999999999
Q ss_pred HHHHHHHH
Q 000903 739 EERMMQMT 746 (1232)
Q Consensus 739 EE~i~~~~ 746 (1232)
|+..-.+-
T Consensus 610 E~~~s~~R 617 (732)
T TIGR00603 610 EMYYSTKR 617 (732)
T ss_pred HHHHHHHH
Confidence 98875443
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.7e-33 Score=358.16 Aligned_cols=430 Identities=17% Similarity=0.208 Sum_probs=282.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcC--CCc
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p--~~~ 360 (1232)
.++|+||.+.+..+. . .++|++++||+|||++++.++..++....+++|||||. .++.||..+|.+++. ...
T Consensus 14 ~~~r~yQ~~~~~~~l----~-~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 14 IEARLYQQLLAATAL----K-KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CCccHHHHHHHHHHh----c-CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 578999999887652 2 38999999999999999988887775555799999997 677899999998873 347
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeEEEEcCcc
Q 000903 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~vIvDEaH 438 (1232)
+++++|......... + ....+|+|+|++.+..+. ..+..-.|++|||||||
T Consensus 89 v~~~~g~~~~~~r~~---~------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 89 IVVFTGEVSPEKRAE---L------------------------WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEEEeCCCCHHHHHH---H------------------------HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 888888654322111 1 124579999999987653 23334478999999999
Q ss_pred cccCcccHHHHHHHhc---ccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHH----HHHHh-------hhhhHHH
Q 000903 439 RLKNKDSKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF----QEEFK-------DINQEEQ 504 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~l---~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F----~~~~~-------~~~~~~~ 504 (1232)
++.+..+..+.+-... ...++++|||||.++ ...+..+++-|....+..+..| ...+. ...-...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH
Confidence 9987765544332222 234589999999765 5666666666653332211111 11111 1222355
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhc-CCCcEEEEEeccCCHHHHHHHHHHHHHHH---HHH---------Hh-----cCCcc
Q 000903 505 ISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNY---QIL---------TR-----RGGAQ 566 (1232)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~~-LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~---~~l---------~~-----~~~~~ 566 (1232)
+..++..|..++.++.+...... .++....+....+...+..++..+..... ..+ .. .....
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 67788888888887777644222 22222111222222333332222211000 000 00 00001
Q ss_pred hhHHHHHHHHHHHhCCcccccCCCCCcccch------HHHHHHHhhhhHHHHHHHHHHHHH--HcCceEEEEecchhHHH
Q 000903 567 ISLINVVMELRKLCCHPYMLEGVEPDIEDTN------ESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLD 638 (1232)
Q Consensus 567 ~~l~~il~~Lrk~c~hP~L~~~~e~~~~~~~------~~~~~li~~S~Kl~~L~klL~~l~--~~g~KvLIFsq~~~~ld 638 (1232)
..+...+..++....++....... ...... .....+...++|+..|.++|.... ..+.|+||||++.++++
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~ 379 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKASK-RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAE 379 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHHH-HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHH
Confidence 112222222222211110000000 000000 011222345789999999998876 46899999999999999
Q ss_pred HHHHHHhhCCCcEEEEeCC--------CCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhh
Q 000903 639 LLEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 710 (1232)
Q Consensus 639 iL~~~L~~~g~~~~ridG~--------~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~ 710 (1232)
.|.++|...|+++.+++|. ++..+|+.++++|+.+. +.+|++|.++++|+|++.+++||+||++|||..
T Consensus 380 ~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~---~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r 456 (773)
T PRK13766 380 KIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE---FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIR 456 (773)
T ss_pred HHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC---CCEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 9999999999999999997 78889999999998754 348999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHHHH
Q 000903 711 DLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1232)
Q Consensus 711 ~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~ 753 (1232)
++|+.||++|.|+ +.||.|++++|+||.++....+|....
T Consensus 457 ~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 457 SIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred HHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9998888877765 778999999999999988776665544
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=5.8e-29 Score=283.14 Aligned_cols=422 Identities=18% Similarity=0.211 Sum_probs=269.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHc--CCCc
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~--p~~~ 360 (1232)
.+.|.||..-+.-. -.+|++++..+|||||++|+.++...+....+.+|+++|+ .++.|-..-+.+.+ |...
T Consensus 14 ie~R~YQ~~i~a~a-----l~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKA-----LFKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHH-----hhcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 46889999876543 2349999999999999999999987777666699999995 67788888888887 6688
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeEEEEcCcc
Q 000903 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~vIvDEaH 438 (1232)
++.++|.-....... .+.+-.|+++|++++..|. ..+..-.+.+||+||||
T Consensus 89 i~~ltGev~p~~R~~---------------------------~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 89 IAALTGEVRPEEREE---------------------------LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred eeeecCCCChHHHHH---------------------------HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh
Confidence 899999754322111 1235579999999998874 34455578899999999
Q ss_pred cccCcccHHHHHHHh--ccc-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCC----ChHHHHHHH-------hhhhhHHH
Q 000903 439 RLKNKDSKLFSSLKQ--YST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFG----SLEEFQEEF-------KDINQEEQ 504 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~--l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~----~~~~F~~~~-------~~~~~~~~ 504 (1232)
|.-++.+-.+-+-.- ... .+.|+||||| -++.+.+...+.=|..+... ...+-.... -.+.-...
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 998877755544333 333 3678999999 46666666666655544321 111111110 01122233
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHhCCc
Q 000903 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG-GAQISLINVVMELRKLCCHP 583 (1232)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~-~~~~~l~~il~~Lrk~c~hP 583 (1232)
+..+.+.|+..+-.|++.--... .+....++ .++.+.... .......... ...-.++.++..+-++ .|+
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~~g-----~~~~~~~~--~~kdl~~~~--~~~~~~a~~~~~~~~~~l~~~a~~~kl-~~a 290 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKELG-----VIESSSPV--SKKDLLELR--QIRLIMAKNEDSDKFRLLSVLAEAIKL-AHA 290 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-----ceeccCcc--cHhHHHHHH--HHHHHhccCccHHHHHHHHHHHHHHHH-HHH
Confidence 33344444333322222211100 11111110 122222222 0000000000 0000111111111110 010
Q ss_pred --------------cccc---CCCC-Cc---------ccchHHHHHH------HhhhhHHHHHHHHHHHHH--HcCceEE
Q 000903 584 --------------YMLE---GVEP-DI---------EDTNESFKQL------LESSGKLQLLDKMMVKLK--EQGHRVL 628 (1232)
Q Consensus 584 --------------~L~~---~~e~-~~---------~~~~~~~~~l------i~~S~Kl~~L~klL~~l~--~~g~KvL 628 (1232)
||.. .... .. ......+..+ --..+||..+.+++.+.. ..+.|||
T Consensus 291 ~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvI 370 (542)
T COG1111 291 LELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVI 370 (542)
T ss_pred HHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEE
Confidence 0100 0000 00 0000111111 113689999999999876 5678999
Q ss_pred EEecchhHHHHHHHHHhhCCCcEE-EEeC--------CCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEE
Q 000903 629 IYSQFQHMLDLLEDYLTFKKWQYE-RIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1232)
Q Consensus 629 IFsq~~~~ldiL~~~L~~~g~~~~-ridG--------~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~V 699 (1232)
||++|.++++.|.++|...|.... ++-| +|++.+..++|++|.++.- -+|++|..|.+|||++++|.|
T Consensus 371 VFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~---nVLVaTSVgEEGLDIp~vDlV 447 (542)
T COG1111 371 VFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY---NVLVATSVGEEGLDIPEVDLV 447 (542)
T ss_pred EEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc---eEEEEcccccccCCCCcccEE
Confidence 999999999999999999998886 6666 4788899999999987554 489999999999999999999
Q ss_pred EEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHHHHH
Q 000903 700 IIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEH 754 (1232)
Q Consensus 700 Ii~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~l~~ 754 (1232)
|+|||.=+|-..+||+||.+| ++.-.||-|+++||-|+.-+..+.+|..-..
T Consensus 448 ifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 448 IFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred EEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 4778899999999999999999988865433
No 24
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.97 E-value=5e-30 Score=314.45 Aligned_cols=256 Identities=25% Similarity=0.448 Sum_probs=196.6
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHh------------hC-----CCCCeEEEeCCccHHHHHHHHHHHcCCC-cEEE
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLF------------GE-----RISPHLVVAPLSTLRNWEREFATWAPQM-NVVM 363 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~------------~~-----~~~p~LIV~P~sll~qW~~E~~~~~p~~-~vv~ 363 (1232)
..|..+++|||||+|||...++....-. .. ..|.+|||||.+++.||-.||.++++.. .|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 4466789999999999998876654322 11 1257899999999999999999999776 9999
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc----------------------
Q 000903 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---------------------- 421 (1232)
Q Consensus 364 ~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~---------------------- 421 (1232)
|.|....-- . .......+|||+|||+.++.+.
T Consensus 452 Y~Girk~~~--------~------------------~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 452 YFGIRKTFW--------L------------------SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred Eechhhhcc--------c------------------CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCC
Confidence 999764311 0 0123468999999999997752
Q ss_pred cccCCCceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh-
Q 000903 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN- 500 (1232)
Q Consensus 422 ~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~- 500 (1232)
+.|-.+.|-.||+|||+-+....|...+.+..+.+.++|.+||||+|+ +.+||.||.||.-.+|.....|.+.....-
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 234446799999999999999999999999999999999999999999 999999999999999999888876653211
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHhh--cCCCcEEEEEeccCCHHHHHHHHHHHH----HHHHH---HHhc-----C-C-
Q 000903 501 QEEQISRLHRMLAPHLLRRVKKDVMK--ELPPKKELILRVELSSKQKEYYKAILT----RNYQI---LTRR-----G-G- 564 (1232)
Q Consensus 501 ~~~~~~~L~~~L~p~~lRR~k~dv~~--~LP~k~e~~v~v~ls~~Q~~~Y~~il~----~~~~~---l~~~-----~-~- 564 (1232)
.......+++++...+-|+.|.+|.. .+||-.+.+....+++.+..+|+.... ..... +.+. . +
T Consensus 585 ~ra~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~ 664 (1394)
T KOG0298|consen 585 LRAKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLA 664 (1394)
T ss_pred HHhhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccc
Confidence 11334567888899999999998876 479988888888999888777765432 22211 2110 1 0
Q ss_pred -----cchhHHHHHHHHHHHhCCcc
Q 000903 565 -----AQISLINVVMELRKLCCHPY 584 (1232)
Q Consensus 565 -----~~~~l~~il~~Lrk~c~hP~ 584 (1232)
....+++-+.+||++|+||-
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPL 689 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhcccc
Confidence 12356778899999999984
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=2.8e-28 Score=292.37 Aligned_cols=362 Identities=20% Similarity=0.287 Sum_probs=269.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCC-c
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM-N 360 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~-~ 360 (1232)
..+|||||.++++-+...+...+.+++...+|.|||+.++.++..+... +|||||. .++.||...+.+++... .
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~----~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS----TLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC----EEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 3679999999997766666668899999999999999999998876444 9999995 67799998888887432 3
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCcccccccccccc-ccEEEecHHHHhhcc--cccCCCceeEEEEcCc
Q 000903 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIK-FDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1232)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~VlItsye~l~~d~--~~l~~i~w~~vIvDEa 437 (1232)
+-.+.|.... .. ..|.|+||+++.+.. ..+..-.|++||+||+
T Consensus 110 ~g~~~~~~~~----------------------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 110 IGIYGGGEKE----------------------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred cceecCceec----------------------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 3333333211 11 469999999998853 3333337999999999
Q ss_pred ccccCcccHHHHHHHhccccc-EEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhh
Q 000903 438 HRLKNKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1232)
Q Consensus 438 HrlKn~~S~~~~~l~~l~~~~-rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~ 516 (1232)
|++....... .+..+...+ +|+|||||...+...+. .+...+.|.+
T Consensus 156 Hh~~a~~~~~--~~~~~~~~~~~LGLTATp~R~D~~~~~-------------------------------~l~~~~g~~v 202 (442)
T COG1061 156 HHLPAPSYRR--ILELLSAAYPRLGLTATPEREDGGRIG-------------------------------DLFDLIGPIV 202 (442)
T ss_pred ccCCcHHHHH--HHHhhhcccceeeeccCceeecCCchh-------------------------------HHHHhcCCeE
Confidence 9987655443 333344455 99999999643322222 2333333333
Q ss_pred hhhhhhhHh--hcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000903 517 LRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1232)
Q Consensus 517 lRR~k~dv~--~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~ 594 (1232)
......+.. ..|.|.....+.+.++......|.....+....+..... . .
T Consensus 203 y~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~------~----------------------~ 254 (442)
T COG1061 203 YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT------L----------------------R 254 (442)
T ss_pred eecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh------h----------------------h
Confidence 333333332 368899999999999999988888776665544432221 0 0
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 000903 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1232)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~ 674 (1232)
..............|+..+..++.... ++.+++||+..+...+.|...+...|+ ...++|.++..+|.++++.|..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 011112333445678888888888766 799999999999999999999998888 999999999999999999998755
Q ss_pred CCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhc-CCCCc--eEEEEEeeCCcHHHHHHHHHHH
Q 000903 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL-GQTNK--VMIFRLITRGSIEERMMQMTKK 748 (1232)
Q Consensus 675 s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRi-GQ~k~--V~Vyrlvt~~TvEE~i~~~~~~ 748 (1232)
+.+|++++.+++|+|++.|+++|+..|.-++..++|++||+.|. ..++. +..|-+++..+.+..+......
T Consensus 333 ---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 333 ---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 45899999999999999999999999999999999999999994 44444 7788888888888877665554
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=1.4e-27 Score=291.92 Aligned_cols=336 Identities=13% Similarity=0.160 Sum_probs=230.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHc--CCC
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~--p~~ 359 (1232)
...|+|||.+++.-+. .+.++||...||+|||++++.++..+.....+++|||||. .++.||..+|.+|. |..
T Consensus 112 ~~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 3689999999986542 4567899999999999988776666555555599999996 77899999999986 333
Q ss_pred cEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCccc
Q 000903 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1232)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHr 439 (1232)
.+....|... .....+|+|+|++.+......+ --.+++|||||||+
T Consensus 188 ~~~~i~~g~~---------------------------------~~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~ 233 (501)
T PHA02558 188 AMHKIYSGTA---------------------------------KDTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHL 233 (501)
T ss_pred ceeEEecCcc---------------------------------cCCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhc
Confidence 3322222211 0124579999999987543221 12678999999999
Q ss_pred ccCcccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhhh
Q 000903 440 LKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLR 518 (1232)
Q Consensus 440 lKn~~S~~~~~l~~l-~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lR 518 (1232)
+... .....+..+ .+.++++|||||-...... ..+..++.|-. .+
T Consensus 234 ~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~~-~~~~~~fG~i~-------------------------------~~ 279 (501)
T PHA02558 234 FTGK--SLTSIITKLDNCKFKFGLTGSLRDGKANI-LQYVGLFGDIF-------------------------------KP 279 (501)
T ss_pred ccch--hHHHHHHhhhccceEEEEeccCCCccccH-HHHHHhhCCce-------------------------------EE
Confidence 9753 344555666 4778999999995332211 11111111110 00
Q ss_pred hhhhhHh--hcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcccc
Q 000903 519 RVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (1232)
Q Consensus 519 R~k~dv~--~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~~~ 596 (1232)
-...++. ..+.+.....+.+..++.....+ . .. .+
T Consensus 280 v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~-----------~--~~---~~--------------------------- 316 (501)
T PHA02558 280 VTTSQLMEEGQVTDLKINSIFLRYPDEDRVKL-----------K--GE---DY--------------------------- 316 (501)
T ss_pred ecHHHHHhCCCcCCceEEEEeccCCHHHhhhh-----------c--cc---ch---------------------------
Confidence 0001111 12223333444454443211100 0 00 00
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 000903 597 NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSS 676 (1232)
Q Consensus 597 ~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~ 676 (1232)
...+..+.....+..++.+++..+...|+++|||+..+..++.|.+.|...|+++..++|+++.++|..+++.|+.+.
T Consensus 317 ~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~-- 394 (501)
T PHA02558 317 QEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK-- 394 (501)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--
Confidence 011122333455666777777777778999999999999999999999999999999999999999999999997532
Q ss_pred ceEEEeec-cccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCC-ceEEEEEeeCC
Q 000903 677 RFCFLLST-RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRG 736 (1232)
Q Consensus 677 ~~v~LlsT-ragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k-~V~Vyrlvt~~ 736 (1232)
.. +||+| +..|+|+|++.+|+||+++|.-+...++|++||++|.|..| .+.||.++-.-
T Consensus 395 ~~-vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 395 GI-IIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred Ce-EEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 23 45555 99999999999999999999999999999999999998765 68999999643
No 27
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=99.95 E-value=3.5e-28 Score=234.58 Aligned_cols=132 Identities=57% Similarity=0.958 Sum_probs=122.2
Q ss_pred CCCCCcccccccCCCCCCCCccccccchhccCCChhHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHHHh
Q 000903 937 PGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTH 1016 (1232)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~pLte~e~~~l~~~GF~~~~rr~F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~~F~~~ 1016 (1232)
..++|++++.+ ++.+++||++++++++.|+||+..||+.|++++||||+++++|.|+.++|.+||.+||++|+.+||.|
T Consensus 10 ~~r~~~rkk~r-~~~~~pPLm~~~g~~l~VlGFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~H 88 (145)
T PF06461_consen 10 TGRRPSRKKRR-DNKDPPPLMAGVGGQLEVLGFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMRH 88 (145)
T ss_pred ccccccccccc-cCCCCCCccccCCCceEEeccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHHH
Confidence 44556666655 55566999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccC-CCcccCCCccCccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc
Q 000903 1017 ITEDITD-SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTD 1069 (1232)
Q Consensus 1017 ~~e~~~d-~~~~~~~i~k~~~k~~~vl~ri~~~~~l~~Kv~~~~~~p~~~~~~~ 1069 (1232)
+||+++| ++.|+|||||+++++++||+||++|+||++||++|+++|..+.||.
T Consensus 89 L~E~~~d~s~tfsDGVPkEgl~~q~VL~RIgvm~LIr~KV~e~e~~ng~~s~p~ 142 (145)
T PF06461_consen 89 LCEPGTDNSDTFSDGVPKEGLRRQDVLVRIGVMSLIRKKVQEFEHINGTWSFPE 142 (145)
T ss_pred hcCCCcCCCCccCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCccCch
Confidence 9999988 8999999999999999999999999999999999999998888774
No 28
>PTZ00110 helicase; Provisional
Probab=99.92 E-value=9.2e-23 Score=251.30 Aligned_cols=319 Identities=17% Similarity=0.241 Sum_probs=215.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhhC-----CCC-CeEEEeCC-ccHHHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-----RIS-PHLVVAPL-STLRNWEREFATW 355 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqai-a~l~~l~~~-----~~~-p~LIV~P~-sll~qW~~E~~~~ 355 (1232)
.++.|+|.+++..+ ..+.++|+..++|+|||++.+ .++..+... ..+ .+|||||. .+..|+..++.++
T Consensus 151 ~~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 35889999998665 578899999999999999864 344444332 123 47999996 6668999999988
Q ss_pred cC--CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc--ccCCCceeE
Q 000903 356 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQC 431 (1232)
Q Consensus 356 ~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~--~l~~i~w~~ 431 (1232)
.. .+++.+.+|........... ....+|+|+|++.+..... .+.--...+
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~~l--------------------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIYAL--------------------------RRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHHHH--------------------------HcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 74 35566666654433322221 1246899999988754321 112224678
Q ss_pred EEEcCcccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000903 432 MIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1232)
Q Consensus 432 vIvDEaHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1232)
|||||||++-... ..+...+..+.. ...+++|||.- .++-.+..
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~----------------------------- 327 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLAR----------------------------- 327 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHH-----------------------------
Confidence 9999999987643 233444445543 34688999951 11111100
Q ss_pred HHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC
Q 000903 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
.++ ...| ..+.+..... .. .. .+++ .+
T Consensus 328 -----~l~---------~~~~----v~i~vg~~~l--~~---------------~~----------~i~q----~~---- 354 (545)
T PTZ00110 328 -----DLC---------KEEP----VHVNVGSLDL--TA---------------CH----------NIKQ----EV---- 354 (545)
T ss_pred -----HHh---------ccCC----EEEEECCCcc--cc---------------CC----------CeeE----EE----
Confidence 000 0000 0011100000 00 00 0000 00
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHH
Q 000903 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1232)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~ 668 (1232)
..+....|...|..+|..+...+.++|||++.....+.|...|...|++...++|.++..+|..+++
T Consensus 355 -------------~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~ 421 (545)
T PTZ00110 355 -------------FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLN 421 (545)
T ss_pred -------------EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHH
Confidence 0011233556666777776667889999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 669 ~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
.|.++.. .+||+|.++++|||++.+++||+||+++++..++|++||++|.|.+-. +|-|++.+
T Consensus 422 ~F~~G~~---~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 422 EFKTGKS---PIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred HHhcCCC---cEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 9987544 489999999999999999999999999999999999999999997644 45566665
No 29
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.2e-22 Score=247.04 Aligned_cols=308 Identities=18% Similarity=0.161 Sum_probs=207.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~~vv 362 (1232)
..++|+|.++++-+ ..+.++++..+||.|||+..+.-+. . ..+..|||+|+ +++.++...+... ++.+.
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~l--~--~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPAL--C--SDGITLVISPLISLMEDQVLQLKAS--GIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHHH--H--cCCcEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 4677999999999999987543322 2 23578999995 6778888888765 45566
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc---ccc-CCCceeEEEEcCcc
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASL-KPIKWQCMIVDEGH 438 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~---~~l-~~i~w~~vIvDEaH 438 (1232)
.+.|.........-..- .....++++++|++.+.... ..+ ......+|||||||
T Consensus 80 ~l~~~~~~~~~~~i~~~----------------------~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTD----------------------LKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 66665443321111000 01245789999999986533 222 33467899999999
Q ss_pred cccCccc-------HHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000903 439 RLKNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1232)
Q Consensus 439 rlKn~~S-------~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1232)
++..... .+......+.....++|||||-.....++...+++-.|..+... |
T Consensus 138 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------- 196 (470)
T TIGR00614 138 CISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------- 196 (470)
T ss_pred ccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------
Confidence 9865432 12222233445668999999854433444333332222111000 0
Q ss_pred hhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCC
Q 000903 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1232)
Q Consensus 512 L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~ 591 (1232)
.-|.. .+.+.-..
T Consensus 197 ---------------~r~nl-~~~v~~~~--------------------------------------------------- 209 (470)
T TIGR00614 197 ---------------DRPNL-YYEVRRKT--------------------------------------------------- 209 (470)
T ss_pred ---------------CCCCc-EEEEEeCC---------------------------------------------------
Confidence 00000 00000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 000903 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1232)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn 671 (1232)
+..+..+.+.+.. ...|.++||||......+.|...|...|+.+..++|+++..+|..+++.|.
T Consensus 210 ---------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~ 273 (470)
T TIGR00614 210 ---------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ 273 (470)
T ss_pred ---------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH
Confidence 0011111222221 124678899999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000903 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1232)
Q Consensus 672 ~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1232)
.+.. .+|++|.+.|+|||++.+++||+|+++.++..+.|+.||++|.|+...+.+|
T Consensus 274 ~g~~---~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 274 RDEI---QVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCCC---cEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 6443 4899999999999999999999999999999999999999999988766554
No 30
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=2.7e-22 Score=244.91 Aligned_cols=316 Identities=18% Similarity=0.266 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhhCC--------CCCeEEEeCC-ccHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER--------ISPHLVVAPL-STLRNWEREFA 353 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia-~l~~l~~~~--------~~p~LIV~P~-sll~qW~~E~~ 353 (1232)
..+.|+|.+++..+ ..|.++|++..+|+|||+..+. ++..+.... ....|||+|. .+..|+.+.+.
T Consensus 108 ~~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 35889999998866 6789999999999999988643 444444321 2368999996 66688888888
Q ss_pred HHcC--CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc--ccCCCce
Q 000903 354 TWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKW 429 (1232)
Q Consensus 354 ~~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~--~l~~i~w 429 (1232)
.+.. ++++..++|.......++.. ....++|+|+|++++..... .+.--..
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~~~-------------------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLKQL-------------------------EARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 7763 46777888865433322221 11357899999999864321 1111245
Q ss_pred eEEEEcCcccccCccc--HHHHHHHhcc---cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHH
Q 000903 430 QCMIVDEGHRLKNKDS--KLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~S--~~~~~l~~l~---~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~ 504 (1232)
.+|||||||++.+..- .+...+..+. ....+++|||.- +++.++...
T Consensus 239 ~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~~~~--------------------------- 290 (475)
T PRK01297 239 EVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT-DDVMNLAKQ--------------------------- 290 (475)
T ss_pred ceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC-HHHHHHHHH---------------------------
Confidence 7899999999976432 2334444442 235789999952 111111100
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcc
Q 000903 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1232)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~ 584 (1232)
++ ..+ ..+.+.... .... . +. .|-+
T Consensus 291 ----------~~-----------~~~---~~v~~~~~~-------------------~~~~--~-------~~---~~~~ 315 (475)
T PRK01297 291 ----------WT-----------TDP---AIVEIEPEN-------------------VASD--T-------VE---QHVY 315 (475)
T ss_pred ----------hc-----------cCC---EEEEeccCc-------------------CCCC--c-------cc---EEEE
Confidence 00 000 001000000 0000 0 00 0000
Q ss_pred cccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHH
Q 000903 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1232)
Q Consensus 585 L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq 664 (1232)
. +..+.|..+|..++.. ..+.++|||++....++.|...|...|+.+..++|.++..+|.
T Consensus 316 ~------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~ 375 (475)
T PRK01297 316 A------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRI 375 (475)
T ss_pred E------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 0 0122344445555433 2346999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 665 ~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
.+++.|.++.. .+|++|.++++|||++.+++||+||.++++..++|+.||++|.|+.-. ++-|++.+
T Consensus 376 ~~~~~Fr~G~~---~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 376 KTLEGFREGKI---RVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred HHHHHHhCCCC---cEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 99999976543 489999999999999999999999999999999999999999998654 33455443
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.91 E-value=2.4e-22 Score=243.74 Aligned_cols=309 Identities=16% Similarity=0.231 Sum_probs=204.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhhCC-----C--CCeEEEeCC-ccHHHHHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-----I--SPHLVVAPL-STLRNWEREFATW 355 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l-~~l~~~~-----~--~p~LIV~P~-sll~qW~~E~~~~ 355 (1232)
.+.|+|.+++.-+ ..+.++|+..++|+|||+..+..+ ..+.... . ..+|||||. .+..||..++..+
T Consensus 23 ~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 5889999998766 467899999999999999875544 4433221 1 148999996 6668999999887
Q ss_pred cC--CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeE
Q 000903 356 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (1232)
Q Consensus 356 ~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~ 431 (1232)
.. .+.++.++|.......+... ...++|+|+|++.+.... ..+.--..++
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKL--------------------------RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHH--------------------------cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 63 45666666665433221110 135789999999885432 2222235679
Q ss_pred EEEcCcccccCcc--cHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000903 432 MIVDEGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1232)
Q Consensus 432 vIvDEaHrlKn~~--S~~~~~l~~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1232)
|||||||++-... ..+...+..+... ..+++|||+- +.+.++.. .+..
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~-~~~~~l~~---~~~~------------------------- 203 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS-DDIKALAE---KLLH------------------------- 203 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc-HHHHHHHH---HHcC-------------------------
Confidence 9999999986543 2333444445433 4689999962 11111110 0000
Q ss_pred HHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC
Q 000903 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
.|..+.-..... ..+........+
T Consensus 204 ----~~~~i~~~~~~~--~~~~i~~~~~~~-------------------------------------------------- 227 (456)
T PRK10590 204 ----NPLEIEVARRNT--ASEQVTQHVHFV-------------------------------------------------- 227 (456)
T ss_pred ----CCeEEEEecccc--cccceeEEEEEc--------------------------------------------------
Confidence 000000000000 000000000000
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHH
Q 000903 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1232)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~ 668 (1232)
....|..+|..++.. ....++|||++.....+.|.+.|...|+....++|.++..+|..+++
T Consensus 228 ----------------~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 228 ----------------DKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred ----------------CHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Confidence 011223333333332 23468999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEE
Q 000903 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1232)
Q Consensus 669 ~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1232)
.|.++. ..+||+|.++++|||++.+++||+||++.++..++|++||++|.|.+..+.+
T Consensus 290 ~F~~g~---~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 290 DFKSGD---IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHcCC---CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 997644 3489999999999999999999999999999999999999999998755443
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.91 E-value=2.3e-22 Score=244.65 Aligned_cols=314 Identities=18% Similarity=0.272 Sum_probs=215.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhhCCCC-CeEEEeCC-ccHHHHHHHHHHHc---C
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGERIS-PHLVVAPL-STLRNWEREFATWA---P 357 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~-l~~l~~~~~~-p~LIV~P~-sll~qW~~E~~~~~---p 357 (1232)
.++.|+|.+++..+ ..+.++|+..++|+|||..++.. +..+...... ..||+||. .+..||..++..+. +
T Consensus 25 ~~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 35889999999876 46889999999999999876444 4444323222 58999996 66689999988764 5
Q ss_pred CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc--ccCCCceeEEEEc
Q 000903 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVD 435 (1232)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~--~l~~i~w~~vIvD 435 (1232)
++++..++|.......+... ....+|+|+|++.+..... .+.--.+++||+|
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l--------------------------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSL--------------------------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred CcEEEEEECCCChHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 78888888876544332221 1356899999998865322 2222356899999
Q ss_pred CcccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000903 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1232)
Q Consensus 436 EaHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L 512 (1232)
|||++-... ..+...+..+.. ...+++|||+-. ++-.+ .
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~----~~~~l----------------------------------~ 196 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE----GIAAI----------------------------------S 196 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH----HHHHH----------------------------------H
Confidence 999986543 233444444443 356899999621 11000 0
Q ss_pred hhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCC
Q 000903 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1232)
Q Consensus 513 ~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~ 592 (1232)
..++ .-| .. +.+..... .. . +. .+.+.
T Consensus 197 ~~~~----------~~~--~~--i~~~~~~~--------------------~~--~-------i~---~~~~~------- 223 (460)
T PRK11776 197 QRFQ----------RDP--VE--VKVESTHD--------------------LP--A-------IE---QRFYE------- 223 (460)
T ss_pred HHhc----------CCC--EE--EEECcCCC--------------------CC--C-------ee---EEEEE-------
Confidence 0000 000 00 00000000 00 0 00 00000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q 000903 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1232)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~ 672 (1232)
+....|+..|..++.. ..+.++||||+.....+.|.+.|...|+.+..++|+++..+|+.+++.|.+
T Consensus 224 -----------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~ 290 (460)
T PRK11776 224 -----------VSPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN 290 (460)
T ss_pred -----------eCcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 0112266667777654 245689999999999999999999999999999999999999999999986
Q ss_pred CCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 673 ~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
+.. .+||+|.++++|||++++++||+||.+.++..++|++||++|.|+.- ..|.|++.+
T Consensus 291 g~~---~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 291 RSC---SVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred CCC---cEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 543 48999999999999999999999999999999999999999999764 345566554
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.90 E-value=3.9e-22 Score=244.97 Aligned_cols=315 Identities=15% Similarity=0.193 Sum_probs=207.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhhC--------CCCCeEEEeCC-ccHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE--------RISPHLVVAPL-STLRNWEREFA 353 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~-l~~l~~~--------~~~p~LIV~P~-sll~qW~~E~~ 353 (1232)
..+.|+|.+++..+ ..+.++|+..++|+|||+..+.. +..+... .....|||+|. .+..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 35889999998776 47889999999999999987543 4443321 11268999996 56678888888
Q ss_pred HHcCC--CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCce
Q 000903 354 TWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKW 429 (1232)
Q Consensus 354 ~~~p~--~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w 429 (1232)
.+... +.++.+.|.......+... ...++|+|+|++.+.... ..+.--..
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l--------------------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRI--------------------------QQGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccchhe
Confidence 77643 4455555543322221110 124789999998875421 12222345
Q ss_pred eEEEEcCcccccCcc--cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000903 430 QCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~--S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~ 507 (1232)
.+|||||||++...+ ..+...+..+.....+++|||.- +.+.. +...+..+
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~-~~v~~---l~~~~~~~----------------------- 324 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS-PEVEK---FASSLAKD----------------------- 324 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC-HHHHH---HHHHhCCC-----------------------
Confidence 789999999986543 34445555666677899999962 11111 00000000
Q ss_pred HHHhhhhhhhhhhhhhHhhcCCC--cEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCccc
Q 000903 508 LHRMLAPHLLRRVKKDVMKELPP--KKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1232)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~LP~--k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L 585 (1232)
+..+.... ...|. .....+.+.
T Consensus 325 ------~~~i~~~~----~~~~~~~v~q~~~~~~---------------------------------------------- 348 (518)
T PLN00206 325 ------IILISIGN----PNRPNKAVKQLAIWVE---------------------------------------------- 348 (518)
T ss_pred ------CEEEEeCC----CCCCCcceeEEEEecc----------------------------------------------
Confidence 00000000 00000 011111111
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhh-CCCcEEEEeCCCCHHHHH
Q 000903 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQ 664 (1232)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~eRq 664 (1232)
...|...|..+|........++|||++.....+.|.+.|.. .|+.+..++|+++..+|.
T Consensus 349 --------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~ 408 (518)
T PLN00206 349 --------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERR 408 (518)
T ss_pred --------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHH
Confidence 11122334444443333346899999999999999999974 699999999999999999
Q ss_pred HHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 665 ~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
.+++.|.++.. -+|++|.++++|||++.+++||+||++.++..++|++||++|.|..- .++.|++.+
T Consensus 409 ~il~~Fr~G~~---~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 409 EVMKSFLVGEV---PVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred HHHHHHHCCCC---CEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 99999987544 48999999999999999999999999999999999999999999754 444566543
No 34
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.90 E-value=4.5e-21 Score=231.26 Aligned_cols=405 Identities=19% Similarity=0.240 Sum_probs=237.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCC-CCeEEEeCCc-cHHHHHHHHHHHcCCCcE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPLS-TLRNWEREFATWAPQMNV 361 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~-~p~LIV~P~s-ll~qW~~E~~~~~p~~~v 361 (1232)
..||+||.+-+.-. - +.|.|+|..||+|||..|+.++...++... +.++++||.. ++.|-...|..++-...+
T Consensus 61 ~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred ccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 57999999987543 3 899999999999999999888877766544 6999999975 556667778777633555
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCC---CceeEEEEcCcc
Q 000903 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQCMIVDEGH 438 (1232)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~---i~w~~vIvDEaH 438 (1232)
....|+...+.-.. .-....+|++.|++++..+...... -.|.++||||||
T Consensus 136 T~~l~~~~~~~~r~--------------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRG--------------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred eeeccCccCCCchh--------------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 55555533321110 0123568999999999887544332 248899999999
Q ss_pred cccCcc--cHHHHHHHhccc--ccEEEEecCCCCCCHHHHHHHHhhhcCCC-CCChHHHHHHHhh------------hhh
Q 000903 439 RLKNKD--SKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGK-FGSLEEFQEEFKD------------INQ 501 (1232)
Q Consensus 439 rlKn~~--S~~~~~l~~l~~--~~rllLTGTPlqN~~~EL~~Ll~fL~p~~-~~~~~~F~~~~~~------------~~~ 501 (1232)
|..... +...+.+...+. ...|+|||||- ++.....+.+.=|.... ......-...|.. ...
T Consensus 190 ra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 190 RTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred cccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 986543 344444444432 36789999997 66666655544443321 0011111222211 111
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccC--C-----------HHHHH-HHHHHHHH-HHHHHHhcCCcc
Q 000903 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL--S-----------SKQKE-YYKAILTR-NYQILTRRGGAQ 566 (1232)
Q Consensus 502 ~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~l--s-----------~~Q~~-~Y~~il~~-~~~~l~~~~~~~ 566 (1232)
......|..+++|++.+-... .|.+.....-..+. . ..|+- .|..++.. +...+...+-
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gi-- 342 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEE----GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGI-- 342 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhc----CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcch--
Confidence 233455667777776543322 22211110000000 0 01110 11111111 1111111000
Q ss_pred hhHHHHHHHHHHHhCCc----ccccCCCCC-cccchH---HHHHHH----hhhhHHHHHHHHHHHHHHc--CceEEEEec
Q 000903 567 ISLINVVMELRKLCCHP----YMLEGVEPD-IEDTNE---SFKQLL----ESSGKLQLLDKMMVKLKEQ--GHRVLIYSQ 632 (1232)
Q Consensus 567 ~~l~~il~~Lrk~c~hP----~L~~~~e~~-~~~~~~---~~~~li----~~S~Kl~~L~klL~~l~~~--g~KvLIFsq 632 (1232)
.+.+.+..+.....-- |+....+.. ...... .+..+. ...+|+..|.++|...... ..|+|||+.
T Consensus 343 -r~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve 421 (746)
T KOG0354|consen 343 -RFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVE 421 (746)
T ss_pred -hhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEe
Confidence 0111111111000000 000000000 000000 001111 2467999999988876554 579999999
Q ss_pred chhHHHHHHHHHh-h--CCCcEEEEeC--------CCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEE
Q 000903 633 FQHMLDLLEDYLT-F--KKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1232)
Q Consensus 633 ~~~~ldiL~~~L~-~--~g~~~~ridG--------~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi 701 (1232)
+...++.|..+|. . -|++...+-| +++..+.+++|+.|+++... +||+|..|.+|||++.||.||.
T Consensus 422 ~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIc 498 (746)
T KOG0354|consen 422 TRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVIC 498 (746)
T ss_pred hHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEE
Confidence 9999999999987 2 3555555555 46788899999999885554 8999999999999999999999
Q ss_pred EcCCCChhhHHHHHHhhhhcCCCCceEEEEEee
Q 000903 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1232)
Q Consensus 702 ~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt 734 (1232)
||..-||...+||+|| +|.- .-.++-|.+
T Consensus 499 Yd~~snpIrmIQrrGR-gRa~---ns~~vll~t 527 (746)
T KOG0354|consen 499 YDYSSNPIRMVQRRGR-GRAR---NSKCVLLTT 527 (746)
T ss_pred ecCCccHHHHHHHhcc-cccc---CCeEEEEEc
Confidence 9999999999999999 7744 444444555
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.90 E-value=9.3e-22 Score=237.81 Aligned_cols=312 Identities=16% Similarity=0.190 Sum_probs=207.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhhC-----CCCCeEEEeCC-ccHHHHHHHHHHHc
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE-----RISPHLVVAPL-STLRNWEREFATWA 356 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~-l~~l~~~-----~~~p~LIV~P~-sll~qW~~E~~~~~ 356 (1232)
.++.++|.+++..+ ..+.++|+...+|+|||+.++.. +..+... +...+||++|. .+..|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPA----LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35889999998766 46788999999999999987543 4444321 12368999996 56678888777765
Q ss_pred C--CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeEE
Q 000903 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1232)
Q Consensus 357 p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~v 432 (1232)
. ++.+..++|.......... -...++|+|+|++.+.... ..+..-.+++|
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~--------------------------l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEV--------------------------FSENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHH--------------------------hcCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 3 5778888887543322111 0135689999998876432 22223356789
Q ss_pred EEcCcccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000903 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1232)
Q Consensus 433 IvDEaHrlKn~~--S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1232)
||||||++-... ..+...+..+. ....+++|||+-...+.++.. .
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~------------------~-------------- 199 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE------------------R-------------- 199 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH------------------H--------------
Confidence 999999986543 22222223332 234589999973111111100 0
Q ss_pred HhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCC
Q 000903 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1232)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~ 589 (1232)
++ ..... +.+..+.... ....|-+....
T Consensus 200 -~~----------------~~~~~--i~~~~~~~~~--------------------------------~~i~~~~~~~~- 227 (434)
T PRK11192 200 -LL----------------NDPVE--VEAEPSRRER--------------------------------KKIHQWYYRAD- 227 (434)
T ss_pred -Hc----------------cCCEE--EEecCCcccc--------------------------------cCceEEEEEeC-
Confidence 00 00000 1111000000 00000000000
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHH
Q 000903 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1232)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~ 669 (1232)
....|..+|..++.. ....++|||++....++.|...|...|+.+..++|.++..+|..+++.
T Consensus 228 ---------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 228 ---------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred ---------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 012345555555542 246799999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEE
Q 000903 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1232)
Q Consensus 670 Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1232)
|.++. +.+|++|.++++|||++.+++||+||+++++..++|++||++|.|....+.+
T Consensus 291 f~~G~---~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 291 LTDGR---VNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred HhCCC---CcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 97644 4589999999999999999999999999999999999999999998755544
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=4e-22 Score=240.04 Aligned_cols=313 Identities=16% Similarity=0.213 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhhCC--------CCCeEEEeCC-ccHHHHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l-~~l~~~~--------~~p~LIV~P~-sll~qW~~E~~~ 354 (1232)
.+.|.|.+++.-+ ..+.++|+..++|+|||+..+..+ ..+.... ...+||+||. .+..|+.+++..
T Consensus 30 ~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5789999998765 578899999999999999875443 3343221 1258999996 666889888877
Q ss_pred HcC--CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCcee
Q 000903 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (1232)
Q Consensus 355 ~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~ 430 (1232)
+.. ++++..++|........... ...++|+|+|++.+.... ..+.--.+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL--------------------------ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 763 56777777765433221110 124689999999886432 223333567
Q ss_pred EEEEcCcccccCcc--cHHHHHHHhccc---ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000903 431 CMIVDEGHRLKNKD--SKLFSSLKQYST---RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1232)
Q Consensus 431 ~vIvDEaHrlKn~~--S~~~~~l~~l~~---~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~ 505 (1232)
+|||||||++-... ..+...+..+.. ...+++|||.- ..+.++
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~-~~~~~~------------------------------- 207 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLS-YRVREL------------------------------- 207 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCC-HHHHHH-------------------------------
Confidence 99999999986543 223333344432 23578899962 111110
Q ss_pred HHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCccc
Q 000903 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1232)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L 585 (1232)
...+ +.......+ .-... ... . + .+.++
T Consensus 208 ------~~~~------------~~~p~~i~v--~~~~~-------------------~~~--~-------i----~~~~~ 235 (423)
T PRK04837 208 ------AFEH------------MNNPEYVEV--EPEQK-------------------TGH--R-------I----KEELF 235 (423)
T ss_pred ------HHHH------------CCCCEEEEE--cCCCc-------------------CCC--c-------e----eEEEE
Confidence 0000 000000011 00000 000 0 0 00000
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHH
Q 000903 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1232)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~ 665 (1232)
. .....|+.+|..++.. ....++|||++....++.|...|...|+++..++|.++..+|..
T Consensus 236 ~-----------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 236 Y-----------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred e-----------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 0 0112355566666544 24679999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000903 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1232)
Q Consensus 666 ~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1232)
+++.|.++.. .+|++|.++++|||++.+++||+||+++++..++|++||++|.|+.-.+ +-|++.
T Consensus 297 ~l~~F~~g~~---~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 297 ILEEFTRGDL---DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHcCCC---cEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 9999987544 4899999999999999999999999999999999999999999976443 445544
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.89 E-value=3.2e-21 Score=239.79 Aligned_cols=309 Identities=16% Similarity=0.221 Sum_probs=209.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhhCCC-CCeEEEeCC-ccHHHHHHHHHHHc---C
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERI-SPHLVVAPL-STLRNWEREFATWA---P 357 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqai-a~l~~l~~~~~-~p~LIV~P~-sll~qW~~E~~~~~---p 357 (1232)
.++.|+|.+++..+ ..+.++|+...+|+|||++.+ .++..+..... ..+||+||. .+..||..++..+. +
T Consensus 27 ~~ptpiQ~~ai~~l----l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHL----LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 36899999998776 467889999999999999864 44444433322 368999996 66689999988764 6
Q ss_pred CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeEEEEc
Q 000903 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1232)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~vIvD 435 (1232)
.++++.++|.......++.. ....+|||+|++.+.... ..+.--...+||||
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l--------------------------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL--------------------------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred CceEEEEECCcCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 78888888776443322221 124689999998886432 12222356789999
Q ss_pred CcccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000903 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1232)
Q Consensus 436 EaHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L 512 (1232)
|||.+-+.. ..+...+..+.. ...+++|||.- ..+.++.
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p-~~i~~i~------------------------------------- 198 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP-EAIRRIT------------------------------------- 198 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC-hhHHHHH-------------------------------------
Confidence 999886543 234445555543 34688999951 1111100
Q ss_pred hhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCC
Q 000903 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1232)
Q Consensus 513 ~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~ 592 (1232)
..|+ .......+..... ... ...+-|.
T Consensus 199 ~~~l------------~~~~~i~i~~~~~-----------------------~~~-----------~i~q~~~------- 225 (629)
T PRK11634 199 RRFM------------KEPQEVRIQSSVT-----------------------TRP-----------DISQSYW------- 225 (629)
T ss_pred HHHc------------CCCeEEEccCccc-----------------------cCC-----------ceEEEEE-------
Confidence 0000 0000000000000 000 0000000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q 000903 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1232)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~ 672 (1232)
.+....|...|..+|.. ....++||||+.....+.|...|...|+....++|.++..+|..++++|..
T Consensus 226 ----------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 226 ----------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred ----------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 00112344555555543 234689999999999999999999999999999999999999999999976
Q ss_pred CCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceE
Q 000903 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 673 ~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
+. ..+||+|.+++.|||++.+++||+||++.++..++|++||++|.|..-.+.
T Consensus 294 G~---~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 294 GR---LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred CC---CCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEE
Confidence 44 348999999999999999999999999999999999999999999765443
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=1.3e-21 Score=242.04 Aligned_cols=312 Identities=16% Similarity=0.260 Sum_probs=208.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhhCC--------CCCeEEEeCC-ccHHHHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l-~~l~~~~--------~~p~LIV~P~-sll~qW~~E~~~ 354 (1232)
.+.|.|..++..+ ..+.++|+..++|+|||+.++..+ ..+.... ...+|||||. .+..|+...+.+
T Consensus 31 ~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5889999999876 578999999999999999875544 4443211 1368999996 666899999988
Q ss_pred HcC--CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc---ccCCCce
Q 000903 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKW 429 (1232)
Q Consensus 355 ~~p--~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~---~l~~i~w 429 (1232)
+.. .+.+..++|........... ...++|+|+|++.+..... .+.....
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l--------------------------~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELL--------------------------QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHH--------------------------hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 874 35677777765432211110 1247899999998865422 2223356
Q ss_pred eEEEEcCcccccCcc--cHHHHHHHhcc---cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHH
Q 000903 430 QCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~--S~~~~~l~~l~---~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~ 504 (1232)
++|||||||++-... ..+...+..+. ....+++|||.- +.+.++.
T Consensus 161 ~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~-~~v~~l~----------------------------- 210 (572)
T PRK04537 161 EICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-HRVLELA----------------------------- 210 (572)
T ss_pred eeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc-HHHHHHH-----------------------------
Confidence 789999999985432 22223333343 234688999951 1111110
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEecc-CCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCc
Q 000903 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (1232)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~-ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP 583 (1232)
..++. -|. ...+... .+. ..++ |-
T Consensus 211 --------~~~l~----------~p~--~i~v~~~~~~~-------------------------------~~i~----q~ 235 (572)
T PRK04537 211 --------YEHMN----------EPE--KLVVETETITA-------------------------------ARVR----QR 235 (572)
T ss_pred --------HHHhc----------CCc--EEEeccccccc-------------------------------ccee----EE
Confidence 00000 000 0000000 000 0000 00
Q ss_pred ccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHH
Q 000903 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (1232)
Q Consensus 584 ~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eR 663 (1232)
+.+ .....|+..|..++.. ..+.++|||++....++.|.+.|...|+.+..++|+++..+|
T Consensus 236 ~~~-----------------~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR 296 (572)
T PRK04537 236 IYF-----------------PADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKR 296 (572)
T ss_pred EEe-----------------cCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 000 0012244444445443 347899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000903 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1232)
Q Consensus 664 q~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1232)
..+++.|.+.. ..+||+|.++++|||++.+++||+||.++++..++|++||++|.|....+. -|++.
T Consensus 297 ~~il~~Fr~G~---~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai--~~~~~ 363 (572)
T PRK04537 297 ESLLNRFQKGQ---LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI--SFACE 363 (572)
T ss_pred HHHHHHHHcCC---CeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE--EEecH
Confidence 99999997644 458999999999999999999999999999999999999999999865444 34543
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.88 E-value=2.9e-21 Score=241.16 Aligned_cols=304 Identities=18% Similarity=0.171 Sum_probs=204.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~~vv 362 (1232)
.+++|+|.+++.-+ ..+.++++..+||.|||+..+..+. .. .+.+|||+|+ +++.++...+... +..+.
T Consensus 24 ~~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpal--~~--~g~tlVisPl~sL~~dqv~~l~~~--gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPAL--VL--DGLTLVVSPLISLMKDQVDQLLAN--GVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHH--Hc--CCCEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999766 4688999999999999987643322 22 2579999995 6778888888765 45555
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc--ccccCCCceeEEEEcCcccc
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d--~~~l~~i~w~~vIvDEaHrl 440 (1232)
.+.+..........+.- ......+++++|++.+... ...+.....++|||||||.+
T Consensus 94 ~~~s~~~~~~~~~~~~~----------------------~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 94 CLNSTQTREQQLEVMAG----------------------CRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred EEcCCCCHHHHHHHHHH----------------------HhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 55555432221111100 0123567999999987642 23344456789999999998
Q ss_pred cCccc---HHHHHH----HhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000903 441 KNKDS---KLFSSL----KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1232)
Q Consensus 441 Kn~~S---~~~~~l----~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1232)
..... ..+..+ ..+.....++||||+-.....++...+.+-.|..+... |
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~----------------- 208 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------F----------------- 208 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------C-----------------
Confidence 65432 122223 23334567999999854443344333322211110000 0
Q ss_pred hhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCc
Q 000903 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1232)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~ 593 (1232)
.-|.....++
T Consensus 209 -------------~r~nl~~~v~--------------------------------------------------------- 218 (607)
T PRK11057 209 -------------DRPNIRYTLV--------------------------------------------------------- 218 (607)
T ss_pred -------------CCCcceeeee---------------------------------------------------------
Confidence 0000000000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 000903 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1232)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~ 673 (1232)
....++..|...+.. ..+.++||||+.....+.+...|...|+++..++|+++.++|..+++.|..+
T Consensus 219 -----------~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g 285 (607)
T PRK11057 219 -----------EKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD 285 (607)
T ss_pred -----------eccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC
Confidence 000011112222221 3578999999999999999999999999999999999999999999999765
Q ss_pred CCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceE
Q 000903 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 674 ~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
.. .+|++|.+.|.|||++.+++||+||+|.++..+.|+.||++|.|....+.
T Consensus 286 ~~---~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 286 DL---QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred CC---CEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 43 48999999999999999999999999999999999999999999765544
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=4e-21 Score=240.45 Aligned_cols=304 Identities=20% Similarity=0.222 Sum_probs=209.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~~vv 362 (1232)
.+++|+|.++++-+ ..+.+++++..||.|||+.+...+ +.. .+.+|||+|. +++.++...+... +..+.
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpa--l~~--~g~~lVisPl~sL~~dq~~~l~~~--gi~~~ 81 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPA--LLL--KGLTVVISPLISLMKDQVDQLRAA--GVAAA 81 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHH--HHc--CCcEEEEcCCHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 467899999999999999875333 222 3578999995 6778888888875 46677
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc--ccccCCCceeEEEEcCcccc
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d--~~~l~~i~w~~vIvDEaHrl 440 (1232)
.++++...........- ......+++++|++.+... ...+......+|||||||.+
T Consensus 82 ~~~s~~~~~~~~~~~~~----------------------l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKA----------------------LVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 77766443221111000 0123578999999988542 23455567889999999998
Q ss_pred cCccc-------HHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000903 441 KNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1232)
Q Consensus 441 Kn~~S-------~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1232)
...+. .+......+.....++||||+-.....++...+.+-.+..+.. .+
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~----------------- 196 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF----------------- 196 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC-----------------
Confidence 65332 2223333444556899999985444334333332211111000 00
Q ss_pred hhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCc
Q 000903 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1232)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~ 593 (1232)
.-|.....++.
T Consensus 197 -------------~r~nl~~~v~~-------------------------------------------------------- 207 (591)
T TIGR01389 197 -------------DRPNLRFSVVK-------------------------------------------------------- 207 (591)
T ss_pred -------------CCCCcEEEEEe--------------------------------------------------------
Confidence 00000000000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 000903 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1232)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~ 673 (1232)
...+...+..++... .+.++||||+.....+.|.++|...|+++..++|+++.++|..+++.|..+
T Consensus 208 ------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 208 ------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred ------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 011122233333321 267899999999999999999999999999999999999999999999764
Q ss_pred CCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceE
Q 000903 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 674 ~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
. +.+|++|.+.|.|||++.++.||+||++.|+..+.|++||++|.|+...+.
T Consensus 274 ~---~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 274 D---VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred C---CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 4 458999999999999999999999999999999999999999999765554
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.88 E-value=5.9e-21 Score=228.64 Aligned_cols=317 Identities=18% Similarity=0.263 Sum_probs=206.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC--CCCCeEEEeCC-ccHHHHHHHHHHHcC--C
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~--~~~p~LIV~P~-sll~qW~~E~~~~~p--~ 358 (1232)
..+.|+|..++..+ ..+.+.|+..++|+|||+.++..+...... ....+|||+|. .+..|+.+.+...+. .
T Consensus 49 ~~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 36899999998776 578889999999999999875544444332 22479999996 555777777776653 3
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeEEEEcC
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~vIvDE 436 (1232)
..+....|....+..+... ....+|+|+|++.+.... ..+.--.+++|||||
T Consensus 125 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKL--------------------------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred ceEEEEECCcCHHHHHHHH--------------------------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 4445555654433222111 123579999998875321 122223568999999
Q ss_pred cccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000903 437 GHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1232)
Q Consensus 437 aHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1232)
||++.... ..+...+..+.. ...+++|||+- +...++.. .|. ..
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~------------------~~~--------------~~ 225 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP-NEILELTT------------------KFM--------------RD 225 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC-HHHHHHHH------------------HHc--------------CC
Confidence 99986533 344555555543 35789999962 11111100 000 00
Q ss_pred hhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCc
Q 000903 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1232)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~ 593 (1232)
|..+ ..+.+. ..+.......+.+. .
T Consensus 226 ~~~~-~~~~~~-~~~~~~~~~~~~~~--~--------------------------------------------------- 250 (401)
T PTZ00424 226 PKRI-LVKKDE-LTLEGIRQFYVAVE--K--------------------------------------------------- 250 (401)
T ss_pred CEEE-EeCCCC-cccCCceEEEEecC--h---------------------------------------------------
Confidence 0000 000000 00000000111000 0
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 000903 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1232)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~ 673 (1232)
...++..+..++..+ ...++|||++....++.+...|...++.+..++|.++..+|+.+++.|.++
T Consensus 251 ------------~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 251 ------------EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred ------------HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 001222222232221 346899999999999999999999999999999999999999999999864
Q ss_pred CCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCc
Q 000903 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1232)
Q Consensus 674 ~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1232)
. ..+|++|.++++|||++.+++||+||++.++..++|++||++|.|.. -.++.|++...
T Consensus 317 ~---~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 317 S---TRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred C---CCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 4 34899999999999999999999999999999999999999999864 44566776653
No 42
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=6.9e-21 Score=223.64 Aligned_cols=312 Identities=19% Similarity=0.273 Sum_probs=221.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhh------CCCCC-eEEEeCC-ccHHHHHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG------ERISP-HLVVAPL-STLRNWEREFATW 355 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~------~~~~p-~LIV~P~-sll~qW~~E~~~~ 355 (1232)
.+.|-|..+.-.+ ..|+.+|....+|+|||+.. |-.+.++.. .+.+| +||++|. .+..|-..++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 4666776664333 57899999999999999985 555666654 12345 8999997 5557888999988
Q ss_pred cCCCc--EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeE
Q 000903 356 APQMN--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (1232)
Q Consensus 356 ~p~~~--vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~ 431 (1232)
...+. .++++|.......++.. ....+|+|+|+..+.... ..+.--...+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--------------------------~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--------------------------ERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--------------------------hcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 85544 77777776655555443 135789999999987543 2333345679
Q ss_pred EEEcCcccccC--cccHHHHHHHhc-cccc-EEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000903 432 MIVDEGHRLKN--KDSKLFSSLKQY-STRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1232)
Q Consensus 432 vIvDEaHrlKn--~~S~~~~~l~~l-~~~~-rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~ 507 (1232)
+|+|||.++-. ...+..+.+..+ .+.. .|+-|||-- .
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp----~----------------------------------- 283 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWP----K----------------------------------- 283 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeecc----H-----------------------------------
Confidence 99999999965 456777888888 4443 677788730 0
Q ss_pred HHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCccccc
Q 000903 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1232)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~ 587 (1232)
-+|.+..+.+. -+....+.... .+ . ....+.++-
T Consensus 284 --------~v~~lA~~fl~--~~~~i~ig~~~---~~-~----------------------a~~~i~qiv---------- 317 (519)
T KOG0331|consen 284 --------EVRQLAEDFLN--NPIQINVGNKK---EL-K----------------------ANHNIRQIV---------- 317 (519)
T ss_pred --------HHHHHHHHHhc--CceEEEecchh---hh-h----------------------hhcchhhhh----------
Confidence 01111222221 11112222110 00 0 000011111
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH-HcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHH
Q 000903 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1232)
Q Consensus 588 ~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~-~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~ 666 (1232)
..+....|...|.++|.... ..+.||||||+.....+.|+..|...+|+..-|+|..++.+|..+
T Consensus 318 --------------e~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 318 --------------EVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred --------------hhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHH
Confidence 11234668888888888877 445699999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceE
Q 000903 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 667 i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
++.|..+.. -+|++|+.++.|||++.+++||+||+|-|...|++|+||.+|.|++-...
T Consensus 384 L~~FreG~~---~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 384 LKGFREGKS---PVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred HHhcccCCc---ceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 999966544 59999999999999999999999999999999999999999988775544
No 43
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=6.5e-21 Score=209.95 Aligned_cols=322 Identities=21% Similarity=0.293 Sum_probs=228.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhhCCCC-CeEEEeCCccH-HHHHHHHHHHc--CCC
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWA--PQM 359 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiq-aia~l~~l~~~~~~-p~LIV~P~sll-~qW~~E~~~~~--p~~ 359 (1232)
.+.+-|.+++-.+ ..|+.+|.+.|+|.|||.. +|-++..|+.+... ..||++|.--| .|-...|+... -++
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4566788887555 6789999999999999998 57778888886544 56999997666 45556677765 467
Q ss_pred cEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCC---ceeEEEEcC
Q 000903 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQCMIVDE 436 (1232)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i---~w~~vIvDE 436 (1232)
.+.++.|..+........ .-++||+|.|+..+......-+.+ ...++|+||
T Consensus 159 r~~~lvGG~~m~~q~~~L--------------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL--------------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEEEEecCchHHHHHHHh--------------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 888899988765543321 246899999999987654432222 345799999
Q ss_pred cccccCcc--cHHHHHHHhcccccE-EEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000903 437 GHRLKNKD--SKLFSSLKQYSTRHR-VLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1232)
Q Consensus 437 aHrlKn~~--S~~~~~l~~l~~~~r-llLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1232)
|.|+-|.. -.+...|+.+....+ +|.|||- ..+ +.+|..
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM-t~k----------------------------------v~kL~r--- 254 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATM-TKK----------------------------------VRKLQR--- 254 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeec-chh----------------------------------hHHHHh---
Confidence 99998865 466677777765544 6778883 111 111110
Q ss_pred hhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCc
Q 000903 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1232)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~ 593 (1232)
. .+-. ++.|..+. .|+ ++..|.+ -||+-
T Consensus 255 -a-----------sl~~----p~~v~~s~----ky~----------------------tv~~lkQ----~ylfv------ 282 (476)
T KOG0330|consen 255 -A-----------SLDN----PVKVAVSS----KYQ----------------------TVDHLKQ----TYLFV------ 282 (476)
T ss_pred -h-----------ccCC----CeEEeccc----hhc----------------------chHHhhh----heEec------
Confidence 0 0100 01111110 011 1111221 12221
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 000903 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1232)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~ 673 (1232)
...-|-..|..+|.++ .|..+||||+...+.+.+.-+|+..|+....++|.|+...|-.+++.|++.
T Consensus 283 -----------~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 283 -----------PGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred -----------cccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 1122344556666653 478999999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHH
Q 000903 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1232)
Q Consensus 674 ~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~ 746 (1232)
.-+ +|++|+.++.|+|.+.+|+||+||.|-+...|++|.||+.|.| +.-.+..||+. +|-..+++.
T Consensus 350 ~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330|consen 350 ARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred CCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHHH
Confidence 544 8999999999999999999999999999999999999999999 56677789988 444444443
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.87 E-value=1.7e-20 Score=235.59 Aligned_cols=311 Identities=16% Similarity=0.151 Sum_probs=204.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~~vv 362 (1232)
..+||+|.++++.+ ..+.++|+...+|.|||+....-+.. . .+.+|||+|+ +|+.++...+... .+.+.
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL~--~--~GiTLVISPLiSLmqDQV~~L~~~--GI~Aa 528 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPALI--C--PGITLVISPLVSLIQDQIMNLLQA--NIPAA 528 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHHH--c--CCcEEEEeCHHHHHHHHHHHHHhC--CCeEE
Confidence 47999999999766 57889999999999999886443322 1 3579999996 6666555555442 56666
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc---cccCC----CceeEEEEc
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKP----IKWQCMIVD 435 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~---~~l~~----i~w~~vIvD 435 (1232)
.+.|............-. ......+++|++|++.+.... ..+.. -...+||||
T Consensus 529 ~L~s~~s~~eq~~ilr~l--------------------~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQEL--------------------SSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred EEECCCCHHHHHHHHHHH--------------------HhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 676664432221111000 001246789999999875421 12211 236789999
Q ss_pred CcccccCcccH---HHHH----HHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000903 436 EGHRLKNKDSK---LFSS----LKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1232)
Q Consensus 436 EaHrlKn~~S~---~~~~----l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1232)
|||.+-..... -++. ...+.....++||||.-.....++...|.+..+..|.. .|
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf------------ 650 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SF------------ 650 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------cc------------
Confidence 99998654321 1222 22344556799999975444444444333221111100 00
Q ss_pred HHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC
Q 000903 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
.-|.....++. -. .
T Consensus 651 ------------------~RpNL~y~Vv~--k~---k------------------------------------------- 664 (1195)
T PLN03137 651 ------------------NRPNLWYSVVP--KT---K------------------------------------------- 664 (1195)
T ss_pred ------------------CccceEEEEec--cc---h-------------------------------------------
Confidence 00110011110 00 0
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHH
Q 000903 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1232)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~ 668 (1232)
..+..|.+++... ..+...||||......+.|..+|...|++...++|+++..+|..+++
T Consensus 665 -------------------k~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe 724 (1195)
T PLN03137 665 -------------------KCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQK 724 (1195)
T ss_pred -------------------hHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHH
Confidence 0001111222111 12457899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEE
Q 000903 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1232)
Q Consensus 669 ~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyr 731 (1232)
+|..+.. .+|++|.|.|.|||++.+++||+||.+-++..+.|++||++|.|+.-.+..|+
T Consensus 725 ~F~~Gei---~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 725 QWSKDEI---NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHhcCCC---cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9977543 48999999999999999999999999999999999999999999886665544
No 45
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.6e-21 Score=216.30 Aligned_cols=341 Identities=18% Similarity=0.328 Sum_probs=234.8
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCc-cHHHHHHHHHHHc--CC
Q 000903 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWA--PQ 358 (1232)
Q Consensus 282 ~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~s-ll~qW~~E~~~~~--p~ 358 (1232)
+..++||||...++-|.-+ -..+.||+.-.+|.|||+..+..+..+ .+.+||+|..+ .+.||+..|..|. -+
T Consensus 299 Pst~iRpYQEksL~KMFGN-gRARSGiIVLPCGAGKtLVGvTAa~ti----kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKTLVGVTAACTI----KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccccCchHHHHHHHHhCC-CcccCceEEEecCCCCceeeeeeeeee----cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 3467999999999877221 233468999999999999877766543 23689999864 5689999999998 23
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc----------ccccCCCc
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPIK 428 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d----------~~~l~~i~ 428 (1232)
-.+..|+.+..++ ......|+||||.++..- ..++..-.
T Consensus 374 ~~i~rFTsd~Ke~-------------------------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~E 422 (776)
T KOG1123|consen 374 DQICRFTSDAKER-------------------------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGRE 422 (776)
T ss_pred cceEEeecccccc-------------------------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCe
Confidence 4556666554432 123556999999998432 45678889
Q ss_pred eeEEEEcCcccccCcccHHHH-HHHhcccccEEEEecCCCCCCHHHHHHHHhhhc-CCCCCChHHHHHHHhhhhhHHHHH
Q 000903 429 WQCMIVDEGHRLKNKDSKLFS-SLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLD-AGKFGSLEEFQEEFKDINQEEQIS 506 (1232)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~-~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~-p~~~~~~~~F~~~~~~~~~~~~~~ 506 (1232)
|.++|+||+|-+- +++++ .+..+.+..+|+||||-+... |-..=||||- |..+. . +..
T Consensus 423 WGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------A---------nWm 482 (776)
T KOG1123|consen 423 WGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------A---------NWM 482 (776)
T ss_pred eeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------c---------cHH
Confidence 9999999999763 34444 444556778999999976432 1122234443 33221 1 111
Q ss_pred HHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccc
Q 000903 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1232)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~ 586 (1232)
.|.+ ...+.......|+|+||+. .|+..+..+... ..++
T Consensus 483 dL~~--------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~k--------r~lL---------------- 521 (776)
T KOG1123|consen 483 DLQK--------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRK--------RMLL---------------- 521 (776)
T ss_pred HHHh--------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhh--------hhee----------------
Confidence 1110 0123445567899999985 565554432110 0000
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHH
Q 000903 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1232)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~ 666 (1232)
.+-+..|++.-.-|++....+|.|+||||..+-.| ..|--..|-+| |.|.|++.+|-++
T Consensus 522 ----------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfAL---k~YAikl~Kpf--IYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 522 ----------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFAL---KEYAIKLGKPF--IYGPTSQNERMKI 580 (776)
T ss_pred ----------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHH---HHHHHHcCCce--EECCCchhHHHHH
Confidence 01244577777778888888999999999877654 44544445555 7899999999999
Q ss_pred HHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC-ChhhHHHHHHhhhhcCCC----CceEEEEEeeCCcHHHH
Q 000903 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQT----NKVMIFRLITRGSIEER 741 (1232)
Q Consensus 667 i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW-Np~~~~Qa~gR~hRiGQ~----k~V~Vyrlvt~~TvEE~ 741 (1232)
++.|+..+.-..+|| +++|...|+|+.|+.+|-..+.. +-.+..||+||+.|.-.. -++..|-||+++|.|..
T Consensus 581 LqnFq~n~~vNTIFl--SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 581 LQNFQTNPKVNTIFL--SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred HHhcccCCccceEEE--eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 999987655444344 89999999999999999999875 667899999999996532 25889999999998854
Q ss_pred H
Q 000903 742 M 742 (1232)
Q Consensus 742 i 742 (1232)
-
T Consensus 659 Y 659 (776)
T KOG1123|consen 659 Y 659 (776)
T ss_pred h
Confidence 3
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.86 E-value=8.7e-20 Score=235.70 Aligned_cols=322 Identities=18% Similarity=0.216 Sum_probs=201.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhhCC-------CCCeEEEeCC-ccHHHHHHH---
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER-------ISPHLVVAPL-STLRNWERE--- 351 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia-~l~~l~~~~-------~~p~LIV~P~-sll~qW~~E--- 351 (1232)
..|+|+|.+++.-+ ..+.++|++.+||+|||+.++. ++..+.... ...+|+|+|+ ++..++.+.
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 45999999998765 5788999999999999998744 455554321 1258999996 555666553
Q ss_pred ----HHHHc-------CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc
Q 000903 352 ----FATWA-------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (1232)
Q Consensus 352 ----~~~~~-------p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d 420 (1232)
+..++ |++.+.+.+|+.......+.. ....+|+|||++.+...
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l--------------------------~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML--------------------------KKPPHILITTPESLAIL 160 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH--------------------------hCCCCEEEecHHHHHHH
Confidence 33343 467888888886543221110 12568999999998532
Q ss_pred c------cccCCCceeEEEEcCcccccCcc--cHHHHHHHh---cc--cccEEEEecCCCCCCHHHHHHHHhhhcCCCCC
Q 000903 421 S------ASLKPIKWQCMIVDEGHRLKNKD--SKLFSSLKQ---YS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (1232)
Q Consensus 421 ~------~~l~~i~w~~vIvDEaHrlKn~~--S~~~~~l~~---l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~ 487 (1232)
. ..|. ..++|||||+|.+.+.. ..+...+.. +. ...+++||||. .++.++... +......
T Consensus 161 l~~~~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~~---L~~~~~~ 233 (876)
T PRK13767 161 LNSPKFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAKF---LVGYEDD 233 (876)
T ss_pred hcChhHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHHH---hcCcccc
Confidence 1 1223 34689999999997532 223333322 22 34679999996 334433322 2111000
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcch
Q 000903 488 SLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI 567 (1232)
Q Consensus 488 ~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~ 567 (1232)
. . -++..+ +...........+.++...
T Consensus 234 ~------------~----------~r~~~i------v~~~~~k~~~i~v~~p~~~------------------------- 260 (876)
T PRK13767 234 G------------E----------PRDCEI------VDARFVKPFDIKVISPVDD------------------------- 260 (876)
T ss_pred C------------C----------CCceEE------EccCCCccceEEEeccCcc-------------------------
Confidence 0 0 000000 0000000000001110000
Q ss_pred hHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhh-
Q 000903 568 SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF- 646 (1232)
Q Consensus 568 ~l~~il~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~- 646 (1232)
+..... ......+...|..+...++++||||+.....+.+...|..
T Consensus 261 -----------------l~~~~~----------------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 261 -----------------LIHTPA----------------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -----------------cccccc----------------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 000000 0000112234444455688999999999999999888875
Q ss_pred -----CCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhc
Q 000903 647 -----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1232)
Q Consensus 647 -----~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRi 721 (1232)
.+..+..++|+++.++|..+++.|.++. ..+|++|.++++|||++.+|+||+|+++.++..++|++||++|-
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~---i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE---LKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCC---CeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 2467899999999999999999997644 35899999999999999999999999999999999999999875
Q ss_pred -CCCCceEEEE
Q 000903 722 -GQTNKVMIFR 731 (1232)
Q Consensus 722 -GQ~k~V~Vyr 731 (1232)
|+.....|+-
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4555555554
No 47
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=1.8e-20 Score=243.45 Aligned_cols=356 Identities=17% Similarity=0.221 Sum_probs=207.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcC-CCceEEEcCCCCcHHHHHHHHHHHHhhC-CCCCeEEEeC-CccHHHHHHHHHHHcCCC
Q 000903 283 GGSLHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~-~~~~ILaDemGLGKTiqaia~l~~l~~~-~~~p~LIV~P-~sll~qW~~E~~~~~p~~ 359 (1232)
+..|||||.++++-+...+.. .++++|.+.+|+|||+++++++..++.. ..+++||||| ..++.||..+|..+.+..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 357999999999877666554 4678999999999999999998888765 3469999999 578899999999874321
Q ss_pred c--EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc-------ccCCCcee
Q 000903 360 N--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQ 430 (1232)
Q Consensus 360 ~--vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~-------~l~~i~w~ 430 (1232)
. +....+... +... .......|+|+|++++.+... .+..-.|+
T Consensus 491 ~~~~~~i~~i~~----L~~~------------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fd 542 (1123)
T PRK11448 491 DQTFASIYDIKG----LEDK------------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYD 542 (1123)
T ss_pred ccchhhhhchhh----hhhh------------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCccc
Confidence 1 100111000 0000 011245799999999865321 12234688
Q ss_pred EEEEcCcccccCc-----------------ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHH
Q 000903 431 CMIVDEGHRLKNK-----------------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 493 (1232)
Q Consensus 431 ~vIvDEaHrlKn~-----------------~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~ 493 (1232)
+||||||||.... .++..+.+..+. ..+|+|||||..+. .++|. .| .+
T Consensus 543 lIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t-~~~FG-----~p-v~------- 607 (1123)
T PRK11448 543 CIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT-TEIFG-----EP-VY------- 607 (1123)
T ss_pred EEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch-hHHhC-----Ce-eE-------
Confidence 9999999996321 123333444343 58899999997432 11111 00 00
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEe----ccCC-HHHHHHHHHHHHHHHHHHHhcCCcchh
Q 000903 494 EEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILR----VELS-SKQKEYYKAILTRNYQILTRRGGAQIS 568 (1232)
Q Consensus 494 ~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~----v~ls-~~Q~~~Y~~il~~~~~~l~~~~~~~~~ 568 (1232)
...-.+.+. ..+++ ...||....... +... ..+...|...... +... .
T Consensus 608 ----~Ysl~eAI~------DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~--~--- 660 (1123)
T PRK11448 608 ----TYSYREAVI------DGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLA--T--- 660 (1123)
T ss_pred ----EeeHHHHHh------cCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhh----hhhc--c---
Confidence 000001110 01111 001333322111 0111 1111122211100 0000 0
Q ss_pred HHHHHHHHHHHhCCcccccCCCCCcccchHHH-HHHHhhhhHHH-HHHHHHHHHHH-cCceEEEEecchhHHHHHHHHHh
Q 000903 569 LINVVMELRKLCCHPYMLEGVEPDIEDTNESF-KQLLESSGKLQ-LLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLT 645 (1232)
Q Consensus 569 l~~il~~Lrk~c~hP~L~~~~e~~~~~~~~~~-~~li~~S~Kl~-~L~klL~~l~~-~g~KvLIFsq~~~~ldiL~~~L~ 645 (1232)
.+.........+ +.++.. .... ++..++..+.. .+.|+||||......+.+.+.|.
T Consensus 661 --------------------l~d~~~~~~~~~~~~vi~~-~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~ 719 (1123)
T PRK11448 661 --------------------LEDEVDFEVEDFNRRVITE-SFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLK 719 (1123)
T ss_pred --------------------CcHHHhhhHHHHHHHHhhH-HHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHH
Confidence 000000000000 111111 1111 22233333322 23699999999999888887765
Q ss_pred hC------CC---cEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHH
Q 000903 646 FK------KW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 716 (1232)
Q Consensus 646 ~~------g~---~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~g 716 (1232)
.. ++ .+..++|+++ +++.+|++|.++... .+|+++...++|+|.+.+++||++++.-++..++|++|
T Consensus 720 ~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 720 EAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 42 22 4567999985 578899999764333 58999999999999999999999999999999999999
Q ss_pred hhhhcCC---CCceEEEEEe
Q 000903 717 RAHRLGQ---TNKVMIFRLI 733 (1232)
Q Consensus 717 R~hRiGQ---~k~V~Vyrlv 733 (1232)
|+.|..- +....||.++
T Consensus 796 RgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 796 RATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred hhccCCccCCCceEEEEehH
Confidence 9999865 5667888876
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.85 E-value=2.2e-19 Score=225.27 Aligned_cols=305 Identities=16% Similarity=0.250 Sum_probs=197.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCc-cHHHHHHHHHHHcC--C
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAP--Q 358 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~--~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~s-ll~qW~~E~~~~~p--~ 358 (1232)
.+|.++|..++..+....... .+.+|..++|+|||+.++..+......+ ..+||++|.. +..|+.+++.++++ +
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-YQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 579999999998886654332 4689999999999998865554444432 3899999964 55899999999986 4
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcc
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaH 438 (1232)
+++.+++|+..........+. ......+|+|+|+..+.... .+. ..++|||||+|
T Consensus 313 i~v~lltg~~~~~~r~~~~~~----------------------i~~g~~~IiVgT~~ll~~~~-~~~--~l~lvVIDEaH 367 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLET----------------------IASGQIHLVVGTHALIQEKV-EFK--RLALVIIDEQH 367 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHH----------------------HhCCCCCEEEecHHHHhccc-ccc--ccceEEEechh
Confidence 888889987544321111100 01246789999999876422 222 45799999999
Q ss_pred cccCcccHHHHHHHh-cc---cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000903 439 RLKNKDSKLFSSLKQ-YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~-l~---~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1232)
++.-. ....+.. .. ..+.|+|||||....+. +..+ .+.
T Consensus 368 ~fg~~---qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~----------------~~l--------------- 409 (630)
T TIGR00643 368 RFGVE---QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY----------------GDL--------------- 409 (630)
T ss_pred hccHH---HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc----------------CCc---------------
Confidence 97422 2222322 22 56789999999643211 1000 000
Q ss_pred hhhhhhhhhHhhcCCCcE--EEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCC
Q 000903 515 HLLRRVKKDVMKELPPKK--ELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1232)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~--e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~ 592 (1232)
...+...+|+.. .....+.-..
T Consensus 410 ------~~~~i~~~p~~r~~i~~~~~~~~~-------------------------------------------------- 433 (630)
T TIGR00643 410 ------DTSIIDELPPGRKPITTVLIKHDE-------------------------------------------------- 433 (630)
T ss_pred ------ceeeeccCCCCCCceEEEEeCcch--------------------------------------------------
Confidence 000011222210 0000000000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecch--------hHHHHHHHHHhh--CCCcEEEEeCCCCHHH
Q 000903 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ--------HMLDLLEDYLTF--KKWQYERIDGKVGGAE 662 (1232)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~--------~~ldiL~~~L~~--~g~~~~ridG~~~~~e 662 (1232)
+ ..+...+......|++++|||... ..+..+.+.|.. .++.+..++|.++..+
T Consensus 434 ----------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 434 ----------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ----------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 0 111122222334578888888754 223344445543 4788999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC-ChhhHHHHHHhhhhcCCCCceE
Q 000903 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 663 Rq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW-Np~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
|..+++.|.++.. .+|++|.+.++|||++.+++||+++++. +-..+.|+.||++|-|....+.
T Consensus 497 R~~i~~~F~~g~~---~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 497 KEAVMEEFREGEV---DILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHcCCC---CEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 9999999987544 4899999999999999999999999984 6788999999999998754444
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.85 E-value=1.7e-19 Score=228.59 Aligned_cols=330 Identities=17% Similarity=0.199 Sum_probs=213.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHc-CCCcE
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~-p~~~v 361 (1232)
+|+|+|.+++..+ ..|.++|++..||+|||+.. +.++..+........|||+|+ .+..|-..++..+. .++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 6999999999876 67899999999999999987 445555544433478999996 55577788888876 35788
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--------cccCCCceeEEE
Q 000903 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPIKWQCMI 433 (1232)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--------~~l~~i~w~~vI 433 (1232)
.+|.|+...... .. -....+|+|||++++.... ..|. ..++||
T Consensus 112 ~~~~Gdt~~~~r-~~--------------------------i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vV 162 (742)
T TIGR03817 112 ATYDGDTPTEER-RW--------------------------AREHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVV 162 (742)
T ss_pred EEEeCCCCHHHH-HH--------------------------HhcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEE
Confidence 889887653321 00 0123589999999986321 1122 236899
Q ss_pred EcCcccccCc-ccHHHHHHHhc---c-----cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHH
Q 000903 434 VDEGHRLKNK-DSKLFSSLKQY---S-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1232)
Q Consensus 434 vDEaHrlKn~-~S~~~~~l~~l---~-----~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~ 504 (1232)
|||||.+.+. .+.+...+..+ . ....+++|||. +++.++... +...
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~~---l~g~-------------------- 217 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAASR---LIGA-------------------- 217 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHHH---HcCC--------------------
Confidence 9999998652 33333333333 1 23468999994 233332211 1000
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhcCCCc-EEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCc
Q 000903 505 ISRLHRMLAPHLLRRVKKDVMKELPPK-KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (1232)
Q Consensus 505 ~~~L~~~L~p~~lRR~k~dv~~~LP~k-~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP 583 (1232)
|+.+ ... ..-|.. ....+..+. ... + . ...
T Consensus 218 ---------~~~~--i~~---~~~~~~~~~~~~~~p~-~~~------~--------~--~~~------------------ 248 (742)
T TIGR03817 218 ---------PVVA--VTE---DGSPRGARTVALWEPP-LTE------L--------T--GEN------------------ 248 (742)
T ss_pred ---------CeEE--ECC---CCCCcCceEEEEecCC-ccc------c--------c--ccc------------------
Confidence 0000 000 001111 111111110 000 0 0 000
Q ss_pred ccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhC--------CCcEEEEe
Q 000903 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------KWQYERID 655 (1232)
Q Consensus 584 ~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~--------g~~~~rid 655 (1232)
+. .... .....+..+|..+ ...+.++|||++.....+.|..+|... +.++..++
T Consensus 249 ----~~--~~r~--------~~~~~~~~~l~~l----~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h 310 (742)
T TIGR03817 249 ----GA--PVRR--------SASAEAADLLADL----VAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR 310 (742)
T ss_pred ----cc--cccc--------chHHHHHHHHHHH----HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee
Confidence 00 0000 0011233333333 345889999999999999999887653 56788899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000903 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1232)
Q Consensus 656 G~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1232)
|+++.++|.+++++|.+ +.+.+|++|+++++|||++..|+||+||.|-+...++|++||++|.|+... ++-+++.
T Consensus 311 gg~~~~eR~~ie~~f~~---G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~ 385 (742)
T TIGR03817 311 AGYLPEDRRELERALRD---GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARD 385 (742)
T ss_pred cCCCHHHHHHHHHHHHc---CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCC
Confidence 99999999999999976 444589999999999999999999999999999999999999999997643 4445666
Q ss_pred CcHHHHHHH
Q 000903 736 GSIEERMMQ 744 (1232)
Q Consensus 736 ~TvEE~i~~ 744 (1232)
+..|..++.
T Consensus 386 ~~~d~~~~~ 394 (742)
T TIGR03817 386 DPLDTYLVH 394 (742)
T ss_pred ChHHHHHHh
Confidence 667776554
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.85 E-value=3.6e-19 Score=227.60 Aligned_cols=308 Identities=18% Similarity=0.207 Sum_probs=203.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCc-cHHHHHHHHHHHcCC--
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQ-- 358 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~--~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~s-ll~qW~~E~~~~~p~-- 358 (1232)
.++.|.|..++.-+..-+..+ .+.+++.++|.|||..++..+......+ ..+||+||+. +..|....|.++++.
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 568999999999886655443 5789999999999998765444333333 4799999975 557888999988755
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcc
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaH 438 (1232)
+++.+++|...........+- ......+|||+|+..+.... .+. +..+|||||+|
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~~----------------------l~~g~~dIVIGTp~ll~~~v-~f~--~L~llVIDEah 583 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILKE----------------------LASGKIDILIGTHKLLQKDV-KFK--DLGLLIIDEEQ 583 (926)
T ss_pred cEEEEEeccccHHHHHHHHHH----------------------HHcCCceEEEchHHHhhCCC-Ccc--cCCEEEeeccc
Confidence 455666665432221111000 01235789999997764322 222 44789999999
Q ss_pred cccCcccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 000903 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~l 517 (1232)
++.. .....++.+. ..+.|+|||||+...+ ...+..+ ..+.++
T Consensus 584 rfgv---~~~~~L~~~~~~~~vL~~SATpiprtl---~~~l~g~------------------------------~d~s~I 627 (926)
T TIGR00580 584 RFGV---KQKEKLKELRTSVDVLTLSATPIPRTL---HMSMSGI------------------------------RDLSII 627 (926)
T ss_pred ccch---hHHHHHHhcCCCCCEEEEecCCCHHHH---HHHHhcC------------------------------CCcEEE
Confidence 9732 3344555554 4578999999964221 1111000 000000
Q ss_pred hhhhhhHhhcCCCcEEEEE---eccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000903 518 RRVKKDVMKELPPKKELIL---RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1232)
Q Consensus 518 RR~k~dv~~~LP~k~e~~v---~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~ 594 (1232)
..||.....+ .++.+.
T Consensus 628 ---------~~~p~~R~~V~t~v~~~~~---------------------------------------------------- 646 (926)
T TIGR00580 628 ---------ATPPEDRLPVRTFVMEYDP---------------------------------------------------- 646 (926)
T ss_pred ---------ecCCCCccceEEEEEecCH----------------------------------------------------
Confidence 1111110000 000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhC--CCcEEEEeCCCCHHHHHHHHHHHhc
Q 000903 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1232)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~eRq~~i~~Fn~ 672 (1232)
..+...++..+ ..|.+|+||++.+...+.+.+.|... ++++..++|.++..+|.+++.+|.+
T Consensus 647 ---------------~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 647 ---------------ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred ---------------HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 00001111222 35789999999999999999999874 7899999999999999999999987
Q ss_pred CCCCceEEEeeccccccccccCCCCEEEEEcCC-CChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000903 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1232)
Q Consensus 673 ~~s~~~v~LlsTragg~GINL~~ad~VIi~D~d-WNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1232)
+.. .+||||.+.+.|||++.+++||+++.+ +....+.|+.||++|.|.. -.+|-|+..
T Consensus 711 Gk~---~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 711 GEF---QVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred CCC---CEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 554 489999999999999999999999996 4567889999999998764 455556644
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.85 E-value=4.1e-19 Score=224.31 Aligned_cols=304 Identities=16% Similarity=0.210 Sum_probs=197.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCC--
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-- 358 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~--~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~-- 358 (1232)
.+|.++|..++.-+...+..+ .+.+|..++|+|||+.++..+......+ ..+||++|+ .+..|....|.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-YQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 579999999998886655433 4789999999999998866554443332 379999997 5558899999999865
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcc
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaH 438 (1232)
+++.+++|............- ......+|+|+|+..+... ..+. +.++|||||+|
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~-v~~~--~l~lvVIDE~H 393 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEA----------------------IASGEADIVIGTHALIQDD-VEFH--NLGLVIIDEQH 393 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHH----------------------HhCCCCCEEEchHHHhccc-chhc--ccceEEEechh
Confidence 788888888653221111100 0123678999999887532 1232 45689999999
Q ss_pred cccCcccHHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 000903 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~l-~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~l 517 (1232)
++. ......+... ...+.|+|||||+...+ .+..+ .+ +..
T Consensus 394 rfg---~~qr~~l~~~~~~~~iL~~SATp~prtl----~~~~~----------------g~-------------~~~--- 434 (681)
T PRK10917 394 RFG---VEQRLALREKGENPHVLVMTATPIPRTL----AMTAY----------------GD-------------LDV--- 434 (681)
T ss_pred hhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHH----HHHHc----------------CC-------------Cce---
Confidence 973 2233344433 24678999999953211 00000 00 000
Q ss_pred hhhhhhHhhcCCCcE--EEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000903 518 RRVKKDVMKELPPKK--ELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1232)
Q Consensus 518 RR~k~dv~~~LP~k~--e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~~ 595 (1232)
.+...+|+.. .....+.
T Consensus 435 -----s~i~~~p~~r~~i~~~~~~-------------------------------------------------------- 453 (681)
T PRK10917 435 -----SVIDELPPGRKPITTVVIP-------------------------------------------------------- 453 (681)
T ss_pred -----EEEecCCCCCCCcEEEEeC--------------------------------------------------------
Confidence 0001122110 0000000
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchh--------HHHHHHHHHhhC--CCcEEEEeCCCCHHHHHH
Q 000903 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTFK--KWQYERIDGKVGGAERQI 665 (1232)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~--------~ldiL~~~L~~~--g~~~~ridG~~~~~eRq~ 665 (1232)
..+...+...+....+.|++++|||..+. ....+.+.|... ++++..++|+++..+|+.
T Consensus 454 -----------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 454 -----------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred -----------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 00001112222333367889999987542 233445555443 578999999999999999
Q ss_pred HHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC-ChhhHHHHHHhhhhcCCCCce
Q 000903 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKV 727 (1232)
Q Consensus 666 ~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW-Np~~~~Qa~gR~hRiGQ~k~V 727 (1232)
++++|.++.. .+|++|.+.++|||++.+++||+++++. ....+.|+.||++|-|....+
T Consensus 523 i~~~F~~g~~---~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 523 VMAAFKAGEI---DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred HHHHHHcCCC---CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 9999986543 4899999999999999999999999985 568889999999998865443
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.83 E-value=3.2e-19 Score=232.72 Aligned_cols=303 Identities=18% Similarity=0.204 Sum_probs=199.4
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH-HHHHHHHHHHcCC--
Q 000903 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQ-- 358 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~--~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll-~qW~~E~~~~~p~-- 358 (1232)
..+.+.|.+++.-+..-+.. ..+.+++.+||+|||.+++..+...... ...+||+||+..| .|....|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-HKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 47899999999877554443 3678999999999999876443332222 3489999997555 7888888876644
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcc
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaH 438 (1232)
+++.+++|...........+- ......+|+|+|++.+..+. .--+.++|||||+|
T Consensus 678 v~i~~l~g~~s~~e~~~il~~----------------------l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEah 732 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAE----------------------AAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEH 732 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHH----------------------HHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechh
Confidence 455566665433221111000 01235789999998775322 12356799999999
Q ss_pred cccCcccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 000903 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~l 517 (1232)
++.. .....++.+. ....|++||||++..+.- .+.++ ..+.++
T Consensus 733 rfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l---~~~gl------------------------------~d~~~I 776 (1147)
T PRK10689 733 RFGV---RHKERIKAMRADVDILTLTATPIPRTLNM---AMSGM------------------------------RDLSII 776 (1147)
T ss_pred hcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHH---HHhhC------------------------------CCcEEE
Confidence 9832 2334455554 457899999996433210 00000 000000
Q ss_pred hhhhhhHhhcCCCcEEEE---EeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000903 518 RRVKKDVMKELPPKKELI---LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1232)
Q Consensus 518 RR~k~dv~~~LP~k~e~~---v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~ 594 (1232)
..||..... +......
T Consensus 777 ---------~~~p~~r~~v~~~~~~~~~---------------------------------------------------- 795 (1147)
T PRK10689 777 ---------ATPPARRLAVKTFVREYDS---------------------------------------------------- 795 (1147)
T ss_pred ---------ecCCCCCCCceEEEEecCc----------------------------------------------------
Confidence 011110000 0000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhC--CCcEEEEeCCCCHHHHHHHHHHHhc
Q 000903 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1232)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~eRq~~i~~Fn~ 672 (1232)
......++..+. +|.+|+||++.+..++.+.+.|... ++.+..++|.++..+|.+++.+|.+
T Consensus 796 ---------------~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 796 ---------------LVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred ---------------HHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 000112233332 4678999999999999999999876 7899999999999999999999987
Q ss_pred CCCCceEEEeeccccccccccCCCCEEEEEcCC-CChhhHHHHHHhhhhcCCCCceE
Q 000903 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 673 ~~s~~~v~LlsTragg~GINL~~ad~VIi~D~d-WNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
+.. .+||+|.+.+.|||++.+++||+.+++ ++...+.|+.||++|.|.+-.+.
T Consensus 860 Gk~---~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 860 QRF---NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred cCC---CEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 544 489999999999999999999998886 67788999999999998764333
No 53
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.6e-18 Score=211.84 Aligned_cols=328 Identities=20% Similarity=0.322 Sum_probs=224.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhh--CCCCC-eEEEeCCc-cHHHHHHHHHHHcC-
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--ERISP-HLVVAPLS-TLRNWEREFATWAP- 357 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~--~~~~p-~LIV~P~s-ll~qW~~E~~~~~p- 357 (1232)
..+.|.|..++--+ ..+..+|....+|+|||+.- |.++..+.. ....+ .||++|+- +..|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 36888999998655 56799999999999999875 445555442 22223 99999975 44777888877763
Q ss_pred --CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeEEE
Q 000903 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMI 433 (1232)
Q Consensus 358 --~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~vI 433 (1232)
.+++++++|...-...+... . ...||||.|+..+.... ..+.--...++|
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l-------------------------~-~~~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEAL-------------------------K-RGVDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHH-------------------------h-cCCCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 57788888876655444332 1 14889999999886432 234444567899
Q ss_pred EcCcccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000903 434 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1232)
Q Consensus 434 vDEaHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~ 510 (1232)
+|||.++-+.+ ..+...+..+.. ...++.|||--. . +..|..
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~----------------------------------i~~l~~ 224 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-D----------------------------------IRELAR 224 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-H----------------------------------HHHHHH
Confidence 99999998763 345555555554 556889999511 1 111100
Q ss_pred -hh-hhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC
Q 000903 511 -ML-APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 511 -~L-~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
.+ .|..+...........+......+.|.-
T Consensus 225 ~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~------------------------------------------------ 256 (513)
T COG0513 225 RYLNDPVEIEVSVEKLERTLKKIKQFYLEVES------------------------------------------------ 256 (513)
T ss_pred HHccCCcEEEEccccccccccCceEEEEEeCC------------------------------------------------
Confidence 00 0100000000000001111111111110
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHH
Q 000903 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1232)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~ 668 (1232)
...|+.+|..++.... ..++|||+.....++.|...|...|+++..|+|++++.+|.++++
T Consensus 257 -----------------~~~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~ 317 (513)
T COG0513 257 -----------------EEEKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALE 317 (513)
T ss_pred -----------------HHHHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH
Confidence 0147777777776533 237999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHH
Q 000903 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1232)
Q Consensus 669 ~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~ 748 (1232)
.|+++.. -+||+|+++++||+++..++||+||.+.++..+++|+||.+|.|.+- ..+.|++. .-|...+....+
T Consensus 318 ~F~~g~~---~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 318 KFKDGEL---RVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred HHHcCCC---CEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHH
Confidence 9985444 48999999999999999999999999999999999999999999443 45567766 335556655555
Q ss_pred H
Q 000903 749 K 749 (1232)
Q Consensus 749 K 749 (1232)
.
T Consensus 392 ~ 392 (513)
T COG0513 392 R 392 (513)
T ss_pred H
Confidence 4
No 54
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.79 E-value=1.5e-17 Score=205.96 Aligned_cols=322 Identities=22% Similarity=0.225 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCC-C----C-CeEEEeCCccH-HHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-I----S-PHLVVAPLSTL-RNWEREFATW 355 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~-~----~-p~LIV~P~sll-~qW~~E~~~~ 355 (1232)
.++.|.|..++.-+ ..|.|+++...||+|||..| +.++..|...+ . + .+|.|.|+..| ..-.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 56899999998766 68999999999999999998 55666666652 1 1 57999997555 4466666666
Q ss_pred c--CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc------ccccCCC
Q 000903 356 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPI 427 (1232)
Q Consensus 356 ~--p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d------~~~l~~i 427 (1232)
. -++.+-+-||+......- +.....+||+|||+|++... ...|..+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~--------------------------r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQ--------------------------KMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred HHHcCCccceecCCCChHHhh--------------------------hccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 5 356666777765432211 11235789999999998543 3345555
Q ss_pred ceeEEEEcCcccccCc--ccHHHHHHHhcc---c-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhh
Q 000903 428 KWQCMIVDEGHRLKNK--DSKLFSSLKQYS---T-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1232)
Q Consensus 428 ~w~~vIvDEaHrlKn~--~S~~~~~l~~l~---~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~ 501 (1232)
+ +|||||.|.+.+. .++++-.|..+. . -.|++||||- .++.++ ..||.+...
T Consensus 151 r--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~v---arfL~g~~~--------------- 208 (814)
T COG1201 151 R--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPEEV---AKFLVGFGD--------------- 208 (814)
T ss_pred c--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHHHH---HHHhcCCCC---------------
Confidence 5 5999999999864 466766666553 2 4589999994 233333 233332210
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhC
Q 000903 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1232)
Q Consensus 502 ~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~ 581 (1232)
+. .-|......+-.+.|.++-... ...
T Consensus 209 ------------~~------~Iv~~~~~k~~~i~v~~p~~~~--~~~--------------------------------- 235 (814)
T COG1201 209 ------------PC------EIVDVSAAKKLEIKVISPVEDL--IYD--------------------------------- 235 (814)
T ss_pred ------------ce------EEEEcccCCcceEEEEecCCcc--ccc---------------------------------
Confidence 00 0000011111111111110000 000
Q ss_pred CcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCC-CcEEEEeCCCCH
Q 000903 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK-WQYERIDGKVGG 660 (1232)
Q Consensus 582 hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g-~~~~ridG~~~~ 660 (1232)
..-...+.+.+..+.++...+|||++...+.+.|...|...+ ..+..-+||.+.
T Consensus 236 -------------------------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSr 290 (814)
T COG1201 236 -------------------------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSR 290 (814)
T ss_pred -------------------------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccH
Confidence 000112333444555566789999999999999999998877 899999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhh-hhcCCCCceEEEEEeeCCcHH
Q 000903 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRLITRGSIE 739 (1232)
Q Consensus 661 ~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~-hRiGQ~k~V~Vyrlvt~~TvE 739 (1232)
++|..+-++|.++. ...++||.+..+|||.-..|.||.|.+|-.-...+||+||+ ||+|....-. +++.+ .+
T Consensus 291 e~R~~vE~~lk~G~---lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~---ii~~~-r~ 363 (814)
T COG1201 291 ELRLEVEERLKEGE---LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGI---IIAED-RD 363 (814)
T ss_pred HHHHHHHHHHhcCC---ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEE---EEecC-HH
Confidence 99999999998755 34799999999999999999999999999999999999999 8888654443 44444 44
Q ss_pred HHH
Q 000903 740 ERM 742 (1232)
Q Consensus 740 E~i 742 (1232)
+.+
T Consensus 364 dll 366 (814)
T COG1201 364 DLL 366 (814)
T ss_pred HHH
Confidence 433
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.79 E-value=7.2e-18 Score=215.94 Aligned_cols=317 Identities=20% Similarity=0.180 Sum_probs=199.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHH-HHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcC-CCc
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia-~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p-~~~ 360 (1232)
.+|+|+|.+++.-+ +..+.++|++..+|.|||+.+.. ++..+. ..+++|+|+|. +++.|+.++|.++.+ +++
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 36999999998642 35788999999999999999854 444443 23589999995 777899999988753 678
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc----ccCCCceeEEEEcC
Q 000903 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 436 (1232)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~----~l~~i~w~~vIvDE 436 (1232)
+.+++|+...... .....+|+|+|++.+..... .+. ..++|||||
T Consensus 97 v~~~tGd~~~~~~-----------------------------~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE 145 (737)
T PRK02362 97 VGISTGDYDSRDE-----------------------------WLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDE 145 (737)
T ss_pred EEEEeCCcCcccc-----------------------------ccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEEC
Confidence 8888886432110 11346899999998743221 122 357999999
Q ss_pred cccccCcc--cHHHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000903 437 GHRLKNKD--SKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1232)
Q Consensus 437 aHrlKn~~--S~~~~~l~~l----~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~ 510 (1232)
+|.+.+.. ..+-..+..+ .....++||||. .|..++...+ ....+.+
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl--~n~~~la~wl---~~~~~~~---------------------- 198 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI--GNADELADWL---DAELVDS---------------------- 198 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC--CCHHHHHHHh---CCCcccC----------------------
Confidence 99986532 2222222222 234678999996 3455544322 2111100
Q ss_pred hhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCC
Q 000903 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1232)
Q Consensus 511 ~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e 590 (1232)
..+|. | ....+.... . .+ . ... +..+
T Consensus 199 ~~rpv-------------~-l~~~v~~~~--~----~~----------~---~~~----------------~~~~----- 224 (737)
T PRK02362 199 EWRPI-------------D-LREGVFYGG--A----IH----------F---DDS----------------QREV----- 224 (737)
T ss_pred CCCCC-------------C-CeeeEecCC--e----ec----------c---ccc----------------cccC-----
Confidence 00000 0 000000000 0 00 0 000 0000
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhC-----------------------
Q 000903 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK----------------------- 647 (1232)
Q Consensus 591 ~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~----------------------- 647 (1232)
....+.. ...++......+.++|||++.....+.+...|...
T Consensus 225 --------------~~~~~~~-~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (737)
T PRK02362 225 --------------EVPSKDD-TLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREV 289 (737)
T ss_pred --------------CCccchH-HHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 0000001 11122223346789999999988766665555321
Q ss_pred -------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEE----Ec-----CC
Q 000903 648 -------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-----SD 705 (1232)
Q Consensus 648 -------------g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi----~D-----~d 705 (1232)
...+..++|+++..+|..+.+.|.++ .+.+|++|.+.+.|||+++..+||. || .+
T Consensus 290 ~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G---~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 290 SDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDR---LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred cCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcC---CCeEEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 13577889999999999999999763 4568999999999999999887776 77 57
Q ss_pred CChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000903 706 WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1232)
Q Consensus 706 WNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1232)
.++..+.|++|||+|.|....-.++-++..
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 788999999999999998765555555543
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.79 E-value=1.2e-17 Score=197.19 Aligned_cols=328 Identities=14% Similarity=0.184 Sum_probs=196.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhC-CCCCeEEEeC-CccHHHHHHHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 384 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~-~~~p~LIV~P-~sll~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~ 384 (1232)
+++..++|.|||.+++.++...... ..+++++|+| .+++.|+.+.+..++.. ++..++|...... .... .+.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~----~~~ 75 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM----GDS 75 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc----CCc
Confidence 5789999999999988877665543 3458999999 47778999999988744 5666666543211 0000 000
Q ss_pred chhhhccccCccccccccccccccEEEecHHHHhhcccc-c-------CCCceeEEEEcCcccccCccc-HHHHHHHhcc
Q 000903 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-L-------KPIKWQCMIVDEGHRLKNKDS-KLFSSLKQYS 455 (1232)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~-l-------~~i~w~~vIvDEaHrlKn~~S-~~~~~l~~l~ 455 (1232)
. ...... .............+++++|++.+...... + ..+...+||+||+|.+..... .+...+..+.
T Consensus 76 ~-~~~~~~--~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 76 E-EFEHLF--PLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred h-hHHHHH--HHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0 000000 00000001123567999999987643222 1 122336899999999875422 2333333332
Q ss_pred --cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEE
Q 000903 456 --TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKE 533 (1232)
Q Consensus 456 --~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e 533 (1232)
....+++|||+- ..+..+ +..+.. ...
T Consensus 153 ~~~~~~i~~SATlp----~~l~~~----------------------------------~~~~~~-----~~~-------- 181 (358)
T TIGR01587 153 DNDVPILLMSATLP----KFLKEY----------------------------------AEKIGY-----VEF-------- 181 (358)
T ss_pred HcCCCEEEEecCch----HHHHHH----------------------------------HhcCCC-----ccc--------
Confidence 235699999961 000000 000000 000
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHH
Q 000903 534 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 613 (1232)
Q Consensus 534 ~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L 613 (1232)
.......+. +....|++..... ....|...+
T Consensus 182 -~~~~~~~~~---------------------------------~~~~~~~~~~~~~---------------~~~~~~~~l 212 (358)
T TIGR01587 182 -NEPLDLKEE---------------------------------RRFERHRFIKIES---------------DKVGEISSL 212 (358)
T ss_pred -ccCCCCccc---------------------------------cccccccceeecc---------------ccccCHHHH
Confidence 000000000 0000111111000 011234445
Q ss_pred HHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCC--cEEEEeCCCCHHHHHHH----HHHHhcCCCCceEEEeecccc
Q 000903 614 DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIR----IDRFNAKNSSRFCFLLSTRAG 687 (1232)
Q Consensus 614 ~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~--~~~ridG~~~~~eRq~~----i~~Fn~~~s~~~v~LlsTrag 687 (1232)
.+++..+ ..+.++|||++.....+.+...|...+. .+..++|.++..+|.+. ++.|.++ ...+|++|.+.
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~---~~~ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN---EKFVIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC---CCeEEEECcch
Confidence 5555433 3578999999999999999999987776 48999999999999764 7888653 33589999999
Q ss_pred ccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCC----ceEEEEEeeCC---cHHHHHHHHHHHHH
Q 000903 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN----KVMIFRLITRG---SIEERMMQMTKKKM 750 (1232)
Q Consensus 688 g~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k----~V~Vyrlvt~~---TvEE~i~~~~~~K~ 750 (1232)
+.|||+. +++||.++.+ +..++|++||++|.|... .|.||.....+ .++..++++...++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999995 8999998775 889999999999999763 45555554444 56667777666554
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.77 E-value=4e-17 Score=208.58 Aligned_cols=317 Identities=19% Similarity=0.200 Sum_probs=194.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcC-CCc
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p-~~~ 360 (1232)
.+|+|+|.+++.-. +..+.++|++..+|.|||+.+ ++++..+... .+.+|+|+|. +++.++.++|..|.. +.+
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-GGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 36999999998631 257899999999999999998 4555554433 3589999995 667888888887752 567
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc----ccCCCceeEEEEcC
Q 000903 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 436 (1232)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~----~l~~i~w~~vIvDE 436 (1232)
+..++|....... .....+|+|+|++.+..... .+. ..++|||||
T Consensus 98 v~~~~Gd~~~~~~-----------------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE 146 (720)
T PRK00254 98 VAMTTGDYDSTDE-----------------------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADE 146 (720)
T ss_pred EEEEeCCCCCchh-----------------------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcC
Confidence 7788886432110 01356899999998754221 222 457899999
Q ss_pred cccccC--cccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh
Q 000903 437 GHRLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1232)
Q Consensus 437 aHrlKn--~~S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~ 513 (1232)
+|.+.. ....+...+..+. ....++||||. .|..++...+ ....+.. ..+
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl--~n~~~la~wl---~~~~~~~----------------------~~r 199 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLGRAQILGLSATV--GNAEELAEWL---NAELVVS----------------------DWR 199 (720)
T ss_pred cCccCCccchHHHHHHHHhcCcCCcEEEEEccC--CCHHHHHHHh---CCccccC----------------------CCC
Confidence 999864 3344444555553 34678999997 2345544322 2111100 000
Q ss_pred hhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCc
Q 000903 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1232)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~ 593 (1232)
| .|-... ++.-... .+. .+..
T Consensus 200 p-------------v~l~~~-~~~~~~~-----~~~-------------~~~~--------------------------- 220 (720)
T PRK00254 200 P-------------VKLRKG-VFYQGFL-----FWE-------------DGKI--------------------------- 220 (720)
T ss_pred C-------------Ccceee-EecCCee-----ecc-------------Ccch---------------------------
Confidence 0 110000 0000000 000 0000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhh---------------------------
Q 000903 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--------------------------- 646 (1232)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~--------------------------- 646 (1232)
... ...+..++..+...+.++|||++.......+...|..
T Consensus 221 -------~~~------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 221 -------ERF------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred -------hcc------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 000 0001112223334577888888876654433322210
Q ss_pred ------CCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEE-------EcCCC-ChhhHH
Q 000903 647 ------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDSDW-NPHADL 712 (1232)
Q Consensus 647 ------~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi-------~D~dW-Np~~~~ 712 (1232)
....+..++|+++.++|..+.+.|.++ ...+|++|.+.+.|+|+++.++||. ++.+. ....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G---~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREG---LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC---CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 123578899999999999999999764 4458999999999999998888774 22222 345789
Q ss_pred HHHHhhhhcCCCCceEEEEEeeCCc
Q 000903 713 QAMARAHRLGQTNKVMIFRLITRGS 737 (1232)
Q Consensus 713 Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1232)
|++|||+|.|..+.-.++-+++...
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998776666666665543
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.77 E-value=2.4e-17 Score=209.70 Aligned_cols=305 Identities=19% Similarity=0.208 Sum_probs=190.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcC-CCcE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p-~~~v 361 (1232)
.+|+|+|.++++-+ ..+.++|++.+||.|||+++...+......+ +.+++|+|. ++..++.+++.++.. +..+
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~~-~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-LKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-CcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 46999999999865 6788999999999999998865554443332 478999995 677888888887652 4666
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc----ccccCCCceeEEEEcCc
Q 000903 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIVDEG 437 (1232)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d----~~~l~~i~w~~vIvDEa 437 (1232)
...+|....... .....+|+|+|++.+... ...+. .+++|||||+
T Consensus 96 ~~~~G~~~~~~~-----------------------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEa 144 (674)
T PRK01172 96 KISIGDYDDPPD-----------------------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEI 144 (674)
T ss_pred EEEeCCCCCChh-----------------------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecc
Confidence 667765432100 012468999999876432 11222 4579999999
Q ss_pred ccccCcc--cHHHHHHH---hcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000903 438 HRLKNKD--SKLFSSLK---QYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1232)
Q Consensus 438 HrlKn~~--S~~~~~l~---~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1232)
|.+.... ..+-..+. .+. ....++||||+ .|..++.. ++....+..
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl--~n~~~la~---wl~~~~~~~----------------------- 196 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYVNPDARILALSATV--SNANELAQ---WLNASLIKS----------------------- 196 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCcc--CCHHHHHH---HhCCCccCC-----------------------
Confidence 9986432 22222222 222 23568999996 23444332 222111100
Q ss_pred hhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCC
Q 000903 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1232)
Q Consensus 512 L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~ 591 (1232)
. ....| ....++... ..| .+....
T Consensus 197 -----------~-~r~vp-l~~~i~~~~------~~~-------------------------------------~~~~~~ 220 (674)
T PRK01172 197 -----------N-FRPVP-LKLGILYRK------RLI-------------------------------------LDGYER 220 (674)
T ss_pred -----------C-CCCCC-eEEEEEecC------eee-------------------------------------eccccc
Confidence 0 00011 111111100 000 000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhC------------------------
Q 000903 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------ 647 (1232)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~------------------------ 647 (1232)
.+ ..+..++......|.++|||++.....+.+...|...
T Consensus 221 ----------------~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 283 (674)
T PRK01172 221 ----------------SQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEM 283 (674)
T ss_pred ----------------cc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHH
Confidence 00 0022334444456789999999888776666666432
Q ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcC---------CCChhhHHHHHHh
Q 000903 648 -KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS---------DWNPHADLQAMAR 717 (1232)
Q Consensus 648 -g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~---------dWNp~~~~Qa~gR 717 (1232)
...+..++|+++.++|..+.+.|.++ ...+|++|.+++.|||+++ .+||++|. ++++..+.|++||
T Consensus 284 l~~gv~~~hagl~~~eR~~ve~~f~~g---~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GR 359 (674)
T PRK01172 284 LPHGVAFHHAGLSNEQRRFIEEMFRNR---YIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGR 359 (674)
T ss_pred HhcCEEEecCCCCHHHHHHHHHHHHcC---CCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhc
Confidence 12356789999999999999999764 3458999999999999996 67888764 3577889999999
Q ss_pred hhhcCCCCceEE
Q 000903 718 AHRLGQTNKVMI 729 (1232)
Q Consensus 718 ~hRiGQ~k~V~V 729 (1232)
|+|.|.......
T Consensus 360 AGR~g~d~~g~~ 371 (674)
T PRK01172 360 AGRPGYDQYGIG 371 (674)
T ss_pred CCCCCCCCcceE
Confidence 999997655333
No 59
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=7.4e-17 Score=199.05 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=101.0
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|...+.+.+..+...|..|||||..+...+.|...|...|+++..++|.+...+|..+...|+. + .++++|+
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g--~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---G--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---C--eEEEEcc
Confidence 4679999999999888899999999999999999999999999999999999988777666554432 3 4799999
Q ss_pred ccccccccC---------CCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceE
Q 000903 686 AGGLGINLA---------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 686 agg~GINL~---------~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
.+|.|+|++ ..++||.|+++-+.. +.|+.||++|.|..-.+.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri-d~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSRV-DLQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcHH-HHHhhhcccCCCCceeEE
Confidence 999999999 789999999997654 599999999998765543
No 60
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=1.8e-17 Score=187.87 Aligned_cols=357 Identities=18% Similarity=0.238 Sum_probs=213.7
Q ss_pred CCcHHHHHHHHHHHHhhc-----CCCceEEEcCCCCcHHHHH-HHHHHHHhhCCCC--CeEEEeCCc-cHHHHHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWS-----KQTHVILADEMGLGKTIQS-IAFLASLFGERIS--PHLVVAPLS-TLRNWEREFATW 355 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~-----~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~~--p~LIV~P~s-ll~qW~~E~~~~ 355 (1232)
.+.|-|...+-|+..-.. ..+...++..+|.|||+.. |-++..|...... +.|||+|.. +..|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 588999999999855443 3556789999999999985 5555555444333 889999965 557899999999
Q ss_pred cCC--CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCC---cee
Q 000903 356 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQ 430 (1232)
Q Consensus 356 ~p~--~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i---~w~ 430 (1232)
++. +-|....|...-+...++.. ......+.||+|+|+..+......-+.| +-.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~---------------------~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lr 297 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLA---------------------SDPPECRIDILVATPGRLVDHLNNTKSFDLKHLR 297 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHh---------------------cCCCccccceEEcCchHHHHhccCCCCcchhhce
Confidence 965 45555566655444333321 0011236799999999998765544443 456
Q ss_pred EEEEcCcccccCcc--cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000903 431 CMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1232)
Q Consensus 431 ~vIvDEaHrlKn~~--S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1232)
++|||||.|+-+.. ..+...+..++...++.+. ..++.+..-..|..++ .+
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~-------------------e~ 350 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLS-------------------EL 350 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcCh--------hhhhhhcccCCchhhH-------------------HH
Confidence 89999999987643 3333333333332222211 1111111100111000 00
Q ss_pred HHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC
Q 000903 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
...+ .+.. .+.++-.+.+.+.+....+. .|+ .+||-++-.
T Consensus 351 ~t~~------------~~~~------------~~l~kL~~satLsqdP~Kl~--------------~l~--l~~Prl~~v 390 (620)
T KOG0350|consen 351 LTKL------------GKLY------------PPLWKLVFSATLSQDPSKLK--------------DLT--LHIPRLFHV 390 (620)
T ss_pred Hhhc------------CCcC------------chhHhhhcchhhhcChHHHh--------------hhh--cCCCceEEe
Confidence 0000 0000 01111111111111111111 111 234433322
Q ss_pred CCCCc--ccchHHH-HHHHhhh--hHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHh----hCCCcEEEEeCCCC
Q 000903 589 VEPDI--EDTNESF-KQLLESS--GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVG 659 (1232)
Q Consensus 589 ~e~~~--~~~~~~~-~~li~~S--~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~----~~g~~~~ridG~~~ 659 (1232)
..+.. ......+ ...+-.. -|...+..++.. ....++|+|++.......|...|. .-..++-.++|+.+
T Consensus 391 ~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 391 SKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 11100 0000011 1111122 244455556655 357899999999988877777775 34566667999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 660 ~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
...|.+.+.+|+.++.. +|++++++++||++...+.||.||+|-.-..|++|.||..|.||.- ++|.++...
T Consensus 469 ~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~ 540 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH 540 (620)
T ss_pred HHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc
Confidence 99999999999876554 8999999999999999999999999999999999999999999964 445566543
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.75 E-value=1.3e-16 Score=198.86 Aligned_cols=107 Identities=23% Similarity=0.411 Sum_probs=88.8
Q ss_pred HHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHH-----HHHHHHhc----CC----CCceEEEeecccc
Q 000903 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ-----IRIDRFNA----KN----SSRFCFLLSTRAG 687 (1232)
Q Consensus 621 ~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq-----~~i~~Fn~----~~----s~~~v~LlsTrag 687 (1232)
...+.++|||++.+...+.|.+.|...++ ..++|.+++.+|. .++++|.. .. .....+||+|.++
T Consensus 269 ~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 269 KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 34578999999999999999999998887 8999999999999 78999975 21 1123589999999
Q ss_pred ccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCc--eEEEEE
Q 000903 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK--VMIFRL 732 (1232)
Q Consensus 688 g~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~--V~Vyrl 732 (1232)
+.|||+.. ++||+++.+ +..++||+||++|.|.... +.|+.+
T Consensus 347 erGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999985 999998776 5799999999999998643 444433
No 62
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.75 E-value=2.7e-16 Score=197.95 Aligned_cols=362 Identities=15% Similarity=0.121 Sum_probs=200.8
Q ss_pred CCCcHHHHHHHHHHHHhhcC------CCceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeC-CccHHHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATW 355 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~------~~~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P-~sll~qW~~E~~~~ 355 (1232)
.-.|+||..+|+-+...... .++|+|.+.+|+|||++++.++..+.... ..++||||| ..+..||..+|..+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 34789999999988776654 46799999999999999999988877543 347999999 57779999999998
Q ss_pred cCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc-ccccCCC----cee
Q 000903 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPI----KWQ 430 (1232)
Q Consensus 356 ~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d-~~~l~~i----~w~ 430 (1232)
.++... -.++ ...+... .......|+|||.+++... ...+..+ ...
T Consensus 317 ~~~~~~--~~~s---~~~L~~~------------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~ 367 (667)
T TIGR00348 317 QKDCAE--RIES---IAELKRL------------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV 367 (667)
T ss_pred CCCCCc--ccCC---HHHHHHH------------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE
Confidence 753111 0111 1111110 0012356999999999752 1112221 123
Q ss_pred EEEEcCcccccCcccHHHHHHH-hcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000903 431 CMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1232)
Q Consensus 431 ~vIvDEaHrlKn~~S~~~~~l~-~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1232)
+||+|||||.-. ......++ .+....+++|||||+...-.+-+ ..|...|+.
T Consensus 368 lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~--------------~~f~~~fg~----------- 420 (667)
T TIGR00348 368 VVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRDTS--------------LTFAYVFGR----------- 420 (667)
T ss_pred EEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCccccccccc--------------ccccCCCCC-----------
Confidence 899999998642 23444453 56678999999999753211101 111100000
Q ss_pred HhhhhhhhhhhhhhHhhcCCCcEEEEEecc--CCHHHHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHHhCCccc
Q 000903 510 RMLAPHLLRRVKKDVMKELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPYM 585 (1232)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~--ls~~Q~~~Y~~il~~~~~~l~~~~~~--~~~l~~il~~Lrk~c~hP~L 585 (1232)
.+..|-+....+| ..+.|.....+.+. ++... .+..+............. ...+......+...
T Consensus 421 -~i~~Y~~~~AI~d--G~~~~i~Y~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 488 (667)
T TIGR00348 421 -YLHRYFITDAIRD--GLTVKIDYEDRLPEDHLDRKK---LDAFFDEIFELLPERIREITKESLKEKLQKTKKI------ 488 (667)
T ss_pred -eEEEeeHHHHhhc--CCeeeEEEEecchhhccChHH---HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhh------
Confidence 0001111000000 01222222222221 22111 111111111100000000 00111111111111
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHH-HH----HHHcCceEEEEecchhHHHHHHHHHhhC-----CCcEEEEe
Q 000903 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMM-VK----LKEQGHRVLIYSQFQHMLDLLEDYLTFK-----KWQYERID 655 (1232)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL-~~----l~~~g~KvLIFsq~~~~ldiL~~~L~~~-----g~~~~rid 655 (1232)
+.+...+..+.+.+ .. ....+.|.+|||.....+..+.+.|... +...+.++
T Consensus 489 ------------------~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s 550 (667)
T TIGR00348 489 ------------------LFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMT 550 (667)
T ss_pred ------------------hcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEec
Confidence 11111111111111 11 1223579999999988887777776432 34556677
Q ss_pred CCCCHH---------------------HHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHH
Q 000903 656 GKVGGA---------------------ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQA 714 (1232)
Q Consensus 656 G~~~~~---------------------eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa 714 (1232)
|+.+.. ....++++|..+ +.+-+|+++....+|+|.+.++++++.-|--+ +..+|+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~--~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQa 627 (667)
T TIGR00348 551 GKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE--ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQA 627 (667)
T ss_pred CCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC--CCceEEEEEcccccccCCCccceEEEeccccc-cHHHHH
Confidence 765432 234789999764 33457888899999999999999999888665 568999
Q ss_pred HHhhhhc-C-CCCceEEEEEee
Q 000903 715 MARAHRL-G-QTNKVMIFRLIT 734 (1232)
Q Consensus 715 ~gR~hRi-G-Q~k~V~Vyrlvt 734 (1232)
+||+.|+ + .+....|+.++.
T Consensus 628 i~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 628 IARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHhccccCCCCCCEEEEECcC
Confidence 9999996 4 344567877764
No 63
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=5.5e-17 Score=171.95 Aligned_cols=315 Identities=18% Similarity=0.261 Sum_probs=217.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhhCCC-CCeEEEeCCccH-HHHHHHHHHHcCC--Cc
Q 000903 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI-SPHLVVAPLSTL-RNWEREFATWAPQ--MN 360 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiq-aia~l~~l~~~~~-~p~LIV~P~sll-~qW~~E~~~~~p~--~~ 360 (1232)
...-|..++--+ .+|+++|.....|+|||.+ +|+++..+.-... .-.||+.|..-| .|-..-+...... +.
T Consensus 50 PS~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 50 PSAIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred chHHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 334566676544 6889999999999999987 4666665533222 378999997555 5555556555544 44
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc--ccccCCCceeEEEEcCcc
Q 000903 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d--~~~l~~i~w~~vIvDEaH 438 (1232)
+....|.+.--+.|+..+ ...+|+.-|+..+... ...|..-...++|+|||.
T Consensus 126 ~hacigg~n~gedikkld--------------------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLD--------------------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred EEEEecCCccchhhhhhc--------------------------ccceEeeCCCchHHHHHHhccccccceeEEEeccHH
Confidence 455556555444343321 3567888888877543 445666677899999999
Q ss_pred cccCc--ccHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 000903 439 RLKNK--DSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPH 515 (1232)
Q Consensus 439 rlKn~--~S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~ 515 (1232)
.+.|. ..+++...+.+. ....+++|||- +.|+..+.++..++.
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdp------------------------------ 225 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDP------------------------------ 225 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCc------------------------------
Confidence 98664 567888888887 55678999994 233333333322222
Q ss_pred hhhhhhhhHhhcCCCcEEEEEeccCCHHH-HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000903 516 LLRRVKKDVMKELPPKKELILRVELSSKQ-KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1232)
Q Consensus 516 ~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q-~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~ 594 (1232)
....+-+-+++-+- +++|-++-.
T Consensus 226 ---------------vrilvkrdeltlEgIKqf~v~ve~----------------------------------------- 249 (400)
T KOG0328|consen 226 ---------------VRILVKRDELTLEGIKQFFVAVEK----------------------------------------- 249 (400)
T ss_pred ---------------eeEEEecCCCchhhhhhheeeech-----------------------------------------
Confidence 11111122222221 111111000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 000903 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1232)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~ 674 (1232)
..=|+..|..|...|- -...+|||+.....|+|.+.++...+.+..++|.++.++|.+++.+|.+..
T Consensus 250 -----------EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~ 316 (400)
T KOG0328|consen 250 -----------EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK 316 (400)
T ss_pred -----------hhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC
Confidence 0013444444444432 247999999999999999999999999999999999999999999999877
Q ss_pred CCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcH
Q 000903 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1232)
Q Consensus 675 s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~Tv 738 (1232)
+. +|++|+.-+.||+++.++.||+||.|-|+..+++|+||.+|.|.+- .+..||....+
T Consensus 317 Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 317 SR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred ce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 75 8999999999999999999999999999999999999999999754 34467766533
No 64
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=3.2e-16 Score=176.90 Aligned_cols=312 Identities=18% Similarity=0.294 Sum_probs=215.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-h-CC---CC--CeEEEeCCccHH----HHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-G-ER---IS--PHLVVAPLSTLR----NWEREF 352 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~-~-~~---~~--p~LIV~P~sll~----qW~~E~ 352 (1232)
.++-|-|..++-.+ .++..+++-..+|+|||+..+.-+.... . .. ++ -.|||+|+--|. +-...|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 46889999998776 7889999999999999998766555544 2 21 12 459999975553 344556
Q ss_pred HHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc----ccccCCCc
Q 000903 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIK 428 (1232)
Q Consensus 353 ~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d----~~~l~~i~ 428 (1232)
....|++++.++.|...-.+.+..+. ....+|+|.|+..+... ...+.--.
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk-------------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK-------------------------EEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH-------------------------HhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 66678999999999977665554431 23567999999877543 22344335
Q ss_pred eeEEEEcCcccccCcc--cHHHHHHHhcccccEE-EEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000903 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRV-LLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1232)
Q Consensus 429 w~~vIvDEaHrlKn~~--S~~~~~l~~l~~~~rl-lLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~ 505 (1232)
-.++|+|||.|+-..+ ..+...|..+..++|- |.|||-- ..+
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~-----------------------------------~~v 202 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQT-----------------------------------QEV 202 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhh-----------------------------------HHH
Confidence 6799999999997654 4556667777666665 4577731 011
Q ss_pred HHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccC---CHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCC
Q 000903 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL---SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCH 582 (1232)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~l---s~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~h 582 (1232)
..|. ..-||. .....|...- +|. ++.+
T Consensus 203 ~dL~----raGLRN-----------pv~V~V~~k~~~~tPS------------------------~L~~----------- 232 (567)
T KOG0345|consen 203 EDLA----RAGLRN-----------PVRVSVKEKSKSATPS------------------------SLAL----------- 232 (567)
T ss_pred HHHH----HhhccC-----------ceeeeecccccccCch------------------------hhcc-----------
Confidence 1111 011110 0111111000 110 0000
Q ss_pred cccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhh--CCCcEEEEeCCCCH
Q 000903 583 PYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGG 660 (1232)
Q Consensus 583 P~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~--~g~~~~ridG~~~~ 660 (1232)
- ...+.+.-|+..|..+|.. ...+|+|||...-...++....|.. .+.+++-++|.++.
T Consensus 233 ~-----------------Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 233 E-----------------YLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred e-----------------eeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 0 1112344577777777766 3467999998888888877776643 57889999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEE
Q 000903 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1232)
Q Consensus 661 ~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyr 731 (1232)
..|..++..|....++ +|++|++++.|||++..|.||.||||-+|..+.+|.||..|.|..-...||-
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 9999999999874444 7999999999999999999999999999999999999999999876655543
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1e-15 Score=190.90 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=109.5
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeec
Q 000903 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1232)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsT 684 (1232)
....|...|..++......|.++||||......+.|...|...|+++..++|.+...++..+...+.. + .++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEc
Confidence 44678999999998887889999999999999999999999999999999999888777766666542 2 379999
Q ss_pred ccccccccc---CCCC-----EEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHH
Q 000903 685 RAGGLGINL---ATAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1232)
Q Consensus 685 ragg~GINL---~~ad-----~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~ 745 (1232)
..+|.|+|+ +.+. +||.+|.+-|+..+.|+.||++|.|..-... .|+ |.|+.++.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~i---s~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFI---SLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEE---cchHHHHHh
Confidence 999999999 4677 9999999999999999999999999875443 233 335666543
No 66
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.72 E-value=8.6e-16 Score=190.67 Aligned_cols=322 Identities=16% Similarity=0.199 Sum_probs=195.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH----------HHHh--h-C-CCCCeEEEeCC-ccHHH
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL----------ASLF--G-E-RISPHLVVAPL-STLRN 347 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l----------~~l~--~-~-~~~p~LIV~P~-sll~q 347 (1232)
...|++.|.+.-.-+...+..++.+|+..++|+|||.|.-.++ ..+. . . ..++++|++|. .+..|
T Consensus 158 ~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~q 237 (675)
T PHA02653 158 KIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRL 237 (675)
T ss_pred cccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHH
Confidence 3678888888888888888999999999999999998842222 1111 1 1 23489999996 44467
Q ss_pred HHHHHHHHc-----CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc
Q 000903 348 WEREFATWA-----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA 422 (1232)
Q Consensus 348 W~~E~~~~~-----p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~ 422 (1232)
...++.... +...+.+..|...... ... .....+++|.|..... .
T Consensus 238 i~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~--~~t-------------------------~~k~~~Ilv~T~~L~l---~ 287 (675)
T PHA02653 238 HSITLLKSLGFDEIDGSPISLKYGSIPDEL--INT-------------------------NPKPYGLVFSTHKLTL---N 287 (675)
T ss_pred HHHHHHHHhCccccCCceEEEEECCcchHH--hhc-------------------------ccCCCCEEEEeCcccc---c
Confidence 777776532 3455666666654210 000 0113478888754311 1
Q ss_pred ccCCCceeEEEEcCcccccCcccHHHHHHHhccc--ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh
Q 000903 423 SLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1232)
Q Consensus 423 ~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~~--~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~ 500 (1232)
.|. ...+|||||||+.-.....+...++.+.. ...+++|||.- .....+ ..|+..
T Consensus 288 ~L~--~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~-~dv~~l---~~~~~~----------------- 344 (675)
T PHA02653 288 KLF--DYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE-DDRDRI---KEFFPN----------------- 344 (675)
T ss_pred ccc--cCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc-HhHHHH---HHHhcC-----------------
Confidence 232 46789999999986555444444444322 25799999962 112221 111110
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHh
Q 000903 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 580 (1232)
Q Consensus 501 ~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c 580 (1232)
|..+. .. ...+.|.....+.....+.+...|-.
T Consensus 345 -------------p~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~------------------------------ 377 (675)
T PHA02653 345 -------------PAFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYIE------------------------------ 377 (675)
T ss_pred -------------CcEEE-eC---CCcCCCeEEEEeecCcccccchhhhH------------------------------
Confidence 00110 00 00112222222222211111111100
Q ss_pred CCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHH-HHcCceEEEEecchhHHHHHHHHHhhC--CCcEEEEeCC
Q 000903 581 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGK 657 (1232)
Q Consensus 581 ~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l-~~~g~KvLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~ 657 (1232)
..|..++ ..+... ...+..+|||+......+.+.+.|... ++.+..++|+
T Consensus 378 --------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~ 430 (675)
T PHA02653 378 --------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGK 430 (675)
T ss_pred --------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCC
Confidence 0011111 111111 124568999999999999999999876 7999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEc----CC--------CChhhHHHHHHhhhhcCCCC
Q 000903 658 VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SD--------WNPHADLQAMARAHRLGQTN 725 (1232)
Q Consensus 658 ~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D----~d--------WNp~~~~Qa~gR~hRiGQ~k 725 (1232)
++.. ++++++|.. +++..+|++|..++.||+++.+++||.++ |. .+.....||.||++|. +
T Consensus 431 Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~ 503 (675)
T PHA02653 431 VPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---S 503 (675)
T ss_pred cCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---C
Confidence 9864 567778742 23456899999999999999999999987 21 2666788888888887 4
Q ss_pred ceEEEEEeeCCcH
Q 000903 726 KVMIFRLITRGSI 738 (1232)
Q Consensus 726 ~V~Vyrlvt~~Tv 738 (1232)
+-.+|+|+++...
T Consensus 504 ~G~c~rLyt~~~~ 516 (675)
T PHA02653 504 PGTYVYFYDLDLL 516 (675)
T ss_pred CCeEEEEECHHHh
Confidence 6888999988764
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=7.1e-16 Score=188.45 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=106.0
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeec
Q 000903 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1232)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsT 684 (1232)
....|...|.+++..+...|..||||++.+...+.|...|...|+++..|+|... +|+..+..|..... .++|+|
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g---~VlVAT 528 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRG---RITVAT 528 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCC---cEEEEc
Confidence 3466899999999888878899999999999999999999999999999999864 55566666643332 389999
Q ss_pred cccccccccC---CCC-----EEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHH
Q 000903 685 RAGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1232)
Q Consensus 685 ragg~GINL~---~ad-----~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~ 745 (1232)
..+|.|+|+. .+. +||.||.+-|+..+.|++||++|.|..-.+. .|+ |.|+.++.+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~ 592 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQS 592 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHh
Confidence 9999999998 443 9999999999999999999999999764433 333 335555544
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.71 E-value=1.8e-16 Score=194.34 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|+..+.+.+..+.+.|..|||||..+...+.|..+|...|+++..++|. ..+|+..|..|.... ..++|+|.
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~---g~VtIATn 461 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRK---GAVTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCC---ceEEEEec
Confidence 3568888888888888999999999999999999999999999999999998 678999999985433 35899999
Q ss_pred ccccccccCC-------CCEEEEEcCCCChhhHHHHHHhhhhcCCCCceE
Q 000903 686 AGGLGINLAT-------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 686 agg~GINL~~-------ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
.+|.|+|+.. .-+||.++.+-|+..+.|+.||++|.|..-...
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 9999999988 669999999999999999999999999875544
No 69
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.71 E-value=9.9e-16 Score=201.11 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=84.1
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCC---------------------------------CcEEEEeCCCCHHHHHHHHHH
Q 000903 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------------WQYERIDGKVGGAERQIRIDR 669 (1232)
Q Consensus 623 ~g~KvLIFsq~~~~ldiL~~~L~~~g---------------------------------~~~~ridG~~~~~eRq~~i~~ 669 (1232)
.+.++|||++.....+.|...|+... +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 47899999999999999888886431 114567899999999999999
Q ss_pred HhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhc
Q 000903 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1232)
Q Consensus 670 Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRi 721 (1232)
|.++. ..+|++|.+++.|||+..+|.||+|++|.+...++|++||++|.
T Consensus 323 fK~G~---LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGE---LRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCC---ceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 97644 45899999999999999999999999999999999999999885
No 70
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.4e-15 Score=182.50 Aligned_cols=305 Identities=20% Similarity=0.214 Sum_probs=211.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~~vv 362 (1232)
..+||-|.++++.+ ..+.++|.-..||-||++..- |-.+.. .|.+|||.|+ |++..-.+.+..-. +.+.
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCyQ--iPAll~--~G~TLVVSPLiSLM~DQV~~l~~~G--i~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCYQ--IPALLL--EGLTLVVSPLISLMKDQVDQLEAAG--IRAA 85 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHhh--hHHHhc--CCCEEEECchHHHHHHHHHHHHHcC--ceee
Confidence 45888999998877 677999999999999998642 222222 4699999995 88888888887753 5555
Q ss_pred EEEcC--hhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc--ccccCCCceeEEEEcCcc
Q 000903 363 MYVGT--SQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 363 ~~~g~--~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d--~~~l~~i~w~~vIvDEaH 438 (1232)
.+.++ .+.+..+... ......+++..++|.+... ...|...+..+++|||||
T Consensus 86 ~lnS~l~~~e~~~v~~~------------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 86 YLNSTLSREERQQVLNQ------------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred hhhcccCHHHHHHHHHH------------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 55444 2333322221 0124578999999999765 445677888999999999
Q ss_pred cccCcc-------cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000903 439 RLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1232)
Q Consensus 439 rlKn~~-------S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1232)
-+...+ ..+......+...-++.||||--.--..++...|+.-.+..|-
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~------------------------ 197 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFR------------------------ 197 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEE------------------------
Confidence 886543 3455555555656789999986333333333333322221110
Q ss_pred hhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCC
Q 000903 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1232)
Q Consensus 512 L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~ 591 (1232)
..+. +. |+..+.+..
T Consensus 198 ------------------------~sfd--------------------------Rp---Ni~~~v~~~------------ 212 (590)
T COG0514 198 ------------------------GSFD--------------------------RP---NLALKVVEK------------ 212 (590)
T ss_pred ------------------------ecCC--------------------------Cc---hhhhhhhhc------------
Confidence 0000 00 000000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 000903 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1232)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn 671 (1232)
.+.-.++.+|.+ .....+...||||......+.|...|...|++...++|+++.++|+..-++|+
T Consensus 213 ------------~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~ 277 (590)
T COG0514 213 ------------GEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFL 277 (590)
T ss_pred ------------ccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHh
Confidence 000011112222 12233556899999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEE
Q 000903 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1232)
Q Consensus 672 ~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1232)
.++.. ++++|.|.|.|||=++...||+||.|-+...|.|-+|||+|-|....+.+
T Consensus 278 ~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 278 NDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred cCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE
Confidence 76554 89999999999999999999999999999999999999999998766654
No 71
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.69 E-value=4.6e-16 Score=177.03 Aligned_cols=307 Identities=19% Similarity=0.286 Sum_probs=202.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hhCC----CC-CeEEEeCCccH-HHHH---HHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGER----IS-PHLVVAPLSTL-RNWE---REFAT 354 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l-~~~~----~~-p~LIV~P~sll-~qW~---~E~~~ 354 (1232)
+|-+-|...+.=+ ..+..++.+.-+|+|||+..+.-+..+ +... .+ .+|||||.--+ .|-. +++.+
T Consensus 104 ~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 5778887776544 577899999999999998764433333 2221 12 67999997555 4544 44555
Q ss_pred HcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCC---ceeE
Q 000903 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQC 431 (1232)
Q Consensus 355 ~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i---~w~~ 431 (1232)
+.|...+.+..|...-+...... . ...+++|.|+..+......-..+ .-++
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl-------------------------~-k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKL-------------------------V-KGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHh-------------------------h-ccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 66677777666665443322211 1 26789999999986543322221 2268
Q ss_pred EEEcCcccccCcc--cHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000903 432 MIVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1232)
Q Consensus 432 vIvDEaHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1232)
+|+|||.|+-..+ --+-+.+..+.. ...+|.|||-
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~------------------------------------------ 271 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQ------------------------------------------ 271 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCC------------------------------------------
Confidence 9999999985433 223333333332 2346666662
Q ss_pred HHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC
Q 000903 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
++.-+++.+-++.+ . |-.++.
T Consensus 272 --------------------------------~~kV~~l~~~~L~~--------------------------d-~~~v~~ 292 (543)
T KOG0342|consen 272 --------------------------------PSKVKDLARGALKR--------------------------D-PVFVNV 292 (543)
T ss_pred --------------------------------cHHHHHHHHHhhcC--------------------------C-ceEeec
Confidence 11111111111000 0 000011
Q ss_pred CCCCcccchHHHHH---HHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHH
Q 000903 589 VEPDIEDTNESFKQ---LLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1232)
Q Consensus 589 ~e~~~~~~~~~~~~---li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~ 665 (1232)
.......+.+.+.+ +.....++.+|..+|++.... .||+||+....+...+.+.|+...+++.-|+|..++..|..
T Consensus 293 ~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 293 DDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTS 371 (543)
T ss_pred CCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccch
Confidence 11111111111111 111233466777788776543 89999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCc
Q 000903 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK 726 (1232)
Q Consensus 666 ~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~ 726 (1232)
+..+|....++ +|++|++++.|+|.+.+|.||-||+|-+|.+|++|+||..|-|-+-.
T Consensus 372 ~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 372 TFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred HHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 99999988887 89999999999999999999999999999999999999999776533
No 72
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=1.4e-15 Score=176.34 Aligned_cols=309 Identities=19% Similarity=0.271 Sum_probs=205.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCCC-----------CCeEEEeCC-ccHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI-----------SPHLVVAPL-STLRNWER 350 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~-----------~p~LIV~P~-sll~qW~~ 350 (1232)
..+.|+|..++.-+ ..|++.+.+..+|.|||..- |-++.+++..+. ...||++|+ .+..|-..
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 35778998887655 78899999999999999876 445666665421 247999996 56688889
Q ss_pred HHHHHc--CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc----cc
Q 000903 351 EFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SL 424 (1232)
Q Consensus 351 E~~~~~--p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~----~l 424 (1232)
|..++. ..++.++.+|....+...+. ....+|++++|...+..-.. .|
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~--------------------------~~~gcdIlvaTpGrL~d~~e~g~i~l 224 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRF--------------------------IKRGCDILVATPGRLKDLIERGKISL 224 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhh--------------------------hccCccEEEecCchhhhhhhcceeeh
Confidence 988887 34666666666544443332 12478999999998864321 23
Q ss_pred CCCceeEEEEcCcccccCc---ccHHHHHHHhcc-----cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHH
Q 000903 425 KPIKWQCMIVDEGHRLKNK---DSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEF 496 (1232)
Q Consensus 425 ~~i~w~~vIvDEaHrlKn~---~S~~~~~l~~l~-----~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~ 496 (1232)
..+ .++|+|||.++-.. .-.+.+.+.... ...-++.|||-- -
T Consensus 225 ~~~--k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp-~--------------------------- 274 (482)
T KOG0335|consen 225 DNC--KFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP-K--------------------------- 274 (482)
T ss_pred hhC--cEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCC-h---------------------------
Confidence 333 48999999998552 223333333321 233466666620 0
Q ss_pred hhhhhHHHHHHHHHhhhhhhhh-hh---hhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHH
Q 000903 497 KDINQEEQISRLHRMLAPHLLR-RV---KKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1232)
Q Consensus 497 ~~~~~~~~~~~L~~~L~p~~lR-R~---k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~i 572 (1232)
.+++ +...|+.- .+ -.-+...-......+++|.
T Consensus 275 -------~iq~---l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~--------------------------------- 311 (482)
T KOG0335|consen 275 -------EIQR---LAADFLKDNYIFLAVGRVGSTSENITQKILFVN--------------------------------- 311 (482)
T ss_pred -------hhhh---hHHHHhhccceEEEEeeeccccccceeEeeeec---------------------------------
Confidence 0111 00011100 00 0000001111112222222
Q ss_pred HHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH---H----cCceEEEEecchhHHHHHHHHHh
Q 000903 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---E----QGHRVLIYSQFQHMLDLLEDYLT 645 (1232)
Q Consensus 573 l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~---~----~g~KvLIFsq~~~~ldiL~~~L~ 645 (1232)
.+.|...|.++|.... . .-++++||+...++++.|..+|.
T Consensus 312 ---------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 312 ---------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred ---------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 1222223333332221 0 12589999999999999999999
Q ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCC
Q 000903 646 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1232)
Q Consensus 646 ~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k 725 (1232)
..|+++.-|+|..++.+|.++++.|...... +||+|..++.|||++.+.+||+||.|-+-..|++|+||.+|.|+.-
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G 435 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGG 435 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCc
Confidence 9999999999999999999999999775554 8999999999999999999999999999999999999999999986
Q ss_pred ceEEEE
Q 000903 726 KVMIFR 731 (1232)
Q Consensus 726 ~V~Vyr 731 (1232)
..+.|.
T Consensus 436 ~atsf~ 441 (482)
T KOG0335|consen 436 RATSFF 441 (482)
T ss_pred eeEEEe
Confidence 666543
No 73
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=5.5e-15 Score=167.84 Aligned_cols=323 Identities=16% Similarity=0.267 Sum_probs=211.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCCC----CCeEEEeCCccH----HHHHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI----SPHLVVAPLSTL----RNWEREFATW 355 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~----~p~LIV~P~sll----~qW~~E~~~~ 355 (1232)
...|-|...+--. .-|+..+-+..+|+|||... +-+|..|+.... .++||+||.--| .+-.+.+.+|
T Consensus 203 ~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3455666654311 23666777889999999764 555666654432 389999997544 4566778888
Q ss_pred cCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCC---ceeEE
Q 000903 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQCM 432 (1232)
Q Consensus 356 ~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i---~w~~v 432 (1232)
+ ++.+....|.-+-+..-.. -...+||||.|+..+......-.++ ...++
T Consensus 279 t-~I~~~L~vGGL~lk~QE~~--------------------------LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQEAV--------------------------LRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred c-cceeeeeecCccHHHHHHH--------------------------HhhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 8 6888888888776543221 1246899999999997654333333 45689
Q ss_pred EEcCcccccCccc-HHHHHHHhccccc--EEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000903 433 IVDEGHRLKNKDS-KLFSSLKQYSTRH--RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1232)
Q Consensus 433 IvDEaHrlKn~~S-~~~~~l~~l~~~~--rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1232)
|+|||.|+....- -....+..+.+.+ -+|.|||- ...+.+|.+|
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~sl-------------------------------- 378 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL-------------------------------- 378 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHHh--------------------------------
Confidence 9999999865432 1223333444443 48888883 1122222211
Q ss_pred HhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCC
Q 000903 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1232)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~ 589 (1232)
+|. ...-|+|..+.. ....|..-+.++|
T Consensus 379 -----------------SL~--kPvrifvd~~~~---------------------~a~~LtQEFiRIR------------ 406 (691)
T KOG0338|consen 379 -----------------SLN--KPVRIFVDPNKD---------------------TAPKLTQEFIRIR------------ 406 (691)
T ss_pred -----------------hcC--CCeEEEeCCccc---------------------cchhhhHHHheec------------
Confidence 111 111122221110 0000000000111
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHH
Q 000903 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1232)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~ 669 (1232)
+.. ..-+-.+|..++.++. ..+++||.+.......|.-.|...|+++.-++|+.++.+|-..+..
T Consensus 407 -~~r------------e~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~k 471 (691)
T KOG0338|consen 407 -PKR------------EGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEK 471 (691)
T ss_pred -ccc------------ccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHH
Confidence 000 0112233444555544 5689999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCC-CceEEEEEeeCCcHHHHHHHHH
Q 000903 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT-NKVMIFRLITRGSIEERMMQMT 746 (1232)
Q Consensus 670 Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~-k~V~Vyrlvt~~TvEE~i~~~~ 746 (1232)
|....-+ |||+|+.++.||++..+-+||+|+.|-+...|++|.||..|.|.. +.|. |+.++ |.+|+.-+
T Consensus 472 Fk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVt---lvgE~--dRkllK~i 541 (691)
T KOG0338|consen 472 FKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVT---LVGES--DRKLLKEI 541 (691)
T ss_pred HHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEE---Eeccc--cHHHHHHH
Confidence 9875554 899999999999999999999999999999999999999999965 4454 77777 66665433
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.67 E-value=1.4e-14 Score=170.17 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=71.7
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCC--CcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEE
Q 000903 623 QGHRVLIYSQFQHMLDLLEDYLTFKK--WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1232)
Q Consensus 623 ~g~KvLIFsq~~~~ldiL~~~L~~~g--~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VI 700 (1232)
.+.|+|||++....++.+...|...| +.+..++|.++..+|.++. ...+|++|.+++.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999999887653 2348999999999999986 4666
Q ss_pred EEcCCCChhhHHHHHHhhh
Q 000903 701 IYDSDWNPHADLQAMARAH 719 (1232)
Q Consensus 701 i~D~dWNp~~~~Qa~gR~h 719 (1232)
++ +-++..++||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 568899999999974
No 75
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.66 E-value=3.6e-15 Score=170.13 Aligned_cols=339 Identities=17% Similarity=0.246 Sum_probs=210.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH----HHHHHHHh------hCCCC-CeEEEeCCccH-HHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS----IAFLASLF------GERIS-PHLVVAPLSTL-RNWEREF 352 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa----ia~l~~l~------~~~~~-p~LIV~P~sll-~qW~~E~ 352 (1232)
...|-|..++--+ ..+++.|...|+|.|||..- +..|..+- +...| ..+|++|+--| .|-..|-
T Consensus 267 eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 3567888876543 67889999999999999542 22222221 11224 46899997655 5667777
Q ss_pred HHHc--CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc--ccCCCc
Q 000903 353 ATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIK 428 (1232)
Q Consensus 353 ~~~~--p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~--~l~~i~ 428 (1232)
.+|+ -.++++...|...--.. .| .-...++++|.|+..+..... .|-.-.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq----~f----------------------qls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQ----GF----------------------QLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred HHhcccccceEEEEecccchhhh----hh----------------------hhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 7776 23677777766432111 01 012467899999988764322 222234
Q ss_pred eeEEEEcCcccccCcc--cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHH
Q 000903 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (1232)
Q Consensus 429 w~~vIvDEaHrlKn~~--S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~ 506 (1232)
..+||+|||.++-... -.....|..+ |..|- .| +.+++ +...
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~m-----------Pssn~-----------k~----~tde~----------~~~~ 440 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQM-----------PSSNA-----------KP----DTDEK----------EGEE 440 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhC-----------Ccccc-----------CC----Cccch----------hhHH
Confidence 5689999999875432 1222222222 11110 00 01111 1111
Q ss_pred HHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccc
Q 000903 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1232)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~ 586 (1232)
.+.+.+.. .| --.......+.|+|.-..+-+..+ ..|...
T Consensus 441 ~~~~~~~~-----~k-------~yrqT~mftatm~p~verlar~yl----------------------------r~pv~v 480 (673)
T KOG0333|consen 441 RVRKNFSS-----SK-------KYRQTVMFTATMPPAVERLARSYL----------------------------RRPVVV 480 (673)
T ss_pred HHHhhccc-----cc-------ceeEEEEEecCCChHHHHHHHHHh----------------------------hCCeEE
Confidence 11111100 00 001233455667665433332222 222221
Q ss_pred c-CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHH
Q 000903 587 E-GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1232)
Q Consensus 587 ~-~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~ 665 (1232)
. +........-+..-.++..+.|...|.++|... -...+|||.+.....|.|.+.|...||++++++|+.+.++|..
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 1 111010000000011244566777777777664 3579999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 666 ~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
++..|.++..+ +|++|.++|.||+++.+++||.||..-+-..|+++|||.+|.|+.-.+. -|+|..
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~~ 624 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTPA 624 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEeccc
Confidence 99999887766 8999999999999999999999999999999999999999999876554 455553
No 76
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.65 E-value=5.4e-16 Score=170.26 Aligned_cols=320 Identities=18% Similarity=0.301 Sum_probs=210.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhh--------CCCCCe-EEEeCCccH-HHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--------ERISPH-LVVAPLSTL-RNWEREFA 353 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~--------~~~~p~-LIV~P~sll-~qW~~E~~ 353 (1232)
...|.|++|+--+ -.|+..|=..=+|+|||+.. +-++...++ .+.||+ |||||..-+ .|-..-+.
T Consensus 192 ~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 4667898887544 56777776677999999863 222222221 234565 999997544 44333333
Q ss_pred HHc--------CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cc
Q 000903 354 TWA--------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--AS 423 (1232)
Q Consensus 354 ~~~--------p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~ 423 (1232)
.++ |.++.....|.-.-+..+... ....|++|.|+..+.... ..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v--------------------------~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVV--------------------------RRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHH--------------------------hcCeeEEEcCcchHHHHHHHhh
Confidence 332 667777777776665544321 135789999998775421 11
Q ss_pred cCCCceeEEEEcCcccccCcc--cHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh
Q 000903 424 LKPIKWQCMIVDEGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1232)
Q Consensus 424 l~~i~w~~vIvDEaHrlKn~~--S~~~~~l~~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~ 500 (1232)
+.---..++.+|||.|+-... .-....+.-|+.. ..||.|||- |.. ...|..
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM----------------P~K-------IQ~FAk-- 376 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM----------------PKK-------IQNFAK-- 376 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc----------------cHH-------HHHHHH--
Confidence 111234689999999986543 2333334444443 457888883 100 000000
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHh
Q 000903 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 580 (1232)
Q Consensus 501 ~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c 580 (1232)
..+++| .+|.|. .....-++++.+
T Consensus 377 --------SALVKP-------------------vtvNVG------------------------RAGAAsldViQe----- 400 (610)
T KOG0341|consen 377 --------SALVKP-------------------VTVNVG------------------------RAGAASLDVIQE----- 400 (610)
T ss_pred --------hhcccc-------------------eEEecc------------------------cccccchhHHHH-----
Confidence 011111 122221 111112222222
Q ss_pred CCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCH
Q 000903 581 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660 (1232)
Q Consensus 581 ~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~ 660 (1232)
-..+..-+|+..|.+.|++ ..-+||||+.-..-+|-|.+||-.+|...+.|+|.-.+
T Consensus 401 --------------------vEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 401 --------------------VEYVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQ 457 (610)
T ss_pred --------------------HHHHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcch
Confidence 1234455677777666655 56699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHH
Q 000903 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1232)
Q Consensus 661 ~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE 740 (1232)
++|..+|+.|..+..+ +|++|++++-|++++...+||+||.+-.-.+|.+|+||.+|-|.+--.+ .||-+++-|.
T Consensus 458 edR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~es 532 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEES 532 (610)
T ss_pred hHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHH
Confidence 9999999999987666 8999999999999999999999999999999999999999999775443 4666766544
Q ss_pred HHH
Q 000903 741 RMM 743 (1232)
Q Consensus 741 ~i~ 743 (1232)
-++
T Consensus 533 vLl 535 (610)
T KOG0341|consen 533 VLL 535 (610)
T ss_pred HHH
Confidence 443
No 77
>COG4889 Predicted helicase [General function prediction only]
Probab=99.65 E-value=3.5e-15 Score=177.06 Aligned_cols=395 Identities=17% Similarity=0.174 Sum_probs=205.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHc-CCCc
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMN 360 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~-p~~~ 360 (1232)
..+|||||.++++-....+..+.+|=|.+.+|+|||.+++-+...+.. ..+|.+||. ++|.|-.+|...-. -+++
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~~ 235 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDFR 235 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHHhhccCccce
Confidence 368999999999999899999999999999999999999988887755 478999995 78888666654322 1223
Q ss_pred -EEEEEcChhHHH--HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc--ccCCCceeEEEEc
Q 000903 361 -VVMYVGTSQARN--IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVD 435 (1232)
Q Consensus 361 -vv~~~g~~~~r~--~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~--~l~~i~w~~vIvD 435 (1232)
+.|...++-+|. .|.-+++-+|.......-. ..........+--||++||+.+..... ...--.|++||+|
T Consensus 236 a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il----~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicD 311 (1518)
T COG4889 236 ASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDIL----SEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICD 311 (1518)
T ss_pred eEEEecCccccccccccccccCCCCCcccHHHHH----HHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEec
Confidence 333333333332 2333333333322110000 000111123445699999999866433 3444579999999
Q ss_pred CcccccCc------ccHHHHH--HHhcccccEEEEecCCCC------CCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhh
Q 000903 436 EGHRLKNK------DSKLFSS--LKQYSTRHRVLLTGTPLQ------NNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1232)
Q Consensus 436 EaHrlKn~------~S~~~~~--l~~l~~~~rllLTGTPlq------N~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~ 501 (1232)
||||--+. .|..++. -..+++..||.|||||-- .+..+--+.+ ..+.+...|.+.|..+.-
T Consensus 312 EAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l-----~SMDDe~~fGeef~rl~F 386 (1518)
T COG4889 312 EAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL-----SSMDDELTFGEEFHRLGF 386 (1518)
T ss_pred chhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee-----eccchhhhhchhhhcccH
Confidence 99996431 1111111 123456789999999921 0111100000 011223334444433322
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhc-CCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCc---------chhHHH
Q 000903 502 EEQISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA---------QISLIN 571 (1232)
Q Consensus 502 ~~~~~~L~~~L~p~~lRR~k~dv~~~-LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~---------~~~l~~ 571 (1232)
.+. |..+ |...+..++.|.---.+.. ........+. .....|
T Consensus 387 geA-------------------v~rdlLTDYKVmvlaVd~~~i~~~---------~~~~~~~~~~~L~~dd~~kIvG~wn 438 (1518)
T COG4889 387 GEA-------------------VERDLLTDYKVMVLAVDKEVIAGV---------LQSVLSGPSKGLALDDVSKIVGCWN 438 (1518)
T ss_pred HHH-------------------HHhhhhccceEEEEEechhhhhhh---------hhhhccCcccccchhhhhhhhhhhh
Confidence 222 2222 3344444544432111111 1111111110 011112
Q ss_pred HHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcE
Q 000903 572 VVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (1232)
Q Consensus 572 il~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~ 651 (1232)
-++.--.- ..|-.--.....+....-.+..-++.|.++.-...-+.... ..++..+ .....++.
T Consensus 439 Glakr~g~-~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y--------------~~Elk~d-~~nL~iSi 502 (1518)
T COG4889 439 GLAKRNGE-DNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAY--------------DEELKKD-FKNLKISI 502 (1518)
T ss_pred hhhhhccc-cccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------HHHHHhc-CCCceEEe
Confidence 22110000 00000000000000111112222333333222111111000 0111222 22234567
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCC-ceEEE
Q 000903 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIF 730 (1232)
Q Consensus 652 ~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k-~V~Vy 730 (1232)
..+||+|...+|......-|........+|-..|++++|+++++.|.||||||--+-...+||.||+-|....| --+|.
T Consensus 503 ~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYII 582 (1518)
T COG4889 503 DHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYII 582 (1518)
T ss_pred ecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEE
Confidence 78999999999966665544433444457899999999999999999999999888888899999999977554 34444
Q ss_pred EEe
Q 000903 731 RLI 733 (1232)
Q Consensus 731 rlv 733 (1232)
-.|
T Consensus 583 LPI 585 (1518)
T COG4889 583 LPI 585 (1518)
T ss_pred EEe
Confidence 444
No 78
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.65 E-value=3.6e-15 Score=179.89 Aligned_cols=351 Identities=17% Similarity=0.190 Sum_probs=215.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeC-CccHHHHHHHHHHHcCCC
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~-~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P-~sll~qW~~E~~~~~p~~ 359 (1232)
...+|+||..+++-+...+.+++ .++|++.+|+|||.+||+++..|+..+ .+++|.++- ++++.|=..+|..+.|+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 46799999999999998888765 488999999999999999999998865 469999999 678889899999999986
Q ss_pred cEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc-------ccCCCceeEE
Q 000903 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQCM 432 (1232)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~-------~l~~i~w~~v 432 (1232)
....+..... ....+.|.|+||+++..... .+..-.||+|
T Consensus 243 ~~~n~i~~~~---------------------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlI 289 (875)
T COG4096 243 TKMNKIEDKK---------------------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLI 289 (875)
T ss_pred cceeeeeccc---------------------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEE
Confidence 6655433221 11257899999999976432 2333369999
Q ss_pred EEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhh
Q 000903 433 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1232)
Q Consensus 433 IvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L 512 (1232)
|||||||- ..++ ++.+..+-...+++|||||-..--..-|.+++ =.|-.
T Consensus 290 vIDEaHRg--i~~~-~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-g~Pt~--------------------------- 338 (875)
T COG4096 290 VIDEAHRG--IYSE-WSSILDYFDAATQGLTATPKETIDRSTYGFFN-GEPTY--------------------------- 338 (875)
T ss_pred Eechhhhh--HHhh-hHHHHHHHHHHHHhhccCcccccccccccccC-CCcce---------------------------
Confidence 99999983 2222 22333333455667799995422111111111 00000
Q ss_pred hhhhhhhhhhhHhh-cCCCcEEE--EEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCC
Q 000903 513 APHLLRRVKKDVMK-ELPPKKEL--ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1232)
Q Consensus 513 ~p~~lRR~k~dv~~-~LP~k~e~--~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~ 589 (1232)
..-.+..|.. .|-|...+ .+.+..... .|...-++ ..+. .+ .++.
T Consensus 339 ----~YsleeAV~DGfLvpy~vi~i~~~~~~~G~---~~~~~ser--ek~~----------------g~------~i~~- 386 (875)
T COG4096 339 ----AYSLEEAVEDGFLVPYKVIRIDTDFDLDGW---KPDAGSER--EKLQ----------------GE------AIDE- 386 (875)
T ss_pred ----eecHHHHhhccccCCCCceEEeeeccccCc---CcCccchh--hhhh----------------cc------ccCc-
Confidence 0000111111 12222222 222221110 01110000 0000 00 0000
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHc---C---ceEEEEecchhHHHHHHHHHhhC-----CCcEEEEeCCC
Q 000903 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ---G---HRVLIYSQFQHMLDLLEDYLTFK-----KWQYERIDGKV 658 (1232)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~---g---~KvLIFsq~~~~ldiL~~~L~~~-----g~~~~ridG~~ 658 (1232)
++.......+...+-...--..+.+.+.....+ | .|.||||....+++.|...|... |-=...|+|..
T Consensus 387 -dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~ 465 (875)
T COG4096 387 -DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA 465 (875)
T ss_pred -ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc
Confidence 000000000001111112223344444444433 3 49999999999999999998653 23356788876
Q ss_pred CHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcC-------CCC-ceEEE
Q 000903 659 GGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG-------QTN-KVMIF 730 (1232)
Q Consensus 659 ~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiG-------Q~k-~V~Vy 730 (1232)
. +-++.|+.|-. ....-.+.+|......|||.+.+-.+||+-.--+-..+.|.+||+-|+- |.| ...|+
T Consensus 466 ~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~if 542 (875)
T COG4096 466 E--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIF 542 (875)
T ss_pred h--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEE
Confidence 4 45677999976 3344468999999999999999999999999999999999999999963 333 35677
Q ss_pred EEe
Q 000903 731 RLI 733 (1232)
Q Consensus 731 rlv 733 (1232)
.++
T Consensus 543 Df~ 545 (875)
T COG4096 543 DFV 545 (875)
T ss_pred Ehh
Confidence 765
No 79
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.65 E-value=1e-14 Score=167.01 Aligned_cols=327 Identities=16% Similarity=0.238 Sum_probs=221.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCCCC-----CeEEEeCCccH-HHHHHHHHHHc-
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-----PHLVVAPLSTL-RNWEREFATWA- 356 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~~-----p~LIV~P~sll-~qW~~E~~~~~- 356 (1232)
.|..-|...+-.. -.|..+|=|.-+|+|||+.. +-+|..|+....+ -.|||.|+.-| .|--.-+.+..
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 4667788876543 46888889999999999875 5566777765433 67999997544 45444444433
Q ss_pred -CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc---cccCCCceeEE
Q 000903 357 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCM 432 (1232)
Q Consensus 357 -p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~---~~l~~i~w~~v 432 (1232)
.++..-.+.|..+...... .....+|+|+|+..+.... ..|..-...++
T Consensus 167 ~h~fSaGLiiGG~~~k~E~e---------------------------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELE---------------------------RISQMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred ccccccceeecCchhHHHHH---------------------------hhhcCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 2566666667665332111 1246789999999997653 34555577899
Q ss_pred EEcCcccccCcc--cHHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000903 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1232)
Q Consensus 433 IvDEaHrlKn~~--S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1232)
|+|||.|+-..+ ..+-..+..+. .+..||.|||+ .+++.+|.-| ++-+|...+-.
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATq-t~svkdLaRL-sL~dP~~vsvh-------------------- 277 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQ-TKSVKDLARL-SLKDPVYVSVH-------------------- 277 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhCChhheeeeeeccc-chhHHHHHHh-hcCCCcEEEEe--------------------
Confidence 999999997654 33444555554 34569999998 4556665432 22334322100
Q ss_pred HhhhhhhhhhhhhhHhhcCCC-cEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC
Q 000903 510 RMLAPHLLRRVKKDVMKELPP-KKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~-k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
-..+. ..|. .....+.|++
T Consensus 278 -----------e~a~~-atP~~L~Q~y~~v~l------------------------------------------------ 297 (758)
T KOG0343|consen 278 -----------ENAVA-ATPSNLQQSYVIVPL------------------------------------------------ 297 (758)
T ss_pred -----------ccccc-cChhhhhheEEEEeh------------------------------------------------
Confidence 00000 0010 0011111111
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhh--CCCcEEEEeCCCCHHHHHHH
Q 000903 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQIR 666 (1232)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~--~g~~~~ridG~~~~~eRq~~ 666 (1232)
..|+..|...|.... ..|.|||...-..+..+...+.. -|++...++|.+++..|-.+
T Consensus 298 ------------------~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev 357 (758)
T KOG0343|consen 298 ------------------EDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEV 357 (758)
T ss_pred ------------------hhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHH
Confidence 224445555554432 45899998888888888777754 39999999999999999999
Q ss_pred HHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHH
Q 000903 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1232)
Q Consensus 667 i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~ 746 (1232)
..+|..... ++|.+|..++.||+++++|.||-+|.|-+...|++|.||..|.+..-...+| ...+-||.|+..+
T Consensus 358 ~~~F~~~~~---~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~---L~psEeE~~l~~L 431 (758)
T KOG0343|consen 358 YKKFVRKRA---VVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM---LTPSEEEAMLKKL 431 (758)
T ss_pred HHHHHHhcc---eEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE---EcchhHHHHHHHH
Confidence 999976433 5899999999999999999999999999999999999999999877666543 3345578898888
Q ss_pred HHHH
Q 000903 747 KKKM 750 (1232)
Q Consensus 747 ~~K~ 750 (1232)
++|.
T Consensus 432 q~k~ 435 (758)
T KOG0343|consen 432 QKKK 435 (758)
T ss_pred HHcC
Confidence 8775
No 80
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=2.7e-14 Score=156.55 Aligned_cols=317 Identities=18% Similarity=0.242 Sum_probs=208.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHH-HHHHHHHHhhCCCC-CeEEEeCCccH-HHHHHHHHHHc--CCC
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWA--PQM 359 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiq-aia~l~~l~~~~~~-p~LIV~P~sll-~qW~~E~~~~~--p~~ 359 (1232)
+.-|-|...+-.+ -.|+.||=+.-+|+|||.. ++-++..|.....+ -.||++|..-+ .|-...|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 4567888887655 5789999999999999976 35555555555555 56999997655 45555554433 356
Q ss_pred cEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc-ccCCC-----ceeEEE
Q 000903 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-SLKPI-----KWQCMI 433 (1232)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~-~l~~i-----~w~~vI 433 (1232)
++.+++|..+-- .+. ..-..+.||||+|++.+..... .+... +-.++|
T Consensus 105 K~~vivGG~d~i---~qa-----------------------~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 105 KVSVIVGGTDMI---MQA-----------------------AILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred eEEEEEccHHHh---hhh-----------------------hhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 777888876532 111 0112467999999998754321 11112 336899
Q ss_pred EcCcccccCccc--HHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000903 434 VDEGHRLKNKDS--KLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1232)
Q Consensus 434 vDEaHrlKn~~S--~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~ 510 (1232)
+|||.++-+..- .+......+.. +--+++|||= .+++.+++.
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~---------------------------------- 203 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG---------------------------------- 203 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc----------------------------------
Confidence 999999765421 11111122222 2446667662 222221110
Q ss_pred hhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCC
Q 000903 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1232)
Q Consensus 511 ~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e 590 (1232)
.|-.. +.+|..+...
T Consensus 204 -----------------~~i~k------------------------------------------------~~a~~~e~~~ 218 (442)
T KOG0340|consen 204 -----------------CPITK------------------------------------------------SIAFELEVID 218 (442)
T ss_pred -----------------CCccc------------------------------------------------ccceEEeccC
Confidence 00000 0001000000
Q ss_pred CCcccchHHH---HHHHhhhhHHHHHHHHHHHHHH-cCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHH
Q 000903 591 PDIEDTNESF---KQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1232)
Q Consensus 591 ~~~~~~~~~~---~~li~~S~Kl~~L~klL~~l~~-~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~ 666 (1232)
.. ...+.+ ..++...+|-..|..+|....+ ....++||.|.+....+|.-.|+..++.+..+++.+++.+|-.+
T Consensus 219 ~v--stvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 219 GV--STVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred CC--CchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 00 000000 1123345677888889988877 56789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcH
Q 000903 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1232)
Q Consensus 667 i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~Tv 738 (1232)
+.+|.++.. .+|++|++++.|+++++++.||+||.|-.|..|++|.||..|.|..-.. .-++|...|
T Consensus 297 LsrFrs~~~---~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a--iSivt~rDv 363 (442)
T KOG0340|consen 297 LSRFRSNAA---RILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA--ISIVTQRDV 363 (442)
T ss_pred HHHHhhcCc---cEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcce--EEEechhhH
Confidence 999976444 4899999999999999999999999999999999999999998876432 234554433
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.65 E-value=2e-14 Score=188.52 Aligned_cols=295 Identities=16% Similarity=0.187 Sum_probs=183.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCC--C
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~--~ 359 (1232)
|..+.|+|..++..+ ..+.++++..+||+|||..++..+..+. .....+|||+|+ .++.|+...|..++.. +
T Consensus 78 G~~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~l~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLYLA-KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 356889999887655 5788999999999999965444333332 233589999996 6668999999998754 3
Q ss_pred cEEEEEcChh----HHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEc
Q 000903 360 NVVMYVGTSQ----ARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1232)
Q Consensus 360 ~vv~~~g~~~----~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvD 435 (1232)
.+.+..|... .+..... . .....++|+|+|++.+......+....+++||||
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~-~-----------------------l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvD 208 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLE-R-----------------------LKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVD 208 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHH-H-----------------------HhcCCCCEEEECHHHHHHHHHhccccccCEEEEE
Confidence 4434443321 1111100 0 0123589999999999876666666679999999
Q ss_pred CcccccCcc--------------cHHHHHHHhcc-------------------------cccEEEEecCCCCCCHHHHHH
Q 000903 436 EGHRLKNKD--------------SKLFSSLKQYS-------------------------TRHRVLLTGTPLQNNLDELFM 476 (1232)
Q Consensus 436 EaHrlKn~~--------------S~~~~~l~~l~-------------------------~~~rllLTGTPlqN~~~EL~~ 476 (1232)
|||++-... ..+..++..+. ....++.|||.-......
T Consensus 209 EaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--- 285 (1176)
T PRK09401 209 DVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--- 285 (1176)
T ss_pred ChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---
Confidence 999975311 11112222211 122345555542111000
Q ss_pred HHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHH
Q 000903 477 LMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNY 556 (1232)
Q Consensus 477 Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~ 556 (1232)
.++..++.
T Consensus 286 ---------------------------------------------------------------------~l~~~ll~--- 293 (1176)
T PRK09401 286 ---------------------------------------------------------------------KLFRELLG--- 293 (1176)
T ss_pred ---------------------------------------------------------------------HHhhccce---
Confidence 00000000
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhH
Q 000903 557 QILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 636 (1232)
Q Consensus 557 ~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ 636 (1232)
+. -+..... ++.+ .|-|. ....|...|.+++..+ |..+|||++....
T Consensus 294 --~~-v~~~~~~-------~rnI-~~~yi-------------------~~~~k~~~L~~ll~~l---~~~~LIFv~t~~~ 340 (1176)
T PRK09401 294 --FE-VGSPVFY-------LRNI-VDSYI-------------------VDEDSVEKLVELVKRL---GDGGLIFVPSDKG 340 (1176)
T ss_pred --EE-ecCcccc-------cCCc-eEEEE-------------------EcccHHHHHHHHHHhc---CCCEEEEEecccC
Confidence 00 0000000 0000 01110 0012445555565543 5689999998776
Q ss_pred ---HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee----ccccccccccCC-CCEEEEEcCCC--
Q 000903 637 ---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW-- 706 (1232)
Q Consensus 637 ---ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~Lls----Tragg~GINL~~-ad~VIi~D~dW-- 706 (1232)
++.|.++|...|+++..++|++ ...+++|.++..+ +||+ |..+++|||++. ...||+||.|-
T Consensus 341 ~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~ 412 (1176)
T PRK09401 341 KEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFK 412 (1176)
T ss_pred hHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCEE
Confidence 9999999999999999999999 2346999775544 6777 689999999998 89999999987
Q ss_pred ----ChhhHHHHHHhhhhcC
Q 000903 707 ----NPHADLQAMARAHRLG 722 (1232)
Q Consensus 707 ----Np~~~~Qa~gR~hRiG 722 (1232)
.......+++|...+-
T Consensus 413 ~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 413 FSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred EeccccccCHHHHHHHHhhc
Confidence 5667788888887543
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.65 E-value=8.6e-14 Score=175.58 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=103.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~~vv 362 (1232)
..|.++|.++++.+...+ .+...+|...+|.|||...+..+......+ +.+||++|. .+..|+.+.|.+.+ +..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF-GAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCCEE
Confidence 469999999998886543 456789999999999999877776655543 479999996 67799999999887 46888
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccC
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn 442 (1232)
+++|..........+.- ......+|+|+|+..+.. .+ -+..+|||||+|...-
T Consensus 220 ~~~s~~s~~~r~~~~~~----------------------~~~g~~~IVVgTrsal~~---p~--~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 220 VLHSGLSDGERLDEWRK----------------------AKRGEAKVVIGARSALFL---PF--KNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEECCCCHHHHHHHHHH----------------------HHcCCCCEEEeccHHhcc---cc--cCCCEEEEECCCcccc
Confidence 88887544332221100 011356899999876531 12 2467999999997632
Q ss_pred c--ccHHH-----HHHH-hcccccEEEEecCC
Q 000903 443 K--DSKLF-----SSLK-QYSTRHRVLLTGTP 466 (1232)
Q Consensus 443 ~--~S~~~-----~~l~-~l~~~~rllLTGTP 466 (1232)
. ....+ ..++ .......+++||||
T Consensus 273 ~~~~~p~y~~r~va~~ra~~~~~~~il~SATp 304 (679)
T PRK05580 273 KQQEGPRYHARDLAVVRAKLENIPVVLGSATP 304 (679)
T ss_pred ccCcCCCCcHHHHHHHHhhccCCCEEEEcCCC
Confidence 2 11111 1111 22345678999999
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.63 E-value=2e-14 Score=183.32 Aligned_cols=332 Identities=19% Similarity=0.217 Sum_probs=222.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHc---C-
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWA---P- 357 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~---p- 357 (1232)
..|+.||.++++.+ .+|+++|+.-.||+|||... +.++..+........|+|-|. .+.......|.+|. |
T Consensus 69 ~~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 69 ERLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred ccccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 34999999999887 78899999999999999997 455566666666689999995 55566788888876 4
Q ss_pred CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc------ccccCCCceeE
Q 000903 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPIKWQC 431 (1232)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d------~~~l~~i~w~~ 431 (1232)
.+.+..|+|+........ + -..+.+|++|+|+|+... ......-.+.+
T Consensus 145 ~v~~~~y~Gdt~~~~r~~---~-----------------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~ 198 (851)
T COG1205 145 KVTFGRYTGDTPPEERRA---I-----------------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKY 198 (851)
T ss_pred cceeeeecCCCChHHHHH---H-----------------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcE
Confidence 467788988865432210 0 124789999999999652 11111123789
Q ss_pred EEEcCcccccCc-ccHHHHHHHhcc--------cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhH
Q 000903 432 MIVDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQE 502 (1232)
Q Consensus 432 vIvDEaHrlKn~-~S~~~~~l~~l~--------~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~ 502 (1232)
|||||+|-.++. .|.+.-.++.+. ....++.|||- ++..+|...+......
T Consensus 199 lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~ 258 (851)
T COG1205 199 LVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE 258 (851)
T ss_pred EEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce
Confidence 999999999874 344444444432 23558888883 2333333332111000
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHhhc-CCCcEE-EEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHh
Q 000903 503 EQISRLHRMLAPHLLRRVKKDVMKE-LPPKKE-LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 580 (1232)
Q Consensus 503 ~~~~~L~~~L~p~~lRR~k~dv~~~-LP~k~e-~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c 580 (1232)
..+..+ -|.... .+++-+........
T Consensus 259 -------------------~~v~~~g~~~~~~~~~~~~p~~~~~~~~--------------------------------- 286 (851)
T COG1205 259 -------------------VPVDEDGSPRGLRYFVRREPPIRELAES--------------------------------- 286 (851)
T ss_pred -------------------eeccCCCCCCCceEEEEeCCcchhhhhh---------------------------------
Confidence 001111 111111 11111111100000
Q ss_pred CCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHH----HHHhhCC----CcEE
Q 000903 581 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKK----WQYE 652 (1232)
Q Consensus 581 ~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~----~~L~~~g----~~~~ 652 (1232)
..-.+...+..++..+...|-++|+|+.....+..+. ..+...+ ..+.
T Consensus 287 ------------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~ 342 (851)
T COG1205 287 ------------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVS 342 (851)
T ss_pred ------------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhhee
Confidence 0123455666777778888999999999999988885 3333344 5688
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC-ChhhHHHHHHhhhhcCCCCceEEEE
Q 000903 653 RIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVMIFR 731 (1232)
Q Consensus 653 ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW-Np~~~~Qa~gR~hRiGQ~k~V~Vyr 731 (1232)
.+.|.+..++|..+...|..++. .++++|.|.-.||++.+.|.||.+--|- .-..+.|+.||++|-||.-.+ +.
T Consensus 343 ~~~~~~~~~er~~ie~~~~~g~~---~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~--~~ 417 (851)
T COG1205 343 TYRAGLHREERRRIEAEFKEGEL---LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLV--LV 417 (851)
T ss_pred eccccCCHHHHHHHHHHHhcCCc---cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceE--EE
Confidence 89999999999999999977554 4899999999999999999999999988 779999999999999954333 23
Q ss_pred EeeCCcHHHHHHHHH
Q 000903 732 LITRGSIEERMMQMT 746 (1232)
Q Consensus 732 lvt~~TvEE~i~~~~ 746 (1232)
..-.+.++..++..-
T Consensus 418 v~~~~~~d~yy~~~p 432 (851)
T COG1205 418 VLRSDPLDSYYLRHP 432 (851)
T ss_pred EeCCCccchhhhhCc
Confidence 333666777665433
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.63 E-value=4.2e-14 Score=169.18 Aligned_cols=305 Identities=17% Similarity=0.279 Sum_probs=201.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH-HHHHHHHHHHcC--C
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--Q 358 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~--~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll-~qW~~E~~~~~p--~ 358 (1232)
.+|-..|..+++=+..=.... -+=+|--++|+|||+.|+..+......+ .-..+++|+.+| .|-...|.+|++ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 568889999998775444433 3457889999999999876666555544 367889999888 678899999996 5
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcc
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaH 438 (1232)
++|...+|+-.........+- ......++||-|+..+.....+ .+..+||+||=|
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~----------------------l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQH 394 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQ----------------------LASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQH 394 (677)
T ss_pred CeEEEeecccchhHHHHHHHH----------------------HhCCCCCEEEEcchhhhcceee---cceeEEEEeccc
Confidence 778888888654332111110 1225678999999888644332 245799999999
Q ss_pred cccCcccHHHHHHHhcc--cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhh
Q 000903 439 RLKNKDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~ 516 (1232)
|+.- .....|+.-. ..|.|.|||||++-.+. ...|+++.
T Consensus 395 RFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDld---------------- 435 (677)
T COG1200 395 RFGV---HQRLALREKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLD---------------- 435 (677)
T ss_pred cccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHH--------------------HHHhcccc----------------
Confidence 9853 3333444432 57999999999865531 11122211
Q ss_pred hhhhhhhHhhcCCCcEEEEEeccCC-HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000903 517 LRRVKKDVMKELPPKKELILRVELS-SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1232)
Q Consensus 517 lRR~k~dv~~~LP~k~e~~v~v~ls-~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~~ 595 (1232)
-.+.+++||...-+...-+. ..-.++|..|.
T Consensus 436 -----vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~------------------------------------------- 467 (677)
T COG1200 436 -----VSIIDELPPGRKPITTVVIPHERRPEVYERIR------------------------------------------- 467 (677)
T ss_pred -----chhhccCCCCCCceEEEEeccccHHHHHHHHH-------------------------------------------
Confidence 12345788753222222221 11122232221
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhH--------HHHHHHHHh--hCCCcEEEEeCCCCHHHHHH
Q 000903 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM--------LDLLEDYLT--FKKWQYERIDGKVGGAERQI 665 (1232)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~--------ldiL~~~L~--~~g~~~~ridG~~~~~eRq~ 665 (1232)
.+ ..+|+++.+.|.-+.. ...+...|. ..++.+..++|.|+++++++
T Consensus 468 ----------------------~e-i~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 468 ----------------------EE-IAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred ----------------------HH-HHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 11 1245555555544321 222223333 23677999999999999999
Q ss_pred HHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCC-CChhhHHHHHHhhhhcCCCCce
Q 000903 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 727 (1232)
Q Consensus 666 ~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~d-WNp~~~~Qa~gR~hRiGQ~k~V 727 (1232)
++.+|.++..+ +|+||.+..+|||++.|..+||++.+ +--++.-|-.||++|=+...-|
T Consensus 525 vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 525 VMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 99999876655 89999999999999999999999997 6788889999999996544433
No 85
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.62 E-value=1.6e-15 Score=151.31 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecccc
Q 000903 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1232)
Q Consensus 608 ~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTrag 687 (1232)
.|+..+..++....+.+.++|||++....++.+.++|...+..+..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888888887767899999999999999999999988999999999999999999999998755 4589999999
Q ss_pred ccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000903 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1232)
Q Consensus 688 g~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1232)
++|+|++.+++||+++++||+..++|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877764
No 86
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=2.8e-14 Score=161.79 Aligned_cols=319 Identities=18% Similarity=0.281 Sum_probs=212.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH-HHHHhhC-----CCCCe-EEEeCC-ccHHHHHHHHHHHc
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE-----RISPH-LVVAPL-STLRNWEREFATWA 356 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~-l~~l~~~-----~~~p~-LIV~P~-sll~qW~~E~~~~~ 356 (1232)
+..|-|-.+|--. -.+..+|=..-+|.|||...+.- +.++..+ +.+|+ ||+||. ++..|-..|.++|+
T Consensus 245 kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 3455565655322 34666776667999999654332 2333221 34577 677885 66688899998885
Q ss_pred --CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeEE
Q 000903 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1232)
Q Consensus 357 --p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~v 432 (1232)
-+++++..+|....-..+... .....+||+|++.+.... ....-.+..+|
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~L--------------------------k~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKEL--------------------------KEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhh--------------------------hcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 468888877776544443332 145679999999886432 11222345689
Q ss_pred EEcCcccccCcc--cHHHHHHHhccccc-EEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000903 433 IVDEGHRLKNKD--SKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1232)
Q Consensus 433 IvDEaHrlKn~~--S~~~~~l~~l~~~~-rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1232)
|+|||.|+-... .+.......++.++ .|+.|+|- . ..+.+|.
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~la 419 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKLA 419 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHHH
Confidence 999999986543 33334444455444 57888882 1 1111111
Q ss_pred HhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCC
Q 000903 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1232)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~ 589 (1232)
.+++. -|.......|.+-.. . +.+.--+|
T Consensus 420 ------------rd~L~--dpVrvVqg~vgean~------------------------d----ITQ~V~V~--------- 448 (731)
T KOG0339|consen 420 ------------RDILS--DPVRVVQGEVGEANE------------------------D----ITQTVSVC--------- 448 (731)
T ss_pred ------------HHHhc--CCeeEEEeehhcccc------------------------c----hhheeeec---------
Confidence 11110 111111111111000 0 00000001
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHH
Q 000903 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1232)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~ 669 (1232)
-....|+..|.+-|......| +||||..-....+-|...|..+|+++..++|++.+.+|.+.|..
T Consensus 449 --------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 449 --------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred --------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 112346777776666666555 89999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHH
Q 000903 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1232)
Q Consensus 670 Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1232)
|...... +|+.|....+|+++...-|||+||.--.-....|++||.+|-|-+ -..|-|||+...+
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9876665 899999999999999999999999999999999999999999987 5678999886544
No 87
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=7.8e-14 Score=159.55 Aligned_cols=121 Identities=17% Similarity=0.361 Sum_probs=94.5
Q ss_pred hhhHHH--HHHHHHHHHHH--cCceEEEEecchhHHHHHHHHH----hh------------------CCCcEEEEeCCCC
Q 000903 606 SSGKLQ--LLDKMMVKLKE--QGHRVLIYSQFQHMLDLLEDYL----TF------------------KKWQYERIDGKVG 659 (1232)
Q Consensus 606 ~S~Kl~--~L~klL~~l~~--~g~KvLIFsq~~~~ldiL~~~L----~~------------------~g~~~~ridG~~~ 659 (1232)
..+|+. .|..+|....+ ...|+|||....++++.=.+.| .. .+.++.|++|+|+
T Consensus 403 VPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~ 482 (708)
T KOG0348|consen 403 VPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSME 482 (708)
T ss_pred cCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchh
Confidence 344443 45555554432 3458899988777665433333 22 2457999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEE
Q 000903 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1232)
Q Consensus 660 ~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1232)
+++|..+...|..... ++|++|++++.||||+.++.||-||+|..+..+++|+||..|+|-+-.-..
T Consensus 483 QeeRts~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL 549 (708)
T KOG0348|consen 483 QEERTSVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL 549 (708)
T ss_pred HHHHHHHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE
Confidence 9999999999976554 489999999999999999999999999999999999999999998866553
No 88
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.59 E-value=3.2e-14 Score=165.05 Aligned_cols=309 Identities=18% Similarity=0.243 Sum_probs=204.6
Q ss_pred cHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCCCC-CeEEEeCCccH-HHHHHHHHHHcC---CCc
Q 000903 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWAP---QMN 360 (1232)
Q Consensus 287 ~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~~-p~LIV~P~sll-~qW~~E~~~~~p---~~~ 360 (1232)
.+-|..++-.. ..+-..|+..-.|+|||+.. ++.+..|-..... -.+||+|.--+ -|-+..|...+| +++
T Consensus 49 tkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~ 124 (980)
T KOG4284|consen 49 TKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGAR 124 (980)
T ss_pred Cchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcc
Confidence 34666665433 34567899999999999874 3344444333322 67999997555 677888888776 578
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc--ccccCCCceeEEEEcCcc
Q 000903 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d--~~~l~~i~w~~vIvDEaH 438 (1232)
+.+|.|...-...... ..+.+|+|-|+..+..- ...+..-+.+++|+|||.
T Consensus 125 csvfIGGT~~~~d~~r---------------------------lk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD 177 (980)
T KOG4284|consen 125 CSVFIGGTAHKLDLIR---------------------------LKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD 177 (980)
T ss_pred eEEEecCchhhhhhhh---------------------------hhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH
Confidence 8888887654322111 13567999999988653 344555567899999999
Q ss_pred cccCccc---HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhh-
Q 000903 439 RLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA- 513 (1232)
Q Consensus 439 rlKn~~S---~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~- 513 (1232)
.|-...| .+...+..+. .+-.+..|||=- .++.+ .|.+.++
T Consensus 178 kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp-~nLdn---------------------------------~Lsk~mrd 223 (980)
T KOG4284|consen 178 KLMDTESFQDDINIIINSLPQIRQVAAFSATYP-RNLDN---------------------------------LLSKFMRD 223 (980)
T ss_pred hhhchhhHHHHHHHHHHhcchhheeeEEeccCc-hhHHH---------------------------------HHHHHhcc
Confidence 9976554 3445555554 455678899831 11111 2222222
Q ss_pred hhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCc
Q 000903 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1232)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~ 593 (1232)
|.++|-...|+ .|-....+++.+.-- .|..
T Consensus 224 p~lVr~n~~d~--~L~GikQyv~~~~s~----------------------------nnsv-------------------- 253 (980)
T KOG4284|consen 224 PALVRFNADDV--QLFGIKQYVVAKCSP----------------------------NNSV-------------------- 253 (980)
T ss_pred cceeecccCCc--eeechhheeeeccCC----------------------------cchH--------------------
Confidence 22222222222 111111111111000 0000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 000903 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1232)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~ 673 (1232)
+. .--|++.|-.++..+. -...||||....-.+-|.++|...|+.+..|.|.|+..+|..+++.+.+
T Consensus 254 -------ee---mrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~- 320 (980)
T KOG4284|consen 254 -------EE---MRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA- 320 (980)
T ss_pred -------HH---HHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-
Confidence 00 0114444444444432 2357999999999999999999999999999999999999999999965
Q ss_pred CCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCC
Q 000903 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1232)
Q Consensus 674 ~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k 725 (1232)
....+|+||+..+.||+-..++.||.+|++-+-..+.+|||||+|.|..-
T Consensus 321 --f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 321 --FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred --ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 34569999999999999999999999999999999999999999999764
No 89
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=6.7e-15 Score=155.90 Aligned_cols=165 Identities=26% Similarity=0.408 Sum_probs=110.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCC
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 359 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~ 359 (1232)
.+|||||.+++.-+...+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 369999999998887777654 88999999999999999998888877 89999997 77799999998888654
Q ss_pred cEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccc-------------cCC
Q 000903 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------------LKP 426 (1232)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~-------------l~~ 426 (1232)
............. ....... ...............++++++++.+...... +..
T Consensus 78 ~~~~~~~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T PF04851_consen 78 YNFFEKSIKPAYD----SKEFISI---------QDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLK 144 (184)
T ss_dssp EEEEE--GGGCCE-----SEEETT---------TTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGG
T ss_pred hhhcccccccccc----ccccccc---------ccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcc
Confidence 4443221110000 0000000 0000000111234678999999999765322 222
Q ss_pred CceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCC
Q 000903 427 IKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1232)
Q Consensus 427 i~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPl 467 (1232)
-.+++||+||||++.+... ++.+..+...++|+|||||.
T Consensus 145 ~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 3688999999999876554 55555578889999999994
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=2.6e-13 Score=165.48 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=75.6
Q ss_pred HHHHHHHHhhC--CCcEEEEeCCCCHHHH--HHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC---Ch-
Q 000903 637 LDLLEDYLTFK--KWQYERIDGKVGGAER--QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---NP- 708 (1232)
Q Consensus 637 ldiL~~~L~~~--g~~~~ridG~~~~~eR--q~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW---Np- 708 (1232)
.+.+++.|... +.++.++|++++..++ +++++.|.++..+ +|++|...+.|+|++.++.|+++|.|- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 57777888665 7899999999887665 8899999875444 899999999999999999998887763 23
Q ss_pred --------hhHHHHHHhhhhcCCCCceEEEEE
Q 000903 709 --------HADLQAMARAHRLGQTNKVMIFRL 732 (1232)
Q Consensus 709 --------~~~~Qa~gR~hRiGQ~k~V~Vyrl 732 (1232)
+.+.|+.||++|-+....|.|.-.
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 678999999999887777765433
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=2.5e-13 Score=169.16 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=111.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|..++.+-+..+...|..|||||.++...+.|..+|...|+++..++|.....+|+.+.+.|..+ .++|+|.
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-----~VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-----AVTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-----cEEEecc
Confidence 46789999999999999999999999999999999999999999999999999999999999999764 2799999
Q ss_pred ccccccccCCC--------------------------------------CEEEEEcCCCChhhHHHHHHhhhhcCCCCce
Q 000903 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1232)
Q Consensus 686 agg~GINL~~a--------------------------------------d~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V 727 (1232)
.+|.|+|+.=. =+||.-.-.-|-..|.|..||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 99999997621 2788888999999999999999999987665
Q ss_pred EEEEEeeCCcHHHHHHHH
Q 000903 728 MIFRLITRGSIEERMMQM 745 (1232)
Q Consensus 728 ~Vyrlvt~~TvEE~i~~~ 745 (1232)
..|- |+|..++.+
T Consensus 581 ~f~l-----SleD~l~~~ 593 (896)
T PRK13104 581 RFYL-----SLEDNLMRI 593 (896)
T ss_pred EEEE-----EcCcHHHHH
Confidence 5443 345555543
No 92
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=99.57 E-value=6.5e-17 Score=156.01 Aligned_cols=100 Identities=25% Similarity=0.346 Sum_probs=80.5
Q ss_pred CCcccCCCccCccchHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCCCCCCCCcCHHHHHHHHHHHHhhhh--
Q 000903 1024 SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGY-- 1101 (1232)
Q Consensus 1024 ~~~~~~~i~k~~~k~~~vl~ri~~~~~l~~Kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~w~~eeD~~LL~~i~~~Gy-- 1101 (1232)
|+++++.|++|+.|++.. ...+.+|++||+.|. +| + .+|.++||++++++.||+++|||||+++|+|||
T Consensus 1 ~ek~i~~IE~gE~k~~k~---~~~~~~l~~Kv~~~~-~P---~--~~L~i~y~~~~~~k~yseeEDRfLl~~~~~~G~~~ 71 (118)
T PF09111_consen 1 WEKIIKRIEKGEKKIEKR---KEQQEALRKKVEQYK-NP---W--QELKINYPPNNKKKVYSEEEDRFLLCMLYKYGYDA 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCC-S-SH---H--HH---SSTSTSS-SSS-HHHHHHHHHHHHHHTTTS
T ss_pred ChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc-CC---H--HHCeeccCCCCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 456778899998887644 456899999999997 66 5 678999998889999999999999999999999
Q ss_pred -hhHHHhhcCc--------cCCchHHhhHhhCCCCCcCCC
Q 000903 1102 -GRWQAIVDDK--------DLKVQEVICQELNLPFINLPV 1132 (1232)
Q Consensus 1102 -g~we~Ik~D~--------~l~l~~~i~~e~~~~~~~~~~ 1132 (1232)
|.|+.|++++ ||+|++++++|+++||.+|+.
T Consensus 72 ~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 72 EGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp TTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 9999988887 999999999999999999874
No 93
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=7.1e-14 Score=154.00 Aligned_cols=324 Identities=18% Similarity=0.244 Sum_probs=198.3
Q ss_pred CcccccccCCCCCCCCC------CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhh-CCCC-CeEEE
Q 000903 268 PKEFQQYEHSPEFLSGG------SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERIS-PHLVV 339 (1232)
Q Consensus 268 ~~~~~~~~~~P~~~~~~------~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~-~~~~-p~LIV 339 (1232)
.+.|..+.-.|..++|. ....-|..++-.| +....++.|-....|+|||......+..-.. .... -.+.+
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPll--l~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCL 166 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLL--LAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICL 166 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchh--hcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceee
Confidence 45678888888877652 3445666666544 3356777888889999999653222222111 1112 35666
Q ss_pred eCC-ccHHHHHHHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHh
Q 000903 340 APL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN 418 (1232)
Q Consensus 340 ~P~-sll~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~ 418 (1232)
+|. .+..|-..-+.+...-..+..-++-+.++ ..+.....-+|+|-|+.++.
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~~ita~yair~sk---------------------------~~rG~~i~eqIviGTPGtv~ 219 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFTELTASYAIRGSK---------------------------AKRGNKLTEQIVIGTPGTVL 219 (477)
T ss_pred CchHHHHHHHHHHHHHhcCceeeeEEEEecCcc---------------------------cccCCcchhheeeCCCccHH
Confidence 995 44455544444433211222222111110 00112345679999999987
Q ss_pred hcccccCCC---ceeEEEEcCcccccCccc---HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHH
Q 000903 419 LDSASLKPI---KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEE 491 (1232)
Q Consensus 419 ~d~~~l~~i---~w~~vIvDEaHrlKn~~S---~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~ 491 (1232)
.....|+.+ ...++|+|||..+-+... ......+.+. ....++.|||-. .....
T Consensus 220 Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~-------------------e~V~~ 280 (477)
T KOG0332|consen 220 DLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV-------------------EKVAA 280 (477)
T ss_pred HHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH-------------------HHHHH
Confidence 665554443 457899999998866542 1222233333 455678888820 00001
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHH
Q 000903 492 FQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLIN 571 (1232)
Q Consensus 492 F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~ 571 (1232)
|...+. .--.+.+|||. ++ .|++..+..+.|.
T Consensus 281 Fa~kiv------------pn~n~i~Lk~e--el--~L~~IkQlyv~C~-------------------------------- 312 (477)
T KOG0332|consen 281 FALKIV------------PNANVIILKRE--EL--ALDNIKQLYVLCA-------------------------------- 312 (477)
T ss_pred HHHHhc------------CCCceeeeehh--hc--cccchhhheeecc--------------------------------
Confidence 110000 00001111110 00 1222222222221
Q ss_pred HHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcE
Q 000903 572 VVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (1232)
Q Consensus 572 il~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~ 651 (1232)
+ ...|+++|..|. .+..-| ..||||+...+...|...|...|+.+
T Consensus 313 ----------~-----------------------~~~K~~~l~~ly-g~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V 357 (477)
T KOG0332|consen 313 ----------C-----------------------RDDKYQALVNLY-GLLTIG-QSIIFCHTKATAMWLYEEMRAEGHQV 357 (477)
T ss_pred ----------c-----------------------hhhHHHHHHHHH-hhhhhh-heEEEEeehhhHHHHHHHHHhcCcee
Confidence 1 123566666533 223333 68999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC------ChhhHHHHHHhhhhcCCCC
Q 000903 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRLGQTN 725 (1232)
Q Consensus 652 ~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW------Np~~~~Qa~gR~hRiGQ~k 725 (1232)
..++|.+...+|..+|++|..+.+. +|++|.++++||+.+.++.||+||.|- .|..|++|+||++|.|.+-
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc
Confidence 9999999999999999999876554 899999999999999999999999875 5789999999999999654
No 94
>PRK09694 helicase Cas3; Provisional
Probab=99.56 E-value=3.6e-13 Score=171.30 Aligned_cols=357 Identities=16% Similarity=0.146 Sum_probs=192.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeCC-ccHHHHHHHHHH----Hc
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFAT----WA 356 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P~-sll~qW~~E~~~----~~ 356 (1232)
+..++|+|....+-. ..++..||-+.||.|||-.|+.++..+...+ ...++++.|. ++..+-...+.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 568999999764321 3456689999999999999999888776643 4588999996 455555555554 34
Q ss_pred CCCcEEEEEcChhHHHHHHHhhhc-CCCCchhhhccccCccccccccccccccEEEecHHHHhhccc-----ccCC--Cc
Q 000903 357 PQMNVVMYVGTSQARNIIREYEFY-FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-----SLKP--IK 428 (1232)
Q Consensus 357 p~~~vv~~~g~~~~r~~i~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~-----~l~~--i~ 428 (1232)
++.++...||............-. .........................-.+|+|+|.+.+..-.- .++. +.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 566788888876432111110000 000000000000000000011112335899999988763211 1111 22
Q ss_pred eeEEEEcCcccccCcccHH-HHHHHhcc--cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000903 429 WQCMIVDEGHRLKNKDSKL-FSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1232)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~-~~~l~~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~ 505 (1232)
-.+|||||+|-+-...+.+ ...|..+. ....++||||+-..-..+|...+..-.+ .
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~--~------------------- 498 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP--V------------------- 498 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc--c-------------------
Confidence 3489999999885433333 33333332 2457999999732111111111000000 0
Q ss_pred HHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCccc
Q 000903 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1232)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L 585 (1232)
......|-... + +... . . .+ .+..|+..
T Consensus 499 -----------------~~~~~YPlvt~----~--~~~~------~-------------~---------~~-~~~~~~~~ 526 (878)
T PRK09694 499 -----------------ELSSAYPLITW----R--GVNG------A-------------Q---------RF-DLSAHPEQ 526 (878)
T ss_pred -----------------ccccccccccc----c--cccc------c-------------e---------ee-eccccccc
Confidence 00000000000 0 0000 0 0 00 00000000
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCC---CcEEEEeCCCCHHH
Q 000903 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAE 662 (1232)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g---~~~~ridG~~~~~e 662 (1232)
.... .... ... ..+-.......++..++.. ...|.+||||++.+..+..+.+.|...+ +++..++|.++..+
T Consensus 527 ~~~~-~~v~-v~~--~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 527 LPAR-FTIQ-LEP--ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred cCcc-eEEE-EEe--eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 0000 0000 000 0000000112233333333 3568899999999999999999998764 67999999999999
Q ss_pred H----HHHHHHHhcCCC-CceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCC
Q 000903 663 R----QIRIDRFNAKNS-SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (1232)
Q Consensus 663 R----q~~i~~Fn~~~s-~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~ 724 (1232)
| +++++.|...+. ....+||+|.+...|||+ .+|.+|....+ ...++||+||+||.|..
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9 467888943222 223589999999999999 57988886665 67899999999999874
No 95
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.55 E-value=1.9e-13 Score=151.50 Aligned_cols=316 Identities=18% Similarity=0.281 Sum_probs=205.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHH--HHHH-----hhCCCC-CeEEEeCCccH-HHHHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF--LASL-----FGERIS-PHLVVAPLSTL-RNWEREFATW 355 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~--l~~l-----~~~~~~-p~LIV~P~sll-~qW~~E~~~~ 355 (1232)
+..|-|-++ |= ....|..+|-...+|.|||+.-+.- +... +....+ ..||++|..-| .|-+-|..++
T Consensus 242 KPtPIqSQa--WP--I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA--WP--ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc--cc--eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 455666554 42 2357889999999999999764321 1111 112234 57888996444 5667776665
Q ss_pred c-CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc--ccccCCCceeEE
Q 000903 356 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (1232)
Q Consensus 356 ~-p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d--~~~l~~i~w~~v 432 (1232)
. -.+..++++|...-...+.+. ..+.+++|.|+..+... ...+.--..-||
T Consensus 318 syng~ksvc~ygggnR~eqie~l--------------------------krgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL--------------------------KRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH--------------------------hcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 4 345556666554433333332 13678999999888653 222322345689
Q ss_pred EEcCcccccCc--ccHHHHHHHhcccccEEEE-ecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000903 433 IVDEGHRLKNK--DSKLFSSLKQYSTRHRVLL-TGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1232)
Q Consensus 433 IvDEaHrlKn~--~S~~~~~l~~l~~~~rllL-TGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~ 509 (1232)
|+|||.++... .-++.+.|..++..+...| |||- .
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW-P----------------------------------------- 409 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW-P----------------------------------------- 409 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccC-c-----------------------------------------
Confidence 99999999764 4678888888887766555 4552 1
Q ss_pred HhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCC
Q 000903 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1232)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~ 589 (1232)
.-+||+....++ ...+|+|.--.. ++.|. +
T Consensus 410 -----~~VrrLa~sY~K-----ep~~v~vGsLdL-----------------------------------~a~~s-----V 439 (629)
T KOG0336|consen 410 -----EGVRRLAQSYLK-----EPMIVYVGSLDL-----------------------------------VAVKS-----V 439 (629)
T ss_pred -----hHHHHHHHHhhh-----CceEEEecccce-----------------------------------eeeee-----e
Confidence 111222111111 112222221000 00000 0
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHH
Q 000903 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1232)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~ 669 (1232)
...+ .+-..+.|+..+..++..+ ....|||||+....++|-|..-|...|+...-|+|.-.+.+|+.+++.
T Consensus 440 kQ~i--------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~ 510 (629)
T KOG0336|consen 440 KQNI--------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALED 510 (629)
T ss_pred eeeE--------EecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHh
Confidence 0000 0001234554444444443 457899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 670 Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
|. ++.+.+|++|+.++.||++++..+|+.||.|-|-..|.+++||.+|.|.+-.- .-|++.+
T Consensus 511 ~k---sG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s--is~lt~~ 572 (629)
T KOG0336|consen 511 FK---SGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS--ISFLTRN 572 (629)
T ss_pred hh---cCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce--EEEEehh
Confidence 95 56677999999999999999999999999999999999999999999976432 2355554
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.55 E-value=4.4e-12 Score=138.89 Aligned_cols=317 Identities=18% Similarity=0.194 Sum_probs=211.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC-CccHHHHHHHHHHHcCC
Q 000903 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQ 358 (1232)
Q Consensus 280 ~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P-~sll~qW~~E~~~~~p~ 358 (1232)
..++|+|.|+|..+.+-|...+.+....|+-.-+|.|||-+....+...++.+ +.+.|..| ..++..-...+..-+++
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhcc
Confidence 34679999999999999999999999999999999999998887777766664 58999999 46777777778888888
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcc
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaH 438 (1232)
..+..++|..++.- -..=||-||++.++- +-.||++||||+.
T Consensus 171 ~~I~~Lyg~S~~~f--------------------------------r~plvVaTtHQLlrF------k~aFD~liIDEVD 212 (441)
T COG4098 171 CDIDLLYGDSDSYF--------------------------------RAPLVVATTHQLLRF------KQAFDLLIIDEVD 212 (441)
T ss_pred CCeeeEecCCchhc--------------------------------cccEEEEehHHHHHH------HhhccEEEEeccc
Confidence 88999998876421 012256666666542 2257999999999
Q ss_pred cccC-cccHHHHHHHhcc--cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh-
Q 000903 439 RLKN-KDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP- 514 (1232)
Q Consensus 439 rlKn-~~S~~~~~l~~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p- 514 (1232)
.+-= .+-.+..+++.-. ....+.|||||-. +|- . +-++.-+.+
T Consensus 213 AFP~~~d~~L~~Av~~ark~~g~~IylTATp~k----~l~------------------r-----------~~~~g~~~~~ 259 (441)
T COG4098 213 AFPFSDDQSLQYAVKKARKKEGATIYLTATPTK----KLE------------------R-----------KILKGNLRIL 259 (441)
T ss_pred cccccCCHHHHHHHHHhhcccCceEEEecCChH----HHH------------------H-----------HhhhCCeeEe
Confidence 8742 2334445555443 3468999999920 000 0 000000100
Q ss_pred hhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000903 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1232)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~ 594 (1232)
.+-+|... +.||-.....+ . .. .+.+
T Consensus 260 klp~RfH~---~pLpvPkf~w~--~--~~--------------------------~k~l--------------------- 285 (441)
T COG4098 260 KLPARFHG---KPLPVPKFVWI--G--NW--------------------------NKKL--------------------- 285 (441)
T ss_pred ecchhhcC---CCCCCCceEEe--c--cH--------------------------HHHh---------------------
Confidence 01111111 12221111111 1 00 0000
Q ss_pred cchHHHHHHHhhhhHHH-HHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCC-CCHHHHHHHHHHHhc
Q 000903 595 DTNESFKQLLESSGKLQ-LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNA 672 (1232)
Q Consensus 595 ~~~~~~~~li~~S~Kl~-~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~-~~~~eRq~~i~~Fn~ 672 (1232)
.-+|+. .|...|++-...|..+|||...+.+++-+...|+. ++++..+..- .....|.+.+..|.+
T Consensus 286 -----------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs~d~~R~EkV~~fR~ 353 (441)
T COG4098 286 -----------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHSEDQHRKEKVEAFRD 353 (441)
T ss_pred -----------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeeccCccHHHHHHHHHc
Confidence 011222 35667777788899999999999999999999853 3455443322 123578999999976
Q ss_pred CCCCceEEEeeccccccccccCCCCEEEEEcCC--CChhhHHHHHHhhhhcCCCCceEEEEEeeCCc
Q 000903 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD--WNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1232)
Q Consensus 673 ~~s~~~v~LlsTragg~GINL~~ad~VIi~D~d--WNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1232)
+.+-+|++|..+..|++++..|++|+=.-. ++-+..+|.-||++|--....-.|+.|-.--|
T Consensus 354 ---G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 354 ---GKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred ---CceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 445699999999999999999999886554 88999999999999976655555555554433
No 97
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.55 E-value=4.5e-13 Score=176.22 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=91.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCC--c
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM--N 360 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~--~ 360 (1232)
..+.|+|..++..+ ..|.+.++...+|+|||.-++.++..+... ...+|||+|. .+..|+...|..++... .
T Consensus 77 ~~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 77 SEPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLAKK-GKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 45788999987655 578899999999999998665555444333 3479999996 56689999999988543 2
Q ss_pred E---EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCc
Q 000903 361 V---VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1232)
Q Consensus 361 v---v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEa 437 (1232)
+ ..|+|...........+- .....++|+|+|+..+......+.. .+++||||||
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~----------------------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMER----------------------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 2 246676433221111000 0113589999999999876555554 7899999999
Q ss_pred ccccC
Q 000903 438 HRLKN 442 (1232)
Q Consensus 438 HrlKn 442 (1232)
|++-.
T Consensus 209 D~~L~ 213 (1171)
T TIGR01054 209 DALLK 213 (1171)
T ss_pred Hhhhh
Confidence 99855
No 98
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.54 E-value=3.6e-13 Score=171.27 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=92.0
Q ss_pred cCceEEEEecchhHHHHHHHHHhh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEE
Q 000903 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1232)
Q Consensus 623 ~g~KvLIFsq~~~~ldiL~~~L~~---~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~V 699 (1232)
.+..+|||++.....+.+.+.|.. .++.+..++|+++.++|.++++.|.. +...+||+|..++.||+++.+++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~---G~rkVlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ---GRRKVVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc---CCeEEEEecchHhhcccccCceEE
Confidence 356899999999999999998876 47899999999999999999999954 344589999999999999999999
Q ss_pred EEEcCC----CChhh--------------HHHHHHhhhhcCCCCceEEEEEeeCCc
Q 000903 700 IIYDSD----WNPHA--------------DLQAMARAHRLGQTNKVMIFRLITRGS 737 (1232)
Q Consensus 700 Ii~D~d----WNp~~--------------~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1232)
|.++.. +||.. ..||.||++|. ++-.+|+|+++..
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 998864 55654 67888888886 5778899998753
No 99
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.54 E-value=2e-14 Score=154.97 Aligned_cols=309 Identities=19% Similarity=0.237 Sum_probs=201.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhhCCC-CCeEEEeCCccH----HHHHHHHHHHcCCC
Q 000903 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERI-SPHLVVAPLSTL----RNWEREFATWAPQM 359 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqai-a~l~~l~~~~~-~p~LIV~P~sll----~qW~~E~~~~~p~~ 359 (1232)
..|.|.+++--. -.|++.+.-.--|+|||-..+ -.+..+-.... --.+|+||..-+ +|-..++.++. ++
T Consensus 108 PSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i 182 (459)
T KOG0326|consen 108 PSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GI 182 (459)
T ss_pred CCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-Ce
Confidence 445555554221 234444445567999997643 33333222221 267999996433 67788888887 58
Q ss_pred cEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc--ccCCCceeEEEEcCc
Q 000903 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEG 437 (1232)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~--~l~~i~w~~vIvDEa 437 (1232)
.|.+-+|....|..|... ....|++|.|+..+..-.. .-.--+..++|+|||
T Consensus 183 ~vmvttGGT~lrDDI~Rl--------------------------~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMRL--------------------------NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEEecCCcccccceeee--------------------------cCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 888888887766543221 2357899999988754211 111124568999999
Q ss_pred ccccCccc--HHHHHHHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000903 438 HRLKNKDS--KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1232)
Q Consensus 438 HrlKn~~S--~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1232)
..+-+..- .+-+.+.-+. .+..+|.|||-- . ....
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP-~------------------tVk~----------------------- 274 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFP-L------------------TVKG----------------------- 274 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccc-h------------------hHHH-----------------------
Confidence 98866432 2333333343 344566777720 0 0111
Q ss_pred hhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000903 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1232)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~ 594 (1232)
||-|.+++- -++.+.-+|+..
T Consensus 275 Fm~~~l~kP--------y~INLM~eLtl~--------------------------------------------------- 295 (459)
T KOG0326|consen 275 FMDRHLKKP--------YEINLMEELTLK--------------------------------------------------- 295 (459)
T ss_pred HHHHhccCc--------ceeehhhhhhhc---------------------------------------------------
Confidence 121111110 011111111110
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 000903 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1232)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~ 674 (1232)
.-..+-..++.+.|+..|.-|+.+|. -...||||+.+..+++|+..+...||+...++..|..+.|..+..+|.++.
T Consensus 296 -GvtQyYafV~e~qKvhCLntLfskLq--INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~ 372 (459)
T KOG0326|consen 296 -GVTQYYAFVEERQKVHCLNTLFSKLQ--INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK 372 (459)
T ss_pred -chhhheeeechhhhhhhHHHHHHHhc--ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc
Confidence 00112234556778888888888874 347999999999999999999999999999999999999999999997644
Q ss_pred CCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEee
Q 000903 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1232)
Q Consensus 675 s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt 734 (1232)
. ..|++|+..-.||++++.+.||.||.+-|+..+++++||.+|.|--- .-..|||
T Consensus 373 c---rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLit 427 (459)
T KOG0326|consen 373 C---RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLIT 427 (459)
T ss_pred c---ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEe
Confidence 3 47999999999999999999999999999999999999999999542 2234554
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=6.1e-13 Score=165.06 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|...|.+.+......|..|||||.++...+.|...|...|+++..++|.....+++.+...+. ++ .++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~---~g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQ---RG--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCC---Cc--eEEEEec
Confidence 356888999999888889999999999999999999999999999999999987655555554443 33 3799999
Q ss_pred ccccccccC---CCC-----EEEEEcCCCChhhHHHHHHhhhhcCCCCceE
Q 000903 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 686 agg~GINL~---~ad-----~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
.+|+|+++. .+. +||.++.+-|...+.|+.||++|.|..-...
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999995 566 9999999999999999999999999876654
No 101
>PRK14701 reverse gyrase; Provisional
Probab=99.53 E-value=6.6e-13 Score=177.92 Aligned_cols=336 Identities=15% Similarity=0.221 Sum_probs=186.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcC----C
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP----Q 358 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p----~ 358 (1232)
.++++.|..++..+ ..+.+.++..+||+|||+..+.++..+ .......|||+|+ .++.|....|..++. +
T Consensus 78 ~~pt~iQ~~~i~~i----l~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 78 FEFWSIQKTWAKRI----LRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 35789999998666 567899999999999998433222222 2222379999996 666889999988764 3
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcc
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaH 438 (1232)
.++..++|...........+- .....++|+|+|++.+......+....+++|||||||
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~----------------------l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD 210 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLER----------------------IENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVD 210 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECce
Confidence 566777777554322111100 0123588999999988654443333568899999999
Q ss_pred cccCcccHHHHHHHhcccccEEEEecCCCCCCHH-HHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhhhhh
Q 000903 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLD-ELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~-EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~l 517 (1232)
++-..+-..-+.|. |-|- ...+. ..+.++.. ....+. ....+.+..|...+.
T Consensus 211 ~ml~~~knid~~L~---------llGF--~~e~~~~~~~il~~---~~~~~~---------~~~~~~~~~l~~~~~---- 263 (1638)
T PRK14701 211 AFLKASKNIDRSLQ---------LLGF--YEEIIEKAWKIIYL---KKQGNI---------EDAMEKREILNKEIE---- 263 (1638)
T ss_pred eccccccccchhhh---------cCCC--hHHHHHHHHHhhhc---cccccc---------chhhhhhhhhhhhhh----
Confidence 98532100000110 0110 00000 01111111 000000 000122333333221
Q ss_pred hhhhhhHhhcCCCcEEEE--EeccCCHHHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000903 518 RRVKKDVMKELPPKKELI--LRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1232)
Q Consensus 518 RR~k~dv~~~LP~k~e~~--v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~-~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~ 594 (1232)
.+|...... ....+++.... ..++.. .+.-..+ .... ++.+ .|.|+.
T Consensus 264 ---------~~~~~~~~ll~~SAT~~~r~~~--~~l~~~---~l~f~v~~~~~~-------lr~i-~~~yi~-------- 313 (1638)
T PRK14701 264 ---------KIGNKIGCLIVASATGKAKGDR--VKLYRE---LLGFEVGSGRSA-------LRNI-VDVYLN-------- 313 (1638)
T ss_pred ---------hcCCCccEEEEEecCCCchhHH--HHHhhc---CeEEEecCCCCC-------CCCc-EEEEEE--------
Confidence 123322222 23333331100 011100 0000000 0000 0000 011100
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhH---HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 000903 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1232)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~---ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn 671 (1232)
.....| ..|..++..+ |..+|||++.... ++.|..+|...|+++..++|. |..++++|.
T Consensus 314 ---------~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~ 375 (1638)
T PRK14701 314 ---------PEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFE 375 (1638)
T ss_pred ---------CCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHH
Confidence 001112 3445555443 6789999997664 589999999999999999984 899999998
Q ss_pred cCCCCceEEEeecc----ccccccccCC-CCEEEEEcCCC---ChhhHHH-------------HHHhhhhcCCC
Q 000903 672 AKNSSRFCFLLSTR----AGGLGINLAT-ADTVIIYDSDW---NPHADLQ-------------AMARAHRLGQT 724 (1232)
Q Consensus 672 ~~~s~~~v~LlsTr----agg~GINL~~-ad~VIi~D~dW---Np~~~~Q-------------a~gR~hRiGQ~ 724 (1232)
++... +|++|. .+++|||++. ...||+||.|- |...+.| ..||++|-|..
T Consensus 376 ~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 376 EGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred cCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 76554 888884 6889999998 99999999987 5554444 45999988854
No 102
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.53 E-value=7.5e-15 Score=144.01 Aligned_cols=88 Identities=34% Similarity=0.618 Sum_probs=79.0
Q ss_pred CCCcCHHHHHHHHHHHHhhhhhhHHHhhcCccCCchHHhhHhhCCCCCcCCCCCCCCCCCCCCCCCCchhhhhcCCCCCC
Q 000903 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASSQAPNGANSANPEALQMQGNSTGN 1160 (1232)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1160 (1232)
..+|...||+|||.||..||||+|+.|.+||++.| +|-||.+....+
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~I-------iNEPFk~e~~kg-------------------------- 49 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAI-------INEPFKTESQKG-------------------------- 49 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceee-------eccccccccccc--------------------------
Confidence 46899999999999999999999999999999999 888887644333
Q ss_pred CcccccccCCCccchhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhccccccccCCC
Q 000903 1161 DSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFVSQSNLEKPLF 1231 (1232)
Q Consensus 1161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1231 (1232)
+|.+|++| ||.+|++|||++|.+|.|++..++.+....|..
T Consensus 50 ---------------------------nfle~KNk---FLaRRfKLLEQaLvIEEqLrRAa~lnl~~~p~~ 90 (173)
T PF08074_consen 50 ---------------------------NFLEMKNK---FLARRFKLLEQALVIEEQLRRAAYLNLSQDPSH 90 (173)
T ss_pred ---------------------------chHHHHHH---HHHHHHHHHHHHHhhhccccchhhccCcCCCCC
Confidence 68899999 999999999999999999999999988887753
No 103
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=1.1e-12 Score=163.52 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=105.1
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|+..|.+.+..+...|..|||||..+...+.|...|...|+++..++|. ..+|.+.|..|.... ..++|+|.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~---g~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRP---GAVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCC---ceEEEecc
Confidence 4568999999999988999999999999999999999999999999999995 678999999995433 35899999
Q ss_pred ccccccccCCC--------------------------------------CEEEEEcCCCChhhHHHHHHhhhhcCCCCce
Q 000903 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1232)
Q Consensus 686 agg~GINL~~a--------------------------------------d~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V 727 (1232)
.+|.|+|+.-. =+||.-..+=|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 99999998643 2788888899999999999999999988766
Q ss_pred EEE
Q 000903 728 MIF 730 (1232)
Q Consensus 728 ~Vy 730 (1232)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 544
No 104
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.53 E-value=5.9e-13 Score=167.75 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=109.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHc-CCCcEE
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNVV 362 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~-p~~~vv 362 (1232)
+|.|.|.++|--. ...+.|+|++..||.|||+.|..++.....++.++++.|||. ++..+=.++|.+|. -+++|.
T Consensus 31 el~~~qq~av~~~---~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKG---LLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhcc---ccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 7999999998433 233899999999999999999777776666656799999995 67778888888443 379999
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccc--cCCCceeEEEEcCcccc
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRL 440 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~--l~~i~w~~vIvDEaHrl 440 (1232)
+++|+.+... ....+++|+|||||.+-.-... .--...++|||||+|-+
T Consensus 108 ~~TgD~~~~~-----------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 108 ISTGDYDLDD-----------------------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred EecCCcccch-----------------------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 9999876432 1235789999999998532111 11225689999999999
Q ss_pred cCc-ccH----HHHHHHhccc-ccEEEEecCCCCCCHHHHHH
Q 000903 441 KNK-DSK----LFSSLKQYST-RHRVLLTGTPLQNNLDELFM 476 (1232)
Q Consensus 441 Kn~-~S~----~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~ 476 (1232)
... ... +..-+..+.. -..++||||- .|..|+..
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~ 198 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVAD 198 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHH
Confidence 765 211 1111222222 3568999994 34444443
No 105
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.51 E-value=5.6e-13 Score=153.07 Aligned_cols=127 Identities=17% Similarity=0.245 Sum_probs=106.4
Q ss_pred ceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcC
Q 000903 625 HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS 704 (1232)
Q Consensus 625 ~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~ 704 (1232)
.|.||||+.++.+..|.-+|...+++..-++.+|.+.+|-+.+++|....++ +||+|++++.||+++.+++||+|.-
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhhccCCCCCcceEEEeec
Confidence 4899999999999999999999999999999999999999999999886665 8999999999999999999999999
Q ss_pred CCChhhHHHHHHhhhhcCCCCceEEEEEeeCC---------------------cHHHHHHHHHHHHHHHHHHH
Q 000903 705 DWNPHADLQAMARAHRLGQTNKVMIFRLITRG---------------------SIEERMMQMTKKKMVLEHLV 756 (1232)
Q Consensus 705 dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~---------------------TvEE~i~~~~~~K~~l~~~v 756 (1232)
|-....|++|-||..|.+..- |.| .|+... .|++.|+...+.+-.|++.+
T Consensus 541 PrtseiYVHRSGRTARA~~~G-vsv-ml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei 611 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSEG-VSV-MLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREI 611 (731)
T ss_pred CCccceeEecccccccccCCC-eEE-EEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHH
Confidence 999999999999999977432 222 122211 34666666666666666555
No 106
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=1.2e-12 Score=162.57 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|...+.+-+..+.+.|..|||||..+...+.|..+|...|+++..+++..+..+|..+.+.|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 467888888889999999999999999999999999999999999999999999999999999986532 799999
Q ss_pred ccccccccCCC-------------------------------------CEEEEEcCCCChhhHHHHHHhhhhcCCCCceE
Q 000903 686 AGGLGINLATA-------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 686 agg~GINL~~a-------------------------------------d~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
.+|.|+|+.=. =+||.-...-|-..|.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 99999997622 27898899999999999999999999876554
Q ss_pred E
Q 000903 729 I 729 (1232)
Q Consensus 729 V 729 (1232)
.
T Consensus 586 f 586 (908)
T PRK13107 586 F 586 (908)
T ss_pred E
Confidence 3
No 107
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.48 E-value=1.9e-12 Score=165.10 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=91.9
Q ss_pred cCceEEEEecchhHHHHHHHHHhh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEE
Q 000903 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1232)
Q Consensus 623 ~g~KvLIFsq~~~~ldiL~~~L~~---~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~V 699 (1232)
.+..+|||.+.....+.+.+.|.. .++.+..++|+++..+|+.++..|.. +...+|++|..+..||+++.+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA---GRRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC---CCeEEEEecchHHhcccccCceEE
Confidence 457899999999999999999976 57889999999999999999988853 445689999999999999999999
Q ss_pred EEEcCC----CChh--------------hHHHHHHhhhhcCCCCceEEEEEeeCCcHH
Q 000903 700 IIYDSD----WNPH--------------ADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1232)
Q Consensus 700 Ii~D~d----WNp~--------------~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1232)
|.++.. |+|. ...||.||++|. .+-.+|+|+++...+
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE 342 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh
Confidence 996654 3333 467777777776 588999999876543
No 108
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.48 E-value=6e-14 Score=127.53 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=73.9
Q ss_pred HHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhc
Q 000903 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1232)
Q Consensus 642 ~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRi 721 (1232)
.+|+..|+++..++|.++..+|+.+++.|+.... .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688899999999999999999999999998666 4899999999999999999999999999999999999999998
Q ss_pred C
Q 000903 722 G 722 (1232)
Q Consensus 722 G 722 (1232)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 109
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.46 E-value=1.3e-11 Score=155.51 Aligned_cols=324 Identities=16% Similarity=0.206 Sum_probs=212.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCc--eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHH-HHHHHHHHHcCCCc
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTH--VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQMN 360 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~--~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~-qW~~E~~~~~p~~~ 360 (1232)
.+--|-|+.+++-+..=+.++.- =+||-++|.|||=.|+=.+-.-... .+-+.|+||+.+|. |-.+.|..=+.++.
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-GKQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-GKQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 46778999999988766665553 5899999999998874332221122 25789999998884 44555554343554
Q ss_pred EEE-----EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEc
Q 000903 361 VVM-----YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1232)
Q Consensus 361 vv~-----~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvD 435 (1232)
|-+ +.+.+..+..+... ..++.||||-|+..+.++..+- +-.+||||
T Consensus 672 V~I~~LSRF~s~kE~~~il~~l-------------------------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIID 723 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGL-------------------------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIID 723 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHH-------------------------hcCCccEEEechHhhCCCcEEe---cCCeEEEe
Confidence 443 22333333333321 2368899999999998765432 33699999
Q ss_pred CcccccCcccHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000903 436 EGHRLKNKDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1232)
Q Consensus 436 EaHrlKn~~S~~~~~l~~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1232)
|=||+.= +.-..|++++++ +.|-|||||++-.+.= -.. .+
T Consensus 724 EEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~M-------sm~-----------------------Gi------ 764 (1139)
T COG1197 724 EEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLNM-------SLS-----------------------GI------ 764 (1139)
T ss_pred chhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHHH-------HHh-----------------------cc------
Confidence 9999843 334567777654 7899999998665310 000 00
Q ss_pred hhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000903 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1232)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~ 594 (1232)
+.-..-.-||.....|.--..+..-...
T Consensus 765 ------RdlSvI~TPP~~R~pV~T~V~~~d~~~i---------------------------------------------- 792 (1139)
T COG1197 765 ------RDLSVIATPPEDRLPVKTFVSEYDDLLI---------------------------------------------- 792 (1139)
T ss_pred ------hhhhhccCCCCCCcceEEEEecCChHHH----------------------------------------------
Confidence 0000113566555554433322111110
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhC--CCcEEEEeCCCCHHHHHHHHHHHhc
Q 000903 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1232)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~eRq~~i~~Fn~ 672 (1232)
=..+++++ .+|..|-...+.+..+.-+...|+.. ..++...+|.|+..+-+.++..|.+
T Consensus 793 ------------------reAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 793 ------------------REAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred ------------------HHHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 01123333 34667777777788888888887653 5578999999999999999999987
Q ss_pred CCCCceEEEeeccccccccccCCCCEEEEEcCC-CChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHHHHH
Q 000903 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 751 (1232)
Q Consensus 673 ~~s~~~v~LlsTragg~GINL~~ad~VIi~D~d-WNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~K~~ 751 (1232)
+..+ +||||.....|||++.|||+|+-+.| +--++.-|--||++|- ++..+.|-|+-.+ ..+-+.+.+++.
T Consensus 854 g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~~---k~lT~~A~kRL~ 925 (1139)
T COG1197 854 GEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPPQ---KALTEDAEKRLE 925 (1139)
T ss_pred CCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecCc---cccCHHHHHHHH
Confidence 6554 99999999999999999999999987 6788889999999985 4566777776542 224445555544
Q ss_pred HHH
Q 000903 752 LEH 754 (1232)
Q Consensus 752 l~~ 754 (1232)
..+
T Consensus 926 aI~ 928 (1139)
T COG1197 926 AIA 928 (1139)
T ss_pred HHH
Confidence 433
No 110
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.46 E-value=1.5e-12 Score=150.10 Aligned_cols=314 Identities=20% Similarity=0.275 Sum_probs=206.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCCCCCeEEEeCCccHHH-HHHHHHHHcC--CC
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTLRN-WEREFATWAP--QM 359 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~~p~LIV~P~sll~q-W~~E~~~~~p--~~ 359 (1232)
.+|.|-|.-+|. ...-.|.+-++...+++|||+++ +|-+-.++..+ +.+|.+||+-.+.| =.++|..-.. .+
T Consensus 215 ~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g-~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG-KKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcHHHHhCC-CeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 469999999874 23468999999999999999987 66666655543 58999999876654 4566654332 24
Q ss_pred cEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc---ccccCCCceeEEEEcC
Q 000903 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCMIVDE 436 (1232)
Q Consensus 360 ~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d---~~~l~~i~w~~vIvDE 436 (1232)
.+.+-.|...-+ ..+ . . ..-....+.||+|-||+-+.-. ...+. +...|||||
T Consensus 291 kvairVG~srIk----~~~---------------~-p--v~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDE 346 (830)
T COG1202 291 KVAIRVGMSRIK----TRE---------------E-P--VVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDE 346 (830)
T ss_pred eEEEEechhhhc----ccC---------------C-c--cccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeee
Confidence 444555543221 100 0 0 0112346789999999987432 22333 456899999
Q ss_pred cccccCc--ccHHHHH---HHhcc-cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000903 437 GHRLKNK--DSKLFSS---LKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1232)
Q Consensus 437 aHrlKn~--~S~~~~~---l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~ 510 (1232)
.|.+... .+.+--. |+.+. ....+.||||- .|+.||...|..-
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~----------------------------- 395 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAK----------------------------- 395 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCe-----------------------------
Confidence 9999762 3333333 33332 35678999995 5556655443210
Q ss_pred hhhhhhhhhhhhhHhhcCC-CcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCC
Q 000903 511 MLAPHLLRRVKKDVMKELP-PKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1232)
Q Consensus 511 ~L~p~~lRR~k~dv~~~LP-~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~ 589 (1232)
++.. ..-| |...+.+++.=.
T Consensus 396 -----lV~y------~~RPVplErHlvf~~~e------------------------------------------------ 416 (830)
T COG1202 396 -----LVLY------DERPVPLERHLVFARNE------------------------------------------------ 416 (830)
T ss_pred -----eEee------cCCCCChhHeeeeecCc------------------------------------------------
Confidence 0000 0001 222333333211
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHH----HcC--ceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHH
Q 000903 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLK----EQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (1232)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~----~~g--~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eR 663 (1232)
+.|..++.+|.+.-. ..| ..+|||+...+-...|.++|..+|++..-+++.++-.+|
T Consensus 417 -----------------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eR 479 (830)
T COG1202 417 -----------------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKER 479 (830)
T ss_pred -----------------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHH
Confidence 112222222222111 112 369999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEE----EcCCC-ChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDSDW-NPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 664 q~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi----~D~dW-Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
+.+-..|.+.. ...+++|.|.|-|+|+++. .||| +-.+| +|+.+.|..|||+|.+=...-.||-++-.|
T Consensus 480 k~vE~~F~~q~---l~~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 480 KSVERAFAAQE---LAAVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHhcCC---cceEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999997644 4488999999999999964 4443 44455 999999999999999998888888888655
No 111
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.44 E-value=8.3e-11 Score=147.05 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccc
Q 000903 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1232)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTra 686 (1232)
.+++..|.+-|......|.+||||+.....++.|.++|...|+++..++|.++..+|.+++..|.. +.+.+|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~---G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL---GEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc---CCceEEEEcCh
Confidence 467777777777778889999999999999999999999999999999999999999999999965 34568999999
Q ss_pred cccccccCCCCEEEEEc-----CCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCc--HHHHHHHH
Q 000903 687 GGLGINLATADTVIIYD-----SDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS--IEERMMQM 745 (1232)
Q Consensus 687 gg~GINL~~ad~VIi~D-----~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T--vEE~i~~~ 745 (1232)
+++|++++.+++||++| .+-+...++|++||++|.. . -.++.|+...| +...|.+.
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999999999 4558889999999999974 2 33455555443 44444443
No 112
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=2.9e-12 Score=149.77 Aligned_cols=122 Identities=23% Similarity=0.329 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHH-hhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L-~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
-+|+..+..++.... .-.+|||.|...-...|-..| ...++.+..|+|..+..+|...+++|.. +.+-+|++|.
T Consensus 372 ~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~---g~IwvLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI---GKIWVLICTD 446 (593)
T ss_pred hhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc---cCeeEEEehh
Confidence 467777777776542 358999999999999999999 7889999999999999999999999976 3445899999
Q ss_pred ccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000903 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1232)
Q Consensus 686 agg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1232)
..+.||++..++.||+||.+-.-..++.++||.+|-|+.-.. |-|.|.
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A--itfytd 494 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA--ITFYTD 494 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce--EEEecc
Confidence 999999999999999999999999999999999999987433 334444
No 113
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.42 E-value=2.5e-12 Score=136.86 Aligned_cols=156 Identities=28% Similarity=0.349 Sum_probs=110.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC-CceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeC-CccHHHHHHHHHHHcCCC
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~-~~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P-~sll~qW~~E~~~~~p~~ 359 (1232)
..+++|+|.+++..+. .. .++++..++|+|||..++.++....... ..++||++| .++..+|..++..+.+..
T Consensus 6 ~~~~~~~Q~~~~~~~~----~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALL----SGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3679999999998873 34 8899999999999998777776665543 469999999 567789999999988653
Q ss_pred ---cEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccc--cCCCceeEEEE
Q 000903 360 ---NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIV 434 (1232)
Q Consensus 360 ---~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~--l~~i~w~~vIv 434 (1232)
....+.+... ...+... .....+++++|++.+...... +....++++|+
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 82 GLKVVGLYGGDSK-REQLRKL-------------------------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred CeEEEEEeCCcch-HHHHHHH-------------------------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEE
Confidence 3334444332 2211111 012238999999988775544 44557889999
Q ss_pred cCcccccC-cccH-HHHHHHhc-ccccEEEEecCCCC
Q 000903 435 DEGHRLKN-KDSK-LFSSLKQY-STRHRVLLTGTPLQ 468 (1232)
Q Consensus 435 DEaHrlKn-~~S~-~~~~l~~l-~~~~rllLTGTPlq 468 (1232)
||+|.+.+ .... ....+..+ ...+++++||||.+
T Consensus 136 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 136 DEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred ECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 99999985 3333 33344444 46788999999963
No 114
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.42 E-value=4.1e-12 Score=157.19 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccc
Q 000903 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1232)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTra 686 (1232)
+.|+.-|..||....+ .-++|||++-..-+|.|.+-|...||....++|..+..+|...|..|.+... .+|++|..
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~---~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV---NLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc---eEEEehhh
Confidence 4577778888877766 5699999999999999999999999999999999999999999999976544 59999999
Q ss_pred cccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000903 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1232)
Q Consensus 687 gg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1232)
.+.||+......||+||.+--...+..|.||++|.|.+- .-|-|++.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999888888999999999988776 55566666
No 115
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.40 E-value=3.8e-12 Score=143.06 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=111.5
Q ss_pred HhCCcccccCCCCCcccchHHHHH--HHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeC
Q 000903 579 LCCHPYMLEGVEPDIEDTNESFKQ--LLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDG 656 (1232)
Q Consensus 579 ~c~hP~L~~~~e~~~~~~~~~~~~--li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG 656 (1232)
+|..|..+.-.+++...++.-... ....-.|+.++..|++--.= ..|.|||.+.++..-.|.=+|+.-|++.|.+.|
T Consensus 222 ~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNs 300 (569)
T KOG0346|consen 222 FLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNS 300 (569)
T ss_pred hccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcc
Confidence 455677665444444322211111 12234577777777754333 349999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCceEEEeecc--------------------------c---------cccccccCCCCEEEE
Q 000903 657 KVGGAERQIRIDRFNAKNSSRFCFLLSTR--------------------------A---------GGLGINLATADTVII 701 (1232)
Q Consensus 657 ~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr--------------------------a---------gg~GINL~~ad~VIi 701 (1232)
.++...|.-+|++||.+- +-++|+|+ + .+.|||++.+++||+
T Consensus 301 eLP~NSR~Hii~QFNkG~---YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN 377 (569)
T KOG0346|consen 301 ELPANSRCHIIEQFNKGL---YDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN 377 (569)
T ss_pred cccccchhhHHHHhhCcc---eeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee
Confidence 999999999999998743 44777777 1 257999999999999
Q ss_pred EcCCCChhhHHHHHHhhhhcCCCCceEE
Q 000903 702 YDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1232)
Q Consensus 702 ~D~dWNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1232)
||.|-++..|++|+||..|-|.+-.+.-
T Consensus 378 FD~P~t~~sYIHRvGRTaRg~n~GtalS 405 (569)
T KOG0346|consen 378 FDFPETVTSYIHRVGRTARGNNKGTALS 405 (569)
T ss_pred cCCCCchHHHHHhccccccCCCCCceEE
Confidence 9999999999999999999887665554
No 116
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.38 E-value=3.6e-12 Score=127.59 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=99.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhC-CCCCeEEEeCCccHH-HHHHHHHHHcC-CCcEEEEEcChhHHHHHHHhhhcC
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWEREFATWAP-QMNVVMYVGTSQARNIIREYEFYF 381 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~-~~~p~LIV~P~sll~-qW~~E~~~~~p-~~~vv~~~g~~~~r~~i~~~e~~~ 381 (1232)
.++++..++|+|||.+++.++..+... ..+++||+||...+. +|...+..+.. ...+.++++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 368999999999999999999988765 446999999987665 55667777774 4667777766544332211
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHhhccccc--CCCceeEEEEcCcccccCcccHHH---HHHHhccc
Q 000903 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYST 456 (1232)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l--~~i~w~~vIvDEaHrlKn~~S~~~---~~l~~l~~ 456 (1232)
.....+++++||+.+....... ....|++||+||+|.+.+...... ........
T Consensus 76 ---------------------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~ 134 (144)
T cd00046 76 ---------------------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD 134 (144)
T ss_pred ---------------------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCcc
Confidence 1246789999999887654332 344789999999999988765553 33444567
Q ss_pred ccEEEEecCC
Q 000903 457 RHRVLLTGTP 466 (1232)
Q Consensus 457 ~~rllLTGTP 466 (1232)
..++++||||
T Consensus 135 ~~~i~~saTp 144 (144)
T cd00046 135 RQVLLLSATP 144 (144)
T ss_pred ceEEEEeccC
Confidence 7899999998
No 117
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.37 E-value=5.4e-10 Score=140.78 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccc
Q 000903 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1232)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTra 686 (1232)
.+++..|...|......|.+||||+.....++.|.++|...|+++..++|.++..+|..++..|..+ .+.+|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g---~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG---EFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC---CceEEEEeCH
Confidence 4567777777877788899999999999999999999999999999999999999999999999653 3568999999
Q ss_pred cccccccCCCCEEEEEcCC-----CChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000903 687 GGLGINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1232)
Q Consensus 687 gg~GINL~~ad~VIi~D~d-----WNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~ 735 (1232)
++.|++++.+++||++|.+ -++..++|++||++|- . .-.++.|++.
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999974 5889999999999994 2 3345566654
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=8.9e-11 Score=146.63 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|+..|.+.+..+...|..|||||+++...+.|..+|...|+++..|++ ...+|++.|-.|.... ..++|+|.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~---g~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQK---GAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCC---CeEEEecc
Confidence 456999999999999899999999999999999999999999999999997 5778999999995433 35899999
Q ss_pred ccccccccCCCC--------EEEEEcCCCChhhHHHHHHhhhhcCCCCceE
Q 000903 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 686 agg~GINL~~ad--------~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
.+|.|+++.-.+ +||.++.+-+...+.|++||++|.|..-...
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 999999998444 4488899999999999999999999876553
No 119
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.35 E-value=1.7e-11 Score=155.67 Aligned_cols=313 Identities=15% Similarity=0.146 Sum_probs=214.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC-CCCCeEEEeCC-ccHHHHHHHHHHHcCCCcE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAPQMNV 361 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~-~~~p~LIV~P~-sll~qW~~E~~~~~p~~~v 361 (1232)
...||-|.++|+-+ ..|..+++-..+|-||++.- .|-.- ..+-+|||.|+ ||+.-...-+.. .++..
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCY-----QlPA~l~~gitvVISPL~SLm~DQv~~L~~--~~I~a 331 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCY-----QLPALLLGGVTVVISPLISLMQDQVTHLSK--KGIPA 331 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEe-----eccccccCCceEEeccHHHHHHHHHHhhhh--cCcce
Confidence 46999999999743 68899999999999999753 11110 12368999995 676555555522 36777
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccC---CC----ceeEEEE
Q 000903 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLK---PI----KWQCMIV 434 (1232)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~---~i----~w~~vIv 434 (1232)
..+.+..........+.... ......+++..|+|.+......+. .. .-.++||
T Consensus 332 ~~L~s~q~~~~~~~i~q~l~--------------------~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 332 CFLSSIQTAAERLAILQKLA--------------------NGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI 391 (941)
T ss_pred eeccccccHHHHHHHHHHHh--------------------CCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEe
Confidence 77777766654333322111 122467899999999976533221 11 2578999
Q ss_pred cCcccccCcc-------cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000903 435 DEGHRLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1232)
Q Consensus 435 DEaHrlKn~~-------S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~ 507 (1232)
||||-..... .++......+..--.|.||||--..--.++...|+.-+|..|.+.
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------------------ 453 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------------------ 453 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------------------
Confidence 9999876543 233333333344467899999755555555555555555432211
Q ss_pred HHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCccccc
Q 000903 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1232)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~ 587 (1232)
..++.-.+-|....+ ...+..++...+.
T Consensus 454 -------------------fnR~NL~yeV~~k~~------------------------~~~~~~~~~~~~~--------- 481 (941)
T KOG0351|consen 454 -------------------FNRPNLKYEVSPKTD------------------------KDALLDILEESKL--------- 481 (941)
T ss_pred -------------------CCCCCceEEEEeccC------------------------ccchHHHHHHhhh---------
Confidence 122222333322221 0111112211111
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHH
Q 000903 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1232)
Q Consensus 588 ~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i 667 (1232)
...+...||||....+.+.+...|...|++...++++++..+|+.+-
T Consensus 482 ---------------------------------~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq 528 (941)
T KOG0351|consen 482 ---------------------------------RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQ 528 (941)
T ss_pred ---------------------------------cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHH
Confidence 22466899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEe
Q 000903 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1232)
Q Consensus 668 ~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlv 733 (1232)
..|..+. +.++++|=|.|.|||-+++..||+|..|-+-.-+-|..|||+|-|+...+..|+=.
T Consensus 529 ~~w~~~~---~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~ 591 (941)
T KOG0351|consen 529 KAWMSDK---IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY 591 (941)
T ss_pred HHHhcCC---CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch
Confidence 9998754 56899999999999999999999999999999999999999999999877665533
No 120
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.34 E-value=1.9e-11 Score=138.36 Aligned_cols=216 Identities=25% Similarity=0.302 Sum_probs=133.5
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHHHHHh---cCCc------------chhHHHHHHHHHHHhCCcccc-cCCCCCccc
Q 000903 532 KELILRVELSSKQKEYYKAILTRNYQILTR---RGGA------------QISLINVVMELRKLCCHPYML-EGVEPDIED 595 (1232)
Q Consensus 532 ~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~---~~~~------------~~~l~~il~~Lrk~c~hP~L~-~~~e~~~~~ 595 (1232)
.++.++++|+..|++.|+.++.-.+..+.+ .... ...+...+.+|+.+|+||+|+ +...+....
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 367899999999999999999877665532 1111 123445677899999999986 333343334
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHH-----HHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHH---
Q 000903 596 TNESFKQLLESSGKLQLLDKMMVKL-----KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI--- 667 (1232)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~klL~~l-----~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i--- 667 (1232)
..+....+...|||+.+|..+|..+ ...+.++||.++..+++|+||.+|..+++.|.|++|.....+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 4555678889999999999999999 66688999999999999999999999999999999986554433322
Q ss_pred ---------HHHhcCCC-CceEEEeecccccc----ccccCCCCEEEEEcCCCChhhHHHHHHhh-hhcCCCCceEEEEE
Q 000903 668 ---------DRFNAKNS-SRFCFLLSTRAGGL----GINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRL 732 (1232)
Q Consensus 668 ---------~~Fn~~~s-~~~v~LlsTragg~----GINL~~ad~VIi~D~dWNp~~~~Qa~gR~-hRiGQ~k~V~Vyrl 732 (1232)
.......+ ...++|++|.-... .++-...|.||-||+.+++....-..-|. +|-+ +.+-|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirL 241 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRL 241 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEE
Confidence 11112222 23445555554433 23344679999999999998755444444 4433 88999999
Q ss_pred eeCCcHHHHHHHHHHHH
Q 000903 733 ITRGSIEERMMQMTKKK 749 (1232)
Q Consensus 733 vt~~TvEE~i~~~~~~K 749 (1232)
|..+|+|.-++..-...
T Consensus 242 v~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 242 VPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EETTSHHHHHHHHTTTS
T ss_pred eeCCCHHHHHHHccCcc
Confidence 99999999887766544
No 121
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.33 E-value=2.9e-12 Score=116.64 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=75.6
Q ss_pred HHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhh
Q 000903 639 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (1232)
Q Consensus 639 iL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~ 718 (1232)
.|.++|...++.+..++|+++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999987654 5899999999999999999999999999999999999999
Q ss_pred hhcC
Q 000903 719 HRLG 722 (1232)
Q Consensus 719 hRiG 722 (1232)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 122
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.33 E-value=7.2e-11 Score=153.93 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=88.9
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEE
Q 000903 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1232)
Q Consensus 623 ~g~KvLIFsq~~~~ldiL~~~L~~~g---~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~V 699 (1232)
....+|||......++.+.+.|...+ +.+.-++|+++.++|+.++..+ + . ..+|++|..+..||+++.+++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-C-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4578899999999999885443 2 2 2479999999999999999999
Q ss_pred EEEcCC----C--------------ChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHH
Q 000903 700 IIYDSD----W--------------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1232)
Q Consensus 700 Ii~D~d----W--------------Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE 740 (1232)
|-++.. + +.....||.||++|.| +-.+|+|+++...+.
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 987621 1 3457899999999987 677899998775543
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=4e-10 Score=140.59 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|...+.+-+..+.+.|..|||-+.++..-+.|..+|...|+++..++.... +.-..+|.. ++..+ .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeec
Confidence 457889999999999999999999999999999999999999999999998743 333345543 33333 4799999
Q ss_pred ccccccccCCC--------CEEEEEcCCCChhhHHHHHHhhhhcCCCCceEE
Q 000903 686 AGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1232)
Q Consensus 686 agg~GINL~~a--------d~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~V 729 (1232)
.+|.|.++.-. =+||.-..+-|...+.|..||++|.|..-....
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 99999887633 278888999999999999999999998765554
No 124
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.32 E-value=9.4e-11 Score=143.94 Aligned_cols=309 Identities=18% Similarity=0.256 Sum_probs=179.0
Q ss_pred HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC---------CCCCeEEEeCC-ccH----HHHHHHHHHHcCCCcEEEE
Q 000903 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPL-STL----RNWEREFATWAPQMNVVMY 364 (1232)
Q Consensus 299 ~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~---------~~~p~LIV~P~-sll----~qW~~E~~~~~p~~~vv~~ 364 (1232)
-.|+.+.|+|++..+|.|||..|...+..+..+ ..-+++.|+|. ++. .+|..-|.-| ++.|..+
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~EL 198 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVREL 198 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEe
Confidence 356789999999999999999986666555543 11278999995 443 4566655554 6889999
Q ss_pred EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhh-------cccccCCCceeEEEEcCc
Q 000903 365 VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-------DSASLKPIKWQCMIVDEG 437 (1232)
Q Consensus 365 ~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~-------d~~~l~~i~w~~vIvDEa 437 (1232)
+|+...-+. ...+.+|+|||+|...- +...+. ...+|||||.
T Consensus 199 TGD~ql~~t-----------------------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEV 247 (1230)
T KOG0952|consen 199 TGDTQLTKT-----------------------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEV 247 (1230)
T ss_pred cCcchhhHH-----------------------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeee
Confidence 998753211 12467899999987621 111122 3468999999
Q ss_pred ccccCccc-----HHHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000903 438 HRLKNKDS-----KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1232)
Q Consensus 438 HrlKn~~S-----~~~~~l~~l----~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1232)
|-|..... ...+.++.. +.-+.++||||- -|+.|+ -.||..+.....-.|...|...
T Consensus 248 HlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl--PN~eDv---A~fL~vn~~~glfsFd~~yRPv--------- 313 (1230)
T KOG0952|consen 248 HLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL--PNYEDV---ARFLRVNPYAGLFSFDQRYRPV--------- 313 (1230)
T ss_pred hhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHH---HHHhcCCCccceeeeccccccc---------
Confidence 99977543 333333222 233568999993 234443 3445444433333343333210
Q ss_pred HHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCC--HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccc
Q 000903 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELS--SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1232)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls--~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~ 586 (1232)
|.....+-+.-. ..|.+..
T Consensus 314 ---------------------pL~~~~iG~k~~~~~~~~~~~-------------------------------------- 334 (1230)
T KOG0952|consen 314 ---------------------PLTQGFIGIKGKKNRQQKKNI-------------------------------------- 334 (1230)
T ss_pred ---------------------ceeeeEEeeecccchhhhhhH--------------------------------------
Confidence 001111111000 0000000
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhH----HHHHHHHHhhCCCc------------
Q 000903 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM----LDLLEDYLTFKKWQ------------ 650 (1232)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~----ldiL~~~L~~~g~~------------ 650 (1232)
..++.. +++ +...+||.|+||+....- +..|.+.-...|..
T Consensus 335 -------------------d~~~~~---kv~-e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 335 -------------------DEVCYD---KVV-EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQL 391 (1230)
T ss_pred -------------------HHHHHH---HHH-HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Confidence 011111 222 223458888888876543 33333222222222
Q ss_pred -------EEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhh----------HHH
Q 000903 651 -------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA----------DLQ 713 (1232)
Q Consensus 651 -------~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~----------~~Q 713 (1232)
...-+.++.-.+|+..-+.|..+.- -+|++|...+.|+||++--.+|-=-.-|++.. .+|
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i---~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQ 468 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKEGHI---KVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQ 468 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhcCCc---eEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHH
Confidence 2334556777888888888976443 48999999999999997666654444455544 689
Q ss_pred HHHhhhhcCCCCceEEEEEeeCCcHH
Q 000903 714 AMARAHRLGQTNKVMIFRLITRGSIE 739 (1232)
Q Consensus 714 a~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1232)
.+|||+|.+=.+.-..+-+.+.++++
T Consensus 469 ifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 469 IFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHhccCCCCCCCCceEEEEecccHHH
Confidence 99999998765555555455544433
No 125
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.31 E-value=1.2e-10 Score=151.19 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=87.7
Q ss_pred cCceEEEEecchhHHHHHHHHHhhCCCc---EEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEE
Q 000903 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1232)
Q Consensus 623 ~g~KvLIFsq~~~~ldiL~~~L~~~g~~---~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~V 699 (1232)
....+|||++....++.+.+.|...+++ +.-++|+++..+|+.+++.+ +...+|++|..++.||+++.+++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3568999999999999999999887765 56789999999999886542 234589999999999999999999
Q ss_pred EEEc---------------CCCCh---hhHHHHHHhhhhcCCCCceEEEEEeeCCcHH
Q 000903 700 IIYD---------------SDWNP---HADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1232)
Q Consensus 700 Ii~D---------------~dWNp---~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1232)
|.++ .+-.| ..+.||.||++|. .+-.+|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 9874 22223 5678888888887 467789999876554
No 126
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.28 E-value=1.5e-10 Score=147.68 Aligned_cols=355 Identities=16% Similarity=0.138 Sum_probs=208.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC---CCCeEEEeCCc-cHHHHHHHHHHHcCCC
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLS-TLRNWEREFATWAPQM 359 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~---~~p~LIV~P~s-ll~qW~~E~~~~~p~~ 359 (1232)
...+++|..+++.....+..+.-++|..+||.|||..++....+..... ..+++.|.|.. ++.+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3468999999999887776666899999999999999988888877763 34788888864 4466778888887555
Q ss_pred cEEEE--EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccc------cCCCceeE
Q 000903 360 NVVMY--VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS------LKPIKWQC 431 (1232)
Q Consensus 360 ~vv~~--~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~------l~~i~w~~ 431 (1232)
.+..- +|.....-. ...+. ... .......+ ....-+.+.+++...+...... +..+.-.+
T Consensus 274 ~~~~~~~h~~~~~~~~-~~~~~---------~~~-~~~~~~ds-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 274 SVIGKSLHSSSKEPLL-LEPDQ---------DIL-LTLTTNDS-YKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred ccccccccccccchhh-hcccc---------ccc-eeEEeccc-ccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 55444 554433211 11000 000 00000000 0111223333333332221111 22244568
Q ss_pred EEEcCcccccCc-ccHHHHHHH-hcc--cccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000903 432 MIVDEGHRLKNK-DSKLFSSLK-QYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1232)
Q Consensus 432 vIvDEaHrlKn~-~S~~~~~l~-~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~ 507 (1232)
+|+||+|-+--. ......++. .+. ....|++|||+- ..|.+.
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~------------ 387 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEK------------ 387 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHH------------
Confidence 999999988665 333222222 222 457899999971 011111
Q ss_pred HHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCccccc
Q 000903 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1232)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~ 587 (1232)
|...+ ..... . ..+.+ .+ ..++.|.+..
T Consensus 388 l~~~~----~~~~~-~---~~~~~-----~~---------------------------------------~~~~e~~~~~ 415 (733)
T COG1203 388 LKKAL----GKGRE-V---VENAK-----FC---------------------------------------PKEDEPGLKR 415 (733)
T ss_pred HHHHH----hcccc-e---ecccc-----cc---------------------------------------cccccccccc
Confidence 11111 00000 0 00000 00 0001111110
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHH
Q 000903 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1232)
Q Consensus 588 ~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i 667 (1232)
....+.. .... ..+...+..-...|.+|+|-++.+..+-.+...|+..+.+++.+++......|.+.+
T Consensus 416 ~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 416 KERVDVE-----------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccchhhh-----------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 0000000 0000 112223333345689999999999999999999998888899999999999999998
Q ss_pred HHHhcC--CCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcC--CCCceEEEEEeeCCcHHHHHH
Q 000903 668 DRFNAK--NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QTNKVMIFRLITRGSIEERMM 743 (1232)
Q Consensus 668 ~~Fn~~--~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiG--Q~k~V~Vyrlvt~~TvEE~i~ 743 (1232)
+....- .... .++|+|.+...|+|+. .|.+|- |+. -....+||.||++|-| ....+.||...-......+.+
T Consensus 484 ~~l~~~~~~~~~-~IvVaTQVIEagvDid-fd~mIT-e~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~ 559 (733)
T COG1203 484 RELKKLFKQNEG-FIVVATQVIEAGVDID-FDVLIT-ELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSY 559 (733)
T ss_pred HHHHHHHhccCC-eEEEEeeEEEEEeccc-cCeeee-cCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhh
Confidence 866531 2222 3899999999999998 666653 321 2567899999999999 567788888887777777777
Q ss_pred HHHHHHHHH
Q 000903 744 QMTKKKMVL 752 (1232)
Q Consensus 744 ~~~~~K~~l 752 (1232)
+....++.-
T Consensus 560 ~~~~~~~~~ 568 (733)
T COG1203 560 EKLEKKLKS 568 (733)
T ss_pred hcchhhhcc
Confidence 766665543
No 127
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.9e-11 Score=132.73 Aligned_cols=312 Identities=18% Similarity=0.246 Sum_probs=198.9
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC--CCCeEEEeCCccHHHH-HHHHHHHcCCC--c
Q 000903 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNW-EREFATWAPQM--N 360 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~--~~p~LIV~P~sll~qW-~~E~~~~~p~~--~ 360 (1232)
...-|..|+-= ..+|.+++.-...|+|||.+-...+....... ..-+||++|...+.+- ..-...+.+.. +
T Consensus 49 PSaIQqraI~p----~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 49 PSAIQQRAILP----CIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred chHHHhccccc----cccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 44456666532 25788999999999999998433333332221 1267999998877543 33344555444 3
Q ss_pred EEEEEcChhHH-HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc--ccccCCCceeEEEEcCc
Q 000903 361 VVMYVGTSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (1232)
Q Consensus 361 vv~~~g~~~~r-~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d--~~~l~~i~w~~vIvDEa 437 (1232)
+....|...-+ +.- .......+|++.|+..+... ...|..-...+.|+|||
T Consensus 125 v~~~igg~~~~~~~~--------------------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQ--------------------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred eeeecCcccchhhhh--------------------------hhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 44344432221 110 00124578999998665432 23555556789999999
Q ss_pred ccccCc--ccHHHHHHHhcccc-cEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000903 438 HRLKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1232)
Q Consensus 438 HrlKn~--~S~~~~~l~~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1232)
...... .-+.+.....+..+ ..+++|||-- .++. .+-+.
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p----~~vl----------------------------------~vt~~ 220 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMP----SDVL----------------------------------EVTKK 220 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCc----HHHH----------------------------------HHHHH
Confidence 987654 34666666666544 4577888831 0100 00000
Q ss_pred hhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000903 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1232)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~ 594 (1232)
|| . ....+.+.-...+.+. .++ -|..
T Consensus 221 f~-------------~-~pv~i~vkk~~ltl~g----------------------------ikq----~~i~-------- 246 (397)
T KOG0327|consen 221 FM-------------R-EPVRILVKKDELTLEG----------------------------IKQ----FYIN-------- 246 (397)
T ss_pred hc-------------c-CceEEEecchhhhhhh----------------------------eee----eeee--------
Confidence 00 0 0011111100000000 000 0000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 000903 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1232)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~ 674 (1232)
+....|+..|..+.. .-...+||++..+-++.|.+.|..+|+....++|.+...+|..++..|+.+.
T Consensus 247 ---------v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gs 313 (397)
T KOG0327|consen 247 ---------VEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGS 313 (397)
T ss_pred ---------ccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCC
Confidence 000116666666666 3346899999999999999999999999999999999999999999998866
Q ss_pred CCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCc
Q 000903 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1232)
Q Consensus 675 s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~T 737 (1232)
+. +|++|...+.||+++.++.||+||.|-|+.+++.++||++|.|-+- ....++++.+
T Consensus 314 sr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~d 371 (397)
T KOG0327|consen 314 SR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEED 371 (397)
T ss_pred ce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHhh
Confidence 64 8999999999999999999999999999999999999999999653 3345666543
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=7.1e-10 Score=135.27 Aligned_cols=120 Identities=20% Similarity=0.179 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|+..+.+-+..+.+.|..|||.+..+...+.|...|...|++...+..... +.-..+|.+= +..+ .+-|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCCC--cEEEEec
Confidence 456888899999999999999999999999999999999999999999998744 3334555543 3333 5799999
Q ss_pred ccccccccCCC---------------CEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000903 686 AGGLGINLATA---------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1232)
Q Consensus 686 agg~GINL~~a---------------d~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1232)
.+|.|.|+.-. =+||.-...-|-..+.|..||++|.|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999887632 2788888889999999999999999987665543
No 129
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.23 E-value=5.3e-11 Score=133.47 Aligned_cols=312 Identities=17% Similarity=0.239 Sum_probs=206.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHH-HHHHHHhhCC-CC-CeEEEeCCccH-HH---HHHHHHHHcC
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER-IS-PHLVVAPLSTL-RN---WEREFATWAP 357 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqai-a~l~~l~~~~-~~-p~LIV~P~sll-~q---W~~E~~~~~p 357 (1232)
+..|-|...++-+ -.+...+-..=+|.|||..-+ -.+..|.... .+ +.||+.|..-| .| ...++.+++
T Consensus 43 ~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 4667777776544 455566666679999998753 3344444332 23 89999997544 34 445556655
Q ss_pred CCcEE-EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc--ccCCCceeEEEE
Q 000903 358 QMNVV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 434 (1232)
Q Consensus 358 ~~~vv-~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~--~l~~i~w~~vIv 434 (1232)
+++.. .+.|+....+.+.- ....|||+.|+..+..-.. .|.--...|||+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l---------------------------~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILL---------------------------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred chhhhhhcccchHHHHHHHh---------------------------ccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 56665 45555544332211 1357899988887654322 122334578999
Q ss_pred cCcccccC--cccHHHHHHHhccc-ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHh
Q 000903 435 DEGHRLKN--KDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1232)
Q Consensus 435 DEaHrlKn--~~S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~ 511 (1232)
|||.+|-. ..-++.+.+..+.. .-.+++|||- .+.+.+ |. +.-
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~lv~------------------fa---------------kaG 216 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDLVD------------------FA---------------KAG 216 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhhHH------------------HH---------------Hcc
Confidence 99999954 45678888888864 4578999993 111110 10 000
Q ss_pred hhhhhhhhhhhhHhhcCCCcEEE-EEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCC
Q 000903 512 LAPHLLRRVKKDVMKELPPKKEL-ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1232)
Q Consensus 512 L~p~~lRR~k~dv~~~LP~k~e~-~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e 590 (1232)
| .||.... .|.-.+++. .+++
T Consensus 217 l---------------~~p~lVRldvetkise~------------------------------lk~~------------- 238 (529)
T KOG0337|consen 217 L---------------VPPVLVRLDVETKISEL------------------------------LKVR------------- 238 (529)
T ss_pred C---------------CCCceEEeehhhhcchh------------------------------hhhh-------------
Confidence 1 1111111 010111110 0011
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHH
Q 000903 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (1232)
Q Consensus 591 ~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~F 670 (1232)
...+....|...|..++..... .++.+||+.....++++...|...|+....+.|++...-|..-+.+|
T Consensus 239 ----------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F 307 (529)
T KOG0337|consen 239 ----------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDF 307 (529)
T ss_pred ----------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccc
Confidence 1112334566677776665443 45899999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 671 n~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
+.... -+|++|+.+..|++++-.|+||.||.+-.+..+..|.||+.|.|.+- .-|-||+..
T Consensus 308 ~~~k~---~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 308 RGRKT---SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred cCCcc---ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 76544 48999999999999999999999999999999999999999998653 456677654
No 130
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.16 E-value=4.9e-10 Score=121.23 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=104.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhC--CC-CCeEEEeCC-ccHHHHHHHHHHHcC--
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE--RI-SPHLVVAPL-STLRNWEREFATWAP-- 357 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~--~~-~p~LIV~P~-sll~qW~~E~~~~~p-- 357 (1232)
.+++||.++++-+ .++.+++++.++|.|||+++ +.++..+... .. ..+|||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~----~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPL----LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5899999999776 34889999999999999985 4445555544 23 379999995 677889999888864
Q ss_pred CCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc--cccCCCceeEEEEc
Q 000903 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1232)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~--~~l~~i~w~~vIvD 435 (1232)
+.++..++|..........+ ....+|+|+|.+.+.... ..+.--.++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--------------------------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 56777788876543322211 125689999988765421 11222356899999
Q ss_pred CcccccCcc-c-HHHHHHHhcc-cccEEEEecCCC
Q 000903 436 EGHRLKNKD-S-KLFSSLKQYS-TRHRVLLTGTPL 467 (1232)
Q Consensus 436 EaHrlKn~~-S-~~~~~l~~l~-~~~rllLTGTPl 467 (1232)
|+|.+.+.. . .+...+..+. ....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986543 1 2222333444 356789999985
No 131
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.15 E-value=3.2e-10 Score=118.59 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeCC-ccHHHHHHHHHHHcC--CCcEEE
Q 000903 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAP--QMNVVM 363 (1232)
Q Consensus 288 pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P~-sll~qW~~E~~~~~p--~~~vv~ 363 (1232)
|+|.+++.-+. .+.+.++...+|.|||..++..+....... ...+||++|. +++.+-..++..++. ..++..
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 79999987763 678899999999999999876665544443 3589999995 677888889998884 468888
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccc--cCCCceeEEEEcCccccc
Q 000903 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLK 441 (1232)
Q Consensus 364 ~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~--l~~i~w~~vIvDEaHrlK 441 (1232)
++|........... -....+|+|+|++.+...... +.-...++||+||+|.+-
T Consensus 78 ~~~~~~~~~~~~~~-------------------------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~ 132 (169)
T PF00270_consen 78 LHGGQSISEDQREV-------------------------LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS 132 (169)
T ss_dssp ESTTSCHHHHHHHH-------------------------HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH
T ss_pred cccccccccccccc-------------------------ccccccccccCcchhhccccccccccccceeeccCcccccc
Confidence 87765422111110 013578999999999765432 111237899999999997
Q ss_pred Cc--ccHHHHHHHhc---ccccEEEEecCCCCCCHH
Q 000903 442 NK--DSKLFSSLKQY---STRHRVLLTGTPLQNNLD 472 (1232)
Q Consensus 442 n~--~S~~~~~l~~l---~~~~rllLTGTPlqN~~~ 472 (1232)
.. .......+..+ .....+++||||- .+++
T Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 133 DETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 63 22333333443 2356899999995 4443
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=3.1e-09 Score=132.74 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=99.0
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeec
Q 000903 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1232)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsT 684 (1232)
....|...+.+-+..+.+.|..|||-+.++...+.|..+|...|+++..+..... +.-..+|. +++..+ .+-|+|
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIAT 504 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIAT 504 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEec
Confidence 3467999999999999999999999999999999999999999999988887643 33344555 344444 478999
Q ss_pred cccccccccC-------------------------------------CCCEEEEEcCCCChhhHHHHHHhhhhcCCCCce
Q 000903 685 RAGGLGINLA-------------------------------------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1232)
Q Consensus 685 ragg~GINL~-------------------------------------~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V 727 (1232)
..+|.|.|+. ..=+||.-...=|-..|.|..||++|.|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999998874 123788889999999999999999999987665
Q ss_pred EEE
Q 000903 728 MIF 730 (1232)
Q Consensus 728 ~Vy 730 (1232)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 543
No 133
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.13 E-value=1.5e-09 Score=119.45 Aligned_cols=298 Identities=17% Similarity=0.149 Sum_probs=191.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~~vv 362 (1232)
.+.||.|++++|-. ..+..++|...+|-||++..- +-.|.. .|-.|||||+ |++....-.++....+....
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyq--lpal~a--dg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQ--LPALCA--DGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhh--hhHHhc--CCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 46899999999876 578889999999999997531 111112 2578999996 77776666777665333322
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccc-------cCCCceeEEEEc
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------LKPIKWQCMIVD 435 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~-------l~~i~w~~vIvD 435 (1232)
--..++..-... +.++ ......|..+.+|++.+.+...+ +..-.|.+|-||
T Consensus 165 nansske~~k~v-~~~i---------------------~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 165 NANSSKEEAKRV-EAAI---------------------TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred cCcccHHHHHHH-HHHH---------------------cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 222222221111 1111 11235788999999988665333 333457899999
Q ss_pred CcccccC-------cccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000903 436 EGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1232)
Q Consensus 436 EaHrlKn-------~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L 508 (1232)
|+|-... ..+.+...-++|+....++||||.-.+-+.+...+|..-..
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~------------------------- 277 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA------------------------- 277 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh-------------------------
Confidence 9987643 33344444456777788999999755554444433321000
Q ss_pred HHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC
Q 000903 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
|. .|--.|.|-|.-.
T Consensus 278 ------~t-----------------------------------------------------------f~a~fnr~nl~ye 292 (695)
T KOG0353|consen 278 ------FT-----------------------------------------------------------FRAGFNRPNLKYE 292 (695)
T ss_pred ------he-----------------------------------------------------------eecccCCCCceeE
Confidence 00 0111122222222
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHH
Q 000903 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1232)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~ 668 (1232)
+...+...++- ..-+.+++..-. .|..-||||-...-.+-+...|...|+....++..+.+++|.-+-.
T Consensus 293 v~qkp~n~dd~----------~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 293 VRQKPGNEDDC----------IEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred eeeCCCChHHH----------HHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 11111111111 111223332211 3778899999888899999999999999999999999999888877
Q ss_pred HHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHH
Q 000903 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAM 715 (1232)
Q Consensus 669 ~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~ 715 (1232)
.+-+ +.+-++++|-|.|.||+-+.+..||+-..+-+-.++-||-
T Consensus 362 ~w~a---~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqas 405 (695)
T KOG0353|consen 362 GWIA---GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQAS 405 (695)
T ss_pred cccc---cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHH
Confidence 7744 4556899999999999999999999999999999999954
No 134
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.09 E-value=9e-09 Score=115.63 Aligned_cols=318 Identities=16% Similarity=0.195 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHc-C--CCcEEE
Q 000903 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-P--QMNVVM 363 (1232)
Q Consensus 288 pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~-p--~~~vv~ 363 (1232)
|.|..+++-+. ..+..+.+++.+|.||++..- |-.|...+ -++||.|+ .++....+-+.+.- | .+|..+
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCyQ--LPaL~~~g--ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKl 95 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCYQ--LPALVHGG--ITIVISPLIALIKDQIDHLKRLKVPCESLNSKL 95 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhhh--chHHHhCC--eEEEehHHHHHHHHHHHHHHhcCCchhHhcchh
Confidence 67888887653 567889999999999997531 12223333 67888885 55555566665432 1 111111
Q ss_pred EEcChhHHH-HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc-----ccc-CCCceeEEEEcC
Q 000903 364 YVGTSQARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-----ASL-KPIKWQCMIVDE 436 (1232)
Q Consensus 364 ~~g~~~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~-----~~l-~~i~w~~vIvDE 436 (1232)
+..+|. ++.+.+ .......++..|+|+...+. ..| +.-...+++|||
T Consensus 96 ---St~ER~ri~~DL~-----------------------~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 96 ---STVERSRIMGDLA-----------------------KEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDE 149 (641)
T ss_pred ---hHHHHHHHHHHHH-----------------------hcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEech
Confidence 112222 222221 11234457778888775531 112 223467999999
Q ss_pred cccccCccc------HHHHHHHhc-ccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHH-HhhhhhHHHHHHH
Q 000903 437 GHRLKNKDS------KLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE-FKDINQEEQISRL 508 (1232)
Q Consensus 437 aHrlKn~~S------~~~~~l~~l-~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~-~~~~~~~~~~~~L 508 (1232)
||-....+- ...-+|++. ..--.+.||||.-..--+++|..|++-.|-..-.-..|... |.++
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~--------- 220 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN--------- 220 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH---------
Confidence 998754322 222333332 23346789999866667778888876665321111111110 0000
Q ss_pred HHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccC
Q 000903 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1232)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~ 588 (1232)
.|+.+++..+..|. .--+++...|--+..
T Consensus 221 --------------------------------------~~K~~I~D~~~~La-------------DF~~~~LG~~~~~~~ 249 (641)
T KOG0352|consen 221 --------------------------------------HMKSFITDCLTVLA-------------DFSSSNLGKHEKASQ 249 (641)
T ss_pred --------------------------------------HHHHHhhhHhHhHH-------------HHHHHhcCChhhhhc
Confidence 11122111111111 111222222211110
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHH
Q 000903 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1232)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~ 668 (1232)
.. +....--||||......+.+.-.|..+|++..-++.+....+|..+-+
T Consensus 250 ~~------------------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe 299 (641)
T KOG0352|consen 250 NK------------------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQE 299 (641)
T ss_pred CC------------------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHH
Confidence 00 001225799999999999999999999999999999999999999999
Q ss_pred HHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEE
Q 000903 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1232)
Q Consensus 669 ~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyr 731 (1232)
.+-.++.. ++++|-+.|.|++=+.+..||+++++-|-+-+-|--||++|-|-..-++.|+
T Consensus 300 ~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 300 KWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred HHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 99876665 8999999999999999999999999999999999999999999887787765
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.07 E-value=4.5e-09 Score=137.00 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=63.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCcc-HHHHHH-HHH---HHc
Q 000903 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWER-EFA---TWA 356 (1232)
Q Consensus 282 ~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sl-l~qW~~-E~~---~~~ 356 (1232)
.|.+.||.|.+.+..+...+..+..+++-..+|+|||+..+.-+..... ...+++|.||+.. ..||.. ++. +.+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 4568999999988888888888888999999999999988666544433 3359999999755 567643 444 333
Q ss_pred C-CCcEEEEEcCh
Q 000903 357 P-QMNVVMYVGTS 368 (1232)
Q Consensus 357 p-~~~vv~~~g~~ 368 (1232)
+ ++++++..|..
T Consensus 321 ~~~~~~~~~kG~~ 333 (850)
T TIGR01407 321 NFKINAALIKGKS 333 (850)
T ss_pred CCCceEEEEEcch
Confidence 3 47788777765
No 136
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.1e-07 Score=110.52 Aligned_cols=132 Identities=19% Similarity=0.285 Sum_probs=108.8
Q ss_pred HHHHHHHH---HHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecccccc
Q 000903 613 LDKMMVKL---KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGL 689 (1232)
Q Consensus 613 L~klL~~l---~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~ 689 (1232)
++.|+.++ .+.|.||||-+-..+|.+-|.+||...|+++..++..+..-+|..+|..... +.|-+|+....+-+
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~---G~~DvLVGINLLRE 508 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINLLRE 508 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc---CCccEEEeehhhhc
Confidence 44555444 5679999999999999999999999999999999999999999999999965 44558999999999
Q ss_pred ccccCCCCEEEEEcCCC-----ChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHHHHHHH
Q 000903 690 GINLATADTVIIYDSDW-----NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1232)
Q Consensus 690 GINL~~ad~VIi~D~dW-----Np~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~~~~~ 748 (1232)
||+|+.+..|.|+|.|- +-...+|-+|||.|--..+ |..|-=...+|+++.|-+..++
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETERR 571 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHHHH
Confidence 99999999999999874 7788999999999955443 4444444456777777665543
No 137
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=2.8e-08 Score=123.08 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|+..+.+-+..+.+.|..|||.+..+...+.|..+|...|++...++...- +.-..+|. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCCCCC--eEEEecc
Confidence 467888888888988999999999999999999999999999999999998643 22334443 344344 5799999
Q ss_pred ccccccccCCCC--------EEEEEcCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000903 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1232)
Q Consensus 686 agg~GINL~~ad--------~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1232)
.+|+|.|+.-.. +||....+=|-..+.|..||++|.|..-....|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987544 899999999999999999999999987665543
No 138
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.04 E-value=6.9e-09 Score=129.25 Aligned_cols=72 Identities=31% Similarity=0.487 Sum_probs=60.2
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEE-----EcCC---C---ChhhHHHHHH
Q 000903 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YDSD---W---NPHADLQAMA 716 (1232)
Q Consensus 648 g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi-----~D~d---W---Np~~~~Qa~g 716 (1232)
.|.|..-+.+++..+|+..-+-|..+ .+-+|+||...+-|+||+ |+|||| |||. | +|...+|.+|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g---~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADG---HIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcC---ceeEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 46788889999999999999999654 345899999999999998 577776 6664 4 6899999999
Q ss_pred hhhhcCC
Q 000903 717 RAHRLGQ 723 (1232)
Q Consensus 717 R~hRiGQ 723 (1232)
|++|.+-
T Consensus 683 ragrp~~ 689 (1674)
T KOG0951|consen 683 RAGRPQY 689 (1674)
T ss_pred hcCCCcc
Confidence 9999763
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.93 E-value=9.8e-08 Score=118.15 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=88.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH-HHHHHHHHHHcC-----C
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP-----Q 358 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll-~qW~~E~~~~~p-----~ 358 (1232)
.+...|.- |.+....+..-.|+| ++|+|||.-.+....++...+ ++.+||+|+.+| .|-..-+.++++ .
T Consensus 82 ~~ws~QR~---WakR~~rg~SFaiiA-PTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~ 156 (1187)
T COG1110 82 RPWSAQRV---WAKRLVRGKSFAIIA-PTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSLD 156 (1187)
T ss_pred CchHHHHH---HHHHHHcCCceEEEc-CCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCcc
Confidence 45567765 665554444445555 999999976655555554444 699999997655 788888888873 3
Q ss_pred CcEEEEEcChhHHH--HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcC
Q 000903 359 MNVVMYVGTSQARN--IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~--~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDE 436 (1232)
..++ ||+.-..++ .+.+ +-....|||+|||-..+.+....|.+.+|++|+||.
T Consensus 157 ~~~~-yh~~l~~~ekee~le------------------------~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 157 VLVV-YHSALPTKEKEEALE------------------------RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred eeee-eccccchHHHHHHHH------------------------HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEcc
Confidence 3444 888733322 1111 012368999999999999999999999999999999
Q ss_pred cccc
Q 000903 437 GHRL 440 (1232)
Q Consensus 437 aHrl 440 (1232)
+..+
T Consensus 212 VDA~ 215 (1187)
T COG1110 212 VDAI 215 (1187)
T ss_pred HHHH
Confidence 8854
No 140
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.86 E-value=2.2e-08 Score=111.45 Aligned_cols=238 Identities=20% Similarity=0.243 Sum_probs=145.0
Q ss_pred CCCC-CCCCCCCcHHHHHHHHHHHHhhc------CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC-CccHHH
Q 000903 276 HSPE-FLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRN 347 (1232)
Q Consensus 276 ~~P~-~~~~~~L~pyQ~~gv~wL~~~~~------~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P-~sll~q 347 (1232)
..|. .+..+.|..-|+|+|-+....+. .+.+.+|.|.+|.||.-|+.++|..-+..+..+.+.|.. ..+...
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD 106 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH
Confidence 3344 45668999999999988765554 367889999999999999999998877776666666666 455566
Q ss_pred HHHHHHHHcCC-CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcc-----
Q 000903 348 WEREFATWAPQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----- 421 (1232)
Q Consensus 348 W~~E~~~~~p~-~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~----- 421 (1232)
-.+.+...... +.+..+..-+ .+ .....+..|+.+||.++....
T Consensus 107 a~RDl~DIG~~~i~v~~l~~~~------------------------~~------~~~~~~~GvlF~TYs~L~~~~~~~~~ 156 (303)
T PF13872_consen 107 AERDLRDIGADNIPVHPLNKFK------------------------YG------DIIRLKEGVLFSTYSTLISESQSGGK 156 (303)
T ss_pred HHHHHHHhCCCcccceechhhc------------------------cC------cCCCCCCCccchhHHHHHhHHhccCC
Confidence 66666654311 1111111100 00 001245679999999997763
Q ss_pred --cccCC-Cce------eEEEEcCcccccCccc------HHHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHh--h
Q 000903 422 --ASLKP-IKW------QCMIVDEGHRLKNKDS------KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMH--F 480 (1232)
Q Consensus 422 --~~l~~-i~w------~~vIvDEaHrlKn~~S------~~~~~l~~l----~~~~rllLTGTPlqN~~~EL~~Ll~--f 480 (1232)
..|.. +.| .+||+||||+.||..+ +...++..+ ...+.+..|||... .+..|--+-+ +
T Consensus 157 ~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas-ep~NmaYm~RLGL 235 (303)
T PF13872_consen 157 YRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS-EPRNMAYMSRLGL 235 (303)
T ss_pred ccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC-CCceeeeeeeccc
Confidence 22322 234 3888999999999754 555665544 34568899999852 2222211111 1
Q ss_pred hc-CCCCCChHHHHHHHhhhhhHHHHHHHHHhh--hhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHH
Q 000903 481 LD-AGKFGSLEEFQEEFKDINQEEQISRLHRML--APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 550 (1232)
Q Consensus 481 L~-p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L--~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~ 550 (1232)
-. -..|.+..+|.+....-. ....+-+..-| ...+++|.. ++-.....++.++|++.|.+.|+.
T Consensus 236 WG~gtpf~~~~~f~~a~~~gG-v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 236 WGPGTPFPDFDDFLEAMEKGG-VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred cCCCCCCCCHHHHHHHHHhcC-chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 11 124677788877665321 11111111111 223444433 344567889999999999999964
No 141
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.81 E-value=1.4e-07 Score=119.69 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=35.9
Q ss_pred hhhhHHHHHHHHHHHHHHc---------CceEEEEecchhHHHHHHHHHhh
Q 000903 605 ESSGKLQLLDKMMVKLKEQ---------GHRVLIYSQFQHMLDLLEDYLTF 646 (1232)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~---------g~KvLIFsq~~~~ldiL~~~L~~ 646 (1232)
+..+|+..|.++|.++... ..+|||||++.++...|.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4789999999999886544 46899999999999999999965
No 142
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.80 E-value=2.9e-07 Score=115.06 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCC-CHHHHHHHHHHHhcCCCCceEEEeec
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKV-GGAERQIRIDRFNAKNSSRFCFLLST 684 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~-~~~eRq~~i~~Fn~~~s~~~v~LlsT 684 (1232)
...|...+.+-+..+.+.|..|||-+..+..-+.|..+|...|+++..+.... ..+.-..+|.+ ++..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 35688888888888889999999999999999999999999999999999974 33444556665 33333 478999
Q ss_pred ccccccccc
Q 000903 685 RAGGLGINL 693 (1232)
Q Consensus 685 ragg~GINL 693 (1232)
..+|+|.|+
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999765
No 143
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.76 E-value=9.6e-08 Score=116.76 Aligned_cols=168 Identities=19% Similarity=0.280 Sum_probs=112.1
Q ss_pred cccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHH-HH
Q 000903 271 FQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WE 349 (1232)
Q Consensus 271 ~~~~~~~P~~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~q-W~ 349 (1232)
|..+-..|....+..|-.+|.+++--| ..|..+++|.-+-.|||+.|=..++.- .....+.+.-.|-..|+| =-
T Consensus 283 f~~lVpe~a~~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 283 FYQLVPEMALIYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred HHHhchhHHhhCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchH
Confidence 333333344445578999999997655 889999999999999999974333321 223347888899777755 46
Q ss_pred HHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc----ccccC
Q 000903 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLK 425 (1232)
Q Consensus 350 ~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d----~~~l~ 425 (1232)
++|+.-+.+.. +++|+..- ......+|+|-|+++.. ...++
T Consensus 358 RDFk~tF~Dvg--LlTGDvqi---------------------------------nPeAsCLIMTTEILRsMLYrgadliR 402 (1248)
T KOG0947|consen 358 RDFKETFGDVG--LLTGDVQI---------------------------------NPEASCLIMTTEILRSMLYRGADLIR 402 (1248)
T ss_pred HHHHHhccccc--eeecceee---------------------------------CCCcceEeehHHHHHHHHhcccchhh
Confidence 78877665655 66676532 23567899999998763 34455
Q ss_pred CCceeEEEEcCcccccCcc-cHHHHHHHhccccc--EEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhh
Q 000903 426 PIKWQCMIVDEGHRLKNKD-SKLFSSLKQYSTRH--RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1232)
Q Consensus 426 ~i~w~~vIvDEaHrlKn~~-S~~~~~l~~l~~~~--rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~ 500 (1232)
.+.| ||+||+|.+-+.. ...+..+.-+-.+| -++||||- ++..+|..|.+...
T Consensus 403 DvE~--VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV--------------------PN~~EFA~WIGRtK 458 (1248)
T KOG0947|consen 403 DVEF--VIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV--------------------PNTLEFADWIGRTK 458 (1248)
T ss_pred ccce--EEEeeeeecccccccccceeeeeeccccceEEEEeccC--------------------CChHHHHHHhhhcc
Confidence 5555 9999999986533 23344443333444 48999994 45667888776543
No 144
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.73 E-value=2.4e-09 Score=113.16 Aligned_cols=51 Identities=47% Similarity=1.105 Sum_probs=46.0
Q ss_pred ccccccccccCCCC---eeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCCC
Q 000903 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1232)
Q Consensus 49 ~~~~~C~~C~~~~~---ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1232)
-...+|.+||.+++ ||+||.|+|+|||+||.||+..+|+|.|.|..|....
T Consensus 279 ieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 279 IECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred eecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 35688999998754 9999999999999999999999999999999998654
No 145
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.71 E-value=5.3e-09 Score=88.31 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=42.3
Q ss_pred chhhhhhhccCCCcc---eeEEeeeccccccccccccCCcCcc-HHHHHHHHh
Q 000903 193 TVDRILACRGEDDEK---EYLVKYKELSYDECYWEYESDISAF-QPEIERFIK 241 (1232)
Q Consensus 193 ~verIi~~r~~~~~~---eyLVKWkgL~Y~e~tWE~~~~~~~~-~~~i~~~~~ 241 (1232)
+|+|||++|...+.. +|||||+|+||++||||.+..+... +..|++|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 689999999766555 9999999999999999999887754 777999975
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.68 E-value=1.5e-06 Score=108.40 Aligned_cols=368 Identities=18% Similarity=0.173 Sum_probs=200.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC-CccHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P-~sll~qW~~E~~~~~p~~~vv 362 (1232)
..|-+-|..+++-+..........+|.-.+|.|||-.-+.++...+..+ +-+||+|| -++++|-...|+.-++ .++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG-AKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhC-CChh
Confidence 4688899999998876653456689999999999999888888887776 58999999 5888998888888774 8888
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccc--
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL-- 440 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrl-- 440 (1232)
++|..-........+.- .......|||-|...+-.-.. +-.+|||||=|--
T Consensus 275 vlHS~Ls~~er~~~W~~----------------------~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sY 327 (730)
T COG1198 275 VLHSGLSPGERYRVWRR----------------------ARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSY 327 (730)
T ss_pred hhcccCChHHHHHHHHH----------------------HhcCCceEEEEechhhcCchh-----hccEEEEeccccccc
Confidence 88877655543332210 012456788888766533222 3368999999974
Q ss_pred cCcccHHHHH----H--HhcccccEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHhhhh
Q 000903 441 KNKDSKLFSS----L--KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1232)
Q Consensus 441 Kn~~S~~~~~----l--~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p 514 (1232)
|..++..+.+ + ......-.+|-||||- ++-+++.. .. .
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS---LES~~~~~---~g------------------------------~ 371 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATPS---LESYANAE---SG------------------------------K 371 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC---HHHHHhhh---cC------------------------------c
Confidence 3333222211 1 1122345688899992 22111110 00 0
Q ss_pred hhhhhhhhhHhh-cCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHHHhcCCcch-----hHHHHHHHHHHHhCCcc----
Q 000903 515 HLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI-----SLINVVMELRKLCCHPY---- 584 (1232)
Q Consensus 515 ~~lRR~k~dv~~-~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~-----~l~~il~~Lrk~c~hP~---- 584 (1232)
+.+-+++.-... .+|......+.-+....-..+-..+++.....+.++...-. .+.. .+ +.+.|.|..
T Consensus 372 y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~-~l-~C~~Cg~v~~Cp~ 449 (730)
T COG1198 372 YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAP-LL-LCRDCGYIAECPN 449 (730)
T ss_pred eEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccc-ee-ecccCCCcccCCC
Confidence 100011111111 13322222211111111000111222222222322111000 0000 00 122232221
Q ss_pred -----cccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecc--hhHHHHHHHHHhhCCCcEEEEeCC
Q 000903 585 -----MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQF--QHMLDLLEDYLTFKKWQYERIDGK 657 (1232)
Q Consensus 585 -----L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KvLIFsq~--~~~ldiL~~~L~~~g~~~~ridG~ 657 (1232)
-+........ ..-+|.- ..+-...-+=|...|++.-. .++.+.|..++ -+.++.|+|++
T Consensus 450 Cd~~lt~H~~~~~L~---------CH~Cg~~---~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F--P~~rv~r~d~D 515 (730)
T COG1198 450 CDSPLTLHKATGQLR---------CHYCGYQ---EPIPQSCPECGSEHLRAVGPGTERIEEELKRLF--PGARIIRIDSD 515 (730)
T ss_pred CCcceEEecCCCeeE---------eCCCCCC---CCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC--CCCcEEEEccc
Confidence 1110000000 0000000 00000001124455665432 22334444444 37899999999
Q ss_pred CCHHH--HHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC------------ChhhHHHHHHhhhhcCC
Q 000903 658 VGGAE--RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------------NPHADLQAMARAHRLGQ 723 (1232)
Q Consensus 658 ~~~~e--Rq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW------------Np~~~~Qa~gR~hRiGQ 723 (1232)
++... -..+++.|.++..+ |||.|....-|.|++....|.++|.|- ..+...|..||++|-+-
T Consensus 516 tt~~k~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~ 592 (730)
T COG1198 516 TTRRKGALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGK 592 (730)
T ss_pred cccchhhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCC
Confidence 87543 46789999887666 899999999999999999998887653 23567899999999877
Q ss_pred CCceEEEEEeeC
Q 000903 724 TNKVMIFRLITR 735 (1232)
Q Consensus 724 ~k~V~Vyrlvt~ 735 (1232)
.-.|.|--.-..
T Consensus 593 ~G~VvIQT~~P~ 604 (730)
T COG1198 593 PGEVVIQTYNPD 604 (730)
T ss_pred CCeEEEEeCCCC
Confidence 777765444433
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=1.7e-06 Score=108.16 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCC-CCHHHHHHHHHHHhcCCCCceEEEeec
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST 684 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~-~~~~eRq~~i~~Fn~~~s~~~v~LlsT 684 (1232)
...|...+.+-+..+.+.|..|||-+..+..-+.|...|...|+++..++.. ...+.-..+|.+ ++..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 4678888888888999999999999999999999999999999999999997 333444556655 34444 468999
Q ss_pred cccccccccC
Q 000903 685 RAGGLGINLA 694 (1232)
Q Consensus 685 ragg~GINL~ 694 (1232)
..+|.|-|+.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999996653
No 148
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.66 E-value=5.1e-07 Score=117.94 Aligned_cols=139 Identities=19% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhCCC-CCeEEEeC-CccHHHHHHHHHHHcCCCcEEEEEcChhHHHHHHHhhhc
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAP-LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~~~-~p~LIV~P-~sll~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~ 380 (1232)
.+.+|++-+-+|+|||++++-++..+..... ..+++||- ..+-.|-..+|..+........ ...+...+++.-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l-- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELL-- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHH--
Confidence 4567999999999999998877777766533 35677777 4666899999999875433322 222333333210
Q ss_pred CCCCchhhhccccCccccccccccccccEEEecHHHHhhcccc----cCCCceeEEEEcCcccccCcccHHHHHHHh-cc
Q 000903 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQ-YS 455 (1232)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~----l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~-l~ 455 (1232)
....-.|+|||-+.+...... ...-+.-+||+|||||- ....+.+.++. +.
T Consensus 347 ----------------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~ 402 (962)
T COG0610 347 ----------------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALK 402 (962)
T ss_pred ----------------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhc
Confidence 001235999999888654322 22335568999999984 33334444333 34
Q ss_pred cccEEEEecCCCCCC
Q 000903 456 TRHRVLLTGTPLQNN 470 (1232)
Q Consensus 456 ~~~rllLTGTPlqN~ 470 (1232)
...-++.||||+...
T Consensus 403 ~a~~~gFTGTPi~~~ 417 (962)
T COG0610 403 KAIFIGFTGTPIFKE 417 (962)
T ss_pred cceEEEeeCCccccc
Confidence 467799999997554
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.63 E-value=3.7e-06 Score=106.15 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
...|+.++.+-+..+.+.|..|||-+.++..-++|..+|..+|+++..++...- +.-..+|.+ ++..+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~--AG~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAE--AGQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHh--cCCCC--cEEEecc
Confidence 457899999999999999999999999999999999999999999998887643 333345543 23333 4789999
Q ss_pred ccccccccC--------CCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000903 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1232)
Q Consensus 686 agg~GINL~--------~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vy 730 (1232)
.+|+|.|+. ..=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998876 234788889999999999999999999987655533
No 150
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=98.63 E-value=4.5e-08 Score=83.30 Aligned_cols=42 Identities=60% Similarity=0.900 Sum_probs=38.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccchh
Q 000903 863 SERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEED 904 (1232)
Q Consensus 863 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 904 (1232)
..+++||++||+++|+++++++...||||||.||||+|...+
T Consensus 21 ~~~~~yWe~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~ 62 (66)
T PF06465_consen 21 STDPNYWEKLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEED 62 (66)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 458999999999999999999999999999999999986543
No 151
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.62 E-value=1.2e-06 Score=111.79 Aligned_cols=157 Identities=19% Similarity=0.250 Sum_probs=105.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCC-
Q 000903 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM- 359 (1232)
Q Consensus 282 ~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~- 359 (1232)
.+..|-|+|.+++.-| ..+.+++++..+|.|||+.+--++..-...+. ++....|. ++-.|=.++|..-+.+.
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 4588999999998766 88999999999999999998666655444443 48999995 44455566665444222
Q ss_pred -cEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc----ccccCCCceeEEEE
Q 000903 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIV 434 (1232)
Q Consensus 360 -~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d----~~~l~~i~w~~vIv 434 (1232)
-+-+++|+.. -.....++|+|-|.++.. ...+..+. .||+
T Consensus 191 ~~vGL~TGDv~---------------------------------IN~~A~clvMTTEILRnMlyrg~~~~~~i~--~ViF 235 (1041)
T COG4581 191 DMVGLMTGDVS---------------------------------INPDAPCLVMTTEILRNMLYRGSESLRDIE--WVVF 235 (1041)
T ss_pred hhccceeccee---------------------------------eCCCCceEEeeHHHHHHHhccCcccccccc--eEEE
Confidence 2234444432 123556777777888653 34455555 4999
Q ss_pred cCcccccCcc-cHHHHH-HHhcccc-cEEEEecCCCCCCHHHHHHHHhhhcCCCCCChHHHHHHHhh
Q 000903 435 DEGHRLKNKD-SKLFSS-LKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1232)
Q Consensus 435 DEaHrlKn~~-S~~~~~-l~~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~~~~F~~~~~~ 498 (1232)
||.|.+.... ...+.. +..+... .-++||||- ++..+|.+|+..
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 9999996543 233333 3333333 678999994 577888888764
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=4.9e-06 Score=106.81 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=58.5
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhh-CC-CCCeEEEeCC-ccHHHHHHHHHH
Q 000903 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPL-STLRNWEREFAT 354 (1232)
Q Consensus 281 ~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~-~~-~~p~LIV~P~-sll~qW~~E~~~ 354 (1232)
++-..+||.|.+.+.-+......+.+++|-..+|+|||+.+|+....... .+ ..++++.+.+ +.+.|-.+|+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 33345799999999999999999999999999999999998776655443 32 2356666664 677899999988
No 153
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.56 E-value=1e-05 Score=104.71 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccc
Q 000903 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGIN 692 (1232)
Q Consensus 613 L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GIN 692 (1232)
+.+.|..+...+.++||+....+++..+.+.|....+.. ..-|... .|.+++++|...+.. +|+.|.+..+|||
T Consensus 636 ~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGVD 709 (820)
T PRK07246 636 IAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCCC
Confidence 444444444567789999888999998888887655444 4555433 356799999874443 7899999999999
Q ss_pred cC--CCCEEEEEcCCC
Q 000903 693 LA--TADTVIIYDSDW 706 (1232)
Q Consensus 693 L~--~ad~VIi~D~dW 706 (1232)
++ .+..|||.-.|+
T Consensus 710 ~p~~~~~~viI~kLPF 725 (820)
T PRK07246 710 FVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCeEEEEEecCCC
Confidence 97 356677776554
No 154
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.53 E-value=2.6e-08 Score=117.91 Aligned_cols=49 Identities=45% Similarity=1.065 Sum_probs=43.7
Q ss_pred ccccccccCCCCe---eecCCCCCccccCcCCCCC--CCCCCCCCCCCccCCCC
Q 000903 51 DDSCQACGESENL---MSCDTCTYAYHAKCLVPPL--KAPPSGSWRCPECVSPL 99 (1232)
Q Consensus 51 ~~~C~~C~~~~~l---l~Cd~C~~~~H~~Cl~p~l--~~~p~~~W~C~~C~~~~ 99 (1232)
+++|..|+..|.. +|||+|+++||++||.||+ ..+|.|.|+|++|....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 4599999999875 9999999999999999994 67999999999998643
No 155
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.50 E-value=1.8e-05 Score=104.16 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=65.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHH-H-HHHHH---HH
Q 000903 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-N-WEREF---AT 354 (1232)
Q Consensus 280 ~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~-q-W~~E~---~~ 354 (1232)
.+++.+.||-|.+-++.+...+..+..+++-..+|+|||+..+.-+.........|++|.+++..|. | +.+++ .+
T Consensus 252 ~~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 252 AMPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 4456789999999998888888888888889999999999876555443333446889988876664 3 34443 44
Q ss_pred HcC-CCcEEEEEcChh
Q 000903 355 WAP-QMNVVMYVGTSQ 369 (1232)
Q Consensus 355 ~~p-~~~vv~~~g~~~ 369 (1232)
.+| ++++++..|...
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 443 577777777543
No 156
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.42 E-value=4e-06 Score=89.04 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=42.9
Q ss_pred EeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCC
Q 000903 681 LLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1232)
Q Consensus 681 LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k 725 (1232)
|++|...|.|+++...+.||+||.+-.+..++.+.+|++|.|.+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 789999999999999999999999999999999999999999654
No 157
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.40 E-value=2.6e-05 Score=99.80 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=77.4
Q ss_pred HHHcCceEEEEecchhHHHHHHHHHhhCCCc-EEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCC--C
Q 000903 620 LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--A 696 (1232)
Q Consensus 620 l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~-~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~--a 696 (1232)
+...+.++|||...-.++..+.+.|...... .....|..+ +..+++.|.+...+ .|++.+....+|||++. +
T Consensus 475 ~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l 549 (654)
T COG1199 475 LKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDAL 549 (654)
T ss_pred HhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCe
Confidence 3445558999999999999999999876653 444555544 34899999887765 48999999999999985 5
Q ss_pred CEEEEEcCCCC-hh-----------------------------hHHHHHHhhhhcCCCCceE
Q 000903 697 DTVIIYDSDWN-PH-----------------------------ADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 697 d~VIi~D~dWN-p~-----------------------------~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
..|||.-.||= |. ...|++||+.|--+.+-|.
T Consensus 550 ~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 550 RLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 88999877763 21 2359999999955555544
No 158
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.38 E-value=1.4e-05 Score=96.04 Aligned_cols=139 Identities=20% Similarity=0.333 Sum_probs=92.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH-HHHHHHHhhCCCCCeEEEeCCccH-HHHHHHHHHHcCCCcE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNV 361 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa-ia~l~~l~~~~~~p~LIV~P~sll-~qW~~E~~~~~p~~~v 361 (1232)
.+|-|+|..++.-+ .++..+++..-+..|||+.| .|++..|+... +++.-.|-..| .|=.+|+..=+.+ |
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ--RVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ--RVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhcC--eEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 57999999997544 89999999999999999998 55556665543 78888896555 4556777654433 3
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc----ccccCCCceeEEEEcCc
Q 000903 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIVDEG 437 (1232)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d----~~~l~~i~w~~vIvDEa 437 (1232)
-..+|+-. -.+....+|+|-|+++.. ...++.+.| ||+||.
T Consensus 200 GLMTGDVT---------------------------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEI 244 (1041)
T KOG0948|consen 200 GLMTGDVT---------------------------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEI 244 (1041)
T ss_pred ceeeccee---------------------------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeee
Confidence 33444421 113456789999988653 456677777 999999
Q ss_pred ccccCcccH-HH-HHHHhcc-cccEEEEecC
Q 000903 438 HRLKNKDSK-LF-SSLKQYS-TRHRVLLTGT 465 (1232)
Q Consensus 438 HrlKn~~S~-~~-~~l~~l~-~~~rllLTGT 465 (1232)
|.++....- .+ ..+.-+. .-+-+.||||
T Consensus 245 HYMRDkERGVVWEETIIllP~~vr~VFLSAT 275 (1041)
T KOG0948|consen 245 HYMRDKERGVVWEETIILLPDNVRFVFLSAT 275 (1041)
T ss_pred hhccccccceeeeeeEEeccccceEEEEecc
Confidence 999864321 11 1111222 2345788998
No 159
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.38 E-value=0.00012 Score=91.02 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH-HhhCCCCCeEEEeCC-ccHHHHHHHHHHHc-----CCCcEE
Q 000903 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGERISPHLVVAPL-STLRNWEREFATWA-----PQMNVV 362 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~-l~~~~~~p~LIV~P~-sll~qW~~E~~~~~-----p~~~vv 362 (1232)
|.+-+..+...+..+...++-..+|+|||+..+.-+.. +......++||++|+ .+..|+.+++..+. ..++++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 77777888888888888999999999999987665543 332334699999996 55578888877654 256677
Q ss_pred EEEcCh
Q 000903 363 MYVGTS 368 (1232)
Q Consensus 363 ~~~g~~ 368 (1232)
+..|..
T Consensus 82 ~lkGr~ 87 (636)
T TIGR03117 82 FFPGSQ 87 (636)
T ss_pred EEECCc
Confidence 766654
No 160
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.37 E-value=3.1e-05 Score=93.29 Aligned_cols=241 Identities=18% Similarity=0.250 Sum_probs=133.6
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhhc------CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC-CccHHHH
Q 000903 276 HSPEFLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNW 348 (1232)
Q Consensus 276 ~~P~~~~~~~L~pyQ~~gv~wL~~~~~------~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P-~sll~qW 348 (1232)
..|. +..+-|...|+++|.+...... ..-|.+|.|..|.||--+..++|..-+-.+.++.|.+.- ..+-..-
T Consensus 256 alP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 256 ALPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred eccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccch
Confidence 3454 6668899999999988754432 133578999999998766655555444455556665544 5555566
Q ss_pred HHHHHHHc-CCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc-----
Q 000903 349 EREFATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----- 422 (1232)
Q Consensus 349 ~~E~~~~~-p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~----- 422 (1232)
.+.+.... +.+.|..+..-+ +. + +........+--|+++||..+..+..
T Consensus 335 ERDL~DigA~~I~V~alnK~K------------Ya------------k-Iss~en~n~krGViFaTYtaLIGEs~~~~~k 389 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKFK------------YA------------K-ISSKENTNTKRGVIFATYTALIGESQGKGGK 389 (1300)
T ss_pred hhchhhcCCCCccceehhhcc------------cc------------c-ccccccCCccceeEEEeeHhhhhhccccCch
Confidence 67666554 333332221110 00 0 00111123456799999999976532
Q ss_pred ---ccCC-Cce------eEEEEcCcccccC-------cccHHHHHHHhc----ccccEEEEecCCCCCCHHHHHHHHhhh
Q 000903 423 ---SLKP-IKW------QCMIVDEGHRLKN-------KDSKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFL 481 (1232)
Q Consensus 423 ---~l~~-i~w------~~vIvDEaHrlKn-------~~S~~~~~l~~l----~~~~rllLTGTPlqN~~~EL~~Ll~fL 481 (1232)
.|+. +.| .+||+||||+.|| ..++..+.+..+ ...+.+..|||-- .|--++..+.
T Consensus 390 yrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~ 465 (1300)
T KOG1513|consen 390 YRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMV 465 (1300)
T ss_pred HHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhh
Confidence 1211 234 4888999999999 345666666555 3456778888852 2223333344
Q ss_pred cCCC------CCChHHHHHHHhhhh--hHHHHHHHHHhhhhhhhhhhhhhHhhcCCCcEEEEEeccCCHHHHHHHHHHH
Q 000903 482 DAGK------FGSLEEFQEEFKDIN--QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAIL 552 (1232)
Q Consensus 482 ~p~~------~~~~~~F~~~~~~~~--~~~~~~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il 552 (1232)
..+. |+++.+|........ ..+.+. ..-.++...+-|-. .+-.....+-.|+|+++=++.|..-.
T Consensus 466 RLGlWGegtaf~eF~eFi~AvEkRGvGAMEIVA-MDMK~rGmYiARQL-----SFkgVsFrieEv~ls~eF~k~Yn~a~ 538 (1300)
T KOG1513|consen 466 RLGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVA-MDMKLRGMYIARQL-----SFKGVSFRIEEVPLSKEFRKVYNRAA 538 (1300)
T ss_pred hhccccCCCcCccHHHHHHHHHhcCCceeeeee-hhhhhhhhhhhhhc-----cccCceEEEEecccCHHHHHHHHHHH
Confidence 4444 455555554432110 001111 11112222222211 34445677889999999888887543
No 161
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.33 E-value=6.1e-06 Score=105.07 Aligned_cols=143 Identities=18% Similarity=0.294 Sum_probs=90.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhC-CCCCeEEEeCCccH-HHHHHH---------HHHHcCC--CcEEEEEcChh--
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTL-RNWERE---------FATWAPQ--MNVVMYVGTSQ-- 369 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~-~~~p~LIV~P~sll-~qW~~E---------~~~~~p~--~~vv~~~g~~~-- 369 (1232)
.+..+.++||+|||.+++..+.+|... +...+|||||...+ .....- |....++ ++..+|...+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 467899999999999999999999776 55699999997544 222222 2222222 34445553321
Q ss_pred -HH----HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhccc--c------cC--CCcee----
Q 000903 370 -AR----NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--S------LK--PIKWQ---- 430 (1232)
Q Consensus 370 -~r----~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~--~------l~--~i~w~---- 430 (1232)
.| ..++.+. . .+.......+|+|+|.+++.++.. . +. ..+|+
T Consensus 140 ~gr~~~~~~i~~Fa---~----------------~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~ 200 (986)
T PRK15483 140 SGRKNFPAQLSNFV---K----------------ASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAA 200 (986)
T ss_pred cccccChHHHHHHH---h----------------ccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHh
Confidence 11 1222210 0 000112356899999999976422 1 11 12443
Q ss_pred ---EEEEcCcccccCcccHHHHHHHhcccccEEEEecCCC
Q 000903 431 ---CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1232)
Q Consensus 431 ---~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPl 467 (1232)
+||+||+|++... .+...++..+...+.|.-|||--
T Consensus 201 ~~PivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 201 TRPVVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred CCCEEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecC
Confidence 8999999999662 34668899999999999999963
No 162
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.33 E-value=9.5e-05 Score=91.52 Aligned_cols=160 Identities=20% Similarity=0.224 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC-CCCCeEEEeCC-ccHHHHHHHHH-HH-cCCCcEE
Q 000903 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFA-TW-APQMNVV 362 (1232)
Q Consensus 287 ~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~-~~~p~LIV~P~-sll~qW~~E~~-~~-~p~~~vv 362 (1232)
-.+|.+-+.- ...+..++|...+-.|||...--++...++. ..+-++.|+|. +++.|-..++. ++ ++.+..
T Consensus 513 d~WQ~elLDs----vDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r- 587 (1330)
T KOG0949|consen 513 DEWQRELLDS----VDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR- 587 (1330)
T ss_pred cHHHHHHhhh----hhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc-
Confidence 3478776543 3788889999999999999987777766654 45689999995 66677666654 33 222221
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccc----cCCC-ceeEEEEcCc
Q 000903 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPI-KWQCMIVDEG 437 (1232)
Q Consensus 363 ~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~----l~~i-~w~~vIvDEa 437 (1232)
|..-.-...++|.. ....++|+||-++-+..-.-. ..-+ +..+||+||+
T Consensus 588 ---g~sl~g~ltqEYsi-----------------------np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEV 641 (1330)
T KOG0949|consen 588 ---GVSLLGDLTQEYSI-----------------------NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEV 641 (1330)
T ss_pred ---chhhHhhhhHHhcC-----------------------CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechh
Confidence 11111122233321 234678999999887542111 1111 3479999999
Q ss_pred ccccCc-ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHh
Q 000903 438 HRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1232)
Q Consensus 438 HrlKn~-~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~ 479 (1232)
|.+.|. .+.....+..+...--|.|||| ++|+..+..-++
T Consensus 642 H~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 642 HLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 999885 4667777777777788999999 578877776666
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.32 E-value=3.3e-05 Score=95.98 Aligned_cols=114 Identities=11% Similarity=0.293 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccc
Q 000903 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1232)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTra 686 (1232)
+....+...|+..|. .|++|.|||....+.+++++++...+.++..++|..+..+. +.+ ..+-+++=|.+
T Consensus 266 ~~~~tF~~~L~~~L~-~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARLN-AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHHh-CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 344556666776664 69999999999999999999999999999999987766522 222 33457888999
Q ss_pred cccccccCC--CCEEEEE--cCCCChhh--HHHHHHhhhhcCCCCceEEEE
Q 000903 687 GGLGINLAT--ADTVIIY--DSDWNPHA--DLQAMARAHRLGQTNKVMIFR 731 (1232)
Q Consensus 687 gg~GINL~~--ad~VIi~--D~dWNp~~--~~Qa~gR~hRiGQ~k~V~Vyr 731 (1232)
...|+++-. .|.|..| .....|.. ..|.+||+..+.. +++.||.
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 999998864 5666666 33344554 6899999988874 4455554
No 164
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.27 E-value=5.7e-05 Score=91.07 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=79.9
Q ss_pred eEEEEecchhHHHHHHHHHhh----CCC----cEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCC
Q 000903 626 RVLIYSQFQHMLDLLEDYLTF----KKW----QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (1232)
Q Consensus 626 KvLIFsq~~~~ldiL~~~L~~----~g~----~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad 697 (1232)
-+|||-.-..-.+.+.+.|.. .+- -+.-+.|+.+.++..++ |...+.+..-+++||+.+...|.+...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 688888777666555555543 222 24568999998876544 7766656666899999999999999988
Q ss_pred EEEEEcC------CCCh-----------hhHHHHHHhhhhcCCCCceEEEEEeeCCcH
Q 000903 698 TVIIYDS------DWNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1232)
Q Consensus 698 ~VIi~D~------dWNp-----------~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~Tv 738 (1232)
.|| |+ -||| -.-.||..|++|.|.+.+..+|||.++.-+
T Consensus 337 YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 776 43 2344 245688888888888999999999998766
No 165
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.25 E-value=4.6e-07 Score=76.34 Aligned_cols=49 Identities=41% Similarity=0.650 Sum_probs=41.5
Q ss_pred chhhhhhhccCC--CcceeEEeeeccccccccccccCCcCccHHHHHHHHh
Q 000903 193 TVDRILACRGED--DEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1232)
Q Consensus 193 ~verIi~~r~~~--~~~eyLVKWkgL~Y~e~tWE~~~~~~~~~~~i~~~~~ 241 (1232)
.|++||++|... +..+|||||+|++|.+||||....+......++.|..
T Consensus 4 ~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 469999999766 7899999999999999999998877655677887763
No 166
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.23 E-value=0.00018 Score=91.95 Aligned_cols=89 Identities=16% Similarity=0.254 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhC-CCcEEEEeCCCCHHHHHHHHHHHhcC---CCCceEEEeecccc
Q 000903 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAK---NSSRFCFLLSTRAG 687 (1232)
Q Consensus 612 ~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~eRq~~i~~Fn~~---~s~~~v~LlsTrag 687 (1232)
.+.+.|..+...+.++|||.....+++.+.+.|... ++. +.+.|. ..|.++++.|.+. ..+ .+|++|.+.
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~--~VL~g~~sf 595 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG--SVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC--eEEEEeccc
Confidence 344444444445556888888888888888888642 333 344554 3577889777642 112 368888999
Q ss_pred ccccccCC--CCEEEEEcCCC
Q 000903 688 GLGINLAT--ADTVIIYDSDW 706 (1232)
Q Consensus 688 g~GINL~~--ad~VIi~D~dW 706 (1232)
.+|||++. +..|||.-.|+
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccCCCCceEEEEEEcCCC
Confidence 99999984 78999988776
No 167
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.22 E-value=8.9e-05 Score=94.06 Aligned_cols=129 Identities=19% Similarity=0.268 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHc--CceEEEEecchhHHHHHHHHHh----hCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCce
Q 000903 608 GKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLT----FKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (1232)
Q Consensus 608 ~Kl~~L~klL~~l~~~--g~KvLIFsq~~~~ldiL~~~L~----~~g---~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~ 678 (1232)
-...++..++..+.+. ...+|||-.-..-+..+.+.|. ... +-...++++++..+.+.+ |+.+..+..
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 3455666666666544 3589999887766655555553 333 567789999998777655 888888877
Q ss_pred EEEeeccccccccccCCCCEEE--------EEcCCCC----------hhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHH
Q 000903 679 CFLLSTRAGGLGINLATADTVI--------IYDSDWN----------PHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1232)
Q Consensus 679 v~LlsTragg~GINL~~ad~VI--------i~D~dWN----------p~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE 740 (1232)
-++++|..+..+|++.++-.|| .||+--| -++-.||.|||+| ..+-.+|+|+++.-.+.
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 7899999999999999877665 3444322 2334466555555 67788999999875554
Q ss_pred HH
Q 000903 741 RM 742 (1232)
Q Consensus 741 ~i 742 (1232)
.+
T Consensus 549 ~~ 550 (924)
T KOG0920|consen 549 LM 550 (924)
T ss_pred cc
Confidence 44
No 168
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.18 E-value=6.2e-07 Score=106.76 Aligned_cols=48 Identities=33% Similarity=0.888 Sum_probs=42.8
Q ss_pred ccccccccCCCC---eeecCCCCCc-cccCcCCCCCCCCCCCCCCCCccCCC
Q 000903 51 DDSCQACGESEN---LMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVSP 98 (1232)
Q Consensus 51 ~~~C~~C~~~~~---ll~Cd~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1232)
..-|.+|...+. ||+||.|..+ ||++||+|++..+|-+.|+|+.|...
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 456999987653 9999999999 99999999999999999999999853
No 169
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.16 E-value=7.3e-05 Score=95.08 Aligned_cols=111 Identities=19% Similarity=0.288 Sum_probs=81.3
Q ss_pred CceEEEEecchhHHHHHHHHHhh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEE
Q 000903 624 GHRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1232)
Q Consensus 624 g~KvLIFsq~~~~ldiL~~~L~~----~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~V 699 (1232)
..-+|||-.-..-.+...+.|.. ....++-+.|..+.++..++ |+....++.-+++||+.+..+|++...-.|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34789998887777777777765 45778889999999887764 665555534489999999999999999888
Q ss_pred EEEcC------CCChhhH-----------HHHHHhhhhcCCCCceEEEEEeeCCcHH
Q 000903 700 IIYDS------DWNPHAD-----------LQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1232)
Q Consensus 700 Ii~D~------dWNp~~~-----------~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvE 739 (1232)
| |+ -|||..- ..|..|++|-|.+.+-.+|||.+++..+
T Consensus 336 I--DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 I--DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred e--cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 7 33 2333322 2355566666667789999999987665
No 170
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.11 E-value=7.1e-05 Score=89.27 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEc----CCCCh-----------hhHH
Q 000903 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SDWNP-----------HADL 712 (1232)
Q Consensus 648 g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D----~dWNp-----------~~~~ 712 (1232)
++.+.-|...++.....+ -|+....+..-++++|..+...|.++..-.||=.- .-+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 555666666666554433 37765666666899999999999999988887321 12333 3335
Q ss_pred HHHHhhhhcCCCCceEEEEEeeCCcHHHHHHH
Q 000903 713 QAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1232)
Q Consensus 713 Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~~ 744 (1232)
+|-.|++|.|.+.+-..|||+|+.++...|+.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 66667777777889999999999998888763
No 171
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.03 E-value=1.5e-06 Score=72.04 Aligned_cols=44 Identities=43% Similarity=1.192 Sum_probs=37.5
Q ss_pred ccccccC---CCCeeecCCCCCccccCcCCCCCC--CCCCCCCCCCccC
Q 000903 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLK--APPSGSWRCPECV 96 (1232)
Q Consensus 53 ~C~~C~~---~~~ll~Cd~C~~~~H~~Cl~p~l~--~~p~~~W~C~~C~ 96 (1232)
+|.+|+. .+.+|.|+.|.+.||+.|+.|+.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5888987 456999999999999999999977 4455699999996
No 172
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=98.02 E-value=2.1e-06 Score=72.21 Aligned_cols=49 Identities=37% Similarity=0.630 Sum_probs=41.8
Q ss_pred chhhhhhhc-cCCCcceeEEeeeccccccccccccCCcCccHHHHHHHHh
Q 000903 193 TVDRILACR-GEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1232)
Q Consensus 193 ~verIi~~r-~~~~~~eyLVKWkgL~Y~e~tWE~~~~~~~~~~~i~~~~~ 241 (1232)
.|++|+++| ...+..+|||||+|++|.++||+....+..+...+.+|..
T Consensus 3 ~v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 3 EVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred chheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 389999999 7778889999999999999999988766545777888775
No 173
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.02 E-value=2.7e-05 Score=77.93 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=70.5
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHHcCCCcEEEEEcChhHHHHHHHhhhcC
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 381 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~ 381 (1232)
.++.-.+|-.-+|.|||-..+.-+..-.-....++||+.|.-.+- +|+.+...+..+ -++-..-.+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~-~~~t~~~~~---------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVA---EEMYEALKGLPV-RFHTNARMR---------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHH---HHHHHHTTTSSE-EEESTTSS-----------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHH---HHHHHHHhcCCc-ccCceeeec----------
Confidence 456667888899999999876543322222335999999986663 455554444442 222111100
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHhhc-ccccCCCceeEEEEcCcccccCcccHHHHH-HHhcc-c--
Q 000903 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPIKWQCMIVDEGHRLKNKDSKLFSS-LKQYS-T-- 456 (1232)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d-~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~-l~~l~-~-- 456 (1232)
.....--|-+++|.++... ........|++||+||||-. ...|..... +..+. .
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~ 126 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGE 126 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS
T ss_pred --------------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccC
Confidence 0112344778888887653 22334468999999999963 444443333 22332 1
Q ss_pred ccEEEEecCC
Q 000903 457 RHRVLLTGTP 466 (1232)
Q Consensus 457 ~~rllLTGTP 466 (1232)
...++|||||
T Consensus 127 ~~~i~mTATP 136 (148)
T PF07652_consen 127 AKVIFMTATP 136 (148)
T ss_dssp -EEEEEESS-
T ss_pred eeEEEEeCCC
Confidence 2578999999
No 174
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.98 E-value=1.6e-05 Score=89.98 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=86.0
Q ss_pred CceEEEEecchhHHHHHHHHHhhC---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEE
Q 000903 624 GHRVLIYSQFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1232)
Q Consensus 624 g~KvLIFsq~~~~ldiL~~~L~~~---g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VI 700 (1232)
-.|.||||....-.|-|++++..+ .|+.+.++|...+.+|.+-++.|...+ +.||++|++++.||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d---vkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD---VKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC---eEEEEEehhhhccccccCCceEE
Confidence 469999999999999999999775 468889999999999999999997644 45999999999999999999999
Q ss_pred EEcCCCChhhHHHHHHhhhhc
Q 000903 701 IYDSDWNPHADLQAMARAHRL 721 (1232)
Q Consensus 701 i~D~dWNp~~~~Qa~gR~hRi 721 (1232)
..-.+-..+++.+|+||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 175
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.96 E-value=4.4e-05 Score=87.29 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhhCCC----CCeEEEeCCc-cHHHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLS-TLRNWEREFATW 355 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~-~l~~~~~----~p~LIV~P~s-ll~qW~~E~~~~ 355 (1232)
.+.||.|++-++-+...+..+..+|+-..+|+|||+..+..+. ++..... .+++++++.. .+.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4469999999998988999999999999999999999877664 3343332 2778888753 334445555554
No 176
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.96 E-value=4.4e-05 Score=87.29 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHH-HHhhCCC----CCeEEEeCCc-cHHHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLS-TLRNWEREFATW 355 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~-~l~~~~~----~p~LIV~P~s-ll~qW~~E~~~~ 355 (1232)
.+.||.|++-++-+...+..+..+|+-..+|+|||+..+..+. ++..... .+++++++.. .+.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4469999999998988999999999999999999999877664 3343332 2778888753 334445555554
No 177
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.96 E-value=0.0032 Score=80.82 Aligned_cols=189 Identities=13% Similarity=0.143 Sum_probs=105.1
Q ss_pred cHHHHHHHHHHHHhh----cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCC-CeEEEeCC-ccHHHHHHHHHHHc--CC
Q 000903 287 HPYQLEGLNFLRFSW----SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQ 358 (1232)
Q Consensus 287 ~pyQ~~gv~wL~~~~----~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~-p~LIV~P~-sll~qW~~E~~~~~--p~ 358 (1232)
+-+|-.+++.+...- ..|--+|-...||.|||+.-.=++..|.....| ++-|..=+ ++.-|--+++++=. .+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 348888887764422 234446778899999999988888888777666 55555554 44456666666533 45
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCC----CCchhhhc-----------cccCcc---------c-cccccccccccEEEec
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFP----KNPKKVKK-----------KKSGQV---------V-SESKQDRIKFDVLLTS 413 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~----~~~~~~~~-----------~~~~~~---------~-~~~~~~~~~~~VlIts 413 (1232)
-...|..|+...++.....+--.. .+...... ...+.+ . ...........|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 667888888888776532111000 00000000 000000 0 0011122345789999
Q ss_pred HHHHhhcccccC---------CCceeEEEEcCcccccCcccHHHHHHHh---cccccEEEEecCCCCCCHHHHH
Q 000903 414 YEMINLDSASLK---------PIKWQCMIVDEGHRLKNKDSKLFSSLKQ---YSTRHRVLLTGTPLQNNLDELF 475 (1232)
Q Consensus 414 ye~l~~d~~~l~---------~i~w~~vIvDEaHrlKn~~S~~~~~l~~---l~~~~rllLTGTPlqN~~~EL~ 475 (1232)
.+.+..-...++ .+-=..|||||+|-+-.........+.. .-....++||||--..-...|+
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 888865432222 1223589999999764433322222222 2246789999996444444443
No 178
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.0013 Score=82.77 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeec
Q 000903 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1232)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsT 684 (1232)
....|...+.+-+......|..|||-+..+..-+.|...|...|++...++..-. .|.+-|=.+ ++..+ .+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--cccccc
Confidence 3467889999999999999999999999999999999999999999999988765 333333222 33333 367899
Q ss_pred cccccccccC-CCC----------EEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEE
Q 000903 685 RAGGLGINLA-TAD----------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1232)
Q Consensus 685 ragg~GINL~-~ad----------~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrl 732 (1232)
.-+|+|-++. ..+ .||--.-.=+-.-+.|-.||++|.| ..-...|+|
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~l 542 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYL 542 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhh
Confidence 9999999986 333 4555555556667779999999999 333333433
No 179
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.94 E-value=2e-05 Score=87.96 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=70.3
Q ss_pred HHHHHHhcCCCCceEEEeeccccccccccCCC----C----EEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000903 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATA----D----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1232)
Q Consensus 665 ~~i~~Fn~~~s~~~v~LlsTragg~GINL~~a----d----~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~ 736 (1232)
...+.|+++... ++|-++||+.||.|++- + .-|.++++|+....+|.+||+||.||..+..+..++|.-
T Consensus 52 ~e~~~F~~g~k~---v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD---VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce---EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456789876433 45557999999999953 2 457899999999999999999999999876655566666
Q ss_pred cHHHHHHHHHHHHHHHHHHHh
Q 000903 737 SIEERMMQMTKKKMVLEHLVV 757 (1232)
Q Consensus 737 TvEE~i~~~~~~K~~l~~~v~ 757 (1232)
..|.+......+|+.--.++.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt 149 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALT 149 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 789999988888876544443
No 180
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.80 E-value=2.5e-06 Score=71.98 Aligned_cols=54 Identities=33% Similarity=0.706 Sum_probs=38.5
Q ss_pred ccccccccccccCccCCCCcccccchhhhhhHhhhhccCCCcccccccchhhHHHHhhcChhHHHHHhhhhhh
Q 000903 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1232)
Q Consensus 101 ~iekIL~~R~~p~~~~~~~~~~~~~~~~~~~eYlVKWkg~Sy~h~tW~pe~~L~~~~~~~~~~k~kl~~f~k~ 173 (1232)
.|++||+.|....... ..+|||||+|++|.||||+|++.|... +| ..++.|.++
T Consensus 2 ~Ve~Il~~r~~~~~~~-------------~~~ylVkW~g~~~~~~tWe~~~~l~~~---~~---~li~~f~~r 55 (55)
T PF00385_consen 2 EVERILDHRVVKGGNK-------------VYEYLVKWKGYPYSENTWEPEENLKNC---FP---ELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEETTEES-------------EEEEEEEETTSSGGGEEEEEGGGCSSH---CH---HHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcc-------------cEEEEEEECCCCCCCCeEeeHHHHhHh---hH---HHHHHHhCC
Confidence 3678888874332111 359999999999999999999988643 22 357777653
No 181
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.77 E-value=1.7e-05 Score=79.24 Aligned_cols=29 Identities=45% Similarity=1.039 Sum_probs=26.5
Q ss_pred ccccCcCCCCCCCCCCCCCCCCccCCCCc
Q 000903 72 AYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1232)
Q Consensus 72 ~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 100 (1232)
+||+.||.|||..+|+|+|+||.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 59999999999999999999999997543
No 183
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.77 E-value=0.00065 Score=84.93 Aligned_cols=153 Identities=19% Similarity=0.205 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHH-HHHhhCCCCCeEEEeCCccHHH-HHHHHHHHc--CCCc
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERISPHLVVAPLSTLRN-WEREFATWA--PQMN 360 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l-~~l~~~~~~p~LIV~P~sll~q-W~~E~~~~~--p~~~ 360 (1232)
.|+++|.+.+.- .....++|.|.+..++-|||+.+=.++ ..++. ..+.+|.+.|--.+.+ =..++..+. -+++
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~-~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ 299 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-RRRNVLLILPYVSIVQEKISALSPFSIDLGFP 299 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHH-HhhceeEecceeehhHHHHhhhhhhccccCCc
Confidence 577888887642 222478999999999999999873333 33332 2346788888544433 333344443 1344
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCC----CceeEEEEcC
Q 000903 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP----IKWQCMIVDE 436 (1232)
Q Consensus 361 vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~----i~w~~vIvDE 436 (1232)
|-.|.|.-. |.. ....-+|.|+|.|........|-. ..-.+|||||
T Consensus 300 ve~y~g~~~------------p~~------------------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 300 VEEYAGRFP------------PEK------------------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred chhhcccCC------------CCC------------------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 544543311 110 123456899999988776555422 2346899999
Q ss_pred cccccC--cccHHHHHHHhc----ccc--cEEEEecCCCCCC
Q 000903 437 GHRLKN--KDSKLFSSLKQY----STR--HRVLLTGTPLQNN 470 (1232)
Q Consensus 437 aHrlKn--~~S~~~~~l~~l----~~~--~rllLTGTPlqN~ 470 (1232)
-|-+.. .+..+-..|..+ ... ..++||||-.+|.
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChH
Confidence 999843 333332333222 112 2589999964443
No 184
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.68 E-value=1.4e-05 Score=67.28 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=37.6
Q ss_pred ccccccccccccCccCCCCcccccchhhhhhHhhhhccCCCcccccccchhhHHHHhhcChhHHHHHhhhhh
Q 000903 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (1232)
Q Consensus 101 ~iekIL~~R~~p~~~~~~~~~~~~~~~~~~~eYlVKWkg~Sy~h~tW~pe~~L~~~~~~~~~~k~kl~~f~k 172 (1232)
.+++||+.|.... ....+|||||+|+++.||||+|++.|... ..++..|.+
T Consensus 4 ~ve~Il~~r~~~~--------------~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-------~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD--------------GGEYEYLVKWKGYSYSEDTWEPEENLEDC-------KELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC--------------CCcEEEEEEECCCCCccCccccHHHhCch-------HHHHHHHHh
Confidence 3678888865432 01249999999999999999999998643 246677754
No 185
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.61 E-value=0.00015 Score=85.33 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=78.9
Q ss_pred HcCceEEEEecchhHHHHHHHHHhhCCCc-EEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEE
Q 000903 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1232)
Q Consensus 622 ~~g~KvLIFsq~~~~ldiL~~~L~~~g~~-~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VI 700 (1232)
..|.-|+-||--. .=.+...+..+|.. .+.|.|+.+++.|.+.-..||++.++ +-+|++|+|.|.|+||. .++||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e-~dvlVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNE-CDVLVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCc-cceEEeecccccccccc-eeEEE
Confidence 3588999998642 22344455556655 99999999999999999999987665 44899999999999994 78899
Q ss_pred EEcCC---------CChhhHHHHHHhhhhcCCC
Q 000903 701 IYDSD---------WNPHADLQAMARAHRLGQT 724 (1232)
Q Consensus 701 i~D~d---------WNp~~~~Qa~gR~hRiGQ~ 724 (1232)
|++.- -...+..|.-|||+|.|.+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 98764 3456778999999999876
No 186
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.60 E-value=0.0021 Score=77.24 Aligned_cols=84 Identities=23% Similarity=0.219 Sum_probs=59.0
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCCCCEEEEEcCCC------Ch--------------
Q 000903 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NP-------------- 708 (1232)
Q Consensus 649 ~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VIi~D~dW------Np-------------- 708 (1232)
+-++-|..+.+.+...++ |...+.+..-++|+|..+...|.+.....|| ||.+ ||
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 446678888887766555 6655555556899999999999999888776 6654 33
Q ss_pred hhHHHHHHhhhhcCCCCceEEEEEeeCCcHHH
Q 000903 709 HADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1232)
Q Consensus 709 ~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE 740 (1232)
+.-.||-|||+|.| +-.+|||.|.-+++.
T Consensus 582 AsA~QRaGRAGRtg---PGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG---PGKCFRLYTAWAYEH 610 (902)
T ss_pred hhhhhhccccCCCC---CCceEEeechhhhhh
Confidence 23456666666655 667899999766544
No 187
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.59 E-value=0.00041 Score=76.20 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=46.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCc-eEEEcCCCCcHHHHHHHHHHHHh-------hCCCCCeEEEeCC-ccHHHHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLF-------GERISPHLVVAPL-STLRNWEREFAT 354 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~-~ILaDemGLGKTiqaia~l~~l~-------~~~~~p~LIV~P~-sll~qW~~E~~~ 354 (1232)
+|.+.|..++..+ ..... +++....|+|||.+..+++..+. ....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4778999998655 44555 88999999999988888877773 2344599999995 666777666666
No 188
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.54 E-value=4.3e-05 Score=81.52 Aligned_cols=47 Identities=36% Similarity=1.041 Sum_probs=39.4
Q ss_pred cccccccccccCC--CCeeecCC--CCC-ccccCcCCCCCCCCCCCCCCCCccCC
Q 000903 48 DAKDDSCQACGES--ENLMSCDT--CTY-AYHAKCLVPPLKAPPSGSWRCPECVS 97 (1232)
Q Consensus 48 ~~~~~~C~~C~~~--~~ll~Cd~--C~~-~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1232)
+....+| -|++. |.|+-||+ |.+ .||+.|+ .|..+|.|.|+|++|..
T Consensus 218 e~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYC-FCQQVSYGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEE-EecccccccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 4456788 57765 78999995 986 4999999 89999999999999974
No 189
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.51 E-value=3.2e-05 Score=88.60 Aligned_cols=49 Identities=45% Similarity=1.027 Sum_probs=42.5
Q ss_pred cccccccccccCCCC---eeecCCCCCccccCcCCCCCCCCCCCC----CCCCccC
Q 000903 48 DAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGS----WRCPECV 96 (1232)
Q Consensus 48 ~~~~~~C~~C~~~~~---ll~Cd~C~~~~H~~Cl~p~l~~~p~~~----W~C~~C~ 96 (1232)
......|.+|....+ |+.||+|...||+.||.|||...|... |.|.+|.
T Consensus 541 ~a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 541 KAMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred cccceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 344578999998765 899999999999999999999998654 9999994
No 190
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.38 E-value=7.8e-05 Score=80.02 Aligned_cols=51 Identities=25% Similarity=0.629 Sum_probs=42.2
Q ss_pred hccccccccccccccCCC---CeeecCCCCCccccCcCCCCCCCCCCCCCCCC-ccC
Q 000903 44 IVRIDAKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCP-ECV 96 (1232)
Q Consensus 44 ~~~~~~~~~~C~~C~~~~---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~-~C~ 96 (1232)
.+........|.+|+++. .+++||.|+|+||..|+ .|...|.|.|.|. .|.
T Consensus 307 Y~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 307 YFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICDMRCR 361 (381)
T ss_pred cchhhcccHhhhccCCcccchheeccccccCCCCcccc--ccccccCccchhhhHHH
Confidence 344445667899999864 49999999999999999 8999999999997 354
No 191
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.37 E-value=7.4e-05 Score=84.37 Aligned_cols=45 Identities=31% Similarity=0.835 Sum_probs=37.7
Q ss_pred cccccc-ccCCCCeeecCC--CC-CccccCcCCCCCCCCCCCCCCCCccCC
Q 000903 51 DDSCQA-CGESENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1232)
Q Consensus 51 ~~~C~~-C~~~~~ll~Cd~--C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1232)
..+|.+ |...|.|+-||. |+ ..||+.|+ .|...|.|.|+||.|..
T Consensus 219 ~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 219 PTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKA 267 (274)
T ss_pred CEEEEecccccccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhh
Confidence 345533 445688999997 99 89999999 88999999999999985
No 192
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.34 E-value=0.0051 Score=71.61 Aligned_cols=62 Identities=31% Similarity=0.390 Sum_probs=49.5
Q ss_pred EEEeeccccccccccCCCCEEEEEcCCC------C-----------hhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHH
Q 000903 679 CFLLSTRAGGLGINLATADTVIIYDSDW------N-----------PHADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1232)
Q Consensus 679 v~LlsTragg~GINL~~ad~VIi~D~dW------N-----------p~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~ 741 (1232)
.+++||..+...+.+.+.-.|| ||.+ | |..-.||..|++|.|.+++-..|+|+|+..++..
T Consensus 315 kvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~e 392 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKE 392 (699)
T ss_pred eEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhc
Confidence 3789999999988888766665 5543 4 4456799999999999999999999998766654
Q ss_pred H
Q 000903 742 M 742 (1232)
Q Consensus 742 i 742 (1232)
+
T Consensus 393 m 393 (699)
T KOG0925|consen 393 M 393 (699)
T ss_pred C
Confidence 4
No 193
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=97.28 E-value=4.4e-05 Score=84.68 Aligned_cols=38 Identities=42% Similarity=0.713 Sum_probs=31.0
Q ss_pred cccccccccccCccCCCCcccccchhhhhhHhhhhccCCCcccccccchhhHHH
Q 000903 102 IDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLK 155 (1232)
Q Consensus 102 iekIL~~R~~p~~~~~~~~~~~~~~~~~~~eYlVKWkg~Sy~h~tW~pe~~L~~ 155 (1232)
+|.||..|++... .||||||+|||+.||||+|++++..
T Consensus 13 aEsIlkkRirKGr----------------vEYlVKWkGWs~kyNTWEPEENILD 50 (369)
T KOG2748|consen 13 AESILKKRIRKGR----------------VEYLVKWKGWSQKYNTWEPEENILD 50 (369)
T ss_pred HHHHHHHHhhccc----------------eEEEEEecccccccCccCccccccC
Confidence 4667766665543 3999999999999999999999874
No 194
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.26 E-value=0.0033 Score=70.53 Aligned_cols=122 Identities=19% Similarity=0.132 Sum_probs=75.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH----HHHHHHHHHHcCC
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll----~qW~~E~~~~~p~ 358 (1232)
|..+++-|+-|+--| ..|-|.-..+|=|||+++.. ++++..-...++=||+.+..| .+|...|-.++ +
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l-~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAAL-PAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHH-HHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHH-HHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 456777888876434 34559999999999998743 344444333588888998887 45888888888 7
Q ss_pred CcEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc---------ccccCCCce
Q 000903 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d---------~~~l~~i~w 429 (1232)
+.+-...+........ .....+|+-+|-..+.-| ......-.+
T Consensus 147 lsv~~~~~~~~~~~r~----------------------------~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 147 LSVGIITSDMSSEERR----------------------------EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp --EEEEETTTEHHHHH----------------------------HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred hccccCccccCHHHHH----------------------------HHHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 7777776654321111 123567888877776543 111123467
Q ss_pred eEEEEcCcccc
Q 000903 430 QCMIVDEGHRL 440 (1232)
Q Consensus 430 ~~vIvDEaHrl 440 (1232)
+++||||+..+
T Consensus 199 ~~~ivDEvDs~ 209 (266)
T PF07517_consen 199 DFAIVDEVDSI 209 (266)
T ss_dssp SEEEECTHHHH
T ss_pred CEEEEeccceE
Confidence 89999999765
No 195
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00053 Score=83.52 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=49.7
Q ss_pred HHHHhcCCCCceEEEeeccccccccccCCCCEEE--------EEcC---------CC-ChhhHHHHHHhhhhcCCCCceE
Q 000903 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI--------IYDS---------DW-NPHADLQAMARAHRLGQTNKVM 728 (1232)
Q Consensus 667 i~~Fn~~~s~~~v~LlsTragg~GINL~~ad~VI--------i~D~---------dW-Np~~~~Qa~gR~hRiGQ~k~V~ 728 (1232)
+.-|...+.+...++++|.++...|+++..-.|| .||+ +| +-+.--||-|||+|+| +-+
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCc
Confidence 3457777777777899999999999999998887 3444 34 3344568888888877 567
Q ss_pred EEEEeeC
Q 000903 729 IFRLITR 735 (1232)
Q Consensus 729 Vyrlvt~ 735 (1232)
.|||++.
T Consensus 697 cYRLYSS 703 (1172)
T KOG0926|consen 697 CYRLYSS 703 (1172)
T ss_pred eeehhhh
Confidence 8888764
No 196
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.05 E-value=0.00025 Score=85.27 Aligned_cols=90 Identities=26% Similarity=0.602 Sum_probs=60.8
Q ss_pred cccccccccCC-----CCeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCCCcccccccccccccCccCCCCccccc
Q 000903 50 KDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLG 124 (1232)
Q Consensus 50 ~~~~C~~C~~~-----~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekIL~~R~~p~~~~~~~~~~~~ 124 (1232)
++..|-+|..+ .+|++||.|.-..|+.|. .+..+|++.|.|..|.-.. -...+- .|..-+.-.....+
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Calg~--~ppCvL---CPkkGGamK~~~sg 342 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCALGI--EPPCVL---CPKKGGAMKPTKSG 342 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhccccC--CCCeee---ccccCCcccccCCC
Confidence 56789999876 249999999999999999 8889999999999998431 112222 23332221111112
Q ss_pred chhhhhhHhhhhccCCCcccc-cccchhhHHHHhhc
Q 000903 125 SKQIFVKQYLVKWKGLSYLHC-TWVPEKEFLKAFKS 159 (1232)
Q Consensus 125 ~~~~~~~eYlVKWkg~Sy~h~-tW~pe~~L~~~~~~ 159 (1232)
. + |+|.-| -|+||-.+.+..++
T Consensus 343 T----------~---wAHvsCALwIPEVsie~~ekm 365 (893)
T KOG0954|consen 343 T----------K---WAHVSCALWIPEVSIECPEKM 365 (893)
T ss_pred C----------e---eeEeeeeeccceeeccCHhhc
Confidence 2 3 455556 79999988776443
No 197
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=96.98 E-value=0.00035 Score=58.68 Aligned_cols=36 Identities=44% Similarity=0.956 Sum_probs=28.4
Q ss_pred hHhhhhccCCCcccccccchhhHHHHhhcChhHHHHHhhhhhh
Q 000903 131 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1232)
Q Consensus 131 ~eYlVKWkg~Sy~h~tW~pe~~L~~~~~~~~~~k~kl~~f~k~ 173 (1232)
.+|||||+|+++.+|||+|.+.|... ...+.+|.++
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~~~-------~~~v~~~~~~ 53 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLLNC-------SKKLDNYKKK 53 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHHHH-------HHHHHHHHHh
Confidence 48999999999999999999998631 1356666543
No 198
>PRK10536 hypothetical protein; Provisional
Probab=96.96 E-value=0.0044 Score=68.72 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=83.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh-hCCCCCeEEEeCCccHHHHHHHHHHHcCCCcEEEE
Q 000903 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~-~~~~~p~LIV~P~sll~qW~~E~~~~~p~~~vv~~ 364 (1232)
....|...+.+| ..+..+++.-+.|+|||..++++..... ......++|+=|.-.. .|.-.|.|
T Consensus 60 ~n~~Q~~~l~al----~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLP------- 124 (262)
T PRK10536 60 RNEAQAHYLKAI----ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLP------- 124 (262)
T ss_pred CCHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCC-------
Confidence 556888888877 3456888999999999999999888654 4333345554443322 23333343
Q ss_pred EcChhHHH------HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcc
Q 000903 365 VGTSQARN------IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 365 ~g~~~~r~------~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaH 438 (1232)
|+..+.- +....+..+... .... .. ....-.|-|.+...++. ..+.-++|||||||
T Consensus 125 -G~~~eK~~p~~~pi~D~L~~~~~~~--~~~~-----~~-----~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaq 186 (262)
T PRK10536 125 -GDIAEKFAPYFRPVYDVLVRRLGAS--FMQY-----CL-----RPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQ 186 (262)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChH--HHHH-----HH-----HhccCcEEEecHHHhcC-----CcccCCEEEEechh
Confidence 2221110 000111100000 0000 00 00012255555554432 22344789999999
Q ss_pred cccCcccHHHHHHHhcccccEEEEecCCCCCC
Q 000903 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~ 470 (1232)
++.- ..+...+..+....+++++|-|-|.+
T Consensus 187 n~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 187 NVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred cCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 8754 45556667788889999999997665
No 199
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.87 E-value=0.0007 Score=87.18 Aligned_cols=62 Identities=27% Similarity=0.714 Sum_probs=48.1
Q ss_pred ccccccccccCCC-----CeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCCCcccccccccccccCcc
Q 000903 49 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVA 115 (1232)
Q Consensus 49 ~~~~~C~~C~~~~-----~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekIL~~R~~p~~~ 115 (1232)
..+..|.+|.++. .+|.||.|..++|++|.. ...+|+|.|.|..|.-.+... +.|-+.|...
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~---v~c~~cp~~~ 283 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP---VRCLLCPSKG 283 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcc---cceEeccCCC
Confidence 4567899998764 399999999999999996 566899999999999766444 4444455544
No 200
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.81 E-value=0.00053 Score=78.82 Aligned_cols=69 Identities=30% Similarity=0.701 Sum_probs=52.8
Q ss_pred hhccccccccccccccCCCC-----eeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCCCcccccccccccccCccC
Q 000903 43 RIVRIDAKDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAG 116 (1232)
Q Consensus 43 ~~~~~~~~~~~C~~C~~~~~-----ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekIL~~R~~p~~~~ 116 (1232)
.+..+|.-++.|.+|..... ++.||+|.-+.|..|. .+..+|+|.|+|..|.-... .+..|-+.|...+
T Consensus 185 pi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~~---~i~~C~fCps~dG 258 (669)
T COG5141 185 PIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGEY---QIRCCSFCPSSDG 258 (669)
T ss_pred ccCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhccccc---ceeEEEeccCCCC
Confidence 34444556788999986543 9999999999999999 77789999999999986553 4555666676543
No 201
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.80 E-value=0.00057 Score=85.62 Aligned_cols=47 Identities=36% Similarity=0.880 Sum_probs=45.0
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCC
Q 000903 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1232)
Q Consensus 51 ~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1232)
++.|.+|++.++++||.+|++.||..|..||+.+.|+..|.|-.|..
T Consensus 344 ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 57899999999999999999999999999999999999999999984
No 202
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=96.77 E-value=0.00063 Score=81.57 Aligned_cols=48 Identities=35% Similarity=0.983 Sum_probs=42.8
Q ss_pred ccccccccccCCCC---eeecCCCCCccccCcCCCCCCCCCCCCCCCCccC
Q 000903 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1232)
Q Consensus 49 ~~~~~C~~C~~~~~---ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 96 (1232)
...-.|..|+.+|+ ++.|+.|+-+||-+|..|+...+|.+.|+|+.|.
T Consensus 66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred CCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 34577888887765 8999999999999999999999999999999886
No 203
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.75 E-value=0.0081 Score=70.83 Aligned_cols=133 Identities=16% Similarity=0.214 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHh----hCCC----cEEEEeCCCCHHHHHHHHHHHhcCCCCc
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKW----QYERIDGKVGGAERQIRIDRFNAKNSSR 677 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~----~~g~----~~~ridG~~~~~eRq~~i~~Fn~~~s~~ 677 (1232)
.+.|+....+++..+...|-|+|-||...+..+++-...+ .-|- .+..+.|+-+.++|.++-...- .+.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F---~G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF---GGK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---CCe
Confidence 5678888888999999999999999998886555433222 1111 2334678888888888766542 345
Q ss_pred eEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCcHHHHHH
Q 000903 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (1232)
Q Consensus 678 ~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ~k~V~Vyrlvt~~TvEE~i~ 743 (1232)
.+-+++|.|..+||++...|.|+.+..|.+-+++.|..|||+|-.... ..| +.+..+.||..-+
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~S-Lav-yva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPS-LAV-YVAFLGPVDQYYM 647 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCc-eEE-EEEeccchhhHhh
Confidence 668999999999999999999999999999999999999999965332 222 2344556776543
No 204
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.69 E-value=0.00039 Score=93.11 Aligned_cols=51 Identities=33% Similarity=0.918 Sum_probs=45.6
Q ss_pred ccccccccccCCC---CeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCCC
Q 000903 49 AKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1232)
Q Consensus 49 ~~~~~C~~C~~~~---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1232)
.....|.+|...+ .++.|+.|..+||+.|+.|.+...|.++|+||.|....
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4567899998754 39999999999999999999999999999999999654
No 205
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.68 E-value=0.0063 Score=75.53 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=56.7
Q ss_pred eEEEeeccccccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcC--CC-CceE-----EEEEeeCCcHHHHHHHHHHHH
Q 000903 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QT-NKVM-----IFRLITRGSIEERMMQMTKKK 749 (1232)
Q Consensus 678 ~v~LlsTragg~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiG--Q~-k~V~-----Vyrlvt~~TvEE~i~~~~~~K 749 (1232)
..||.|--|+-+|-+-|.+=+++=+-+.-|-..-+|-+||..|+- |. ..|+ +++|..--.-+|+=+-.+-.|
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lqk 563 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQK 563 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHHH
Confidence 348999999999999999999999999999999999999999975 22 3444 444433222233333344445
Q ss_pred HHHHHHHhc
Q 000903 750 MVLEHLVVG 758 (1232)
Q Consensus 750 ~~l~~~v~g 758 (1232)
...++..++
T Consensus 564 EI~~~s~i~ 572 (985)
T COG3587 564 EINDESFIK 572 (985)
T ss_pred HHHHhhhhc
Confidence 555555543
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.52 E-value=0.013 Score=63.16 Aligned_cols=149 Identities=22% Similarity=0.271 Sum_probs=68.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeCCccHHHHHHHHHHHcCCCcEEEE
Q 000903 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P~sll~qW~~E~~~~~p~~~vv~~ 364 (1232)
+-+.|...++-|. +..-+++.-..|+|||+.|++....+...+ ..+++|+-|..-. .+++. +.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~---~~~lG-flp------- 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA---GEDLG-FLP------- 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T---T-----SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC---ccccc-cCC-------
Confidence 4568999988774 667789999999999999999888777654 3577777776533 12221 112
Q ss_pred EcChhH------HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcc
Q 000903 365 VGTSQA------RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1232)
Q Consensus 365 ~g~~~~------r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaH 438 (1232)
|+..+ +......+..+....-.. -...-.|-+.+...++. ..+...+||||||+
T Consensus 70 -G~~~eK~~p~~~p~~d~l~~~~~~~~~~~--------------~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQ 129 (205)
T PF02562_consen 70 -GDLEEKMEPYLRPIYDALEELFGKEKLEE--------------LIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQ 129 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHHH--------------HHHTTSEEEEEGGGGTT-------B-SEEEEE-SGG
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHhHHH--------------HhhcCeEEEEehhhhcC-----ccccceEEEEeccc
Confidence 11111 111111111111110000 00111233333332221 23455899999999
Q ss_pred cccCcccHHHHHHHhcccccEEEEecCCCCCCH
Q 000903 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1232)
Q Consensus 439 rlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~ 471 (1232)
++.. ..+...+.++....++.++|-|-|.+.
T Consensus 130 N~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 130 NLTP--EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp G--H--HHHHHHHTTB-TT-EEEEEE-------
T ss_pred CCCH--HHHHHHHcccCCCcEEEEecCceeecC
Confidence 7643 344455667778899999999977664
No 207
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=96.45 E-value=0.0026 Score=72.06 Aligned_cols=57 Identities=32% Similarity=0.398 Sum_probs=49.2
Q ss_pred CccchhhhhhhccCCCcceeEEeeeccccccccccccCCcCccHHHHHHHHhhhhcc
Q 000903 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRS 246 (1232)
Q Consensus 190 ~~~~verIi~~r~~~~~~eyLVKWkgL~Y~e~tWE~~~~~~~~~~~i~~~~~~~~~~ 246 (1232)
+...|++|+++|...|..+|||||+|.|=.+.|||.+.+...+.+.|+.|..-....
T Consensus 47 ~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~ 103 (270)
T KOG1911|consen 47 EEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKL 103 (270)
T ss_pred chhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhccc
Confidence 445899999999888889999999999999999999886677899999999865443
No 208
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.31 E-value=0.0013 Score=77.42 Aligned_cols=52 Identities=27% Similarity=0.653 Sum_probs=41.6
Q ss_pred cccccccCCC-----CeeecCCCCCccccCcCCCCCCC----CCCCCCCCCccCCCCcccc
Q 000903 52 DSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLNDID 103 (1232)
Q Consensus 52 ~~C~~C~~~~-----~ll~Cd~C~~~~H~~Cl~p~l~~----~p~~~W~C~~C~~~~~~ie 103 (1232)
..|.+|+.++ .||.|+.|...||..|+.|+... -+...|+|..|......+.
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 4499998654 39999999999999999998754 3567899999997654443
No 209
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.18 E-value=0.005 Score=61.36 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=26.8
Q ss_pred eEEEEcCcccccCcccHHHHHHHhc--ccccEEEEecCC
Q 000903 430 QCMIVDEGHRLKNKDSKLFSSLKQY--STRHRVLLTGTP 466 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~~l--~~~~rllLTGTP 466 (1232)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25555556555 466789999999
No 210
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.18 E-value=0.008 Score=72.44 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=62.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCc-cHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~s-ll~qW~~E~~~~~p~~~vv 362 (1232)
.+|---|..||.-. -++.=.||.-..|+|||+++.+++.+|.....+|+||++|.. .+.|-..-|.+- .++|+
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t--gLKVv 482 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT--GLKVV 482 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc--CceEe
Confidence 46888999999776 455668999999999999999999999988888999999965 557777777664 47777
Q ss_pred EEEc
Q 000903 363 MYVG 366 (1232)
Q Consensus 363 ~~~g 366 (1232)
-+..
T Consensus 483 Rl~a 486 (935)
T KOG1802|consen 483 RLCA 486 (935)
T ss_pred eeeh
Confidence 6654
No 211
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.06 E-value=0.0026 Score=76.18 Aligned_cols=84 Identities=31% Similarity=0.721 Sum_probs=58.5
Q ss_pred ccccccCC----CC-eeecC--CCCCccccCcCCCCCCCCCCCCCCCCccCCCCcccccccccccccCccCCCCcccccc
Q 000903 53 SCQACGES----EN-LMSCD--TCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGS 125 (1232)
Q Consensus 53 ~C~~C~~~----~~-ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekIL~~R~~p~~~~~~~~~~~~~ 125 (1232)
-|.||.+. ++ |+.|| .|.-+.|+.|. .+..+|.|.|||..|..-..-. -+.|.+.|-+++..+-.+
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCesqeraa--rvrCeLCP~kdGALKkTD--- 79 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCESQERAA--RVRCELCPHKDGALKKTD--- 79 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhhhhhhc--cceeecccCcccceeccc---
Confidence 47789753 23 99999 49999999999 7889999999999998643222 256777777654322111
Q ss_pred hhhhhhHhhhhccCCCcccc-cccchhhHH
Q 000903 126 KQIFVKQYLVKWKGLSYLHC-TWVPEKEFL 154 (1232)
Q Consensus 126 ~~~~~~eYlVKWkg~Sy~h~-tW~pe~~L~ 154 (1232)
--||.|.-| -++||..+-
T Consensus 80 -----------n~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 80 -----------NGGWAHVVCALYIPEVRFG 98 (900)
T ss_pred -----------CCCceEEEEEeeccceeec
Confidence 125777766 567776553
No 212
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.04 E-value=0.013 Score=61.52 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=55.3
Q ss_pred HHcCceEEEEecchhHHHHHHHHHhhCCC--cEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc--ccccccccCC-
Q 000903 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR--AGGLGINLAT- 695 (1232)
Q Consensus 621 ~~~g~KvLIFsq~~~~ldiL~~~L~~~g~--~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr--agg~GINL~~- 695 (1232)
...+.++|||.+.-..++.+.+++...+. .+..+.- +...+..++++|..... .+|+++. ...+|||++.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--ECE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCCCc
Confidence 34567999999999999999999976542 1111221 34578899999988544 3677777 8899999984
Q ss_pred -CCEEEEEcCCC
Q 000903 696 -ADTVIIYDSDW 706 (1232)
Q Consensus 696 -ad~VIi~D~dW 706 (1232)
+..||+.-.|+
T Consensus 81 ~~r~vii~glPf 92 (167)
T PF13307_consen 81 LLRAVIIVGLPF 92 (167)
T ss_dssp SEEEEEEES---
T ss_pred hhheeeecCCCC
Confidence 88999988886
No 213
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.97 E-value=0.038 Score=70.11 Aligned_cols=125 Identities=11% Similarity=0.031 Sum_probs=84.7
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCchhhhcc
Q 000903 313 MGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK 391 (1232)
Q Consensus 313 mGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~~~~~~ 391 (1232)
.|.|||-..+.++...+..+. .+||++|. +++.|+...|...+++..++++|+.....+..+.+.-.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~----------- 236 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV----------- 236 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH-----------
Confidence 399999999999988877653 69999995 78899999999999767899999877665544443211
Q ss_pred ccCccccccccccccccEEEecHHHHhhcccccCCC-ceeEEEEcCcccc--cCcccHHH----HH-HH-hcccccEEEE
Q 000903 392 KSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI-KWQCMIVDEGHRL--KNKDSKLF----SS-LK-QYSTRHRVLL 462 (1232)
Q Consensus 392 ~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i-~w~~vIvDEaHrl--Kn~~S~~~----~~-l~-~l~~~~rllL 462 (1232)
......|||-|...+ |-.+ +..+|||||=|.- |...+..+ -+ ++ .......+|-
T Consensus 237 -----------~~G~~~IViGtRSAv------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLg 299 (665)
T PRK14873 237 -----------LRGQARVVVGTRSAV------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIG 299 (665)
T ss_pred -----------hCCCCcEEEEcceeE------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 124567898887544 2222 4579999999864 33222111 11 11 1223456777
Q ss_pred ecCC
Q 000903 463 TGTP 466 (1232)
Q Consensus 463 TGTP 466 (1232)
|+||
T Consensus 300 SaTP 303 (665)
T PRK14873 300 GHAR 303 (665)
T ss_pred CCCC
Confidence 9999
No 214
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.94 E-value=0.027 Score=66.56 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=33.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhC-CCCCeEEEeCCccHHHHHHH
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWERE 351 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~-~~~p~LIV~P~sll~qW~~E 351 (1232)
.|+--..|+|||+.++.++..+... .....+++|++..+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHH
Confidence 5677789999999999999988222 22477888888777665443
No 215
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.92 E-value=0.015 Score=68.27 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCC-C-CeEEEeCC
Q 000903 277 SPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-S-PHLVVAPL 342 (1232)
Q Consensus 277 ~P~~~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~-~-p~LIV~P~ 342 (1232)
-|.+++-...+|-|.+-..-+......+++|+|-+..|+|||+.-++++.+.....+ . .-||-|..
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 344555567899999988888888999999999999999999999888766544333 2 44666653
No 216
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.86 E-value=0.0064 Score=68.05 Aligned_cols=50 Identities=32% Similarity=0.357 Sum_probs=43.4
Q ss_pred cchhhhhhhccCCCcceeEEeeeccccccccccccCCcCccHHHHHHHHhh
Q 000903 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1232)
Q Consensus 192 ~~verIi~~r~~~~~~eyLVKWkgL~Y~e~tWE~~~~~~~~~~~i~~~~~~ 242 (1232)
..+|-||-.|..-|..||||||+|-.--..|||.++.|.+ .-+|..|..+
T Consensus 11 fAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILD-pRLi~AFe~r 60 (369)
T KOG2748|consen 11 FAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILD-PRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHHhhccceEEEEEecccccccCccCccccccC-HHHHHHHHhh
Confidence 3688999999888999999999999999999999998864 5678888764
No 217
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.70 E-value=0.11 Score=56.04 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll 345 (1232)
+|-+-|.+++..+.. ...+-.+|.-..|+|||.....+...+...+ .++++++|....
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHH
Confidence 477899999987732 2334477888999999987666555555543 689999997644
No 218
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.54 E-value=0.0053 Score=81.37 Aligned_cols=179 Identities=26% Similarity=0.391 Sum_probs=98.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCc--HHHHHHHHHHHHhhCC-CCCeEEEeCCccHHHHHHHHHHHcCCCcE
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLG--KTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLG--KTiqaia~l~~l~~~~-~~p~LIV~P~sll~qW~~E~~~~~p~~~v 361 (1232)
.+.++|.....-... .......++++.|+| ||+.+..+........ ....++++|..+..+|..+...++ ....
T Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLN--ELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKF-NIRL 160 (866)
T ss_pred ccCcchhhhhhhhhh--hhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhc-cccc
Confidence 455666655432211 122238899999999 8998877766655443 358899999888899999987653 1111
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhc----ccccCCCce---eEEEE
Q 000903 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKW---QCMIV 434 (1232)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d----~~~l~~i~w---~~vIv 434 (1232)
.+..-... +........+. .......++.+.+..... ...+....| +++++
T Consensus 161 ~~~~~~~~-~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (866)
T COG0553 161 AVLDKEGL-RYLLKQYDAYN---------------------PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVI 218 (866)
T ss_pred hhhhhhhh-hhhhhhhcccc---------------------cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhc
Confidence 11110000 00000000000 000000033344433332 222334456 89999
Q ss_pred cCcccccCcc---------cHHHHHHHhccc--------ccEEEEecCCCCCCHHHHHHHHhhhcCCCCCC
Q 000903 435 DEGHRLKNKD---------SKLFSSLKQYST--------RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1232)
Q Consensus 435 DEaHrlKn~~---------S~~~~~l~~l~~--------~~rllLTGTPlqN~~~EL~~Ll~fL~p~~~~~ 488 (1232)
||+|.+.+.. ...+..+..... ....++++||.+....+++...+++.+..+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 219 DEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred chHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 9999987742 233333333321 12348899999999888888777777766655
No 219
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.34 E-value=0.071 Score=67.75 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=55.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCc-cHHHHHHHHHHHcCCCcEE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQMNVV 362 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~s-ll~qW~~E~~~~~p~~~vv 362 (1232)
..|-+.|..+|.... ......++-...|+|||.+++.++..+...+. ++||++|.. .+.+....+... +.+++
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~~--~~~vv 229 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLALC--DQKIV 229 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHhC--CCcEE
Confidence 568999999997652 33467889999999999999998888776543 899999965 456666666543 34444
Q ss_pred EE
Q 000903 363 MY 364 (1232)
Q Consensus 363 ~~ 364 (1232)
-+
T Consensus 230 Rl 231 (637)
T TIGR00376 230 RL 231 (637)
T ss_pred Ee
Confidence 43
No 220
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.08 E-value=0.035 Score=67.06 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=49.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWERE 351 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E 351 (1232)
..|-+-|..++.+.. .+..-.++--..|+|||.+.+-++..+...+ ..+||.+|. -.+.|-...
T Consensus 184 ~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHHH
Confidence 457789999998873 2235578888999999999988888877665 589999996 455666554
No 221
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.59 E-value=0.25 Score=63.88 Aligned_cols=65 Identities=23% Similarity=0.160 Sum_probs=48.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC-CCCeEEEeCCccHHHHHHH
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~-~~p~LIV~P~sll~qW~~E 351 (1232)
+..|.+-|.+++..+ ..+.-.+|.-..|+|||..+-+++..+...+ ..++++++|...-.....+
T Consensus 321 ~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 457999999999866 3456789999999999988877777665543 2478889998766554443
No 222
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.58 E-value=0.29 Score=48.67 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=28.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHH
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~ 346 (1232)
+...+|.-+.|.|||..+-.++..+... ..+++++.......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~ 60 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLE 60 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhh
Confidence 6678899999999998777776666422 23555555444333
No 223
>PLN03025 replication factor C subunit; Provisional
Probab=94.29 E-value=0.52 Score=54.93 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.1
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
.+.||..+.|+|||..+.+++..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 458999999999999999998887543
No 224
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.06 E-value=0.13 Score=66.62 Aligned_cols=110 Identities=25% Similarity=0.338 Sum_probs=77.2
Q ss_pred hhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH-----HHHHHHHHHHcCCCcEEEEEcChhHHHHH
Q 000903 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNII 374 (1232)
Q Consensus 300 ~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll-----~qW~~E~~~~~p~~~vv~~~g~~~~r~~i 374 (1232)
.+..+.+++++...|+|||+.|-- +.+.....+.+.-++|...+ .-|...|... .++.++...|...---.
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~--a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lk- 1230 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAEL--ALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLK- 1230 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHH--HhcCCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchH-
Confidence 345678899999999999987632 22234556789999998766 5688888877 47777777776542211
Q ss_pred HHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccCcc
Q 000903 375 REYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKD 444 (1232)
Q Consensus 375 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn~~ 444 (1232)
...+-+|+|.|++.+..-. ... .-++.|+||.|-+.+..
T Consensus 1231 ----------------------------l~~~~~vii~tpe~~d~lq-~iQ--~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1231 ----------------------------LLQKGQVIISTPEQWDLLQ-SIQ--QVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred ----------------------------HhhhcceEEechhHHHHHh-hhh--hcceEeeehhhhhcccC
Confidence 1135679999999875542 222 45789999999987644
No 225
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.94 E-value=0.012 Score=44.96 Aligned_cols=33 Identities=36% Similarity=0.968 Sum_probs=18.6
Q ss_pred CeeecCCCCCccccCcCCCCCCCCCCC-CCCCCccC
Q 000903 62 NLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECV 96 (1232)
Q Consensus 62 ~ll~Cd~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~ 96 (1232)
.|+.|+.|.-..|..|. .+...|.+ +|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 48999999999999999 55566655 79998884
No 226
>PRK04296 thymidine kinase; Provisional
Probab=93.87 E-value=0.16 Score=54.45 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
.++.-+||.|||..++.++..+...+ .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 46788999999999999888776543 36777755
No 227
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.86 E-value=0.27 Score=62.02 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=57.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHH----HHHHHHHhhC---------C------------------
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS----IAFLASLFGE---------R------------------ 332 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqa----ia~l~~l~~~---------~------------------ 332 (1232)
.+++|-|+.-+.-++.......+|+|-+.+|+|||+.- +|+..++... .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 56799999999999999999999999999999999864 4444444310 0
Q ss_pred ---C------CCeEEEeCC--ccHHHHHHHHHHHcCCCcEEEE
Q 000903 333 ---I------SPHLVVAPL--STLRNWEREFATWAPQMNVVMY 364 (1232)
Q Consensus 333 ---~------~p~LIV~P~--sll~qW~~E~~~~~p~~~vv~~ 364 (1232)
. .|.++.+-. +-|.|-.+|+.+..-..+.+++
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVL 142 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVL 142 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEe
Confidence 0 145666663 3478889999886633444443
No 228
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=93.81 E-value=0.13 Score=56.29 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=61.2
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 282 ~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
.+..+||-|.+.+..|+.. ..+.|.++-.-||-|||-..+-+++.++..+..=+-+|||++++.+-..-+..-
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 3567999999999888754 567899999999999999988888888888767788999999998877766543
No 229
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=93.64 E-value=0.062 Score=43.85 Aligned_cols=29 Identities=41% Similarity=0.660 Sum_probs=24.8
Q ss_pred CCcCHHHHHHHHHHHHhhhhhhHHHhhcC
Q 000903 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDD 1110 (1232)
Q Consensus 1082 ~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D 1110 (1232)
..||++||..|+.+|.+||-++|..|-.-
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~ 30 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKR 30 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 36999999999999999999999988653
No 230
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.48 E-value=0.49 Score=59.54 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCC----CCeEEEeCCccH
Q 000903 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTL 345 (1232)
Q Consensus 288 pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~----~p~LIV~P~sll 345 (1232)
+.|..++... ..+.-.+|.-..|+|||.++..++..+..... ..+++++|+.--
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHH
Confidence 7999998655 34677899999999999998888877754321 368999997543
No 231
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.35 E-value=0.78 Score=58.26 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|...+..++ ..||.-.-|+|||..+..|...|...
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4444455544444432 34889999999999999999888653
No 232
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.24 E-value=0.47 Score=55.96 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|.+++..|...+..++ ..++.-+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4556677777777665 47789999999999999999998764
No 233
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.95 E-value=0.53 Score=55.03 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 293 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 293 gv~wL~~~~~~~~--~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
.+.+|......+. +.+|.-+.|+|||..+.+++..+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3444444445554 689999999999999999988876543
No 234
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=92.93 E-value=0.05 Score=61.79 Aligned_cols=25 Identities=44% Similarity=0.789 Sum_probs=22.1
Q ss_pred hHhhhhccCCCcccccccchh-hHHH
Q 000903 131 KQYLVKWKGLSYLHCTWVPEK-EFLK 155 (1232)
Q Consensus 131 ~eYlVKWkg~Sy~h~tW~pe~-~L~~ 155 (1232)
.+|||||+|++.-.|||+|+. .+.|
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee~~~~C 89 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEEHNLDC 89 (270)
T ss_pred ceeeeecCCCCCccccCCchhhcccc
Confidence 489999999999999999998 5555
No 235
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.91 E-value=0.49 Score=57.51 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|......++ ..|+.-+.|+|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444444444443 25899999999999999998887654
No 236
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.83 E-value=0.23 Score=56.13 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=22.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
..+.+|.-+.|+|||..|-++...+...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3457899999999999998887776543
No 237
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=92.64 E-value=0.048 Score=68.16 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=60.9
Q ss_pred cccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCCCcccccccccccccCccCCCCcccccchhhh
Q 000903 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF 129 (1232)
Q Consensus 50 ~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekIL~~R~~p~~~~~~~~~~~~~~~~~ 129 (1232)
+..-|.+|..++.+.+|+.|++.||..|+.|+...++..-|.|..|..
T Consensus 176 ~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~-------------------------------- 223 (696)
T KOG0383|consen 176 PEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKG-------------------------------- 223 (696)
T ss_pred ccccccccccCccccccccchhhhhheeccccccccchhhhhhccccc--------------------------------
Confidence 346688899999999999999999999999988888888888877753
Q ss_pred hhHhhhhccCCCcccccccchhh
Q 000903 130 VKQYLVKWKGLSYLHCTWVPEKE 152 (1232)
Q Consensus 130 ~~eYlVKWkg~Sy~h~tW~pe~~ 152 (1232)
...|+|||+..+|..++|..+..
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~ 246 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDP 246 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCC
Confidence 12799999999999999999874
No 238
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.60 E-value=0.32 Score=58.75 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=31.8
Q ss_pred EcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHH
Q 000903 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRN 347 (1232)
Q Consensus 310 aDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~q 347 (1232)
-+.+|.|||+++.++|.+++..+...+|..|-. +++..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilek 41 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEK 41 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHH
Confidence 357999999999999999999988899998874 55543
No 239
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.44 E-value=1.2 Score=53.19 Aligned_cols=55 Identities=11% Similarity=0.185 Sum_probs=35.5
Q ss_pred ceeEEEEcCcccccCccc---HHHHHHHhccc--ccEEEEecCCCCCCHHHHHHHHhhhc
Q 000903 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLD 482 (1232)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S---~~~~~l~~l~~--~~rllLTGTPlqN~~~EL~~Ll~fL~ 482 (1232)
..++||||++.+.....- .+...+..... ...|.|+||--++.+.+++.-...+.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~ 313 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFS 313 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 468999999998864332 23333333322 35688999987777777776655443
No 240
>PRK06526 transposase; Provisional
Probab=92.37 E-value=0.67 Score=52.16 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHH
Q 000903 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1232)
Q Consensus 292 ~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~ 353 (1232)
.+..|+ ..+.+.+|....|+|||..+.++...+...+. +++++ +...|..++.
T Consensus 90 ~~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~-~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAGH-RVLFA----TAAQWVARLA 142 (254)
T ss_pred hcCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCCC-chhhh----hHHHHHHHHH
Confidence 344666 56788999999999999999998887766543 44442 3345666654
No 241
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.37 E-value=0.36 Score=60.89 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC---CCCeEEEeCCccHH
Q 000903 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLR 346 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~---~~p~LIV~P~sll~ 346 (1232)
..+.|..++.-. ..+.-+||.-..|+|||.++..++..+.... ..++++++|+.--.
T Consensus 153 ~~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA 212 (615)
T PRK10875 153 EVDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAA 212 (615)
T ss_pred CCHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHH
Confidence 458999998654 3466789999999999999888888776532 23688889975443
No 242
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=92.20 E-value=0.14 Score=41.07 Aligned_cols=30 Identities=37% Similarity=0.667 Sum_probs=27.0
Q ss_pred CCcCHHHHHHHHHHHHhhhhhhHHHhhcCc
Q 000903 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1232)
Q Consensus 1082 ~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~ 1111 (1232)
..|+.+||..|+.++.+||.++|..|....
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~ 31 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL 31 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc
Confidence 579999999999999999999999886654
No 243
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.07 E-value=5.5 Score=49.55 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=48.7
Q ss_pred ceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCC-----HHHHHHHHHHHhcC---CCCceEEEeeccccccccccCC-
Q 000903 625 HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG-----GAERQIRIDRFNAK---NSSRFCFLLSTRAGGLGINLAT- 695 (1232)
Q Consensus 625 ~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~-----~~eRq~~i~~Fn~~---~s~~~v~LlsTragg~GINL~~- 695 (1232)
.-|++|...-..|..+..++...|+- .||.|.-+ ..--.++++.|... +.+...|-+--.-.++|||+.+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 35888888888888888888766541 22222111 00024566666422 1132223333444589999985
Q ss_pred -CCEEEEEcCCCC
Q 000903 696 -ADTVIIYDSDWN 707 (1232)
Q Consensus 696 -ad~VIi~D~dWN 707 (1232)
+..||..-.|+-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 788998888874
No 244
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.01 E-value=0.49 Score=46.47 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=31.7
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHH
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW 348 (1232)
+...+|.-.+|+|||..+..++..+.... .+++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC
Confidence 45678999999999999988887765543 356777775544433
No 245
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.95 E-value=1.1 Score=56.16 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
..||.-..|+|||..+..++..|...
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45889999999999999999988753
No 246
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.84 E-value=11 Score=49.58 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
.||.-..|+|||..+..|...|...
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 5899999999999999999988753
No 247
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=91.81 E-value=0.16 Score=40.10 Aligned_cols=29 Identities=45% Similarity=0.759 Sum_probs=26.4
Q ss_pred CcCHHHHHHHHHHHHhhhhhhHHHhhcCc
Q 000903 1083 FWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1232)
Q Consensus 1083 ~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~ 1111 (1232)
.||.+||..|+.++.+||.++|..|....
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~ 29 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL 29 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc
Confidence 49999999999999999999999887664
No 248
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.48 E-value=1.3 Score=49.96 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHh
Q 000903 287 HPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLF 329 (1232)
Q Consensus 287 ~pyQ~~gv~wL~~~~~~~~-~~ILaDemGLGKTiqaia~l~~l~ 329 (1232)
.+.+..+++.+......+. .++|.-+.|+|||..+-.++..+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455667777766655555 477899999999988877666553
No 249
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=90.94 E-value=0.16 Score=51.75 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=26.8
Q ss_pred eeecCCCCCccccCcCCCCCCCC------------------CCCCCCCCccC
Q 000903 63 LMSCDTCTYAYHAKCLVPPLKAP------------------PSGSWRCPECV 96 (1232)
Q Consensus 63 ll~Cd~C~~~~H~~Cl~p~l~~~------------------p~~~W~C~~C~ 96 (1232)
|++|..|.|+||+.+|+|+-... .+.+|.|.+|.
T Consensus 124 LFRC~~C~RawH~~HLP~~~~~~~~~~~~~~~~~~~~R~~EYs~~W~C~dC~ 175 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPSGTTSDDDDDDDTDLRSQRLKEYSIDWQCKDCA 175 (175)
T ss_pred EEecCCccceeehhhCCCCcCCCCCcccccchhHHHHHHHHhCCccccCCCC
Confidence 99999999999999997764221 13479999984
No 250
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.92 E-value=2.5 Score=51.17 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=34.4
Q ss_pred ceeEEEEcCcccccCcccH---HHHHHHh--cccccEEEEecCCCCCCHHHHHHHHhhhcC
Q 000903 428 KWQCMIVDEGHRLKNKDSK---LFSSLKQ--YSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1232)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S~---~~~~l~~--l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p 483 (1232)
.+++||||-+-+....... +...+.. ......|+|++|+-++.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4689999998765443222 2222221 122457889999877777777776665544
No 251
>PRK08181 transposase; Validated
Probab=90.79 E-value=1.7 Score=49.23 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEE
Q 000903 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV 339 (1232)
+..-|..++..+......+.+.+|.-..|+|||..+.++...+...+ ..++.+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~ 140 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFT 140 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-Cceeee
Confidence 45677777654432236788899999999999999999888776653 244444
No 252
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.68 E-value=2.2 Score=53.67 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=26.5
Q ss_pred HHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 294 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 294 v~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
+..|...+..+ ...|+....|+|||..|.+++..+..
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444444443 34589999999999999999888754
No 253
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.51 E-value=1.4 Score=48.36 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=28.5
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHH
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~ 346 (1232)
.+...+|.-+.|+|||..+.++.......+ .+ ++.++.+.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~-~~-~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERG-KS-AIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcC-Cc-EEEEeHHHHH
Confidence 456688999999999999988887765432 23 3344444443
No 254
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.48 E-value=0.42 Score=54.74 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCC---CCeEEEe
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVA 340 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~---~p~LIV~ 340 (1232)
+.+.+|.-+.|+|||..|.++...+...+. ++++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 346889999999999999888877765432 3555444
No 255
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.11 E-value=1.9 Score=55.89 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcCC--Cce-EEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 291 LEGLNFLRFSWSKQ--THV-ILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 291 ~~gv~wL~~~~~~~--~~~-ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
...+..|...+..+ .+. |+.-+.|+|||..+..|+..|...
T Consensus 22 e~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 22 SHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 33444444444433 234 799999999999999999888653
No 256
>CHL00181 cbbX CbbX; Provisional
Probab=90.09 E-value=0.51 Score=54.13 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
+.+.+|.-+.|+|||..|-++...+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3457899999999999998888877654
No 257
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=90.08 E-value=1.2 Score=51.40 Aligned_cols=71 Identities=20% Similarity=0.159 Sum_probs=40.6
Q ss_pred ccccCCCCCCCCCCCc-HHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHH-hhCC-CCCeEEEeCCcc
Q 000903 272 QQYEHSPEFLSGGSLH-PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGER-ISPHLVVAPLST 344 (1232)
Q Consensus 272 ~~~~~~P~~~~~~~L~-pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l-~~~~-~~p~LIV~P~sl 344 (1232)
..+...+.-..|...+ -+|.-++..|.. ..-.=+.|.-.-|+|||+-|+|...+- ...+ ...++|-=|.--
T Consensus 214 ~~l~~~~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vp 287 (436)
T COG1875 214 LLLKHEDQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVP 287 (436)
T ss_pred EecccCchhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcC
Confidence 3334455555554433 388888877621 223336788899999999887654432 2222 234455444433
No 258
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.92 E-value=1.5 Score=55.47 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~--~-~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|-..+..|...+..++ + .|+.-+.|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3444455555555543 2 4889999999999999999888654
No 259
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=89.82 E-value=2 Score=48.71 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 289 YQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 289 yQ~~gv~wL~~~~~~--~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
+|...|+-|...... ..+.++.-..|+|||-++++|...|...
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 788888777655544 4457889999999999999999998764
No 260
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.70 E-value=3.8 Score=47.40 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=21.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
+.+|.-+.|+|||..+-+++..+...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 58999999999999998888877543
No 261
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=89.65 E-value=0.48 Score=59.36 Aligned_cols=167 Identities=16% Similarity=0.219 Sum_probs=97.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHHHHHH-HHHHcCCCcE
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWERE-FATWAPQMNV 361 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~qW~~E-~~~~~p~~~v 361 (1232)
....|||.+-++-|.. ..-..+.+.-..-+|||...+.++.+.....++|+|+|.|. .....|..+ |.-..
T Consensus 15 ~~~~Py~~eimd~~~~--~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi----- 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSD--PSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI----- 87 (557)
T ss_pred CCCChhHHHHHHhcCC--cCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH-----
Confidence 4688999998876622 12456778888899999999999999888888999999996 444566533 33222
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccc-
Q 000903 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL- 440 (1232)
Q Consensus 362 v~~~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrl- 440 (1232)
..+...+..+... . .+..+..+.. +.- ..-.+.++...+ ...|.+...++|++||..+.
T Consensus 88 ---~~sp~l~~~~~~~------~-----~~~~~~t~~~-k~f-~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 ---RASPVLRRKLSPS------K-----SRDSGNTILY-KRF-PGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ---HhCHHHHHHhCch------h-----hcccCCchhh-eec-CCCEEEEEeCCC----CcccccCCcCEEEEechhhcc
Confidence 1111111111100 0 0000000000 000 011133333222 45678888999999999998
Q ss_pred ---cCcccHHHHHH---HhcccccEEEEecCCCCCCHHHHHHH
Q 000903 441 ---KNKDSKLFSSL---KQYSTRHRVLLTGTPLQNNLDELFML 477 (1232)
Q Consensus 441 ---Kn~~S~~~~~l---~~l~~~~rllLTGTPlqN~~~EL~~L 477 (1232)
++..+....+. ..+....++++..||.......+..+
T Consensus 148 ~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 148 DDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred ccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 33344444443 44556788999999976654444433
No 262
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.52 E-value=1.6 Score=50.97 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=35.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
.++|+|.....-+...-.-...-++..+.|+|||..|..++..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 36788888876665542222335689999999999999999998764
No 263
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.46 E-value=1.7 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
..|+....|+|||..|.+++..+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46789999999999999999887654
No 264
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=89.44 E-value=0.17 Score=51.63 Aligned_cols=47 Identities=28% Similarity=0.758 Sum_probs=33.6
Q ss_pred ccccccC------CCCeeecCCCCCccccCcCCCCCCC------CCCCC--CCCCccCCCC
Q 000903 53 SCQACGE------SENLMSCDTCTYAYHAKCLVPPLKA------PPSGS--WRCPECVSPL 99 (1232)
Q Consensus 53 ~C~~C~~------~~~ll~Cd~C~~~~H~~Cl~p~l~~------~p~~~--W~C~~C~~~~ 99 (1232)
.|.+|+. .|.|+.|.+|..+||..||.|.... +..++ -.|..|....
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 4778853 2459999999999999999876322 22333 4788888644
No 265
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=89.39 E-value=4.2 Score=49.09 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=91.7
Q ss_pred HHHHH-HHHHHHHH--HcCceEEEEecchhHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 609 KLQLL-DKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 609 Kl~~L-~klL~~l~--~~g~KvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
++... .++|+.+. ....++|||...---.=.|..+|...+++|+.++--++..+-..+-..|..+... ++|.|-|
T Consensus 282 Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TER 359 (442)
T PF06862_consen 282 RFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTER 359 (442)
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEhH
Confidence 44443 34777776 3457899998766555668999999999999999999999999999999876543 4566666
Q ss_pred cc-ccccccCCCCEEEEEcCCCChhhHHHHHHhhhhcCC----CCceEEEEEeeC
Q 000903 686 AG-GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ----TNKVMIFRLITR 735 (1232)
Q Consensus 686 ag-g~GINL~~ad~VIi~D~dWNp~~~~Qa~gR~hRiGQ----~k~V~Vyrlvt~ 735 (1232)
+- =.=..+..+.+||+|.+|-+|+-+...+.-...-.+ ...+.|.-|.++
T Consensus 360 ~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 360 FHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 53 345567789999999999999999988865544333 234555555554
No 266
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.27 E-value=2.3 Score=50.58 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~--~-~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
|...+..|...+..++ + .++.-+.|+|||..|-+++..+..
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4555555655555442 3 489999999999999999888763
No 267
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=88.97 E-value=0.27 Score=57.28 Aligned_cols=31 Identities=35% Similarity=0.724 Sum_probs=28.5
Q ss_pred CCCcCHHHHHHHHHHHHhhhhhhHHHhhcCc
Q 000903 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1232)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~ 1111 (1232)
...||.+|+..||-++..||||||+.|-.-.
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hI 102 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHI 102 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4689999999999999999999999987765
No 268
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.97 E-value=2 Score=53.14 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|...+..++ ..||.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4455555555445543 67899999999999999999888653
No 269
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.86 E-value=3.6 Score=51.07 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|......+ ...|+.-..|+|||..|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444444332 234899999999999999999888653
No 270
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.62 E-value=3.1 Score=46.28 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=22.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
....+|.-+.|+|||..+.++...+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4567899999999998887777766543
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.58 E-value=3.3 Score=48.01 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=25.0
Q ss_pred eeEEEEcCcccccCcc--cHHHHHHHhcccccEEEEecCCC
Q 000903 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPL 467 (1232)
Q Consensus 429 w~~vIvDEaHrlKn~~--S~~~~~l~~l~~~~rllLTGTPl 467 (1232)
.++|||||+|++.... ..+...+.......++++|++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4689999999983322 23333344455667888887654
No 272
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.41 E-value=5 Score=50.99 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 291 LEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 291 ~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
...+..|...+..+ ...||.-..|+|||..+..++..|...
T Consensus 22 e~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 22 EHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 33444444433443 346899999999999999988887643
No 273
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=88.24 E-value=0.99 Score=36.77 Aligned_cols=42 Identities=12% Similarity=0.416 Sum_probs=35.0
Q ss_pred CChhHHHHHHHHHHhcCCCCcchhhhchhhc-CCCHHHHHHHHHH
Q 000903 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLK-QKSYEEIREYGIL 1012 (1232)
Q Consensus 969 F~~~~rr~F~~a~~kyG~~~~~~~~i~~el~-~Ks~~Evk~Y~~~ 1012 (1232)
||..+-..|++++.+||.+ +|..|+..+. ++|..+++.+...
T Consensus 4 Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 4 WTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp S-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHh
Confidence 6667778999999999976 4789999999 9999999877543
No 274
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.18 E-value=0.31 Score=59.32 Aligned_cols=47 Identities=32% Similarity=0.809 Sum_probs=39.0
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCC-CCCCCCCCCccCC
Q 000903 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 97 (1232)
Q Consensus 51 ~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~-~p~~~W~C~~C~~ 97 (1232)
-..|.+|..+|++++|+.|+.+||..|-.+++.. .+...|.|..|..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 5789999999999999999999999999998862 2345677777753
No 275
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=88.01 E-value=1.8 Score=44.12 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=34.9
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccc--cccccccCC--CCEEEEEcCCC
Q 000903 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA--GGLGINLAT--ADTVIIYDSDW 706 (1232)
Q Consensus 652 ~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTra--gg~GINL~~--ad~VIi~D~dW 706 (1232)
..+.+... .+...+++.|.......-.+|+++.. .++|||++. +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444432 34578899998643310125555555 899999985 78899987775
No 276
>PRK08116 hypothetical protein; Validated
Probab=87.95 E-value=3.6 Score=46.68 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHH
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW 348 (1232)
+.+.+|.-++|+|||..+.+++..+...+ .+++++.-..++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHHH
Confidence 44688999999999999999999988763 366655433444333
No 277
>PHA02533 17 large terminase protein; Provisional
Probab=87.89 E-value=2.8 Score=52.25 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhh-CCCCCeEEEeCC
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPL 342 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~-~~~~p~LIV~P~ 342 (1232)
..|.|+|..-+..|. .++-.++.-.=..|||..+.+++.++.- .....+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 569999999887662 2344567777889999988765544332 333377788884
No 278
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.75 E-value=3.2 Score=51.73 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=27.7
Q ss_pred HHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 292 EGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 292 ~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
..++.|...+..++ ..|+.-+.|+|||..|..++..+..
T Consensus 23 ~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 23 HALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444444444433 3578999999999999999988864
No 279
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.55 E-value=3.1 Score=51.11 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 307 VILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
.|+..+.|+|||..|-+++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 589999999999999988887754
No 280
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=87.49 E-value=4.7 Score=46.92 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=39.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
.++|+|......|...+..++ ..++....|+||+..|.+|+..++...
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 588999999888877766544 467899999999999999999987654
No 281
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=87.39 E-value=4.1 Score=42.54 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhCCC
Q 000903 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGERI 333 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~~~ 333 (1232)
|.+.+..|...+.+++ ..|+..+.|.||+..|..++..++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 5556666666665542 3588999999999999999999987643
No 282
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.27 E-value=4.5 Score=50.23 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHHHhhcCCCc---eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 292 EGLNFLRFSWSKQTH---VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 292 ~gv~wL~~~~~~~~~---~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
..+..|......+.- .|+..+.|+|||..+.+++..+...
T Consensus 21 ~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 21 SVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred HHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 334444444444432 3789999999999999999888653
No 283
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=87.12 E-value=1.3 Score=34.67 Aligned_cols=42 Identities=12% Similarity=0.388 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHH
Q 000903 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGIL 1012 (1232)
Q Consensus 969 F~~~~rr~F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~~ 1012 (1232)
||..+...|++++.+||.. +|..|+..+.++|..+|+.|...
T Consensus 2 Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCHHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHH
Confidence 6677788999999999963 47899999999999999988654
No 284
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.85 E-value=5.3 Score=47.47 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=25.7
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
....|.-..|.|||.++..++..+...+ ..+++|.-
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~G-kkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEEec
Confidence 3456888999999999888887776544 25555544
No 285
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=86.82 E-value=0.21 Score=60.74 Aligned_cols=58 Identities=36% Similarity=0.815 Sum_probs=41.3
Q ss_pred ccccccccCCCC-----eeecCCCCCccccCcCCCCCCCC-CCCCCCCCccCC-----CCccccccccc
Q 000903 51 DDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVS-----PLNDIDKILDC 108 (1232)
Q Consensus 51 ~~~C~~C~~~~~-----ll~Cd~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~-----~~~~iekIL~~ 108 (1232)
..+|.+|+..|. |+.|..|...||.+|+.-.+... -.+.|.||.|.- ..+++.+.+.|
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~C 86 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLC 86 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCccccccc
Confidence 567888886553 99999999999999996544332 244599999973 23445555555
No 286
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.78 E-value=6.2 Score=47.56 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|...+.++ ...|+..+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444455555555554 236789999999999999999888653
No 287
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=86.76 E-value=2.4 Score=54.34 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=88.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC-CccHHHHHHHHHHHcCCCcEEE
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVVM 363 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P-~sll~qW~~E~~~~~p~~~vv~ 363 (1232)
.|-.-|++|+-.. .....-.++---.|+|||.+..+++..|...+. .+|+.+= .+.+.|-.--+..+. +. ++
T Consensus 669 ~LN~dQr~A~~k~---L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk-kVLLtsyThsAVDNILiKL~~~~--i~-~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKA---LAAEDYALILGMPGTGKTTTISLLIKILVALGK-KVLLTSYTHSAVDNILIKLKGFG--IY-IL 741 (1100)
T ss_pred hcCHHHHHHHHHH---HhccchheeecCCCCCchhhHHHHHHHHHHcCC-eEEEEehhhHHHHHHHHHHhccC--cc-ee
Confidence 5888999997433 233344455556899999988888887776653 5666655 577778766666543 11 23
Q ss_pred EEcChhH-HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccC
Q 000903 364 YVGTSQA-RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1232)
Q Consensus 364 ~~g~~~~-r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn 442 (1232)
--|.... -..++++-. ......+ ....-........||.+|---+. ...|..-.||++|||||-.+.-
T Consensus 742 RLG~~~kih~~v~e~~~-~~~~s~k--------s~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTL-TNETSEK--------SYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ecCCccccchHHHHHhc-ccccchh--------hHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc
Confidence 3344332 122333221 0000000 00000001123346666543332 3344556799999999976543
Q ss_pred cccHHHHHHHhcccccEEEEecCCCC
Q 000903 443 KDSKLFSSLKQYSTRHRVLLTGTPLQ 468 (1232)
Q Consensus 443 ~~S~~~~~l~~l~~~~rllLTGTPlq 468 (1232)
+ -.|.-+....+..|-|-+.|
T Consensus 811 P-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 811 P-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred c-----hhhhhhhhcceEEEeccccc
Confidence 2 33445566778888887654
No 288
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=86.61 E-value=4.8 Score=50.86 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|-..++.|...+..++ ..||.-..|+|||..|..++..|...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4444455555454443 57889999999999999999988754
No 289
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.53 E-value=5 Score=50.51 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~--~-~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|...+..++ + .|+.-..|+|||..|..++..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4455555555545432 3 4789999999999999999888753
No 290
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.29 E-value=4.5 Score=48.03 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 289 yQ~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
-|-.++..|...+..++ .-++.-..|+|||..|.+|+..++...
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 35566666666666643 467899999999999999999998643
No 291
>PF13173 AAA_14: AAA domain
Probab=86.28 E-value=4.9 Score=39.96 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHh
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLF 329 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~ 329 (1232)
+.-.+|.-..|.|||..+..++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45578899999999998888887765
No 292
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=86.15 E-value=10 Score=47.62 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecch----hHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQ----HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~----~~ldiL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~L 681 (1232)
.|||..+..--+-...+.|..+.+-...- ...+-+.++|...|+.+..++|++.+..|.+++.+.-++..+ ++
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---iv 369 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IV 369 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EE
Confidence 47776554333334456788888887753 356778888888899999999999999999999999776555 88
Q ss_pred eecccc-ccccccCCCCEEEEEcC
Q 000903 682 LSTRAG-GLGINLATADTVIIYDS 704 (1232)
Q Consensus 682 lsTrag-g~GINL~~ad~VIi~D~ 704 (1232)
+.|.|. -..+++...-.||+=+.
T Consensus 370 VGTHALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred EEcchhhhcceeecceeEEEEecc
Confidence 999995 77889988888887554
No 293
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.14 E-value=4.6 Score=50.21 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=72.7
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhh-CCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000903 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1232)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~Lls 683 (1232)
..|||..+...++......|.++||.+.......-+.+.|.. -|..+..++|.++..+|..+..+...+... |++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 469999998888888888899999999998877766666654 367899999999999998887766544333 6788
Q ss_pred ccccccccccCCCCEEEEEc
Q 000903 684 TRAGGLGINLATADTVIIYD 703 (1232)
Q Consensus 684 Tragg~GINL~~ad~VIi~D 703 (1232)
|++.- =+-+...+.||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 87642 23456677787765
No 294
>PRK08727 hypothetical protein; Validated
Probab=85.66 E-value=3.6 Score=45.72 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=22.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
..+|....|+|||..+.++...+...+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999988888877766553
No 295
>PRK14974 cell division protein FtsY; Provisional
Probab=85.50 E-value=4.8 Score=47.14 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=25.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
-.++.-..|.|||.++..++..+...+. +++++..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~ 176 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAG 176 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecC
Confidence 3567889999999988877777765443 5555543
No 296
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.49 E-value=7 Score=48.10 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 292 ~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
..+..|...+..+ ...|+.-..|+|||..|..++..+...
T Consensus 20 ~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 20 VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3444444444443 457899999999999998888777543
No 297
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.09 E-value=22 Score=44.98 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 294 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 294 v~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
+..|...+.++ ...|+.-+.|+|||..|..++..+..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 34444444443 34568999999999999999988864
No 298
>PF13245 AAA_19: Part of AAA domain
Probab=84.86 E-value=2.4 Score=38.28 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhC---CCCCeEEEeCCccHHH
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRN 347 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~---~~~p~LIV~P~sll~q 347 (1232)
+.-.++--..|+|||.+++..+.++... ...++||++|....-+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 3445669999999999998888888742 2348999999755433
No 299
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.83 E-value=3.8 Score=48.51 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHh-hc--CCCceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 286 LHPYQLEGLNFLRFS-WS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~-~~--~~~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
=|..|++.+.-.+.. .. ...+.+|.-+.|+|||..+-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 377888877443332 22 2356889999999999999888887754
No 300
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=84.81 E-value=1.7 Score=34.62 Aligned_cols=45 Identities=16% Similarity=0.458 Sum_probs=37.6
Q ss_pred CCChhHHHHHHHHHHhcCCCCcchhhhchhhcCCCHHHHHHHHHHHH
Q 000903 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFL 1014 (1232)
Q Consensus 968 GF~~~~rr~F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~~F~ 1014 (1232)
.|+..+...|++++.+||..+ |..|+..+.++|..+++.+...++
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~~~--w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 3 EWTEEEDELLIELVKKYGKNN--WEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCHHHHHHHHHHHHHHCcCC--HHHHHHHcCCCCHHHHHHHHHHHc
Confidence 477778889999999999644 688999999999999998866543
No 301
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=84.75 E-value=6 Score=46.17 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
++|+|...-.-|...+..++ .-++.-+.|+||+..|.+|+..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888877777777766643 345789999999999999999987643
No 302
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=84.72 E-value=0.85 Score=38.96 Aligned_cols=41 Identities=29% Similarity=0.524 Sum_probs=28.7
Q ss_pred cCHHHHHHHHHHHHhhhhhhHHHhhcCccCCchHHhhHhhCCCCCc
Q 000903 1084 WKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFIN 1129 (1232)
Q Consensus 1084 w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l~l~~~i~~e~~~~~~~ 1129 (1232)
||.+||..|+.++.+||. +|..|-.- |..|....+..++..
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEH----LGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHH----STTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHH----HCcCCHHHHHHHHHH
Confidence 999999999999999995 79998544 224555555555555
No 303
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.69 E-value=5.8 Score=49.23 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~--~~-ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|......+. +. ++.-+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4444555544444443 23 899999999999999999888653
No 304
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=84.55 E-value=6.3 Score=51.36 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=43.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll 345 (1232)
+..|.+-|.+++..+. ..+.-++|....|+|||...-+++..+...+ .++++++|....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~g-~~V~~~ApTg~A 408 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAAG-YRVIGAALSGKA 408 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhCC-CeEEEEeCcHHH
Confidence 4578999999998763 2245678999999999988766655544432 478888997654
No 305
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=84.12 E-value=5.4 Score=46.74 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHHcCCCcEEEEE
Q 000903 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (1232)
Q Consensus 289 yQ~~gv~wL~~~~~~~~--~-~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~~p~~~vv~~~ 365 (1232)
.|...+..|...+..++ + .++..+.|.|||..|..++..+........ .|-........-.....|+++.+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~---~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV---EPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 35555556655555442 3 489999999999999999998875431110 02222333333333445676666554
Q ss_pred cChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccCc-c
Q 000903 366 GTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNK-D 444 (1232)
Q Consensus 366 g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn~-~ 444 (1232)
|..-....+++.- +.+. ..... -.+.++||||||++... .
T Consensus 87 ~~~i~id~ir~l~------------------------------------~~~~-~~~~~--~~~kvviI~~a~~~~~~a~ 127 (329)
T PRK08058 87 GQSIKKDQIRYLK------------------------------------EEFS-KSGVE--SNKKVYIIEHADKMTASAA 127 (329)
T ss_pred cccCCHHHHHHHH------------------------------------HHHh-hCCcc--cCceEEEeehHhhhCHHHH
Confidence 4322222222210 0000 00011 14689999999998542 2
Q ss_pred cHHHHHHHhcccccEEEEecC
Q 000903 445 SKLFSSLKQYSTRHRVLLTGT 465 (1232)
Q Consensus 445 S~~~~~l~~l~~~~rllLTGT 465 (1232)
..+.+.+........++|+.+
T Consensus 128 NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 128 NSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred HHHHHHhcCCCCCceEEEEeC
Confidence 344455555455566666655
No 306
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.06 E-value=6.2 Score=49.96 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~--~-~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|...+..++ + .|+.-..|+|||..+..++..|...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4445555555544443 2 4889999999999999999888753
No 307
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.95 E-value=6.8 Score=48.06 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.5
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhCCCC-CeEEEeCCccH
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTL 345 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~~~~-p~LIV~P~sll 345 (1232)
...+|....|+|||..+-++...+.....+ .++.|.....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 347899999999999998888887765433 34444333333
No 308
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.86 E-value=16 Score=45.72 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
|...+..|......+ ...|+.-+.|+|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444444333332 23489999999999999999888764
No 309
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.64 E-value=7.3 Score=50.28 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhh-CCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeec
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsT 684 (1232)
.|||......++......|.++||.+.......-+.+.|.. -|..+..++|.++..+|.+...+...+... ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 58899888777877777899999999998877766666654 478899999999999998887777654433 67888
Q ss_pred cccccccccCCCCEEEEEcC
Q 000903 685 RAGGLGINLATADTVIIYDS 704 (1232)
Q Consensus 685 ragg~GINL~~ad~VIi~D~ 704 (1232)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 7543 255667778877663
No 310
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.54 E-value=7.9 Score=49.11 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~--~-~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
|...+..|...+..+. + .|+.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555566655555543 2 389999999999999999988753
No 311
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.46 E-value=7.2 Score=47.11 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhCCCC-CeEEEe
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVA 340 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~~~~-p~LIV~ 340 (1232)
..+|.-..|+|||..+.++...+.....+ .++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46799999999999998888887765433 455553
No 312
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=83.21 E-value=8.8 Score=48.43 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC-ccHHH
Q 000903 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRN 347 (1232)
Q Consensus 288 pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~-sll~q 347 (1232)
|+=+.-++-+...+.+.-.++++ +=|-|||..+..++..+.......++|.+|. ++...
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~e 231 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLT 231 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHH
Confidence 34445555566666666666665 6899999887766666554222478999994 44433
No 313
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.04 E-value=7.2 Score=49.64 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|...+..+ ...|+..+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 445555555554544 345899999999999999999988653
No 314
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.68 E-value=6.6 Score=48.07 Aligned_cols=47 Identities=15% Similarity=-0.030 Sum_probs=30.8
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhCCCC-CeEEEeCCccHHHHHHH
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNWERE 351 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~~~~-p~LIV~P~sll~qW~~E 351 (1232)
...+|.-+.|+|||..+-++..++.....+ .++.|.+...+......
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 457799999999998888887777654333 55555554444333333
No 315
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=82.64 E-value=8.7 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
.|+.-+.|+|||..|-.++..+...
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5679999999999999888877543
No 316
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.60 E-value=7.6 Score=47.96 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~--~-~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
|...+..|.....++. + .++.-+.|+|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455555555555433 3 368999999999999888887754
No 317
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=82.57 E-value=4.1 Score=43.99 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
.+|.-.+|.|||.++.=+++++... ..++.+|+-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~ 37 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISA 37 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecC
Confidence 4678899999999998888888767 345555554
No 318
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=82.44 E-value=6.5 Score=46.83 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=36.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHH
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~ 354 (1232)
..+.-.+|.-++|.|||..++.++..+...+ +++|+|.-.....|......+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~EEs~~qi~~Ra~r 131 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSGEESPEQIKLRADR 131 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCcCHHHHHHHHHH
Confidence 4455578999999999999988887765543 478888776555555444333
No 319
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=81.56 E-value=8.8 Score=51.13 Aligned_cols=59 Identities=14% Similarity=-0.009 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll 345 (1232)
|..|.+-|.+++..+. ..+.-++|.--.|+|||.+.-+ +..++......++.++|....
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~-~~~~~e~~G~~V~~~ApTGkA 402 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGV-AREAWEAAGYEVRGAALSGIA 402 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEecCcHHH
Confidence 4579999999998763 2234578999999999987444 443333332468888887644
No 320
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=81.47 E-value=3.4 Score=51.01 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=72.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCC-CeEEEeCC-ccH----HHHHHHHHHHcCCCcEEEEEcChhHHHHHH
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STL----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~-p~LIV~P~-sll----~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~ 375 (1232)
.+.-.+.|. +=-=|||...+.+|..++..-.+ .+..|+-. ++. ..-...+.+|+|.-+++.-.|..-
T Consensus 201 KQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI------ 273 (668)
T PHA03372 201 KQKATVFLV-PRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVI------ 273 (668)
T ss_pred hccceEEEe-cccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEE------
Confidence 344444443 55678999999998888875545 78888884 333 334455678998776643322110
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccCcccHHHHHHHhcc
Q 000903 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS 455 (1232)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~ 455 (1232)
-+..+ ..+.-++..| ......++.-.|++++|||||-++...=...--+...+
T Consensus 274 --~~s~p---------------------g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~ 326 (668)
T PHA03372 274 --SIDHR---------------------GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQN 326 (668)
T ss_pred --EEecC---------------------CCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhccc
Confidence 00011 0111122222 12234667778999999999998754322222222223
Q ss_pred cccEEEEecC
Q 000903 456 TRHRVLLTGT 465 (1232)
Q Consensus 456 ~~~rllLTGT 465 (1232)
....+.+|.|
T Consensus 327 ~~KiIfISS~ 336 (668)
T PHA03372 327 TTKIIFISST 336 (668)
T ss_pred CceEEEEeCC
Confidence 4455666654
No 321
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=80.82 E-value=1.7 Score=36.99 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=25.8
Q ss_pred CCCCcCHHHHHHHHHHHHhhhhhhH---HHhh
Q 000903 1080 GGKFWKEEHDSLLLRAVLKHGYGRW---QAIV 1108 (1232)
Q Consensus 1080 ~~~~w~~eeD~~LL~~i~~~Gyg~w---e~Ik 1108 (1232)
....||+|+-...|.+|..+|.|.| ..|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~ 33 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRIL 33 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 3468999999999999999999999 7774
No 322
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=80.75 E-value=14 Score=47.48 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHH----HHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ld----iL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~L 681 (1232)
.|||..+..-.+-.....|.+++|.+....... .+..++...|+++..++|+++..+|..+++...++..+ ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 578876544333333456889999999876544 44555555689999999999999999999888765444 66
Q ss_pred eecccc-ccccccCCCCEEEEEcCC
Q 000903 682 LSTRAG-GLGINLATADTVIIYDSD 705 (1232)
Q Consensus 682 lsTrag-g~GINL~~ad~VIi~D~d 705 (1232)
++|.+. -..+.+.....||+=+-+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 777663 446777788888776654
No 323
>PRK05642 DNA replication initiation factor; Validated
Probab=80.73 E-value=14 Score=40.99 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=24.8
Q ss_pred eEEEEcCcccccCcc---cHHHHHHHhcc-cccEEEEecC
Q 000903 430 QCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTGT 465 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~---S~~~~~l~~l~-~~~rllLTGT 465 (1232)
++||||+.|.+.+.. ..++..+..+. ...++++|+|
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 579999999886543 33555555544 3567888887
No 324
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=80.56 E-value=7.6 Score=48.83 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
.|+.-+.|+|||..|.+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 5899999999999999999888643
No 325
>PRK06893 DNA replication initiation factor; Validated
Probab=80.39 E-value=10 Score=41.90 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
..+|.-..|+|||..+.++...+...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 358999999999998888887766553
No 326
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=80.21 E-value=7.7 Score=49.79 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=87.4
Q ss_pred EeccCCHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHH
Q 000903 536 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 615 (1232)
Q Consensus 536 v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~il~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~k 615 (1232)
....+++.|...+..|.... -+.+++|+.++ ..|||.++...
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~Gv---------------TGSGKTEvYl~ 236 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGV---------------TGSGKTEVYLE 236 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCC---------------CCCcHHHHHHH
Confidence 45678889988888775431 23567787764 47999999999
Q ss_pred HHHHHHHcCceEEEEecchhHHHHHHHHHhhC-CCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecccc
Q 000903 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1232)
Q Consensus 616 lL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTrag 687 (1232)
++....++|+.+||...-+....-+.+.+..+ |.++..+++..+..+|.....+...+.. .+++.||++
T Consensus 237 ~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~---~vVIGtRSA 306 (730)
T COG1198 237 AIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA---RVVIGTRSA 306 (730)
T ss_pred HHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc---eEEEEechh
Confidence 99999999999999999888776666666543 7899999999999999999888865443 477888774
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.21 E-value=19 Score=42.92 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.7
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhC-CCCCeEEEeC
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~-~~~p~LIV~P 341 (1232)
..+...+|.-.+|.|||.++..++..+... +..++.+|+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 446667899999999999998888776433 3335655554
No 328
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=80.18 E-value=12 Score=43.49 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
.++|+|...-..|...+..++ .-++....|+||+..|..|+..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 477888888877777665544 467899999999999999999987654
No 329
>PRK04132 replication factor C small subunit; Provisional
Probab=80.05 E-value=7.1 Score=51.05 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=31.5
Q ss_pred ceeEEEEcCcccccCc-ccHHHHHHHhcccccEEEEecCCCCCCHHHHHH
Q 000903 428 KWQCMIVDEGHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM 476 (1232)
Q Consensus 428 ~w~~vIvDEaHrlKn~-~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~ 476 (1232)
++.+|||||||++-.. ...+.+.+.......+++|+.++...-+.-|.+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 4679999999999532 233444445555677888888775544444443
No 330
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=80.03 E-value=8.7 Score=49.31 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCC--Cc-eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 291 LEGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 291 ~~gv~wL~~~~~~~--~~-~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
-..+.-|......+ .+ .|+.-+.|.|||..|-.++..+...
T Consensus 24 e~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 24 DHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 33444444444443 23 4789999999999999998887653
No 331
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=79.75 E-value=8.1 Score=45.37 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=38.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~---~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
.++|+|...-..|...+..++ .-+++-+.|+||+..|.+|+.++.-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 467888888877877766544 35689999999999999999999764
No 332
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=79.74 E-value=2.9 Score=47.95 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC-C--CCeEEEeCCccH
Q 000903 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I--SPHLVVAPLSTL 345 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~-~--~p~LIV~P~sll 345 (1232)
|.+-|...|++ ..+..++-...|+|||.+.+.-+.++.... . ..+|+|+++...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45778888764 356666667799999999998888887654 2 479999997554
No 333
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=79.68 E-value=15 Score=46.15 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 292 ~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
..+..|...+..+ ...|+.-+.|+|||..|..++..+...
T Consensus 23 ~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 23 LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3344444444443 335789999999999999999988654
No 334
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=79.60 E-value=1.3 Score=46.74 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=26.1
Q ss_pred ccccEEEecHHHHhhccc--ccC--CCceeEEEEcCcccccC
Q 000903 405 IKFDVLLTSYEMINLDSA--SLK--PIKWQCMIVDEGHRLKN 442 (1232)
Q Consensus 405 ~~~~VlItsye~l~~d~~--~l~--~i~w~~vIvDEaHrlKn 442 (1232)
...||||++|..+..... .+. ..+-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 467899999999876422 121 23446899999999854
No 335
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=79.34 E-value=12 Score=43.88 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHHhhcCCC-ceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 286 LHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~-~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
++|+|...-+-|.....+-. ..++....|+|||..|..|+..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 46777777666655422322 345789999999999999999987654
No 336
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=79.32 E-value=10 Score=49.06 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHH----HHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHML----DLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~l----diL~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~L 681 (1232)
.|||..+..-.+-.....|.+++|.+.....+ +.+..++...|+++..++|+++..+|..++.....+... ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 58887765444434445788999999986644 455666666789999999999999999999988765444 67
Q ss_pred eeccc-cccccccCCCCEEEEEcCC
Q 000903 682 LSTRA-GGLGINLATADTVIIYDSD 705 (1232)
Q Consensus 682 lsTra-gg~GINL~~ad~VIi~D~d 705 (1232)
++|.+ ....+.+.....||+=+-+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 77765 4556778888888876554
No 337
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=79.21 E-value=1.1 Score=37.40 Aligned_cols=30 Identities=27% Similarity=0.862 Sum_probs=25.8
Q ss_pred ccccccccC----CCCeeecCCCCCccccCcCCC
Q 000903 51 DDSCQACGE----SENLMSCDTCTYAYHAKCLVP 80 (1232)
Q Consensus 51 ~~~C~~C~~----~~~ll~Cd~C~~~~H~~Cl~p 80 (1232)
...|.+|+. +++++.|..|...||..|+..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 357999986 567999999999999999854
No 338
>PRK09183 transposase/IS protein; Provisional
Probab=79.04 E-value=11 Score=42.73 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEe
Q 000903 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~ 340 (1232)
++.++.|+ ..+.+.+|.-+.|+|||..+.++...+...+ ..++.+.
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~~ 137 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFTT 137 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEe
Confidence 34444554 6788899999999999999888866554433 2455443
No 339
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=78.68 E-value=9 Score=48.14 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCCC-CeEEEeCC-ccHHHHHHH----HHHHcCCCcEEEEEcChhHHHHHHHh
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWERE----FATWAPQMNVVMYVGTSQARNIIREY 377 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~~-p~LIV~P~-sll~qW~~E----~~~~~p~~~vv~~~g~~~~r~~i~~~ 377 (1232)
.+-.+..-.==-|||..+.+.+..+.....+ .+++++|. ++...--.| +++|+|...+....|. .| .+
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~i 327 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-SF 327 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-EE
Confidence 3444555566789999877777766644333 88999994 444444444 4567765444333331 11 11
Q ss_pred hhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccCcccHHHHHHHhc--c
Q 000903 378 EFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY--S 455 (1232)
Q Consensus 378 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l--~ 455 (1232)
.++.+ .+-.+...|- .....++...++++||||||-++... +...+-.+ .
T Consensus 328 --~f~nG--------------------~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~a--l~~ilp~l~~~ 379 (738)
T PHA03368 328 --SFPDG--------------------SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPDA--VQTIMGFLNQT 379 (738)
T ss_pred --EecCC--------------------CccEEEEEec----cCCCCccCCcccEEEEechhhCCHHH--HHHHHHHHhcc
Confidence 11111 0112333211 22345667789999999999997632 22222111 2
Q ss_pred cccEEEEecC
Q 000903 456 TRHRVLLTGT 465 (1232)
Q Consensus 456 ~~~rllLTGT 465 (1232)
....|.+|.|
T Consensus 380 n~k~I~ISS~ 389 (738)
T PHA03368 380 NCKIIFVSST 389 (738)
T ss_pred CccEEEEecC
Confidence 3455666655
No 340
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=78.65 E-value=15 Score=42.19 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=28.2
Q ss_pred cccCCCceeEEEEcCcccc-cCcccH---HHHHHHhccccc--EEEEecCC
Q 000903 422 ASLKPIKWQCMIVDEGHRL-KNKDSK---LFSSLKQYSTRH--RVLLTGTP 466 (1232)
Q Consensus 422 ~~l~~i~w~~vIvDEaHrl-Kn~~S~---~~~~l~~l~~~~--rllLTGTP 466 (1232)
..|+.+.-.+|||||.|++ .+...+ ...+|+.+.... -+.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4556677889999999996 444333 334444444333 35677876
No 341
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.38 E-value=11 Score=47.82 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|...+..|...+.++ ...|+....|+|||..|..++..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 555666666655553 236789999999999999999888653
No 342
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=78.37 E-value=9.2 Score=50.62 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 290 QLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 290 Q~~gv~wL~~~~--~~~~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
|-+-+..++..+ ....+.||.-+.|.|||..+=+++..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 334466665533 34568999999999999998777776644
No 343
>PRK11054 helD DNA helicase IV; Provisional
Probab=78.17 E-value=9.9 Score=48.98 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=57.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC---CCCeEEEeCCccHHHHHHH-HHHHcC--
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWERE-FATWAP-- 357 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~---~~p~LIV~P~sll~qW~~E-~~~~~p-- 357 (1232)
..|.+-|.++|.. ..++.++....|+|||.+.++-+.+|.... +..+|+++......+..++ +....+
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4588999999852 234556666799999999999999988653 2379999998777766555 655554
Q ss_pred CCcEEEEEcChhHHHHHHHh
Q 000903 358 QMNVVMYVGTSQARNIIREY 377 (1232)
Q Consensus 358 ~~~vv~~~g~~~~r~~i~~~ 377 (1232)
.+.+-++|+ -...+++++
T Consensus 269 ~v~v~TFHS--lal~Il~~~ 286 (684)
T PRK11054 269 DITARTFHA--LALHIIQQG 286 (684)
T ss_pred CcEEEeHHH--HHHHHHHHh
Confidence 233333433 233455543
No 344
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=78.10 E-value=11 Score=45.97 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=27.5
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhCCCC-CeEEEeC
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP 341 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~~~~-p~LIV~P 341 (1232)
...+|.-+.|+|||..+-++...+.....+ .++.|..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 357899999999999988888887765443 4555543
No 345
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.05 E-value=23 Score=44.79 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
.|+.-+-|+|||..+..++..+...
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4789999999999999999888653
No 346
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=77.49 E-value=15 Score=46.20 Aligned_cols=43 Identities=19% Similarity=0.010 Sum_probs=28.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhCCCC-CeEEEeCCccHHHH
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNW 348 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~~~~-p~LIV~P~sll~qW 348 (1232)
..+|.-..|+|||..+.++..++.....+ .++.+....++..+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 37889999999999888888877654333 45554443333333
No 347
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=77.46 E-value=7.2 Score=43.93 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHH
Q 000903 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1232)
Q Consensus 288 pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~ 353 (1232)
-.++..+.-+...+..+.+.+|.-.+|+|||..++|+...+... ..+++++.-..++.+++..+.
T Consensus 89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHHHHHHh
Confidence 34555554444444688899999999999999999999999833 337777766666666665553
No 348
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=77.16 E-value=1.7 Score=57.96 Aligned_cols=49 Identities=41% Similarity=1.155 Sum_probs=42.9
Q ss_pred cccccccccCCCC--eeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCC
Q 000903 50 KDDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1232)
Q Consensus 50 ~~~~C~~C~~~~~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1232)
....|..|..+.. ++.|+.|...+|..|+.|++..++.++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3467999988764 349999999999999999999999999999999865
No 349
>PRK04195 replication factor C large subunit; Provisional
Probab=76.59 E-value=20 Score=44.35 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=28.9
Q ss_pred CcHHHHHHH-HHHHHhhcC---CCceEEEcCCCCcHHHHHHHHHHHH
Q 000903 286 LHPYQLEGL-NFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASL 328 (1232)
Q Consensus 286 L~pyQ~~gv-~wL~~~~~~---~~~~ILaDemGLGKTiqaia~l~~l 328 (1232)
.++.++.-+ .|+ ..|.+ ...++|.-+.|+|||..+-+++..+
T Consensus 18 g~~~~~~~l~~~l-~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWI-ESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHH-HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 445555555 444 33444 4568999999999999888777765
No 350
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=76.55 E-value=3.3 Score=44.02 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=32.8
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHH
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~ 353 (1232)
.++.|.+|...+|+|||..|.+++..+...+ .+++.+. ...+..+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~----~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFIT----ASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE----HHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEee----cCceecccc
Confidence 5678899999999999999999999888754 2566654 344445554
No 351
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=76.48 E-value=1.7 Score=51.25 Aligned_cols=62 Identities=26% Similarity=0.581 Sum_probs=41.5
Q ss_pred ccccccccC-----CCCeeecCCCCCccccCcCCCCC-CCCCC-------CCCCCCccCCCCcccccccccccccCccC
Q 000903 51 DDSCQACGE-----SENLMSCDTCTYAYHAKCLVPPL-KAPPS-------GSWRCPECVSPLNDIDKILDCEMRPTVAG 116 (1232)
Q Consensus 51 ~~~C~~C~~-----~~~ll~Cd~C~~~~H~~Cl~p~l-~~~p~-------~~W~C~~C~~~~~~iekIL~~R~~p~~~~ 116 (1232)
-.+|.||-. .++++.||.|+-..|-.|..-.- .++|+ ..|||..|..-... =.|.+.|...+
T Consensus 119 ~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~----P~CElCPn~~G 193 (707)
T KOG0957|consen 119 AVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL----PHCELCPNRFG 193 (707)
T ss_pred ceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC----CccccCCCcCC
Confidence 348999964 35699999999999999985431 12332 46999999864321 23555565443
No 352
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.34 E-value=0.75 Score=50.34 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=39.5
Q ss_pred cccccccCC---------CCeeecCCCCCccccCcCCCCCCC---CCCCCCCCCccCC-----CCccccccccccc
Q 000903 52 DSCQACGES---------ENLMSCDTCTYAYHAKCLVPPLKA---PPSGSWRCPECVS-----PLNDIDKILDCEM 110 (1232)
Q Consensus 52 ~~C~~C~~~---------~~ll~Cd~C~~~~H~~Cl~p~l~~---~p~~~W~C~~C~~-----~~~~iekIL~~R~ 110 (1232)
..|..|-++ ..+++|..|.-++|++|+.-+..- +-.-.|.|..|.- .+..-+.++.|.+
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~ 334 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDV 334 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheecccc
Confidence 458888654 239999999999999999655322 2245799999872 1223345565543
No 353
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=76.30 E-value=5.3 Score=43.47 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=23.6
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
-.+.|++...|+|||..+.+++..|+..
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 4568999999999999999888887653
No 354
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=76.20 E-value=12 Score=45.61 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=26.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEe
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~ 340 (1232)
...+++-..|.|||.++.-++.++...+..+.||-+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 346788999999999998888887765443444433
No 355
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=76.19 E-value=0.95 Score=41.46 Aligned_cols=43 Identities=28% Similarity=0.704 Sum_probs=29.3
Q ss_pred cccccCCCC---eeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCC
Q 000903 54 CQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1232)
Q Consensus 54 C~~C~~~~~---ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1232)
|..|.-+|+ ++.+ .|...||+.|+...+... ...=.||-|..+
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 444444444 4444 499999999998887764 334489999864
No 356
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=76.09 E-value=24 Score=37.51 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.9
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
...+|..+.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 346789999999999999999888754
No 357
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=76.00 E-value=2.9 Score=54.05 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=71.8
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHH-HhhCCCCCeEEEeCCccH-----HHHHHHHHHHcCCCcEEEEEcChhHHHHH
Q 000903 301 WSKQTHVILADEMGLGKTIQSIAFLAS-LFGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNII 374 (1232)
Q Consensus 301 ~~~~~~~ILaDemGLGKTiqaia~l~~-l~~~~~~p~LIV~P~sll-----~qW~~E~~~~~p~~~vv~~~g~~~~r~~i 374 (1232)
++...+.++.+.+|.|||+.+-..+.. +.....+.+.+|+|...+ ..|..-+. .|+++++-..|....-
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd--- 1014 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD--- 1014 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC---
Confidence 345667889999999999998544444 444444699999995433 45765543 2466666666653211
Q ss_pred HHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCC----ceeEEEEcCcccccCc
Q 000903 375 REYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVDEGHRLKNK 443 (1232)
Q Consensus 375 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i----~w~~vIvDEaHrlKn~ 443 (1232)
.......+++|||++............ .+..+|+||.|-++..
T Consensus 1015 --------------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 --------------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred --------------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 012245689999999876543322221 3457999999988654
No 358
>PRK13342 recombination factor protein RarA; Reviewed
Probab=75.38 E-value=14 Score=44.67 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.3
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 000903 305 THVILADEMGLGKTIQSIAFLASL 328 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l 328 (1232)
.+.||.-+.|+|||..+-++...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998887766543
No 359
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=75.27 E-value=10 Score=46.24 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=26.6
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
+..+|..+.|+|||..+-++...+...+ .+++.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG-GKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEeeH
Confidence 4578999999999999888888876543 35555543
No 360
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=74.54 E-value=15 Score=37.39 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=37.7
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCceEEEeeccccccccccCC--CCEEEEEcCCC
Q 000903 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADTVIIYDSDW 706 (1232)
Q Consensus 652 ~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTragg~GINL~~--ad~VIi~D~dW 706 (1232)
..+-|. ...+...+++.|...... .+|+++....+|||++. +..||+.-.|+
T Consensus 26 i~~e~~-~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQGE-DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeCC-ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 334343 334578899999865432 46788877999999985 68899998776
No 361
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.28 E-value=2.2 Score=51.18 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=41.7
Q ss_pred ccccccccccCCCCeeecCCCCCccccCcCCCCCCCC-CCCCCCCCccCCCC
Q 000903 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVSPL 99 (1232)
Q Consensus 49 ~~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~~~ 99 (1232)
..+.+|..|.-.|..+.|+.|-|+||..|+.|..... .+..|.||.|.+..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccccC
Confidence 4568999999999999999999999999998764332 24569999998643
No 362
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=74.06 E-value=0.61 Score=59.81 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=42.2
Q ss_pred ccccccccccCCCCeeecCC-CCCcccc-CcCCCC--CCCCCCCCCCCCccCCCC
Q 000903 49 AKDDSCQACGESENLMSCDT-CTYAYHA-KCLVPP--LKAPPSGSWRCPECVSPL 99 (1232)
Q Consensus 49 ~~~~~C~~C~~~~~ll~Cd~-C~~~~H~-~Cl~p~--l~~~p~~~W~C~~C~~~~ 99 (1232)
.....|.+|+..+.++||++ |+..||+ .||+-. -...+++-|.|++|.-..
T Consensus 426 fi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq 480 (1414)
T KOG1473|consen 426 FISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ 480 (1414)
T ss_pred ceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence 45677999999999999987 9999999 999732 345788999999997543
No 363
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=73.88 E-value=10 Score=43.78 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=25.0
Q ss_pred CCCc-eEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 303 KQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 303 ~~~~-~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
+... .+|....|+|||..|.++...+....
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 3445 78899999999999999999998653
No 364
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=73.82 E-value=16 Score=43.81 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHH-Hhhc--CCCceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 287 HPYQLEGLNFLR-FSWS--KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 287 ~pyQ~~gv~wL~-~~~~--~~~~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
|+-|++-+.-.. .... ...+++|.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 566666653332 2222 335689999999999999988888776543
No 365
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=73.45 E-value=25 Score=35.50 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=26.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCcc
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sl 344 (1232)
.+|.-..|+|||..+..++..+... .++++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcc
Confidence 4677889999999998888877553 346777666433
No 366
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=73.25 E-value=6.2 Score=48.51 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCC-----CCeEEEeCCccHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-----SPHLVVAPLSTLRNWERE 351 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~-----~p~LIV~P~sll~qW~~E 351 (1232)
++.+-|-+.++. ..++-.|+.-..|+|||..|+-=+++|+.... +|+||+.|+-++......
T Consensus 212 TIQkEQneIIR~-----ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 212 TIQKEQNEIIRF-----EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred HhhHhHHHHHhc-----cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 344556665432 45566788899999999999888888875432 489999999888665443
No 367
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.02 E-value=28 Score=39.55 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=29.8
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC-C---ccHHHHHH
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWER 350 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P-~---sll~qW~~ 350 (1232)
.+....+.-..|.|||..+..++..+...+ ..+.+|.- . ..+.||..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~ 124 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQD 124 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHH
Confidence 345667888899999998777766665432 34555544 2 34556653
No 368
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.01 E-value=2 Score=49.82 Aligned_cols=44 Identities=27% Similarity=0.640 Sum_probs=35.1
Q ss_pred cccccccCC---CCeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCC
Q 000903 52 DSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1232)
Q Consensus 52 ~~C~~C~~~---~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1232)
+.|.+|-+. |+.|+==-|...||..|.+|.|... .=+||-|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 689999863 6666667789999999999998763 3379999973
No 369
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=72.89 E-value=1.2 Score=58.19 Aligned_cols=25 Identities=48% Similarity=1.136 Sum_probs=22.8
Q ss_pred hHhhhhccCCCcccccccchhhHHH
Q 000903 131 KQYLVKWKGLSYLHCTWVPEKEFLK 155 (1232)
Q Consensus 131 ~eYlVKWkg~Sy~h~tW~pe~~L~~ 155 (1232)
.+|||||+|.+|-.|||++++.+..
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~ 324 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAK 324 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhh
Confidence 6999999999999999999987753
No 370
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=72.64 E-value=16 Score=40.68 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=33.1
Q ss_pred hcCCC-ceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHH------HHHHHHHH
Q 000903 301 WSKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR------NWEREFAT 354 (1232)
Q Consensus 301 ~~~~~-~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~------qW~~E~~~ 354 (1232)
...++ -+.+.-+.|+|||+..=+++..+-.. ...+|+.|+.++. -|..++..
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 34444 46688999999999887555554322 2445788876663 35555543
No 371
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.18 E-value=45 Score=41.44 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=25.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhCCC-CCeEEEe
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVA 340 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~~~-~p~LIV~ 340 (1232)
.++..+|.-..|.|||..+..++..+..... ..+.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4555667889999999998777776654432 3455553
No 372
>PTZ00293 thymidine kinase; Provisional
Probab=71.86 E-value=11 Score=41.04 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=25.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCc
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~s 343 (1232)
-++.-.||+|||...|-.+...... ..+++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~a-g~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTYS-EKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHc-CCceEEEEecc
Confidence 3568899999998776665544332 34889998853
No 373
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=71.73 E-value=17 Score=42.23 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
|-+++..|......+ ..-++..+.|.||+..|.+++..++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 556666666666655 3467899999999999999999987653
No 374
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=71.69 E-value=9.4 Score=37.43 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=25.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll 345 (1232)
.+|.-+.|+|||..+-.++..+. .+++.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----cccccccccccc
Confidence 36778999999999888777751 256666665554
No 375
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=71.51 E-value=12 Score=46.48 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=23.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
....+++|.-++|+|||..+-+++..+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 34678899999999999998888877643
No 376
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=71.30 E-value=31 Score=45.07 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=31.3
Q ss_pred CcHHHHHHHHH-HHHhhcC-C-CceE-EEcCCCCcHHHHHHHHHHHHhh
Q 000903 286 LHPYQLEGLNF-LRFSWSK-Q-THVI-LADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 286 L~pyQ~~gv~w-L~~~~~~-~-~~~I-LaDemGLGKTiqaia~l~~l~~ 330 (1232)
=|+-|++.|.. |...... + .++| |.-.+|+|||.++-.++..|..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47788887744 4333332 2 2344 8999999999999888877753
No 377
>PRK10865 protein disaggregation chaperone; Provisional
Probab=70.56 E-value=14 Score=49.05 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 294 LNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 294 v~wL~~~~--~~~~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
++.++..+ ....+.||.-+.|.|||..+-+++..+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 55555432 34668999999999999999888877654
No 378
>PLN03212 Transcription repressor MYB5; Provisional
Probab=70.48 E-value=8.5 Score=42.36 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCcCHHHHHHHHHHHHhhhhhhHHHhhc
Q 000903 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVD 1109 (1232)
Q Consensus 1082 ~~w~~eeD~~LL~~i~~~Gyg~we~Ik~ 1109 (1232)
..||.|||..||..+.+|| .+|..|-.
T Consensus 79 gpWT~EED~lLlel~~~~G-nKWs~IAk 105 (249)
T PLN03212 79 GGITSDEEDLILRLHRLLG-NRWSLIAG 105 (249)
T ss_pred CCCChHHHHHHHHHHHhcc-ccHHHHHh
Confidence 5899999999999999999 68999843
No 379
>PLN03212 Transcription repressor MYB5; Provisional
Probab=70.47 E-value=3.8 Score=45.00 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=25.5
Q ss_pred CCCcCHHHHHHHHHHHHhhhhhhHHHhh
Q 000903 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIV 1108 (1232)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~~~Gyg~we~Ik 1108 (1232)
...||.|||-.|+..|.+||-++|..|-
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IA 52 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLP 52 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 3579999999999999999999999984
No 380
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=69.71 E-value=24 Score=43.35 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 290 Q~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
|-..+.+|......+ ...|+.-+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 445566665555544 235789999999999999999988654
No 381
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=69.62 E-value=60 Score=38.81 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=40.9
Q ss_pred ecHHHHhhcccccCCCceeEEEEcCcccccCcccHHH--HHHHhc--ccccEEEEecCCCCCCHHHHHHHHhhhcCCC
Q 000903 412 TSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLF--SSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGK 485 (1232)
Q Consensus 412 tsye~l~~d~~~l~~i~w~~vIvDEaHrlKn~~S~~~--~~l~~l--~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~ 485 (1232)
.+..-+......+.. .++|.||=+-|---...++. .++... ....-|.||+|-=...+.+++..+..+...-
T Consensus 267 ~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 267 YSPKELAEAIEALRD--CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred cCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 333334333344433 37899996654322221211 222222 2346789999988888888888887776543
No 382
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=69.59 E-value=2 Score=36.73 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.1
Q ss_pred cchhhhhhhccCCCcceeEEeeeccc
Q 000903 192 TTVDRILACRGEDDEKEYLVKYKELS 217 (1232)
Q Consensus 192 ~~verIi~~r~~~~~~eyLVKWkgL~ 217 (1232)
+.+|+||+..+..|+..|||||++.+
T Consensus 3 l~~E~Ivg~~d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGATDTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEEECTSSEEEEEEETTSS
T ss_pred CChHHHheeecCCCcEEEEEEECCCC
Confidence 46789998887789999999999976
No 383
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=69.47 E-value=12 Score=39.46 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=38.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
.+|+-+.|+|||..++.++......+ .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHc
Confidence 57889999999999999988776443 4899999888887777766655
No 384
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=69.46 E-value=18 Score=42.83 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=18.7
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHH
Q 000903 304 QTHVILADEMGLGKTIQSIAFLAS 327 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~ 327 (1232)
-.+.||.-..|+|||..|-.+..+
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999876555543
No 385
>PRK11823 DNA repair protein RadA; Provisional
Probab=69.45 E-value=13 Score=45.45 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=42.1
Q ss_pred HHHHHHH-hhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 293 GLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 293 gv~wL~~-~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
+++.+.. .+..+.-.+|.-++|.|||..++.++..+... ..++|.|.-.....+......++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHHc
Confidence 4444432 33455567899999999999999988876533 24788888766666665544443
No 386
>CHL00095 clpC Clp protease ATP binding subunit
Probab=69.25 E-value=2.3e+02 Score=37.73 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
.+++-++|.|||..|-++...++..
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Confidence 5799999999999999988887644
No 387
>PRK14873 primosome assembly protein PriA; Provisional
Probab=68.58 E-value=21 Score=45.78 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHhhC-C-CcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEee
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-K-WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~~~-g-~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~Lls 683 (1232)
.|||.+....++......|+.+||...-+.....+...|..+ | ..+..+++..+..+|.+...+...+.. .|+|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~---~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA---RVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC---cEEEE
Confidence 689999999999999999999999999998888888877654 3 679999999999999988877765433 37889
Q ss_pred ccccccccccCCCCEEEEEc
Q 000903 684 TRAGGLGINLATADTVIIYD 703 (1232)
Q Consensus 684 Tragg~GINL~~ad~VIi~D 703 (1232)
||++-. .=+..-..||+.|
T Consensus 247 tRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cceeEE-eccCCCCEEEEEc
Confidence 988531 2233344555543
No 388
>PRK07952 DNA replication protein DnaC; Validated
Probab=68.36 E-value=16 Score=40.88 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHh---hcC-CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHH
Q 000903 288 PYQLEGLNFLRFS---WSK-QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1232)
Q Consensus 288 pyQ~~gv~wL~~~---~~~-~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~ 354 (1232)
+.|..++..+... +.. ..+.+|.-..|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEE----EHHHHHHHHHH
Confidence 3465566554322 222 24678999999999999999999887654 255555 35666666653
No 389
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=67.48 E-value=43 Score=45.26 Aligned_cols=59 Identities=14% Similarity=-0.026 Sum_probs=41.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH
Q 000903 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1232)
Q Consensus 283 ~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll 345 (1232)
+..|.+-|.+++..+. ..+.-++|.-.-|+|||.+.-++...+... ...++.++|..--
T Consensus 379 ~~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G~~V~g~ApTgkA 437 (1102)
T PRK13826 379 HARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA-GYRVVGGALAGKA 437 (1102)
T ss_pred CCCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEcCcHHH
Confidence 3579999999998652 335557889999999998766655444333 2477888886543
No 390
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=67.29 E-value=0.53 Score=41.83 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=19.6
Q ss_pred cccccccCC----CC--eeecC--CCCCccccCcCCCCCCCCCC-------CCCCCCccCCC
Q 000903 52 DSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPPS-------GSWRCPECVSP 98 (1232)
Q Consensus 52 ~~C~~C~~~----~~--ll~Cd--~C~~~~H~~Cl~p~l~~~p~-------~~W~C~~C~~~ 98 (1232)
..|.+|... +. .+.|+ .|...||..||--.+...+. -.+.||.|..+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 458888742 22 58898 89999999999655432211 23569999853
No 391
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=67.27 E-value=34 Score=35.68 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=24.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
.++....|.|||..+..++..+...+....+|-++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 46778999999999988888876664323334444
No 392
>PRK06835 DNA replication protein DnaC; Validated
Probab=66.57 E-value=13 Score=43.48 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHHHHH----HhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 284 GSLHPYQLEGLNFLR----FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~----~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
+..+.++..++..+. ..-..+.+.+|.-++|+|||..+.+++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 456666666665432 2222467888999999999999999999887664
No 393
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=66.52 E-value=46 Score=38.94 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHHhhcCCCc-eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~-~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
++|+|...-.-+.....+-.+ .++....|+|||..|..++..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 467777776556555444334 5689999999999999999988753
No 394
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=66.02 E-value=14 Score=31.51 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=35.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCcc-hhhhchhhc-CC-CHHHHHHHHHHHHH
Q 000903 968 GFSQNQRAAFVQILMRFGVGDFD-WKEFTPRLK-QK-SYEEIREYGILFLT 1015 (1232)
Q Consensus 968 GF~~~~rr~F~~a~~kyG~~~~~-~~~i~~el~-~K-s~~Evk~Y~~~F~~ 1015 (1232)
.+|+-+-..|+.++..||.+++. -..|+..+. .. |..+|+..+..+..
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 35677788999999999987641 156766554 34 89999988776543
No 395
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.61 E-value=33 Score=41.36 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q 000903 307 VILADEMGLGKTIQSIAFLASL 328 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l 328 (1232)
.++.-..|.|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999998888755
No 396
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=65.55 E-value=20 Score=46.59 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.5
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHH
Q 000903 305 THVILADEMGLGKTIQSIAFLASL 328 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l 328 (1232)
.+.||.-+.|+|||..+-++...+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999998887766543
No 397
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=65.28 E-value=57 Score=35.83 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=26.1
Q ss_pred ceeEEEEcCcccccCccc---HHHHHHHhcc-cccEEEEecC
Q 000903 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGT 465 (1232)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S---~~~~~l~~l~-~~~rllLTGT 465 (1232)
..++||||..|.+.+... .++..+..+. ...++++|+-
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 467999999999988643 4444444443 4567888873
No 398
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=64.90 E-value=39 Score=44.24 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
...+.||.-+.|+|||..+-+++..+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46689999999999999988888777553
No 399
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=64.66 E-value=19 Score=36.49 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHh-h---CCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEEeecc
Q 000903 610 LQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-F---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1232)
Q Consensus 610 l~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~-~---~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~LlsTr 685 (1232)
..++.+|+.+....|+||+|+|+....++.|.+.|= . .-++..+ .|.-... ... |+|++.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~~~------------~~P---V~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPPAA------------RQP---VLITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SSTT--------------S---EEEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCCCC------------CCe---EEEecC
Confidence 588899999999999999999999999999999992 2 2333333 2221110 112 566655
Q ss_pred ccccccccCCCCEEEEEcCCC
Q 000903 686 AGGLGINLATADTVIIYDSDW 706 (1232)
Q Consensus 686 agg~GINL~~ad~VIi~D~dW 706 (1232)
... -....++++|++++.+
T Consensus 79 ~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp TS------S--SEEEE--SS-
T ss_pred ccc--CCCCCCCEEEECCCCC
Confidence 432 2344589999999887
No 400
>PLN03091 hypothetical protein; Provisional
Probab=64.64 E-value=6.4 Score=46.66 Aligned_cols=28 Identities=36% Similarity=0.723 Sum_probs=25.7
Q ss_pred CCCcCHHHHHHHHHHHHhhhhhhHHHhh
Q 000903 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIV 1108 (1232)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~~~Gyg~we~Ik 1108 (1232)
...|+.|||..|+..|.+||-++|..|-
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IA 41 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVP 41 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHh
Confidence 3579999999999999999999999985
No 401
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=64.46 E-value=49 Score=38.88 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
..||.-+.|+|||..+..++..+...
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35789999999999999988887643
No 402
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.26 E-value=89 Score=39.98 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 291 LEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 291 ~~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
...+..|...+.++ ...|+..+.|.|||..+..++..+..
T Consensus 23 ~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 23 EALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33343344444443 23579999999999988888887754
No 403
>PRK05973 replicative DNA helicase; Provisional
Probab=64.17 E-value=18 Score=40.29 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=41.6
Q ss_pred HHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 297 L~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
+.-.+..+.-.+|+..+|+|||+-++.|+...... ..+++++.-...-.+-.+.+..+
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHHHHc
Confidence 33455677778999999999999999998876544 24888887765555555554443
No 404
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=64.17 E-value=9.4 Score=40.29 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=37.2
Q ss_pred ccccCCCceeEEEEcCcccccCcc----cHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhh
Q 000903 421 SASLKPIKWQCMIVDEGHRLKNKD----SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHF 480 (1232)
Q Consensus 421 ~~~l~~i~w~~vIvDEaHrlKn~~----S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~f 480 (1232)
...+..-.|++||+||.-..-+.. ..+...|..-....-+.|||.-.+..+.|+..++.-
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTE 153 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTE 153 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeee
Confidence 445556689999999986544322 344455555445567999998554444444444433
No 405
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=63.92 E-value=26 Score=37.60 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=39.4
Q ss_pred ccccCCCceeEEEEcCcccccCc----ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHhhhcC
Q 000903 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1232)
Q Consensus 421 ~~~l~~i~w~~vIvDEaHrlKn~----~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p 483 (1232)
...+..-.|++||+||.-..-+. ...+...|..-...--|.|||--....+.|+..++.-+.+
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 44556678999999998665442 2344455554445567999998655555555555544443
No 406
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=63.76 E-value=2.8 Score=47.30 Aligned_cols=66 Identities=20% Similarity=0.462 Sum_probs=41.4
Q ss_pred ccccccccccccCCC-----CeeecCCCCCcc--------ccCcCCCCCCCCCC-CCCCCCccC-----CCCcccccccc
Q 000903 47 IDAKDDSCQACGESE-----NLMSCDTCTYAY--------HAKCLVPPLKAPPS-GSWRCPECV-----SPLNDIDKILD 107 (1232)
Q Consensus 47 ~~~~~~~C~~C~~~~-----~ll~Cd~C~~~~--------H~~Cl~p~l~~~p~-~~W~C~~C~-----~~~~~iekIL~ 107 (1232)
++..+..|.+||+.- .|+-|.+|...| |+.|....-..+.. ..=.||.|. ..+...|.+-+
T Consensus 11 dedl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQKCLtvGMklEAVRA 90 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQKCLTVGMKLEAVRA 90 (475)
T ss_pred ccccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHHHhhhhhhHHHHHH
Confidence 344567899999742 299999998776 56676433332221 234688776 33455666666
Q ss_pred ccccc
Q 000903 108 CEMRP 112 (1232)
Q Consensus 108 ~R~~p 112 (1232)
-|||-
T Consensus 91 DRMRG 95 (475)
T KOG4218|consen 91 DRMRG 95 (475)
T ss_pred hhhcc
Confidence 66654
No 407
>CHL00206 ycf2 Ycf2; Provisional
Probab=63.61 E-value=17 Score=50.87 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=32.5
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHH
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW 348 (1232)
...+|++|...+|+|||+.|=|++... .-|++-|.....+..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcc
Confidence 456688899999999999887766642 2388877777777665
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=63.60 E-value=39 Score=41.10 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=25.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
.+++-..|.|||.++.-++.++......++++|+-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 56788999999999999888887662234444443
No 409
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=63.51 E-value=5.2 Score=43.40 Aligned_cols=39 Identities=26% Similarity=0.842 Sum_probs=29.9
Q ss_pred cccccccccCCC--------CeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCC
Q 000903 50 KDDSCQACGESE--------NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1232)
Q Consensus 50 ~~~~C~~C~~~~--------~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1232)
..-.|.+|+.++ ....|..|...||..|... . .||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHh
Confidence 456788887653 3789999999999999852 1 3999974
No 410
>smart00300 ChSh Chromo Shadow Domain.
Probab=63.04 E-value=5.2 Score=34.54 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.6
Q ss_pred cchhhhhhhccCCCcceeEEeeec
Q 000903 192 TTVDRILACRGEDDEKEYLVKYKE 215 (1232)
Q Consensus 192 ~~verIi~~r~~~~~~eyLVKWkg 215 (1232)
..+|+|++..+.+++..|||||++
T Consensus 7 ~~~e~Ivg~~d~~G~l~flikwk~ 30 (61)
T smart00300 7 KSWEDIVGITKDDGELTFLIKWKD 30 (61)
T ss_pred CCHHHHhceecCCCeEEEEEEEeC
Confidence 467899999888899999999999
No 411
>CHL00095 clpC Clp protease ATP binding subunit
Probab=62.09 E-value=27 Score=46.35 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=23.4
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
...+.||.-+.|.|||..+-+++..+..
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568899999999999999888777654
No 412
>PRK10865 protein disaggregation chaperone; Provisional
Probab=61.88 E-value=4.7e+02 Score=35.01 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
..++.-++|+|||..|-++...++..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 46789999999999998888777543
No 413
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=61.74 E-value=28 Score=46.31 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.3
Q ss_pred HHHHHHHhhc--CCCceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 293 gv~wL~~~~~--~~~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
-+..++..+. ...+.||.-+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4666655433 4567899999999999999888777654
No 414
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=61.66 E-value=19 Score=40.69 Aligned_cols=50 Identities=14% Similarity=-0.002 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 288 pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
|+...-+..+......+...+|..+.|+|||..|-++...+ ..|++.++=
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~~ 54 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLING 54 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEeC
Confidence 44455555555666788899999999999999998877643 237766643
No 415
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=61.50 E-value=2.8e+02 Score=33.12 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=77.9
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH---HHHHHHHHHHcCC
Q 000903 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL---RNWEREFATWAPQ 358 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~--~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll---~qW~~E~~~~~p~ 358 (1232)
...|.+|+..+.-|+..-.. ....+|....|+|||..+-.++..+ .-|+..+++.... .-|..-+.+-.
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~~-- 81 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKSQ-- 81 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHhc--
Confidence 34789999998766433222 2234789999999999888777765 2366666664322 34555444431
Q ss_pred CcEEEEEcChhHH--HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcC
Q 000903 359 MNVVMYVGTSQAR--NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (1232)
Q Consensus 359 ~~vv~~~g~~~~r--~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDE 436 (1232)
..-+.|....- ..+ ..|.-++..++.+.+. -.--++|+|-
T Consensus 82 --~~d~dg~~~~~~~en~------------------------------~d~i~~l~q~~~~t~~------d~~~~liLDn 123 (438)
T KOG2543|consen 82 --LADKDGDKVEGDAENF------------------------------SDFIYLLVQWPAATNR------DQKVFLILDN 123 (438)
T ss_pred --cCCCchhhhhhHHHHH------------------------------HHHHHHHHhhHHhhcc------CceEEEEEcC
Confidence 00111111100 000 0111111111121111 1123799999
Q ss_pred cccccCcccHHHHHHHhcc-----cccEEEEecCCCC
Q 000903 437 GHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQ 468 (1232)
Q Consensus 437 aHrlKn~~S~~~~~l~~l~-----~~~rllLTGTPlq 468 (1232)
|..+....+.+.+.+..+. ..-+++++.++..
T Consensus 124 ad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 124 ADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred HHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 9999998888888877663 3456788887743
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=61.08 E-value=38 Score=41.15 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=25.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEe
Q 000903 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~ 340 (1232)
-.+++-..|.|||.++.-++.++......++++|.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 36789999999999999988887632223444443
No 417
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=60.63 E-value=16 Score=39.20 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=23.8
Q ss_pred eeEEEEcCcccccCcccHHHHHHHhccc--ccEEEEecC
Q 000903 429 WQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGT 465 (1232)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l~~--~~rllLTGT 465 (1232)
.++|+|||||-+.. .+...|..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999998854 45556666654 456666664
No 418
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=60.46 E-value=6.4 Score=43.87 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCcCHHHHHHHHHHHHhhhhhhHHHhhcCccC
Q 000903 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDL 1113 (1232)
Q Consensus 1082 ~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l 1113 (1232)
-.|+.|||..|...|-+||-|+|-.|-.+..|
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl 41 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGL 41 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCC
Confidence 36999999999999999999999999887754
No 419
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=60.41 E-value=8.5 Score=47.08 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=38.1
Q ss_pred cccccccccCCCCeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCC
Q 000903 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1232)
Q Consensus 50 ~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1232)
+.+.|.+|.++|+++.|+.|..++|-.|. ....|.+.|.|..|...
T Consensus 88 ~~~~c~vc~~ggs~v~~~s~~~~~~r~c~---~~~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 88 EPSECFVCFKGGSLVTCKSRIQAPHRKCK---PAQLEKCSKRCTDCRAF 133 (463)
T ss_pred CcchhccccCCCccceeccccccccccCc---CccCcccccCCcceeee
Confidence 45889999999999999999999999995 24567788888777653
No 420
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=60.33 E-value=17 Score=42.47 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 281 ~~~~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
+..+.+.+.|.+-+ ......+.+.|++-.||+|||...-+++..+..
T Consensus 124 v~~g~~~~~~~~~L---~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 124 VTSKIMTEAQASVI---RSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHcCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34466777776554 444566788999999999999988777776643
No 421
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=60.17 E-value=29 Score=44.78 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC-CCC--CeEEEeC-CccHHHHHHHHHHHc
Q 000903 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAP-LSTLRNWEREFATWA 356 (1232)
Q Consensus 286 L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~-~~~--p~LIV~P-~sll~qW~~E~~~~~ 356 (1232)
|.|-|..+|++ ..+.+++-...|+|||.+.+.-+.++... +.. .+|+|+. .....+-++.+.+..
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 77899998863 35677777899999999999999998864 333 5777766 455566677776654
No 422
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=59.31 E-value=70 Score=33.38 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=36.2
Q ss_pred ccccCCCceeEEEEcCcccccCc----ccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHH
Q 000903 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLM 478 (1232)
Q Consensus 421 ~~~l~~i~w~~vIvDEaHrlKn~----~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll 478 (1232)
...+..-.+++||+||.=..-+. ...+...+..-....-++|||--.+..+.|+..++
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCcee
Confidence 34455668999999998665332 23455555554555679999986555555544443
No 423
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.21 E-value=17 Score=43.63 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=37.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
-++.+|+-+.|.|||..+.+++... ...|-=|.|.++..-|.-|-++.
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~----~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATES----GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhh----cceEeeccHHHhhhhccChHHHH
Confidence 3466899999999999988877753 23567788899999887776543
No 424
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=58.95 E-value=4.5 Score=34.03 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=18.2
Q ss_pred hhhhhhhccCC-CcceeEEeeec
Q 000903 194 VDRILACRGED-DEKEYLVKYKE 215 (1232)
Q Consensus 194 verIi~~r~~~-~~~eyLVKWkg 215 (1232)
+++|++....+ |+..||+||++
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~ 24 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD 24 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC
Confidence 56788777655 89999999999
No 425
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=58.70 E-value=16 Score=47.13 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC-CC--CCeEEEeCCc-cHHHHHHHHHHH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLS-TLRNWEREFATW 355 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~-~~--~p~LIV~P~s-ll~qW~~E~~~~ 355 (1232)
.|.|-|.++|.+ ..+.+++....|+|||.+.+.-+.+|... +. ..+|+|+.+. ....-...+...
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478899999863 34667777789999999999999999864 43 3688888843 333444444443
No 426
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.61 E-value=31 Score=40.68 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=34.2
Q ss_pred CceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 305 ~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
+++++.-..|+|||+.|=|+.... ...|.=|.-..+.+.|.-|-++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc----~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC----GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh----cCeEEEechhhhhhhhccchHHH
Confidence 678999999999999887766542 12455555566678898876654
No 427
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=58.59 E-value=1.1e+02 Score=37.15 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=24.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
..++--.|.|||.++.-++.++...+. ++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 457889999999999888887765543 4555543
No 428
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=58.42 E-value=24 Score=44.61 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=65.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCC-----CCCeEEEeC-CccHHHHHHHHHHHcCC
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAP-LSTLRNWEREFATWAPQ 358 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~-----~~p~LIV~P-~sll~qW~~E~~~~~p~ 358 (1232)
.|..-|+.+...+ ....-.|+.-..|+|||.+++-++..|+... .-|+||||= ++.+.|...-+-.. .
T Consensus 378 ildsSq~~A~qs~----ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~--q 451 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSK----LTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH--Q 451 (1025)
T ss_pred eecHHHHHHHHHH----hhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--C
Confidence 4677888887655 3345578999999999999999998888653 239999998 57788876665542 4
Q ss_pred CcEEEEEcChhHHHHHHHhhhc
Q 000903 359 MNVVMYVGTSQARNIIREYEFY 380 (1232)
Q Consensus 359 ~~vv~~~g~~~~r~~i~~~e~~ 380 (1232)
-..++..|+......++.+.+.
T Consensus 452 rpsImr~gsr~~spyLk~~n~~ 473 (1025)
T KOG1807|consen 452 RPSIMRQGSRFFSPYLKVHNYL 473 (1025)
T ss_pred CceEEEeccccCCHHHHHHHHH
Confidence 4567778887666666655544
No 429
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=57.66 E-value=17 Score=45.40 Aligned_cols=44 Identities=16% Similarity=0.044 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS 327 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~ 327 (1232)
.++++-|++-.+-|+.....|+=||+-..||+|||+..|.....
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaalt 57 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALT 57 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHH
Confidence 67888999999989999999999999999999999987655443
No 430
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=57.26 E-value=2.7 Score=46.08 Aligned_cols=59 Identities=31% Similarity=0.613 Sum_probs=40.4
Q ss_pred cccccccccCC----------CCeeecCCCCCccccCcCCCCC---CCCCCCCCCCCccCCC-----Cccccccccc
Q 000903 50 KDDSCQACGES----------ENLMSCDTCTYAYHAKCLVPPL---KAPPSGSWRCPECVSP-----LNDIDKILDC 108 (1232)
Q Consensus 50 ~~~~C~~C~~~----------~~ll~Cd~C~~~~H~~Cl~p~l---~~~p~~~W~C~~C~~~-----~~~iekIL~~ 108 (1232)
...+|-.|-.+ .+|+.|..|+|+=|++||.-.. ..+-.-.|.|-+|..- ...-+.+|.|
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfc 299 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFC 299 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEee
Confidence 34678888532 3499999999999999994321 1234568999999842 1223567766
No 431
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=56.82 E-value=17 Score=42.82 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCcc
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sl 344 (1232)
.|+..+|+.+.|+|||..|+++...|-.. -||..++-..+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~--~PF~~isgSEi 88 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGED--VPFVSISGSEI 88 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTT--S-EEEEEGGGG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCC--CCeeEccccee
Confidence 46677899999999999999999887433 38888876443
No 432
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=56.61 E-value=18 Score=39.65 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=41.0
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHHc
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~~ 356 (1232)
-.+.-.+|+-+.|+|||+.++.|+..-......++++|+-.....+..+.+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC
Confidence 4556678999999999999999887665541238899988888888888887664
No 433
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=56.23 E-value=21 Score=46.49 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
...+.||.-+.|+|||..+-++...+...
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46788999999999999987777665443
No 434
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=55.68 E-value=27 Score=42.84 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=39.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHH
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~ 354 (1232)
..+.-.+|+-++|.|||..++.++..+...+ +++|.|.......|......+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCCHHHHHHHHHH
Confidence 4555678999999999999999888776543 488999887777776554444
No 435
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=54.56 E-value=1.5 Score=34.90 Aligned_cols=40 Identities=33% Similarity=0.722 Sum_probs=26.9
Q ss_pred cccccccCC----CCeeecCCCCCccccCcCCCCCCCCCCCCCCCCccC
Q 000903 52 DSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1232)
Q Consensus 52 ~~C~~C~~~----~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 96 (1232)
+.|.+|... ..++... |+..||..|+...+... -.||.|.
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 358888763 2344444 99999999997766542 2788883
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=54.24 E-value=55 Score=36.81 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=19.2
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHH
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLAS 327 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~ 327 (1232)
..|..+++.-+.|.|||..+-.++..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56788888889999999655444433
No 437
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=54.22 E-value=29 Score=45.33 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC-CC--CCeEEEeCC-ccHHHHHHHHHHHc
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWA 356 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~-~~--~p~LIV~P~-sll~qW~~E~~~~~ 356 (1232)
.|-|-|.++|. ...+.+++....|+|||.+.+.-+.+|... +. ..+|+|+.+ .....-+.-+.+..
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 48899999986 345677888899999999999999999864 33 368888884 44455555555554
No 438
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=54.14 E-value=22 Score=39.70 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=24.0
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCCCCeEEE--eCCccH
Q 000903 311 DEMGLGKTIQSIAFLASLFGERISPHLVV--APLSTL 345 (1232)
Q Consensus 311 DemGLGKTiqaia~l~~l~~~~~~p~LIV--~P~sll 345 (1232)
--=|.|||..+.++...|...+. ++|+| +|.+.+
T Consensus 9 ~kGGvG~TTltAnLA~aL~~~G~-~VlaID~dpqN~L 44 (243)
T PF06564_consen 9 PKGGVGKTTLTANLAWALARLGE-SVLAIDLDPQNLL 44 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCcHHHH
Confidence 34489999999998888876653 56665 555544
No 439
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=54.04 E-value=1.3e+02 Score=35.24 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEe
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~ 340 (1232)
..|.-..|.|||.++..++..+...+ +.++++.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~ 149 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAA 149 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 44677999999999888887776543 3555554
No 440
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=53.91 E-value=6 Score=38.31 Aligned_cols=29 Identities=31% Similarity=0.850 Sum_probs=25.2
Q ss_pred ccccccccCC-CCeeecCC--CCCccccCcCC
Q 000903 51 DDSCQACGES-ENLMSCDT--CTYAYHAKCLV 79 (1232)
Q Consensus 51 ~~~C~~C~~~-~~ll~Cd~--C~~~~H~~Cl~ 79 (1232)
...|.+|+.. |-.+.|.. |...||..|..
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 5789999985 77999987 99999999973
No 441
>CHL00176 ftsH cell division protein; Validated
Probab=53.65 E-value=61 Score=41.55 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEe
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~ 340 (1232)
..+++|.-+.|+|||..|=+++..+ ..|++.+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~----~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA----EVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----CCCeeecc
Confidence 4578999999999999887776543 22555543
No 442
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.61 E-value=66 Score=38.19 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCC---CceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 292 ~gv~wL~~~~~~~---~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
..+..+.....++ ...++.-+.|+|||..+-+++..+..
T Consensus 24 ~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 24 HITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3344444444443 35779999999999988888776654
No 443
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=53.37 E-value=20 Score=40.48 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=31.6
Q ss_pred HHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEE
Q 000903 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1232)
Q Consensus 295 ~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV 339 (1232)
.+|......+++.+++-++|.|||.+.-+++..+-.. ...+++|
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~i 161 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTI 161 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEE
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEe
Confidence 4555555678889999999999999988887766444 2244444
No 444
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=53.10 E-value=82 Score=36.92 Aligned_cols=122 Identities=20% Similarity=0.212 Sum_probs=66.6
Q ss_pred CCcHHHHHHHHHHHHhhCC---------CC-----CeEEEeCCccHHHHHHH---HHHHcCCCcEEEEEcChhHHHHHHH
Q 000903 314 GLGKTIQSIAFLASLFGER---------IS-----PHLVVAPLSTLRNWERE---FATWAPQMNVVMYVGTSQARNIIRE 376 (1232)
Q Consensus 314 GLGKTiqaia~l~~l~~~~---------~~-----p~LIV~P~sll~qW~~E---~~~~~p~~~vv~~~g~~~~r~~i~~ 376 (1232)
|+|||=.++.++..|...+ .+ ..++|.|.+.-..--+| +.+.+| +.++.|....+....-
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~---~~V~V~~dR~~~~~~~ 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP---VPVIVGPDRVAAARAA 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC---CcEEEeCcHHHHHHHH
Confidence 8999999999999987653 11 27888888865555555 455555 4444444433221110
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccC----cccHHHHHHH
Q 000903 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLK 452 (1232)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn----~~S~~~~~l~ 452 (1232)
. ....++|+|.-=. +.. . .| .-+.++|++|-.+-+.| +...+..-+.
T Consensus 124 ~-------------------------~~~~~dviilDDG-fQh-~-~L-~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~ 174 (326)
T PF02606_consen 124 L-------------------------KEFPADVIILDDG-FQH-R-RL-KRDLDIVLVDADRPFGNGFLLPAGPLREPLS 174 (326)
T ss_pred H-------------------------HHCCCCEEEEcCC-ccc-c-cc-cCCcEEEEEeCCCCCcCCccCCCCcccCChh
Confidence 0 0112456554211 000 0 01 12567888887666655 2334444455
Q ss_pred hcccccEEEEecCCC
Q 000903 453 QYSTRHRVLLTGTPL 467 (1232)
Q Consensus 453 ~l~~~~rllLTGTPl 467 (1232)
.+.....+++|+.+.
T Consensus 175 ~l~rAD~vi~~~~~~ 189 (326)
T PF02606_consen 175 ALKRADAVIVTGCDA 189 (326)
T ss_pred HhCcccEEEEcCCCc
Confidence 555555677777764
No 445
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=52.74 E-value=83 Score=38.86 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhh-CCCCCeEEE
Q 000903 307 VILADEMGLGKTIQSIAFLASLFG-ERISPHLVV 339 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~-~~~~p~LIV 339 (1232)
..|.-..|.|||.++.-++..+.. .+...+.+|
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 457889999999988777776643 332344433
No 446
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=52.59 E-value=6.6 Score=36.44 Aligned_cols=31 Identities=19% Similarity=0.685 Sum_probs=26.4
Q ss_pred cccccccccCC-CCeeecC--CCCCccccCcCCC
Q 000903 50 KDDSCQACGES-ENLMSCD--TCTYAYHAKCLVP 80 (1232)
Q Consensus 50 ~~~~C~~C~~~-~~ll~Cd--~C~~~~H~~Cl~p 80 (1232)
....|..|+.. |-.+.|. +|.+.||+.|..-
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 45689999998 8899996 5999999999743
No 447
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=52.53 E-value=35 Score=44.52 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhC-CC--CCeEEEeCC-ccHHHHHHHHHHHc
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPL-STLRNWEREFATWA 356 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~-~~--~p~LIV~P~-sll~qW~~E~~~~~ 356 (1232)
.|-|-|.++|. ...+.+++-...|+|||.+.+.-+.+|... +. ..+|+|+-+ .....-+..+.+..
T Consensus 9 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVA------APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHh------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 48899999986 334667777789999999999999999863 43 358888884 33344455555544
No 448
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=52.47 E-value=52 Score=39.51 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=22.8
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 301 ~~~~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
...|..+.|..+.|.|||..+-.+...+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 3567788889999999998766655554433
No 449
>PRK06921 hypothetical protein; Provisional
Probab=52.32 E-value=38 Score=38.40 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=29.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeC
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P 341 (1232)
.+.+.+|.-++|+|||..+.+++..+.......++.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 466789999999999999999998887652234555443
No 450
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.30 E-value=21 Score=41.69 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=33.9
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
....|.+|....|+|||..|-++.... ..+|+=|-=.++...|--|-.+.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccchhhHHHHHHH
Confidence 467889999999999999887766532 22444444455556776555443
No 451
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=52.29 E-value=21 Score=42.61 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=22.1
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
-.|++++|....|.|||..+-.+...+...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 457777888899999998776666555443
No 452
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=52.13 E-value=59 Score=37.24 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.2
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhC-CCCCeEEEeC
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~-~~~p~LIV~P 341 (1232)
+...+|.-.+|.|||.++..++.++... +..++.+|.-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4456688899999999998888887654 3335555543
No 453
>PRK08939 primosomal protein DnaI; Reviewed
Probab=52.03 E-value=23 Score=41.08 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=32.2
Q ss_pred HHHHHHHhhc--CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEE
Q 000903 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1232)
Q Consensus 293 gv~wL~~~~~--~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV 339 (1232)
+..|+...-. .+.|.+|.-.+|+|||..+.|++..+...+. +++++
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~ 190 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLL 190 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 4556533221 3567889999999999999999999876543 44444
No 454
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=51.97 E-value=12 Score=42.04 Aligned_cols=37 Identities=30% Similarity=0.604 Sum_probs=30.5
Q ss_pred cccCCCCCCCCcCHHHHHHHHHHHHhhhhhhHHHhhcCc
Q 000903 1073 LRYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1232)
Q Consensus 1073 ~~~~~~~~~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~ 1111 (1232)
..||- ....|+..|+..|+.++-..|+|+|+.|-.=.
T Consensus 57 nsypI--~~e~WgadEEllli~~~~TlGlGNW~dIadyi 93 (432)
T COG5114 57 NSYPI--GEEGWGADEELLLIECLDTLGLGNWEDIADYI 93 (432)
T ss_pred cCccc--cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34543 35789999999999999999999999886544
No 455
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=51.65 E-value=85 Score=38.90 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCc------eEEEcCCCCcHHHHHHHHHHHH--hhCCC-CCeEEEeCC
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTH------VILADEMGLGKTIQSIAFLASL--FGERI-SPHLVVAPL 342 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~------~ILaDemGLGKTiqaia~l~~l--~~~~~-~p~LIV~P~ 342 (1232)
..|.|||...+.-|.-.+.++.+ +++...-|=|||..+.+++.+. +.... ..++|++|.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s 127 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPS 127 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEecc
Confidence 57999999998766434444333 4788889999998765555443 33333 378888885
No 456
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=51.53 E-value=84 Score=36.46 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
-++..+-|.|||..|..++..+...
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4789999999999999999888654
No 457
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.52 E-value=54 Score=39.11 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=41.4
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHHc
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~~ 356 (1232)
+.-.++.-+.|.||+..-+-++..+.... ++|.|+=..-+.||+-...+..
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~QiklRA~RL~ 143 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIKLRADRLG 143 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHHHHHHHhC
Confidence 33467899999999987777777776555 9999999999999988887764
No 458
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=51.40 E-value=1.1e+02 Score=34.86 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=24.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEe
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~ 340 (1232)
.++.-..|.|||.++.-++..+...+ .++++|.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 45678999999999988887776554 3555554
No 459
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=51.32 E-value=42 Score=37.28 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=39.2
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 301 ~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
+..+...+++-+.|.|||+.++.|+...... ..++|+|+-.....+-.+.+..+
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQF 71 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHHh
Confidence 3456667889999999999999988875543 24888888766666655555543
No 460
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=51.14 E-value=32 Score=39.77 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
+.+-+.|.+ +|......+.+.+++-.||+|||..+-+++..+..
T Consensus 115 g~~~~~~~~---~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 115 GIMTAAQRD---VLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCHHHHH---HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 444444443 44555567889999999999999988777776644
No 461
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.65 E-value=82 Score=36.66 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHHcCCCcEEEEE---cChhHHHHHHHhhhcCCC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV---GTSQARNIIREYEFYFPK 383 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~~p~~~vv~~~---g~~~~r~~i~~~e~~~~~ 383 (1232)
.++.---|.|||.+..=++.++...+. ++|+.+--.--.-=...++.|.-.+.+-++. |....--....
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~-~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDA------- 213 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGK-SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDA------- 213 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCC-eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHH-------
Q ss_pred CchhhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccCccc------HHHHHHHhc--c
Q 000903 384 NPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS------KLFSSLKQY--S 455 (1232)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn~~S------~~~~~l~~l--~ 455 (1232)
...-+.-.+|+||+|=|-|+-|... ++.+.+... .
T Consensus 214 -------------------------------------i~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ 256 (340)
T COG0552 214 -------------------------------------IQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPD 256 (340)
T ss_pred -------------------------------------HHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCC
Q ss_pred cccEEEEe--cCCCCCCHH
Q 000903 456 TRHRVLLT--GTPLQNNLD 472 (1232)
Q Consensus 456 ~~~rllLT--GTPlqN~~~ 472 (1232)
+.|.++|+ ||-=||.+.
T Consensus 257 ap~e~llvlDAttGqnal~ 275 (340)
T COG0552 257 APHEILLVLDATTGQNALS 275 (340)
T ss_pred CCceEEEEEEcccChhHHH
No 462
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=50.47 E-value=74 Score=42.61 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHH----hhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L----~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~L 681 (1232)
.|||..+....+-.....|.+++|.+..+..+.-..+.+ ...++++..++|.++..++.+++..+..+..+ ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 578876654443333456889999999987666554444 44577889999999999999999988764333 56
Q ss_pred eeccc-cccccccCCCCEEEEEcC
Q 000903 682 LSTRA-GGLGINLATADTVIIYDS 704 (1232)
Q Consensus 682 lsTra-gg~GINL~~ad~VIi~D~ 704 (1232)
++|.+ ....+.+.....||+=+-
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeecc
Confidence 66664 345577778888877554
No 463
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.33 E-value=64 Score=38.80 Aligned_cols=113 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHHcCCCcEEEEEcChhHHHHHHHhhhcCCCCch
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~~p~~~vv~~~g~~~~r~~i~~~e~~~~~~~~ 386 (1232)
.+++-=.|.|||.++.=++.+|.. ....+|+|+--.--+--...++..+-...|-+|.-....
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~---------------- 165 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEK---------------- 165 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCC----------------
Q ss_pred hhhccccCccccccccccccccEEEecHHHHhhcccccCCCceeEEEEcCcccccCcccHHHHHHHhcc---cccEEEE
Q 000903 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLL 462 (1232)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~VlItsye~l~~d~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~---~~~rllL 462 (1232)
..-+++..-...++.-.+|+||||=|-|+.- ...+...+..++ ..+-++|
T Consensus 166 -------------------------~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~Ik~~~~P~E~ll 218 (451)
T COG0541 166 -------------------------DPVEIAKAALEKAKEEGYDVVIVDTAGRLHI-DEELMDELKEIKEVINPDETLL 218 (451)
T ss_pred -------------------------CHHHHHHHHHHHHHHcCCCEEEEeCCCcccc-cHHHHHHHHHHHhhcCCCeEEE
No 464
>PRK12377 putative replication protein; Provisional
Probab=49.97 E-value=42 Score=37.67 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=31.3
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHH
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW 348 (1232)
..+.+|.-.+|+|||..+.+++..+...+. +++++.-..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEEHHHHHHHH
Confidence 356789999999999999999998876542 44444334444433
No 465
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.48 E-value=46 Score=39.23 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=36.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHHcCCCcEEEEE
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~~p~~~vv~~~ 365 (1232)
.+++-=-|.|||.++.-++.++...+.++.||.+.. --.---+.++.|+....+-+|.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT-FRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT-FRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc-cccchHHHHHHHhHhhCCeeEe
Confidence 346777899999988888888877776676666553 2222234455555444444443
No 466
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=49.21 E-value=24 Score=39.00 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=35.6
Q ss_pred HHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCcc
Q 000903 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1232)
Q Consensus 297 L~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sl 344 (1232)
+...+..|.-.+|+...|.|||..++.++.........++|++.....
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 333456666789999999999999998888776653348888876443
No 467
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=49.01 E-value=16 Score=38.66 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=19.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCC
Q 000903 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1232)
Q Consensus 308 ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~ 342 (1232)
||..+-|-|||...-.++..+...+..+++|.+|.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~ 35 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPS 35 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCC
Confidence 34557899999765555555555544689999995
No 468
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=48.73 E-value=48 Score=36.27 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=39.7
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
.+.-.+|+.+.|.|||..++.++...... ..++++|.......+-.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHc
Confidence 45556889999999999999888775554 35889998877777766666554
No 469
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=48.64 E-value=49 Score=36.60 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=37.4
Q ss_pred cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHH
Q 000903 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1232)
Q Consensus 302 ~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~ 354 (1232)
..+.-.+|..+.|+|||..++.++..+...+ .+++.|+......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHH
Confidence 4566788999999999999988888776543 467777776555554444443
No 470
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=48.60 E-value=29 Score=35.95 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=37.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHH
Q 000903 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL 644 (1232)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L 644 (1232)
..++++.++.+|+.+...+|.||+|.+....+++.|.+.|
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999
No 471
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=48.30 E-value=9.4 Score=31.06 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=17.8
Q ss_pred hhhhhc-cCCCcceeEEeeeccc
Q 000903 196 RILACR-GEDDEKEYLVKYKELS 217 (1232)
Q Consensus 196 rIi~~r-~~~~~~eyLVKWkgL~ 217 (1232)
+|++.| ..++..+|||-|.|.+
T Consensus 27 ~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 27 RVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred EEEEEEEcCCCcEEEEEEecCcC
Confidence 677877 5578899999998864
No 472
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=48.08 E-value=1.3e+02 Score=37.35 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=28.5
Q ss_pred cccccCCCceeEEEEcCcccccCcccHHHHHHHhcc---cccEEEEecCC
Q 000903 420 DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLLTGTP 466 (1232)
Q Consensus 420 d~~~l~~i~w~~vIvDEaHrlKn~~S~~~~~l~~l~---~~~rllLTGTP 466 (1232)
+...+......++|+||+|..++. .++.++..-. .+..++...|+
T Consensus 115 ~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 115 DADSLDGLNPSLAIFDELHAHKDD--ELYDALESGMGARPNPLIIIISTA 162 (477)
T ss_pred CCCCccCCCCceEEEeCCCCCCCH--HHHHHHHhhhccCCCceEEEEeCC
Confidence 345566677889999999999864 3455554432 33445555554
No 473
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=47.60 E-value=7.5 Score=41.39 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=33.5
Q ss_pred ccccccccCCCCeeecCCCCCccccCcCCCCCCC------------CCCCCCCCCccCCCCc
Q 000903 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA------------PPSGSWRCPECVSPLN 100 (1232)
Q Consensus 51 ~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~------------~p~~~W~C~~C~~~~~ 100 (1232)
+..|.+|.+.-.--....|...|+..|+...+.. .......||.|..+..
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 4679999876443333579999999999654321 0124568999997653
No 474
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=47.32 E-value=48 Score=37.27 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=41.1
Q ss_pred hcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 301 ~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
+..+...++.-.+|+|||+-++-|+......+ .|+|.|+-...-..-.+.+..+
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~g-e~vlyvs~~e~~~~l~~~~~~~ 73 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREG-EPVLYVSTEESPEELLENARSF 73 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcC-CcEEEEEecCCHHHHHHHHHHc
Confidence 35677788999999999999999999887773 4899998766555555555443
No 475
>PRK08760 replicative DNA helicase; Provisional
Probab=47.09 E-value=54 Score=40.51 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHHH
Q 000903 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1232)
Q Consensus 293 gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~~ 355 (1232)
.++-+...+..+.=.|||.-+|.|||.-++.++.........|++++..--...++...+...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh
Confidence 344444556677778999999999999999988776533334899998887778887766544
No 476
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.04 E-value=83 Score=40.93 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=23.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHHHh-hCCCCCeEEEeC
Q 000903 306 HVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAP 341 (1232)
Q Consensus 306 ~~ILaDemGLGKTiqaia~l~~l~-~~~~~p~LIV~P 341 (1232)
-..|....|.|||.++.-++..+. ..+...+.+|+-
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~ 223 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT 223 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC
Confidence 346889999999988766666553 333334544443
No 477
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=46.77 E-value=26 Score=38.34 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=26.1
Q ss_pred ceeEEEEcCcccccCcccHHHHHHHhcccccEEEEecCCCCCCH
Q 000903 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1232)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~ 471 (1232)
..+.+||||++.+-... +.- +........+.|-|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~g~--l~~-l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGY--LLL-LLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCChHH--HHH-HHhhccCcceEEEECchhccC
Confidence 46899999999764322 111 333334446778899987653
No 478
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.65 E-value=1.6e+02 Score=35.86 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=30.5
Q ss_pred ceeEEEEcCcccccCcccHHHHHHHhcc-----cccEEEEecCCCCCCHHHHHHHHhhhc
Q 000903 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLD 482 (1232)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S~~~~~l~~l~-----~~~rllLTGTPlqN~~~EL~~Ll~fL~ 482 (1232)
..+.++||.+=+..+. ..+...+..+. ....|.|++|--.+.+.++...+..+.
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~ 327 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHG 327 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 3578899987444332 22334444442 234577999976666666665544433
No 479
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=46.44 E-value=36 Score=34.78 Aligned_cols=83 Identities=22% Similarity=0.146 Sum_probs=56.1
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHh-hC---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEE
Q 000903 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-FK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1232)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~-~~---g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~ 680 (1232)
..+.++.++.+|+.+....|+||+|++.....++.|.+.|= .. -++..+ .|.-. ....- +
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~--------------~~~~P-V 73 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGL-AGEGP--------------AAGQP-V 73 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCc-CCCCC--------------CCCCC-E
Confidence 35668899999999999999999999999999999999992 22 233332 22211 11112 4
Q ss_pred EeeccccccccccCCCCEEEEEcCCC
Q 000903 681 LLSTRAGGLGINLATADTVIIYDSDW 706 (1232)
Q Consensus 681 LlsTragg~GINL~~ad~VIi~D~dW 706 (1232)
+|+. +..-+...++.+|+++..+
T Consensus 74 ~l~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 74 LLTW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred EEEc---CCCCCCCCCcEEEECCCCC
Confidence 5542 1223667788899998764
No 480
>PHA00673 acetyltransferase domain containing protein
Probab=46.44 E-value=29 Score=35.97 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=36.7
Q ss_pred eeEEEEcCcccccCcccHHHHHHHhc---ccccEEEEecCCCCCCHH
Q 000903 429 WQCMIVDEGHRLKNKDSKLFSSLKQY---STRHRVLLTGTPLQNNLD 472 (1232)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l---~~~~rllLTGTPlqN~~~ 472 (1232)
.+.|.|++.||=++-.+.+....... ...++|.+||||-.|.+.
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 46899999999999999888877665 356899999999888754
No 481
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=46.38 E-value=12 Score=30.95 Aligned_cols=34 Identities=26% Similarity=0.682 Sum_probs=20.3
Q ss_pred ecCCCCCccccCcCCCC--------CCCCCCCCCCCCccCCCC
Q 000903 65 SCDTCTYAYHAKCLVPP--------LKAPPSGSWRCPECVSPL 99 (1232)
Q Consensus 65 ~Cd~C~~~~H~~Cl~p~--------l~~~p~~~W~C~~C~~~~ 99 (1232)
.|..|...|+..==+|. .... ..+|.||.|..+.
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~L-p~~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDL-PDDWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHC-CCCCCCCCCCCcH
Confidence 57778877775422221 1122 3489999998654
No 482
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=46.22 E-value=38 Score=38.43 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhh
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~ 330 (1232)
.+.+.|.+.+.++.. ..++.++++-++|.|||...-+++..+..
T Consensus 63 g~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 63 GLKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 367788888766532 23445789999999999998888877643
No 483
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=46.22 E-value=28 Score=36.88 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=40.0
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhC---------CCCCeEEEeCCccHHHHHHHHHHHc
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTLRNWEREFATWA 356 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~---------~~~p~LIV~P~sll~qW~~E~~~~~ 356 (1232)
.+.-++++...|.|||..++.++..+... ...++|+|.......++.+-+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 45668999999999999999988887652 2348899988877777777777665
No 484
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.15 E-value=2.2e+02 Score=33.95 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=51.8
Q ss_pred HhhhhHHHHHHHHHHHHHHcCceEEEEecch---hHHHHHHHHHhhCCCcEE-EEeCCCCHHHHHHHHHHHhcCCCC
Q 000903 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---HMLDLLEDYLTFKKWQYE-RIDGKVGGAERQIRIDRFNAKNSS 676 (1232)
Q Consensus 604 i~~S~Kl~~L~klL~~l~~~g~KvLIFsq~~---~~ldiL~~~L~~~g~~~~-ridG~~~~~eRq~~i~~Fn~~~s~ 676 (1232)
++.+||...+.++...++.+|.|+.+.|-.+ ...|-|...-...+++|. .++..-+..--.+-+++|..++-+
T Consensus 109 LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fd 185 (483)
T KOG0780|consen 109 LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFD 185 (483)
T ss_pred ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCc
Confidence 4578888888888888888898888887654 356777776666677754 344445556667788888765544
No 485
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=46.14 E-value=1.1e+02 Score=43.08 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=40.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHh---hCCCCCeEEEeCCccH
Q 000903 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF---GERISPHLVVAPLSTL 345 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~---~~~~~p~LIV~P~sll 345 (1232)
.|.+-|.+++..+.. ...+-++|.--.|+|||.+.-+++..+. ......++.++|..--
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 689999999876532 2345688999999999988655544432 2222357778886544
No 486
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=45.91 E-value=1.3e+02 Score=34.57 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=33.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--ceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 285 SLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~~~~~--~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
.|...|-..+..|...+.+++ +++|... |.||+..|..|+..+....
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 355677777777777766654 3555444 6899999999999887643
No 487
>PHA02929 N1R/p28-like protein; Provisional
Probab=45.77 E-value=7.5 Score=43.04 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=33.9
Q ss_pred cccccccccCCCC--------eeecCCCCCccccCcCCCCCCCCCCCCCCCCccCCCCccc
Q 000903 50 KDDSCQACGESEN--------LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDI 102 (1232)
Q Consensus 50 ~~~~C~~C~~~~~--------ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~i 102 (1232)
.+..|.+|...-. ...-..|...||..|+.+.+...+ .||.|..+...+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~----tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN----TCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC----CCCCCCCEeeEE
Confidence 3578999987411 122347899999999987765432 799999765443
No 488
>PF12846 AAA_10: AAA-like domain
Probab=45.64 E-value=39 Score=38.28 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHH
Q 000903 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1232)
Q Consensus 304 ~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW 348 (1232)
+.++++.-.+|.|||..+..++..+...+ .+++|+=|..-...|
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-PRVVIFDPKGDYSPL 44 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-CCEEEEcCCchHHHH
Confidence 35788899999999998887777766655 356666555444443
No 489
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=45.36 E-value=66 Score=35.29 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=37.2
Q ss_pred hhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHHHH
Q 000903 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1232)
Q Consensus 300 ~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~~~ 354 (1232)
.+..+...+|+-+.|+|||..+..++...... ..++++|.-.....+..+....
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHHH
Confidence 34566678899999999999998888765443 2377777765555554444333
No 490
>PRK13766 Hef nuclease; Provisional
Probab=45.33 E-value=3.6e+02 Score=35.52 Aligned_cols=93 Identities=15% Similarity=0.267 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHHH-HHHcCceEEEEecchhHHHH----HHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEE
Q 000903 606 SSGKLQLLDKMMVK-LKEQGHRVLIYSQFQHMLDL----LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~-l~~~g~KvLIFsq~~~~ldi----L~~~L~~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~ 680 (1232)
.+||.....-++.. +...+.++||.+.......- +..++...+.++..++|.++..+|..+... .. ++
T Consensus 39 G~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~--ii 111 (773)
T PRK13766 39 GLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AK--VI 111 (773)
T ss_pred CccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CC--EE
Confidence 47887643333332 34567899999998766544 444443334478889999998888665432 12 34
Q ss_pred Eeecccc-----ccccccCCCCEEEEEcCC
Q 000903 681 LLSTRAG-----GLGINLATADTVIIYDSD 705 (1232)
Q Consensus 681 LlsTrag-----g~GINL~~ad~VIi~D~d 705 (1232)
+++.... ..-+++...+.||+-+-.
T Consensus 112 v~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 112 VATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 4443322 223556677777776654
No 491
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=44.91 E-value=2.7e+02 Score=33.18 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=34.0
Q ss_pred CCcHHHHHHHHHHHH-hhcC--CCceEEEcCCCCcHHHHHHHHHHHHhhCC
Q 000903 285 SLHPYQLEGLNFLRF-SWSK--QTHVILADEMGLGKTIQSIAFLASLFGER 332 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~-~~~~--~~~~ILaDemGLGKTiqaia~l~~l~~~~ 332 (1232)
.-|+-|++.+..... .... ..++++.-.+|+|||.++--++..+....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 367888887754322 2222 34589999999999999888888776653
No 492
>PRK10263 DNA translocase FtsK; Provisional
Probab=44.86 E-value=70 Score=43.65 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=29.5
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhC-CCC--CeEEEeCCc
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPLS 343 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~-~~~--p~LIV~P~s 343 (1232)
+..+.++|-.+|.|||...-++|..+... ... .+++|=|+.
T Consensus 1009 k~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1009 KMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 34678999999999999988888776543 222 556666663
No 493
>PRK05748 replicative DNA helicase; Provisional
Probab=44.78 E-value=50 Score=40.48 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHHHHHH
Q 000903 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1232)
Q Consensus 292 ~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW~~E~ 352 (1232)
.+++-+...+..+.-.|||.-+|.|||.-++.++.........|++++...-.-.+....+
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 3455554556777778999999999999999998876533334888888766666655544
No 494
>PRK10689 transcription-repair coupling factor; Provisional
Probab=44.49 E-value=1.1e+02 Score=42.21 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhHHHHHHHHHh----hCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCceEEE
Q 000903 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1232)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KvLIFsq~~~~ldiL~~~L~----~~g~~~~ridG~~~~~eRq~~i~~Fn~~~s~~~v~L 681 (1232)
.+||..+....+-.....|.+|+|.+..+....-+.+.+. ..++.+..+.|..+..++.+++.....+..+ ++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d---IV 707 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID---IL 707 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC---EE
Confidence 5778765444333344578999999998876655544443 3456788899999999999998888654433 56
Q ss_pred eeccc-cccccccCCCCEEEEEcC
Q 000903 682 LSTRA-GGLGINLATADTVIIYDS 704 (1232)
Q Consensus 682 lsTra-gg~GINL~~ad~VIi~D~ 704 (1232)
++|.. ....+++.....||+=+-
T Consensus 708 VgTp~lL~~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIVDEE 731 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEEech
Confidence 66654 444567778888877554
No 495
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=44.47 E-value=1.1e+02 Score=43.81 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=41.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEcCCCCcHHHHHHHHHHHHhh--CC-CCCeEEEeCCccH
Q 000903 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG--ER-ISPHLVVAPLSTL 345 (1232)
Q Consensus 284 ~~L~pyQ~~gv~wL~~~~~~~~~~ILaDemGLGKTiqaia~l~~l~~--~~-~~p~LIV~P~sll 345 (1232)
..|-+-|.+++..+.. ....-.+|.--.|+|||.+.-+++..+.. .. ...++.++|..--
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 4689999999987632 23456789999999999886665555432 22 2357778997544
No 496
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=44.15 E-value=7.8e+02 Score=32.96 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhhC
Q 000903 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1232)
Q Consensus 307 ~ILaDemGLGKTiqaia~l~~l~~~ 331 (1232)
.+++.++|.|||..|-++...|+..
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCC
Confidence 5889999999999998888877643
No 497
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=43.89 E-value=43 Score=43.86 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=30.2
Q ss_pred CCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccHHHH
Q 000903 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1232)
Q Consensus 303 ~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll~qW 348 (1232)
...+.+|.-..|+|||..|-++...+ ..+++.|-+..++..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~----~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES----GANFIAVRGPEILSKW 527 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----CCCEEEEehHHHhhcc
Confidence 45678899999999999887776653 2377777766555544
No 498
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=43.56 E-value=6.4 Score=30.53 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=29.2
Q ss_pred cccccCCC-CeeecCCCCCccccCcCCCCCCCCCCCCCCCCccCC
Q 000903 54 CQACGESE-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1232)
Q Consensus 54 C~~C~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1232)
|.+|...- ..+....|...||..|+...+.. +...||.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 77887654 44555669999999999655443 4567999975
No 499
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=42.90 E-value=48 Score=39.47 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHHHHHhh--cCCCceEEEcCCCCcHHHHHHHHHHHHhhCCCCCeEEEeCCccH
Q 000903 285 SLHPYQLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1232)
Q Consensus 285 ~L~pyQ~~gv~wL~~~~--~~~~~~ILaDemGLGKTiqaia~l~~l~~~~~~p~LIV~P~sll 345 (1232)
+|-+-|...++.++..+ ..+.+..|.-.-|+|||...=++...+... ..++++++|..+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~-~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR-GKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc-cceEEEecchHHH
Confidence 36678999988875555 456667899999999999877777666443 3488999997544
No 500
>PRK09087 hypothetical protein; Validated
Probab=42.73 E-value=1.1e+02 Score=33.68 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=26.4
Q ss_pred eEEEEcCcccccCcccHHHHHHHhcc-cccEEEEecC
Q 000903 430 QCMIVDEGHRLKNKDSKLFSSLKQYS-TRHRVLLTGT 465 (1232)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~~l~-~~~rllLTGT 465 (1232)
++|+||+.|.+......++..+..+. ....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 37999999988655566777666654 3567888887
Done!