BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000904
(1232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 147/510 (28%), Positives = 247/510 (48%), Gaps = 57/510 (11%)
Query: 740 LFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI-FAVGATT------- 791
L +L L R P+ F+D TP G ++SRV +D+ ++ + S+I F G T
Sbjct: 112 LRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIM 171
Query: 792 ----NAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHL 847
N +L L++V VL I ++ + ++Y++ + L +LNG +
Sbjct: 172 MFRVNVILSLVTLSIVPLTVLITQI----VSSQTRKYFYENQRVLGQLNGI--------I 219
Query: 848 AESIAGAMTIRAFEEEDRFFAK------NLDLIDTNASPFFQTFAANEWLIQRLETLSAT 901
E I+G I+ F E++ K +L + T A F L+ + L
Sbjct: 220 EEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPP---LMNMVNNLGFA 276
Query: 902 VISSAAFCMVL---LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII-SVERL 957
+IS + L + GT FIG + + LN + NQ + + S ER+
Sbjct: 277 LISGFGGWLALKDIITVGTIAT-FIGYSRQFTRPLNE-----LSNQFNMIQMALASAERI 330
Query: 958 NQYMHVPSEA--PEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHK 1015
+ + + E P+ VE V G+++ ++ Y P VLK I+ + G K
Sbjct: 331 FEILDLEEEKDDPDAVELRE------VRGEIEFKNVWFSYDKKKP-VLKDITFHIKPGQK 383
Query: 1016 IGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNG 1075
+ +VG TGSGKTT++ L R + G+ILVDGIDI K+ LRS GI+ QD LF+
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443
Query: 1076 TVRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132
TV+ NL +P + TD+EI E H ++ G ++++ ++G + S GQRQL
Sbjct: 444 TVKENLKYGNPGA--TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501
Query: 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLA 1192
+ RA L +IL+LDEAT+++D T+ +Q + T I +AHR+ T+ + +++
Sbjct: 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIV 561
Query: 1193 ISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222
+ DG++ E + +L+++ G + +Y
Sbjct: 562 LRDGEIVEMGKHDELIQKRGFYYELFTSQY 591
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 116/277 (41%), Gaps = 38/277 (13%)
Query: 430 QIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERL 489
Q ++ V L A+I++F + ++ L ++ +TVL ++ QT+ +++R+
Sbjct: 157 QFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSS-----QTRKYFYENQRV 211
Query: 490 KA-----CSEALVNMKVLKLYAWETH----FKNAIEILRNVEYKW--LSAV--QLRKAYN 536
E + + V+KL+ E F E LR V K S V L N
Sbjct: 212 LGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVN 271
Query: 537 TFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANV 596
F L+S FG L + + TF+ R P+ + + + A
Sbjct: 272 NLGF----ALISG--FGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALA 325
Query: 597 AFSRIVNFLEAPELQ----SMNIRQ-KGNIENVNHVIXXXXXXXXXXXXXXXPTMRNISL 651
+ RI L+ E + ++ +R+ +G IE N P +++I+
Sbjct: 326 SAERIFEILDLEEEKDDPDAVELREVRGEIEFKN---------VWFSYDKKKPVLKDITF 376
Query: 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
++PGQKVA+ G GSGK+T++ ++ +G IL
Sbjct: 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL 413
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 141/236 (59%), Gaps = 1/236 (0%)
Query: 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039
WP G++ + DL +Y +L+ IS + G ++G++GRTGSGK+TL+ A RL+
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 72
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKC 1099
G+I +DG+ + L R FG+IPQ +F+GT R NLDP + H+DQEIW+V +
Sbjct: 73 TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
L + + LD ++V+ G S G +QL CL R++L +++IL+LDE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1160 ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLF 1215
I+++T++ FADCTVI RI +++C L I + K+ +YD ++L F
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN--SWLAANVEN 699
+ NIS + PGQ+V + G GSGKSTLL+A L + +T+G I + SW + +E
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQ 91
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 138/530 (26%), Positives = 248/530 (46%), Gaps = 38/530 (7%)
Query: 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRV 764
L L+ V L GF S+ + +S +VV+ +R +L N P+ F+D G +
Sbjct: 72 LGLMFVRGLSGFASS-YCLSWVSGNVVMQMRR------RLFNHFMHMPVRFFDQESTGGL 124
Query: 765 LSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ------VLFVSIPVIFLA 818
LSR++ D V +L+ V S +G+L ++ W VL V PV+ A
Sbjct: 125 LSRITYDSEQVAGATSRALVSIV---REGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFA 181
Query: 819 IRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF---EEEDRFFAKNLDLID 875
I F +++ R T V + + + G + ++ E E + F K + +
Sbjct: 182 ISFVSKRF---RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMR 238
Query: 876 TNASPFFQTFAANEWLIQRLETLS---ATVISSAAFCMVLLPPGTFTPGFIGMALSYGLS 932
+ + +IQ + +L+ ++S L PGTFT F M +GL
Sbjct: 239 QQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAM---FGLM 295
Query: 933 LNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 992
+ S+ ++ + + + L M + +E DN V G+VD+ D+
Sbjct: 296 RPLKALTSVTSE--FQRGMAACQTLFGLMDLETE-----RDNGKYEAERVNGEVDVKDVT 348
Query: 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
Y+ L +S + G + +VGR+GSGK+T+ R + G I +DG D+
Sbjct: 349 FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408
Query: 1053 KLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQ--HTDQEIWEVLAKCHLGEAVREKEN 1110
L +LR F ++ Q+ LFN T+ N+ ++ +T ++I + + H E +
Sbjct: 409 DYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ 468
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
GLD+++ E+G++ S GQRQ + RALLR + +L+LDEAT+++D ++ +Q +
Sbjct: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528
Query: 1171 DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220
+ TV+ +AHR+ T+ +L + +G++ E L+ ++G+ + QL R
Sbjct: 529 NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGA-YAQLHR 577
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTL 672
P + ++S + G+ VA+ G GSGKST+
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTI 385
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 145/533 (27%), Positives = 255/533 (47%), Gaps = 45/533 (8%)
Query: 720 LFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDV 779
++LM S +V +R+S L +S+ R ++F+D T G +++R+SSD +++ V
Sbjct: 83 VYLMQTSGQRIVNRLRTS------LFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSV 136
Query: 780 PFSLIFAVGATTNAYSNLGVLAVVTWQ----VLFVSIPVIFLAIRLQRYYFATAKELMRL 835
+L + A A + ++ V+ VL V PV +A+ RY ++L ++
Sbjct: 137 TENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKV 192
Query: 836 NGTTKSLV-ANHLAES-IAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFA-ANEWLI 892
T SL A LAE I T+RAF K + I+ AS A +
Sbjct: 193 --TQDSLAQATQLAEERIGNVRTVRAF-------GKEMTEIEKYASKVDHVMQLARKEAF 243
Query: 893 QRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII 952
R AT +S + +L G G M + L+S L+ + ++
Sbjct: 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVG---ELSSFLMYAFWVGISIGGLSS 300
Query: 953 SVERLNQYMHVPSEAPEVVE-DNRPPPNWPVV-------GKVDICDLQIRY--RPDSPLV 1002
L + + E++E + + P N V+ G ++ ++ Y RP+ P +
Sbjct: 301 FYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP-I 359
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
+ S + G +VG +GSGK+T++ L RL +PA G I +DG DI +L LRS+
Sbjct: 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 419
Query: 1063 FGIIPQDPTLFNGTVRYNL----DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118
G + Q+P LF+ ++ N+ D S T +EI V + +R G +++V E
Sbjct: 420 IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVA 1178
G S GQ+Q + RALL+ +IL+LDEAT+++D + ++Q+ + TV+ +A
Sbjct: 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIA 539
Query: 1179 HRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSHLHSAES 1231
HR+ T+ + MV + GK+ EY + +L+ + ++ +L+ + S + +AE+
Sbjct: 540 HRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNK-QSFISAAEN 591
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P ++ SL + G A+ G GSGKST+L+ +L GTI
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 141/523 (26%), Positives = 248/523 (47%), Gaps = 44/523 (8%)
Query: 720 LFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDV 779
++LM S +V +R+S L +S+ R ++F+D T G +++R+SSD +++ V
Sbjct: 114 VYLMQTSGQRIVNRLRTS------LFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSV 167
Query: 780 PFSLIFAVGATTNAYSNLGVLAVVTWQ----VLFVSIPVIFLAIRLQRYYFATAKELMRL 835
+L + A A + ++ V+ VL V PV +A+ RY ++L ++
Sbjct: 168 TENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKV 223
Query: 836 NGTTKSLV-ANHLAES-IAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFA-ANEWLI 892
T SL A LAE I T+RAF K + I+ AS A +
Sbjct: 224 --TQDSLAQATQLAEERIGNVRTVRAF-------GKEMTEIEKYASKVDHVMQLARKEAF 274
Query: 893 QRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII 952
R AT +S + +L G G M + L+S L+ + ++
Sbjct: 275 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVG---ELSSFLMYAFWVGISIGGLSS 331
Query: 953 SVERLNQYMHVPSEAPEVVE-DNRPPPNWPVV-------GKVDICDLQIRY--RPDSPLV 1002
L + + E++E + + P N V+ G ++ ++ Y RP+ P +
Sbjct: 332 FYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP-I 390
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
+ S + G +VG +GSGK+T++ L RL +PA G I +DG DI +L LRS+
Sbjct: 391 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 450
Query: 1063 FGIIPQDPTLFNGTVRYNL----DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118
G + Q+P LF+ ++ N+ D S T +EI V + +R G +++V E
Sbjct: 451 IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE 510
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVA 1178
G S GQ+Q + RALL+ +IL+LDEAT+++D + ++Q+ + TV+ +A
Sbjct: 511 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIA 570
Query: 1179 HRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221
H + T+ + MV + GK+ EY + +L+ + ++ +L+ +
Sbjct: 571 HHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNK 613
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P ++ SL + G A+ G GSGKST+L+ +L GTI
Sbjct: 389 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 252/521 (48%), Gaps = 55/521 (10%)
Query: 727 LSSVVLGIRSSKSLFSQLLNSLFRAPMS----FYDS--TPLGRVLSRVSSDLSIVDLDVP 780
L + +GI +S+SL L N LFR +S F+DS G++ +R+++D+ + +
Sbjct: 813 LMTFFMGI-ASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAID 871
Query: 781 FSLIFAVGATTNAYSNLGVLAVVTWQV--LFVSI-PVIFLA--IRLQRYYFATAKELMRL 835
F + + + +G+ WQ+ L ++I P++ +R +R+ K
Sbjct: 872 FRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEF 931
Query: 836 NGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRL 895
+ K + E+I T++A ED F+ + +D P + A E IQ L
Sbjct: 932 ADSGKIAI-----EAIENVRTVQALAREDTFYENFCEKLDI---PHKE--AIKEAFIQGL 981
Query: 896 ETLSAT----VISSAAFCM----VLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQN---- 943
A+ ++++ A+ M ++ P T P + + + Y +++++S + +
Sbjct: 982 SYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRV-LRVMYAITISTSTLGFATSYFPE 1040
Query: 944 --QCTLANYII-SVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSP 1000
+ T A II + R + S A E + GKV +++ Y P+ P
Sbjct: 1041 YAKATFAGGIIFGMLRKISKIDSLSLAGE---------KKKLYGKVIFKNVRFAY-PERP 1090
Query: 1001 LV--LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD 1058
+ LKG+S + E G + +VG +G GK+T++ L R + GG+I +DG +I L
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEH 1150
Query: 1059 LRSRFGIIPQDPTLFNGTVR----YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDS 1114
RS+ I+ Q+PTLF+ ++ Y LDP S T ++ E ++ + E G ++
Sbjct: 1151 TRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFET 1209
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTV 1174
V + G+ S GQ+Q + RAL+R +IL+LDEAT+++D ++ ++Q+ + T
Sbjct: 1210 RVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTC 1269
Query: 1175 ITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLF 1215
I +AHR+ TVM+ + +S+G + E +LM +G+ +
Sbjct: 1270 IVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYY 1310
Score = 142 bits (359), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 136/239 (56%), Gaps = 8/239 (3%)
Query: 979 NWPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL 1036
+ + G + + ++ Y RPD P +L+G++ G + +VG +G GK+T+I L R
Sbjct: 409 DMKIKGDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467
Query: 1037 VEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVL 1096
+ GKI +DG+D+ + L LR ++ Q+P LFN T+ N+ + +E E++
Sbjct: 468 YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE--EMV 525
Query: 1097 AKCHLGEA---VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
A C + A ++ NG ++LV + G+ S GQ+Q + RAL+R +IL+LDEAT+++
Sbjct: 526 AACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585
Query: 1154 DNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
D ++ I+Q+ + T I +AHR+ T+ + ++++ +G++ E + LM ++G
Sbjct: 586 DAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQG 644
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
P +R ++L V GQ VA+ G G GKST+++ +L
Sbjct: 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL 465
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLA 674
++ +S V PGQ +A+ G G GKST++A
Sbjct: 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVA 1123
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 132/518 (25%), Positives = 235/518 (45%), Gaps = 51/518 (9%)
Query: 736 SSKSLFS---QLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792
S+K L+ +L N L FY + +G+V+SRV +D V + F + N
Sbjct: 89 SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVIND-------VEQTKDFILTGLMN 141
Query: 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYY-------FATAKELMRLNGTTKSLVAN 845
+ + + + + F+ + + A+ + +Y F ++L R + V
Sbjct: 142 IWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQG 201
Query: 846 HLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAA-----NEWLIQRLETLSA 900
L E + G +++F ED AKN D +TN F T A N + + T++
Sbjct: 202 FLHERVQGISVVKSFAIEDNE-AKNFDKKNTN----FLTRALKHTRWNAYSFAAINTVTD 256
Query: 901 T----VISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVER 956
VI A+ + G+ T G + + Y L L + + TL S++R
Sbjct: 257 IGPIIVIGVGAYLAI---SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 957 LNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKI 1016
+ Q + E ++ P G++DI + +Y + +LK I+ + E G +
Sbjct: 314 VFQLI---DEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETV 370
Query: 1017 GIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGT 1076
VG +G GK+TLI + R + G+IL+DG +I LR++ G++ QD LF+ T
Sbjct: 371 AFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 430
Query: 1077 VRYNL---DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133
V+ N+ P + TD+E+ E + + + G D+ V E G S GQ+Q +
Sbjct: 431 VKENILLGRPTA--TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488
Query: 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAI 1193
R L IL+LDEAT+++D ++ I+Q+ + D T + VAHR+ T+ ++ I
Sbjct: 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVI 548
Query: 1194 SDGKLAEYDEPMKLMKREGSLFGQLVREYWSHLHSAES 1231
+G + E +L+ ++G+ + HL+S ++
Sbjct: 549 ENGHIVETGTHRELIAKQGA---------YEHLYSIQN 577
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 119/303 (39%), Gaps = 43/303 (14%)
Query: 408 GEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVV----IMI 462
G++++ V D + +F IW + + IAL I+F T+AAL + I+
Sbjct: 118 GQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILT 177
Query: 463 TVLCNAPLAKLQHKFQTKLMVAQ---DERLKACSEALVNMKVLKLYAWETHFKNAIEILR 519
+ L KL + L Q ER++ S V+K +A E N +
Sbjct: 178 VYVFFGRLRKLTRERSQALAEVQGFLHERVQGIS-------VVKSFAIE---DNEAKNFD 227
Query: 520 NVEYKWLSAVQLRKAYNTFLFWS-------SPVLVSTATFGACYFLNVPLYASNVFTFVA 572
+L+ +N + F + P++V GA ++ + + FV
Sbjct: 228 KKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIV--IGVGAYLAISGSITVGTLAAFVG 285
Query: 573 TLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPE-------LQSMNIRQKGNIENVN 625
L L+ P+R + Q+ + R+ ++ Q + I+Q G I+ ++
Sbjct: 286 YLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQ-GRID-ID 343
Query: 626 HVIXXXXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
HV P +++I+L + G+ VA G G GKSTL+ I T G
Sbjct: 344 HV-------SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396
Query: 686 TIL 688
IL
Sbjct: 397 QIL 399
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 146 bits (368), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 123/492 (25%), Positives = 235/492 (47%), Gaps = 33/492 (6%)
Query: 736 SSKSLFSQLLNSLFRAPMSFYDST----PLGRVLSRVSSDLS--------IVDLDVPFSL 783
+S++ + L LFR +SF S +++R+++D++ ++ + V L
Sbjct: 90 ASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPL 149
Query: 784 IFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLV 843
+F G N+ + +V+ +F+ P++ L + L + L R + V
Sbjct: 150 LFVGGIVMAVSINVKLSSVL----IFLIPPIVLLFVWLTK----KGNPLFRKIQESTDEV 201
Query: 844 ANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLE----TLS 899
+ E++ G +RAF E+ +N + N S +A ++ L ++
Sbjct: 202 NRVVRENLLGVRVVRAFRREE---YENENFRKANESLRRSIISAFSLIVFALPLFIFIVN 258
Query: 900 ATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVE-RLN 958
+I+ F VL+ G I +Y + + SL+M I N + N+I+
Sbjct: 259 MGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-IGN---ILNFIVRASASAK 314
Query: 959 QYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGI 1018
+ + V +E P + E + V G V +++ RY ++ VL G++ + + G + +
Sbjct: 315 RVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAV 374
Query: 1019 VGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVR 1078
+G TGSGK+TL+ + RL++P G++ VD +D+ + L DLR +PQ+ LF+GT++
Sbjct: 375 LGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIK 434
Query: 1079 YNLD-PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137
NL TD EI E + + + G DS V G N+S GQ+Q + RAL
Sbjct: 435 ENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL 494
Query: 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGK 1197
+++ ++L+LD+ T+S+D T+ + ++ CT + +IPT + +L + +GK
Sbjct: 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGK 554
Query: 1198 LAEYDEPMKLMK 1209
+A + +L++
Sbjct: 555 VAGFGTHKELLE 566
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 24/219 (10%)
Query: 470 LAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETH----FKNAIEILRNVEYKW 525
L K + K+ + DE + E L+ ++V++ + E + F+ A E LR
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISA 242
Query: 526 LSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIP 585
S + A F+F + +++ FG N + ++ + L + + +I
Sbjct: 243 FSLIVF--ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIG 300
Query: 586 DVIGVFIQANVAFSRIVNFL-EAPELQSM-------NIRQKGNIENVNHVIXXXXXXXXX 637
+++ ++A+ + R++ L E P ++ N+ + ENV
Sbjct: 301 NILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEF----------R 350
Query: 638 XXXXXXPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
P + ++ V+PG VA+ GE GSGKSTL+ I
Sbjct: 351 YFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 137/528 (25%), Positives = 246/528 (46%), Gaps = 37/528 (7%)
Query: 707 LIVVYLLIGFVSTLFLMSRSLS----SVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLG 762
L+V+ L+I T ++ S +S VV+ +R + LF ++ P+SF+D G
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMR--RRLFGHMMG----MPVSFFDKQSTG 122
Query: 763 RVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ---VLFVSIPVIFLAI 819
+LSR++ D V +LI V + ++ +WQ +L V P++ +AI
Sbjct: 123 TLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAI 182
Query: 820 RLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF---EEEDRFFAKNLDLIDT 876
R+ F + M+ T V + + G + F E E + F K + +
Sbjct: 183 RVVSKRFRNISKNMQ---NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRL 239
Query: 877 NASPFFQTFAANEWLIQRLETLS-ATVISSAAFCMVL--LPPGTFTPGFIGM-ALSYGLS 932
+ ++ +IQ + +L+ A V+ +A+F V+ L GT T F M AL L
Sbjct: 240 QGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLK 299
Query: 933 LNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 992
+++ Q + ++ Q E V+E G V+ ++
Sbjct: 300 SLTNVNAQFQRGMAACQTLFTILDSEQE---KDEGKRVIE--------RATGDVEFRNVT 348
Query: 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
Y L+ I+ G + +VGR+GSGK+T+ + R + G+IL+DG D+
Sbjct: 349 FTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLR 408
Query: 1053 KLGLHDLRSRFGIIPQDPTLFNGTVRYNLD--PLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
+ L LR++ ++ Q+ LFN TV N+ Q++ ++I E + + + + +N
Sbjct: 409 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN 468
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
GLD+++ E+G S GQRQ + RALLR S IL+LDEAT+++D ++ +Q +
Sbjct: 469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 1171 DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
+ T + +AHR+ T+ ++ + DG + E L++ G ++ QL
Sbjct: 529 NRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRG-VYAQL 575
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 114/300 (38%), Gaps = 50/300 (16%)
Query: 406 SGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVL 465
S G ++ V A IG F F+ W QL I LI+L A +V I I V+
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSW----QLSIILIVL---------APIVSIAIRVV 185
Query: 466 CNA--PLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWET-HFKNAIEILRNVE 522
++K ++ + ++ LK E L+ ET F +R
Sbjct: 186 SKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLI----FGGQEVETKRFDKVSNRMRLQG 241
Query: 523 YKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNV--------PLYASNVFTFVATL 574
K +SA + S P++ A+ + L L A + +++
Sbjct: 242 MKMVSASSI----------SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSM 291
Query: 575 RLVQDPIRVIPDVIGVFIQANVAFSRIVNFL----EAPELQSMNIRQKGNIENVNHVIXX 630
+ P++ + +V F + A + L E E + + R G++E N
Sbjct: 292 IALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRN----- 346
Query: 631 XXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
P +RNI+L++ G+ VA+ G GSGKST+ + I +G IL +
Sbjct: 347 ---VTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMD 403
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 133/528 (25%), Positives = 247/528 (46%), Gaps = 37/528 (7%)
Query: 707 LIVVYLLIGFVSTLFLMSRSLS----SVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLG 762
L+V+ L+I T ++ S +S VV+ +R + LF ++ P++F+D G
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMR--RRLFGHMMG----MPVAFFDKQSTG 122
Query: 763 RVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ---VLFVSIPVIFLAI 819
+LSR++ D V +LI V + ++ +WQ +L V P++ +AI
Sbjct: 123 TLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAI 182
Query: 820 RLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAF---EEEDRFFAKNLDLIDT 876
R+ F + + M+ T V + + G + F E E + F K + +
Sbjct: 183 RVVSKRFRSISKNMQ---NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL 239
Query: 877 NASPFFQTFAANEWLIQRLETLS-ATVISSAAFCMVL--LPPGTFTPGFIGM-ALSYGLS 932
+ ++ +IQ + +L+ A V+ +A+F V+ L GT T F M AL L
Sbjct: 240 QGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLK 299
Query: 933 LNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 992
+++ Q + ++ Q E V++ G ++ ++
Sbjct: 300 SLTNVNAQFQRGMAACQTLFAILDSEQE---KDEGKRVID--------RATGDLEFRNVT 348
Query: 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
Y L+ I+ G + +VGR+GSGK+T+ + R + G IL+DG D+
Sbjct: 349 FTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLR 408
Query: 1053 KLGLHDLRSRFGIIPQDPTLFNGTVRYNLD--PLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
+ L LR++ ++ Q+ LFN TV N+ +++ ++I E + + + + +N
Sbjct: 409 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN 468
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
GLD+++ E+G S GQRQ + RALLR S IL+LDEAT+++D ++ +Q +
Sbjct: 469 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 1171 DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
+ T + +AHR+ T+ ++ + DG + E +L+ + G ++ QL
Sbjct: 529 NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG-VYAQL 575
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
P +RNI+L++ G+ VA+ G GSGKST+ + I +G IL +
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 403
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEV-LAKCHLGEAV 1105
D++ + LR + G++ QD L N ++ N+ +P ++ I+ LA H + +
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAH--DFI 122
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
E G +++V E G+ S GQRQ + RAL+ +IL+ DEAT+++D ++ ++ + +
Sbjct: 123 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
TVI +AHR+ TV + ++ + GK+ E + +L+ SL+ L
Sbjct: 183 HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
+ NI+L ++ G+ + I G GSGKSTL I
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 49
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEV-LAKCHLGEAV 1105
D++ + LR + G++ QD L N ++ N+ +P ++ I+ LA H + +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAH--DFI 128
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
E G +++V E G+ S GQRQ + RAL+ +IL+ DEAT+++D ++ ++ + +
Sbjct: 129 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
TVI +AHR+ TV + ++ + GK+ E + +L+ SL+ L
Sbjct: 189 HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
+ NI+L ++ G+ + I G GSGKSTL I
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEV-LAKCHLGEAV 1105
D++ + LR + G++ QD L N ++ N+ +P ++ I+ LA H + +
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAH--DFI 124
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
E G +++V E G+ S GQRQ + RAL+ +IL+ DEAT+++D ++ ++ + +
Sbjct: 125 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 184
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
TVI +AHR+ TV + ++ + GK+ E + +L+ SL+ L
Sbjct: 185 HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
+ NI+L ++ G+ + I G GSGKSTL I
Sbjct: 21 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 51
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 133/233 (57%), Gaps = 7/233 (3%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+++ RY+PDSP++L I+ + + G IGIVGR GSGK+TL + R P G++L+DG
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEV-LAKCHLGEAV 1105
D++ + LR + G++ QD L N ++ N+ +P ++ I+ LA H + +
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAH--DFI 124
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
E G +++V E G+ S GQRQ + RAL+ +IL+ DEAT+++D ++ ++ + +
Sbjct: 125 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 184
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
TVI +AHR+ TV + ++ + GK+ E + +L+ SL+ L
Sbjct: 185 HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
+ NI+L ++ G+ + I G GSGKSTL I
Sbjct: 21 LDNINLSIKQGEVIGIVGRAGSGKSTLTKLI 51
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 129/541 (23%), Positives = 253/541 (46%), Gaps = 45/541 (8%)
Query: 698 ENPNVSTLRLIVVYLLIGFVS--TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSF 755
+N N+ +L ++L++G +S T FL + G +K L + S+ R +S+
Sbjct: 746 QNSNLFSL----LFLILGIISFITFFLQGFTFGKA--GEILTKRLRYMVFKSMLRQDVSW 799
Query: 756 YDS--TPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQV---LFV 810
+D G + +R+++D + V L N + + + + WQ+ L
Sbjct: 800 FDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLA 859
Query: 811 SIPVIFLA--IRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF-- 866
+P+I +A + ++ K+ L G+ K +A E+I T+ + E +F
Sbjct: 860 IVPIIAIAGVVEMKMLSGQALKDKKELEGSGK--IAT---EAIENFRTVVSLTREQKFET 914
Query: 867 -FAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGM 925
+A++L + NA F Q + S +AAF G + M
Sbjct: 915 MYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFS----YAAAFRF-----GAYLVTQQLM 965
Query: 926 ALSYGLSLNSSLV---MSIQNQCTLA-NYIISVERLNQYMHVPSEAPEV--VEDNRPPPN 979
L + S++V M++ + A +Y + + + + + PE+ PN
Sbjct: 966 TFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPN 1025
Query: 980 WPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV 1037
+ G V + Y RP P VL+G+S + G + +VG +G GK+T++ L R
Sbjct: 1026 M-LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 1038 EPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWE 1094
+P G + +DG +I +L + LR++ GI+ Q+P LF+ ++ N+ D + +EI
Sbjct: 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVR 1143
Query: 1095 VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+ ++ + + + ++ V + G+ S GQ+Q + RAL+R+ IL+LDEAT+++D
Sbjct: 1144 AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 1155 NATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSL 1214
++ ++Q+ + T I +AHR+ T+ + +++ I +GK+ E+ +L+ ++G
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIY 1263
Query: 1215 F 1215
F
Sbjct: 1264 F 1264
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 15/256 (5%)
Query: 973 DNRP-----------PPNWPVVGKVDICDLQIRYRPDSPL-VLKGISCTFEGGHKIGIVG 1020
DN+P P N + G ++ ++ Y + +LKG++ + G + +VG
Sbjct: 366 DNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423
Query: 1021 RTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN 1080
+G GK+T + + RL +P G + +DG DI + + LR G++ Q+P LF T+ N
Sbjct: 424 NSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483
Query: 1081 LDPLSQH-TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139
+ + T EI + + + + + + + + D+LV E G+ S GQ+Q + RAL+R
Sbjct: 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543
Query: 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLA 1199
+IL+LDEAT+++D ++ ++Q + T I +AHR+ TV + ++ G +
Sbjct: 544 NPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIV 603
Query: 1200 EYDEPMKLMKREGSLF 1215
E +LM+ +G F
Sbjct: 604 EQGNHDELMREKGIYF 619
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 18/180 (10%)
Query: 510 HFKNAIEILRNVEYKWLSAVQLRKAYN-----------TFLFWSSPVLVSTAT---FGAC 555
+F+ + + R +++ + A L+ Y TF F + + S A FGA
Sbjct: 899 NFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAY 958
Query: 556 YFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLE-APELQSMN 614
+ NV + + + + + +A V+ S I+ +E PE+ S +
Sbjct: 959 LVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYS 1018
Query: 615 IRQ-KGNIENVNHVIXXXXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEVGSGKSTLL 673
+ K N+ N + P ++ +SLEV+ GQ +A+ G G GKST++
Sbjct: 1019 TQGLKPNMLEGN--VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKST 671
++ ++L+V+ GQ VA+ G G GKST
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKST 431
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 125/539 (23%), Positives = 247/539 (45%), Gaps = 41/539 (7%)
Query: 698 ENPNVSTLRLIVVYLLIGFVS--TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSF 755
+N N+ +L ++L++G +S T FL + G +K L + S+ R +S+
Sbjct: 746 QNSNLFSL----LFLILGIISFITFFLQGFTFGKA--GEILTKRLRYMVFKSMLRQDVSW 799
Query: 756 YDS--TPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQV---LFV 810
+D G + +R+++D + V L N + + + + WQ+ L
Sbjct: 800 FDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLA 859
Query: 811 SIPVIFLA--IRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF-- 866
+P+I +A + ++ K+ L G+ K E+I T+ + E +F
Sbjct: 860 IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIAT-----EAIENFRTVVSLTREQKFET 914
Query: 867 -FAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGF-IG 924
+A++L + NA F Q + S +V TF +
Sbjct: 915 MYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVF 974
Query: 925 MALSYGLSLNSSLVMSIQNQCTLA-NYIISVERLNQYMHVPSEAPEV--VEDNRPPPNWP 981
A+ +G M++ + A +Y + + + + + PE+ PN
Sbjct: 975 SAIVFG-------AMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM- 1026
Query: 982 VVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039
+ G V + Y RP P VL+G+S + G + +VG +G GK+T++ L R +P
Sbjct: 1027 LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP 1085
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEVL 1096
G + +DG +I +L + LR++ GI+ Q+P LF+ ++ N+ D + +EI
Sbjct: 1086 MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145
Query: 1097 AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156
+ ++ + + + ++ V + G+ S GQ+Q + RAL+R+ IL+LDEAT+++D
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 1157 TDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLF 1215
++ ++Q+ + T I +AHR+ T+ + +++ I +GK+ E+ +L+ ++G F
Sbjct: 1206 SEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYF 1264
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 15/256 (5%)
Query: 973 DNRP-----------PPNWPVVGKVDICDLQIRYRPDSPL-VLKGISCTFEGGHKIGIVG 1020
DN+P P N + G ++ ++ Y + +LKG++ + G + +VG
Sbjct: 366 DNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423
Query: 1021 RTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN 1080
+G GK+T + + RL +P G + +DG DI + + LR G++ Q+P LF T+ N
Sbjct: 424 NSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483
Query: 1081 LDPLSQH-TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139
+ + T EI + + + + + + + + D+LV E G+ S GQ+Q + RAL+R
Sbjct: 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543
Query: 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLA 1199
+IL+LDEAT+++D ++ ++Q + T I +AHR+ TV + ++ G +
Sbjct: 544 NPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIV 603
Query: 1200 EYDEPMKLMKREGSLF 1215
E +LM+ +G F
Sbjct: 604 EQGNHDELMREKGIYF 619
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 26/198 (13%)
Query: 490 KACSEALVNMKVL----KLYAWETHFKNAIEI-LRNVEYKWLSAVQLRKAYNTFLFWSSP 544
K +EA+ N + + + +ET + +++I RN ++KA+ + +S
Sbjct: 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA---------MKKAHVFGITFSFT 941
Query: 545 VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGV-------FIQANVA 597
+ ++ AC+ L + TF L LV I +G + +A V+
Sbjct: 942 QAMMYFSYAACFRFGAYLVTQQLMTFENVL-LVFSAIVFGAMAVGQVSSFAPDYAKATVS 1000
Query: 598 FSRIVNFLE-APELQSMNIRQ-KGNIENVNHVIXXXXXXXXXXXXXXXPTMRNISLEVRP 655
S I+ +E PE+ S + + K N+ N + P ++ +SLEV+
Sbjct: 1001 ASHIIRIIEKTPEIDSYSTQGLKPNMLEGN--VQFSGVVFNYPTRPSIPVLQGLSLEVKK 1058
Query: 656 GQKVAICGEVGSGKSTLL 673
GQ +A+ G G GKST++
Sbjct: 1059 GQTLALVGSSGCGKSTVV 1076
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKST 671
++ ++L+V+ GQ VA+ G G GKST
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKST 431
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEV-LAKCHLGEAV 1105
D++ + LR + G++ QD L N ++ N+ +P ++ I+ LA H + +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAH--DFI 128
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
E G +++V E G+ S GQRQ + RAL+ +IL+ D+AT+++D ++ ++ + +
Sbjct: 129 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM 188
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
TVI +AHR+ TV + ++ + GK+ E + +L+ SL+ L
Sbjct: 189 HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
+ NI+L ++ G+ + I G GSGKSTL I
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 133/233 (57%), Gaps = 7/233 (3%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEV-LAKCHLGEAV 1105
D++ + LR + G++ QD L N ++ N+ +P ++ I+ LA H + +
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAH--DFI 122
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
E G +++V E G+ S GQRQ + RAL+ +IL+ DEAT+++D ++ ++ + +
Sbjct: 123 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
TVI +A R+ TV + ++ + GK+ E + +L+ SL+ L
Sbjct: 183 HKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
+ NI+L ++ G+ + I G GSGKSTL I
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 49
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 133/233 (57%), Gaps = 7/233 (3%)
Query: 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI 1049
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1050 DISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL---DPLSQHTDQEIWEV-LAKCHLGEAV 1105
D++ + LR + G++ QD L N ++ N+ +P ++ I+ LA H + +
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAH--DFI 128
Query: 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165
E G +++V E G+ S GQRQ + RAL+ +IL+ DEAT+++D ++ ++ + +
Sbjct: 129 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 1166 RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218
TVI +A R+ TV + ++ + GK+ E + +L+ SL+ L
Sbjct: 189 HKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676
+ NI+L ++ G+ + I G GSGKSTL I
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 111/203 (54%), Gaps = 2/203 (0%)
Query: 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH 1057
DS +L+ IS + I G +G GK+T+ L R +P G+I +DG I + L
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 1058 DLRSRFGIIPQDPTLFNGTVRYNLDP--LSQHTDQEIWEVLAKCHLGEAVREKENGLDSL 1115
+ RS+ G + QD + GT+R NL +TD+++W+VL V + L++
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132
Query: 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVI 1175
V E G S GQRQ + RA LR +IL+LDEATAS+D+ ++ ++QK + + T +
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTL 192
Query: 1176 TVAHRIPTVMDCTMVLAISDGKL 1198
+AHR+ T++D + I G++
Sbjct: 193 VIAHRLSTIVDADKIYFIEKGQI 215
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLA 674
+R+IS E +P +A G G GKST+ +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFS 46
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 121 bits (303), Expect = 3e-27, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 3/229 (1%)
Query: 986 VDICDLQIRY-RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
++ D+ Y + + LK I+ G +VG TGSGK+T+ L+R + A G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDI 76
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN-LDPLSQHTDQEIWEVLAKCHLGE 1103
+ G +++K + +RS GI+PQD LFN T++YN L TD+E+ + L +
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK 1163
+ D++V G S G+RQ + R LL+ +I++ DEAT+S+D+ T+ + QK
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+ + T+I +AHR+ T+ ++ ++ GK+ E L+K G
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG 245
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 4/231 (1%)
Query: 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGK 1043
G+++ ++ Y D L+ +S T G + +VG +G+GK+T++ LFR + + G
Sbjct: 52 GRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC 110
Query: 1044 ILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL--DPLSQHTDQEIWEVLAKCHL 1101
I +DG DIS++ LRS G++PQD LFN T+ N+ ++ D E+ +
Sbjct: 111 IRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND-EVEAAAQAAGI 169
Query: 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL 1161
+A+ G + V E G S G++Q + R +L+ I++LDEAT+++D + + +
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1162 QKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
Q ++ A+ T I VAHR+ TV++ +L I DG + E L+ R G
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGG 280
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLL 673
T++++S V PGQ +A+ G G+GKST+L
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTIL 97
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 7/235 (2%)
Query: 984 GKVDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
G V D+ Y P+ P VL+G++ T G +VG GSGK+T+ L L +P G
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL--DPLSQHTDQEIWEVLAKC 1099
GK+L+DG + + H L ++ + Q+P LF + R N+ T +EI V +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
+ + G D+ V E G+ S GQRQ L RAL+R+ R+L+LD+AT+++D +
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQL 193
Query: 1160 ILQKTI--RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+Q+ + E+A TV+ + H++ +L + +G + E ++LM+R G
Sbjct: 194 RVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 122/235 (51%), Gaps = 7/235 (2%)
Query: 984 GKVDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
G V D+ Y P+ P VL+G++ T G +VG GSGK+T+ L L +P G
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL--DPLSQHTDQEIWEVLAKC 1099
GK+L+DG + + H L ++ + Q+P LF + R N+ T +EI V +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
+ + G D+ V E G+ ++GQRQ L RAL+R+ R+L+LD AT+++D +
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 1160 ILQKTI--RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+Q+ + E+A TV+ + ++ +L + +G + E ++LM+R G
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 7/235 (2%)
Query: 984 GKVDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
G V D+ Y P+ P VL+G++ T G +VG GSGK+T+ L L +P G
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL--DPLSQHTDQEIWEVLAKC 1099
GK+L+DG + + H L ++ + Q+P LF + R N+ T +EI V +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
+ + G D+ V E G+ S GQRQ L RAL+R+ R+L+LD AT+++D +
Sbjct: 134 GAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 1160 ILQKTI--RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREG 1212
+Q+ + E+A TV+ + ++ +L + +G + E ++LM+R G
Sbjct: 194 RVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 15/251 (5%)
Query: 984 GKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
G V D+ Y RPD LVL+G++ T G +VG GSGK+T+ L L +P G
Sbjct: 13 GLVQFQDVSFAYPNRPDV-LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLD-PLSQH-TDQEIWEVLAKC 1099
G++L+DG + + L + + Q+P +F +++ N+ L+Q T +EI K
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 131
Query: 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM 1159
+ G D+ V E GS S GQRQ L RAL+R+ +L+LD+AT+++D + +
Sbjct: 132 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 191
Query: 1160 ILQKTI--RAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQ 1217
+++ + E +V+ + + V +L + G + E +LM+++G
Sbjct: 192 QVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGC---- 247
Query: 1218 LVREYWSHLHS 1228
YW+ + +
Sbjct: 248 ----YWAMVQA 254
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
++ ++ +RPG+ A+ G GSGKST+ A + T G +L
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLL 75
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 27/215 (12%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL--- 1059
L +S G G++G +G+GK+TLI + L P G +LVDG +++ L +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1060 RSRFGIIPQDPTLFN-----GTVRYNLDPLSQHTDQ---EIWEVLAKCHLGEAVREKENG 1111
R + G+I Q L + G V L+ + D+ + E+L+ LG+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK------- 133
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQKTIRAE 1168
DS SN S GQ+Q + RAL ++L+ DEAT+++D AT + L K I
Sbjct: 134 HDSY----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 1169 FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202
T++ + H + V C V IS+G+L E D
Sbjct: 190 LG-LTILLITHEMDVVKRICDCVAVISNGELIEQD 223
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTILQNSWLAANVENPNVST 704
+ N+SL V GQ + G G+GKSTL+ + L E P T+G++L + E +S
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQ-----ELTTLSE 74
Query: 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRV 764
L IG + F + SS+++F + P+ D+TP V
Sbjct: 75 SELTKARRQIGMIFQHF-----------NLLSSRTVFGNVA-----LPLEL-DNTPKDEV 117
Query: 765 LSRVSSDLSIVDL 777
RV+ LS+V L
Sbjct: 118 KRRVTELLSLVGL 130
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 18/232 (7%)
Query: 996 RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG 1055
R D P L GI+ + G + +VG+ G GK++L+ AL ++ G + + G
Sbjct: 15 RSDPP-TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------- 66
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSL 1115
+PQ + N ++R N+ Q + V+ C L + +G +
Sbjct: 67 ------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-NATDMILQKTI--RAEFADC 1172
+ E G N S GQ+Q L RA+ + I + D+ +++D + I + I + +
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 1173 TVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224
T I V H + + +++ +S GK++E +L+ R+G+ F + +R Y S
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGA-FAEFLRTYAS 231
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
PT+ I+ + G VA+ G+VG GKS+LL+A+L E+ +G +
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 23/223 (10%)
Query: 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG--IDISKLG 1055
D LKGI+ + G I+G G GK+TL +++P+ G+IL D ID S+ G
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 1056 LHDLRSRFGIIPQDP--TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLD 1113
+ LR GI+ QDP LF+ +V + D V K E + +N L
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASV---------YQDVSFGAVNMKLPEDEIRKRVDNALK 129
Query: 1114 SLVVEDGSN-----WSMGQRQLFCLGRALLRRSRILVLDEATASIDN---ATDMILQKTI 1165
+E + S GQ++ + L+ ++L+LDE TA +D + M L +
Sbjct: 130 RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 1166 RAEFADCTVITVAHRIPTV-MDCTMVLAISDGKLAEYDEPMKL 1207
+ E T+I H I V + C V + +G++ P ++
Sbjct: 190 QKELG-ITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 27/215 (12%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL--- 1059
L +S G G++G +G+GK+TLI + L P G +LVDG +++ L +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1060 RSRFGIIPQDPTLFN-----GTVRYNLDPLSQHTDQ---EIWEVLAKCHLGEAVREKENG 1111
R + G+I Q L + G V L+ + D+ + E+L+ LG+
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK------- 156
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQKTIRAE 1168
DS SN S GQ+Q + RAL ++L+ D+AT+++D AT + L K I
Sbjct: 157 HDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1169 FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202
T++ + H + V C V IS+G+L E D
Sbjct: 213 LG-LTILLITHEMDVVKRICDCVAVISNGELIEQD 246
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTILQNSWLAANVENPNVST 704
+ N+SL V GQ + G G+GKSTL+ + L E P T+G++L + E +S
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQ-----ELTTLSE 97
Query: 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRV 764
L IG + F + SS+++F + P+ D+TP V
Sbjct: 98 SELTKARRQIGMIFQHF-----------NLLSSRTVFGNVA-----LPLEL-DNTPKDEV 140
Query: 765 LSRVSSDLSIVDL 777
RV+ LS+V L
Sbjct: 141 KRRVTELLSLVGL 153
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL--- 1059
L +S G G++G +G+GK+TLI + L P G +LVDG +++ L +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1060 RSRFGIIPQDPTLFN-----GTVRYNLDPLSQHTDQ---EIWEVLAKCHLGEAVREKENG 1111
R + G I Q L + G V L+ + D+ + E+L+ LG+
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK------- 156
Query: 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQKTIRAE 1168
DS SN S GQ+Q + RAL ++L+ D+AT+++D AT + L K I
Sbjct: 157 HDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1169 FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202
T++ + H V C V IS+G+L E D
Sbjct: 213 LG-LTILLITHEXDVVKRICDCVAVISNGELIEQD 246
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTILQNSWLAANVENPNVST 704
+ N+SL V GQ + G G+GKSTL+ + L E P T+G++L + E +S
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQ-----ELTTLSE 97
Query: 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRV 764
L IG + F + SS+++F + P+ D+TP V
Sbjct: 98 SELTKARRQIGXIFQHF-----------NLLSSRTVFGNVA-----LPLEL-DNTPKDEV 140
Query: 765 LSRVSSDLSIVDL 777
RV+ LS+V L
Sbjct: 141 KRRVTELLSLVGL 153
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 97/227 (42%), Gaps = 33/227 (14%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
++++ + RY D VLK ++ FE G +VG+ GSGKTTL+ L L+ A G+I
Sbjct: 11 RIELNSVSFRYNGD--YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL-DPLSQ----HTDQEIWEVLAKC 1099
+DG P DP L V Y +P SQ ++++ L
Sbjct: 68 FLDG-----------------SPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIM 110
Query: 1100 HLGEAVREKE-------NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152
L E+ K GL L D N S GQ+Q + L R +R L LDE +
Sbjct: 111 GLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSM 170
Query: 1153 IDNATDM-ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198
+D + I Q + +I V H + + D +L IS+G +
Sbjct: 171 LDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTI 217
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 12/224 (5%)
Query: 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL 1056
P ++G+S G +G++G +GSGKTT++ + L P G + + G ++ L
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP 84
Query: 1057 HDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE--KENGLDS 1114
+ G++ Q+ LF Y+ + + K + VRE + L+S
Sbjct: 85 Q--KRNVGLVFQNYALFQHMTVYDNVSFGLREKR-----VPKDEMDARVRELLRFMRLES 137
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD--C 1172
S GQ+Q L RAL R ++L+ DE A+ID L+ +R +
Sbjct: 138 YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197
Query: 1173 TVITVAHRIPTVMDCT-MVLAISDGKLAEYDEPMKLMKREGSLF 1215
T + V H ++ VL + +G + ++ P ++ ++ G+LF
Sbjct: 198 TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
++R +S ++R G+ V + G GSGK+T+L I G T+G +
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 26/239 (10%)
Query: 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG 1042
+G V + DL R R +LKGIS E G G++G G+GKTT + + L++P+ G
Sbjct: 13 MGAVVVKDL--RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70
Query: 1043 KILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGT-----VRYNLDPLSQHTDQEIWEVLA 1097
+ V G ++ + H++R +P++ + +R+ + + EI E++
Sbjct: 71 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRF-VAGFYASSSSEIEEMVE 128
Query: 1098 KCH----LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153
+ LGE ++++ S +S G + + RAL+ R+ +LDE T+ +
Sbjct: 129 RATEIAGLGEKIKDRV-----------STYSKGMVRKLLIARALMVNPRLAILDEPTSGL 177
Query: 1154 DNATDMILQKTIR-AEFADCTVITVAHRIPTV-MDCTMVLAISDGKLAEYDEPMKLMKR 1210
D ++K ++ A T++ +H + V C + I +G + E +L +R
Sbjct: 178 DVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 12/187 (6%)
Query: 1018 IVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTV 1077
++G TG+GK+ + + +V+P G++ ++G DI+ L R G +PQD LF
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 1078 RYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137
Y + + + E + G+ L+ + S G+RQ L RAL
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKL-----GIAHLLDRKPARLSGGERQRVALARAL 141
Query: 1138 LRRSRILVLDEATASIDNATDMILQKTIR---AEFADCTVITVAHR-IPTVMDCTMVLAI 1193
+ + R+L+LDE +++D T +L + +R EF D ++ V H I M V +
Sbjct: 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVM 200
Query: 1194 SDGKLAE 1200
+G++ E
Sbjct: 201 LNGRIVE 207
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + + G TG+GKT+L+ + +EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q+ + GT++ N+ +S + + V+ C L E + + + ++ E G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T+ I + + A+ T I V +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + +G
Sbjct: 219 MEHLKKADKILILHEG 234
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL---------QNSWLA 694
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I QNSW+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 695 ANVENPNV 702
N+
Sbjct: 112 PGTIKENI 119
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + + G TG+GKT+L+ + +EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q+ + GT++ N+ +S + + V+ C L E + + + ++ E G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T+ I + + A+ T I V +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + +G
Sbjct: 219 MEHLKKADKILILHEG 234
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL---------QNSWLA 694
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I QNSW+
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 695 ANVENPNV 702
N+
Sbjct: 112 PGTIKENI 119
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 25/175 (14%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
L I+ + G + ++G +GSGK+TL+ + + +P GKI D D+++L D
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RN 76
Query: 1063 FGIIPQDPTLF-NGTVRYNLD-PLS------QHTDQEIWEVLAKCHLGEAVREKENGLDS 1114
G++ Q+ L+ + TV N+ PL + D+++ EV H +D
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH-----------IDK 125
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF 1169
L+ S GQ+Q + RAL++ +L+LDE +++ D +L+ +RAE
Sbjct: 126 LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNL----DALLRLEVRAEL 176
Score = 38.1 bits (87), Expect = 0.035, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ NI+L+++ G+ +A+ G GSGKSTLL I G T G I
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.0 bits (136), Expect = 7e-08, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 30/225 (13%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI--SKLGLHDL 1059
VLKGI+ G + ++G +GSGK+T + L L + G+I++DGI++ L+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1060 RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENG-----LDS 1114
R G++ Q R+NL P H LA + + REK LD
Sbjct: 99 REEVGMVFQ---------RFNLFP---HMTVLNNITLAPMKVRKWPREKAEAKAMELLDK 146
Query: 1115 LVVEDGS-----NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK-TIRAE 1168
+ ++D + + S GQ Q + RAL +I++ DE T+++D +M+ + ++ +
Sbjct: 147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD--PEMVGEVLSVMKQ 204
Query: 1169 FAD--CTVITVAHRIPTVMDC-TMVLAISDGKLAEYDEPMKLMKR 1210
A+ T++ V H + + VL + G + E +P L R
Sbjct: 205 LANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLL 673
++ I++ +R G+ V + G GSGKST L
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFL 67
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
+ G+S + G + ++G +G GKTT + L + +P G+I D + + +D+ +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV-----NDIPPK 73
Query: 1063 F---GIIPQDPTLF-NGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKENGL--DSL 1115
+ G++ Q+ L+ + TV N+ PL ++K + + V E L D+L
Sbjct: 74 YREVGMVFQNYALYPHMTVFENIAFPLRARR-------ISKDEVEKRVVEIARKLLIDNL 126
Query: 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCT 1173
+ + S GQ+Q L RAL+++ ++L+ DE +++D MI++ I+ + T
Sbjct: 127 LDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 1174 VITVAHRIPTVMDCTMVLAI-SDGKLAEYDEPMKLMKREGSLF 1215
+ V H M +A+ + GKL +Y P ++ ++F
Sbjct: 187 SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANV 697
+S EV+ G+ VA+ G G GK+T L + G T G I + L ++
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI 70
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + + G TG+GKT+L+ + +EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ + + V+ C L E + + + ++ E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T+ I + + A+ T I V +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + +G
Sbjct: 220 MEHLKKADKILILHEG 235
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + + G TG+GKT+L+ + +EP+ GKI G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ + + V+ C L E + + + ++ E G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 141
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T+ I + + A+ T I V +
Sbjct: 142 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 201
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + +G
Sbjct: 202 MEHLKKADKILILHEG 217
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 77
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 15/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + + G TG+GKT+L+ + +EP+ GKI G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ +S + + V+ C L E + + + ++ E G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 128
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T+ I + + A+ T I V +
Sbjct: 129 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 188
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + +G
Sbjct: 189 MEHLKKADKILILHEG 204
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + + G TG+GKT+L+ + +EP+ GKI G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ + + V+ C L E + + + ++ E G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 129
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T+ I + + A+ T I V +
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 189
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + +G
Sbjct: 190 MEHLKKADKILILHEG 205
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 28/224 (12%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI--SKLGLHDL 1059
VLKGI+ G + ++G +GSGK+T + L L + G+I++DGI++ L+ +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1060 RSRFGIIPQDPTLF-NGTVRYN--LDPLS------QHTDQEIWEVLAKCHLGEAVREKEN 1110
R G++ Q LF + TV N L P+ + + + E+L K L + +
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK-TIRAEF 1169
L S GQ Q + RAL +I++ DE T+++D +M+ + ++ +
Sbjct: 138 SL-----------SGGQAQRVAIARALAMEPKIMLFDEPTSALD--PEMVGEVLSVMKQL 184
Query: 1170 AD--CTVITVAHRIPTVMDC-TMVLAISDGKLAEYDEPMKLMKR 1210
A+ T++ V H + + VL + G + E +P L R
Sbjct: 185 ANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI---SKLGLHD 1058
+LKGIS + + G + I+G +GSGK+TL+ L L P GK+ ++G ++ ++ L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1059 LRSR-FG-------IIPQDPTLFNGTV-RYNLDPLSQHTDQEIWEVLAKCHLGEAVREKE 1109
LR+R G +IP+ L N V + + + +L++ LG+ + K
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA-TDMILQKTIRAE 1168
L S G++Q + RAL +L DE T ++D+A T ++ ++
Sbjct: 139 YEL-----------SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 1169 FADCTVITVAHRIPTVMDCTMVLAISDGKL 1198
+++ V H L + DGK+
Sbjct: 188 EGGTSIVMVTHERELAELTHRTLEMKDGKV 217
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIL 688
++ ISL V+ G+ V+I G GSGKSTLL ILG + P T+G +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLL-YILGLLDAP-TEGKVF 62
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 104/218 (47%), Gaps = 25/218 (11%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG--LHDLR 1060
L +S E G I+G TG+GKT + + P G+IL+DG D++ L HD+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI- 74
Query: 1061 SRFGIIPQDPTLF-NGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118
+ Q+ +LF + V+ NL+ + ++ VL ++ ++ L+
Sbjct: 75 ---AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA--------RDLKIEHLLDR 123
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID-----NATDMILQKTIRAEFADCT 1173
+ S G++Q L RAL+ +IL+LDE +++D NA +M+ ++ + T
Sbjct: 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML---SVLHKKNKLT 180
Query: 1174 VITVAH-RIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210
V+ + H + + + + DGKL + +P ++ ++
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 15/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + + G TG+GKT+L+ + +EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ +S + + V+ C L E + + + ++ E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKTIRAEFADCTVITVAHR 1180
S GQ+ L RA+ + + + +LD +D T+ I + + A+ T I V +
Sbjct: 159 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + +G
Sbjct: 219 MEHLKKADKILILHEG 234
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + + G TG+GKT+L+ + +EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ + + V+ C L E + + + ++ E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDM-ILQKTIRAEFADCTVITVAHR 1180
S GQ+ L RA+ + + + +LD +D T+ I + + A+ T I V +
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + +G
Sbjct: 220 MEHLKKADKILILHEG 235
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 32/223 (14%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL--- 1059
LK ++ + G + I+G +GSGK+T++ + L +P G++ +D I + L +L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 1060 -RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAK---CHLGEAVREKENGLDSL 1115
R + G + Q ++NL PL + ++ K GE R++ L+ L
Sbjct: 81 RRDKIGFVFQ---------QFNLIPLLTALENVELPLIFKYRGAMSGEERRKR--ALECL 129
Query: 1116 VVED---------GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQK 1163
+ + + S GQ+Q + RAL I++ D+ T ++D+ T M L K
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMK 1206
+ E TV+ V H I ++ + DG++ E +E ++
Sbjct: 190 KLNEEDGK-TVVVVTHDINVARFGERIIYLKDGEV-EREEKLR 230
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 37/61 (60%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTL 705
++N++L ++ G+ V+I G GSGKST+L I T+G + ++ ++++ ++ +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 706 R 706
R
Sbjct: 81 R 81
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + I G TGSGKT+L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ + + V+ C L + + + ++++ E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T + + + + A+ T I V +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + G
Sbjct: 220 MEHLRKADKILILHQG 235
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 8/151 (5%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RS 1061
+KGI G + ++G G+GKTT + A+ LV GKI+ +G DI+ H + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 1062 RFGIIPQDPTLF-NGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVED 1119
++P+ +F TV NL + D+E + + R KE L L
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKER-LKQL---- 136
Query: 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150
G S G++Q +GRAL R ++L DE +
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPS 167
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690
++ I L+V GQ V + G G+GK+T L+AI G V +G I+ N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + I G TGSGKT+L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ + + V+ C L + + + ++++ E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T + + + + A+ T I V +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + G
Sbjct: 220 MEHLRKADKILILHQG 235
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 32/223 (14%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL--- 1059
LK ++ + G + I+G +GSGK+T++ + L +P G++ +D I + L +L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 1060 -RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAK---CHLGEAVREKENGLDSL 1115
R + G + Q ++NL PL + ++ K GE R++ L+ L
Sbjct: 81 RRDKIGFVFQ---------QFNLIPLLTALENVELPLIFKYRGAMSGEERRKR--ALECL 129
Query: 1116 VVED---------GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD---MILQK 1163
+ + + S GQ+Q + RAL I++ D+ T ++D+ T M L K
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK 189
Query: 1164 TIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMK 1206
+ E TV+ V H I ++ + DG++ E +E ++
Sbjct: 190 KLNEEDGK-TVVVVTHDINVARFGERIIYLKDGEV-EREEKLR 230
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 37/61 (60%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTL 705
++N++L ++ G+ V+I G GSGKST+L I T+G + ++ ++++ ++ +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 706 R 706
R
Sbjct: 81 R 81
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + I G TGSGKT+L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ +S + + V+ C L + + + ++++ E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 158
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T + + + + A+ T I V +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 218
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + G
Sbjct: 219 MEHLRKADKILILHQG 234
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + I G TGSGKT+L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ + + V+ C L + + + ++++ E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T + + + + A+ T I V +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + G
Sbjct: 220 MEHLRKADKILILHQG 235
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 26/220 (11%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL--- 1059
LK ++ + G + I G +GSGK+T + + L +P G++ +D I + L +L
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 1060 -RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAK---CHLGEAVRE------KE 1109
R + G + Q ++NL PL + ++ K GE R+ K
Sbjct: 81 RRDKIGFVFQ---------QFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKX 131
Query: 1110 NGLDSLVVEDGSN-WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA- 1167
L+ N S GQ+Q + RAL I++ DE T ++D+ T + + ++
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
Query: 1168 -EFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMK 1206
E TV+ V H I ++ + DG++ E +E ++
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYLKDGEV-EREEKLR 230
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 36/61 (59%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTL 705
++N++L ++ G+ V+I G GSGKST L I T+G + ++ ++++ ++ +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 706 R 706
R
Sbjct: 81 R 81
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061
VLK I+ E G + I G TGSGKT+L+ + +E + G I G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 99
Query: 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121
R Q + GT++ N+ + + V+ C L + + + ++++ E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIRAEFADCTVITVAHR 1180
S GQR L RA+ + + + +LD +D T + + + + A+ T I V +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 1181 IPTVMDCTMVLAISDG 1196
+ + +L + G
Sbjct: 220 MEHLRKADKILILHQG 235
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 25/215 (11%)
Query: 995 YRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL 1054
Y + + ++ G + ++G+ G GK+TL+ L + P GKI
Sbjct: 13 YYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI---------- 62
Query: 1055 GLHDLRSRFGIIPQDPTLFNGTVRYN-LDPLSQHTDQEIWEVLA-KCHLGEAVREKEN-- 1110
++ G +PQ F+ Y+ LD + I K H + + +
Sbjct: 63 ---EVYQSIGFVPQ---FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL 116
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNAT-DMILQKTIR-AE 1168
L L + ++ S GQRQL + RA+ ++++LDE T+++D A D++L I A+
Sbjct: 117 NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176
Query: 1169 FADCTVITVAH---RIPTVMDCTMVLAISDGKLAE 1200
+ TV+ H ++ + + T++L + K E
Sbjct: 177 SQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGE 211
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ ++ ++ G +A+ G+ G GKSTLL +LG QG I
Sbjct: 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG 1042
+G ++ + I R +K +S + G + ++G +G GKTT + + L EP G
Sbjct: 2 IGXAEVKLINIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRG 61
Query: 1043 KILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEV----LAK 1098
+I ++ ++ D + P++ + Y L P D + + + K
Sbjct: 62 QIYIEDNLVA-----DPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPK 116
Query: 1099 CHLGEAVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+ + VRE + GL L+ S GQRQ LGRA++RR ++ + DE +++D
Sbjct: 117 QEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
Score = 33.1 bits (74), Expect = 0.96, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVE 698
++++SLE++ G+ + + G G GK+T L I G T+G I L A+ E
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPE 74
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 26/225 (11%)
Query: 1005 GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG----GKILVDGIDISKLGLHDLR 1060
GIS IVG + SGK+T+I A+ + + P G G++L G D+ + +LR
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 1061 ----SRFGIIPQ------DPTLFNGTVRYNLDPLSQHTDQEIW---EVLAKCHLGEAVRE 1107
++PQ +PT+ + + D + H + W E++ K E +R
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTM--KVIEHFKDTVEAHGVR--WSHSELIEKA--SEKLRM 139
Query: 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD--MILQKTI 1165
++++ S G +Q + ALL +L+LDE T+++D T +I
Sbjct: 140 VRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKE 199
Query: 1166 RAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209
+ T+I V H I + V I G L EY+ ++ K
Sbjct: 200 LKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFK 244
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 36/220 (16%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
K++I DL + Y D P VL+ I+ T E G+ + G G GKTTL+ + ++P G+I
Sbjct: 10 KLEIRDLSVGY--DKP-VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1045 LVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEA 1104
+ +G+ I+K ++ + +P++ + P + + V + +
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIV----------PRKISVEDYLKAVASLYGVKVN 111
Query: 1105 VREKENGLDSLVVEDGSN----WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMI 1160
E + L+S+ V D S G + L LL + I VLD+ +ID +
Sbjct: 112 KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK 171
Query: 1161 LQKTI--------------RAEFADCTVITVAHRIPTVMD 1186
+ K+I R E + C V H+ T +D
Sbjct: 172 VLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 983 VGKVDICDLQIRYRPDSPL---VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP 1039
+G++++ ++ + +PL L+ +S G + + G TGSGK+TL+ + L+EP
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 1040 AGGKILVDGIDISKLGLHDLRSRFGIIPQDP--TLFNGTV--RYNLDPLSQHTDQEIWEV 1095
G +L DG + +++R GI Q P F V + + D++ +
Sbjct: 62 TSGDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 1096 LAKCHLGEAVREKENGLDSLVVEDGSNW--SMGQRQLFCLGRALLRRSRILVLDEATASI 1153
+ K E V GLD +D + S G+++ + ++ IL+LDE +
Sbjct: 119 VKKAM--EFV-----GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 171
Query: 1154 DNATDMILQKTI-RAEFADCTVITVAHRIPTVMD-CTMVLAISDGK 1197
D L + + + + TVI ++H I TV++ V+ + GK
Sbjct: 172 DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGK 217
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ N+SL + G+ + + G GSGKSTLL + G + T G +L
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 67
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 22/226 (9%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
++ +S + G + ++G +G GKTT + + L EP+ G+I + KL + D
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG----DKL-VADPEKG 73
Query: 1063 FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEV----LAKCHLGEAVREKEN--GLDSLV 1116
+ P+D + Y L P D + + + + + + VRE GL L+
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL 133
Query: 1117 VEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD----- 1171
S GQRQ LGRA++R+ ++ ++DE +++D L+ +RAE
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK----LRVRMRAELKKLQRQL 189
Query: 1172 -CTVITVAHRIPTVMDCTMVLAISD-GKLAEYDEPMKLMKREGSLF 1215
T I V H M +A+ + G L + P ++ + + F
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVE 698
+R +SLEV+ G+ + + G G GK+T L I G ++G I L A+ E
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE 71
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 31/224 (13%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS---KLGLH 1057
+ L ++ E G + GI+G +G+GKTT + + L P+ G++ D ++ KL +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 1058 DLRSRFGIIPQDPTLF-NGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSL 1115
+ G++ Q L+ N T N+ PL+ ++K + + V E LD
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-------MSKEEIRKRVEEVAKILDIH 131
Query: 1116 VVEDG--SNWSMGQRQLFCLGRALLRRSRILVLDEATASID---NATDMILQKTIRAEFA 1170
V + S GQ+Q L RAL++ +L+LDE +++D + L K +++
Sbjct: 132 HVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 1171 DCTVITVAHRIPTVMDCTMVLAISD-------GKLAEYDEPMKL 1207
T++ V+H D + AI+D GKL + +P L
Sbjct: 192 -VTLLVVSH------DPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTILQNSWLAAN 696
+ N+++ + G++ I G G+GK+T + I G +VP T + +A+N
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 21/224 (9%)
Query: 985 KVDICDLQIRYRPDSPL---VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG 1041
++++ ++ + +PL L+ +S G + + G TGSGK+TL+ + L+EP
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1042 GKILVDGIDISKLGLHDLRSRFGIIPQDP--TLFNGTV--RYNLDPLSQHTDQEIWEVLA 1097
G +L DG + +++R GI Q P F V + + D++ ++
Sbjct: 62 GDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 1098 KCHLGEAVREKENGLDSLVVEDGSNW--SMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155
K E V GLD +D + S G+++ + ++ IL+LDE +D
Sbjct: 119 KAM--EFV-----GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 1156 ATDMILQKTI-RAEFADCTVITVAHRIPTVMD-CTMVLAISDGK 1197
L + + + + TVI ++H I TV++ V+ + GK
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGK 215
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688
+ N+SL + G+ + + G GSGKSTLL + G + T G +L
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 65
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 42/201 (20%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTL 1072
G IGIVG G GKTT + L + EP GKI
Sbjct: 312 GEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI---------------------------E 344
Query: 1073 FNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN----------GLDSLVVEDGSN 1122
++ TV Y + + ++E+L+K +A + N G+ L + +
Sbjct: 345 WDLTVAYKPQYIKADYEGTVYELLSKI---DASKLNSNFYKTELLKPLGIIDLYDREVNE 401
Query: 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR--AEFADCTVITVAHR 1180
S G+ Q + LLR + I +LDE +A +D + + + IR E + T + V H
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Query: 1181 IPTVMDCTMVLAISDGKLAEY 1201
+ + + L + +G+ +Y
Sbjct: 462 VLXIDYVSDRLXVFEGEPGKY 482
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEP--AGGKILVDGIDISKLGLHDLRSRFGIIPQDP 1070
G +GIVG G+GK+T + L + P G DG+ I ++L++ F
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV-IRAFRGNELQNYF------E 99
Query: 1071 TLFNGTVRYNLDP-----LSQHTDQEIWEVLAKC----HLGEAVREKENGLDSLVVEDGS 1121
L NG +R + P + + ++ E+L K L E V+ E L++++ +
Sbjct: 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALE--LENVLEREIQ 157
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI 1181
+ S G+ Q + ALLR + DE ++ +D + + IR + + V
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Query: 1182 PTVMD 1186
V+D
Sbjct: 218 LAVLD 222
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 16/145 (11%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVST 704
++ NI+LEV G+KV I G GSGK+TLL AI G +P++ G I N + N +
Sbjct: 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS-GNIFINGMEVRKIRNYIRYS 77
Query: 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAP----MSFYDSTP 760
L Y + V+ + + L + + LF ++L +L Y +
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGL------DRDLFLEMLKALKLGEEILRRKLYKLSA 131
Query: 761 LGRVLSRVSSDLS----IVDLDVPF 781
VL R S L+ IV LD PF
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPF 156
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTL 1072
G K+ I+G GSGKTTL+ A+ L+ P G I ++G+++ K +R+ P
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK-----IRNYIRYSTNLPEA 83
Query: 1073 FNGTVRYN----LDPLSQHTDQEIW-EVLAKCHLGEAV-REKENGLDSLVVEDGSNWSMG 1126
+ V N L + D++++ E+L LGE + R K L S G
Sbjct: 84 YEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKL-----------SAG 132
Query: 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166
Q L AL + I+ LDE ++D A ++ + I+
Sbjct: 133 QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK 172
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 40/242 (16%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS---KLGLH 1057
+ L ++ E G + GI+G +G+GKTT + + L P+ G++ D ++ KL +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 1058 DLRSRFGIIPQDPTLF-NGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSL 1115
+ G++ Q L+ N T N+ PL+ ++K + + V E LD
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-------MSKEEIRKRVEEVAKILDIH 131
Query: 1116 VVEDG--SNWSMGQRQLFCLGRALLRRSRILVLDEATASID---NATDMILQKTIRAEFA 1170
V + S Q+Q L RAL++ +L+LDE +++D + L K +++
Sbjct: 132 HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191
Query: 1171 DCTVITVAHRIPTVMDCTMVLAISD-------GKLAE-------YDEPMKLMKREGSLFG 1216
T++ V+H D + AI+D GKL + YD P+ + + SL G
Sbjct: 192 -VTLLVVSH------DPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI--QVASLIG 242
Query: 1217 QL 1218
++
Sbjct: 243 EI 244
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTILQNSWLAAN 696
+ N+++ + G++ I G G+GK+T + I G +VP T + +A+N
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQD-PT 1071
G IGIVG G GKTT + L + EP GK+ D K PQ
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK-------------PQYIKA 428
Query: 1072 LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131
+ GTV Y L LS+ ++ K L + + G+ L + + S G+ Q
Sbjct: 429 EYEGTV-YEL--LSKIDSSKLNSNFYKTELLKPL-----GIIDLYDRNVEDLSGGELQRV 480
Query: 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRA--EFADCTVITVAHR---IPTVMD 1186
+ LLR + I +LDE +A +D + + + IR E + T + V H I V D
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 540
Query: 1187 CTMVLAISDGKLAEYDEPMKLMKREG 1212
+V G+ PM + REG
Sbjct: 541 RLIVFEGEPGRHGRALPPMGM--REG 564
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQD-PT 1071
G IGIVG G GKTT + L + EP GK+ D K PQ
Sbjct: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK-------------PQYIKA 414
Query: 1072 LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131
+ GTV Y L LS+ ++ K L + + G+ L + + S G+ Q
Sbjct: 415 EYEGTV-YEL--LSKIDSSKLNSNFYKTELLKPL-----GIIDLYDRNVEDLSGGELQRV 466
Query: 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRA--EFADCTVITVAHR---IPTVMD 1186
+ LLR + I +LDE +A +D + + + IR E + T + V H I V D
Sbjct: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
Query: 1187 CTMVLAISDGKLAEYDEPMKLMKREG 1212
+V G+ PM + REG
Sbjct: 527 RLIVFEGEPGRHGRALPPMGM--REG 550
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 34/171 (19%)
Query: 989 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048
C+ + Y + ++L + + GI G G GK+TL+ A+ A G+ VDG
Sbjct: 439 CEFSLAY--GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------ANGQ--VDG 488
Query: 1049 IDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLG--EAVR 1106
+ + R+ + V +++D H+D + + + + +G EA++
Sbjct: 489 FPTQE----ECRTVY-------------VEHDID--GTHSDTSVLDFVFESGVGTKEAIK 529
Query: 1107 EK--ENGL-DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+K E G D ++ S S G + L RA+LR + IL+LDE T +D
Sbjct: 530 DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P + +I+ + ++A+ G G+GKSTL+ + GE+ T G +
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 16/198 (8%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
L G+S + G I+G GSGK+TLI + ++ G++ + DI+ +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YH 81
Query: 1063 FGIIP--QDPT-LFNGTVRYNL---------DPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
+GI+ Q P L TV NL PL+ ++ W + + +A + E
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK-WIPKEEEMVEKAFKILEF 140
Query: 1111 -GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI-DNATDMILQKTIRAE 1168
L L S GQ +L +GRAL+ +++V+DE A + I + +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1169 FADCTVITVAHRIPTVMD 1186
T + + HR+ V++
Sbjct: 201 AKGITFLIIEHRLDIVLN 218
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 16/198 (8%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
L G+S + G I+G GSGK+TLI + ++ G++ + DI+ +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YH 81
Query: 1063 FGII-----PQD-------PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
+GI+ PQ L G + PL+ ++ W + + +A + E
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKK-WIPKEEEMVEKAFKILEF 140
Query: 1111 -GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI-DNATDMILQKTIRAE 1168
L L S GQ +L +GRAL+ +++V+D+ A + I + +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 1169 FADCTVITVAHRIPTVMD 1186
T + + HR+ V++
Sbjct: 201 AKGITFLIIEHRLDIVLN 218
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 16/198 (8%)
Query: 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062
L G+S + G I+G GSGK+TLI + ++ G++ + DI+ +L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 1063 FGII-----PQD-------PTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
+GI+ PQ L G + PL+ ++ W + + +A + E
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKK-WIPKEEEMVEKAFKILEF 140
Query: 1111 -GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI-DNATDMILQKTIRAE 1168
L L S GQ +L +GRAL+ +++V+DE A + I + +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1169 FADCTVITVAHRIPTVMD 1186
T + + HR+ V++
Sbjct: 201 AKGITFLIIEHRLDIVLN 218
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 34/171 (19%)
Query: 989 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048
C+ + Y + ++L + + GI G G GK+TL A+ A G+ VDG
Sbjct: 439 CEFSLAY--GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQ--VDG 488
Query: 1049 IDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLG--EAVR 1106
+ + R+ + V +++D H+D + + + + +G EA++
Sbjct: 489 FPTQE----ECRTVY-------------VEHDID--GTHSDTSVLDFVFESGVGTKEAIK 529
Query: 1107 EK--ENGL-DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+K E G D + S S G + L RA+LR + IL+LDE T +D
Sbjct: 530 DKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P + +I+ + ++A+ G G+GKSTL+ + GE+ T G +
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 34/171 (19%)
Query: 989 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048
C+ + Y + ++L + + GI G G GK+TL A+ A G+ VDG
Sbjct: 433 CEFSLAY--GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQ--VDG 482
Query: 1049 IDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLG--EAVR 1106
+ + R+ + V +++D H+D + + + + +G EA++
Sbjct: 483 FPTQE----ECRTVY-------------VEHDID--GTHSDTSVLDFVFESGVGTKEAIK 523
Query: 1107 EK--ENGL-DSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+K E G D + S S G + L RA+LR + IL+LDE T +D
Sbjct: 524 DKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
P + +I+ + ++A+ G G+GKSTL+ + GE+ T G +
Sbjct: 681 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 36/247 (14%)
Query: 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKI 1044
K+ + DL RY VLKG+S G I I+G +GSGK+T + + L +P+ G I
Sbjct: 6 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1045 LVDGIDIS-------------KLGLHDLRSRFGIIPQDPTLFNG-TVRYNLDP------- 1083
+V+G +I+ K L LR+R ++ Q L++ TV N+
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 1084 LSQHTDQE-IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142
LS+H +E + LAK + E + K + S GQ+Q + RAL
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYP----------VHLSGGQQQRVSIARALAMEPD 173
Query: 1143 ILVLDEATASID-NATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200
+L+ DE T+++D +L+ + T++ V H + + V+ + GK+ E
Sbjct: 174 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233
Query: 1201 YDEPMKL 1207
+P ++
Sbjct: 234 EGDPEQV 240
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH--TQGTI 687
+R +SL+V PG+ AI G GSGKSTL A + G + T GT+
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH--TQGTI 687
+R +SL+V PG+ AI G GSGKSTL A + G + T GT+
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 79
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 1006 ISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065
++ T + G + ++G +G GKTT + + L EP G+I D++ L D +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 87
Query: 1066 IPQDPTLF-NGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKEN--GLDSLVVEDGS 1121
+ Q ++ + TV N+ PL + K + + VR ++ L+ +
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLK-------IKKFPKDEIDKRVRWAAELLQIEELLNRYPA 140
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA--EFADCTVITVAH 1179
S GQRQ + RA++ +L++DE +++D + ++ I+ + T I V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 1180 RIPTVMDCTMVLAISD-GKLAEYDEPMKLMKREGSLF 1215
M +A+ + G+L + P ++ R S+F
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 1006 ISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065
++ T + G + ++G +G GKTT + + L EP G+I D++ L D +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RNISM 88
Query: 1066 IPQDPTLF-NGTVRYNLD-PLSQHTDQEIWEVLAKCHLGEAVREKEN--GLDSLVVEDGS 1121
+ Q ++ + TV N+ PL + K + + VR ++ L+ +
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLK-------IKKFPKDEIDKRVRWAAELLQIEELLNRYPA 141
Query: 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA--EFADCTVITVAH 1179
S GQRQ + RA++ +L++DE +++D + ++ I+ + T I V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 1180 RIPTVMDCTMVLAISD-GKLAEYDEPMKLMKREGSLF 1215
M +A+ + G+L + P ++ R S+F
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 36/224 (16%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV-----DGIDISKLG 1055
+V K I+ G + VG +G GK+TL+ + L G + + + ++ G
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL-----DPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
+ + + + P N + L + ++Q +Q + EVL HL + K
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ-VAEVLQLAHL---LDRKPK 132
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
L S GQRQ +GR L+ + +LDE +++D A L+ +R E +
Sbjct: 133 AL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA----LRVQMRIEIS 177
Query: 1171 DC------TVITVAH-RIPTVMDCTMVLAISDGKLAEYDEPMKL 1207
T+I V H ++ + ++ + G++A+ +P++L
Sbjct: 178 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 36/224 (16%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV-----DGIDISKLG 1055
+V K I+ G + VG +G GK+TL+ + L G + + + ++ G
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL-----DPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
+ + + + P N + L + ++Q +Q + EVL HL + K
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ-VAEVLQLAHL---LDRKPK 132
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
L S GQRQ +GR L+ + +LDE +++D A L+ +R E +
Sbjct: 133 AL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA----LRVQMRIEIS 177
Query: 1171 DC------TVITVAH-RIPTVMDCTMVLAISDGKLAEYDEPMKL 1207
T+I V H ++ + ++ + G++A+ +P++L
Sbjct: 178 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 30/236 (12%)
Query: 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
+ Y ++ +S G + I+G G+GK+TL+ L + P+ G+ + G +++
Sbjct: 17 LHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76
Query: 1053 KLGLHDLRSRFGIIPQD-----PTLFNGTVRYNLDPLSQHTD-QEIWEVLAKCHLGEAVR 1106
L ++ Q P + ++ P D Q + +V+A
Sbjct: 77 SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMA--------- 127
Query: 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR------RSRILVLDEATASID----NA 1156
+ +L D S G++Q L R L + R L LDE T+++D
Sbjct: 128 --QTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQH 185
Query: 1157 TDMILQKTIRAE-FADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKRE 1211
T +L++ R E A C V+ + D M+LA GKL P +++ E
Sbjct: 186 TLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA--QGKLVACGTPEEVLNAE 239
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
++SL + G+ VAI G G+GKSTLL + G + + G
Sbjct: 29 DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 992 QIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-GGKILVDGID 1050
QI +LK IS G K + G G+GKTTL+ L EPA G + + G
Sbjct: 26 QIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-NAYEPATSGTVNLFGKX 84
Query: 1051 ISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKC--------HLG 1102
K+G R I G V ++L Q ++ I V++ +
Sbjct: 85 PGKVGYSAETVRQHI---------GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 1103 EAVREKENGLDSLVVEDGSN------WSMGQRQLFCLGRALLRRSRILVLDEATASID 1154
+ +R + + L LV S G++Q + RAL + ++L+LDE A +D
Sbjct: 136 DEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
++ IS ++ G K + G G+GK+TLL + P T GT+
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 36/224 (16%)
Query: 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV-----DGIDISKLG 1055
+V K I+ G + VG +G GK+TL+ + L G + + + ++ G
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 1056 LHDLRSRFGIIPQDPTLFNGTVRYNL-----DPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110
+ + + + P N + L + ++Q +Q + EVL HL + K
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ-VAEVLQLAHL---LDRKPK 132
Query: 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA 1170
L S GQRQ +GR L+ + +LD+ +++D A L+ +R E +
Sbjct: 133 AL-----------SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAA----LRVQMRIEIS 177
Query: 1171 DC------TVITVAH-RIPTVMDCTMVLAISDGKLAEYDEPMKL 1207
T+I V H ++ + ++ + G++A+ +P++L
Sbjct: 178 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 26/227 (11%)
Query: 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI--SKLGLHDL 1059
VL IS + + G + I+G +G GKTTL+ L +P G+I + G I L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 1060 RSRFGIIPQDPTLFNG-----TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDS 1114
R G + Q+ LF + Y L T QE + A L G+
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLEL--------TGISE 130
Query: 1115 LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC-- 1172
L S GQ+Q L RAL +++LDE +++D L++ IR +
Sbjct: 131 LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAALR 186
Query: 1173 ----TVITVAH-RIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSL 1214
+ + V+H R + + + G++ + P +L ++ L
Sbjct: 187 ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADL 233
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678
P + +ISL + PG+ + I G G GK+TLL + G
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 659 VAICGEVGSGKSTLLAAILGEVPHTQGTI 687
+ + GE GSGK+TL+ A++ E+P Q I
Sbjct: 178 IVVAGETGSGKTTLMKALMQEIPFDQRLI 206
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 100/228 (43%), Gaps = 44/228 (19%)
Query: 1016 IGIVGRTGSGKTTLIGALFRLVEPAGGKILVD-GIDISKLGLHDLRSRFGIIPQDPTLFN 1074
+G++G+ G GKTT++ L G+I+ + G SK+G ++ RF + ++N
Sbjct: 28 LGVLGKNGVGKTTVLKIL-------AGEIIPNFGDPNSKVGKDEVLKRF----RGKEIYN 76
Query: 1075 -------------GTVRYNLDPLSQHTDQEIWEVLAKCH---LGEAVREKENGLDSLVVE 1118
++Y ++ S+ + E+L K + V+E N + +L +
Sbjct: 77 YFKELYSNELKIVHKIQY-VEYASKFLKGTVNEILTKIDERGKKDEVKELLN-MTNLWNK 134
Query: 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVA 1178
D + S G Q + +LLR + + + D+ ++ +D M + K IR + VI V
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194
Query: 1179 HRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSHL 1226
H + + T ++ I G E S++G++ + Y + +
Sbjct: 195 HDLIVLDYLTDLIHIIYG--------------ESSVYGRVSKSYAARV 228
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 33.1 bits (74), Expect = 0.96, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
PT N+ + + + I G G+GKSTLL + E P + G
Sbjct: 5 PTTENLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFG 46
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
++GI G G GK+T I AL L+ AG K+ V +D S
Sbjct: 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS 1052
++GI G G GK+T I AL L+ AG K+ V +D S
Sbjct: 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 1108 KENGLDSLVV-EDGSNWSMGQRQLFCLGRALLRRSR---ILVLDEATASIDNATDMILQK 1163
+E GL L + + + S G+ Q L L R R + VLDE T + A LQ+
Sbjct: 715 REVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR 774
Query: 1164 T-IRAEFADCTVITVAHRIPTVMDCTMVLAI------SDGKLAEYDEPMKLMKREGSLFG 1216
++ A TVI V H++ V VL I G+L P ++ + GS+
Sbjct: 775 QLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTA 834
Query: 1217 QLVR 1220
+R
Sbjct: 835 PYLR 838
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687
G+ V +CG GSGK+T + +I+ +P + I
Sbjct: 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERII 202
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
Length = 184
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 1015 KIGIVGRTGSGKTTLIGALFRLVEPA-GGKILVDGIDISK--LGLHDLRSR 1062
K+ IVG TGSGKTTL+ L + + G + GID+ + + D R R
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKR 54
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A
Dimeric Gtpase
Length = 171
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 1015 KIGIVGRTGSGKTTLIGALFRLVEPA-GGKILVDGIDISK--LGLHDLRSR 1062
K+ IVG TGSGKTTL+ L + + G + GID+ + + D R R
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKR 52
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILG 678
+S EVR G+ + + G G+GKSTLLA + G
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 78 QKVAAVVNSCLGIAYLCLGTWILEEKLRKTHTALPLNWW 116
Q + V G+ Y L W+ EE++ KTH A +WW
Sbjct: 145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA---HWW 180
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILG 678
+S EVR G+ + + G G+GKSTLLA + G
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA--GGKILVDGIDISKLG 1055
D +LKG++ G ++G G+GK+TL L E G+IL+DG +I +L
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 1056 LHDLRSRFGI 1065
D R+R G+
Sbjct: 74 -PDERARKGL 82
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
++N+S+++ G VA+ G GSGKSTL+ +L
Sbjct: 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
++N+S+++ G VA+ G GSGKSTL+ +L
Sbjct: 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
++N+S+++ G VA+ G GSGKSTL+ +L
Sbjct: 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,363,959
Number of Sequences: 62578
Number of extensions: 1308547
Number of successful extensions: 3936
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3603
Number of HSP's gapped (non-prelim): 252
length of query: 1232
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1122
effective length of database: 8,089,757
effective search space: 9076707354
effective search space used: 9076707354
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)