Query 000904
Match_columns 1232
No_of_seqs 656 out of 4247
Neff 7.6
Searched_HMMs 46136
Date Tue Apr 2 00:35:51 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 2E-216 4E-221 2031.2 121.5 994 232-1227 122-1380(1381)
2 PLN03130 ABC transporter C fam 100.0 2E-166 4E-171 1665.4 145.5 1173 27-1225 26-1477(1622)
3 TIGR00957 MRP_assoc_pro multi 100.0 2E-162 3E-167 1632.1 147.8 1089 114-1223 99-1521(1522)
4 PLN03232 ABC transporter C fam 100.0 3E-162 7E-167 1626.8 145.5 1174 27-1225 26-1474(1495)
5 TIGR01271 CFTR_protein cystic 100.0 2E-154 4E-159 1548.9 126.7 981 232-1224 3-1454(1490)
6 PTZ00243 ABC transporter; Prov 100.0 4E-148 8E-153 1487.6 125.2 997 230-1226 57-1550(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 3E-110 6E-115 1036.6 91.1 901 298-1223 16-1226(1228)
8 PTZ00265 multidrug resistance 100.0 2.9E-95 6E-100 968.8 116.8 917 299-1222 49-1465(1466)
9 KOG0058 Peptide exporter, ABC 100.0 1E-85 2.2E-90 777.7 56.0 510 708-1225 191-707 (716)
10 COG2274 SunT ABC-type bacterio 100.0 6.5E-78 1.4E-82 742.7 61.5 509 709-1222 198-708 (709)
11 COG1132 MdlB ABC-type multidru 100.0 1.6E-74 3.6E-79 718.6 62.9 504 713-1223 60-565 (567)
12 PRK11174 cysteine/glutathione 100.0 7.4E-73 1.6E-77 707.6 64.4 506 711-1223 69-585 (588)
13 TIGR00958 3a01208 Conjugate Tr 100.0 8.7E-73 1.9E-77 717.2 62.3 500 711-1219 207-711 (711)
14 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.4E-72 5.3E-77 713.6 65.6 504 709-1221 180-684 (686)
15 PRK10790 putative multidrug tr 100.0 1.8E-71 3.8E-76 695.3 65.1 503 711-1224 71-577 (592)
16 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.6E-72 1.6E-76 712.3 62.8 507 709-1219 198-709 (710)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 2.7E-71 5.9E-76 706.4 62.7 501 711-1220 202-707 (708)
18 KOG0055 Multidrug/pheromone ex 100.0 7.9E-73 1.7E-77 702.6 46.7 513 705-1223 71-589 (1228)
19 PRK11176 lipid transporter ATP 100.0 8.1E-71 1.7E-75 688.8 64.0 504 713-1222 73-579 (582)
20 PRK11160 cysteine/glutathione 100.0 4.4E-70 9.6E-75 677.8 64.1 502 714-1221 69-573 (574)
21 TIGR03375 type_I_sec_LssB type 100.0 4.5E-70 9.7E-75 693.8 64.5 495 711-1210 193-689 (694)
22 TIGR02203 MsbA_lipidA lipid A 100.0 3.2E-69 6.9E-74 673.5 63.6 507 710-1222 59-568 (571)
23 COG4988 CydD ABC-type transpor 100.0 8.5E-69 1.8E-73 624.3 60.1 512 705-1224 40-557 (559)
24 TIGR01846 type_I_sec_HlyB type 100.0 6.8E-69 1.5E-73 682.4 64.7 508 709-1222 183-692 (694)
25 KOG0056 Heavy metal exporter H 100.0 8.1E-71 1.8E-75 612.0 32.5 503 719-1230 273-783 (790)
26 KOG0057 Mitochondrial Fe/S clu 100.0 4.7E-68 1E-72 606.6 54.5 505 705-1221 74-585 (591)
27 COG4987 CydC ABC-type transpor 100.0 4.2E-68 9.2E-73 606.9 53.0 498 716-1220 69-571 (573)
28 TIGR02204 MsbA_rel ABC transpo 100.0 1.8E-67 3.8E-72 658.2 63.7 507 712-1221 65-574 (576)
29 PRK13657 cyclic beta-1,2-gluca 100.0 2.6E-67 5.7E-72 656.8 65.3 489 730-1223 81-571 (588)
30 PRK10789 putative multidrug tr 100.0 3.6E-67 7.8E-72 651.7 64.3 509 709-1223 40-551 (569)
31 TIGR02868 CydC thiol reductant 100.0 1.5E-67 3.3E-72 651.6 59.3 464 715-1181 63-529 (529)
32 TIGR01192 chvA glucan exporter 100.0 5.1E-66 1.1E-70 642.4 64.7 497 723-1225 74-573 (585)
33 TIGR02857 CydD thiol reductant 100.0 9.3E-66 2E-70 635.7 60.9 481 708-1193 47-529 (529)
34 COG5265 ATM1 ABC-type transpor 100.0 7E-67 1.5E-71 578.4 36.4 484 729-1220 6-496 (497)
35 TIGR01842 type_I_sec_PrtD type 100.0 1.3E-63 2.9E-68 617.4 62.2 491 708-1210 49-543 (544)
36 PTZ00265 multidrug resistance 100.0 1.8E-63 3.9E-68 664.2 62.4 512 707-1222 99-728 (1466)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.7E-61 8E-66 595.7 58.6 479 713-1201 61-551 (555)
38 PLN03232 ABC transporter C fam 100.0 1.6E-58 3.4E-63 622.9 62.0 474 730-1223 366-841 (1495)
39 PLN03130 ABC transporter C fam 100.0 7.8E-58 1.7E-62 615.7 64.1 473 730-1223 366-841 (1622)
40 PRK10522 multidrug transporter 100.0 1E-57 2.2E-62 565.0 59.6 464 719-1203 62-532 (547)
41 COG4618 ArpD ABC-type protease 100.0 1.7E-56 3.6E-61 506.5 45.4 479 714-1210 72-561 (580)
42 TIGR00957 MRP_assoc_pro multi 100.0 4.1E-53 8.9E-58 571.2 64.7 475 727-1223 380-863 (1522)
43 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.3E-54 7.2E-59 484.2 27.7 239 984-1224 1-239 (275)
44 KOG0054 Multidrug resistance-a 100.0 4.4E-51 9.6E-56 521.0 58.3 489 716-1223 253-744 (1381)
45 TIGR00954 3a01203 Peroxysomal 100.0 1.3E-51 2.8E-56 517.3 52.6 464 715-1195 149-653 (659)
46 COG1123 ATPase components of v 100.0 3.8E-53 8.1E-58 496.3 25.1 471 626-1222 4-532 (539)
47 TIGR01271 CFTR_protein cystic 100.0 2E-49 4.4E-54 533.8 62.2 481 715-1220 132-646 (1490)
48 PTZ00243 ABC transporter; Prov 100.0 2.5E-48 5.4E-53 523.3 61.1 489 716-1221 296-880 (1560)
49 PRK14257 phosphate ABC transpo 100.0 7.2E-50 1.6E-54 460.4 25.2 229 978-1213 73-317 (329)
50 COG4172 ABC-type uncharacteriz 100.0 1.1E-48 2.5E-53 430.0 30.5 222 985-1217 276-524 (534)
51 PRK10261 glutathione transport 100.0 5E-49 1.1E-53 492.0 31.2 225 985-1220 313-565 (623)
52 PRK15134 microcin C ABC transp 100.0 2.3E-48 4.9E-53 479.7 28.5 217 985-1213 275-519 (529)
53 COG1126 GlnQ ABC-type polar am 100.0 2.1E-48 4.5E-53 400.2 21.1 217 985-1214 2-230 (240)
54 COG1135 AbcC ABC-type metal io 100.0 2.3E-47 4.9E-52 411.6 21.1 227 986-1223 2-246 (339)
55 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-46 3.2E-51 462.9 30.6 219 985-1209 279-517 (520)
56 PRK13549 xylose transporter AT 100.0 1.1E-46 2.3E-51 462.3 23.0 213 985-1208 259-493 (506)
57 PRK09700 D-allose transporter 100.0 1.1E-46 2.4E-51 463.0 21.2 207 985-1206 265-495 (510)
58 PRK15064 ABC transporter ATP-b 100.0 2.9E-45 6.4E-50 452.2 33.6 200 985-1210 319-526 (530)
59 cd03288 ABCC_SUR2 The SUR doma 100.0 2.5E-45 5.5E-50 411.3 29.1 240 982-1221 16-255 (257)
60 PRK10762 D-ribose transporter 100.0 5.3E-46 1.2E-50 455.7 22.9 207 985-1208 257-483 (501)
61 PRK11288 araG L-arabinose tran 100.0 6.4E-46 1.4E-50 455.0 23.5 208 985-1209 257-485 (501)
62 TIGR02633 xylG D-xylose ABC tr 100.0 7.5E-46 1.6E-50 454.8 22.9 213 985-1207 257-490 (500)
63 COG1117 PstB ABC-type phosphat 100.0 7.4E-46 1.6E-50 379.0 18.5 219 985-1212 7-240 (253)
64 PRK15439 autoinducer 2 ABC tra 100.0 9.5E-46 2.1E-50 453.8 22.3 208 985-1210 268-493 (510)
65 PRK11819 putative ABC transpor 100.0 9.8E-44 2.1E-48 440.1 38.7 203 984-1211 323-535 (556)
66 PLN03073 ABC transporter F fam 100.0 1.5E-43 3.3E-48 443.6 40.7 199 984-1207 507-712 (718)
67 PRK10636 putative ABC transpor 100.0 5.8E-44 1.3E-48 446.7 36.5 200 985-1209 312-517 (638)
68 cd03252 ABCC_Hemolysin The ABC 100.0 1.7E-44 3.8E-49 400.2 27.1 234 986-1220 1-235 (237)
69 PRK10938 putative molybdenum t 100.0 2.6E-45 5.5E-50 449.0 21.9 206 985-1203 260-486 (490)
70 COG1125 OpuBA ABC-type proline 100.0 4.7E-45 1E-49 381.7 19.4 217 986-1215 2-231 (309)
71 cd03244 ABCC_MRP_domain2 Domai 100.0 2.9E-44 6.2E-49 394.2 26.5 221 984-1204 1-221 (221)
72 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.7E-43 1.2E-47 433.3 38.5 201 985-1210 322-532 (552)
73 PRK11147 ABC transporter ATPas 100.0 7.7E-43 1.7E-47 437.8 39.2 199 985-1208 319-527 (635)
74 PRK10982 galactose/methyl gala 100.0 1.2E-44 2.7E-49 442.8 21.3 210 985-1208 250-479 (491)
75 COG1124 DppF ABC-type dipeptid 100.0 7.5E-44 1.6E-48 374.5 22.3 227 985-1221 3-243 (252)
76 COG0488 Uup ATPase components 100.0 3.4E-42 7.4E-47 413.2 37.2 202 984-1210 320-526 (530)
77 cd03251 ABCC_MsbA MsbA is an e 100.0 3.6E-43 7.8E-48 388.9 26.7 231 986-1217 1-232 (234)
78 COG1120 FepC ABC-type cobalami 100.0 1.1E-43 2.5E-48 385.3 21.4 213 985-1210 2-229 (258)
79 COG1122 CbiO ABC-type cobalt t 100.0 1.7E-43 3.6E-48 384.8 21.8 215 985-1211 3-230 (235)
80 TIGR02314 ABC_MetN D-methionin 100.0 4.1E-43 8.8E-48 404.9 25.2 224 986-1220 2-242 (343)
81 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.5E-43 1.6E-47 378.9 25.8 207 980-1204 1-207 (207)
82 cd03254 ABCC_Glucan_exporter_l 100.0 8.1E-43 1.8E-47 384.8 26.0 226 984-1210 1-227 (229)
83 cd03253 ABCC_ATM1_transporter 100.0 1.2E-42 2.6E-47 385.3 27.4 233 986-1220 1-234 (236)
84 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-42 2.3E-47 363.5 22.5 224 985-1220 8-246 (263)
85 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.6E-42 5.7E-47 383.0 26.8 233 986-1219 1-235 (238)
86 cd03245 ABCC_bacteriocin_expor 100.0 3.4E-42 7.3E-47 377.5 26.1 219 984-1202 1-220 (220)
87 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.5E-42 3.3E-47 374.4 21.6 209 985-1210 4-228 (254)
88 cd03260 ABC_PstB_phosphate_tra 100.0 3.3E-42 7.2E-47 379.4 22.8 211 986-1207 1-227 (227)
89 cd03261 ABC_Org_Solvent_Resist 100.0 4.1E-42 8.9E-47 380.6 23.1 212 986-1210 1-227 (235)
90 PRK13631 cbiO cobalt transport 100.0 5E-42 1.1E-46 394.3 24.4 216 985-1210 21-266 (320)
91 PRK14250 phosphate ABC transpo 100.0 1.4E-41 2.9E-46 377.7 26.6 222 985-1218 3-230 (241)
92 COG2884 FtsE Predicted ATPase 100.0 2.4E-42 5.1E-47 347.3 18.3 207 986-1204 2-221 (223)
93 TIGR00956 3a01205 Pleiotropic 100.0 2.9E-40 6.3E-45 441.6 44.1 248 945-1206 718-990 (1394)
94 COG3839 MalK ABC-type sugar tr 100.0 5.3E-42 1.2E-46 386.0 23.0 216 985-1215 3-229 (338)
95 COG3638 ABC-type phosphate/pho 100.0 4.1E-42 8.9E-47 358.2 20.4 212 985-1208 3-236 (258)
96 COG1136 SalX ABC-type antimicr 100.0 1.6E-41 3.5E-46 361.6 24.1 205 986-1200 2-222 (226)
97 PRK14269 phosphate ABC transpo 100.0 1.9E-41 4.1E-46 377.8 25.5 219 985-1212 2-233 (246)
98 PRK13650 cbiO cobalt transport 100.0 1.6E-41 3.5E-46 384.6 23.9 215 985-1210 4-230 (279)
99 PRK11650 ugpC glycerol-3-phosp 100.0 2.8E-41 6E-46 392.9 26.0 217 985-1215 3-230 (356)
100 PRK11153 metN DL-methionine tr 100.0 2E-41 4.4E-46 393.6 24.8 220 986-1216 2-237 (343)
101 cd03263 ABC_subfamily_A The AB 100.0 1.8E-41 3.9E-46 371.8 22.4 210 986-1207 1-219 (220)
102 PRK13637 cbiO cobalt transport 100.0 2.2E-41 4.9E-46 384.8 23.9 216 986-1210 3-235 (287)
103 cd03248 ABCC_TAP TAP, the Tran 100.0 3.2E-41 6.9E-46 371.3 23.7 216 983-1198 9-226 (226)
104 TIGR00960 3a0501s02 Type II (G 100.0 1.8E-41 3.9E-46 370.7 21.2 202 986-1198 2-216 (216)
105 PRK10744 pstB phosphate transp 100.0 8E-41 1.7E-45 375.7 26.8 222 983-1213 11-248 (260)
106 PRK11432 fbpC ferric transport 100.0 4E-41 8.6E-46 390.5 24.9 217 984-1215 5-232 (351)
107 PRK13647 cbiO cobalt transport 100.0 3.4E-41 7.3E-46 381.0 23.6 211 985-1207 4-225 (274)
108 cd03256 ABC_PhnC_transporter A 100.0 3.3E-41 7.1E-46 375.0 22.8 212 986-1209 1-234 (241)
109 PRK13643 cbiO cobalt transport 100.0 3.8E-41 8.3E-46 383.1 23.8 215 986-1210 2-234 (288)
110 cd03296 ABC_CysA_sulfate_impor 100.0 6.5E-41 1.4E-45 372.0 24.9 212 986-1212 3-229 (239)
111 PRK14242 phosphate transporter 100.0 7.9E-41 1.7E-45 374.6 25.5 219 985-1212 6-240 (253)
112 PRK13635 cbiO cobalt transport 100.0 5.3E-41 1.1E-45 380.2 24.2 215 985-1210 5-230 (279)
113 PRK13646 cbiO cobalt transport 100.0 5.4E-41 1.2E-45 381.7 24.1 216 985-1210 2-236 (286)
114 TIGR00972 3a0107s01c2 phosphat 100.0 8.5E-41 1.8E-45 372.9 25.3 221 986-1215 2-238 (247)
115 PRK14273 phosphate ABC transpo 100.0 9.1E-41 2E-45 374.2 25.6 222 985-1215 7-244 (254)
116 cd03219 ABC_Mj1267_LivG_branch 100.0 4.3E-41 9.3E-46 372.8 22.7 212 986-1210 1-233 (236)
117 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.7E-41 1.2E-45 373.1 23.1 215 986-1212 1-228 (242)
118 TIGR02315 ABC_phnC phosphonate 100.0 6.1E-41 1.3E-45 373.3 22.9 211 986-1208 2-234 (243)
119 PRK15079 oligopeptide ABC tran 100.0 1.3E-40 2.7E-45 384.1 26.1 223 985-1217 8-259 (331)
120 TIGR03265 PhnT2 putative 2-ami 100.0 6.9E-41 1.5E-45 389.2 24.0 217 985-1216 4-231 (353)
121 cd03258 ABC_MetN_methionine_tr 100.0 6.8E-41 1.5E-45 370.5 22.8 214 986-1210 2-231 (233)
122 TIGR01186 proV glycine betaine 100.0 4.8E-41 1E-45 389.7 22.5 205 1000-1215 6-225 (363)
123 PRK14259 phosphate ABC transpo 100.0 1.9E-40 4E-45 374.2 26.7 221 983-1212 11-256 (269)
124 PRK14267 phosphate ABC transpo 100.0 1.2E-40 2.5E-45 373.2 24.6 219 985-1212 4-240 (253)
125 PRK14235 phosphate transporter 100.0 1.9E-40 4.1E-45 373.9 26.2 222 983-1213 17-255 (267)
126 PRK10851 sulfate/thiosulfate t 100.0 1.4E-40 3.1E-45 386.5 25.8 216 985-1215 2-232 (353)
127 PRK13634 cbiO cobalt transport 100.0 1E-40 2.2E-45 380.0 24.1 215 986-1210 3-236 (290)
128 PRK11308 dppF dipeptide transp 100.0 2E-40 4.3E-45 382.2 26.6 224 985-1218 5-253 (327)
129 PRK14247 phosphate ABC transpo 100.0 1.8E-40 3.8E-45 371.1 25.5 222 985-1215 3-240 (250)
130 cd03259 ABC_Carb_Solutes_like 100.0 6.8E-41 1.5E-45 365.3 21.4 202 986-1202 1-213 (213)
131 PRK13636 cbiO cobalt transport 100.0 1.1E-40 2.4E-45 378.6 23.9 214 985-1210 5-232 (283)
132 PRK13651 cobalt transporter AT 100.0 1.2E-40 2.7E-45 380.6 24.4 215 985-1210 2-255 (305)
133 cd03250 ABCC_MRP_domain1 Domai 100.0 1.6E-40 3.5E-45 359.8 23.8 199 986-1197 1-204 (204)
134 COG3842 PotA ABC-type spermidi 100.0 4.9E-41 1.1E-45 380.2 20.4 217 984-1215 4-232 (352)
135 PRK11629 lolD lipoprotein tran 100.0 1.4E-40 3E-45 367.9 23.6 208 985-1203 5-228 (233)
136 PRK13409 putative ATPase RIL; 100.0 5.7E-41 1.2E-45 413.7 22.8 191 985-1203 340-536 (590)
137 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-40 2.9E-45 365.4 22.9 212 986-1209 1-221 (222)
138 COG1116 TauB ABC-type nitrate/ 100.0 2E-40 4.4E-45 352.5 23.4 219 985-1224 3-239 (248)
139 TIGR03258 PhnT 2-aminoethylpho 100.0 1.4E-40 3.1E-45 386.9 24.2 218 983-1215 3-234 (362)
140 PRK10619 histidine/lysine/argi 100.0 2.4E-40 5.2E-45 371.4 24.9 218 983-1212 3-244 (257)
141 PRK09536 btuD corrinoid ABC tr 100.0 1.7E-40 3.6E-45 389.6 24.6 213 985-1210 3-229 (402)
142 cd03265 ABC_DrrA DrrA is the A 100.0 1.8E-40 3.9E-45 363.8 23.1 208 986-1207 1-219 (220)
143 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.2E-40 2.6E-45 375.7 22.2 217 987-1216 26-257 (269)
144 PRK13632 cbiO cobalt transport 100.0 2.7E-40 5.8E-45 373.5 24.9 215 985-1210 7-232 (271)
145 PRK11831 putative ABC transpor 100.0 3.9E-40 8.4E-45 371.8 26.1 223 985-1220 7-244 (269)
146 cd03266 ABC_NatA_sodium_export 100.0 1.3E-40 2.9E-45 364.4 21.6 205 986-1202 2-218 (218)
147 PRK11000 maltose/maltodextrin 100.0 2E-40 4.3E-45 388.4 24.5 216 985-1215 3-229 (369)
148 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.9E-40 6.4E-45 366.0 24.5 211 986-1210 2-222 (236)
149 PRK14251 phosphate ABC transpo 100.0 2.2E-40 4.8E-45 370.5 23.6 222 985-1215 4-241 (251)
150 PRK14245 phosphate ABC transpo 100.0 2.8E-40 6E-45 369.4 24.3 221 985-1214 3-239 (250)
151 PRK13652 cbiO cobalt transport 100.0 2.7E-40 5.8E-45 374.5 24.3 213 986-1210 4-228 (277)
152 PRK14244 phosphate ABC transpo 100.0 1.6E-40 3.5E-45 371.5 22.1 221 986-1215 6-243 (251)
153 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.3E-40 2.9E-45 364.4 21.0 202 986-1198 1-218 (218)
154 cd03291 ABCC_CFTR1 The CFTR su 100.0 1E-39 2.2E-44 368.2 28.7 216 984-1217 38-254 (282)
155 PRK09452 potA putrescine/sperm 100.0 3.7E-40 8E-45 384.8 25.9 216 985-1215 14-240 (375)
156 PRK14256 phosphate ABC transpo 100.0 5E-40 1.1E-44 367.8 26.0 222 984-1214 3-241 (252)
157 cd03247 ABCC_cytochrome_bd The 100.0 2E-40 4.4E-45 351.1 21.5 178 986-1202 1-178 (178)
158 cd03226 ABC_cobalt_CbiO_domain 100.0 1.9E-40 4.2E-45 359.5 21.8 198 987-1199 1-205 (205)
159 PRK14268 phosphate ABC transpo 100.0 3.6E-40 7.8E-45 370.0 24.8 222 985-1215 12-248 (258)
160 PRK14237 phosphate transporter 100.0 5.3E-40 1.1E-44 370.2 26.2 219 985-1212 20-254 (267)
161 TIGR02769 nickel_nikE nickel i 100.0 4.2E-40 9E-45 370.8 25.3 224 986-1219 3-250 (265)
162 cd03268 ABC_BcrA_bacitracin_re 100.0 2.5E-40 5.4E-45 359.5 22.4 202 986-1202 1-208 (208)
163 PRK13640 cbiO cobalt transport 100.0 4.6E-40 1E-44 373.3 25.5 216 984-1210 4-233 (282)
164 PRK11022 dppD dipeptide transp 100.0 5E-40 1.1E-44 379.0 26.0 226 985-1218 3-252 (326)
165 TIGR03005 ectoine_ehuA ectoine 100.0 3.9E-40 8.5E-45 368.6 24.4 217 986-1215 1-242 (252)
166 PRK14274 phosphate ABC transpo 100.0 6.4E-40 1.4E-44 368.3 25.9 221 985-1214 12-248 (259)
167 cd03264 ABC_drug_resistance_li 100.0 2.2E-40 4.7E-45 360.8 21.4 202 986-1202 1-211 (211)
168 PRK14239 phosphate transporter 100.0 5.9E-40 1.3E-44 367.3 25.3 220 985-1213 5-240 (252)
169 PRK13537 nodulation ABC transp 100.0 3E-40 6.5E-45 378.2 23.3 213 984-1210 6-228 (306)
170 TIGR03411 urea_trans_UrtD urea 100.0 4.1E-40 8.8E-45 366.4 23.6 211 986-1209 3-231 (242)
171 PRK14240 phosphate transporter 100.0 6.2E-40 1.3E-44 366.7 25.2 222 984-1214 2-239 (250)
172 PRK13642 cbiO cobalt transport 100.0 4.5E-40 9.8E-45 372.6 24.3 215 985-1210 4-230 (277)
173 PRK14262 phosphate ABC transpo 100.0 6.9E-40 1.5E-44 366.3 25.4 223 985-1216 3-241 (250)
174 PRK14248 phosphate ABC transpo 100.0 7.7E-40 1.7E-44 369.4 26.0 220 985-1213 21-256 (268)
175 TIGR02211 LolD_lipo_ex lipopro 100.0 4.8E-40 1E-44 360.7 23.6 203 986-1199 2-220 (221)
176 PRK13644 cbiO cobalt transport 100.0 5E-40 1.1E-44 371.5 24.4 213 986-1210 2-225 (274)
177 cd03218 ABC_YhbG The ABC trans 100.0 3.2E-40 7E-45 364.8 22.2 212 986-1210 1-223 (232)
178 PRK13641 cbiO cobalt transport 100.0 6.1E-40 1.3E-44 373.3 24.6 216 985-1210 2-235 (287)
179 PRK11264 putative amino-acid A 100.0 6.8E-40 1.5E-44 366.4 24.6 214 986-1212 4-236 (250)
180 PRK13649 cbiO cobalt transport 100.0 5.5E-40 1.2E-44 373.0 24.1 215 986-1210 3-235 (280)
181 PRK10575 iron-hydroxamate tran 100.0 4.7E-40 1E-44 370.4 23.3 213 985-1210 11-238 (265)
182 PRK14260 phosphate ABC transpo 100.0 7.6E-40 1.6E-44 367.6 24.8 221 984-1213 6-247 (259)
183 PRK14266 phosphate ABC transpo 100.0 7.8E-40 1.7E-44 365.9 24.8 222 985-1215 3-240 (250)
184 PRK11124 artP arginine transpo 100.0 6E-40 1.3E-44 365.0 23.7 212 986-1210 3-231 (242)
185 PRK14254 phosphate ABC transpo 100.0 1.4E-39 2.9E-44 369.6 27.0 219 985-1212 39-272 (285)
186 PRK13648 cbiO cobalt transport 100.0 5.1E-40 1.1E-44 371.0 23.2 215 985-1210 7-232 (269)
187 PRK14270 phosphate ABC transpo 100.0 1.1E-39 2.3E-44 364.9 25.6 219 985-1212 4-238 (251)
188 PRK13633 cobalt transporter AT 100.0 6.8E-40 1.5E-44 371.8 24.3 215 985-1210 4-234 (280)
189 PRK11231 fecE iron-dicitrate t 100.0 5.6E-40 1.2E-44 368.0 23.2 212 986-1210 3-228 (255)
190 PRK14249 phosphate ABC transpo 100.0 1.4E-39 3E-44 364.1 26.0 219 985-1212 4-238 (251)
191 PRK09493 glnQ glutamine ABC tr 100.0 8.6E-40 1.9E-44 363.2 24.1 213 986-1211 2-227 (240)
192 cd03225 ABC_cobalt_CbiO_domain 100.0 3.1E-40 6.8E-45 359.6 20.1 200 987-1197 1-211 (211)
193 cd03292 ABC_FtsE_transporter F 100.0 4.1E-40 9E-45 359.4 21.1 201 986-1198 1-214 (214)
194 PRK14238 phosphate transporter 100.0 2.2E-39 4.8E-44 365.8 27.6 220 985-1213 24-259 (271)
195 cd03301 ABC_MalK_N The N-termi 100.0 4.3E-40 9.3E-45 359.0 21.0 202 986-1202 1-213 (213)
196 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.4E-40 9.6E-45 360.7 21.2 203 986-1204 1-218 (220)
197 TIGR02673 FtsE cell division A 100.0 3.7E-40 7.9E-45 359.8 20.4 200 986-1197 2-214 (214)
198 PRK14236 phosphate transporter 100.0 1.5E-39 3.3E-44 367.5 26.1 221 983-1212 23-259 (272)
199 PRK09473 oppD oligopeptide tra 100.0 1E-39 2.2E-44 376.7 25.2 226 985-1218 12-260 (330)
200 PRK11614 livF leucine/isoleuci 100.0 8.7E-40 1.9E-44 362.5 23.6 213 985-1210 5-227 (237)
201 PRK14243 phosphate transporter 100.0 1.7E-39 3.6E-44 365.6 26.1 220 985-1213 10-252 (264)
202 PRK10070 glycine betaine trans 100.0 8.5E-40 1.8E-44 383.4 24.5 204 1001-1215 42-260 (400)
203 PRK11607 potG putrescine trans 100.0 9.5E-40 2.1E-44 382.1 24.6 217 985-1216 19-246 (377)
204 PRK13548 hmuV hemin importer A 100.0 1.6E-39 3.4E-44 364.5 25.4 212 986-1210 3-231 (258)
205 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-39 2.6E-44 356.8 23.7 210 987-1197 2-218 (218)
206 PRK10253 iron-enterobactin tra 100.0 9.5E-40 2.1E-44 367.9 23.4 214 984-1210 6-234 (265)
207 PRK13645 cbiO cobalt transport 100.0 1.1E-39 2.4E-44 371.8 24.3 218 983-1210 4-241 (289)
208 COG1118 CysA ABC-type sulfate/ 100.0 3.9E-40 8.4E-45 354.5 19.0 215 986-1215 3-233 (345)
209 PRK14252 phosphate ABC transpo 100.0 1.7E-39 3.7E-44 366.0 25.0 222 981-1211 12-251 (265)
210 PRK10895 lipopolysaccharide AB 100.0 1.6E-39 3.4E-44 361.4 24.4 213 985-1210 3-227 (241)
211 TIGR03410 urea_trans_UrtE urea 100.0 1.2E-39 2.6E-44 359.8 23.2 211 986-1208 1-220 (230)
212 PRK14261 phosphate ABC transpo 100.0 2.1E-39 4.6E-44 363.0 25.3 223 985-1216 6-244 (253)
213 PRK13638 cbiO cobalt transport 100.0 1E-39 2.2E-44 368.8 22.8 212 986-1210 2-226 (271)
214 TIGR01288 nodI ATP-binding ABC 100.0 1.2E-39 2.7E-44 373.6 23.7 212 985-1210 4-225 (303)
215 PRK14258 phosphate ABC transpo 100.0 2.1E-39 4.6E-44 364.3 25.2 222 984-1214 6-250 (261)
216 cd03300 ABC_PotA_N PotA is an 100.0 1E-39 2.2E-44 360.7 22.0 211 986-1211 1-222 (232)
217 PRK13639 cbiO cobalt transport 100.0 1.4E-39 3.1E-44 368.2 23.7 213 986-1210 2-227 (275)
218 PRK10584 putative ABC transpor 100.0 1.8E-39 4E-44 357.8 24.0 206 985-1201 6-227 (228)
219 PRK14265 phosphate ABC transpo 100.0 3.1E-39 6.7E-44 365.0 26.4 219 985-1212 20-261 (274)
220 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.5E-39 3.3E-44 354.1 23.0 200 986-1202 1-211 (211)
221 PRK11247 ssuB aliphatic sulfon 100.0 1.9E-39 4.1E-44 362.4 24.3 203 985-1205 12-219 (257)
222 PRK14241 phosphate transporter 100.0 2.2E-39 4.7E-44 363.8 24.8 219 985-1212 4-245 (258)
223 PRK15093 antimicrobial peptide 100.0 2.4E-39 5.2E-44 374.6 25.6 225 985-1217 3-256 (330)
224 PRK15112 antimicrobial peptide 100.0 1.8E-39 3.8E-44 366.0 23.8 227 985-1221 4-252 (267)
225 cd03246 ABCC_Protease_Secretio 100.0 1.3E-39 2.9E-44 343.1 21.4 172 986-1198 1-173 (173)
226 cd03235 ABC_Metallic_Cations A 100.0 7.9E-40 1.7E-44 356.9 20.2 197 987-1202 1-213 (213)
227 PRK14271 phosphate ABC transpo 100.0 3.7E-39 8.1E-44 364.5 26.3 219 985-1212 21-254 (276)
228 COG3840 ThiQ ABC-type thiamine 100.0 1.1E-39 2.4E-44 324.9 19.3 210 986-1212 2-222 (231)
229 PRK14253 phosphate ABC transpo 100.0 3.3E-39 7.2E-44 360.6 25.2 219 985-1212 3-236 (249)
230 PRK14263 phosphate ABC transpo 100.0 3.3E-39 7.1E-44 362.2 25.1 220 985-1213 8-249 (261)
231 PRK14275 phosphate ABC transpo 100.0 3.7E-39 8E-44 366.4 25.8 223 984-1215 38-276 (286)
232 PRK11300 livG leucine/isoleuci 100.0 2.4E-39 5.2E-44 363.0 24.0 213 985-1210 5-244 (255)
233 PRK14255 phosphate ABC transpo 100.0 3.1E-39 6.8E-44 361.4 24.7 222 985-1215 5-242 (252)
234 TIGR03415 ABC_choXWV_ATP choli 100.0 2.3E-39 4.9E-44 377.1 24.2 205 1000-1215 37-260 (382)
235 PRK14272 phosphate ABC transpo 100.0 3.9E-39 8.4E-44 360.7 25.1 222 985-1215 4-242 (252)
236 cd03257 ABC_NikE_OppD_transpor 100.0 3.6E-39 7.9E-44 355.5 24.3 207 986-1202 2-228 (228)
237 PRK10771 thiQ thiamine transpo 100.0 5.1E-39 1.1E-43 355.2 25.5 208 986-1210 2-220 (232)
238 PRK13536 nodulation factor exp 100.0 1.8E-39 4E-44 375.4 22.8 212 985-1210 41-262 (340)
239 TIGR00968 3a0106s01 sulfate AB 100.0 3.5E-39 7.6E-44 357.4 23.9 210 986-1210 1-221 (237)
240 PRK10908 cell division protein 100.0 4.4E-39 9.6E-44 353.3 24.5 203 986-1200 2-217 (222)
241 TIGR03873 F420-0_ABC_ATP propo 100.0 2.6E-39 5.7E-44 362.7 23.2 211 986-1209 2-226 (256)
242 TIGR03522 GldA_ABC_ATP gliding 100.0 2.8E-39 6E-44 370.2 23.7 211 986-1210 3-222 (301)
243 cd03269 ABC_putative_ATPase Th 100.0 1.5E-39 3.2E-44 354.0 20.4 200 986-1202 1-210 (210)
244 cd03299 ABC_ModC_like Archeal 100.0 3.1E-39 6.7E-44 357.4 23.2 210 986-1211 1-221 (235)
245 PRK14264 phosphate ABC transpo 100.0 4.3E-39 9.3E-44 369.0 25.1 220 983-1211 43-291 (305)
246 PRK11701 phnK phosphonate C-P 100.0 9.6E-39 2.1E-43 358.6 26.5 221 985-1217 6-249 (258)
247 COG0444 DppD ABC-type dipeptid 100.0 3.2E-39 6.9E-44 354.8 21.8 227 986-1220 2-254 (316)
248 PRK10247 putative ABC transpor 100.0 3.5E-39 7.5E-44 354.6 22.1 209 985-1205 7-223 (225)
249 TIGR01277 thiQ thiamine ABC tr 100.0 4.4E-39 9.6E-44 350.9 22.7 200 987-1203 2-212 (213)
250 PRK10418 nikD nickel transport 100.0 8.7E-39 1.9E-43 358.0 25.6 224 985-1221 4-243 (254)
251 cd03262 ABC_HisP_GlnQ_permease 100.0 2.5E-39 5.5E-44 353.0 20.3 200 986-1198 1-213 (213)
252 PRK14246 phosphate ABC transpo 100.0 9.3E-39 2E-43 357.8 24.9 223 985-1216 10-248 (257)
253 COG4615 PvdE ABC-type sideroph 100.0 8.2E-37 1.8E-41 335.2 39.0 459 719-1202 62-530 (546)
254 PRK11144 modC molybdate transp 100.0 8.2E-39 1.8E-43 373.1 24.9 213 986-1214 2-223 (352)
255 TIGR01188 drrA daunorubicin re 100.0 4.1E-39 9E-44 369.1 21.9 203 994-1210 2-214 (302)
256 TIGR01978 sufC FeS assembly AT 100.0 6.3E-39 1.4E-43 357.1 22.4 211 986-1208 1-233 (243)
257 COG1131 CcmA ABC-type multidru 100.0 5.1E-39 1.1E-43 364.6 21.9 213 985-1210 4-227 (293)
258 PRK13547 hmuV hemin importer A 100.0 1.1E-38 2.4E-43 359.3 24.0 211 986-1209 2-244 (272)
259 PRK09984 phosphonate/organopho 100.0 1.4E-38 3.1E-43 358.0 24.6 222 985-1222 4-252 (262)
260 PRK11248 tauB taurine transpor 100.0 1.4E-38 3E-43 356.0 22.4 201 986-1204 2-215 (255)
261 COG4178 ABC-type uncharacteriz 100.0 1.2E-35 2.6E-40 353.2 48.4 465 706-1194 87-587 (604)
262 PRK10419 nikE nickel transport 100.0 3.2E-38 7E-43 355.8 24.7 221 986-1217 4-248 (268)
263 TIGR03740 galliderm_ABC gallid 100.0 4.6E-38 1E-42 345.4 24.7 204 986-1206 1-210 (223)
264 COG0410 LivF ABC-type branched 100.0 2.2E-38 4.8E-43 331.2 20.8 215 986-1212 4-229 (237)
265 cd03228 ABCC_MRP_Like The MRP 100.0 3E-38 6.5E-43 332.2 21.1 171 986-1197 1-171 (171)
266 TIGR02323 CP_lyasePhnK phospho 100.0 6.3E-38 1.4E-42 351.1 24.9 221 985-1217 3-246 (253)
267 TIGR02982 heterocyst_DevA ABC 100.0 2E-38 4.4E-43 347.5 20.5 202 986-1198 2-219 (220)
268 TIGR02142 modC_ABC molybdenum 100.0 2.8E-38 6.1E-43 369.2 23.0 211 990-1215 4-227 (354)
269 cd03230 ABC_DR_subfamily_A Thi 100.0 4.5E-38 9.7E-43 331.5 20.5 170 986-1198 1-173 (173)
270 cd03229 ABC_Class3 This class 100.0 6.2E-38 1.3E-42 332.0 21.1 172 986-1197 1-178 (178)
271 PRK15056 manganese/iron transp 100.0 7.9E-38 1.7E-42 353.6 23.3 208 985-1209 6-230 (272)
272 PRK09544 znuC high-affinity zi 100.0 1.1E-37 2.5E-42 347.4 23.6 208 985-1219 4-217 (251)
273 COG1123 ATPase components of v 100.0 8.4E-38 1.8E-42 367.2 22.8 227 985-1220 5-255 (539)
274 cd03234 ABCG_White The White s 100.0 9.8E-38 2.1E-42 343.5 21.9 203 986-1202 4-226 (226)
275 cd03297 ABC_ModC_molybdenum_tr 100.0 9.4E-38 2E-42 340.8 21.3 197 990-1202 5-214 (214)
276 COG4555 NatA ABC-type Na+ tran 100.0 6.3E-38 1.4E-42 317.7 17.7 212 986-1210 2-223 (245)
277 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.8E-37 4E-42 334.6 22.2 185 986-1208 1-192 (200)
278 cd03233 ABC_PDR_domain1 The pl 100.0 1.9E-37 4.1E-42 334.9 21.3 190 985-1202 3-202 (202)
279 CHL00131 ycf16 sulfate ABC tra 100.0 3.2E-37 7E-42 345.3 23.6 210 985-1207 7-239 (252)
280 TIGR02770 nickel_nikD nickel i 100.0 2.3E-37 4.9E-42 341.5 21.9 206 1002-1217 1-223 (230)
281 cd03213 ABCG_EPDR ABCG transpo 100.0 1.7E-37 3.7E-42 333.1 20.3 182 985-1202 3-194 (194)
282 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-37 2.3E-42 338.4 18.8 193 988-1193 1-206 (206)
283 cd03214 ABC_Iron-Siderophores_ 100.0 1.6E-37 3.5E-42 329.4 19.5 177 987-1202 1-180 (180)
284 cd03215 ABC_Carb_Monos_II This 100.0 1.8E-37 4E-42 329.6 19.3 172 985-1198 4-182 (182)
285 COG0411 LivG ABC-type branched 100.0 6.2E-38 1.3E-42 330.4 15.3 214 986-1212 5-242 (250)
286 cd03223 ABCD_peroxisomal_ALDP 100.0 3.3E-37 7.2E-42 322.3 20.5 164 986-1197 1-164 (166)
287 PRK03695 vitamin B12-transport 100.0 4.5E-37 9.8E-42 342.7 22.8 206 987-1210 2-223 (248)
288 COG1137 YhbG ABC-type (unclass 100.0 1.9E-38 4.1E-43 321.1 10.4 216 984-1212 3-231 (243)
289 COG4608 AppF ABC-type oligopep 100.0 3.7E-37 8.1E-42 331.8 20.7 198 985-1221 4-211 (268)
290 cd03232 ABC_PDR_domain2 The pl 100.0 3.3E-37 7.1E-42 330.4 19.3 181 985-1202 3-192 (192)
291 PRK09580 sufC cysteine desulfu 100.0 1.3E-36 2.8E-41 339.6 24.8 210 986-1207 2-233 (248)
292 TIGR01184 ntrCD nitrate transp 100.0 5E-37 1.1E-41 338.5 20.4 190 1003-1208 1-203 (230)
293 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-36 2.9E-41 372.9 25.9 213 985-1210 11-230 (510)
294 COG4598 HisP ABC-type histidin 100.0 1.3E-37 2.8E-42 308.6 13.4 217 985-1214 6-246 (256)
295 cd03267 ABC_NatA_like Similar 100.0 6.6E-37 1.4E-41 338.9 20.6 191 1000-1202 34-236 (236)
296 PRK13549 xylose transporter AT 100.0 9.4E-37 2E-41 374.5 23.9 212 985-1209 5-232 (506)
297 cd03231 ABC_CcmA_heme_exporter 100.0 1.3E-36 2.7E-41 328.4 21.8 194 986-1193 1-198 (201)
298 PRK13538 cytochrome c biogenes 100.0 1.1E-36 2.4E-41 329.8 20.8 194 986-1193 2-202 (204)
299 PRK09700 D-allose transporter 100.0 9E-37 2E-41 375.3 22.8 212 985-1209 5-234 (510)
300 PRK10762 D-ribose transporter 100.0 1.4E-36 3.1E-41 372.4 23.7 212 985-1209 4-230 (501)
301 PRK10261 glutathione transport 100.0 9.9E-37 2.2E-41 381.5 22.3 223 985-1215 12-264 (623)
302 cd03216 ABC_Carb_Monos_I This 100.0 3.7E-36 8E-41 313.5 22.0 159 986-1200 1-162 (163)
303 COG4175 ProV ABC-type proline/ 100.0 1.7E-36 3.7E-41 326.1 19.5 203 1002-1215 43-260 (386)
304 PRK10938 putative molybdenum t 100.0 2.2E-36 4.7E-41 370.3 23.2 211 986-1210 4-225 (490)
305 PRK15134 microcin C ABC transp 100.0 4.1E-36 8.9E-41 370.8 25.8 220 985-1212 5-249 (529)
306 COG4619 ABC-type uncharacteriz 100.0 8.8E-37 1.9E-41 300.0 15.6 199 993-1201 9-215 (223)
307 COG4559 ABC-type hemin transpo 100.0 2.6E-36 5.7E-41 308.2 19.5 213 986-1211 2-232 (259)
308 PRK13543 cytochrome c biogenes 100.0 6.7E-36 1.4E-40 326.0 22.6 195 985-1195 11-212 (214)
309 PRK13540 cytochrome c biogenes 100.0 5E-36 1.1E-40 323.6 20.5 192 986-1191 2-197 (200)
310 TIGR02324 CP_lyasePhnL phospho 100.0 6.4E-36 1.4E-40 328.8 20.9 198 986-1193 2-222 (224)
311 TIGR02633 xylG D-xylose ABC tr 100.0 7.2E-36 1.6E-40 366.6 23.7 211 986-1208 2-229 (500)
312 PRK11288 araG L-arabinose tran 100.0 8E-36 1.7E-40 365.9 24.1 207 985-1204 4-224 (501)
313 KOG0058 Peptide exporter, ABC 100.0 3E-33 6.5E-38 332.4 44.2 380 303-689 140-527 (716)
314 PRK10982 galactose/methyl gala 100.0 7.9E-36 1.7E-40 365.3 23.1 208 988-1208 1-222 (491)
315 COG4181 Predicted ABC-type tra 100.0 5.4E-36 1.2E-40 295.4 17.3 206 985-1201 6-227 (228)
316 PRK13539 cytochrome c biogenes 100.0 1.3E-35 2.8E-40 322.1 21.4 193 986-1195 3-200 (207)
317 TIGR01189 ccmA heme ABC export 100.0 1.2E-35 2.7E-40 320.1 20.7 192 986-1192 1-197 (198)
318 PRK11174 cysteine/glutathione 100.0 1.9E-32 4.1E-37 343.3 52.2 381 299-688 11-407 (588)
319 COG1129 MglA ABC-type sugar tr 100.0 8.7E-36 1.9E-40 348.2 20.2 465 625-1204 6-485 (500)
320 TIGR03771 anch_rpt_ABC anchore 100.0 1.2E-35 2.6E-40 326.0 18.8 186 1008-1210 1-202 (223)
321 TIGR01257 rim_protein retinal- 100.0 2.1E-35 4.7E-40 393.1 24.4 215 985-1211 928-1151(2272)
322 TIGR03269 met_CoM_red_A2 methy 100.0 2.1E-35 4.4E-40 364.1 21.8 212 986-1210 1-259 (520)
323 TIGR01166 cbiO cobalt transpor 100.0 1.3E-35 2.9E-40 317.7 17.4 173 1000-1183 5-189 (190)
324 PRK13546 teichoic acids export 100.0 6.2E-35 1.3E-39 327.1 23.2 212 985-1220 4-243 (264)
325 PRK10535 macrolide transporter 100.0 5.3E-35 1.1E-39 367.1 24.0 213 985-1208 4-231 (648)
326 PLN03211 ABC transporter G-25; 100.0 9.2E-35 2E-39 363.0 25.8 199 1000-1209 81-296 (659)
327 PRK13541 cytochrome c biogenes 100.0 3.9E-35 8.5E-40 315.3 18.9 188 986-1191 2-193 (195)
328 KOG0927 Predicted transporter 100.0 4.3E-35 9.3E-40 334.6 19.2 195 985-1203 389-589 (614)
329 TIGR03375 type_I_sec_LssB type 100.0 1.8E-31 3.9E-36 340.1 54.2 385 299-689 136-524 (694)
330 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8E-35 1.7E-39 319.6 20.0 193 986-1202 23-224 (224)
331 PRK13545 tagH teichoic acids e 100.0 2E-34 4.4E-39 340.1 24.6 202 985-1210 21-233 (549)
332 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.8E-31 3.9E-36 341.2 53.6 386 300-689 144-538 (710)
333 TIGR02868 CydC thiol reductant 100.0 2E-31 4.4E-36 329.9 52.2 381 304-688 7-393 (529)
334 PRK15064 ABC transporter ATP-b 100.0 1.8E-34 4E-39 356.2 24.7 201 986-1211 2-244 (530)
335 TIGR00958 3a01208 Conjugate Tr 100.0 2.4E-31 5.2E-36 338.5 53.7 379 305-689 156-540 (711)
336 TIGR01257 rim_protein retinal- 100.0 1.9E-34 4.1E-39 384.1 25.0 215 984-1210 1936-2160(2272)
337 TIGR01187 potA spermidine/putr 100.0 1.7E-34 3.7E-39 333.5 19.3 185 1018-1215 1-196 (325)
338 COG4167 SapF ABC-type antimicr 100.0 2.6E-34 5.7E-39 285.6 17.4 226 986-1221 5-252 (267)
339 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.1E-31 1.5E-35 334.3 53.6 384 299-689 125-512 (686)
340 COG1129 MglA ABC-type sugar tr 100.0 7.2E-34 1.6E-38 332.2 23.3 206 985-1203 8-228 (500)
341 TIGR00955 3a01204 The Eye Pigm 100.0 3.2E-34 6.9E-39 358.6 19.8 200 999-1208 37-255 (617)
342 PRK11819 putative ABC transpor 100.0 9.3E-34 2E-38 351.2 23.7 211 985-1210 6-251 (556)
343 TIGR02857 CydD thiol reductant 100.0 1.4E-30 3E-35 322.5 51.3 374 309-688 2-380 (529)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-33 2.6E-38 350.2 23.6 211 985-1210 4-249 (552)
345 cd03237 ABC_RNaseL_inhibitor_d 100.0 9.3E-34 2E-38 314.6 20.0 193 993-1209 1-207 (246)
346 TIGR01193 bacteriocin_ABC ABC- 100.0 2.8E-30 6.1E-35 329.9 54.2 380 302-689 148-533 (708)
347 COG4161 ArtP ABC-type arginine 100.0 6.1E-34 1.3E-38 277.6 15.5 219 985-1216 2-237 (242)
348 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.8E-33 4E-38 286.8 19.4 143 986-1197 1-144 (144)
349 COG4172 ABC-type uncharacteriz 100.0 1.6E-33 3.5E-38 310.7 20.2 231 985-1223 6-261 (534)
350 TIGR02204 MsbA_rel ABC transpo 100.0 3.5E-30 7.6E-35 322.3 53.0 387 300-688 8-398 (576)
351 cd03236 ABC_RNaseL_inhibitor_d 100.0 6.9E-34 1.5E-38 316.9 16.8 203 989-1207 4-228 (255)
352 TIGR02203 MsbA_lipidA lipid A 100.0 5.1E-30 1.1E-34 320.7 53.5 383 302-689 6-391 (571)
353 COG4604 CeuD ABC-type enteroch 100.0 4.3E-34 9.3E-39 288.5 13.1 218 986-1218 2-232 (252)
354 PRK10789 putative multidrug tr 100.0 3.2E-30 6.9E-35 321.0 49.9 365 320-688 5-373 (569)
355 COG2274 SunT ABC-type bacterio 100.0 1.2E-29 2.7E-34 314.3 53.9 385 297-689 141-532 (709)
356 TIGR01842 type_I_sec_PrtD type 100.0 4.1E-30 8.9E-35 318.8 49.8 370 307-688 3-376 (544)
357 PRK11176 lipid transporter ATP 100.0 1.5E-29 3.2E-34 317.0 53.4 382 303-689 18-402 (582)
358 COG3845 ABC-type uncharacteriz 100.0 1.4E-33 3E-38 322.1 15.1 213 984-1206 256-489 (501)
359 COG3845 ABC-type uncharacteriz 100.0 8.9E-33 1.9E-37 315.5 21.0 206 985-1203 4-223 (501)
360 PRK15177 Vi polysaccharide exp 100.0 5.1E-33 1.1E-37 302.6 18.3 183 1002-1208 2-191 (213)
361 TIGR01846 type_I_sec_HlyB type 100.0 3.7E-29 8.1E-34 318.7 54.0 387 298-689 127-516 (694)
362 KOG0060 Long-chain acyl-CoA tr 100.0 2.4E-30 5.2E-35 297.9 36.8 209 977-1196 425-642 (659)
363 COG4148 ModC ABC-type molybdat 100.0 1.6E-32 3.4E-37 290.7 16.5 196 1005-1211 16-220 (352)
364 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5.5E-32 1.2E-36 280.7 19.7 154 988-1197 2-157 (157)
365 PRK10636 putative ABC transpor 100.0 7.5E-32 1.6E-36 337.8 24.7 199 986-1209 2-236 (638)
366 TIGR01192 chvA glucan exporter 100.0 1.5E-28 3.3E-33 306.5 53.9 375 304-688 13-393 (585)
367 COG4525 TauB ABC-type taurine 100.0 3.3E-32 7.2E-37 274.2 16.4 203 986-1204 4-219 (259)
368 cd03222 ABC_RNaseL_inhibitor T 100.0 3.7E-32 8.1E-37 285.0 17.6 155 989-1209 4-163 (177)
369 COG1101 PhnK ABC-type uncharac 100.0 2.3E-32 5E-37 280.0 14.9 203 997-1201 16-230 (263)
370 PRK11160 cysteine/glutathione 100.0 1.9E-28 4.1E-33 305.3 52.3 381 304-689 10-399 (574)
371 PRK10790 putative multidrug tr 100.0 3.1E-28 6.7E-33 305.4 54.7 377 303-688 16-399 (592)
372 cd03238 ABC_UvrA The excision 100.0 1E-31 2.2E-36 281.5 18.7 160 1000-1202 8-176 (176)
373 PRK13657 cyclic beta-1,2-gluca 100.0 4.6E-28 1E-32 303.4 53.9 375 304-688 13-393 (588)
374 KOG0062 ATPase component of AB 100.0 1.2E-30 2.5E-35 297.0 24.9 193 984-1200 361-559 (582)
375 PRK11147 ABC transporter ATPas 100.0 6E-31 1.3E-35 330.5 24.8 198 985-1210 3-244 (635)
376 COG0488 Uup ATPase components 100.0 5.4E-31 1.2E-35 316.7 21.5 209 985-1209 3-240 (530)
377 COG1119 ModF ABC-type molybden 100.0 6.5E-31 1.4E-35 277.1 19.3 206 985-1203 31-256 (257)
378 COG4674 Uncharacterized ABC-ty 100.0 2.7E-31 5.8E-36 267.9 15.6 215 985-1212 5-238 (249)
379 PLN03140 ABC transporter G fam 100.0 1.2E-30 2.6E-35 347.8 25.1 211 985-1205 867-1106(1470)
380 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.8E-27 3.9E-32 295.3 51.0 374 304-688 11-400 (555)
381 PRK13409 putative ATPase RIL; 100.0 3.4E-31 7.3E-36 327.1 14.4 192 990-1196 78-287 (590)
382 COG0396 sufC Cysteine desulfur 100.0 1.6E-29 3.5E-34 263.2 22.9 214 985-1209 3-233 (251)
383 TIGR00956 3a01205 Pleiotropic 100.0 2.5E-30 5.5E-35 346.4 19.6 200 1000-1207 74-298 (1394)
384 PRK10522 multidrug transporter 100.0 1.4E-26 3E-31 287.3 50.8 369 300-688 3-381 (547)
385 PLN03073 ABC transporter F fam 100.0 1.3E-29 2.7E-34 318.4 20.5 221 984-1208 176-430 (718)
386 PF00005 ABC_tran: ABC transpo 100.0 3.5E-30 7.5E-35 260.7 11.9 136 1003-1151 1-137 (137)
387 PLN03140 ABC transporter G fam 100.0 7.1E-30 1.5E-34 340.5 17.5 199 1000-1208 178-426 (1470)
388 COG1134 TagH ABC-type polysacc 100.0 4.9E-29 1.1E-33 263.6 19.8 187 1000-1210 40-237 (249)
389 COG4152 ABC-type uncharacteriz 100.0 6.6E-30 1.4E-34 266.5 12.7 208 985-1209 2-219 (300)
390 COG1132 MdlB ABC-type multidru 100.0 1.2E-25 2.7E-30 280.3 52.5 372 308-689 13-388 (567)
391 COG4107 PhnK ABC-type phosphon 100.0 1E-28 2.2E-33 244.0 16.5 225 985-1221 6-253 (258)
392 COG4136 ABC-type uncharacteriz 100.0 9.1E-29 2E-33 239.0 15.3 194 985-1193 2-207 (213)
393 COG4586 ABC-type uncharacteriz 100.0 4.4E-28 9.6E-33 256.9 15.1 203 1000-1210 37-247 (325)
394 cd03270 ABC_UvrA_I The excisio 100.0 7.7E-28 1.7E-32 264.3 17.2 188 1000-1202 8-226 (226)
395 TIGR00954 3a01203 Peroxysomal 100.0 2.6E-25 5.7E-30 279.9 42.4 371 311-688 97-510 (659)
396 KOG0061 Transporter, ABC super 99.9 3.1E-27 6.7E-32 292.4 20.0 215 985-1209 25-260 (613)
397 COG4988 CydD ABC-type transpor 99.9 1E-23 2.3E-28 247.3 47.7 367 314-688 4-379 (559)
398 cd03278 ABC_SMC_barmotin Barmo 99.9 1.5E-27 3.2E-32 256.1 14.2 163 1004-1194 14-189 (197)
399 KOG0066 eIF2-interacting prote 99.9 5.1E-26 1.1E-30 251.5 23.4 193 985-1201 586-782 (807)
400 COG4133 CcmA ABC-type transpor 99.9 1E-26 2.3E-31 234.9 13.9 186 986-1185 3-194 (209)
401 cd03271 ABC_UvrA_II The excisi 99.9 2E-26 4.4E-31 255.6 16.2 194 1001-1204 9-261 (261)
402 COG4778 PhnL ABC-type phosphon 99.9 7.9E-27 1.7E-31 230.2 10.6 199 986-1194 5-226 (235)
403 KOG0064 Peroxisomal long-chain 99.9 8.2E-24 1.8E-28 240.2 33.4 193 985-1193 481-681 (728)
404 COG4987 CydC ABC-type transpor 99.9 6.1E-22 1.3E-26 228.4 46.7 384 300-689 7-397 (573)
405 COG1245 Predicted ATPase, RNas 99.9 1.3E-24 2.8E-29 243.8 23.2 175 1009-1208 363-546 (591)
406 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.1E-25 6.8E-30 247.1 16.6 192 985-1194 3-234 (243)
407 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.8E-25 3.8E-30 243.7 13.6 191 985-1198 5-211 (213)
408 KOG0065 Pleiotropic drug resis 99.9 3.2E-24 6.9E-29 268.5 24.1 199 998-1206 802-1018(1391)
409 KOG0057 Mitochondrial Fe/S clu 99.9 1.3E-21 2.9E-26 225.8 43.0 358 323-689 43-410 (591)
410 KOG0056 Heavy metal exporter H 99.9 7.8E-23 1.7E-27 229.7 30.8 362 316-688 221-596 (790)
411 KOG0059 Lipid exporter ABCA1 a 99.9 1.1E-24 2.5E-29 281.0 15.2 213 985-1209 564-787 (885)
412 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.3E-23 2.8E-28 235.0 15.6 181 1013-1194 25-242 (251)
413 cd03240 ABC_Rad50 The catalyti 99.9 1.2E-23 2.6E-28 227.2 13.5 162 1007-1195 17-197 (204)
414 cd03274 ABC_SMC4_euk Eukaryoti 99.9 7.1E-24 1.5E-28 230.1 10.7 180 985-1194 5-203 (212)
415 PRK00349 uvrA excinuclease ABC 99.9 5.4E-23 1.2E-27 261.8 20.4 111 1111-1221 818-939 (943)
416 COG4138 BtuD ABC-type cobalami 99.9 3.3E-24 7.1E-29 212.6 6.4 207 986-1210 4-222 (248)
417 COG4618 ArpD ABC-type protease 99.9 7.1E-20 1.5E-24 209.4 41.1 377 298-688 11-394 (580)
418 PRK00635 excinuclease ABC subu 99.9 8E-22 1.7E-26 260.2 20.7 208 985-1210 600-907 (1809)
419 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.1E-22 6.6E-27 223.2 13.6 181 1015-1195 24-233 (247)
420 COG4170 SapD ABC-type antimicr 99.9 3.5E-22 7.6E-27 203.2 11.5 225 986-1219 4-258 (330)
421 TIGR00630 uvra excinuclease AB 99.9 2.9E-21 6.2E-26 245.7 21.3 97 1111-1207 816-923 (924)
422 COG4615 PvdE ABC-type sideroph 99.9 1.8E-18 3.9E-23 191.4 40.1 370 302-688 5-381 (546)
423 KOG0062 ATPase component of AB 99.9 4.6E-22 9.9E-27 227.3 10.6 184 984-1198 79-273 (582)
424 PF00664 ABC_membrane: ABC tra 99.9 1.6E-18 3.5E-23 193.5 39.1 269 313-581 2-275 (275)
425 KOG0927 Predicted transporter 99.9 2.4E-21 5.1E-26 222.6 15.4 217 981-1209 71-309 (614)
426 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.6E-21 5.6E-26 208.0 12.5 168 1003-1197 12-192 (198)
427 KOG2355 Predicted ABC-type tra 99.8 1.1E-17 2.3E-22 170.6 17.4 215 983-1207 11-238 (291)
428 cd03239 ABC_SMC_head The struc 99.8 4E-18 8.6E-23 180.0 13.8 74 1122-1195 94-172 (178)
429 COG5265 ATM1 ABC-type transpor 99.8 2.9E-16 6.4E-21 176.3 27.7 300 387-690 18-323 (497)
430 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.6E-18 5.7E-23 185.5 11.0 144 1003-1201 17-171 (200)
431 cd03241 ABC_RecN RecN ATPase i 99.8 3.7E-18 8.1E-23 193.4 12.4 76 1122-1197 170-249 (276)
432 COG2401 ABC-type ATPase fused 99.7 2.7E-17 5.8E-22 183.1 14.7 178 1001-1200 397-589 (593)
433 COG0178 UvrA Excinuclease ATPa 99.7 7.4E-17 1.6E-21 193.4 19.5 112 1111-1222 810-932 (935)
434 KOG0065 Pleiotropic drug resis 99.7 2.5E-17 5.5E-22 207.2 14.0 200 1000-1209 128-351 (1391)
435 cd03277 ABC_SMC5_euk Eukaryoti 99.7 3.4E-17 7.5E-22 177.9 12.4 81 1117-1197 121-211 (213)
436 COG1245 Predicted ATPase, RNas 99.7 8.2E-17 1.8E-21 181.6 11.4 187 990-1194 79-287 (591)
437 cd01128 rho_factor Transcripti 99.7 6.2E-17 1.3E-21 178.8 9.8 193 1008-1218 11-225 (249)
438 cd03227 ABC_Class2 ABC-type Cl 99.7 1.4E-16 3.1E-21 166.0 11.8 135 1007-1195 15-155 (162)
439 PRK00635 excinuclease ABC subu 99.7 2.3E-16 4.9E-21 209.2 16.0 214 1002-1215 1505-1802(1809)
440 cd03285 ABC_MSH2_euk MutS2 hom 99.6 4.2E-16 9E-21 170.5 9.5 152 1000-1203 17-175 (222)
441 COG4178 ABC-type uncharacteriz 99.6 1.5E-12 3.3E-17 156.6 39.1 309 371-688 106-451 (604)
442 cd03242 ABC_RecF RecF is a rec 99.6 2.3E-15 5E-20 170.2 12.5 188 1003-1198 12-269 (270)
443 cd03243 ABC_MutS_homologs The 99.6 1.2E-15 2.6E-20 165.0 8.1 153 1006-1207 22-177 (202)
444 KOG0060 Long-chain acyl-CoA tr 99.6 2.2E-12 4.8E-17 150.5 31.0 319 365-688 136-493 (659)
445 cd03283 ABC_MutS-like MutS-lik 99.5 2.4E-14 5.2E-19 154.0 10.8 135 1000-1187 14-154 (199)
446 TIGR00630 uvra excinuclease AB 99.5 2.5E-14 5.3E-19 182.9 11.7 102 1111-1212 475-586 (924)
447 TIGR02858 spore_III_AA stage I 99.5 5.5E-14 1.2E-18 157.1 13.1 142 1014-1208 112-268 (270)
448 PRK14257 phosphate ABC transpo 99.5 1.4E-14 3.1E-19 167.6 8.4 119 559-688 22-145 (329)
449 PRK00349 uvrA excinuclease ABC 99.5 2.4E-14 5.1E-19 183.4 11.0 101 1111-1211 477-587 (943)
450 cd00820 PEPCK_HprK Phosphoenol 99.5 1.3E-14 2.9E-19 137.7 6.3 75 1001-1083 3-77 (107)
451 PF00664 ABC_membrane: ABC tra 99.5 6.6E-12 1.4E-16 140.1 28.8 219 718-936 54-274 (275)
452 KOG0066 eIF2-interacting prote 99.5 4.6E-14 1E-18 157.4 6.7 206 985-1202 264-491 (807)
453 COG1120 FepC ABC-type cobalami 99.4 2.1E-13 4.5E-18 149.4 8.0 59 627-688 2-60 (258)
454 cd03282 ABC_MSH4_euk MutS4 hom 99.4 6.8E-13 1.5E-17 143.1 11.3 138 1000-1186 16-156 (204)
455 cd03284 ABC_MutS1 MutS1 homolo 99.4 3.9E-13 8.4E-18 146.6 8.8 151 1000-1207 18-179 (216)
456 KOG0063 RNAse L inhibitor, ABC 99.4 1.2E-12 2.5E-17 147.0 11.2 195 993-1209 343-548 (592)
457 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 3.3E-13 7.1E-18 147.0 6.2 179 626-839 3-191 (254)
458 TIGR00606 rad50 rad50. This fa 99.4 1.9E-12 4E-17 175.4 14.1 134 1072-1209 1153-1308(1311)
459 PF02463 SMC_N: RecF/RecN/SMC 99.4 4.5E-12 9.8E-17 139.1 14.3 171 1005-1193 17-211 (220)
460 PRK00064 recF recombination pr 99.4 8.5E-12 1.8E-16 146.6 17.3 76 1121-1198 272-359 (361)
461 COG3638 ABC-type phosphate/pho 99.3 6.9E-12 1.5E-16 132.5 10.4 63 626-690 2-64 (258)
462 COG1116 TauB ABC-type nitrate/ 99.3 2.2E-12 4.7E-17 138.7 5.5 59 627-688 3-61 (248)
463 COG3842 PotA ABC-type spermidi 99.3 3.1E-12 6.8E-17 146.2 6.3 206 625-861 3-211 (352)
464 COG1126 GlnQ ABC-type polar am 99.3 3.8E-12 8.1E-17 132.9 6.3 60 627-689 2-61 (240)
465 COG1125 OpuBA ABC-type proline 99.3 2.4E-12 5.1E-17 136.8 4.7 203 627-861 1-210 (309)
466 COG3839 MalK ABC-type sugar tr 99.3 5.9E-12 1.3E-16 143.2 7.4 199 627-861 3-208 (338)
467 PHA02562 46 endonuclease subun 99.3 5.6E-12 1.2E-16 158.0 7.7 106 1091-1198 432-555 (562)
468 cd03281 ABC_MSH5_euk MutS5 hom 99.2 4.6E-11 1E-15 130.0 12.6 133 1002-1187 18-160 (213)
469 COG1124 DppF ABC-type dipeptid 99.2 2.4E-11 5.2E-16 129.5 9.5 63 626-688 2-65 (252)
470 smart00534 MUTSac ATPase domai 99.2 1.4E-11 3E-16 131.4 7.2 68 1119-1189 58-130 (185)
471 PRK07721 fliI flagellum-specif 99.1 3.7E-10 8.1E-15 134.3 15.3 175 1001-1206 147-340 (438)
472 COG1127 Ttg2A ABC-type transpo 99.1 4E-11 8.7E-16 127.2 6.1 61 625-688 6-66 (263)
473 COG2884 FtsE Predicted ATPase 99.1 2.2E-11 4.7E-16 124.4 3.9 60 627-688 1-60 (223)
474 TIGR01069 mutS2 MutS2 family p 99.1 6.7E-11 1.5E-15 150.3 8.6 145 984-1184 294-448 (771)
475 cd03216 ABC_Carb_Monos_I This 99.1 7.1E-11 1.5E-15 123.3 6.5 58 628-688 1-58 (163)
476 COG0444 DppD ABC-type dipeptid 99.1 6.9E-11 1.5E-15 131.5 6.7 55 628-682 2-57 (316)
477 PRK11629 lolD lipoprotein tran 99.1 8.6E-11 1.9E-15 130.2 7.5 63 626-688 4-67 (233)
478 PRK13695 putative NTPase; Prov 99.1 7.2E-11 1.6E-15 124.7 6.4 79 1121-1202 77-157 (174)
479 TIGR00634 recN DNA repair prot 99.1 1.3E-10 2.9E-15 144.5 9.6 77 1121-1197 439-519 (563)
480 PRK13631 cbiO cobalt transport 99.1 1.4E-10 2.9E-15 134.2 8.7 65 624-688 18-84 (320)
481 cd03248 ABCC_TAP TAP, the Tran 99.1 1.2E-10 2.6E-15 128.4 7.8 65 624-688 8-72 (226)
482 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.1 9E-11 2E-15 128.7 6.6 61 628-688 1-62 (218)
483 TIGR00960 3a0501s02 Type II (G 99.1 1E-10 2.3E-15 128.0 7.1 61 627-688 1-61 (216)
484 cd03223 ABCD_peroxisomal_ALDP 99.1 9.9E-11 2.2E-15 122.6 6.6 59 628-688 1-59 (166)
485 cd03247 ABCC_cytochrome_bd The 99.1 1.4E-10 3E-15 123.1 7.3 60 628-688 1-60 (178)
486 COG1136 SalX ABC-type antimicr 99.1 1.1E-10 2.5E-15 125.5 6.6 61 628-688 2-63 (226)
487 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.1 1.2E-10 2.7E-15 129.4 7.1 61 628-688 1-61 (238)
488 cd03266 ABC_NatA_sodium_export 99.1 1.3E-10 2.8E-15 127.4 7.1 61 628-688 2-63 (218)
489 COG1119 ModF ABC-type molybden 99.1 3.9E-10 8.5E-15 120.4 10.3 61 624-687 28-88 (257)
490 cd03263 ABC_subfamily_A The AB 99.1 1.2E-10 2.5E-15 128.0 6.6 60 628-688 1-60 (220)
491 TIGR02673 FtsE cell division A 99.1 1.3E-10 2.9E-15 126.9 6.9 60 627-688 1-60 (214)
492 cd03229 ABC_Class3 This class 99.1 1.3E-10 2.8E-15 123.3 6.6 58 628-688 1-58 (178)
493 PRK13650 cbiO cobalt transport 99.1 1.5E-10 3.3E-15 131.7 7.6 62 627-688 4-65 (279)
494 PRK10247 putative ABC transpor 99.1 1.4E-10 3.1E-15 127.7 7.1 62 624-688 4-65 (225)
495 cd03233 ABC_PDR_domain1 The pl 99.1 1.4E-10 3E-15 125.6 6.7 62 627-688 3-68 (202)
496 PTZ00132 GTP-binding nuclear p 99.1 2E-10 4.4E-15 125.6 8.1 42 1127-1168 157-203 (215)
497 cd03261 ABC_Org_Solvent_Resist 99.1 1.3E-10 2.7E-15 129.1 6.3 58 628-688 1-58 (235)
498 cd03259 ABC_Carb_Solutes_like 99.1 1.2E-10 2.5E-15 127.3 6.0 58 628-688 1-58 (213)
499 TIGR02211 LolD_lipo_ex lipopro 99.1 1.6E-10 3.5E-15 126.9 7.0 61 628-688 2-63 (221)
500 cd03246 ABCC_Protease_Secretio 99.1 1.9E-10 4.1E-15 121.4 7.2 60 628-688 1-60 (173)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-216 Score=2031.22 Aligned_cols=994 Identities=45% Similarity=0.734 Sum_probs=953.5
Q ss_pred CCCcccCch--hHHHHHHhHHHHHHhhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 000904 232 ITGFAAAGF--FSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYW 309 (1232)
Q Consensus 232 ~~p~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~ 309 (1232)
+.|.+.++. +|++||||++|++++|||++|+.+|+|+|+++|+++.++++|++.|+++.++.+ ++|+++++++++||
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~-~~psl~~al~~~f~ 200 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSG-KKPSLLRALLRTFG 200 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhcccc-CCcHHHHHHHHHHH
Confidence 344555554 999999999999999999999999999999999999999999999999875433 67899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 310 RDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAA 389 (1232)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~ 389 (1232)
+++++.++++.+.+.+.|++|++++.+++|+++++.+.+.||+||+++|++.++++++.|||+|..+++|+|+|++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~ 280 (1381)
T KOG0054|consen 201 RTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISA 280 (1381)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999987778899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 390 IYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAP 469 (1232)
Q Consensus 390 iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~ 469 (1232)
||||+|++++.+++++++|+|+|+|++|++|+.++++++|.+|++|+|+++++++||..+|+++++|++++++++|+|.+
T Consensus 281 IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~ 360 (1381)
T KOG0054|consen 281 IYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSF 360 (1381)
T ss_pred HHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 000904 470 LAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVST 549 (1232)
Q Consensus 470 ~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~ 549 (1232)
++++++++|++.|+.+|+|+|+|||+|+|||+|||||||++|.++|+++|++|++++||..+..+++.++++++|+++++
T Consensus 361 ~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~ 440 (1381)
T KOG0054|consen 361 LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSV 440 (1381)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceE
Q 000904 550 ATFGACY-FLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVI 628 (1232)
Q Consensus 550 ~tf~~~~-~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I 628 (1232)
+||++|+ +.|+.+||++|||++|+||+|+.|+.++|..+++++||+||++|+++||..||.+++...+.+... .+..|
T Consensus 441 ~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~-~~~~i 519 (1381)
T KOG0054|consen 441 VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEA-GENAI 519 (1381)
T ss_pred HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCC-CCceE
Confidence 9999999 778999999999999999999999999999999999999999999999999999887765333322 56789
Q ss_pred EEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccc---------------------
Q 000904 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI--------------------- 687 (1232)
Q Consensus 629 ~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v--------------------- 687 (1232)
+++|++|+|+++++.|+|+||||+|++|+++||||++||||||||++|+||+++.+|++
T Consensus 520 ~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvr 599 (1381)
T KOG0054|consen 520 EIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVR 599 (1381)
T ss_pred EEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHH
Confidence 99999999998666679999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 600 eNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg 679 (1381)
T KOG0054|consen 600 ENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG 679 (1381)
T ss_pred HhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 680 ~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 759 (1381)
T KOG0054|consen 680 KHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESG 759 (1381)
T ss_pred HHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhcccccccccccc
Confidence
Q ss_pred ---------------------------------------------------------------------------ccccc
Q 000904 688 ---------------------------------------------------------------------------LQNSW 692 (1232)
Q Consensus 688 ---------------------------------------------------------------------------~~~~~ 692 (1232)
.+++|
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~W 839 (1381)
T KOG0054|consen 760 ESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYW 839 (1381)
T ss_pred ccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568
Q ss_pred ccccccCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHH
Q 000904 693 LAANVENPN------VSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLS 766 (1232)
Q Consensus 693 l~~~~~~~~------~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~iln 766 (1232)
++++.+... .+...++++|.++++++.++.+.+++.+...++++++.+|++|+++++|+||+|||+||.|||+|
T Consensus 840 Ls~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILN 919 (1381)
T KOG0054|consen 840 LSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILN 919 (1381)
T ss_pred HHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhh
Confidence 875443211 35678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 000904 767 RVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANH 846 (1232)
Q Consensus 767 R~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~ 846 (1232)
|||+|++.+|..+|..+..++...+++++.+++++++.|+++++.+|+.++++++++||.+++||++|+++.++||+++|
T Consensus 920 RFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh 999 (1381)
T KOG0054|consen 920 RFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSH 999 (1381)
T ss_pred hcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 000904 847 LAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMA 926 (1232)
Q Consensus 847 ~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~ 926 (1232)
++|+++|+.|||||+++++|.+++..++|.+.+++|....++||++.|+|+++++++..++++++..+.+..+||.+|++
T Consensus 1000 ~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLs 1079 (1381)
T KOG0054|consen 1000 FSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLS 1079 (1381)
T ss_pred HHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988887665789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceee
Q 000904 927 LSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGI 1006 (1232)
Q Consensus 927 l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~v 1006 (1232)
++|++++++.++|.+++.+++|+.|+||||+.+|+++|+|+|...+..+||++||..|+|+|+|+++||+|+.|+|||||
T Consensus 1080 lsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~i 1159 (1381)
T KOG0054|consen 1080 LSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGI 1159 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCc
Confidence 99999999999999999999999999999999999999997777766669999999999999999999999999999999
Q ss_pred eEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCC
Q 000904 1007 SCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQ 1086 (1232)
Q Consensus 1007 sl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~ 1086 (1232)
||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++||||+++++|||||+||+||+|+||||+++
T Consensus 1160 s~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e 1239 (1381)
T KOG0054|consen 1160 SFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDE 1239 (1381)
T ss_pred eEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 000904 1087 HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIR 1166 (1232)
Q Consensus 1087 ~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~ 1166 (1232)
|+|+|||+|||+|+|++.|+++|.|||+.|.|+|+|||.||||++||||||||++||||||||||++|++||..||++||
T Consensus 1240 ~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR 1319 (1381)
T KOG0054|consen 1240 YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 1319 (1381)
T ss_pred cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhhhh
Q 000904 1167 AEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSHLH 1227 (1232)
Q Consensus 1167 ~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~~~ 1227 (1232)
++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++++++.++.
T Consensus 1320 ~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~~ 1380 (1381)
T KOG0054|consen 1320 EEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSSR 1380 (1381)
T ss_pred HHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999887653
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-166 Score=1665.37 Aligned_cols=1173 Identities=31% Similarity=0.531 Sum_probs=977.4
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000904 27 LLLSDPNSCINHALIICFDVLLLAMLLFNMIQKSSSKSLYIPVRFQ--RFTTLQKVAAVVNSCLGIAYLCLGTWILEEKL 104 (1232)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1232)
+...+|| +++.++.++..+++++++...++...+......+..+ .......+..+||....+++...++.......
T Consensus 26 ~~~~~~c--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (1622)
T PLN03130 26 FGAYTPC--ATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDG 103 (1622)
T ss_pred cCCCCcc--HHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 5558999 9999999999999888888777754221111112211 12235556666777777766555444321111
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHHHHhccC--CCCchhHHHHHHH---HHHHHHHHHHHHHHHhhcccccccchh
Q 000904 105 RKTHTALPLNWWLLVLFQGVTWLLVSLIVSLRGNH--LPRAPMRLLSVLS---FLFAGTVCVLSIFAAILSKDVTIKTAV 179 (1232)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1232)
..++.......++.+++..++++++..+...++.+ .+++.+++||++. .++.++ ........+... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~ 176 (1622)
T PLN03130 104 QTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLV---LSVKEYYSSFVL----YL 176 (1622)
T ss_pred ccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHH---HHHHHHHhcccc----ce
Confidence 11112222222455566666666666644444433 5899999999998 666555 111222211100 11
Q ss_pred hhhhHHHHHHHHH---HHhhccccccccccccccCcCCCCCCCc---CCCCCCCCCCCCCCcccCchhHHHHHHhHHHHH
Q 000904 180 DVLSFPGAILLLL---CAYKVFKHEETDVKIGENGLYAPLNGEA---NGLGKDHSAGHITGFAAAGFFSRLTFWWLNPLM 253 (1232)
Q Consensus 180 ~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~ 253 (1232)
.+..+.+.+.+.+ ..+...+... .+.|...+. ..+++...+.+++||++||+|||++|||+||++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~ 247 (1622)
T PLN03130 177 YISEVAAQVLFGILLLVYFPNLDPYP---------GYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLM 247 (1622)
T ss_pred ehhHHHHHHHHHHHHHHHHhcCCCCc---------ccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHH
Confidence 2222222222211 2221111100 111111000 001222334677999999999999999999999
Q ss_pred HhhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 254 KRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLL 333 (1232)
Q Consensus 254 ~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll 333 (1232)
++|||++|+.+|||+|+++|+++.++++|++.|+++.+ +++|+++++++++||+.++.+++++++..++.+++|+++
T Consensus 248 ~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll 324 (1622)
T PLN03130 248 QLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELK---KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLL 324 (1622)
T ss_pred HHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753 345899999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHH
Q 000904 334 NAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNY 413 (1232)
Q Consensus 334 ~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nl 413 (1232)
+.+++++.+++ ..+.||.++++++++.++.+++.++|++...++++++|+++...||+|.++++...+++.++|+++|+
T Consensus 325 ~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl 403 (1622)
T PLN03130 325 NLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNL 403 (1622)
T ss_pred HHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHH
Confidence 99999997644 23568888888888888888888899999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 414 VTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACS 493 (1232)
Q Consensus 414 ms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~ 493 (1232)
|++|++++.+++.++|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++.+++.|+.+|+|++.++
T Consensus 404 ~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~ 483 (1622)
T PLN03130 404 MTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMN 483 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHH
Q 000904 494 EALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVAT 573 (1232)
Q Consensus 494 E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lal 573 (1232)
|+|+|||+||+|+||+.|.+++++.|++|+++.++..+..++..+++..+|.++++++|++|.+.++++|++.+|+++++
T Consensus 484 E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l 563 (1622)
T PLN03130 484 EVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSL 563 (1622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888888989999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEe
Q 000904 574 LRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEV 653 (1232)
Q Consensus 574 f~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i 653 (1232)
|++++.|+..+|..+..+.++++|++||++||+.+|...... .+... ....|+++|++|+|++++++++|+|+||+|
T Consensus 564 ~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~-~~~~I~~~nvsf~y~~~~~~~vL~~inl~i 640 (1622)
T PLN03130 564 FAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN--PPLEP-GLPAISIKNGYFSWDSKAERPTLSNINLDV 640 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC--CcccC-CCCceEEEeeEEEccCCCCCceeeceeEEe
Confidence 999999999999999999999999999999998876532211 11111 234799999999998655568999999999
Q ss_pred cCCCeEEEEeccccchHHHHHHHHhcCCCcc-ccc---------------------------------------------
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQ-GTI--------------------------------------------- 687 (1232)
Q Consensus 654 ~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~-G~v--------------------------------------------- 687 (1232)
++||+++|||++|||||||+++|+|++++.+ |++
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~ 720 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ 720 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999 776
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 721 ~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l 800 (1622)
T PLN03130 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800 (1622)
T ss_pred HHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCH
Confidence
Q ss_pred -----------c----------------cc-cc----cccc-----------c-----------c--------------C
Q 000904 688 -----------L----------------QN-SW----LAAN-----------V-----------E--------------N 699 (1232)
Q Consensus 688 -----------~----------------~~-~~----l~~~-----------~-----------~--------------~ 699 (1232)
. .+ .+ .... . . .
T Consensus 801 ~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1622)
T PLN03130 801 HFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKK 880 (1622)
T ss_pred hHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00 00 0000 0 0 0
Q ss_pred C---------------C-c---------------------------------------------------chhHHHHHHH
Q 000904 700 P---------------N-V---------------------------------------------------STLRLIVVYL 712 (1232)
Q Consensus 700 ~---------------~-~---------------------------------------------------~~~~~~~v~~ 712 (1232)
. . + ....++++|+
T Consensus 881 ~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~ 960 (1622)
T PLN03130 881 SKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYA 960 (1622)
T ss_pred ccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHH
Confidence 0 0 0 0011222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHH
Q 000904 713 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792 (1232)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~ 792 (1232)
+++++..++.+.+.+.....+.+++.++|++++++++++|++|||++|+|+++||+++|++.+|..++..+..++...+.
T Consensus 961 ~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~ 1040 (1622)
T PLN03130 961 LLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQ 1040 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555556666677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHH
Q 000904 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 793 ~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~ 872 (1232)
+++.+++++...|..+++.+|+.++++.++++|.+..|++++.+..+++|+++|+.|++.|+.|||+|+.+++|.+.+.+
T Consensus 1041 ~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~ 1120 (1622)
T PLN03130 1041 LLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGR 1120 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHH
Confidence 99999988888888778888888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGT-----FTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 873 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~-----~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
.+|.+.+..+.....++|+..+++.++.+++...+.+.+.. .+. ..++.+|++++|++.+...+.++.+....+
T Consensus 1121 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~ 1199 (1622)
T PLN03130 1121 SMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLA 1199 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888999999999988877766555444432 221 226889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
++.+.++||+.+|.+.|+|++...++..+++.||..|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||
T Consensus 1200 e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1200 ENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999998887644344456678999999999999999998777899999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHh
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE 1107 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~ 1107 (1232)
||+++|+|+++|++|+|.|||+||++++++++|++|++|||||.||+||||+||||+++++|+|+|+||++++++++|.+
T Consensus 1280 TLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1280 SMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 000904 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1108 ~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~ 1187 (1232)
+|.||||.|+|+|.|||||||||+||||||+|+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+++|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhh
Q 000904 1188 TMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSH 1225 (1232)
Q Consensus 1188 DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~ 1225 (1232)
|||+|||+|+|+|+|+|++|+++++|.|++|+++++..
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~ 1477 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAA 1477 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChh
Confidence 99999999999999999999998789999999988864
No 3
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.5e-162 Score=1632.06 Aligned_cols=1089 Identities=32% Similarity=0.557 Sum_probs=935.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhhhHHHHHHHH
Q 000904 114 NWWLLVLFQGVTWLLVSLIVSLRGNH--LPRAPMRLLSVLSFLFAGTVCVLSIFAAILSKDVTIKTAVDVLSFPGAILLL 191 (1232)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 191 (1232)
.....+++..++|++++++...++++ +.|..+.+||++..++.+..+++........... . ..+....+...+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 176 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAI-V-DPFRDTTFYIYFALV 176 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccc-c-cceehhhHHHHHHHH
Confidence 33555677778887777666666554 5788999999999999888887664321111000 0 011011111111111
Q ss_pred HHHhhccccccccccccccCcCCCCCCCcCCCCCCCCCCCCCCcccCchhHHHHHHhHHHHHHhhccCCCCCCCCCCCCh
Q 000904 192 LCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKDHSAGHITGFAAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRK 271 (1232)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~ 271 (1232)
...+..... . ...|+..+. .....++||++||++||++|||+||++++|||++|+.+|||++++
T Consensus 177 ~~~~~~~~~-~---------~~~~~~~~~------~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~ 240 (1522)
T TIGR00957 177 LSQLVLSCF-S---------DKSPLFSET------NHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNK 240 (1522)
T ss_pred HHHHHHHhh-c---------CCCCccccc------cccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCH
Confidence 111111100 0 112333210 111346899999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHHhhhc--------------------------------------CCCCCchHHHHHHHHHHHHHH
Q 000904 272 AEQAESCYFQFLDQLNKQKQA--------------------------------------EPSSQPSVLRTIIICYWRDIF 313 (1232)
Q Consensus 272 ~~~~~~~~~~f~~~w~~~~~~--------------------------------------~~~~~~~l~~~l~~~~~~~~~ 313 (1232)
+++++.++++|++.|+++.++ ++.++++|+++++++||+.++
T Consensus 241 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l 320 (1522)
T TIGR00957 241 EDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFL 320 (1522)
T ss_pred hHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHH
Confidence 999999999999999876321 012357899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 314 MSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKK 393 (1232)
Q Consensus 314 ~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K 393 (1232)
.+++++++.+++.+++|++++.+++|+.+++.+.+.||+++++++++.++.+++.++|+|...++|+++|+++.+.||+|
T Consensus 321 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K 400 (1522)
T TIGR00957 321 MSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRK 400 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999976654556799999999999999999999999999999999999999999999
Q ss_pred HhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 394 QLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKL 473 (1232)
Q Consensus 394 ~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~~~~ 473 (1232)
.|+++...+++.++|+++|+|++|++|+.++..++|.+|..|+|+++++++||..+|+++++|++++++++|++..+++.
T Consensus 401 ~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~ 480 (1522)
T TIGR00957 401 ALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMK 480 (1522)
T ss_pred HHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 000904 474 QHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFG 553 (1232)
Q Consensus 474 ~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~ 553 (1232)
++++++++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+..+...+.+..+|.++.+++|+
T Consensus 481 ~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 560 (1522)
T TIGR00957 481 TKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFA 560 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888899999999999
Q ss_pred HHHHh--CCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEE
Q 000904 554 ACYFL--NVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIK 631 (1232)
Q Consensus 554 ~~~~~--~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~ 631 (1232)
+|.+. ++.|+++.+|+++++|++++.|+..+|..+..+.++++|++||++||+.+|.++...............|+++
T Consensus 561 ~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 640 (1522)
T TIGR00957 561 VYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVH 640 (1522)
T ss_pred HHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEE
Confidence 99876 4679999999999999999999999999999999999999999999988765433211111100022479999
Q ss_pred eeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccc------------------------
Q 000904 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI------------------------ 687 (1232)
Q Consensus 632 ~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v------------------------ 687 (1232)
|++|+|+.+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|++
T Consensus 641 ~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI 719 (1522)
T TIGR00957 641 NATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENI 719 (1522)
T ss_pred EeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHh
Confidence 999999743 3589999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 720 ~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i 799 (1522)
T TIGR00957 720 LFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 799 (1522)
T ss_pred hcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence
Q ss_pred ----------------------------------c----------------cc-cc---cc-c---------c-------
Q 000904 688 ----------------------------------L----------------QN-SW---LA-A---------N------- 696 (1232)
Q Consensus 688 ----------------------------------~----------------~~-~~---l~-~---------~------- 696 (1232)
. .+ .. +. . .
T Consensus 800 ~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 879 (1522)
T TIGR00957 800 FEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALV 879 (1522)
T ss_pred HHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccc
Confidence 0 00 00 00 0 0
Q ss_pred --c---------------------------------------------c--C-C-C---c-----------c--------
Q 000904 697 --V---------------------------------------------E--N-P-N---V-----------S-------- 703 (1232)
Q Consensus 697 --~---------------------------------------------~--~-~-~---~-----------~-------- 703 (1232)
. + . . . . +
T Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~ 959 (1522)
T TIGR00957 880 SGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYM 959 (1522)
T ss_pred cccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHH
Confidence 0 0 0 0 0 0 0
Q ss_pred --------------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 704 --------------------------------------------TLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKS 739 (1232)
Q Consensus 704 --------------------------------------------~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 739 (1232)
...++.+|.+++++..++.+.+.+.....+.+++.+
T Consensus 960 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1522)
T TIGR00957 960 KAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRV 1039 (1522)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112233333333333444444555667889999
Q ss_pred HHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 740 LFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAI 819 (1232)
Q Consensus 740 l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~ 819 (1232)
+|++++++++++|++|||++|+|+++||+++|++.+|..++..+..++...+..++.+++++...|+++++.+|++++++
T Consensus 1040 l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~ 1119 (1522)
T TIGR00957 1040 LHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYF 1119 (1522)
T ss_pred HHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999899988888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Q 000904 820 RLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLS 899 (1232)
Q Consensus 820 ~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~ 899 (1232)
.++++|.+..|++++.+..+++|+++|+.|+++|+.+||+|+.+++|.+++.+.+|...++.+.....++|+..+++.++
T Consensus 1120 ~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1199 (1522)
T TIGR00957 1120 FVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVG 1199 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999987
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCC
Q 000904 900 ATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPN 979 (1232)
Q Consensus 900 ~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~ 979 (1232)
.+++..++.+.+. ..+.+++|.+|++++|++++..++.++++.+.++++.+.|+||+.+|.+.|+|++...+...++++
T Consensus 1200 ~~~~~~~~~~~v~-~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~ 1278 (1522)
T TIGR00957 1200 NCIVLFAALFAVI-SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSG 1278 (1522)
T ss_pred HHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCC
Confidence 7655554444432 256789999999999999999999999999999999999999999999888776533333455678
Q ss_pred CCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh
Q 000904 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 980 wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1059 (1232)
||..|.|+|+||+|+|+++.++||+|+||+|++|||||||||||||||||+++|+|+++|++|+|.|||+||++++++++
T Consensus 1279 wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1279 WPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 99999999999999998776789999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1060 RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|++|++|||||+||+||||+||||+++++|+|+|+||++|+++++|.++|+||||.|+|+|.|||||||||+||||||++
T Consensus 1359 R~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred HhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHH
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
+|+|||||||||+||.+||+.||++|++.+++||||+||||++++++||||+|||+|+|+|+|+|++|+++ +|.|++|+
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~ 1517 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMA 1517 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 69999999
Q ss_pred HHHH
Q 000904 1220 REYW 1223 (1232)
Q Consensus 1220 ~~~~ 1223 (1232)
++.+
T Consensus 1518 ~~~g 1521 (1522)
T TIGR00957 1518 KDAG 1521 (1522)
T ss_pred HHcC
Confidence 9854
No 4
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.3e-162 Score=1626.77 Aligned_cols=1174 Identities=30% Similarity=0.500 Sum_probs=974.7
Q ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000904 27 LLLSDPNSCINHALIICFDVLLLAMLLFNMIQKSSSKSLYIPVRFQ--RFTTLQKVAAVVNSCLGIAYLCLGTWILEEKL 104 (1232)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1232)
+...+|| +++.++..+..+++++++...++...+++....+..+ .......+..+|+....+++...+..... ..
T Consensus 26 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 102 (1495)
T PLN03232 26 FGAYTPC--AIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFD-MD 102 (1495)
T ss_pred cCCCCcc--HHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cc
Confidence 4458999 9999999999888888887777654311111112111 11234455666666666665444333311 11
Q ss_pred hc-cCCCcchhHHHHHHHHHHHHHHHHHHHHHhccC--CCCchhHHHHHHH---HHHHHHHHHHHHHHHhhcccccccch
Q 000904 105 RK-THTALPLNWWLLVLFQGVTWLLVSLIVSLRGNH--LPRAPMRLLSVLS---FLFAGTVCVLSIFAAILSKDVTIKTA 178 (1232)
Q Consensus 105 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1232)
.. ++.......++.+++..+++.++..+...++.+ .+++.+++||++. .++.++ ........+... .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~ 175 (1495)
T PLN03232 103 EETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLV---LPLKNSINRTAL----Y 175 (1495)
T ss_pred cccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHH---HHHHHHHhcccc----c
Confidence 11 111222222555677777777766655444443 5899999999998 666555 111111211100 1
Q ss_pred hhhhhHHHHHHHHHHHhhccccccccccccccCcCC----CCCCCcCCCCCCCCCCCCCCcccCchhHHHHHHhHHHHHH
Q 000904 179 VDVLSFPGAILLLLCAYKVFKHEETDVKIGENGLYA----PLNGEANGLGKDHSAGHITGFAAAGFFSRLTFWWLNPLMK 254 (1232)
Q Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~ 254 (1232)
..+..+...+.+.+..+...++..+.+ .+. +... ...++..+.+.+++||++||+|||+||+|+||+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~ 248 (1495)
T PLN03232 176 LCISSRCCQALFGILLLVYIPELDPYP------GYHILNNESLD-NVEYDALRGGENICPERYASIFSRIYFSWMTPLMQ 248 (1495)
T ss_pred eehhHHHHHHHHHHHHHHhcccCCCCC------ccccccccccc-ccccccccccCCCCccccCCHHHHHHHHHHHHHHH
Confidence 122222222221111111111111100 111 0010 00011223346789999999999999999999999
Q ss_pred hhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 255 RGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLN 334 (1232)
Q Consensus 255 ~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~ 334 (1232)
+|||++|+.+|||+|+++|+++.++++|++.|+++.+ +++++++++++++|++.++.+++++++.+++.+++|++++
T Consensus 249 ~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~ 325 (1495)
T PLN03232 249 LGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR---RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILS 325 (1495)
T ss_pred HHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987743 3468999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHH
Q 000904 335 AFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYV 414 (1232)
Q Consensus 335 ~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlm 414 (1232)
.+++++++++ ..+.||.++++++++.++.+++.++|++...+++.++|+.+...+|+|.++++....++.++|+++|+|
T Consensus 326 ~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~l 404 (1495)
T PLN03232 326 HLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMI 404 (1495)
T ss_pred HHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHH
Confidence 9999997654 345688899999999999999999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 415 TVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSE 494 (1232)
Q Consensus 415 s~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E 494 (1232)
++|++++.++..++|.+|..|++++++++++|..+|+++++|++++++++|++.++++++.+.+++.|+.+|+|.+.++|
T Consensus 405 s~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E 484 (1495)
T PLN03232 405 TTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINE 484 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHH
Q 000904 495 ALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATL 574 (1232)
Q Consensus 495 ~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf 574 (1232)
+++|||+||+|+||+.|.+++++.|++|++..+|..+..+...+++...|.++++++|++|.+.++++|++.+|+++++|
T Consensus 485 ~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~ 564 (1495)
T PLN03232 485 ILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLF 564 (1495)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888888889888899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEec
Q 000904 575 RLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVR 654 (1232)
Q Consensus 575 ~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~ 654 (1232)
+.++.|+..+|..+..+.++++|++||++||+.+|...... .+... ....|+++|++|+|+.++++|+|+|+||+|+
T Consensus 565 ~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~-~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~ 641 (1495)
T PLN03232 565 AVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQP-GAPAISIKNGYFSWDSKTSKPTLSDINLEIP 641 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCC-CCCcEEEEeeEEEcCCCCCCceeeeeEEEEc
Confidence 99999999999999999999999999999998765322110 11111 2347999999999986545689999999999
Q ss_pred CCCeEEEEeccccchHHHHHHHHhcCCCccccc-----------------------------------------------
Q 000904 655 PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI----------------------------------------------- 687 (1232)
Q Consensus 655 ~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v----------------------------------------------- 687 (1232)
+||+++|||++|||||||+++|+||++|.+|.+
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~ 721 (1495)
T PLN03232 642 VGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQH 721 (1495)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999998864
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 722 di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~ 801 (1495)
T PLN03232 722 DLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLH 801 (1495)
T ss_pred HHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChh
Confidence
Q ss_pred -------------------c-------cc---------------------------------------------------
Q 000904 688 -------------------L-------QN--------------------------------------------------- 690 (1232)
Q Consensus 688 -------------------~-------~~--------------------------------------------------- 690 (1232)
. .+
T Consensus 802 ~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1495)
T PLN03232 802 FLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRG 881 (1495)
T ss_pred hHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00
Q ss_pred ---------------------------------------------------ccccccccCC---CcchhHHHHHHHHHHH
Q 000904 691 ---------------------------------------------------SWLAANVENP---NVSTLRLIVVYLLIGF 716 (1232)
Q Consensus 691 ---------------------------------------------------~~l~~~~~~~---~~~~~~~~~v~~~l~~ 716 (1232)
+|+.++.+.. ......|+++|.++++
T Consensus 882 ~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~ 961 (1495)
T PLN03232 882 RSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGF 961 (1495)
T ss_pred hhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH
Confidence 0000000000 0001234455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 000904 717 VSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSN 796 (1232)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~ 796 (1232)
+..++.+.+.+.....+.+++.++|++++++++++|++|||++|+|+++||+++|++.+|..++..+..++...+..++.
T Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~ 1041 (1495)
T PLN03232 962 GQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLST 1041 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777888999999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHh
Q 000904 797 LGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDT 876 (1232)
Q Consensus 797 l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~ 876 (1232)
+++++...+...++.+|+.++++..+.+|.+..|++++.+..+++|+++|+.|++.|+.|||+|+.+++|.+.+.+..|.
T Consensus 1042 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~ 1121 (1495)
T PLN03232 1042 FALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHH
Confidence 88888878777777788888888888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 877 NASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTF-----TPGFIGMALSYGLSLNSSLVMSIQNQCTLANYI 951 (1232)
Q Consensus 877 ~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~-----~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~ 951 (1232)
+.+..+.....+.|+..+++.++.+++...+.+.+.. .+.+ .++.+|++++|+.++...+.++++.+.++++.+
T Consensus 1122 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~ 1200 (1495)
T PLN03232 1122 NIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSL 1200 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888899999998887766555444443332 2222 256788899999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 952 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
.++||+.+|.+.|+|++...+...++++||..|.|+|+||+|+|+++.++||+|+||+|++|||||||||||||||||++
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~ 1280 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLN 1280 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999888765432333456679999999999999999887778999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
+|+|+++|++|+|.|||+||++++++++|++|++|||||++|+||||+||||+++++|+|+|+||+++++++++.++|+|
T Consensus 1281 lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~G 1360 (1495)
T PLN03232 1281 ALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFG 1360 (1495)
T ss_pred HHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
|||.++|+|.|||||||||+||||||+++|+|||||||||+||.+||+.||++|++.+++||+|+||||++++++||||+
T Consensus 1361 Ldt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl 1440 (1495)
T PLN03232 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKIL 1440 (1495)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhh
Q 000904 1192 AISDGKLAEYDEPMKLMKREGSLFGQLVREYWSH 1225 (1232)
Q Consensus 1192 VL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~ 1225 (1232)
|||+|+|+|+|+|+||+++++|.|++|+++++..
T Consensus 1441 VL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1441 VLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred EEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 9999999999999999998778999999988764
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.8e-154 Score=1548.92 Aligned_cols=981 Identities=27% Similarity=0.473 Sum_probs=873.3
Q ss_pred CCCcccCchhHHHHHHhHHHHHHhhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHH
Q 000904 232 ITGFAAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSVLRTIIICYWRD 311 (1232)
Q Consensus 232 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~l~~~l~~~~~~~ 311 (1232)
.+||++||+|||++|||+||++++|||++|+.+|||+|+++++++.++++|++.|+++..+ +.++++|+++++++|++.
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~L~~~l~~~~~~~ 81 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS-AKKNPKLLNALRRCFFWR 81 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999886532 245689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 312 IFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGF-KYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAI 390 (1232)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~i 390 (1232)
+++.++++++.+++.+++|++++.+++|++.++.. .+.||+++++++++.++++++.++++|...++++++|++++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 82 FVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999643322 35699999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 391 YKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAPL 470 (1232)
Q Consensus 391 y~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~ 470 (1232)
|+|.|+++....++.++|+++|+|++|++|+.+++.++|.+|..|+|+++++++||.++||++++|++++++++|++.++
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~ 241 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACL 241 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 000904 471 AKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTA 550 (1232)
Q Consensus 471 ~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~ 550 (1232)
++++.++|+++|+.+|+|++.++|+|++||+||+||||+.|.++++++|++|++.+++..+..+...++++..|.+++++
T Consensus 242 ~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1490)
T TIGR01271 242 GQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFL 321 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHhCCCcChhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEE
Q 000904 551 TFGACYFLNVPLYASNVFTFVATLRLVQDPIR-VIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVIS 629 (1232)
Q Consensus 551 tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~-~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~ 629 (1232)
+|++|.+.++ ++++++||++++|++|+.|+. .+|..+..+.++++|++||++||+.+|.++... .. ....|+
T Consensus 322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--~~----~~~~i~ 394 (1490)
T TIGR01271 322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY--NL----TTTEVE 394 (1490)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--cC----CCCceE
Confidence 9999988754 789999999999999999985 799999999999999999999999887654221 11 224699
Q ss_pred EEeeEEEecCC-------------------------------CCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHh
Q 000904 630 IKSASFSWEES-------------------------------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678 (1232)
Q Consensus 630 i~~~sfsw~~~-------------------------------~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilG 678 (1232)
++|++|+|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999631 01468999999999999999999999999999999999
Q ss_pred cCCCccccc-----------------------------------------------------------------------
Q 000904 679 EVPHTQGTI----------------------------------------------------------------------- 687 (1232)
Q Consensus 679 e~~~~~G~v----------------------------------------------------------------------- 687 (1232)
+++|.+|++
T Consensus 475 ~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 475 ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 999999987
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence
Q ss_pred -cc-c----ccc--------------------------c--c-----c----------c-c-------------------
Q 000904 688 -LQ-N----SWL--------------------------A--A-----N----------V-E------------------- 698 (1232)
Q Consensus 688 -~~-~----~~l--------------------------~--~-----~----------~-~------------------- 698 (1232)
.. . .+. . . . . .
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1490)
T TIGR01271 635 QAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARK 714 (1490)
T ss_pred HhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0 000 0 0 0 0 0
Q ss_pred ----------------C--------------C------------------------------------------------
Q 000904 699 ----------------N--------------P------------------------------------------------ 700 (1232)
Q Consensus 699 ----------------~--------------~------------------------------------------------ 700 (1232)
. +
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1490)
T TIGR01271 715 FSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQT 794 (1490)
T ss_pred cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 0 0
Q ss_pred -------------------------------------------------------Ccch---hHHH---------HHHHH
Q 000904 701 -------------------------------------------------------NVST---LRLI---------VVYLL 713 (1232)
Q Consensus 701 -------------------------------------------------------~~~~---~~~~---------~v~~~ 713 (1232)
.... ..|+ .+++.
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~ 874 (1490)
T TIGR01271 795 SFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCL 874 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHH
Confidence 0000 0000 00000
Q ss_pred ---------------------------------------------------------HH--HHHHHHHHHHHHHHHHHHH
Q 000904 714 ---------------------------------------------------------IG--FVSTLFLMSRSLSSVVLGI 734 (1232)
Q Consensus 714 ---------------------------------------------------------l~--~~~~~~~~~~~~~~~~~~~ 734 (1232)
++ ....++.+.+.+.....+.
T Consensus 875 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1490)
T TIGR01271 875 VIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLL 954 (1490)
T ss_pred HHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011111223333344566
Q ss_pred HHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 735 RSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPV 814 (1232)
Q Consensus 735 ~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~ 814 (1232)
+.+.++|.+++++++++|++||+++|.|+++||+++|++.+|..++..+..++...+.+++.++++++..|+++++.+|+
T Consensus 955 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l 1034 (1490)
T TIGR01271 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPV 1034 (1490)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 000904 815 IFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQR 894 (1232)
Q Consensus 815 ~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~r 894 (1232)
+++++.++++|.+..|++++.+..+++|+++|+.|++.|+.|||+|+.++++.+++.+.+|...+.++.....++|+..+
T Consensus 1035 ~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1114 (1490)
T TIGR01271 1035 AVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMR 1114 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999998888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccC--
Q 000904 895 LETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVE-- 972 (1232)
Q Consensus 895 l~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~-- 972 (1232)
++.+....+....++.+. .....+|.+|++++|++.+...+.++++.+.++++.+.++||+.+|.+.|+|++...+
T Consensus 1115 ~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~ 1192 (1490)
T TIGR01271 1115 IDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 998776554443333322 1235678899999999999999999999999999999999999999988877542111
Q ss_pred ------------CCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC
Q 000904 973 ------------DNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA 1040 (1232)
Q Consensus 973 ------------~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~ 1040 (1232)
...+++.||..|.|+|+||+++|+++.+++|+|+||+|++|||||||||||||||||+++|+|+++ +
T Consensus 1193 ~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~ 1271 (1490)
T TIGR01271 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T 1271 (1490)
T ss_pred cccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C
Confidence 112455799999999999999999877889999999999999999999999999999999999998 7
Q ss_pred ccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1041 GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1041 ~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
+|+|.|||+||++++++++|++|+||||||+||+||||+||||+++++|+++|+||+++++++++.++|+||||.|+|+|
T Consensus 1272 ~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G 1351 (1490)
T TIGR01271 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351 (1490)
T ss_pred CcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE 1200 (1232)
.|||||||||+||||||+++|+|||||||||+||.+||+.||++|++.+++||||+||||++++.+||||+||++|+|+|
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHhhcCCHHHHHHHHHHh
Q 000904 1201 YDEPMKLMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~f~~l~~~~~~ 1224 (1232)
+|+|++|++ ++|.|++|+++.+.
T Consensus 1432 ~g~p~~Ll~-~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1432 YDSIQKLLN-ETSLFKQAMSAADR 1454 (1490)
T ss_pred eCCHHHHHc-CCcHHHHHHHHhCh
Confidence 999999997 48999999998775
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.6e-148 Score=1487.65 Aligned_cols=997 Identities=31% Similarity=0.485 Sum_probs=864.2
Q ss_pred CCCCCcccCchhHHHHHHhHHHHHHhhccCCCCCCCCCCCChhccHHHHHHHHHHHHHHhhhc-----------------
Q 000904 230 GHITGFAAAGFFSRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQA----------------- 292 (1232)
Q Consensus 230 ~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~----------------- 292 (1232)
..+.||++||||.++++.|++|++.+..|..|+.+|+|+-..+.|+-++..++.+..++...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 456899999999999999999999999999999999999999999977776666544332110
Q ss_pred --------------------------------------------------------------------------------
Q 000904 293 -------------------------------------------------------------------------------- 292 (1232)
Q Consensus 293 -------------------------------------------------------------------------------- 292 (1232)
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence
Q ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHH
Q 000904 293 ----------EPSSQPSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKI 362 (1232)
Q Consensus 293 ----------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~ 362 (1232)
..++..+|++++++++|+.++..++++++.+++.+++|++++.+++|+++++.....|++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~ 296 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQL 296 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 0023348999999999999999999999999999999999999999997655444458899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhc--cCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000904 363 LESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARL--MHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCI 440 (1232)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~--~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~ 440 (1232)
+++++.++|+|...+.|+++|++|.+.||+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|.+|+|+++
T Consensus 297 ~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~ 376 (1560)
T PTZ00243 297 IQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987654 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHH
Q 000904 441 ALIILFHAVGLATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRN 520 (1232)
Q Consensus 441 ~~~~L~~~lG~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~ 520 (1232)
++++||..+||++++|++++++++|++.+++|++.++++++|+++|+|++.++|++++||+||+||||+.|.++|++.|+
T Consensus 377 ~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~ 456 (1560)
T PTZ00243 377 SILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRA 456 (1560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000904 521 VEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSR 600 (1232)
Q Consensus 521 ~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~R 600 (1232)
+|++.+++..+..++..++++++|.++++++|++|++.|++||++++||++++|++++.|+.++|..++.+.++++|++|
T Consensus 457 ~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 457 RELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCcchh----c-----------------------------ccC------------------------CCCC
Q 000904 601 IVNFLEAPELQSMNI----R-----------------------------QKG------------------------NIEN 623 (1232)
Q Consensus 601 i~~fL~~~e~~~~~~----~-----------------------------~~~------------------------~~~~ 623 (1232)
|++||+.+|.+.... + ..+ ....
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 999998776321000 0 000 0000
Q ss_pred CcceEEEEeeEEEecCC-------------------------------------CCCCceeeeEEEecCCCeEEEEeccc
Q 000904 624 VNHVISIKSASFSWEES-------------------------------------SSKPTMRNISLEVRPGQKVAICGEVG 666 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~-------------------------------------~~~~~L~~inl~i~~Ge~vaIvG~~G 666 (1232)
..+.+.++|++|+|+.. .++++|+|+||+|++|++++|+|+||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 11346777877776421 13468999999999999999999999
Q ss_pred cchHHHHHHHHhcCCCccccc-----------------------------------------------------------
Q 000904 667 SGKSTLLAAILGEVPHTQGTI----------------------------------------------------------- 687 (1232)
Q Consensus 667 SGKSTLL~~ilGe~~~~~G~v----------------------------------------------------------- 687 (1232)
|||||||++|+|+++|.+|++
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 999999999999999999986
Q ss_pred -----------------------------------------------------------------------------c--
Q 000904 688 -----------------------------------------------------------------------------L-- 688 (1232)
Q Consensus 688 -----------------------------------------------------------------------------~-- 688 (1232)
.
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 0
Q ss_pred --------------cccc---ccc----cc-----------------------------cCC--C---------------
Q 000904 689 --------------QNSW---LAA----NV-----------------------------ENP--N--------------- 701 (1232)
Q Consensus 689 --------------~~~~---l~~----~~-----------------------------~~~--~--------------- 701 (1232)
...+ ... .. +.. .
T Consensus 857 G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 936 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLM 936 (1560)
T ss_pred CEEEEecCHHHHHhChHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 0000 000 00 000 0
Q ss_pred ---------cchh---H----------------------------------------------HHHHHHHHHHHHHHHHH
Q 000904 702 ---------VSTL---R----------------------------------------------LIVVYLLIGFVSTLFLM 723 (1232)
Q Consensus 702 ---------~~~~---~----------------------------------------------~~~v~~~l~~~~~~~~~ 723 (1232)
.... . ++.+|.++.++..++..
T Consensus 937 ~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~~~ 1016 (1560)
T PTZ00243 937 TREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVP 1016 (1560)
T ss_pred hHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHHH
Confidence 0000 0 00011111111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000904 724 SRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVV 803 (1232)
Q Consensus 724 ~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~ 803 (1232)
++.+.....+.+.++.+|++++++++++|++|||++|.|+++||+++|++.+|..++..+..++...+.+++.+++++..
T Consensus 1017 l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~ 1096 (1560)
T PTZ00243 1017 LRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSAS 1096 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233455678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHH
Q 000904 804 TWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQ 883 (1232)
Q Consensus 804 ~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~ 883 (1232)
.|.++++.+|+.++++.+.++|.+..|++++....+++|+.+++.|++.|+.+||+|+.++.+.+++.+.+|...+..+.
T Consensus 1097 ~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~ 1176 (1560)
T PTZ00243 1097 QPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYL 1176 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000904 884 TFAANEWLIQRLETLSATVISSAAFCMV---LLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQY 960 (1232)
Q Consensus 884 ~~~~~~wl~~rl~~~~~~~~~~~~~~~~---~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~ 960 (1232)
....++|+..+++++..++....+++.+ ....+.+++|.++++++|+.++...+.++++.+.++++.+.++||+.+|
T Consensus 1177 ~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~ 1256 (1560)
T PTZ00243 1177 ENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYY 1256 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999887766544333322 2234457899999999999999999999999999999999999999999
Q ss_pred cc-CCCCCCcc-----------------------cCCCCCC---CCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCC
Q 000904 961 MH-VPSEAPEV-----------------------VEDNRPP---PNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGG 1013 (1232)
Q Consensus 961 ~~-~~~e~~~~-----------------------~~~~~~~---~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~G 1013 (1232)
.+ .|.|+... .+...++ +.||..|.|+|+||+|+|+++.++||+||||+|++|
T Consensus 1257 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G 1336 (1560)
T PTZ00243 1257 TDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPR 1336 (1560)
T ss_pred HhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCC
Confidence 85 34332110 0011122 235567999999999999887778999999999999
Q ss_pred cEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHH
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIW 1093 (1232)
Q Consensus 1014 ekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~ 1093 (1232)
||||||||||||||||+++|+|+++|++|+|.|||+||+++++++||++|++|||||.||+||||+||||+++++|+|||
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC-CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCc
Q 000904 1094 EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR-SRILVLDEATASIDNATDMILQKTIRAEFADC 1172 (1232)
Q Consensus 1094 ~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~-~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~ 1172 (1232)
+||+++++++++.++|+||||.|+|+|.||||||||||||||||+++ |+|||||||||+||.+||+.||++|++.+++|
T Consensus 1417 ~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~ 1496 (1560)
T PTZ00243 1417 AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAY 1496 (1560)
T ss_pred HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999996 89999999999999999999999999999999
Q ss_pred EEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhhh
Q 000904 1173 TVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSHL 1226 (1232)
Q Consensus 1173 TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~~ 1226 (1232)
|||+||||++++.+||+|+|||+|+|+|+|+|+||+++++|.|++|+++.+...
T Consensus 1497 TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~~ 1550 (1560)
T PTZ00243 1497 TVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSE 1550 (1560)
T ss_pred EEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhH
Confidence 999999999999999999999999999999999999987899999999887543
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-110 Score=1036.64 Aligned_cols=901 Identities=20% Similarity=0.278 Sum_probs=712.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC--C----cchHHH---HHHHHHHHHHHHHHHH
Q 000904 298 PSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAG--F----KYEGYV---LAITLFVAKILESLSQ 368 (1232)
Q Consensus 298 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~--~----~~~g~~---l~~~~~~~~~~~~~~~ 368 (1232)
..+++..-+..+..+.++.+.++++.+..++.-++.+++++.+-.... . ...++. ++++++++.++ ..
T Consensus 16 ~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~---q~ 92 (1228)
T KOG0055|consen 16 FKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFI---QV 92 (1228)
T ss_pred HHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 456665555666667778888888888888777888888877754321 0 112222 23334444444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHH
Q 000904 369 RQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-----FWFHQIWTTSVQLCIALI 443 (1232)
Q Consensus 369 ~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-----~~~~~~w~~plqi~~~~~ 443 (1232)
.+|.+.+.|+..|+|..+..+|.||...+.+. +++|++++-|+.|+++|.|.+ .++|.+-.+..-++++
T Consensus 93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~-- 166 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDT----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIG-- 166 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeec----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 57999999999999999999999999998865 355999999999999998854 3444433332223333
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHH
Q 000904 444 ILFHAVGL-ATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVE 522 (1232)
Q Consensus 444 ~L~~~lG~-~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E 522 (1232)
...+| .+++++++.+++......+++.+.+...+.+++..+..++++|++.+||+|-.|+.|+...+|+.+.=+.-
T Consensus 167 ---F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~ 243 (1228)
T KOG0055|consen 167 ---FYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENA 243 (1228)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 33377 89999999999999999999999999999999999999999999999999999999999998887755544
Q ss_pred HHHHHHHHHHHHHHHHHH--hHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000904 523 YKWLSAVQLRKAYNTFLF--WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSR 600 (1232)
Q Consensus 523 ~~~l~k~~~~~~~~~~~~--~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~R 600 (1232)
.|...|..+..++...+. +.-......+|||..+++.+..|++++|+++...-+-...|.+..+.+..+.+|++|..+
T Consensus 244 ~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~ 323 (1228)
T KOG0055|consen 244 LKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYR 323 (1228)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHH
Confidence 444444444444332222 222234556788888878889999999999955555567888888899999999999999
Q ss_pred HHHHhCC-CCCCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhc
Q 000904 601 IVNFLEA-PELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679 (1232)
Q Consensus 601 i~~fL~~-~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe 679 (1232)
|.+.++. |++++...+...... .++.|+++|+.|+||++++.++|+|+||+|++|+.||+||+|||||||++++|.|.
T Consensus 324 I~~~i~~~~~i~~~~~~~~~~~~-~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf 402 (1228)
T KOG0055|consen 324 IFETIDRKPSIDPYSKGGRVLSS-IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF 402 (1228)
T ss_pred HHHHhcCCCCCCcccccCCcccc-cccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9999976 555554322212212 56899999999999999989999999999999999999999999999999999999
Q ss_pred CCCccccc------------------------------------------------------------------------
Q 000904 680 VPHTQGTI------------------------------------------------------------------------ 687 (1232)
Q Consensus 680 ~~~~~G~v------------------------------------------------------------------------ 687 (1232)
++|.+|+|
T Consensus 403 ydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 403 YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTL 482 (1228)
T ss_pred cCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccc
Confidence 99999998
Q ss_pred --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 483 vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~ 562 (1228)
T KOG0055|consen 483 VGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEE 562 (1228)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEEC
Confidence
Q ss_pred ------------------------c-------c--c--------cccc-------------------------ccc-cCC
Q 000904 688 ------------------------L-------Q--N--------SWLA-------------------------ANV-ENP 700 (1232)
Q Consensus 688 ------------------------~-------~--~--------~~l~-------------------------~~~-~~~ 700 (1232)
. . + .+.. +.. ..+
T Consensus 563 G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 642 (1228)
T KOG0055|consen 563 GKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEP 642 (1228)
T ss_pred CEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccc
Confidence 0 0 0 0000 000 000
Q ss_pred -------------------------------------------------------Cc-----chhHHHHHHHHHHHHHHH
Q 000904 701 -------------------------------------------------------NV-----STLRLIVVYLLIGFVSTL 720 (1232)
Q Consensus 701 -------------------------------------------------------~~-----~~~~~~~v~~~l~~~~~~ 720 (1232)
+. ....+..+|.+++++..+
T Consensus 643 ~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i 722 (1228)
T KOG0055|consen 643 VSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGI 722 (1228)
T ss_pred cccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012366778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCC--CCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000904 721 FLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS--TPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG 798 (1232)
Q Consensus 721 ~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~--~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~ 798 (1232)
+.++..+.+...|.+...++|.++++++++.++.|||. +. |++.+|+.+|...+...+...+..+++.+..++..++
T Consensus 723 ~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~ii 801 (1228)
T KOG0055|consen 723 TNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGII 801 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 55 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHH
Q 000904 799 VLAVVTWQVLFV---SIPVIFLAIRLQRYYFATAK-ELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLI 874 (1232)
Q Consensus 799 v~~~~~~~~~l~---~~p~~~l~~~~~~~~~~~~r-~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~ 874 (1232)
+.++..|++.++ ..|++++..+.+.+++.... +.+. ..........|++.+++||++|+.|++|++.+.+.+
T Consensus 802 iaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~----~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l 877 (1228)
T KOG0055|consen 802 IAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKK----AYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEEL 877 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998765 56888887777777665432 2222 112234567899999999999999999999998888
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 875 DTNASPFFQTFAANEWLIQRLETLSATVISSAAFC----MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANY 950 (1232)
Q Consensus 875 d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~----~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~ 950 (1232)
+...+..+.. ..|.+....+-..++.+..++. ..+..+|.+++..+-..+.-...-...+........+....
T Consensus 878 ~~p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka 954 (1228)
T KOG0055|consen 878 EKPRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKA 954 (1228)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 8766654332 2333333333333332222221 33455777777665443332222223344455566778888
Q ss_pred HHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEec--CCCCccceeeeEEEeCCcEEEEECCCCCChHH
Q 000904 951 IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYR--PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1028 (1232)
Q Consensus 951 ~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~--~~~~~vL~~vsl~I~~GekvgIVGrtGSGKST 1028 (1232)
..|+.++.+.++.+++-+...+.... .-+.+|+|+|+||+|+|+ |+ .+||+|+|++|++|+++|+||+|||||||
T Consensus 955 ~~Aa~~iF~i~dr~~~i~~~~~~~~~--~~~~~G~I~~~~V~F~YPsRP~-~~Il~~l~l~i~~GqTvALVG~SGsGKST 1031 (1228)
T KOG0055|consen 955 KIAAGSIFEILDRKPTIDPDSTSGGK--LPNVKGDIEFRNVSFAYPTRPD-VPVLNNLSLSIRAGQTVALVGPSGSGKST 1031 (1228)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCc--cccceeEEEEeeeEeeCCCCCC-chhhcCCcEEecCCCEEEEECCCCCCHHH
Confidence 88999999988766532211111111 113579999999999995 43 36999999999999999999999999999
Q ss_pred HHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHh
Q 000904 1029 LIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVRE 1107 (1232)
Q Consensus 1029 Ll~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~ 1107 (1232)
++.+|.|+|+|++|+|.|||+||++++++.||++|++|.|||.||++||||||.... +.+++||.+|++.++.++||.+
T Consensus 1032 vI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~s 1111 (1228)
T KOG0055|consen 1032 VISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISS 1111 (1228)
T ss_pred HHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998652 4699999999999999999999
Q ss_pred hccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 000904 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1108 ~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~ 1187 (1232)
+|+||||.|||.|.+||||||||+|||||++|+||||+||||||+||.++|+.+|++|++...++|+|+|||||+||++|
T Consensus 1112 LP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqna 1191 (1228)
T KOG0055|consen 1112 LPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNA 1191 (1228)
T ss_pred CcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1188 TMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1188 DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|.|.|+++|+|+|.|+|++|++ ++|.|++|++...
T Consensus 1192 D~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1192 DVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred CEEEEEECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 9999999999999999999999 5899999998653
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.9e-95 Score=968.77 Aligned_cols=917 Identities=18% Similarity=0.198 Sum_probs=659.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 299 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
.+++...+.+++.++++.++.++..++.++.|++++.+++-+..++.-....+++++..++..++..+....+.+.+.++
T Consensus 49 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 128 (1466)
T PTZ00265 49 LPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKI 128 (1466)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666778889999999999999999999999999987642211111111122111222222333333444445555
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGL-ATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~g 456 (1232)
..++|.. +|++.++++..-.+..++|+++|.++.|++.+.+.+ ..+..+...++.++.++++++. +.| .+++.
T Consensus 129 ~~~lR~~----~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~-~sw~Lalv~ 203 (1466)
T PTZ00265 129 LKTLKLE----FLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF-KNARLTLCI 203 (1466)
T ss_pred HHHHHHH----HHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 5555555 555555555554556678999999999999988865 3455555555666666555554 466 67777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
++++++++.+..++.+++.+..++..+..++..+.+.|.+++||+||.|+-|+.+.++..+..+.-.+...|.....+..
T Consensus 204 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~ 283 (1466)
T PTZ00265 204 TCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLH 283 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778878888889999988888888889999999999999999999999999999998876555544444444444443
Q ss_pred HHHHhHh--hHHHHHHHHHHHHHhCC--------CcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Q 000904 537 TFLFWSS--PVLVSTATFGACYFLNV--------PLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLE 606 (1232)
Q Consensus 537 ~~~~~~~--p~~v~~~tf~~~~~~~~--------~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~ 606 (1232)
..+.... -..+.+++||.+.+..+ .++++.+++.+....+...++..+.+.+..+.++++|.+||.+.++
T Consensus 284 ~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~ 363 (1466)
T PTZ00265 284 IGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222221 12344567888876643 5888988887655444455666666678999999999999999998
Q ss_pred CCCCCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccc
Q 000904 607 APELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686 (1232)
Q Consensus 607 ~~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~ 686 (1232)
.++..+......... ....|+++|++|+|+.++++++|+|+||+|++||++||+|+||||||||+++|+|.++|++|+
T Consensus 364 ~~~~~~~~~~~~~~~--~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 441 (1466)
T PTZ00265 364 RKPLVENNDDGKKLK--DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGD 441 (1466)
T ss_pred CCCCCCCCCCCccCC--CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCe
Confidence 743221111111111 123699999999998654568999999999999999999999999999999999998886554
Q ss_pred c---------------------------------------cc--------------------------------------
Q 000904 687 I---------------------------------------LQ-------------------------------------- 689 (1232)
Q Consensus 687 v---------------------------------------~~-------------------------------------- 689 (1232)
| ..
T Consensus 442 I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1466)
T PTZ00265 442 IIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521 (1466)
T ss_pred EEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence 4 00
Q ss_pred ---------------------c----------------------------------------------------------
Q 000904 690 ---------------------N---------------------------------------------------------- 690 (1232)
Q Consensus 690 ---------------------~---------------------------------------------------------- 690 (1232)
+
T Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~IL 601 (1466)
T PTZ00265 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL 601 (1466)
T ss_pred hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 0
Q ss_pred ------------------------------------------------cccccc--------------------------
Q 000904 691 ------------------------------------------------SWLAAN-------------------------- 696 (1232)
Q Consensus 691 ------------------------------------------------~~l~~~-------------------------- 696 (1232)
..+...
T Consensus 602 lLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 681 (1466)
T PTZ00265 602 ILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKN 681 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccc
Confidence 000000
Q ss_pred -----------------------------------------------------c--c--C--C------------Cc---
Q 000904 697 -----------------------------------------------------V--E--N--P------------NV--- 702 (1232)
Q Consensus 697 -----------------------------------------------------~--~--~--~------------~~--- 702 (1232)
. . . . ..
T Consensus 682 ~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1466)
T PTZ00265 682 NKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPD 761 (1466)
T ss_pred ccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence 0 0 0 0 00
Q ss_pred -----------------------c---------------------h---------hHHHHHH---HHH------------
Q 000904 703 -----------------------S---------------------T---------LRLIVVY---LLI------------ 714 (1232)
Q Consensus 703 -----------------------~---------------------~---------~~~~~v~---~~l------------ 714 (1232)
. . ..++.-| ..+
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1466)
T PTZ00265 762 EMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLY 841 (1466)
T ss_pred cccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000000 000
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCC--
Q 000904 715 ----------------------------------GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS-- 758 (1232)
Q Consensus 715 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~-- 758 (1232)
+++..++.+++.+.....+.+...+++.++++++++.|++|||.
T Consensus 842 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~ 921 (1466)
T PTZ00265 842 PVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDK 921 (1466)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCC
Confidence 00111112222333344566777889999999999999999986
Q ss_pred CCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-
Q 000904 759 TPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFA--TAKELMRL- 835 (1232)
Q Consensus 759 ~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~--~~r~l~rl- 835 (1232)
+++|++++|+++|++.+...+...+..++...+.++..++++++.+|.+.++.+|+.++.........+ ..++..+.
T Consensus 922 ~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1466)
T PTZ00265 922 HAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKE 1001 (1466)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999888777888888888888888888999998877766554443322111111 11111111
Q ss_pred ------------hhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000904 836 ------------NGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVI 903 (1232)
Q Consensus 836 ------------~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~ 903 (1232)
+..........+.|++.|+++||+|+.|+++.+++.+..+...+..........+.......+..+..
T Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1466)
T PTZ00265 1002 INQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFIN 1081 (1466)
T ss_pred ccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11113345778899999999999999999999888877766544333222211111111112211111
Q ss_pred HHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCC-CCCCC
Q 000904 904 SSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRP-PPNWP 981 (1232)
Q Consensus 904 ~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~-~~~wp 981 (1232)
..+ .+...++..|.++.|.+..++.+.+.....+..+.....++.....+.+|+.+.++.+++.+.......+ +...+
T Consensus 1082 ~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~ 1161 (1466)
T PTZ00265 1082 SFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKND 1161 (1466)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCC
Confidence 111 1122334478888887766555544333445566677888899999999999998765432211111111 00113
Q ss_pred CcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC---------------------
Q 000904 982 VVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP--------------------- 1039 (1232)
Q Consensus 982 ~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep--------------------- 1039 (1232)
..|.|+|+||+|+|+.. ..+||+|+||+|++||++||||+||||||||+++|.|+|+|
T Consensus 1162 ~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1162 IKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred CCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 45889999999999632 24699999999999999999999999999999999999999
Q ss_pred ---------------------------------CccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-
Q 000904 1040 ---------------------------------AGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS- 1085 (1232)
Q Consensus 1040 ---------------------------------~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~- 1085 (1232)
++|+|+|||+||+++++++||++|+||||||.||+|||||||....
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence 6999999999999999999999999999999999999999998763
Q ss_pred CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHH
Q 000904 1086 QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTI 1165 (1232)
Q Consensus 1086 ~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L 1165 (1232)
+.+|+||++|++.++++++|.++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||.+|++.|+++|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc--CCcEEEEEecChhhhhhcCeEEEEeC----CEE-EEecChhHHHhhcCCHHHHHHHHH
Q 000904 1166 RAEF--ADCTVITVAHRIPTVMDCTMVLAISD----GKL-AEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1166 ~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~----G~v-vE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
++.. +++|+|+||||++++++||+|+||++ |++ +|.|+|+||+++++|.|++|++..
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 9863 68999999999999999999999999 995 599999999985579999999754
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-85 Score=777.68 Aligned_cols=510 Identities=26% Similarity=0.399 Sum_probs=432.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHH
Q 000904 708 IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAV 787 (1232)
Q Consensus 708 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~ 787 (1232)
..+..++.+.++++...|...+.+.+.+...+++..+|++++++.++|||.+.+|++++|+++|...+...++..+...+
T Consensus 191 ~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~l 270 (716)
T KOG0058|consen 191 CTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGL 270 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 44556667778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchH
Q 000904 788 GATTNAYSNLGVLAVVTWQVLFV---SIPVIFL-AIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 863 (1232)
Q Consensus 788 ~~~~~~l~~l~v~~~~~~~~~l~---~~p~~~l-~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~ 863 (1232)
.+.++.++.++.|+..+|.+.++ .+|.+.+ ...+.+++.+.++ ....+.+...+...|.+.+++|+|+|+.|
T Consensus 271 R~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~----~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E 346 (716)
T KOG0058|consen 271 RNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSK----QTQDALARANQVAEEVLSAMRTVRSFAAE 346 (716)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhHHHhhhh
Confidence 99999999999999999998765 3344333 3334444444444 44455566677888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 000904 864 DRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQ 942 (1232)
Q Consensus 864 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~ 942 (1232)
++..+++.+.++...+...+...+.--+.-..++........+. ....+...|.+++|.+..++.|...+...+.++-.
T Consensus 347 ~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~ 426 (716)
T KOG0058|consen 347 EQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSS 426 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777666654333222211111111112222222222221 22344557899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECC
Q 000904 943 NQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGR 1021 (1232)
Q Consensus 943 ~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGr 1021 (1232)
.+.++.....+.+|+.++++.++.-+.. ....|. ...|.|+|+||+|.|+.. ..+||||+||+|+|||.||+|||
T Consensus 427 ~ys~lmkgvGAs~rvFel~dr~P~i~~~---G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGP 502 (716)
T KOG0058|consen 427 FYSELMKGVGASERVFELMDRKPRIPLT---GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGP 502 (716)
T ss_pred HHHHHHHhcchHHHHHHHhccCCCCCCC---Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECC
Confidence 9999999999999999999876543321 212222 467999999999999532 23699999999999999999999
Q ss_pred CCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcC
Q 000904 1022 TGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCH 1100 (1232)
Q Consensus 1022 tGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~ 1100 (1232)
|||||||++++|.|+|+|++|+|++||+||++++.+.||++||+|.|||+||+|||+|||.... ..+||||.+|.++++
T Consensus 503 SGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~AN 582 (716)
T KOG0058|consen 503 SGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMAN 582 (716)
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999997433 579999999999999
Q ss_pred CcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecC
Q 000904 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHR 1180 (1232)
Q Consensus 1101 L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHr 1180 (1232)
.++||.++|+|+||.|||+|.+|||||||||||||||+|||+|||||||||+||.++|..+|++|.+..+++|||+||||
T Consensus 583 ah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHR 662 (716)
T KOG0058|consen 583 AHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHR 662 (716)
T ss_pred hHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHhh
Q 000904 1181 IPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSH 1225 (1232)
Q Consensus 1181 l~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~~ 1225 (1232)
|+||+.+|+|+|+++|+|+|.|+|+||+++++|.|++|+++....
T Consensus 663 LSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 663 LSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred hhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999976543
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=6.5e-78 Score=742.73 Aligned_cols=509 Identities=27% Similarity=0.401 Sum_probs=438.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
..+.+.++...++.++|.+.....+.+....+-.++++++++.|++||.++++|++++|+. |++.+...+.......+.
T Consensus 198 ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~ii 276 (709)
T COG2274 198 IGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLII 276 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3445556677888999999999999999999999999999999999999999999999986 566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHH
Q 000904 789 ATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 868 (1232)
Q Consensus 789 ~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~ 868 (1232)
.....+..++++.+++|+++++.+..+.++..+.-...+..|+..+..-...+...++..|++.|+.|+|+.+.|.++..
T Consensus 277 D~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~ 356 (709)
T COG2274 277 DLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRS 356 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHH
Confidence 77777788888999999988765544444443333333333333333334445567789999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 869 KNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 869 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~-~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
++.+..++..+..+.......+......++..+......++ +..+..|.++.|.+-.+.+....+.+++..+++.+.++
T Consensus 357 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~ 436 (709)
T COG2274 357 QWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDF 436 (709)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99998888887777776666666655555554443333332 33445789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
.....+.+|+.+.++.|+|.+. +..+...|+..|+|+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||
T Consensus 437 q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKS 513 (709)
T COG2274 437 QQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKS 513 (709)
T ss_pred HHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHH
Confidence 9999999999999999888543 2223344567899999999999999888999999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHH
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVR 1106 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~ 1106 (1232)
||+|+|.|+|+|++|+|++||+|+++++++++|++|+|||||+.||+||||||+...+ +.+|||+++|++.+|.+++|.
T Consensus 514 TL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~ 593 (709)
T COG2274 514 TLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIE 593 (709)
T ss_pred HHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998665 467899999999999999999
Q ss_pred hhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000904 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1107 ~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~ 1186 (1232)
++|.||||.++|+|.|||||||||++|||||+++|+||||||||||||++||+.|.+.|.+...++|+|+||||++++++
T Consensus 594 ~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 594 NLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1187 CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1187 ~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
||||+|||+|||+|+|+|+||++. +|.|+++++..
T Consensus 674 adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 674 ADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred ccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 999999999999999999999998 89999988753
No 11
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.6e-74 Score=718.64 Aligned_cols=504 Identities=28% Similarity=0.432 Sum_probs=409.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHH
Q 000904 713 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792 (1232)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~ 792 (1232)
++.+...++.+...+.....+.+...+++.++++++.+.|+++|+.++.|++++|+++|.+.++..+......+....+.
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~ 139 (567)
T COG1132 60 LLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILL 139 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 33334455555555666666688899999999999999999999999999999999999999987776664444446777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHH
Q 000904 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 793 ~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~ 872 (1232)
.++.+++++..+|.+.++......+.......+.+..++..+......+.+.+.+.|++.|.++||+|+.++...++..+
T Consensus 140 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~ 219 (567)
T COG1132 140 LIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEE 219 (567)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHH
Confidence 78888888888898776654443333333333433445555555666678999999999999999999999866555544
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYI 951 (1232)
Q Consensus 873 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~ 951 (1232)
..+...+..................+..+...... ........+.++.|.+..++.|...+..++..+......+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 299 (567)
T COG1132 220 ANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRAS 299 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333322211111111111111222222111111 11222335678899999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 952 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
.+.||+.++.+.+++... ...+ ..+..|+|+|+||+|+|++ .+++|+|+||+|++||++|||||||||||||++
T Consensus 300 ~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~ 373 (567)
T COG1132 300 AAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIK 373 (567)
T ss_pred HHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999999887554221 1111 2345688999999999975 357999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCC-CCHHHHHHHHHHcCCcHHHHhhcc
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQ-HTDQEIWEVLAKCHLGEAVREKEN 1110 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~-~sd~eI~~aL~~~~L~~~i~~~p~ 1110 (1232)
+|+|+++|++|+|.|||+||++++..+||++|++|||||.||+|||++||++..+ .+|||+++|++.++++|++.++|+
T Consensus 374 LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~ 453 (567)
T COG1132 374 LLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPD 453 (567)
T ss_pred HHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999999999998765 799999999999999999999999
Q ss_pred CCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeE
Q 000904 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMV 1190 (1232)
Q Consensus 1111 gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrV 1190 (1232)
||||.|||+|.+||||||||+|||||++++|+|||||||||++|++||+.|++.+++..+++|+|+||||++++++||+|
T Consensus 454 g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~I 533 (567)
T COG1132 454 GYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRI 533 (567)
T ss_pred cccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999877889999999999999999999
Q ss_pred EEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1191 LAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1191 lVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
+|||+|+|+|+|+|+||+++ +|.|++|+++..
T Consensus 534 iVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 534 IVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred EEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999999997 899999998765
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.4e-73 Score=707.60 Aligned_cols=506 Identities=19% Similarity=0.243 Sum_probs=400.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
+.++.++..++.+.+.+.....+.+...+++.++++++++.|.++|+..++|++++|+++|++.++......+..++...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~ 148 (588)
T PRK11174 69 LILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAV 148 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777777778888899999999999999999999999999999999999999999988777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~ 870 (1232)
+..+..+++++..+|.+.++.+....+.......+.+..++..+......+...+++.|.++|+.+||+|+.++++.+++
T Consensus 149 ~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~ 228 (588)
T PRK11174 149 LVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESI 228 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHH
Confidence 77778888888889887655433333333333333344444444444455678889999999999999999999988887
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHH---------HHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFI---------GMALSYGLSLNSSLVMS 940 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~---------gl~l~~~~~l~~~l~~~ 940 (1232)
.+..+...+..........+.......+..+..... ....... .|.++.|.+ -.++.+...+..++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l 307 (588)
T PRK11174 229 RSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDL 307 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHH
Confidence 666555443332222221112222222222211111 1111111 244555432 12224455667778888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEEC
Q 000904 941 IQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVG 1020 (1232)
Q Consensus 941 v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVG 1020 (1232)
...+..+.....+.+|+.++.+.|++.+.. ...+. ..+..+.|+|+||+|.|.++ +++|+|+||+|++||++||||
T Consensus 308 ~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~-~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG 383 (588)
T PRK11174 308 GTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL-ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVG 383 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc-CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEEC
Confidence 888888999999999999998776543211 11111 11234679999999887654 579999999999999999999
Q ss_pred CCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHc
Q 000904 1021 RTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKC 1099 (1232)
Q Consensus 1021 rtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~ 1099 (1232)
+||||||||+++|.|++ |++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||.... +.+|+|+++|++.|
T Consensus 384 ~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a 462 (588)
T PRK11174 384 PSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENA 462 (588)
T ss_pred CCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHh
Confidence 99999999999999999 99999999999999999999999999999999999999999998763 58999999999999
Q ss_pred CCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEec
Q 000904 1100 HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAH 1179 (1232)
Q Consensus 1100 ~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAH 1179 (1232)
++++++.++|+||||.+||+|.+||||||||++||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+|||
T Consensus 463 ~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItH 542 (588)
T PRK11174 463 WVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH 542 (588)
T ss_pred CHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1180 RIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1180 rl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|++++.+||+|+||++|+++|.|+|++|+++ ++.|+++++...
T Consensus 543 rl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 543 QLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred ChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 9999999999999999999999999999986 689999987654
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.7e-73 Score=717.24 Aligned_cols=500 Identities=24% Similarity=0.340 Sum_probs=412.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
+.++.++..++...+.......+.+...+++.++++++++.|++||++++.|++++|+++|++.++..+...+...+...
T Consensus 207 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~ 286 (711)
T TIGR00958 207 MCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNL 286 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777788888888999999999999999999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~ 870 (1232)
...++.+++++..+|++.++.+....+...+...+.+..++..+......+...+++.|+++|+.+||+|+.++++.+++
T Consensus 287 ~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~ 366 (711)
T TIGR00958 287 VMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRF 366 (711)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHH
Confidence 88888888899999988765443333333334444444444444444455567789999999999999999999988887
Q ss_pred HHHHHhcCCchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFA---ANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~---~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
.+..++..+....... ...|....+..+..+.+... .......|.+++|.+..++.|...+..++..+.....++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~--g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~ 444 (711)
T TIGR00958 367 KEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYY--GGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGM 444 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665443322211 12222222222222211111 122334788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCCh
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGK 1026 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGK 1026 (1232)
.+...+.+|+.++++.+++.+.. .. ...++..|.|+|+||+|+|+.+ .+++|+|+||+|++||++||||+|||||
T Consensus 445 ~~~~~a~~ri~~~l~~~~~~~~~---~~-~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGK 520 (711)
T TIGR00958 445 MQAVGASEKVFEYLDRKPNIPLT---GT-LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGK 520 (711)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCC---CC-CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCH
Confidence 99999999999999876543221 11 1123456789999999999643 3579999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCC-CCCCHHHHHHHHHHcCCcHHH
Q 000904 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1027 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i 1105 (1232)
|||+++|.|+++|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||... .+.+|++++++++++++++++
T Consensus 521 STLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i 600 (711)
T TIGR00958 521 STVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFI 600 (711)
T ss_pred HHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999854 357899999999999999999
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
+++|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.|++ ....+++|+|+||||++++.
T Consensus 601 ~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~ 678 (711)
T TIGR00958 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVE 678 (711)
T ss_pred HhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 33457899999999999999
Q ss_pred hcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHH
Q 000904 1186 DCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1186 ~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
.||+|+||++|+|+|.|+|+||+++ ++.|++|+
T Consensus 679 ~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 679 RADQILVLKKGSVVEMGTHKQLMED-QGCYKHLV 711 (711)
T ss_pred hCCEEEEEECCEEEEeeCHHHHHhC-CCchHhcC
Confidence 9999999999999999999999986 67898874
No 14
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.4e-72 Score=713.64 Aligned_cols=504 Identities=25% Similarity=0.371 Sum_probs=413.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
..++++.++..++.+.+.+.....+.+....++.++++++++.|++||++.+.|++++|+. |.+.+...+...+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~ 258 (686)
T TIGR03797 180 LALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLL 258 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 3344455566777888888888899999999999999999999999999999999999997 677777666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHH
Q 000904 789 ATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 868 (1232)
Q Consensus 789 ~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~ 868 (1232)
.....+..+++++..+|++.++.+....+...+...+.+..+...+......+...+++.|++.|+.+||+++.++++.+
T Consensus 259 ~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 338 (686)
T TIGR03797 259 SGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFA 338 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHH
Confidence 55556667777888888877654433333332222222222333333333445678899999999999999999999888
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 869 KNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 869 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
++.+..+...+..+.......|.......+..+..... .+.......|.++.|.+..+..+...+..++..+...+.++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~ 418 (686)
T TIGR03797 339 RWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISI 418 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776665555444444444433333322222211 11222334788999998888888889999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
.....+.+|+.++++.|+|.+. +..++ .+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||
T Consensus 419 ~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKS 493 (686)
T TIGR03797 419 LAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKS 493 (686)
T ss_pred HHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHH
Confidence 9999999999999887665421 11111 123578999999999976667899999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHh
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVRE 1107 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~ 1107 (1232)
||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||....+.+|+|++++++.+++++++.+
T Consensus 494 TLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~ 573 (686)
T TIGR03797 494 TLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRA 573 (686)
T ss_pred HHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987766899999999999999999999
Q ss_pred hccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhc
Q 000904 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1108 ~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~ 1187 (1232)
+|.|+||.++|+|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++. ++|+|+||||++++.++
T Consensus 574 lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~ 651 (686)
T TIGR03797 574 MPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNA 651 (686)
T ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999975 68999999999999999
Q ss_pred CeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1188 TMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1188 DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
|+|+||++|+++|.|+|++|+++ ++.|++|+++
T Consensus 652 D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 652 DRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHh
Confidence 99999999999999999999985 7999999874
No 15
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-71 Score=695.32 Aligned_cols=503 Identities=24% Similarity=0.379 Sum_probs=409.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
++++.++..++.+.+.+.....+.+...+++.++++++++.|.++|+..+.|++++|+.+|.+.++......+..++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566677777777888888999999999999999999999999999999999999999988887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVS---IPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFF 867 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~---~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~ 867 (1232)
...+..++++...+|.+.++. .|+.++... .+....+...+..........+++.|.+.|+.+||+|+.++++.
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~ 227 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMV---IYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFG 227 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHH
Confidence 777778788888888765543 233322222 22222233333333345667888999999999999999999888
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 868 AKNLDLIDTNASPFFQTFAANEWL-IQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCT 946 (1232)
Q Consensus 868 ~~~~~~~d~~~~~~~~~~~~~~wl-~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~ 946 (1232)
+++.+..+...+..........+. ......+..+..............|.++.|.+..+..|...+..++..+...+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~ 307 (592)
T PRK10790 228 ERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSM 307 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665554333222221111111 1111222221111111111112478899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCCh
Q 000904 947 LANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1026 (1232)
Q Consensus 947 ~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGK 1026 (1232)
+++...+.+|+.++.+.+++++.. . ..++..+.|+++|++|+|+++ +++|+|+||+|++||++||||+|||||
T Consensus 308 ~~~~~~s~~ri~~~l~~~~~~~~~---~---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGK 380 (592)
T PRK10790 308 LQQAVVAGERVFELMDGPRQQYGN---D---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGK 380 (592)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCC---C---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCH
Confidence 999999999999998765442211 1 112345789999999999743 569999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHH
Q 000904 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR 1106 (1232)
Q Consensus 1027 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~ 1106 (1232)
|||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||.+|+||||+||..+++.+|++++++++++|+++++.
T Consensus 381 STLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~ 460 (592)
T PRK10790 381 STLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELAR 460 (592)
T ss_pred HHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred hhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000904 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1107 ~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~ 1186 (1232)
++|+||||.++|+|.+||||||||++|||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..
T Consensus 461 ~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~ 540 (592)
T PRK10790 461 SLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE 540 (592)
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988789999999999999999
Q ss_pred cCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHh
Q 000904 1187 CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1187 ~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~ 1224 (1232)
||+|++|++|+++|.|+|++|+++ ++.|++|+++...
T Consensus 541 ~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 541 ADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred CCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhh
Confidence 999999999999999999999987 6999999986643
No 16
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.6e-72 Score=712.26 Aligned_cols=507 Identities=21% Similarity=0.285 Sum_probs=416.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
..+.++.++..++.+.+.+.....+.+....++.++++++++.|+++|+..+.|++++|+..| ..+...+...+...+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~ 276 (710)
T TIGR03796 198 LGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTAL 276 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHH
Confidence 334445556677788888888889999999999999999999999999999999999999988 4566556666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHH
Q 000904 789 ATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 868 (1232)
Q Consensus 789 ~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~ 868 (1232)
.....+..+++++..+|++.++.+..+.+...+...+.+..++..+......+...+++.|+++|+.+||+++.++.+.+
T Consensus 277 ~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~ 356 (710)
T TIGR03796 277 DAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFS 356 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHH
Confidence 77777778888888898887765544444444444444444444444444556678899999999999999999999888
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 869 KNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 869 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
++.+..+...+..........+.......+..+..... .+.......|.++.|.+..+..+...+..++..+.....++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~ 436 (710)
T TIGR03796 357 RWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTL 436 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766555444433333333333332222222211111 11223334788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCC--C-CCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCC
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVED--N-RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1024 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~--~-~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGS 1024 (1232)
.....+.+|+.++++.|+|.+..... . ...+.++..|.|+++||+|+|+++.+++|+|+||+|++||++||||+|||
T Consensus 437 ~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGs 516 (710)
T TIGR03796 437 QELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGS 516 (710)
T ss_pred HHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCC
Confidence 99999999999999877664321100 0 01111344688999999999987667899999999999999999999999
Q ss_pred ChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcH
Q 000904 1025 GKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGE 1103 (1232)
Q Consensus 1025 GKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~ 1103 (1232)
|||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||||.+|+||||+||..++ +.+|++++++++.+++++
T Consensus 517 GKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~ 596 (710)
T TIGR03796 517 GKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHD 596 (710)
T ss_pred CHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999999998764 579999999999999999
Q ss_pred HHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhh
Q 000904 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPT 1183 (1232)
Q Consensus 1104 ~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~t 1183 (1232)
++.++|.|+||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.|.+.|++ .++|+|+||||+++
T Consensus 597 ~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~ 674 (710)
T TIGR03796 597 VITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLST 674 (710)
T ss_pred HHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 58999999999999
Q ss_pred hhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHH
Q 000904 1184 VMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1184 i~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
+.+||||+|||+|+++|.|+|++|+++ ++.|++|+
T Consensus 675 i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 675 IRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred HHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 999999999999999999999999986 78899886
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.7e-71 Score=706.43 Aligned_cols=501 Identities=23% Similarity=0.298 Sum_probs=405.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
+.++.++..++.+.+.+.....+.+...+++.++++++++.|+.+|++.+.|++++|++ |...+...........+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~ 280 (708)
T TIGR01193 202 LIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDM 280 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHH
Confidence 33344555667788888888889999999999999999999999999999999999998 66666655544444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~ 870 (1232)
...+..+++++..+|++.++.+..+.+.......+.+..++..+......+...+++.|++.|+.+||+++.++++.+++
T Consensus 281 ~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 360 (708)
T TIGR01193 281 WILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKI 360 (708)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHH
Confidence 55566666777788887665433333333333333344444444444555667888999999999999999999888877
Q ss_pred HHHHHhcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFAANEWLI---QRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~~~~wl~---~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
.+..+...+..+.......+.. ..+..+..+.+... .......|.+++|.+..+..+...+..++..+...+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~--g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~ 438 (708)
T TIGR01193 361 DSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWT--GAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKL 438 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554433332222221111 11111112111111 223334789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
.....+++|+.++++.|+|.+... .....++..|.|+++||+|+|++ .+++|+|+||+|++||++||||+||||||
T Consensus 439 ~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKS 514 (708)
T TIGR01193 439 QAARVANNRLNEVYLVDSEFINKK---KRTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKS 514 (708)
T ss_pred HHHHHHHHHHHHHHcCCCcccccc---cccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHH
Confidence 999999999999998776643211 11122345688999999999964 45799999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCC--CCCCHHHHHHHHHHcCCcHHH
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL--SQHTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~--~~~sd~eI~~aL~~~~L~~~i 1105 (1232)
||+++|+|+++|++|+|++||+|+++++.+++|++|+||||||.+|+|||||||... .+.+|++++++++.+++++++
T Consensus 515 TLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i 594 (708)
T TIGR01193 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDI 594 (708)
T ss_pred HHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 357899999999999999999
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
.++|.||||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.+++.|++ .+++|+|+||||++++.
T Consensus 595 ~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~~~T~IiitHr~~~~~ 673 (708)
T TIGR01193 595 ENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAK 673 (708)
T ss_pred HhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-hcCCEEEEEecchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 47899999999999999
Q ss_pred hcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1186 DCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1186 ~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
.||+|+||++|+++|.|+|++|+++ ++.|++|++
T Consensus 674 ~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 674 QSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred cCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 9999999999999999999999986 689999875
No 18
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.9e-73 Score=702.55 Aligned_cols=513 Identities=22% Similarity=0.312 Sum_probs=407.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHH
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI 784 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~ 784 (1232)
..+...|..+++...+..++........+.+...+++.+.++++++.++.|||.+..|++..|+++|+..++..+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 45566677788888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHH
Q 000904 785 FAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864 (1232)
Q Consensus 785 ~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~ 864 (1232)
.++......++.+++.++..|++.++..+...+.......+.+........+....+...+...|++.+++|+.+|+.|+
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 99999999999999999999999876544333332222222222222222223333445566789999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HhcCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 000904 865 RFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISS---AAFCM-VLLPPGTFTPGFIGMALSYGLSLNSSLVMS 940 (1232)
Q Consensus 865 ~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~---~~~~~-~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~ 940 (1232)
+..+++.+.++...+..... .-|.+......-.+.... ..++. .++..+..++|.+...+...+.-...+...
T Consensus 231 ~e~~ry~~~L~~~~k~gi~~---g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 231 KEIERYSKALENALKFGIKK---GLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 99998888777655433221 122222222111111111 11111 222234555554433333333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEE
Q 000904 941 IQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIV 1019 (1232)
Q Consensus 941 v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIV 1019 (1232)
......+.+...+..++.+.++..+..........+. -...|.|+|+||+|+|+.. ..++|+|+||+|++||.||+|
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~--~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valV 385 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVL--SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALV 385 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcccccCCcc--cccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEE
Confidence 4556667777888889988776433221111111111 1246999999999999532 236999999999999999999
Q ss_pred CCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHH
Q 000904 1020 GRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAK 1098 (1232)
Q Consensus 1020 GrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~ 1098 (1232)
|+|||||||++++|.|+|+|++|+|+|||.||.+++.++||++||+|.|||+||++||+||+.... +.+++|+.+|++.
T Consensus 386 G~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ 465 (1228)
T KOG0055|consen 386 GPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKA 465 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998655 4789999999999
Q ss_pred cCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Q 000904 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVA 1178 (1232)
Q Consensus 1099 ~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IA 1178 (1232)
++.++++..+|+|+||.+||+|.+||||||||+||||||+++|+||+||||||+||+++++.+|++|++..+|+|.|+||
T Consensus 466 ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVa 545 (1228)
T KOG0055|consen 466 ANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVA 545 (1228)
T ss_pred ccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1179 HRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1179 Hrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|||+||+++|+|+||++|+|+|.|+|+||++++ |.|++|++...
T Consensus 546 HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 546 HRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred eehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 999999999999999999999999999999986 99999998654
No 19
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.1e-71 Score=688.77 Aligned_cols=504 Identities=21% Similarity=0.298 Sum_probs=418.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHH
Q 000904 713 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792 (1232)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~ 792 (1232)
++.++..++.+.+.+.....+.+....++.++++++++.|..+|++...|++++|+++|++.+.......+..++...+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 73 GLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777778888889999999999999999999999999999999999999988777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHH
Q 000904 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 793 ~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~ 872 (1232)
.+..++++...+|.+.++.+..+.+.........+..++..+..........+++.|.+.|..+||+++.++++.+++.+
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 232 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHH
Confidence 88888888888888766544443333333333333333433444445567788999999999999999999998888877
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYI 951 (1232)
Q Consensus 873 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~-~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~ 951 (1232)
..+...+..........+.......+..+....... .......|.+++|.+..++++...+..++..+...+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T PRK11176 233 VSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655544443333333333333333322222111 1223346889999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 952 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
.+.+|+.++.+.+++.+.. ... ..|..+.|+++||+|+|+++.+++|+|+|++|++||++||||+||||||||++
T Consensus 313 ~~~~ri~~~~~~~~~~~~~---~~~--~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 313 AACQTLFAILDLEQEKDEG---KRV--IERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHhcCCCcCCCC---CcC--CCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 9999999998776553211 111 12345679999999999766678999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCC--CCCCHHHHHHHHHHcCCcHHHHhhc
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL--SQHTDQEIWEVLAKCHLGEAVREKE 1109 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~~p 1109 (1232)
+|+|+++|++|+|.+||+|+++++.+++|++++||||||.+|+||||+||... ++++|+|++++++.++++++++++|
T Consensus 388 ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp 467 (582)
T PRK11176 388 LLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_pred HHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999854 2479999999999999999999999
Q ss_pred cCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCe
Q 000904 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTM 1189 (1232)
Q Consensus 1110 ~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~Dr 1189 (1232)
+||||.++|+|.+||||||||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++.+||+
T Consensus 468 ~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~ 547 (582)
T PRK11176 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547 (582)
T ss_pred cccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999988789999999999999999999
Q ss_pred EEEEeCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1190 VLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1190 VlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
|++|++|+++|.|+|++|+++ ++.|++|+++.
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred EEEEECCEEEEeCCHHHHHhC-CChHHHHHHHH
Confidence 999999999999999999987 68999998754
No 20
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.4e-70 Score=677.84 Aligned_cols=502 Identities=20% Similarity=0.230 Sum_probs=400.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHH
Q 000904 714 IGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNA 793 (1232)
Q Consensus 714 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~ 793 (1232)
++++..++.+...+.....+.+...+++.++++++++.|..+|++.+.|++++|+++|++.++......+..++...+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~ 148 (574)
T PRK11160 69 AAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVI 148 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777788888999999999999999999999999999999999999999988877777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHH
Q 000904 794 YSNLGVLAVVTWQVLFVSIPVI-FLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 794 l~~l~v~~~~~~~~~l~~~p~~-~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~ 872 (1232)
+..+++++..+|.+.++....+ ++.......+.+..+...+......+.+.+.+.|.++|+.+||+|+.++++.+++.+
T Consensus 149 ~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 228 (574)
T PRK11160 149 LVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQ 228 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHH
Confidence 8888889999998876542222 111222222333333333444445567788999999999999999999988888777
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLS-LNSSLVMSIQNQCTLANYI 951 (1232)
Q Consensus 873 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~-l~~~l~~~v~~~~~~e~~~ 951 (1232)
..++..+..........+.......+..+..............|.++.|.+..++.|... ....+..+...........
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (574)
T PRK11160 229 TEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554443333332222222223332222221111111112567777776666555433 3345555556677778888
Q ss_pred HHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 952 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
.+.+|+.++.+.+++.+.. ...++ .+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||++
T Consensus 309 ~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ 384 (574)
T PRK11160 309 ASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384 (574)
T ss_pred HHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 9999999998876542211 01111 1335789999999999765457999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhcc
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKEN 1110 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~ 1110 (1232)
+|.|+++|++|+|.+||+|+++++.+++|++++||||||.+|+|||++|+.... +.+|++++++++++++++++.+ |+
T Consensus 385 ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~ 463 (574)
T PRK11160 385 LLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DK 463 (574)
T ss_pred HHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-cc
Confidence 999999999999999999999999999999999999999999999999998654 5799999999999999999999 99
Q ss_pred CCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeE
Q 000904 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMV 1190 (1232)
Q Consensus 1111 gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrV 1190 (1232)
||||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++.+||+|
T Consensus 464 GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i 543 (574)
T PRK11160 464 GLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRI 543 (574)
T ss_pred ccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999887899999999999999999999
Q ss_pred EEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1191 LAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1191 lVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
++|++|+++|.|+|+||+++ ++.|++|++.
T Consensus 544 ~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred EEEeCCeEEEeCCHHHHHhc-CcHHHHHHhh
Confidence 99999999999999999986 7899998863
No 21
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.5e-70 Score=693.77 Aligned_cols=495 Identities=24% Similarity=0.306 Sum_probs=403.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHH
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~ 790 (1232)
+.++.++..++.+.+.+.....+.+...+++.++++++++.|++| +..+.|++++|+ +|.+.+...+...+...+...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~ 270 (694)
T TIGR03375 193 VALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDL 270 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Confidence 333445566777888888888999999999999999999999998 788999999999 799988877766655555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHH
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~ 870 (1232)
...+..+++++..+|.+.++.+..+.+.......+.+..++..+......+...+++.|++.|+.+||+|+.++++.+++
T Consensus 271 ~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 350 (694)
T TIGR03375 271 PFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRW 350 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHH
Confidence 66666677777888887665433333333333333333333333344455677889999999999999999999998888
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFAANEWLIQRLETLSATVIS-SAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 949 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~-~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~ 949 (1232)
.+..+...+..........+.......+..+... ...+.......|.+++|.+..+..+...+..++..+...+.++..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~ 430 (694)
T TIGR03375 351 EQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQ 430 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655444333332222222222222211111 111112233478899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHH
Q 000904 950 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1029 (1232)
Q Consensus 950 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTL 1029 (1232)
...+.+|+.++++.++|.+... ......+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||
T Consensus 431 ~~~~~~ri~~il~~~~e~~~~~---~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTL 507 (694)
T TIGR03375 431 AKTALQSLDELMQLPVERPEGT---RFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTL 507 (694)
T ss_pred HHHHHHHHHHHHcCCCCCCCCC---CCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHH
Confidence 9999999999998776543211 1111113457899999999997656679999999999999999999999999999
Q ss_pred HHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhh
Q 000904 1030 IGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREK 1108 (1232)
Q Consensus 1030 l~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~ 1108 (1232)
+++|+|+|+|++|+|.+||+|+++++.+++|++++||||||.+|+|||||||.... +.+|+|++++++.+++++++.++
T Consensus 508 lklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l 587 (694)
T TIGR03375 508 LKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRH 587 (694)
T ss_pred HHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998765 48999999999999999999999
Q ss_pred ccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcC
Q 000904 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCT 1188 (1232)
Q Consensus 1109 p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~D 1188 (1232)
|.||||.++|+|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||
T Consensus 588 p~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D 667 (694)
T TIGR03375 588 PDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD 667 (694)
T ss_pred cccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred eEEEEeCCEEEEecChhHHHhh
Q 000904 1189 MVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1189 rVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+|+||++|+++|.|+|+||+++
T Consensus 668 ~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 668 RIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999875
No 22
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.2e-69 Score=673.46 Aligned_cols=507 Identities=23% Similarity=0.340 Sum_probs=433.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHH
Q 000904 710 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGA 789 (1232)
Q Consensus 710 v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~ 789 (1232)
.+.++.+...++.+.+.+.....+.+....++..+++++++.|.++|++.+.|++++|+++|++.++......+..++..
T Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~ 138 (571)
T TIGR02203 59 VVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRE 138 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677778888888889999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHH
Q 000904 790 TTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK 869 (1232)
Q Consensus 790 ~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~ 869 (1232)
....+..+++++..+|++.++.+....+.......+.+..++..+......+...+.+.|.++|+.+||+++.++++.++
T Consensus 139 ~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 218 (571)
T TIGR02203 139 TLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRR 218 (571)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence 88889999999999999888766666665555556666556666666666778889999999999999999999998888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 870 NLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLA 948 (1232)
Q Consensus 870 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e 948 (1232)
+.+..+...+..........+.......+..+..... .+.......|.+++|.+..+..+...+..++..+......+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~ 298 (571)
T TIGR02203 219 FDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQ 298 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777776655444433333333333333322222211 112223347889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHH
Q 000904 949 NYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1028 (1232)
Q Consensus 949 ~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKST 1028 (1232)
+...+.+|+.++.+.+++.+.. ..+.. +..+.|+++||+|+|+++.+++|+|+||+|++||+++|+|+|||||||
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKST 373 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKST 373 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHH
Confidence 9999999999998766553211 11111 234689999999999765567999999999999999999999999999
Q ss_pred HHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC--CCCHHHHHHHHHHcCCcHHHH
Q 000904 1029 LIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS--QHTDQEIWEVLAKCHLGEAVR 1106 (1232)
Q Consensus 1029 Ll~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~--~~sd~eI~~aL~~~~L~~~i~ 1106 (1232)
|+++|.|+++|++|+|.+||+|+++++.+++|++++|+||||.+|+||||+||..+. +.+|++++++++++++++++.
T Consensus 374 Ll~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~ 453 (571)
T TIGR02203 374 LVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVD 453 (571)
T ss_pred HHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHH
Confidence 999999999999999999999999999999999999999999999999999998664 589999999999999999999
Q ss_pred hhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000904 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1107 ~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~ 1186 (1232)
++|+||||.++|+|.+||||||||+|||||++++|+||+||||||+||.+|++.|.+.|++..+++|+|+||||++.+..
T Consensus 454 ~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~ 533 (571)
T TIGR02203 454 KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK 533 (571)
T ss_pred hCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1187 CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1187 ~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
||+|++|++|+++|.|+|++++++ ++.|++++++.
T Consensus 534 ~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 534 ADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred CCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHh
Confidence 999999999999999999999986 68999887754
No 23
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-69 Score=624.26 Aligned_cols=512 Identities=22% Similarity=0.284 Sum_probs=405.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHH
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI 784 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~ 784 (1232)
..+++..++..++..+....+.......+.+....+++++++++.+.+..+-...|.|+....+.+.++.++..+...+.
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666777777777778888889999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcc
Q 000904 785 FAVGATTNAYSNLGVLAVVTWQVLF---VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 861 (1232)
Q Consensus 785 ~~~~~~~~~l~~l~v~~~~~~~~~l---~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~ 861 (1232)
....+.+..+..++.++..+|.-.+ +..|++.+++.+-..- ++...+..-.+-..+.+||.|.++|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~---a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLA---AKDASEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 7778888888888888888887544 4567776665443221 122222222334568899999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-CCcchHHHHHHHHHHHHHHHHHHH
Q 000904 862 EEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVL-LPP-GTFTPGFIGMALSYGLSLNSSLVM 939 (1232)
Q Consensus 862 ~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~-~~~-g~~~~g~~gl~l~~~~~l~~~l~~ 939 (1232)
..+...++..+.-.+..+..........--...+|++...-+..++++... ... |.++-...-+++-.+.-+..++..
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 877665554443333322222222222222334555555444444443221 113 555554444455555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEE
Q 000904 940 SIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIV 1019 (1232)
Q Consensus 940 ~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIV 1019 (1232)
+-..+....+...+.+.+..+.+.|.+.+...+ .....|....+++.+|++++|+++. ++++|+||++++|+++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 777777777888888999999887765433211 1122232234566779999997654 7999999999999999999
Q ss_pred CCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCC-CCHHHHHHHHHH
Q 000904 1020 GRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQ-HTDQEIWEVLAK 1098 (1232)
Q Consensus 1020 GrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~-~sd~eI~~aL~~ 1098 (1232)
|+||||||||+++|.|+.+|++|+|.+||+|+.+++.+++|+++++|||+|++|+||||+||...+. .+|+||++++++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987664 789999999999
Q ss_pred cCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Q 000904 1099 CHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVA 1178 (1232)
Q Consensus 1099 ~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IA 1178 (1232)
+++.+++.. |+|||+.++|+|.+|||||+||++||||++++++++++||||||||.|||+.|++.|.+.++++|||+||
T Consensus 434 a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~it 512 (559)
T COG4988 434 AGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512 (559)
T ss_pred hcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHHh
Q 000904 1179 HRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1179 Hrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~~ 1224 (1232)
||++.+.++|+|+|||+|+++|.|+|++|.++ ++.|++|+++...
T Consensus 513 Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 513 HRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred cChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 99999999999999999999999999999986 7999999987653
No 24
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.8e-69 Score=682.44 Aligned_cols=508 Identities=24% Similarity=0.329 Sum_probs=415.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
..+.++.++..++.+.+.+.....+.+....++.++++++++.|+.+|++.+.|++++|+ +|.+.+...+...+...+.
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~ 261 (694)
T TIGR01846 183 LAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVL 261 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence 334455556677788888888889999999999999999999999999999999999999 6998888776665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHH
Q 000904 789 ATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 868 (1232)
Q Consensus 789 ~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~ 868 (1232)
.....+..+++++..+|.+.++.+..+++...+.....+..++..+......+...+++.|++.|+.+||+++.++++.+
T Consensus 262 ~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~ 341 (694)
T TIGR01846 262 DLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQN 341 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHH
Confidence 55555556777888888877654433333333222222222222233333445677899999999999999999999988
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 869 KNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 947 (1232)
Q Consensus 869 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~ 947 (1232)
++.+..+...+..........+.......+..+...... +.......|.++.|.+..+..+...+..++..+...+.++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~ 421 (694)
T TIGR01846 342 RWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDF 421 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777765554444433333333333333222221111 1122334688999999989999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChH
Q 000904 948 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 948 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKS 1027 (1232)
.....+.+|+.++++.|+|.+.. ...+.+ +..|.|+++||+|+|+++.+++|+|+||+|++||++||||+||||||
T Consensus 422 ~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKS 497 (694)
T TIGR01846 422 QQTGIALERLGDILNSPTEPRSA--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKS 497 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCccCC--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHH
Confidence 99999999999999877654321 111111 23578999999999987666799999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHH
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVR 1106 (1232)
Q Consensus 1028 TLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~ 1106 (1232)
||+++|.|+++|++|+|.+||+|+++++.+++|++++||||||.+|+||||+||...+ +.++++++++++.+++++++.
T Consensus 498 TL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~ 577 (694)
T TIGR01846 498 TLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFIS 577 (694)
T ss_pred HHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998654 578999999999999999999
Q ss_pred hhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh
Q 000904 1107 EKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1107 ~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~ 1186 (1232)
++|.||||.++++|.+||||||||++||||++++|+|||||||||+||.+|++.+.+.|++..+++|+|+||||++++..
T Consensus 578 ~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ 657 (694)
T TIGR01846 578 ELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA 657 (694)
T ss_pred hCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988789999999999999999
Q ss_pred cCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1187 CTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1187 ~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
||+|++|++|+++|.|+|++|+++ ++.|++|+++.
T Consensus 658 ~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 658 CDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred CCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 999999999999999999999986 69999998753
No 25
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-71 Score=612.03 Aligned_cols=503 Identities=21% Similarity=0.339 Sum_probs=387.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000904 719 TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG 798 (1232)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~ 798 (1232)
.++.-+|.++.+-...-+.+.+-.++++++......|.-....|+++.-+.+..+.+.. +......+.-....+...++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvtl-l~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTL-LEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhhH-HHHHHhhcccHHHHhhhhhh
Confidence 44555666666667777888999999999999999999999999988877666555441 11111111111111111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHH
Q 000904 799 -VLAVVTWQVLFVSIPVIFLAIRLQ----RYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDL 873 (1232)
Q Consensus 799 -v~~~~~~~~~l~~~p~~~l~~~~~----~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~ 873 (1232)
.....+|++.+++..+..++.... ..--+..|.+..-+.+ -...-.+++-+..|++-|+.++.-.+++.+.
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~ne----srAr~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNE----SRARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhh----hhhhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 122346666665555444443221 1111112222222222 2344568889999999999999988999888
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 874 IDTNASPFFQTFAANEWLIQRLETLSATVIS-SAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII 952 (1232)
Q Consensus 874 ~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~-~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~ 952 (1232)
++.+++.-++....-..+...-+.+..+... .+.+.+..+..+..+.|-.-+..+|.+++.++++|+-..+-.++++.+
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfi 507 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFI 507 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhh
Confidence 8887765444333322222211111111111 122223333467788888889999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHH
Q 000904 953 SVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGA 1032 (1232)
Q Consensus 953 sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~ 1032 (1232)
-.|++.+.++.++|- .+....++-.-.+|.|+|+||+|.|.|+. +||+||||++.||+.+|+|||||+||||++++
T Consensus 508 DmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvtF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRl 583 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVTFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRL 583 (790)
T ss_pred hHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeEEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHH
Confidence 999999988654442 22111122223479999999999998865 69999999999999999999999999999999
Q ss_pred HhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1033 LFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1033 L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
|+|+++.++|+|.|||+||+.+..+.||++||+||||.+||++||.+||.... ..+|||+.+|.+.++++|.|...|+|
T Consensus 584 LfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPeg 663 (790)
T KOG0056|consen 584 LFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEG 663 (790)
T ss_pred HHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchh
Confidence 99999999999999999999999999999999999999999999999998543 47999999999999999999999999
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
++|.|||+|-.||||||||+|+||++||+|.|++||||||+||..||+.||.+|.+..+++|.|+||||++||.++|.|+
T Consensus 664 Y~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~IL 743 (790)
T KOG0056|consen 664 YNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLIL 743 (790)
T ss_pred hhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHHhhcCCHHHHHHH-HHHhhhhccc
Q 000904 1192 AISDGKLAEYDEPMKLMKREGSLFGQLVR-EYWSHLHSAE 1230 (1232)
Q Consensus 1192 VL~~G~vvE~g~p~~Ll~~~~~~f~~l~~-~~~~~~~~~~ 1230 (1232)
|+++|+|+|.|+|+||+.+++|.|++|++ +.+..+.+..
T Consensus 744 vi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g~ts~d 783 (790)
T KOG0056|consen 744 VISNGRIVERGRHEELLKRDGGAYADMWQAQQAMGKTSAD 783 (790)
T ss_pred EEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcCccccc
Confidence 99999999999999999999999999995 4444444333
No 26
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-68 Score=606.57 Aligned_cols=505 Identities=23% Similarity=0.320 Sum_probs=374.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHH
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI 784 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~ 784 (1232)
...+..|.+..+++.+|..++...+.....+.-+....+.+.+.++..+++|.+..+|.+-+.+......+...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999998888777666555444433322222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchH
Q 000904 785 FAVGATTNAYSNLG-VLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 863 (1232)
Q Consensus 785 ~~~~~~~~~l~~l~-v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~ 863 (1232)
.++...+.+..... +..-..+.+.++.......|..+.-....-....++.-..+.....+...|++.+-.+||.|+.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 22222221111111 11112222332222222222111000000011112222333344556778999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----cCCCCcchHHHHHHHHHHHHHHHHHH
Q 000904 864 DRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAF-CMVL----LPPGTFTPGFIGMALSYGLSLNSSLV 938 (1232)
Q Consensus 864 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~-~~~~----~~~g~~~~g~~gl~l~~~~~l~~~l~ 938 (1232)
++-.+++...+....+...... .|+.+ +++....++.+... .+++ ...+.++.|..-+..+...++..++.
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~---~sl~~-lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~ 309 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYS---SSLAF-LNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLN 309 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHH---hHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHH
Confidence 9888887776665544332222 22221 22222222211111 1111 23456777777777777778888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEE
Q 000904 939 MSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGI 1018 (1232)
Q Consensus 939 ~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgI 1018 (1232)
.+-..+.++..++.-.+-+....+. +.. ..+. +++--+..|.|+|+||+|.|.|+ +++|+|+||+|++||||||
T Consensus 310 ~Lg~vyr~~~q~l~Dm~~~~~l~~~--~~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaI 383 (591)
T KOG0057|consen 310 FLGSVYRELRQALTDMRTLFILLEV--DED--IQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAI 383 (591)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh--hhh--hhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEEE
Confidence 7777777776666555444332111 110 1111 11112345789999999999865 4699999999999999999
Q ss_pred ECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHH
Q 000904 1019 VGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLA 1097 (1232)
Q Consensus 1019 VGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~ 1097 (1232)
||+|||||||++++|+|+++ ++|+|+|||+||++++++.+|+.||+||||..||++||.+|+...+ ..+|||+.++++
T Consensus 384 vG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k 462 (591)
T KOG0057|consen 384 VGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACK 462 (591)
T ss_pred ECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999999999999998554 479999999999
Q ss_pred HcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 000904 1098 KCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITV 1177 (1232)
Q Consensus 1098 ~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~I 1177 (1232)
+++++|.+.++|+|++|.|||+|..||||||||++||||++|+|+|+++|||||+||.+||+.|.+.|.....++|+|+|
T Consensus 463 ~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~I 542 (591)
T KOG0057|consen 463 RAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMI 542 (591)
T ss_pred HcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred ecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1178 AHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1178 AHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
+||++++++||+|+++|+|+|+|+|+|+||++ +++.|+.++..
T Consensus 543 vH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 543 VHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred EecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 99999999999999999999999999999999 68888887754
No 27
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-68 Score=606.89 Aligned_cols=498 Identities=19% Similarity=0.261 Sum_probs=391.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHH
Q 000904 716 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYS 795 (1232)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~ 795 (1232)
+...+.-+...+..-....+.-..++.++++++...+..-......|+++||+..|++.+|...-..+...+........
T Consensus 69 I~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~ 148 (573)
T COG4987 69 ILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAV 148 (573)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHH
Confidence 33344444444444455566777889999999988877777888999999999999999998776666666666665555
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHH
Q 000904 796 NLGVLAVVTWQVLFVSI-PVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLI 874 (1232)
Q Consensus 796 ~l~v~~~~~~~~~l~~~-p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~ 874 (1232)
..+.....+|.+.+... -+.++...+.-.+.+..+...+.-...+..+.+++.|.+.|....+.||.++++.+......
T Consensus 149 ~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e 228 (573)
T COG4987 149 VTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATE 228 (573)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHH
Confidence 66666666776654322 22222222222233334444444455677889999999999999999999999988877666
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000904 875 DTNASPFFQTFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSI-QNQCTLANYII 952 (1232)
Q Consensus 875 d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v-~~~~~~e~~~~ 952 (1232)
+...+..........|....+.++....+.. ..+.......|..+...+.+++--.+.....+.-+. ....++.....
T Consensus 229 ~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~ 308 (573)
T COG4987 229 ASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIA 308 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHH
Confidence 6655555566666677777666666665552 233333344565553222222222222223332222 34466777788
Q ss_pred HHHHHHhhccCCCCCCcccCCCCCCCCCCCcc-eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH
Q 000904 953 SVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG-KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 953 sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G-~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~ 1031 (1232)
|.+|+.+..+.++|.... . +.-|..+ .++++||+|+|+.+.+++|+|+||++++||||||+||||||||||++
T Consensus 309 Sa~Rl~~i~~q~~e~~~~---~---~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllq 382 (573)
T COG4987 309 SARRLNDILDQKPEVTFP---D---EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQ 382 (573)
T ss_pred HHHHHhhhccCCcccCCC---c---cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHH
Confidence 999999887766554321 1 1112222 79999999999888889999999999999999999999999999999
Q ss_pred HHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhcc
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKEN 1110 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~ 1110 (1232)
+|.|-++|++|+|..+|.+++.++-+++|+.|++++|.+.+|++|+|+||...+ +.||||+|++|+++||.+.+++.|+
T Consensus 383 Ll~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~ 462 (573)
T COG4987 383 LLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPD 462 (573)
T ss_pred HHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999999997544 5899999999999999999999999
Q ss_pred CCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeE
Q 000904 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMV 1190 (1232)
Q Consensus 1111 gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrV 1190 (1232)
||+|.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+.-+..||||
T Consensus 463 gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drI 542 (573)
T COG4987 463 GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRI 542 (573)
T ss_pred hhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1191 LAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1191 lVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
+|||+|+++|.|+|++|+++ +|.|++|.+
T Consensus 543 ivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 543 IVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred EEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 99999999999999999995 799999875
No 28
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.8e-67 Score=658.22 Aligned_cols=507 Identities=23% Similarity=0.349 Sum_probs=412.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHH
Q 000904 712 LLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATT 791 (1232)
Q Consensus 712 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~ 791 (1232)
+++.++..++.+.+.+.....+.+....++.++++++++.|.++|+....|++++|+++|.+.++......+...+...+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 144 (576)
T TIGR02204 65 LVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNAL 144 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445556677777778888999999999999999999999999999999999999999998877777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHH
Q 000904 792 NAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNL 871 (1232)
Q Consensus 792 ~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~ 871 (1232)
..++.+++++..+|++.++.+....+.......+.+..+...+..........+++.|.+.|..+||+++.++++.+++.
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~ 224 (576)
T TIGR02204 145 MCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFG 224 (576)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHH
Confidence 77788888888888876554333333332333333344444444445566778899999999999999999999887777
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 872 DLIDTNASPFFQTFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANY 950 (1232)
Q Consensus 872 ~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~ 950 (1232)
+..+...+..........+.......+....... ..+.......|.++.|.+..+..|...+..++..+...+.++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~ 304 (576)
T TIGR02204 225 GAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRA 304 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666544433333222233322222221111111 111122334788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCC-CccceeeeEEEeCCcEEEEECCCCCChHHH
Q 000904 951 IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDS-PLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1029 (1232)
Q Consensus 951 ~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~-~~vL~~vsl~I~~GekvgIVGrtGSGKSTL 1029 (1232)
..+.+|+.++.+.+++.+... ......+|..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||
T Consensus 305 ~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTL 382 (576)
T TIGR02204 305 AGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTL 382 (576)
T ss_pred HHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHH
Confidence 999999999987655422111 11111234456899999999997533 579999999999999999999999999999
Q ss_pred HHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhh
Q 000904 1030 IGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREK 1108 (1232)
Q Consensus 1030 l~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~ 1108 (1232)
+++|+|+++|++|+|.+||+|+++++.+++|++++|+||||.+|+||||+||.... +.+|++++++|+++++.+++.++
T Consensus 383 lklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l 462 (576)
T TIGR02204 383 FQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISAL 462 (576)
T ss_pred HHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998654 46899999999999999999999
Q ss_pred ccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcC
Q 000904 1109 ENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCT 1188 (1232)
Q Consensus 1109 p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~D 1188 (1232)
|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.+.+.|++..+++|+|+||||++.+..+|
T Consensus 463 ~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d 542 (576)
T TIGR02204 463 PEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKAD 542 (576)
T ss_pred CCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred eEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1189 MVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1189 rVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
+|++|++|+++|.|+|++++++ ++.|++|++.
T Consensus 543 ~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 543 RIVVMDQGRIVAQGTHAELIAK-GGLYARLARL 574 (576)
T ss_pred EEEEEECCEEEeeecHHHHHHc-CChHHHHHhh
Confidence 9999999999999999999885 7899998864
No 29
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.6e-67 Score=656.78 Aligned_cols=489 Identities=20% Similarity=0.273 Sum_probs=394.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 730 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLF 809 (1232)
Q Consensus 730 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l 809 (1232)
.....+....+..++++++++.|..+|++.+.|++++|+++|++.+.......+...+...+..+..++++...+|++.+
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 160 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSL 160 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566679999999999999999999999999999999887655555555555556666666677778888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 000904 810 VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANE 889 (1232)
Q Consensus 810 ~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 889 (1232)
+.+..+++...+...+.+..++..+......+...+++.|.+.|..+||+|+.++++.+++.+..+...+..........
T Consensus 161 ~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (588)
T PRK13657 161 VLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWA 240 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555666666666655566667888999999999999999999998877776665554433322222222
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 000904 890 WLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAP 968 (1232)
Q Consensus 890 wl~~rl~~~~~~~~~~-~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~ 968 (1232)
+..........+.... ..........|.+++|.+..++.+...+..++..+......+.....+.+|+.+..+.+.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 320 (588)
T PRK13657 241 LASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVR 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 2222122221111111 111223344788999999999999999999998888888888888899999998876544322
Q ss_pred cccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC
Q 000904 969 EVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 969 ~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG 1048 (1232)
.. ....+.. +..+.|+++||+|+|+++ +++|+|+|+++++||++||||+||||||||+++|+|+++|++|+|.+||
T Consensus 321 ~~--~~~~~~~-~~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g 396 (588)
T PRK13657 321 DP--PGAIDLG-RVKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396 (588)
T ss_pred CC--CCCCCcC-CCCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 11 1111111 234679999999999643 5699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1049 IDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1049 ~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
+|+++++.+++|++|+||||||.+|+||||+||.... +.+|++++++++.+++.+++.++|+|+||.++++|.+|||||
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 476 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGE 476 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHH
Confidence 9999999999999999999999999999999998653 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|||++||||++++|+|||||||||+||.+|++.|.+.|++..+++|+|+||||++.+..+|+|++|++|+++|.|+|++|
T Consensus 477 ~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l 556 (588)
T PRK13657 477 RQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDEL 556 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHH
Q 000904 1208 MKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1208 l~~~~~~f~~l~~~~~ 1223 (1232)
+++ ++.|++|+++..
T Consensus 557 ~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 557 VAR-GGRFAALLRAQG 571 (588)
T ss_pred HHC-CChHHHHHHHhh
Confidence 986 689999998654
No 30
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.6e-67 Score=651.68 Aligned_cols=509 Identities=21% Similarity=0.268 Sum_probs=402.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHH
Q 000904 709 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVG 788 (1232)
Q Consensus 709 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~ 788 (1232)
.+++++.++..++.+.+.+.....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+.......+..++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~ 119 (569)
T PRK10789 40 GTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVD 119 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444455556666666677788889999999999999999999999999999999999999987555555555555
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHH
Q 000904 789 ATTNAYSNLGVL-AVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFF 867 (1232)
Q Consensus 789 ~~~~~l~~l~v~-~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~ 867 (1232)
..+..+..++++ ...+|.+.++.+..+.+.......+.+..++..+......+.+.+++.|.+.|+.+||+|+.++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 199 (569)
T PRK10789 120 SLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQS 199 (569)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHH
Confidence 544444444444 4677776655433333333333333333333333334455678889999999999999999999988
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 868 AKNLDLIDTNASPFFQTFAANEWLIQRLETLSATV-ISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCT 946 (1232)
Q Consensus 868 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~-~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~ 946 (1232)
+++.+..+...+..........+............ +............|.++.|.+..+..|...+..++..+......
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~ 279 (569)
T PRK10789 200 ALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNI 279 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777665544333322222221111111111111 11111112233478899999988888988888888888888999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCCh
Q 000904 947 LANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1026 (1232)
Q Consensus 947 ~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGK 1026 (1232)
+.....+.+|+.++.+.+++.+. ...+.+ +..|.|+++|++|+|+++.+++|+|+||+|++||++||||+|||||
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGK 354 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVVKD---GSEPVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGK 354 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcccC---CCCCCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCH
Confidence 99999999999999876544221 111111 2346799999999997655679999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHH
Q 000904 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1027 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i 1105 (1232)
|||+++|.|+++|++|+|.+||+|+++++.+++|++++|+||||.+|+||+|+|+.... +.+|++++++++.+++++++
T Consensus 355 STLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i 434 (569)
T PRK10789 355 STLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDI 434 (569)
T ss_pred HHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998653 57999999999999999999
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
.++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||.++++.+.+.|++..+++|+|+||||++++.
T Consensus 435 ~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~ 514 (569)
T PRK10789 435 LRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT 514 (569)
T ss_pred HhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998778999999999999999
Q ss_pred hcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1186 DCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1186 ~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
.||+|++|++|+++|.|+|++|+++ ++.|++|++...
T Consensus 515 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 515 EASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred cCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 9999999999999999999999986 689999997544
No 31
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.5e-67 Score=651.62 Aligned_cols=464 Identities=23% Similarity=0.292 Sum_probs=373.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHH
Q 000904 715 GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794 (1232)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l 794 (1232)
.++..++.+...+.....+.+...+++.++++++++.|.++|++.++|++++|+++|++.++......+..++......+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~ 142 (529)
T TIGR02868 63 GIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGS 142 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777788888999999999999999999999999999999999999999888777777777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHH
Q 000904 795 SNLGVLAVVTWQVLFVSIPVIFLAIR-LQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDL 873 (1232)
Q Consensus 795 ~~l~v~~~~~~~~~l~~~p~~~l~~~-~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~ 873 (1232)
..+++++..+|.+.++.+..+.+... ....+.+..+...+......+...+++.|.++|+.+||+|+.++++.+++.+.
T Consensus 143 ~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~ 222 (529)
T TIGR02868 143 AAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAA 222 (529)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHH
Confidence 88888888999887765433333222 22223333333333334455778899999999999999999999988887776
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 874 IDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII 952 (1232)
Q Consensus 874 ~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~ 952 (1232)
.+...+..........+.......+..+..... .........|.++.|.+...+.|...+..++..+......+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (529)
T TIGR02868 223 DRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRA 302 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544433322222222221222222111111 1112233468899999988888988888888888888899999999
Q ss_pred HHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHH
Q 000904 953 SVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGA 1032 (1232)
Q Consensus 953 sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~ 1032 (1232)
+.+|+.++.+.+++.+... ...+...+|..+.|+|+||+|+|+++ +++|+|+||+|++||++||||+||||||||+++
T Consensus 303 ~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~l 380 (529)
T TIGR02868 303 AAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLML 380 (529)
T ss_pred HHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999999987765432211 11111123445789999999999754 469999999999999999999999999999999
Q ss_pred HhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1033 LFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1033 L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
|+|+++|++|+|.+||+|++++ .+++|++++||||||.+|+|||||||.... +.+|+|+++|++.+++++++.++|+|
T Consensus 381 L~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~G 459 (529)
T TIGR02868 381 LTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDG 459 (529)
T ss_pred HhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCccc
Confidence 9999999999999999999999 999999999999999999999999998754 57999999999999999999999999
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecCh
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI 1181 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl 1181 (1232)
|||.+||+|.+||||||||+|||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||+
T Consensus 460 ldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 460 LDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred ccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999888899999999995
No 32
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.1e-66 Score=642.35 Aligned_cols=497 Identities=21% Similarity=0.267 Sum_probs=398.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000904 723 MSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAV 802 (1232)
Q Consensus 723 ~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~ 802 (1232)
+...........+...+++.++++++++.|+++|+++++|++++|+++|++.+.......+...+...+..+..+++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (585)
T TIGR01192 74 VLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA 153 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555666778999999999999999999999999999999998876666665556666666666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchH
Q 000904 803 VTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFF 882 (1232)
Q Consensus 803 ~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~ 882 (1232)
.+|.+.++.+.+..+...+...+.+..++..+......+...+++.|.+.|+.+||+|+.++++.+++.+..+...+..+
T Consensus 154 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 233 (585)
T TIGR01192 154 MDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQY 233 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 89988776555555555555555555555555555566778899999999999999999998887776665554333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000904 883 QTFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYM 961 (1232)
Q Consensus 883 ~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~ 961 (1232)
.......+.......+..+.... ..+.......|.++.|.+..++.|...+..++..+.....++.....+.+|+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~ 313 (585)
T TIGR01192 234 PVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLE 313 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111111111111111111 11112233478899999988899998888888888888888888899999999887
Q ss_pred cCCCCCCcccCCCCCCCCC-CCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC
Q 000904 962 HVPSEAPEVVEDNRPPPNW-PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA 1040 (1232)
Q Consensus 962 ~~~~e~~~~~~~~~~~~~w-p~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~ 1040 (1232)
+.+++.+. ...+ ..+ +..+.|+++||+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|+
T Consensus 314 ~~~~~~~~---~~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 388 (585)
T TIGR01192 314 DSVFQREE---PADA-PELPNVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT 388 (585)
T ss_pred cCCccccC---CccC-CCCCCCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC
Confidence 65543211 1111 111 234679999999999743 46899999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCC
Q 000904 1041 GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVED 1119 (1232)
Q Consensus 1041 ~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~ 1119 (1232)
+|+|.+||+|+++++.+++|++++|+||||.+|++|+|+|+.... +.+|++++++++.+++.+++.++|+|+||.++++
T Consensus 389 ~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 389 VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCC
Confidence 999999999999999999999999999999999999999998653 4689999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEE
Q 000904 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLA 1199 (1232)
Q Consensus 1120 G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vv 1199 (1232)
|.+||||||||++|||||+++|+|||||||||+||.+|++.+++.|++..+++|+|+||||++++..||+|++|++|+++
T Consensus 469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999877899999999999999999999999999999
Q ss_pred EecChhHHHhhcCCHHHHHHHHHHhh
Q 000904 1200 EYDEPMKLMKREGSLFGQLVREYWSH 1225 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~~~f~~l~~~~~~~ 1225 (1232)
|.|+|++++++ ++.|+++++.....
T Consensus 549 ~~g~~~~l~~~-~~~y~~l~~~~~~~ 573 (585)
T TIGR01192 549 EKGSFQELIQK-DGRFYKLLRRSGLL 573 (585)
T ss_pred EECCHHHHHHC-CChHHHHHHhCccc
Confidence 99999999986 68999999876543
No 33
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=9.3e-66 Score=635.69 Aligned_cols=481 Identities=21% Similarity=0.256 Sum_probs=384.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHH
Q 000904 708 IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAV 787 (1232)
Q Consensus 708 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~ 787 (1232)
...+.++.++..++.+.+.+.....+.+...+++.++++++++.|..+|++.+.|++++|+++|.+.++......+..++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~ 126 (529)
T TIGR02857 47 LGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLV 126 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455556666777888888888889999999999999999999999999999999999999999999877766666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHH
Q 000904 788 GATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFF 867 (1232)
Q Consensus 788 ~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~ 867 (1232)
......+..++++...+|.+.++.+....+.......+.+..+...+..........+++.|.++|+.+||+|+.++++.
T Consensus 127 ~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 206 (529)
T TIGR02857 127 LAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQA 206 (529)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHH
Confidence 77777777777888888876554332222222222222222222222333344567789999999999999999999988
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 868 AKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCT 946 (1232)
Q Consensus 868 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~ 946 (1232)
+++.+..+...+..........+.......+..+..... .+.......|.++.|.+..+..|...+..++..+......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~ 286 (529)
T TIGR02857 207 AAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHA 286 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766555444333322222232222222222222111 1112222367899998888888888888888888888999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCCh
Q 000904 947 LANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGK 1026 (1232)
Q Consensus 947 ~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGK 1026 (1232)
+.....+.+|+.++.+.+++... . .+...+..+.|+++||+|+|+++.+++|+|+||+|++||++||||+|||||
T Consensus 287 ~~~~~~~~~ri~~ll~~~~~~~~----~-~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGK 361 (529)
T TIGR02857 287 RADGVAAAEALFAVLDAPRPLAG----K-APVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGK 361 (529)
T ss_pred HHHHHHHHHHHHHHhCCCcccCC----C-cCCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCH
Confidence 99999999999999875433211 1 111122346899999999997655579999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHH
Q 000904 1027 TTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1027 STLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i 1105 (1232)
|||+++|.|+++|++|+|.+||+|+++++.+++|++++||||||.+|+||||||+.... +.+|++++++++.+++++++
T Consensus 362 STL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i 441 (529)
T TIGR02857 362 STLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFV 441 (529)
T ss_pred HHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999998654 57899999999999999999
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
+++|+||||.++|+|.+||||||||++||||++++|+||+||||||+||++|++.+++.|++..+++|+|+||||++++.
T Consensus 442 ~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 442 AALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE 521 (529)
T ss_pred HhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998878999999999999999
Q ss_pred hcCeEEEE
Q 000904 1186 DCTMVLAI 1193 (1232)
Q Consensus 1186 ~~DrVlVL 1193 (1232)
.||+|+||
T Consensus 522 ~~d~i~~l 529 (529)
T TIGR02857 522 RADRIVVL 529 (529)
T ss_pred hCCEEEeC
Confidence 99999986
No 34
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-67 Score=578.37 Aligned_cols=484 Identities=22% Similarity=0.341 Sum_probs=380.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHH---HHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHH
Q 000904 729 SVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRV---LSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG-VLAVVT 804 (1232)
Q Consensus 729 ~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~i---lnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~-v~~~~~ 804 (1232)
+...+..+.+.+--+.+.++....+.|.-+..+|.+ +.|=++.++.+-. ..+...+-..+.+....+ ......
T Consensus 6 fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~---~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 6 FSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILR---WILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHH---HHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 334455555666667778888888888766555544 4443444443332 222222222222222222 223356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHH
Q 000904 805 WQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQT 884 (1232)
Q Consensus 805 ~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 884 (1232)
|++..+.....+++.+..-....-.-..+|.-..+.+...+...+++-+..|++.|+.|+.+..++.+.++.+.+.....
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 77777666666666554433333333444555556666777888999999999999999998888877777766555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 000904 885 FAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHV 963 (1232)
Q Consensus 885 ~~~~~wl~~rl~~~~~~~~~~~~~-~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~ 963 (1232)
.....||...-..+.......... ....+..|.++.|.....-.+.+++..+++.+-..+.++.+.....|++.+..+.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 444445544332222211111111 1122346789999999999999999999999999999999999999999988776
Q ss_pred CCCCCcccCCCCCCCCCC-CcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCcc
Q 000904 964 PSEAPEVVEDNRPPPNWP-VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG 1042 (1232)
Q Consensus 964 ~~e~~~~~~~~~~~~~wp-~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G 1042 (1232)
+.|.. +....++-|| ..|.|.|+||+|.|.|.. ++|+|+||++++|+++||||++|+||||+.++|+|+|++++|
T Consensus 243 ~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 243 EAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred chhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 65532 1222344565 358899999999998765 699999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCC
Q 000904 1043 KILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS 1121 (1232)
Q Consensus 1043 ~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~ 1121 (1232)
.|.|||+||.++..+.+|+.||+||||.+||++|+.+|+...+ ..+++|++.|++.++++++++.+|+|+|+.|||.|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 9999999999999999999999999999999999999998655 479999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 000904 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1122 nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
.||||||||++|||++|++|+||+||||||+||..||+.||.+|++..+++|.++||||++||.|+|.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHhhcCCHHHHHHH
Q 000904 1202 DEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
|+|++|+.+ +|.|++|+.
T Consensus 479 g~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc-CChHHHHhc
Confidence 999999997 899999974
No 35
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.3e-63 Score=617.44 Aligned_cols=491 Identities=20% Similarity=0.216 Sum_probs=381.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhh-HHHHH
Q 000904 708 IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPF-SLIFA 786 (1232)
Q Consensus 708 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~-~l~~~ 786 (1232)
..+++++.++..++.+.+.+.....+.+....++.++++++++.|+.. .+...+++.+|++.+...... .+..+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~ 123 (544)
T TIGR01842 49 TVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAF 123 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444455566777778888888889999999999999999999843 255678889999988765544 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHH
Q 000904 787 VGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 866 (1232)
Q Consensus 787 ~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f 866 (1232)
+...+..+ .+++++..+|++.++.+....+...+.....+..+...+......+...+++.|.++|+.+||+|+.++.+
T Consensus 124 ~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 202 (544)
T TIGR01842 124 FDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNL 202 (544)
T ss_pred HHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHH
Confidence 33333333 34566777777665433222222222222222223333333445566788999999999999999999988
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 867 FAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVI-SSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 945 (1232)
Q Consensus 867 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~-~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~ 945 (1232)
.+++.+..++..+..................+..+.. ....+.......|.+++|.+..++.+...+..++..+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~ 282 (544)
T TIGR01842 203 TKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWK 282 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877766655443332222111111111111111111 111122223347889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCC
Q 000904 946 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1025 (1232)
Q Consensus 946 ~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSG 1025 (1232)
++.....+.+|+.++.+.+++.+. ....+ +..+.|+++|++|+|+++.+++|+|+||+|++||++||||+||||
T Consensus 283 ~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsG 356 (544)
T TIGR01842 283 QFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSG 356 (544)
T ss_pred HHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCC
Confidence 999999999999999876554321 11111 234679999999999765567999999999999999999999999
Q ss_pred hHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHH
Q 000904 1026 KTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEA 1104 (1232)
Q Consensus 1026 KSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~ 1104 (1232)
||||+++|+|+++|++|+|.+||+|+.+++.+++|++++|+||||.+|++|+|+|+..++ +.+|++++++++.++++++
T Consensus 357 KSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~ 436 (544)
T TIGR01842 357 KSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHEL 436 (544)
T ss_pred HHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHH
Confidence 999999999999999999999999999999999999999999999999999999998655 4789999999999999999
Q ss_pred HHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh
Q 000904 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT 1183 (1232)
Q Consensus 1105 i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t 1183 (1232)
++++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||.+|++.+.+.|++.. +++|+|+||||+++
T Consensus 437 i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~ 516 (544)
T TIGR01842 437 ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL 516 (544)
T ss_pred HHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 57999999999999
Q ss_pred hhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1184 VMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1184 i~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+..||+|++|++|+++|.|+|++|+++
T Consensus 517 ~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 517 LGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999753
No 36
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.8e-63 Score=664.20 Aligned_cols=512 Identities=20% Similarity=0.259 Sum_probs=401.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHH
Q 000904 707 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFA 786 (1232)
Q Consensus 707 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~ 786 (1232)
+...+++++++..++.+++.+.....+.+...+++.++++++++.|++|||..+.|++.+|++.|.+.+...+...+..+
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~ 178 (1466)
T PTZ00265 99 IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITI 178 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778888999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHH
Q 000904 787 VGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 866 (1232)
Q Consensus 787 ~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f 866 (1232)
+...+..++.++++++.+|.+.++.+.++.+...+...+.+..+...+......+...+.+.|++.|+++|++|+.|+++
T Consensus 179 ~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~ 258 (1466)
T PTZ00265 179 FTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTI 258 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHH
Confidence 88889999999999999999877644433333333333333333334444444456778899999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCC--------CCcchHHHHHHHHHHHHHHHHH
Q 000904 867 FAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPP--------GTFTPGFIGMALSYGLSLNSSL 937 (1232)
Q Consensus 867 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~-~~~~~~--------g~~~~g~~gl~l~~~~~l~~~l 937 (1232)
.+++.+..+...+..........+.......+..+......++ ..+... +.+++|.+...+.+.+.....+
T Consensus 259 ~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l 338 (1466)
T PTZ00265 259 LKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFML 338 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHH
Confidence 8888766555444333222222111111111111111111111 111112 2455554444433333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEE
Q 000904 938 VMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKI 1016 (1232)
Q Consensus 938 ~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~Gekv 1016 (1232)
..+......+.....+.+|+.+.++.+++.+.. .+. ...|..+.|+|+||+|+|+.. ..++|+|+||+|++||++
T Consensus 339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~~---~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 339 TIILPNITEYMKSLEATNSLYEIINRKPLVENN-DDG---KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCC---ccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 445566778888899999999998766543211 111 112233579999999999643 236999999999999999
Q ss_pred EEECCCCCChHHHHHHHhccccCCccEEEE-CCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC----------
Q 000904 1017 GIVGRTGSGKTTLIGALFRLVEPAGGKILV-DGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS---------- 1085 (1232)
Q Consensus 1017 gIVGrtGSGKSTLl~~L~rl~ep~~G~I~I-DG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~---------- 1085 (1232)
||||+||||||||+++|.|+++|++|+|.+ ||.|+++++.+++|++|+||||||.+|++||++||....
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 999999999999999999999999999999 679999999999999999999999999999999996421
Q ss_pred ------------------------------------------------CCCHHHHHHHHHHcCCcHHHHhhccCCccccc
Q 000904 1086 ------------------------------------------------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVV 1117 (1232)
Q Consensus 1086 ------------------------------------------------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~ 1117 (1232)
+.+|++++++++++++++++.++|+|+||.++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 24678999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1118 e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
++|.+||||||||++|||||+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||++++..||+|+||++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999864 47999999999999999999999998
Q ss_pred C-----------------------------------------------EEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1196 G-----------------------------------------------KLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1196 G-----------------------------------------------~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
| +|+|.|+|+||+++++|.|+.|++..
T Consensus 655 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 655 RERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 6 59999999999986789999999654
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.7e-61 Score=595.70 Aligned_cols=479 Identities=17% Similarity=0.181 Sum_probs=363.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHH
Q 000904 713 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792 (1232)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~ 792 (1232)
++.++..++.+...+.....+.+...+++.++++++++.|+.+|++.+.|++++|+++|++.++.... .+...+...+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~ 139 (555)
T TIGR01194 61 GLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAI 139 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHH
Confidence 33444556667777777788889999999999999999999999999999999999999999987664 35556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHH--HHHHHH
Q 000904 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED--RFFAKN 870 (1232)
Q Consensus 793 ~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~--~f~~~~ 870 (1232)
.+..+++++..+|.+.++.+..+.+.........+..++..+......+.+.+++.|.+.|+.++|+|+.++ ...+++
T Consensus 140 ~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 219 (555)
T TIGR01194 140 FFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAI 219 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHh
Confidence 777788888889888766443333322222222222222223333344568889999999999999999854 223333
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 871 LDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANY 950 (1232)
Q Consensus 871 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~ 950 (1232)
.+..+...+..................+........... ....|.++.|.+..++.|...+..++..+.....++...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a 297 (555)
T TIGR01194 220 QESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFA--AAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQA 297 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222211111111111111111111111111111 111267888988888889999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCccc--CC-CCC--CCCCCCcceEEEEeeEeEecCC---CCccceeeeEEEeCCcEEEEECCC
Q 000904 951 IISVERLNQYMHVPSEAPEVV--ED-NRP--PPNWPVVGKVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRT 1022 (1232)
Q Consensus 951 ~~sveRi~~~~~~~~e~~~~~--~~-~~~--~~~wp~~G~I~~~nvs~~Y~~~---~~~vL~~vsl~I~~GekvgIVGrt 1022 (1232)
..+.+|+.++.+.+.+++... ++ ... .+..+..+.|+++||+|+|++. .+++|+|+||+|++||++||||+|
T Consensus 298 ~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~s 377 (555)
T TIGR01194 298 QIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGEN 377 (555)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCC
Confidence 999999999875432211110 00 000 0111224689999999999643 236999999999999999999999
Q ss_pred CCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCc
Q 000904 1023 GSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLG 1102 (1232)
Q Consensus 1023 GSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~ 1102 (1232)
|||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||.+|++|+++|+.| +.++++++++++.++++
T Consensus 378 GsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~ 455 (555)
T TIGR01194 378 GCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIA 455 (555)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999743 56889999999999999
Q ss_pred HHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH-h-cCCcEEEEEecC
Q 000904 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA-E-FADCTVITVAHR 1180 (1232)
Q Consensus 1103 ~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~-~-~~~~TVI~IAHr 1180 (1232)
+++.++|+|+||. .+||||||||++||||++++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||
T Consensus 456 ~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 456 DKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530 (555)
T ss_pred hhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 9999999999984 68999999999999999999999999999999999999999887643 2 358999999999
Q ss_pred hhhhhhcCeEEEEeCCEEEEe
Q 000904 1181 IPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1181 l~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
++++..||+|+||++|+++|.
T Consensus 531 ~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 531 DQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999985
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-58 Score=622.92 Aligned_cols=474 Identities=20% Similarity=0.235 Sum_probs=357.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 730 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLF 809 (1232)
Q Consensus 730 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l 809 (1232)
...+.+....+...++++.++.|..++++...|+++|++++|++.++... ..+..+....+.++..+.++...-....+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45667777788889999999999999999999999999999999998754 23333333333333222222111001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 000904 810 VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANE 889 (1232)
Q Consensus 810 ~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 889 (1232)
+..++.++...+...+.+..+..++.....+....+.+.|.++|+++||.|++|+.+.++..+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222233333333344444444455677889999999999999999999988776654443322222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 000904 890 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPE 969 (1232)
Q Consensus 890 wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~ 969 (1232)
+........ ..++....+.......|.+++|.+-.++++...+..++..+......+.+...+.+|+.++++.+++.+.
T Consensus 525 ~~~~~~~~~-~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSI-PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 111101111 1111111222222336789999998888888888888888888889999999999999999876543211
Q ss_pred ccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC
Q 000904 970 VVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG 1048 (1232)
Q Consensus 970 ~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG 1048 (1232)
..++ ..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 604 ----~~~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 ----QNPP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred ----ccCC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 0111 11233579999999999753 35799999999999999999999999999999999999999998763
Q ss_pred eeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1049 IDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1049 ~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|++|+||||+|.+|+|||||||....++++++++++++.|++.++++.+|+|+||.|||+|.+||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 35789999999999999999999997777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMIL-QKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~I-q~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++||||++++|+|++||||||+||.+|++.| ++.++...+++|+|+||||++++..||+|++|++|+++|.|+|++|
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999877 5557766689999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHH
Q 000904 1208 MKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1208 l~~~~~~f~~l~~~~~ 1223 (1232)
+++ ++.|++++++..
T Consensus 827 ~~~-~~~~~~l~~~~~ 841 (1495)
T PLN03232 827 SKS-GSLFKKLMENAG 841 (1495)
T ss_pred Hhc-chhHHHHHHhcc
Confidence 975 688999987654
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.8e-58 Score=615.66 Aligned_cols=473 Identities=19% Similarity=0.235 Sum_probs=359.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 730 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLF 809 (1232)
Q Consensus 730 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l 809 (1232)
...+.+....+...++++.++.|...+...+.|+++|+++.|++.++.... .+..+....+.++..+.++........+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888899999999999999999999999999999999987653 3333344444433333332221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 000904 810 VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANE 889 (1232)
Q Consensus 810 ~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 889 (1232)
+..+++++...++..+.+..+..++.....+....+.+.|.++|+++||.|++|+.+.++..+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333343434444444444556677889999999999999999999888776654443221111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 000904 890 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPE 969 (1232)
Q Consensus 890 wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~ 969 (1232)
+....... ....+....+.......|.+++|.+..++++...+..++..+......+.....+.+|+.++++.+++.+.
T Consensus 525 ~~~~~~~~-~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 525 FNSFILNS-IPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 11110011 11111111222222336789999988888888888888888888889999999999999999875433211
Q ss_pred ccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc-cEEEEC
Q 000904 970 VVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG-GKILVD 1047 (1232)
Q Consensus 970 ~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~-G~I~ID 1047 (1232)
.. ++ .-+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|.+ |+|.+
T Consensus 604 ---~~-~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 604 ---PN-PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred ---cC-Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 00 11 01223579999999999743 3579999999999999999999999999999999999999999 99974
Q ss_pred CeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1048 GIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1048 G~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
|++|+||||+|.+|+|||||||....++++++++++++.|+|.++++.+|+|+||.|||+|.+|||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 56899999999999999999999777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMIL-QKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~I-q~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||||+||||++++|+|+|||||||+||.++++.| ++.++...+++|+|+||||++++..+|+|++|++|+++|.|++++
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999866 567777668999999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHH
Q 000904 1207 LMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1207 Ll~~~~~~f~~l~~~~~ 1223 (1232)
|+++ ++.|++++++.+
T Consensus 826 L~~~-~~~~~~l~~~~~ 841 (1622)
T PLN03130 826 LSNN-GPLFQKLMENAG 841 (1622)
T ss_pred HHhc-chhHHHHHHhcc
Confidence 9975 688999987654
No 40
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1e-57 Score=564.99 Aligned_cols=464 Identities=17% Similarity=0.190 Sum_probs=342.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000904 719 TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG 798 (1232)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~ 798 (1232)
.++.++..+.....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+..... .+...+...+..+..++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34455666777778888999999999999999999999999999999999999998876443 45556677777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchH---HHHHHHHHHHHH
Q 000904 799 VLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE---DRFFAKNLDLID 875 (1232)
Q Consensus 799 v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~---~~f~~~~~~~~d 875 (1232)
+++..+|.+.++.+..+.+...+...+.+..+...+......+...+++.|.+.|+.+++ ++.+ +++.+++.+..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 888889988776544443333333333333333333334455678889999999999995 4433 234444444443
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 876 TNASPFFQTFAANEWLIQRLETLSATV-ISSAAFCMVLL-PPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIIS 953 (1232)
Q Consensus 876 ~~~~~~~~~~~~~~wl~~rl~~~~~~~-~~~~~~~~~~~-~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~s 953 (1232)
...+..... .+............ ....+...+.. ..+....+..+....+.+.+..++..+.....++.....+
T Consensus 220 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 220 EYRHHIIRA----DTFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222111 11111111111111 11111111111 0111223333333444445567788888888889999999
Q ss_pred HHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHH
Q 000904 954 VERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGAL 1033 (1232)
Q Consensus 954 veRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L 1033 (1232)
.+|+.++.+.|.+++. +...+. |..+.|+++||+|+|++ .+++|+|+||+|++||++||||+||||||||+++|
T Consensus 296 ~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll 369 (547)
T PRK10522 296 FNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL 369 (547)
T ss_pred HHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999998655433211 011111 12357999999999974 34699999999999999999999999999999999
Q ss_pred hccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCc
Q 000904 1034 FRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLD 1113 (1232)
Q Consensus 1034 ~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLd 1113 (1232)
+|+++|++|+|.+||+|+++++.+++|++++||||||.+|++|+++| ....+|++++++++++++.+.+.. ++|.
T Consensus 370 ~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~- 444 (547)
T PRK10522 370 TGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR- 444 (547)
T ss_pred hCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-
Confidence 99999999999999999999999999999999999999999999998 235678899999999999876653 3332
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEE
Q 000904 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1114 t~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
.+|.+||||||||++||||++++|+|||||||||+||.++++.+.+.+.+.. +++|+|+||||++++..||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 2478999999999999999999999999999999999999999999987644 4799999999999999999999
Q ss_pred EEeCCEEEEecC
Q 000904 1192 AISDGKLAEYDE 1203 (1232)
Q Consensus 1192 VL~~G~vvE~g~ 1203 (1232)
+|++|+++|.+.
T Consensus 521 ~l~~G~i~e~~~ 532 (547)
T PRK10522 521 EMRNGQLSELTG 532 (547)
T ss_pred EEECCEEEEecC
Confidence 999999998843
No 41
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.7e-56 Score=506.51 Aligned_cols=479 Identities=22% Similarity=0.267 Sum_probs=349.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHH
Q 000904 714 IGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNA 793 (1232)
Q Consensus 714 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~ 793 (1232)
+.++..++..+|.......+.+....+....+...+++|..--...+..+.+ +|++.+...+...-...+.-.-..
T Consensus 72 ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~ 147 (580)
T COG4618 72 LYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWM 147 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchH
Confidence 3345567788899999999999988898888888887765433222222222 355544433321111100000011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHH
Q 000904 794 YSNLGVLAVVTWQVLFVSIPVIFL----AIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK 869 (1232)
Q Consensus 794 l~~l~v~~~~~~~~~l~~~p~~~l----~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~ 869 (1232)
-..+.+++...|++.++.+...++ .+.-++.-.+..++ .++....-.++...+..+..+|++.+...+..++
T Consensus 148 P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~e----A~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~r 223 (580)
T COG4618 148 PLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKE----ASEASIRANQLADATLRNAEVIEAMGMLGNLAKR 223 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH----HHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHH
Confidence 123445555666665443322222 22222222222222 2333344456677788899999999986655444
Q ss_pred H----HHHHHhcCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 870 N----LDLIDTNASPFFQTFAAN-EWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQ 944 (1232)
Q Consensus 870 ~----~~~~d~~~~~~~~~~~~~-~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~ 944 (1232)
+ ...++.+.+......... ---..|+-+- . ....+.+++..+|++++|.+-..--..-....++...+..|
T Consensus 224 W~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ-s---~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~W 299 (580)
T COG4618 224 WGRFNAAYLSAQERASDRNGAFGALSRALRMALQ-S---AVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANW 299 (580)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-H---HHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHH
Confidence 3 333333333222111100 0001111110 1 11122234445788999987655444455667888889999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCC
Q 000904 945 CTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1024 (1232)
Q Consensus 945 ~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGS 1024 (1232)
.+......|..|+.+.+...++..... +-|+ .+|.+.++++.+.=++..+++|+|+||++++||-+||||||||
T Consensus 300 kq~~~Ar~s~~Rl~~lL~~~p~~~~~m----~LP~--P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgS 373 (580)
T COG4618 300 KQFVAARQSYKRLNELLAELPAAAERM----PLPA--PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGS 373 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCC----CCCC--CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCc
Confidence 999999999999999886544332111 1111 2589999999986555566899999999999999999999999
Q ss_pred ChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcH
Q 000904 1025 GKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGE 1103 (1232)
Q Consensus 1025 GKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~ 1103 (1232)
|||||.++|.|..+|.+|+|.+||-|+.+++.+++-++|||.|||-.||+|||.+||.-|+ +.+++.|.+|.+.++.+|
T Consensus 374 GKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHe 453 (580)
T COG4618 374 GKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHE 453 (580)
T ss_pred cHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHH
Confidence 9999999999999999999999999999999999999999999999999999999999888 577888999999999999
Q ss_pred HHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChh
Q 000904 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIP 1182 (1232)
Q Consensus 1104 ~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ 1182 (1232)
.|.++|+||||.+||+|..||||||||++||||+..+|+++|||||-|+||.+-|+.+.++|.+. .+++|+|+||||++
T Consensus 454 lIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 454 LILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred HHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999998874 46899999999999
Q ss_pred hhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1183 TVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1183 ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
.+..+|+|+||++|++..||+-+|.+++
T Consensus 534 ~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 534 ALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999875
No 42
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.1e-53 Score=571.25 Aligned_cols=475 Identities=18% Similarity=0.237 Sum_probs=355.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 727 LSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQ 806 (1232)
Q Consensus 727 ~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~ 806 (1232)
+.....+.+....+...+++++++.|..+++....|+++|+++.|.+.+.... ..+..+....+.++..+.++......
T Consensus 380 ~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~ 458 (1522)
T TIGR00957 380 HICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGP 458 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34456778888889999999999999999999999999999999999887533 23333333444433333333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcCCchHHHHH
Q 000904 807 VLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFA 886 (1232)
Q Consensus 807 ~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~ 886 (1232)
..++.+.++++...+...+.+..+..++.....+....+...|.++|+++||.+++|+.+.++..+..+...+...
T Consensus 459 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~---- 534 (1522)
T TIGR00957 459 SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLK---- 534 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----
Confidence 1112111122222223333333333333334445556788999999999999999999988776655444322211
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHH--HHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000904 887 ANEWLIQRLETL---SATVISSAAF--CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYM 961 (1232)
Q Consensus 887 ~~~wl~~rl~~~---~~~~~~~~~~--~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~ 961 (1232)
...++....... ...++....+ +.+....+.++++.+-.++++...+..++..+......+.....+.+|+.+++
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l 614 (1522)
T TIGR00957 535 KSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFL 614 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 1111111111 11111234577777777777776777888888889999999999999999998
Q ss_pred cCCCCCCcccCCCCCCCCCCC-cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC
Q 000904 962 HVPSEAPEVVEDNRPPPNWPV-VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA 1040 (1232)
Q Consensus 962 ~~~~e~~~~~~~~~~~~~wp~-~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~ 1040 (1232)
+.+++.+...+.. ...+. .+.|+++|++|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|+
T Consensus 615 ~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~ 691 (1522)
T TIGR00957 615 SHEELEPDSIERR---TIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 691 (1522)
T ss_pred cCccccccccccc---ccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC
Confidence 7654432111111 01111 2479999999999755567999999999999999999999999999999999999999
Q ss_pred ccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1041 GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1041 ~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
+|+|.+|| +++|+||+|.+|++|||+|+.....+++++.+++++.|++.+.+..+|.|++|.++++|
T Consensus 692 ~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g 758 (1522)
T TIGR00957 692 EGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKG 758 (1522)
T ss_pred CcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC
Confidence 99999997 69999999999999999999865567788899999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH---hcCCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA---EFADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~---~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
.+||||||||++||||++++|+|++||||||+||.++++.+.+.+.+ ..+++|+|+||||++.+..||+|++|++|+
T Consensus 759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~ 838 (1522)
T TIGR00957 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGK 838 (1522)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCe
Confidence 99999999999999999999999999999999999999999998863 346899999999999999999999999999
Q ss_pred EEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1198 LAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
+++.|++++++++ ++.|+++.+++.
T Consensus 839 i~~~g~~~~l~~~-~~~~~~l~~~~~ 863 (1522)
T TIGR00957 839 ISEMGSYQELLQR-DGAFAEFLRTYA 863 (1522)
T ss_pred EEeeCCHHHHHhc-chhHHHHHHhhc
Confidence 9999999999975 678999887543
No 43
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.3e-54 Score=484.24 Aligned_cols=239 Identities=38% Similarity=0.695 Sum_probs=229.3
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
|.|+++|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|.|||+|+..++.+++|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997656679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+||||+|.+|++|+++|++|++..+++++|++++.+++.+++..+|.+||+.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998887889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|||||||++||+.+++.+++.|++.+.++|||+||||++++..||||++|++|+++|+|+|++|+++ .+.|++++++.+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999988889999999999999999999999999999999999999996 589999998876
Q ss_pred h
Q 000904 1224 S 1224 (1232)
Q Consensus 1224 ~ 1224 (1232)
.
T Consensus 239 ~ 239 (275)
T cd03289 239 R 239 (275)
T ss_pred h
Confidence 3
No 44
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-51 Score=520.99 Aligned_cols=489 Identities=23% Similarity=0.288 Sum_probs=361.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHH
Q 000904 716 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYS 795 (1232)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~ 795 (1232)
++..++.-...+.....|.+....+-..++++.++..-..-...+.|+|+|-++.|.+.++....+. .......++++.
T Consensus 253 ~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~ 331 (1381)
T KOG0054|consen 253 LLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIIL 331 (1381)
T ss_pred HHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333333333334456677777778888889999988777677889999999999999998654432 222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHH
Q 000904 796 NLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLID 875 (1232)
Q Consensus 796 ~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d 875 (1232)
.+..+...-..-.++.+.++++...++....+..+..++.....+..-....+|.++|+++||.|+||+.|.++-.+.-+
T Consensus 332 ~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~ 411 (1381)
T KOG0054|consen 332 ALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQ 411 (1381)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHH
Confidence 33332222112222333344444444544444444444444455555667789999999999999999999877655433
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 876 TNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVL-LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISV 954 (1232)
Q Consensus 876 ~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~-~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sv 954 (1232)
+..+...+. ....-....+......++.++.+.... ...+.+++..+-.++++.-.+..++..+-.....+.+..+|+
T Consensus 412 ~El~~lrk~-~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~ 490 (1381)
T KOG0054|consen 412 KELKLLRKS-AYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSL 490 (1381)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322211111 111111111122222222333333222 335567776776677776667777777777777788889999
Q ss_pred HHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHH
Q 000904 955 ERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGAL 1033 (1232)
Q Consensus 955 eRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L 1033 (1232)
+|+.+|+..+...+...+. .+.-+..-.|+++|.++++.++ .++.|+||||+|++|+.+||||++|||||||+++|
T Consensus 491 ~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~Ai 567 (1381)
T KOG0054|consen 491 KRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAI 567 (1381)
T ss_pred HHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 9999998765443322211 1111233469999999999763 44599999999999999999999999999999999
Q ss_pred hccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCc
Q 000904 1034 FRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLD 1113 (1232)
Q Consensus 1034 ~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLd 1113 (1232)
+|-.+..+|++.++| .++|+||+|.+|+|||||||-...+++++.-.++++.|+|++.++.+|.|=.
T Consensus 568 LGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~ 634 (1381)
T KOG0054|consen 568 LGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDL 634 (1381)
T ss_pred hcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCc
Confidence 999999999999999 5999999999999999999997778999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEEecChhhhhhcCeEEE
Q 000904 1114 SLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL-QKTIRAEFADCTVITVAHRIPTVMDCTMVLA 1192 (1232)
Q Consensus 1114 t~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~I-q~~L~~~~~~~TVI~IAHrl~ti~~~DrVlV 1192 (1232)
|+|||+|.|||||||||++||||+.++++|.+||.|-|+||.++.+.| ++.|+...+++|+|.|||.++.+.++|+|+|
T Consensus 635 TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 635 TEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV 714 (1381)
T ss_pred ceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEE
Confidence 999999999999999999999999999999999999999999986554 6678777789999999999999999999999
Q ss_pred EeCCEEEEecChhHHHhhcCCHHHHHHHHHH
Q 000904 1193 ISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1193 L~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|+||+|+|.|+++||++. ++.|.++.++..
T Consensus 715 l~~G~I~~~Gty~el~~~-~~~~~~l~~~~~ 744 (1381)
T KOG0054|consen 715 LKDGKIVESGTYEELLKS-GGDFAELAHEEE 744 (1381)
T ss_pred ecCCeEecccCHHHHHhc-chhHHHHhhccc
Confidence 999999999999999975 788888865443
No 45
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.3e-51 Score=517.34 Aligned_cols=464 Identities=13% Similarity=0.078 Sum_probs=349.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHH
Q 000904 715 GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794 (1232)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l 794 (1232)
.++..+..+...........+....++++.+++....++.+||. +.|++.+|+++|++.+.......+..++...+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii 227 (659)
T TIGR00954 149 SFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVI 227 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555556666677777777777777778888886 78999999999999999888888888888888877
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHH
Q 000904 795 SNLGVLAV-VTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDL 873 (1232)
Q Consensus 795 ~~l~v~~~-~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~ 873 (1232)
..++.+.. .+|.+.++.+....+...+.+.+.+..+++.+......+...+...|.+.|..+|++|+.++...+++.+.
T Consensus 228 ~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~ 307 (659)
T TIGR00954 228 LYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSS 307 (659)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHH
Confidence 77776665 77777665544444555555556655566665556666778889999999999999999998887776666
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcC----CCCcchHHH-HHHHHH---HHHHHHHHHHHH
Q 000904 874 IDTNASPFFQTFAANEWLIQRLETLSAT----VISSAAFCMVLLP----PGTFTPGFI-GMALSY---GLSLNSSLVMSI 941 (1232)
Q Consensus 874 ~d~~~~~~~~~~~~~~wl~~rl~~~~~~----~~~~~~~~~~~~~----~g~~~~g~~-gl~l~~---~~~l~~~l~~~v 941 (1232)
.+...+..........+......++... +........+... .|.++.|.. +..++| ..++..++..+.
T Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~ 387 (659)
T TIGR00954 308 FYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLM 387 (659)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444333333333333333221 1111111112221 266777653 334444 456678888888
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCC-------cccC--CC----C-----C--CCCCCCcceEEEEeeEeEecCCCCc
Q 000904 942 QNQCTLANYIISVERLNQYMHVPSEAP-------EVVE--DN----R-----P--PPNWPVVGKVDICDLQIRYRPDSPL 1001 (1232)
Q Consensus 942 ~~~~~~e~~~~sveRi~~~~~~~~e~~-------~~~~--~~----~-----~--~~~wp~~G~I~~~nvs~~Y~~~~~~ 1001 (1232)
....++.....+.+|+.++.+.+++.. ...+ +. . + .......+.|+++|++++|++ .++
T Consensus 388 ~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~-~~~ 466 (659)
T TIGR00954 388 LAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN-GDV 466 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC-CCe
Confidence 899999999999999999886432210 0000 00 0 0 000012367999999999963 346
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhcc
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL 1081 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NL 1081 (1232)
+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|+++|+
T Consensus 467 il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni 535 (659)
T TIGR00954 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQI 535 (659)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999875 6789999999999999999999
Q ss_pred CCC--------CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCC
Q 000904 1082 DPL--------SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153 (1232)
Q Consensus 1082 dp~--------~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~L 1153 (1232)
... .+.++++++++++.+++.+++.+ |.|+|+..+ .+.+||||||||++||||++++|++||||||||+|
T Consensus 536 ~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~L 613 (659)
T TIGR00954 536 IYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613 (659)
T ss_pred hcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 632 23578899999999999998876 899999876 56799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1154 DNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1154 D~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
|+++++.+++.+++ .++|+|+||||++++..||+|++|+.
T Consensus 614 D~~~~~~l~~~l~~--~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 614 SVDVEGYMYRLCRE--FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CHHHHHHHHHHHHH--cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999999987 38999999999999999999999973
No 46
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.8e-53 Score=496.32 Aligned_cols=471 Identities=22% Similarity=0.332 Sum_probs=309.4
Q ss_pred ceEEEEeeEEEecCCCC-CCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCc----cccccccc--ccccccc
Q 000904 626 HVISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT----QGTILQNS--WLAANVE 698 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~~-~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~----~G~v~~~~--~l~~~~~ 698 (1232)
..++++|++.+|..... .++++||||+|.+||.+||||+|||||||+.++|+|..|+. +|+|.-+. .+....
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~- 82 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE- 82 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH-
Confidence 47999999999976532 25999999999999999999999999999999999999987 57663221 000000
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCC-CCHHHHHHH----------
Q 000904 699 NPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS-TPLGRVLSR---------- 767 (1232)
Q Consensus 699 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~-~~~G~ilnR---------- 767 (1232)
+..+.++.+-..-+++.||+-++. ...|+.+..
T Consensus 83 ------------------------------------~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~ 126 (539)
T COG1123 83 ------------------------------------REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126 (539)
T ss_pred ------------------------------------HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccH
Confidence 000111111111122222222221 122222211
Q ss_pred ------HHhhHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 768 ------VSSDLSIVDL-------DVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMR 834 (1232)
Q Consensus 768 ------~s~D~~~vd~-------~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~r 834 (1232)
.-.-+..+.. ..|.. +++....-..+++.....|.+++++.|...++...|...++..+++++
T Consensus 127 ~ea~~~a~elL~~Vgl~~~~~~~~yPhe----LSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~ 202 (539)
T COG1123 127 AEARKRAVELLEQVGLPDPERRDRYPHQ----LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR 202 (539)
T ss_pred HHHHHHHHHHHHHcCCCChhhhccCCcc----cCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH
Confidence 1111111111 12222 222333334556666778899999999999999999999999999998
Q ss_pred HhhhhhHHHHHHHHHHHhhhHH-HhhcchHHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000904 835 LNGTTKSLVANHLAESIAGAMT-IRAFEEEDR-FFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVL 912 (1232)
Q Consensus 835 l~~~~~s~l~~~~~E~l~g~~t-Iraf~~~~~-f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~ 912 (1232)
..+.+-- +.+|-.+.++.+.. |-.....+. -.-.-.+.++..+.+|...
T Consensus 203 e~g~a~l-~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~---------------------------- 253 (539)
T COG1123 203 ELGMAVL-FITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRG---------------------------- 253 (539)
T ss_pred HcCcEEE-EEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHH----------------------------
Confidence 7766532 22333333321110 000000000 0000111222222222100
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeE
Q 000904 913 LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 992 (1232)
Q Consensus 913 ~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs 992 (1232)
.+ .+ .|...............-+...-++++|++
T Consensus 254 ---------Ll----------------------------~a---------~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~ 287 (539)
T COG1123 254 ---------LL----------------------------AA---------VPRLGDEKIIRLPRRGPLRAEPLLSVRNLS 287 (539)
T ss_pred ---------HH----------------------------hh---------CCCcccccccccccccccccCceeEeeeee
Confidence 00 00 111100000000000000122358899999
Q ss_pred eEecC---------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee--CCCCChHhhhc
Q 000904 993 IRYRP---------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID--ISKLGLHDLRS 1061 (1232)
Q Consensus 993 ~~Y~~---------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d--I~~i~l~~LR~ 1061 (1232)
.+|.. ....+++||||++++||++||||+||||||||.++|+|+++|++|+|.++|.| .+.-....+|+
T Consensus 288 k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~ 367 (539)
T COG1123 288 KRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRR 367 (539)
T ss_pred eeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhh
Confidence 99973 12468999999999999999999999999999999999999999999999977 33334667889
Q ss_pred cEEEEccCCCCC---cccHHhccC-CCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1062 RFGIIPQDPTLF---NGTVRYNLD-PLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1062 ~i~iVpQdP~LF---~gTIr~NLd-p~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
++.+|+|||+-. ..||+++|. |... ...+.+.+.|++++|.+... ...++.||||||||
T Consensus 368 ~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l----------~ryP~elSGGQrQR 437 (539)
T COG1123 368 RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFL----------DRYPHELSGGQRQR 437 (539)
T ss_pred heEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHH----------hcCchhcCcchhHH
Confidence 999999999632 559998884 3321 12245788899999985322 22356899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
+||||||..+|++||+|||||+||..+.+.+.+.|.+.- -+.|.|+||||+..++. ||||+||++|+|||.|+.+++
T Consensus 438 vaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred HHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999998887632 37999999999999998 999999999999999999999
Q ss_pred HhhcCCHHHHHHHHH
Q 000904 1208 MKREGSLFGQLVREY 1222 (1232)
Q Consensus 1208 l~~~~~~f~~l~~~~ 1222 (1232)
++++...|.+..-+.
T Consensus 518 ~~~p~h~Ytr~L~~a 532 (539)
T COG1123 518 FENPQHPYTRKLLAA 532 (539)
T ss_pred hcCCCChHHHHHHHh
Confidence 999888887665543
No 47
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2e-49 Score=533.79 Aligned_cols=481 Identities=18% Similarity=0.202 Sum_probs=347.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHH
Q 000904 715 GFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAY 794 (1232)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l 794 (1232)
.++..++.....+.....+.+....+...+++++++.+...+++.++|+++|+++.|++.+....... ..+....+.++
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~ 210 (1490)
T TIGR01271 132 FIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVI 210 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444444444555556777777788888899999999999999999999999999999998754432 22333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHH
Q 000904 795 SNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLI 874 (1232)
Q Consensus 795 ~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~ 874 (1232)
..+.++.....+..++.+.++++...++.+..+.....++..........+...|.++|+++||.|++|+.|.++..+..
T Consensus 211 ~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R 290 (1490)
T TIGR01271 211 LLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIR 290 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHH
Confidence 44444433333333333333333344444444444444444445555677889999999999999999999987776655
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000904 875 DTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLV-MSIQNQCTLANYIIS 953 (1232)
Q Consensus 875 d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~-~~v~~~~~~e~~~~s 953 (1232)
+...+..........+... +......+..+..+..+....+ .+++.+-.++++...+..++. .+......+....++
T Consensus 291 ~~El~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s 368 (1490)
T TIGR01271 291 QDELKLTRKIAYLRYFYSS-AFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGA 368 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433322211111111111 1111111111112112222123 455555555555555544443 455667777788999
Q ss_pred HHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCC--------------------------------CCc
Q 000904 954 VERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD--------------------------------SPL 1001 (1232)
Q Consensus 954 veRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~--------------------------------~~~ 1001 (1232)
++|+.+|+..++..+.. . + +....|+++|++|.|..+ .++
T Consensus 369 ~~RI~~fL~~~e~~~~~---~----~-~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 440 (1490)
T TIGR01271 369 ITKIQDFLCKEEYKTLE---Y----N-LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTP 440 (1490)
T ss_pred HHHHHHHhcCccccccc---c----c-CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCc
Confidence 99999999765432110 0 0 012347778888777321 135
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhcc
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNL 1081 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NL 1081 (1232)
+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+|| +++|+||+|.+|++|||+|+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI 507 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNI 507 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHH
Confidence 89999999999999999999999999999999999999999999998 59999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH
Q 000904 1082 DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMIL 1161 (1232)
Q Consensus 1082 dp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~I 1161 (1232)
.....+++++..++++.|+|.+.+..+|.|.+|.+|++|.+||||||||++||||++++|+|++||||||+||.++.+.|
T Consensus 508 ~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i 587 (1490)
T TIGR01271 508 IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 (1490)
T ss_pred HhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 84445666778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1162 QKT-IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1162 q~~-L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
.+. +++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ++.|.+...
T Consensus 588 ~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 646 (1490)
T TIGR01271 588 FESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLL 646 (1490)
T ss_pred HHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHh
Confidence 874 6666679999999999999999999999999999999999999875 456666653
No 48
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.5e-48 Score=523.26 Aligned_cols=489 Identities=17% Similarity=0.246 Sum_probs=360.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccC--CCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHH
Q 000904 716 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYD--STPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNA 793 (1232)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd--~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~ 793 (1232)
++..++.....+.....+.+....+...+++++++.+...+. ..+.|+++|.++.|++.+...... +..+....+.+
T Consensus 296 ~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~l 374 (1560)
T PTZ00243 296 LIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHH
Confidence 334444444445556677777778888999999998876665 467999999999999999876533 34445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHH
Q 000904 794 YSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDL 873 (1232)
Q Consensus 794 l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~ 873 (1232)
+..+.++.....+..++.+.++++...++.+..+.....++.....+........|.++|+++||.+++|+.|.++..+.
T Consensus 375 i~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~ 454 (1560)
T PTZ00243 375 LLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDK 454 (1560)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444444555555555555555555544444555566778899999999999999999998887665
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 874 IDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIIS 953 (1232)
Q Consensus 874 ~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~s 953 (1232)
-+...+..........+... +......++..+.+..+....+.++++.+-.++++...+..++..+...+..+....+|
T Consensus 455 R~~El~~l~~~~~~~~~~~~-~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS 533 (1560)
T PTZ00243 455 RARELRYLRDVQLARVATSF-VNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVS 533 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332222111111111111 11111111111122222233678999999988888888888888888889999999999
Q ss_pred HHHHHhhccCCCCCCc------cc--------C--C-----CC-------C---------------------------CC
Q 000904 954 VERLNQYMHVPSEAPE------VV--------E--D-----NR-------P---------------------------PP 978 (1232)
Q Consensus 954 veRi~~~~~~~~e~~~------~~--------~--~-----~~-------~---------------------------~~ 978 (1232)
.+|+.+|++.++..+. .. . . .. | +.
T Consensus 534 ~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1560)
T PTZ00243 534 IKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPT 613 (1560)
T ss_pred HHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 9999999875431100 00 0 0 00 0 00
Q ss_pred CCCCcceEEEEeeEeEec--------------------------------------CCCCccceeeeEEEeCCcEEEEEC
Q 000904 979 NWPVVGKVDICDLQIRYR--------------------------------------PDSPLVLKGISCTFEGGHKIGIVG 1020 (1232)
Q Consensus 979 ~wp~~G~I~~~nvs~~Y~--------------------------------------~~~~~vL~~vsl~I~~GekvgIVG 1020 (1232)
.++..+.+.++|+++.++ .+..++|+|+||+|++||+++|+|
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG 693 (1560)
T PTZ00243 614 KRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLG 693 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEEC
Confidence 011123466777766531 123458999999999999999999
Q ss_pred CCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcC
Q 000904 1021 RTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCH 1100 (1232)
Q Consensus 1021 rtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~ 1100 (1232)
+||||||||+++|.|+++|++|+|.++ ++|+|+||+|.+|++||++|+..+..++++++.++++.|+
T Consensus 694 ~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~ 760 (1560)
T PTZ00243 694 ATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQ 760 (1560)
T ss_pred CCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhh
Confidence 999999999999999999999999864 4799999999999999999998766666677889999999
Q ss_pred CcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHH-HHHHhcCCcEEEEEec
Q 000904 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQK-TIRAEFADCTVITVAH 1179 (1232)
Q Consensus 1101 L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~-~L~~~~~~~TVI~IAH 1179 (1232)
+.+.++.+|.|+++.++++|.+||||||||++||||++++|+|++||||||+||.++.+.+.+ .+....+++|+|+|||
T Consensus 761 l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH 840 (1560)
T PTZ00243 761 LEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATH 840 (1560)
T ss_pred hHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999998776654 4555557899999999
Q ss_pred ChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1180 RIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1180 rl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
+++.+..||+|++|++|++++.|++++++++ +.|.++..+
T Consensus 841 ~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~~ 880 (1560)
T PTZ00243 841 QVHVVPRADYVVALGDGRVEFSGSSADFMRT--SLYATLAAE 880 (1560)
T ss_pred CHHHHHhCCEEEEEECCEEEEecCHHHHHhC--hHHHHHHHh
Confidence 9999999999999999999999999999864 568887764
No 49
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-50 Score=460.42 Aligned_cols=229 Identities=21% Similarity=0.352 Sum_probs=206.2
Q ss_pred CCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCC
Q 000904 978 PNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDIS 1052 (1232)
Q Consensus 978 ~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~ 1052 (1232)
.+||..|.|+++|++++|+++.+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4699999999999999997555679999999999999999999999999999999999997 57999999999997
Q ss_pred --CCChHhhhccEEEEccCCCCCcccHHhccC--C-CCCCCHHH-----HHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1053 --KLGLHDLRSRFGIIPQDPTLFNGTVRYNLD--P-LSQHTDQE-----IWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1053 --~i~l~~LR~~i~iVpQdP~LF~gTIr~NLd--p-~~~~sd~e-----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
++++.++|++++||||+|.+|++|+++|++ | +..+++++ +.++++.+++.+ ++++.+++.|.+
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~ 225 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNA 225 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCccc
Confidence 456778999999999999999999999998 3 22344444 456778887653 456778899999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||||+|||||++++|+||+|||||++||+++.+.+++.|++.++++|+|+||||++++.+ ||||+||++|+|+|.
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999998889999999999999998 999999999999999
Q ss_pred cChhHHHhhcCC
Q 000904 1202 DEPMKLMKREGS 1213 (1232)
Q Consensus 1202 g~p~~Ll~~~~~ 1213 (1232)
|+|+++++++..
T Consensus 306 g~~~~l~~~~~~ 317 (329)
T PRK14257 306 GETKTIFIHPKN 317 (329)
T ss_pred CCHHHHhcCCCc
Confidence 999999987654
No 50
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-48 Score=430.00 Aligned_cols=222 Identities=30% Similarity=0.483 Sum_probs=187.6
Q ss_pred eEEEEeeEeEecC---------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC
Q 000904 985 KVDICDLQIRYRP---------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~---------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1055 (1232)
-++.+|+.+.|+- +.-.+.+||||++++||.+||||+||||||||-++|+|++++. |+|.++|.||...+
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 5888999998841 1124789999999999999999999999999999999999876 99999999999887
Q ss_pred hHh---hhccEEEEccCCC--CC-cccHHhccC-------CCC--CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1056 LHD---LRSRFGIIPQDPT--LF-NGTVRYNLD-------PLS--QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1056 l~~---LR~~i~iVpQdP~--LF-~gTIr~NLd-------p~~--~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
.++ +|+++.+|+|||+ |- ..||-+-+. |.. ...|+.+.+||+.+||+...... -+
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~R----------YP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNR----------YP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhc----------CC
Confidence 554 6899999999995 21 224443332 111 12356789999999998766554 25
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
+.+|||||||++||||++-+|++++||||||+||..-...|.+.|++. ..+-+-++||||+..|+. ||+|+||.+||
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 689999999999999999999999999999999999999998888863 347899999999999988 99999999999
Q ss_pred EEEecChhHHHhhcCCHHHH
Q 000904 1198 LAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|||.|+.++++++|...|.+
T Consensus 505 iVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHH
Confidence 99999999999999887754
No 51
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-49 Score=492.05 Aligned_cols=225 Identities=24% Similarity=0.336 Sum_probs=189.2
Q ss_pred eEEEEeeEeEecCC---------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC
Q 000904 985 KVDICDLQIRYRPD---------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~---------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1055 (1232)
-++++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 48999999999521 135999999999999999999999999999999999999999999999999998775
Q ss_pred hH---hhhccEEEEccCC--CCCc-ccHHhccCC-C---CCCC----HHHHHHHHHHcCCc-HHHHhhccCCcccccCCC
Q 000904 1056 LH---DLRSRFGIIPQDP--TLFN-GTVRYNLDP-L---SQHT----DQEIWEVLAKCHLG-EAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1056 l~---~LR~~i~iVpQdP--~LF~-gTIr~NLdp-~---~~~s----d~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G 1120 (1232)
.. .+|++|+||||+| .++. -||.+|+.. . +... ++++.++|+.+++. +..... .
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----------~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-----------P 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-----------c
Confidence 43 4577899999999 3664 599999852 1 1111 24577888888885 333222 3
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
.+||||||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. .+.|||+||||++.+.+ ||||++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999998743 37899999999999987 99999999999
Q ss_pred EEEecChhHHHhhcCCHHH-HHHH
Q 000904 1198 LAEYDEPMKLMKREGSLFG-QLVR 1220 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~~~f~-~l~~ 1220 (1232)
|+|.|++++++.++...|. .++.
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999987655554 4544
No 52
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.3e-48 Score=479.72 Aligned_cols=217 Identities=26% Similarity=0.435 Sum_probs=183.3
Q ss_pred eEEEEeeEeEecC---------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC
Q 000904 985 KVDICDLQIRYRP---------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~---------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~ 1055 (1232)
.++++|++++|.. +...+|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+|.+||.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 4899999999952 12469999999999999999999999999999999999984 8999999999998776
Q ss_pred hHh---hhccEEEEccCCC--CCc-ccHHhccCCC----C-CC----CHHHHHHHHHHcCCcH-HHHhhccCCcccccCC
Q 000904 1056 LHD---LRSRFGIIPQDPT--LFN-GTVRYNLDPL----S-QH----TDQEIWEVLAKCHLGE-AVREKENGLDSLVVED 1119 (1232)
Q Consensus 1056 l~~---LR~~i~iVpQdP~--LF~-gTIr~NLdp~----~-~~----sd~eI~~aL~~~~L~~-~i~~~p~gLdt~v~e~ 1119 (1232)
.++ +|++++|+||+|. +|. .|+++|+... . .. .++++.++|+.+++.+ .... .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-----------Y 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-----------C
Confidence 543 4778999999983 665 5999998531 1 01 1345778888888863 2222 2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCC
Q 000904 1120 GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDG 1196 (1232)
Q Consensus 1120 G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G 1196 (1232)
..+||||||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. .++|||+||||++.+.+ ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 35799999999999999999999999999999999999999999998753 37899999999999987 9999999999
Q ss_pred EEEEecChhHHHhhcCC
Q 000904 1197 KLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1197 ~vvE~g~p~~Ll~~~~~ 1213 (1232)
++++.|+++++++++..
T Consensus 503 ~i~~~~~~~~~~~~~~~ 519 (529)
T PRK15134 503 EVVEQGDCERVFAAPQQ 519 (529)
T ss_pred EEEEEcCHHHHhcCCCC
Confidence 99999999999876543
No 53
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-48 Score=400.21 Aligned_cols=217 Identities=29% Similarity=0.409 Sum_probs=193.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC-CChHhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK-LGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-i~l~~LR~~i 1063 (1232)
-|+++|++.+|.. ..||+|||++|++||.+.|+||||||||||+++|.||.+|++|+|.|||.++.. .++..+|+++
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 3899999999974 469999999999999999999999999999999999999999999999987743 3788999999
Q ss_pred EEEccCCCCCcc-cHHhccCCCC----CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS----QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
|+|+|+..||.. |+.+|+.... ..+ ++...+.|+++||.|.....|. +||||||||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999965 9999985211 122 3345678999999988777664 7999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
|||..+|+++++|||||+||++.-..+.+.+++.. .|.|+|+|||.+.+.++ +|||+.||+|+++|.|+|++++.++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999998855 47899999999999999 89999999999999999999999876
Q ss_pred CH
Q 000904 1213 SL 1214 (1232)
Q Consensus 1213 ~~ 1214 (1232)
..
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 43
No 54
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-47 Score=411.59 Aligned_cols=227 Identities=26% Similarity=0.428 Sum_probs=197.8
Q ss_pred EEEEeeEeEecCC---CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---hHhh
Q 000904 986 VDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDL 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~~~---~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~L 1059 (1232)
|+++||++.|... ...+|+||||+|++||..||||+||||||||++++.||-+|++|+|.+||.|+..++ ++.+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 346999999999999999999999999999999999999999999999999987775 6777
Q ss_pred hccEEEEccCCCCCc-ccHHhccC-CCC--CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1060 RSRFGIIPQDPTLFN-GTVRYNLD-PLS--QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~-gTIr~NLd-p~~--~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
|++||+|+|++.|++ -||.+|+. |.. ..+. +++.+.|+.+||.|....-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 899999999999996 79999996 432 2333 44678899999887655544 58999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+|||||..+|+||+.|||||+||++|-+.|.+.|++. .-|-|+++|||-++.|++ ||||.||++|+++|.|+-.+++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999988763 247899999999999999 9999999999999999999999
Q ss_pred hhcCC-HHHHHHHHHH
Q 000904 1209 KREGS-LFGQLVREYW 1223 (1232)
Q Consensus 1209 ~~~~~-~f~~l~~~~~ 1223 (1232)
.+|.. .=++++.+..
T Consensus 231 ~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 231 ANPKHAITQEFIGETL 246 (339)
T ss_pred cCcchHHHHHHHHhhc
Confidence 98854 4455555443
No 55
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-46 Score=462.95 Aligned_cols=219 Identities=26% Similarity=0.429 Sum_probs=179.5
Q ss_pred eEEEEeeEeEecC---CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEEC-Ce---eCCCCC--
Q 000904 985 KVDICDLQIRYRP---DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD-GI---DISKLG-- 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~---~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~ID-G~---dI~~i~-- 1055 (1232)
.++++|++++|.. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |. ++...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999952 23469999999999999999999999999999999999999999999996 64 344332
Q ss_pred -hHhhhccEEEEccCCCCCc-ccHHhccCC-CC-CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1056 -LHDLRSRFGIIPQDPTLFN-GTVRYNLDP-LS-QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1056 -l~~LR~~i~iVpQdP~LF~-gTIr~NLdp-~~-~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
...+|++++|+||+|.+|. .|+++|+.. .. .. .++++.++|+.+++.+.-. +........+|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKA------EEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccc------hhhhhCChhhCCHHH
Confidence 2356778999999998886 499999852 11 11 2345677888888753100 000112345799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|+|
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998753 37899999999999987 999999999999999999
Q ss_pred hHHHh
Q 000904 1205 MKLMK 1209 (1232)
Q Consensus 1205 ~~Ll~ 1209 (1232)
+++++
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 98865
No 56
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=462.35 Aligned_cols=213 Identities=22% Similarity=0.314 Sum_probs=177.4
Q ss_pred eEEEEeeEeEecC-CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-CCccEEEECCeeCCCCCh-Hhhhc
Q 000904 985 KVDICDLQIRYRP-DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-PAGGKILVDGIDISKLGL-HDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~-~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-p~~G~I~IDG~dI~~i~l-~~LR~ 1061 (1232)
.++++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.|+...+. +..|.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999942 23469999999999999999999999999999999999999 599999999999875543 34577
Q ss_pred cEEEEccCC---CCC-cccHHhccCCC--CC------CC----HHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCCCC
Q 000904 1062 RFGIIPQDP---TLF-NGTVRYNLDPL--SQ------HT----DQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1062 ~i~iVpQdP---~LF-~gTIr~NLdp~--~~------~s----d~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
+++|+||+| .+| ..|+.+|+... .. .+ .+++.++++.+++. +.. ......||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS 407 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASP-----------ELAIARLS 407 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCc-----------ccccccCC
Confidence 899999997 355 45999998621 11 11 13466777777764 221 22345799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||||||++||||++.+|+||||||||++||..+.+.+.+.|++.. +++|||+||||++.+.+ ||++++|++|+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999988742 47899999999999987 9999999999999999
Q ss_pred ChhHHH
Q 000904 1203 EPMKLM 1208 (1232)
Q Consensus 1203 ~p~~Ll 1208 (1232)
+++++.
T Consensus 488 ~~~~~~ 493 (506)
T PRK13549 488 INHNLT 493 (506)
T ss_pred ccccCC
Confidence 988774
No 57
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=462.96 Aligned_cols=207 Identities=21% Similarity=0.328 Sum_probs=173.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
.++++|++++|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998763 38999999999999999999999999999999999999999999999999876543 4567889
Q ss_pred EEEccCC---CCCc-ccHHhccCCCCC------------CC----HHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCC
Q 000904 1064 GIIPQDP---TLFN-GTVRYNLDPLSQ------------HT----DQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1064 ~iVpQdP---~LF~-gTIr~NLdp~~~------------~s----d~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~n 1122 (1232)
+|+||+| .+|. -|+++|+..... .. .+++.++++..++. +.. ......
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~ 409 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-----------NQNITE 409 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-----------cCcccc
Confidence 9999985 4665 499999863210 01 12456777777663 221 223457
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
||||||||++|||||+++|+||||||||++||..+.+.+.+.|++. .++.|||+||||++.+.. ||+|++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999874 347899999999999876 99999999999999
Q ss_pred ecChhH
Q 000904 1201 YDEPMK 1206 (1232)
Q Consensus 1201 ~g~p~~ 1206 (1232)
.+++.+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 887633
No 58
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-45 Score=452.16 Aligned_cols=200 Identities=20% Similarity=0.326 Sum_probs=173.8
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIG 385 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEE
Confidence 6999999999963 4599999999999999999999999999999999999999999999998 35799
Q ss_pred EEccCCC--CC-cccHHhccCCCC--CCCHHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1065 IIPQDPT--LF-NGTVRYNLDPLS--QHTDQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1065 iVpQdP~--LF-~gTIr~NLdp~~--~~sd~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
|+||+|. ++ ..|+++|+..+. ...++++.++|+..++. +.... ...+||||||||++||||++
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKK-----------SVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcC-----------cccccCHHHHHHHHHHHHHh
Confidence 9999984 44 359999985332 23456788899998884 33222 24589999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHHhh
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLA-EYDEPMKLMKR 1210 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv-E~g~p~~Ll~~ 1210 (1232)
++|+||||||||++||+.+.+.+.+.|++. ++|||+|||+++.+.. ||+|++|++|+++ +.|++.++++.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999999874 5699999999999987 9999999999998 77899888765
No 59
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.5e-45 Score=411.34 Aligned_cols=240 Identities=51% Similarity=0.840 Sum_probs=223.1
Q ss_pred CcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhc
Q 000904 982 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061 (1232)
Q Consensus 982 ~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1061 (1232)
..|.|+++|++++|+.....+|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35789999999999653356999999999999999999999999999999999999999999999999999988889999
Q ss_pred cEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1062 RFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875444567788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+++++.|+.++.+
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999988666899999999999999999999999999999999999998877888887754
No 60
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.3e-46 Score=455.67 Aligned_cols=207 Identities=20% Similarity=0.326 Sum_probs=174.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
.++++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 489999984 37999999999999999999999999999999999999999999999999987664 3467789
Q ss_pred EEEccCC---CCC-cccHHhccCCC-----CC----CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1064 GIIPQDP---TLF-NGTVRYNLDPL-----SQ----HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1064 ~iVpQdP---~LF-~gTIr~NLdp~-----~~----~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
+|+||+| .+| ..|+++|+... .. .+ ++++.++++.+++.+ .........||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG 399 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT----------PSMEQAIGLLSGG 399 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC----------CCccCchhhCCHH
Confidence 9999997 344 46999998631 00 11 234667777776631 1122334579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
||||++|||||+.+|+||||||||++||..+.+.+.+.|++.. +++|||+||||++.+.+ ||+|++|++|++++.+++
T Consensus 400 ekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~ 479 (501)
T PRK10762 400 NQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTR 479 (501)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999998753 47899999999999987 999999999999999998
Q ss_pred hHHH
Q 000904 1205 MKLM 1208 (1232)
Q Consensus 1205 ~~Ll 1208 (1232)
+++.
T Consensus 480 ~~~~ 483 (501)
T PRK10762 480 EQAT 483 (501)
T ss_pred ccCC
Confidence 8764
No 61
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-46 Score=454.97 Aligned_cols=208 Identities=19% Similarity=0.292 Sum_probs=174.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~i 1063 (1232)
.++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+..|+++
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 5889999842 4899999999999999999999999999999999999999999999999987543 34567889
Q ss_pred EEEccCCC---CC-cccHHhccCCCC--C-------CC----HHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCCCCh
Q 000904 1064 GIIPQDPT---LF-NGTVRYNLDPLS--Q-------HT----DQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1064 ~iVpQdP~---LF-~gTIr~NLdp~~--~-------~s----d~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
+|+||+|. +| ..|+.+|+.... . .. ++++.++|+.+++. +. ......+|||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSg 399 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS-----------REQLIMNLSG 399 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCC-----------ccCccccCCH
Confidence 99999983 55 579999986311 0 01 23466777777663 22 1223458999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1126 GQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
|||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. .+.|||+||||++.+.. ||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999997743 47899999999999977 99999999999999999
Q ss_pred hhHHHh
Q 000904 1204 PMKLMK 1209 (1232)
Q Consensus 1204 p~~Ll~ 1209 (1232)
+++...
T Consensus 480 ~~~~~~ 485 (501)
T PRK11288 480 REQATE 485 (501)
T ss_pred cccCCH
Confidence 887653
No 62
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.5e-46 Score=454.79 Aligned_cols=213 Identities=22% Similarity=0.285 Sum_probs=175.1
Q ss_pred eEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-CccEEEECCeeCCCCCh-Hhhhc
Q 000904 985 KVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-AGGKILVDGIDISKLGL-HDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-~~G~I~IDG~dI~~i~l-~~LR~ 1061 (1232)
.++++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999432 23599999999999999999999999999999999999995 89999999999875443 56788
Q ss_pred cEEEEccCC---CCCc-ccHHhccCCC-----CC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCCh
Q 000904 1062 RFGIIPQDP---TLFN-GTVRYNLDPL-----SQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1062 ~i~iVpQdP---~LF~-gTIr~NLdp~-----~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
+++|+||++ .+|. .|+++|+... .. .. .+++.++|+++++.+. ..+ .....|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~----~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPF----LPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------Ccc----CccccCCH
Confidence 999999997 3565 5999998641 11 11 2346677777776321 112 22357999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1126 GQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
|||||++|||||+++|++|||||||++||..+.+.+.+.|++.. ++.|||+||||++.+.+ ||+|++|++|+++...+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999998888743 47899999999999987 89999999999998776
Q ss_pred hhHH
Q 000904 1204 PMKL 1207 (1232)
Q Consensus 1204 p~~L 1207 (1232)
..++
T Consensus 487 ~~~~ 490 (500)
T TIGR02633 487 NHAL 490 (500)
T ss_pred cccC
Confidence 5543
No 63
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-46 Score=379.02 Aligned_cols=219 Identities=25% Similarity=0.415 Sum_probs=198.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc-----cEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG-----GKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~-----G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|+++-|. ...+|+|||++|++++.+|++|||||||||++++|.|+.+... |+|.+||.||-+ ++.-
T Consensus 7 ~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 589999999996 4569999999999999999999999999999999999999875 999999999966 5789
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC-------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS-------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~-------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+||+++|+|+|.|.-|..||.+|+...- ..-|+-+.++|+++.|||.|.+. | .+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr---L----~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR---L----HKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH---h----hCCccCCChhHHHH
Confidence 9999999999999999999999996321 12245688999999999998764 2 34567899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||||.-+|+||+||||||+||+-+-..|.+.|.+..++-|||+|||.+.-... +|+...+..|+++|+|+.++++.
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999998889999999999998877 89999999999999999999998
Q ss_pred hcC
Q 000904 1210 REG 1212 (1232)
Q Consensus 1210 ~~~ 1212 (1232)
+|.
T Consensus 238 ~P~ 240 (253)
T COG1117 238 NPK 240 (253)
T ss_pred Ccc
Confidence 874
No 64
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.5e-46 Score=453.76 Aligned_cols=208 Identities=19% Similarity=0.329 Sum_probs=174.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh-hhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1063 (1232)
.++++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+..+ .|.++
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999998776654 46789
Q ss_pred EEEccCC---CCCc-ccHHhccCCC-----C---CC--CHHHHHHHHHHcCCc-HHHHhhccCCcccccCCCCCCChhHH
Q 000904 1064 GIIPQDP---TLFN-GTVRYNLDPL-----S---QH--TDQEIWEVLAKCHLG-EAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1064 ~iVpQdP---~LF~-gTIr~NLdp~-----~---~~--sd~eI~~aL~~~~L~-~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
+|+||+| .+|. .|+.+|+..+ . .. .++++.++|+.+++. +. .......||||||
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgG~k 409 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH-----------AEQAARTLSGGNQ 409 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC-----------ccCccccCCcHHH
Confidence 9999996 3665 4899997421 1 11 123356677776663 22 2223457999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||++|||||+.+|+||||||||++||..+.+.+.+.|++.. +++|||+||||++.+.+ ||+|++|++|+++..|++++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998743 47899999999999987 99999999999999999988
Q ss_pred HHhh
Q 000904 1207 LMKR 1210 (1232)
Q Consensus 1207 Ll~~ 1210 (1232)
+..+
T Consensus 490 ~~~~ 493 (510)
T PRK15439 490 INVD 493 (510)
T ss_pred CCHH
Confidence 7654
No 65
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.8e-44 Score=440.08 Aligned_cols=203 Identities=18% Similarity=0.242 Sum_probs=168.8
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..++++|++++|.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .++
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 35999999999953 3699999999999999999999999999999999999999999999964 2 269
Q ss_pred EEEccCC-CCCc-ccHHhccCCCCC-----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1064 GIIPQDP-TLFN-GTVRYNLDPLSQ-----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1064 ~iVpQdP-~LF~-gTIr~NLdp~~~-----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+|+||++ .++. -|+++|+..... ..+++..++|+..++.+... .....+||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQ----------QKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHh----------cCchhhCCHHHHHHHHHHHH
Confidence 9999997 5554 599999863211 12345567788877753211 11235799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeC-CEEEE-ecChhHHHhhc
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISD-GKLAE-YDEPMKLMKRE 1211 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~-G~vvE-~g~p~~Ll~~~ 1211 (1232)
++.+|++|||||||++||..+...+.+.|++. + .|||+|||+++.+.. ||+|++|++ |++.+ .|+++++++++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999874 3 589999999999887 999999986 88875 67788777654
No 66
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.5e-43 Score=443.60 Aligned_cols=199 Identities=18% Similarity=0.258 Sum_probs=165.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..++++|++++|++ .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 36999999999953 34699999999999999999999999999999999999999999999876 3579
Q ss_pred EEEccCCCCCcccHHhccC-----CCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1064 GIIPQDPTLFNGTVRYNLD-----PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLd-----p~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
+|+||++. ...++.+|.. .+...+++++.++|+.+++.+..... .+.+||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~----------~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcC----------CccccCHHHHHHHHHHHHHh
Confidence 99999973 1223333321 12234578899999999986432222 24589999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHH
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLA-EYDEPMKL 1207 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv-E~g~p~~L 1207 (1232)
++|++|||||||++||..+.+.+.+.|++. ++|||+||||++.+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999998863 4599999999999987 9999999999998 45666654
No 67
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-44 Score=446.67 Aligned_cols=200 Identities=21% Similarity=0.326 Sum_probs=168.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ ..+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-----------GIKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-----------CEEEE
Confidence 5999999999953 4699999999999999999999999999999999999999999999974 13799
Q ss_pred EEccCC--CCC-cccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1065 IIPQDP--TLF-NGTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1065 iVpQdP--~LF-~gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
|+||++ .+. ..|+.+++... ....++++.++|+.+++.+..... ....||||||||++|||+++++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTE----------ETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcC----------chhhCCHHHHHHHHHHHHHhcC
Confidence 999986 233 34777776322 223456788899998885322222 2347999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEE-EecChhHHHh
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLA-EYDEPMKLMK 1209 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv-E~g~p~~Ll~ 1209 (1232)
|++|||||||++||..+...+.+.|++. ++|||+||||++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999874 4699999999999987 9999999999998 5688887743
No 68
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.7e-44 Score=400.18 Aligned_cols=234 Identities=32% Similarity=0.549 Sum_probs=214.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+.+.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+..++|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999996544569999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
+||+|.+|+.|+++|+.... ..+.+++.++++..++.+.+..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997533 24566778888889999999999999999888899999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
||||||++||..+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999987668999999999999988999999999999999999999876 577777654
No 69
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.6e-45 Score=449.00 Aligned_cols=206 Identities=17% Similarity=0.264 Sum_probs=168.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-CccEEEECCeeCCC-CChHhhhcc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-AGGKILVDGIDISK-LGLHDLRSR 1062 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-~~G~I~IDG~dI~~-i~l~~LR~~ 1062 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.++|.++.. ......|++
T Consensus 260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 5999999999963 3599999999999999999999999999999999998876 69999999987632 234456789
Q ss_pred EEEEccCCCCCc---ccHHhccCC-C-------CCCC---HHHHHHHHHHcCCcH-HHHhhccCCcccccCCCCCCChhH
Q 000904 1063 FGIIPQDPTLFN---GTVRYNLDP-L-------SQHT---DQEIWEVLAKCHLGE-AVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1063 i~iVpQdP~LF~---gTIr~NLdp-~-------~~~s---d~eI~~aL~~~~L~~-~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
++|+||+|.++. .|+++++.. + .... ++++.++++.+++.+ .... ...+|||||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGq 406 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADA-----------PFHSLSWGQ 406 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccC-----------chhhCCHHH
Confidence 999999986542 467766532 1 1111 245778888888764 3222 235799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-D-CTVITVAHRIPTVMD--CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~-~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~g~ 1203 (1232)
|||++|||||+++|++|+|||||++||+++.+.+.+.|++..+ + .|||+||||++.+.+ ||++++|++|++++.-+
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999999999999999999999987533 3 479999999999975 79999999999988643
No 70
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-45 Score=381.70 Aligned_cols=217 Identities=29% Similarity=0.439 Sum_probs=194.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+|+||+++|. ...+++|+||+|++||.+.++|+|||||||+++++.|+++|++|+|+|||.||++++..+||++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 78999999997 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCcc-cHHhccCCCC---CCC----HHHHHHHHHHcCCcH--HHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS---QHT----DQEIWEVLAKCHLGE--AVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~---~~s----d~eI~~aL~~~~L~~--~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|-|.--||.. ||.+|+.... ..+ ++++.|.|+.+||.. +..+.| ++|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999954 9999996322 223 456788899999964 444444 579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
||+.+|+||+||||.++||+-|...+|+-+.+.- -++|+|+||||++.... +|||.||++|+++.+|+|++++.+|.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999999876532 37899999999988766 99999999999999999999999987
Q ss_pred CHH
Q 000904 1213 SLF 1215 (1232)
Q Consensus 1213 ~~f 1215 (1232)
..|
T Consensus 229 n~F 231 (309)
T COG1125 229 NDF 231 (309)
T ss_pred HHH
Confidence 666
No 71
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.9e-44 Score=394.18 Aligned_cols=221 Identities=57% Similarity=0.977 Sum_probs=208.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
|.++++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975445699999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+|+||+|.+|++|+++|++++....++++.++++..++.+.+..+|.|+++...+.+.+||+|||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999997766778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecCh
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p 1204 (1232)
|+|||||++||..+.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987667899999999999999999999999999998764
No 72
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.7e-43 Score=433.26 Aligned_cols=201 Identities=19% Similarity=0.261 Sum_probs=166.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ + .+++
T Consensus 322 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~ 388 (552)
T TIGR03719 322 VIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLA 388 (552)
T ss_pred EEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEE
Confidence 5999999999963 4699999999999999999999999999999999999999999999965 2 2699
Q ss_pred EEccCCC-CC-cccHHhccCCCC---CC--CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1065 IIPQDPT-LF-NGTVRYNLDPLS---QH--TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1065 iVpQdP~-LF-~gTIr~NLdp~~---~~--sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
|+||++. ++ ..|+++|+.... .. .+.+..++++.+++.+... .....+||||||||++|||||
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQ----------QKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHh----------cCchhhCCHHHHHHHHHHHHH
Confidence 9999973 55 459999986321 11 2344567787777743211 123357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeC-CEEEEe-cChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISD-GKLAEY-DEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~-G~vvE~-g~p~~Ll~~ 1210 (1232)
+.+|++|||||||++||..+.+.+.+.|++. . +|||+|||+++.+.. ||+|++|++ |+++++ |+.++..+.
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 9999999999999999999999999999975 3 589999999999987 899999997 688754 666666544
No 73
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.7e-43 Score=437.78 Aligned_cols=199 Identities=23% Similarity=0.313 Sum_probs=165.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 4899999999953 46999999999999999999999999999999999999999999999 4322 699
Q ss_pred EEccCC-CCCc-ccHHhccCCCC-CC--C--HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1065 IIPQDP-TLFN-GTVRYNLDPLS-QH--T--DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1065 iVpQdP-~LF~-gTIr~NLdp~~-~~--s--d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
|++|++ .++. .|+++|+.... .. . +.++.+.|+.+++.+..... ....||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMT----------PVKALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhC----------hhhhCCHHHHHHHHHHHHH
Confidence 999987 3554 49999986321 11 1 45677888888875322222 2347999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe-CCEEEEe-cChhHHH
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS-DGKLAEY-DEPMKLM 1208 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~-~G~vvE~-g~p~~Ll 1208 (1232)
+++|++|||||||++||..+...+.+.|++. ++|||+||||++.+.. ||+|++|+ +|++.++ |+.++-+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999999863 5699999999999977 99999998 8999986 4444443
No 74
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=442.84 Aligned_cols=210 Identities=20% Similarity=0.336 Sum_probs=170.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i 1063 (1232)
.|+++|++++| +.+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.+
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 58999999875 2499999999999999999999999999999999999999999999999999876654 357789
Q ss_pred EEEccCCC---CCc-ccHHhc-----cCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1064 GIIPQDPT---LFN-GTVRYN-----LDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1064 ~iVpQdP~---LF~-gTIr~N-----Ldp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
+|+||++. +|. .|+++| +... +..+ ++++.+.++..++.+. .......+||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG 395 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP----------GHRTQIGSLSGG 395 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC----------CcccccccCCcH
Confidence 99999963 554 466555 3211 1111 2334556666555310 123345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
||||++||||++++|+||||||||++||..+.+.+.+.|++.. ++.|||+||||++.+.. |||+++|++|+++..+++
T Consensus 396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999997642 47899999999999977 899999999999988876
Q ss_pred hHHH
Q 000904 1205 MKLM 1208 (1232)
Q Consensus 1205 ~~Ll 1208 (1232)
+++.
T Consensus 476 ~~~~ 479 (491)
T PRK10982 476 KTTT 479 (491)
T ss_pred ccCC
Confidence 5443
No 75
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-44 Score=374.55 Aligned_cols=227 Identities=27% Similarity=0.413 Sum_probs=190.0
Q ss_pred eEEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhhhc
Q 000904 985 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~ 1061 (1232)
.++++|+++.|+... .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+..... -+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999996432 24999999999999999999999999999999999999999999999997765543 346788
Q ss_pred cEEEEccCCC--CC-cccHHhccC-CCCC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1062 RFGIIPQDPT--LF-NGTVRYNLD-PLSQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1062 ~i~iVpQdP~--LF-~gTIr~NLd-p~~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
.+.+|+|||. |= .-||++-|. |... ...++++++|+.+||.+..... .+.+||||||||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R----------~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR----------RPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhc----------CchhcChhHHHHHHH
Confidence 9999999995 21 235665542 3221 2456699999999998766543 345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||.-+|++||+|||||+||....+.|.+.+.+..+ +-|.|+||||+..+.. ||||+||++|+++|.++..+++..
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999998877544 5599999999999998 999999999999999999999987
Q ss_pred cCCHHHHHHHH
Q 000904 1211 EGSLFGQLVRE 1221 (1232)
Q Consensus 1211 ~~~~f~~l~~~ 1221 (1232)
+...|.+..-+
T Consensus 233 ~~h~ytr~Ll~ 243 (252)
T COG1124 233 PSHPYTRELLE 243 (252)
T ss_pred CccHHHHHHHH
Confidence 66666554443
No 76
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.4e-42 Score=413.22 Aligned_cols=202 Identities=25% Similarity=0.334 Sum_probs=176.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
-.++++|+++.|.++ +++++++||.|.+|+|||||||||+|||||+++|.|...|.+|+|.+.- .-++
T Consensus 320 ~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~i 387 (530)
T COG0488 320 LVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----------TVKI 387 (530)
T ss_pred eeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----------ceEE
Confidence 359999999999654 5799999999999999999999999999999999999999999999864 2379
Q ss_pred EEEccCC-CCC-cccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1064 GIIPQDP-TLF-NGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1064 ~iVpQdP-~LF-~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
||.+|+- .++ +.|+-+++.... +..+.+++..|.++++...-...|- ..||||||-|+.||+.++.+
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v----------~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPV----------GVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCch----------hhcCHhHHHHHHHHHHhccC
Confidence 9999998 344 348888886544 3348899999999999876655544 37999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEe-cChhHHHhh
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEY-DEPMKLMKR 1210 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~-g~p~~Ll~~ 1210 (1232)
|++|||||||++||.+|.+.+.++|.+ .+.|||+||||.+++.. |++|+++++ ++.++ |+.++..+.
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999999999999999999986 46799999999999998 899999999 88887 777776654
No 77
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-43 Score=388.94 Aligned_cols=231 Identities=32% Similarity=0.552 Sum_probs=210.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+....++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999996433369999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
+||+|.+|..|+++|+.... ....+++.+.++..++.+.+..+|.|+++.....+.+||+|||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997543 34566777888889999999999989999988889999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHH
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
+|||||++||..+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|+++++.++ .+.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 999999999999999999999987678899999999999988999999999999999999999875 455554
No 78
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.1e-43 Score=385.33 Aligned_cols=213 Identities=28% Similarity=0.451 Sum_probs=188.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+ .+++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.|+.+++.+++.++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 378999999996 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC-CCcccHHhccC----C----CCCCC--H-HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1065 IIPQDPT-LFNGTVRYNLD----P----LSQHT--D-QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1065 iVpQdP~-LF~gTIr~NLd----p----~~~~s--d-~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
||||++. -|.-||+|-+. | +...+ | +.+.++|+.+++.++..+. -..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 9999974 45668876553 2 22222 3 3578899999998876543 2479999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|+||+|||||++||....-.+.+.+++.. ++.|+|+|.||++.... ||++++|++|+++..|+|++.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999998754 47999999999998876 99999999999999999999987
Q ss_pred h
Q 000904 1210 R 1210 (1232)
Q Consensus 1210 ~ 1210 (1232)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 5
No 79
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=384.77 Aligned_cols=215 Identities=30% Similarity=0.451 Sum_probs=194.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC-CCChHhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS-KLGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~-~i~l~~LR~~i 1063 (1232)
.++++|++|+|.++ .++|+++|++|++||.++|+|+||||||||+++|.|+++|++|+|.+||.+++ +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48899999999876 68999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
|+|+|+| ++|..||.+.+.... ..+. +.+.++|+.+++.++... .+.+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHhh
Confidence 9999999 799999999986322 1333 447789999998877433 3468999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
.+|+.+|++||||||||+||+...+.+.+.+++..+ +.|+|+||||++.+.+ |||++||++|+++.+|+|++++++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999998654 4699999999999999 9999999999999999999999864
No 80
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.1e-43 Score=404.93 Aligned_cols=224 Identities=27% Similarity=0.443 Sum_probs=193.4
Q ss_pred EEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---hh
Q 000904 986 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1060 (1232)
|+++|++++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887554 58
Q ss_pred ccEEEEccCCCCCc-ccHHhccCC-C--CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPTLFN-GTVRYNLDP-L--SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~-gTIr~NLdp-~--~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++|+||||++.+|. .|+++|+.. . ...+ ++++.++|+.+++.+..... +.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999985 799999962 1 1122 34577889999987765443 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+.+|+||+||||||+||+++...+.+.|++..+ +.|||+|||+++.+.+ ||+|++|++|+++|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999988543 7899999999999987 99999999999999999999998
Q ss_pred hcCCHH-HHHHH
Q 000904 1210 REGSLF-GQLVR 1220 (1232)
Q Consensus 1210 ~~~~~f-~~l~~ 1220 (1232)
++...+ ++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 765444 44443
No 81
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.5e-43 Score=378.92 Aligned_cols=207 Identities=57% Similarity=0.955 Sum_probs=188.3
Q ss_pred CCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh
Q 000904 980 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 980 wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L 1059 (1232)
||..+.++++|++++|+....++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 88889999999999996433469999999999999999999999999999999999999999999999999998888888
Q ss_pred hccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1060 RSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|++++|+||+|.+|++|+++|+..+...+++++.++++ +...+.+||+|||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998665555666655554 234567899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecCh
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p 1204 (1232)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||++++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987668999999999999988999999999999998875
No 82
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-43 Score=384.84 Aligned_cols=226 Identities=36% Similarity=0.614 Sum_probs=208.7
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
|.++++|++++|.. .+++++|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46899999999963 24599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+|+||+|.+|.+|+++|+.... ...++++.++++.+++.+....+|.|+++.+.....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997543 345677888999999999999999999999988899999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+|+|||||++||..+.+.+.+.|++..++.|||+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999986568899999999999988999999999999999998888765
No 83
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-42 Score=385.32 Aligned_cols=233 Identities=33% Similarity=0.610 Sum_probs=213.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+.+ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++++.+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999633 459999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
+||+|.+|++|+++|+.... ..+++++.++++.+++.+.+..+|.|+++.+...+.+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999996432 35677788899999999999999999999999899999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHHH
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
||||||++||.++.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++.++ .+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 999999999999999999999876557899999999999988999999999999999999998875 567766554
No 84
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-42 Score=363.54 Aligned_cols=224 Identities=29% Similarity=0.467 Sum_probs=196.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~ 1061 (1232)
.|++++|+++|. ...|++||||+|++||..||+|+||||||||++++.|+..|++|+|.++|.||.+++- ..+|+
T Consensus 8 ~I~vr~v~~~fG--~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFG--DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecC--CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 599999999995 3569999999999999999999999999999999999999999999999999998875 45699
Q ss_pred cEEEEccCCCCCcc-cHHhccC-CCCCC---CHHHH----HHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLD-PLSQH---TDQEI----WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLd-p~~~~---sd~eI----~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++|+++|.--||+. ||+||+. |..+| +++++ ..-|+.+||...+.++- ++.||||.|.|++
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~----------PsELSGGM~KRva 155 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY----------PSELSGGMRKRVA 155 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC----------chhhcchHHHHHH
Confidence 99999999999965 9999996 44443 44444 45678888888755442 4589999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
||||+..+|+||++||||++||+-+...+-+.|++.. -+.|+|+||||++++.. ||||+++.||+|+-.|+|+++.+
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999988888887643 37899999999999988 89999999999999999999999
Q ss_pred hcCCHHHHHHH
Q 000904 1210 REGSLFGQLVR 1220 (1232)
Q Consensus 1210 ~~~~~f~~l~~ 1220 (1232)
.++-..++.++
T Consensus 236 sd~P~v~qf~~ 246 (263)
T COG1127 236 SDDPWVRQFFN 246 (263)
T ss_pred CCCHHHHHHhc
Confidence 87777666654
No 85
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.6e-42 Score=382.98 Aligned_cols=233 Identities=34% Similarity=0.610 Sum_probs=210.0
Q ss_pred EEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 986 VDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+....|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999642 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1065 IIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
|+||+|.+|+.|+++|+.... ....+++.+.++..++.+.+..+|.|+++.......+||||||||++|||||+++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999997432 3456677888888999999999999999999888999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHHH
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
|||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|+++++.+. .+..+.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHh
Confidence 9999999999999999999999876568899999999999988999999999999999999998865 44554443
No 86
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.4e-42 Score=377.54 Aligned_cols=219 Identities=34% Similarity=0.538 Sum_probs=200.0
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
|.++++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999964334699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEccCCCCCcccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+|+||+|.+|..|+++|+.... ..+++++.++++.+++.+.....|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999899999997432 245667888999999999999999999999988899999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g 1202 (1232)
+|||||||++||.++...+.+.|++..+++|||++||+++.+.-||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999865568999999999988779999999999998764
No 87
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-42 Score=374.39 Aligned_cols=209 Identities=26% Similarity=0.389 Sum_probs=182.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+.. +||+||||+|++||.+||+||||||||||+++++|+++|++|+|.++|.++++... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999744 49999999999999999999999999999999999999999999999988766432 57899
Q ss_pred EEccCC---CCCcccHHhccCCC--------C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1065 IIPQDP---TLFNGTVRYNLDPL--------S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1065 iVpQdP---~LF~gTIr~NLdp~--------~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
||||.. .-|.-||++-+... + ..+.+++.+||+++++.++..+ +- ..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i----------~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QI----------GELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-cc----------cccCcHHHHH
Confidence 999965 35788999876432 1 1234789999999999976543 22 3699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+.|||||+.+|++|+|||||+++|+.++..|.+.|++..+ ||||++|+||++.+.+ +|+|+.| |+++.-.|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999988654 8999999999999988 8999988 57788999999998
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 75
No 88
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.3e-42 Score=379.38 Aligned_cols=211 Identities=29% Similarity=0.487 Sum_probs=185.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc-----cCCccEEEECCeeCCCCC--hHh
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV-----EPAGGKILVDGIDISKLG--LHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~-----ep~~G~I~IDG~dI~~i~--l~~ 1058 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 478999999963 36999999999999999999999999999999999999 999999999999998876 667
Q ss_pred hhccEEEEccCCCCCcccHHhccCCCC----CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPLS----QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~~----~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.....+. +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 788999999999999889999996321 11 23567888998888765544321 45899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
++|||||+++|++|+|||||++||.++.+.+.+.|++..++.|||+||||++.+.+ ||+|++|++|++++.|+|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999986555899999999999876 999999999999999998764
No 89
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-42 Score=380.65 Aligned_cols=212 Identities=29% Similarity=0.425 Sum_probs=184.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1062 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 468999999953 469999999999999999999999999999999999999999999999999987764 567889
Q ss_pred EEEEccCCCCCcc-cHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
++|+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+..... ..+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-----------PAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHH
Confidence 9999999999876 999998632 1122 23467788888886554332 34799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||+++|+||||||||++||..+.+.+.+.|++.. .++|||+||||++.+.. ||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999999998754 37899999999999887 999999999999999999998764
No 90
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-42 Score=394.30 Aligned_cols=216 Identities=25% Similarity=0.342 Sum_probs=184.4
Q ss_pred eEEEEeeEeEecCC---CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC-------
Q 000904 985 KVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL------- 1054 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~---~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i------- 1054 (1232)
.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 59999999999642 23699999999999999999999999999999999999999999999999998753
Q ss_pred ---------ChHhhhccEEEEccCC--CCCcccHHhccCCCC---CCCHH----HHHHHHHHcCCcHHHHhhccCCcccc
Q 000904 1055 ---------GLHDLRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHTDQ----EIWEVLAKCHLGEAVREKENGLDSLV 1116 (1232)
Q Consensus 1055 ---------~l~~LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd~----eI~~aL~~~~L~~~i~~~p~gLdt~v 1116 (1232)
....+|++++|++|+| .+|++|+++|+.... ..+++ ++.++++.+++.+ ...
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~ 170 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------SYL 170 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------hHh
Confidence 3567899999999999 689999999995321 12333 3445555555531 223
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEe
Q 000904 1117 VEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAIS 1194 (1232)
Q Consensus 1117 ~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~ 1194 (1232)
...+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++. .+++|||+||||++.+.. ||+|++|+
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4566799999999999999999999999999999999999999999999864 247899999999998865 99999999
Q ss_pred CCEEEEecChhHHHhh
Q 000904 1195 DGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1195 ~G~vvE~g~p~~Ll~~ 1210 (1232)
+|++++.|+|++++++
T Consensus 251 ~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 251 KGKILKTGTPYEIFTD 266 (320)
T ss_pred CCEEEEeCCHHHHhcC
Confidence 9999999999998764
No 91
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=377.65 Aligned_cols=222 Identities=29% Similarity=0.468 Sum_probs=193.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4889999999953 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcccHHhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1065 IIPQDPTLFNGTVRYNLDPLS---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
|+||+|.+|..|+++|+.... ...++++.+.++.+++.+... ...+.+||||||||++||||++++|
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999997321 223456788888888852211 1235689999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHHHHH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l 1218 (1232)
++|||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+|++++.++...+.+.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 230 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHH
Confidence 9999999999999999999999998753 37899999999999887 99999999999999999999987655445443
No 92
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.4e-42 Score=347.30 Aligned_cols=207 Identities=27% Similarity=0.402 Sum_probs=185.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1062 (1232)
|+|+||+.+|+.+ +++|+||||+|++||.+-++|+||||||||+++|+|..+|++|+|.++|.|++.+.-+ -||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999866 7899999999999999999999999999999999999999999999999999988755 47999
Q ss_pred EEEEccCCCCC-cccHHhccC-CCC--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLF-NGTVRYNLD-PLS--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF-~gTIr~NLd-p~~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
||+|+||.-|. +-||.||+. |.. ... .+++.++|+.+||++....+|. +|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 99999999866 559999986 222 122 3467899999999999888875 6999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcC-eEEEEeCCEEEEecCh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCT-MVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~D-rVlVL~~G~vvE~g~p 1204 (1232)
||+..+|++|+-||||.+||+++...|.+.+.+. ..|.||++.|||.+.+.++. |++.+++|+++.++.+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 9999999999999999999999999999999874 35899999999999999965 8999999999987764
No 93
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.9e-40 Score=441.60 Aligned_cols=248 Identities=21% Similarity=0.293 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHhhc--cCCCCCCcccCCCCCCCCCCCcc--eEEEEeeEeEec--CCCCccceeeeEEEeCCcEEEE
Q 000904 945 CTLANYIISVERLNQYM--HVPSEAPEVVEDNRPPPNWPVVG--KVDICDLQIRYR--PDSPLVLKGISCTFEGGHKIGI 1018 (1232)
Q Consensus 945 ~~~e~~~~sveRi~~~~--~~~~e~~~~~~~~~~~~~wp~~G--~I~~~nvs~~Y~--~~~~~vL~~vsl~I~~GekvgI 1018 (1232)
.+.|+.+.++||..++. +.+.|.+.......++. ..| .++++|++++|+ ++.+.+|+|||++|++||++||
T Consensus 718 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI 794 (1394)
T TIGR00956 718 ETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTAL 794 (1394)
T ss_pred cccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEE
Confidence 34566677888888763 33333332221111221 134 478999999985 3346799999999999999999
Q ss_pred ECCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCChHhhhccEEEEccCCC-CCcccHHhccCCC------CCCC
Q 000904 1019 VGRTGSGKTTLIGALFRLVE---PAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT-LFNGTVRYNLDPL------SQHT 1088 (1232)
Q Consensus 1019 VGrtGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~-LF~gTIr~NLdp~------~~~s 1088 (1232)
+||||||||||+++|+|+.+ |++|+|.+||+++. .++|++++||||++. ++..||||||+.. .+.+
T Consensus 795 ~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~ 870 (1394)
T TIGR00956 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS 870 (1394)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999998 78899999999985 357899999999876 5577999999731 1233
Q ss_pred H----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC-EEEEeccCCCCCHHHHHHHHH
Q 000904 1089 D----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR-ILVLDEATASIDNATDMILQK 1163 (1232)
Q Consensus 1089 d----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k-ILILDEaTs~LD~~T~~~Iq~ 1163 (1232)
+ +++.++++..++.+ ..|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||..+...|++
T Consensus 871 ~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~ 943 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICK 943 (1394)
T ss_pred HHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHH
Confidence 3 34677888887753 36888888888999999999999999999997 999999999999999999999
Q ss_pred HHHHh-cCCcEEEEEecChhhh--hhcCeEEEEeCC-EEEEecChhH
Q 000904 1164 TIRAE-FADCTVITVAHRIPTV--MDCTMVLAISDG-KLAEYDEPMK 1206 (1232)
Q Consensus 1164 ~L~~~-~~~~TVI~IAHrl~ti--~~~DrVlVL~~G-~vvE~g~p~~ 1206 (1232)
.|++. .+++|||+++|+++.. ..+|+|++|++| +++++|++.+
T Consensus 944 ~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 944 LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99985 4589999999999974 459999999997 9999999743
No 94
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-42 Score=386.01 Aligned_cols=216 Identities=27% Similarity=0.465 Sum_probs=194.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++.+|+... +++|+|++|+.||.++++||||||||||+++|+||.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997432 999999999999999999999999999999999999999999999999999998876 7899
Q ss_pred EEccCCCCCcc-cHHhccCC-CC------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDP-LS------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp-~~------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+|+|++.||.. ||++|+.. .. +.-++++.++++..++.+..+++|. +||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999976 99999973 11 1236678899999999888888764 699999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++++||||.|+||......+...|++.. -+.|+|.||||....+. +|||.||++|+|.+.|+|.++.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 999999999999999999999988888777633 26899999999988877 999999999999999999999999887
Q ss_pred HH
Q 000904 1214 LF 1215 (1232)
Q Consensus 1214 ~f 1215 (1232)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 76
No 95
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-42 Score=358.22 Aligned_cols=212 Identities=25% Similarity=0.410 Sum_probs=189.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---hHhhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~ 1061 (1232)
.|+++||+.+|+ +...+|+||||+|++||.|+|+|+||||||||+++|.|+.+|++|+|.++|.++..+. ++++|+
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 489999999996 5567999999999999999999999999999999999999999999999999999887 778899
Q ss_pred cEEEEccCCCCCc-ccHHhccCC------------CCCCC---HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCCh
Q 000904 1062 RFGIIPQDPTLFN-GTVRYNLDP------------LSQHT---DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~-gTIr~NLdp------------~~~~s---d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
++|+|+|+|.|.. -|+-+|+.. |+-++ ..+..++|+++|+.+..... .++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----------a~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----------ASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----------hccCCc
Confidence 9999999998874 588888731 23333 34577899999998876654 348999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1126 GQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||+||++|||||.++|+|++-|||||+||+.+.+.+++.|++. ..|.|||+.-|+++..++ ||||+-|++|+|+-+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 9999999999999999999999999999999999999999874 347899999999999998 8999999999999999
Q ss_pred ChhHHH
Q 000904 1203 EPMKLM 1208 (1232)
Q Consensus 1203 ~p~~Ll 1208 (1232)
++.+|-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999963
No 96
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-41 Score=361.57 Aligned_cols=205 Identities=29% Similarity=0.438 Sum_probs=175.7
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hh-
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DL- 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~L- 1059 (1232)
++++|++..|..+. ..+|+|+||+|++||.++|+||||||||||+++|.++..|++|+|.++|.|+..++-+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 3699999999999999999999999999999999999999999999999999999843 34
Q ss_pred hccEEEEccCCCCCc-ccHHhccC-C--CCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1060 RSRFGIIPQDPTLFN-GTVRYNLD-P--LSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~-gTIr~NLd-p--~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
|++||+|+|+..|++ -|++||+. | +... .++.+.+.++.+|+.+..... .+.+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~----------~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK----------KPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccC----------CchhcCHHHHHHH
Confidence 467999999999875 59999986 2 2222 244567777777887655522 2458999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEE
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAE 1200 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE 1200 (1232)
||||||+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+||||......|||++.|.||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999998863 3789999999999999999999999999543
No 97
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=377.81 Aligned_cols=219 Identities=22% Similarity=0.389 Sum_probs=192.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCChHhhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE---PAGGKILVDGIDISKLGLHDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR~ 1061 (1232)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+.+....|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999963 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred cEEEEccCCCCCcccHHhccCCCC---C------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1062 RFGIIPQDPTLFNGTVRYNLDPLS---Q------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~gTIr~NLdp~~---~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+.+... ....+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999996421 1 1234577889999987655432 23356789999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
|||||+++|++|+|||||++||..+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|++++++..+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999986668999999999998876 9999999999999999999998754
Q ss_pred C
Q 000904 1212 G 1212 (1232)
Q Consensus 1212 ~ 1212 (1232)
.
T Consensus 233 ~ 233 (246)
T PRK14269 233 K 233 (246)
T ss_pred C
Confidence 3
No 98
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=384.62 Aligned_cols=215 Identities=26% Similarity=0.429 Sum_probs=190.0
Q ss_pred eEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 985 KVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
.++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCC--CCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPT--LFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~--LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|. ++..||++|+.... ..+ ++++.++++.+++.+..... +.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999983 66789999996321 122 34578899999887665443 358999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||+++|++|||||||++||..+.+.+.+.|++.. .++|||+||||++.+..||+|++|++|++++.|+|++++.+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999998753 27899999999999977999999999999999999998765
No 99
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-41 Score=392.94 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=190.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ...+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 3889999999942 24699999999999999999999999999999999999999999999999999887754 47899
Q ss_pred EEccCCCCCc-ccHHhccCCC-C--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPL-S--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
||||+|.+|. .||++|+... . ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 5999999632 1 122 345778899999877665554 4799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987543 7899999999998876 999999999999999999999988765
Q ss_pred HH
Q 000904 1214 LF 1215 (1232)
Q Consensus 1214 ~f 1215 (1232)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 55
No 100
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=393.63 Aligned_cols=220 Identities=25% Similarity=0.402 Sum_probs=189.9
Q ss_pred EEEEeeEeEecC--CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---hh
Q 000904 986 VDICDLQIRYRP--DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~--~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1060 (1232)
|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 689999999962 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred ccEEEEccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++++|+||+|.+|. .|+++|+... ...+ ++++.++++.+++.+..... +.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999886 6999998632 1122 24567788888876554333 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|+||+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999987532 7899999999999987 99999999999999999999987
Q ss_pred hcCCHHH
Q 000904 1210 REGSLFG 1216 (1232)
Q Consensus 1210 ~~~~~f~ 1216 (1232)
++...+.
T Consensus 231 ~~~~~~~ 237 (343)
T PRK11153 231 HPKHPLT 237 (343)
T ss_pred CCCcHHH
Confidence 6544443
No 101
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.8e-41 Score=371.81 Aligned_cols=210 Identities=25% Similarity=0.374 Sum_probs=183.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+.+.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... .++|++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 4789999999643256999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred EccCCCCC-cccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+| ..|+++|+.... ..+ +++++++++.+++.+..... ..+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKR-----------ARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh-----------hhhCCHHHHHHHHHHHHH
Confidence 99999988 679999985321 112 24577888888886544332 357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
+++|++|+|||||++||+.+.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987667999999999999977 999999999999999998875
No 102
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=384.80 Aligned_cols=216 Identities=26% Similarity=0.441 Sum_probs=185.7
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC--hHhhh
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG--LHDLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~LR 1060 (1232)
|+++|++++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996422 36999999999999999999999999999999999999999999999999998754 45788
Q ss_pred ccEEEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1061 SRFGIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1061 ~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++++|+||+| .+|..|+++|+.... ..++ +++.++++.+++.. +......+.+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 9999999998 578899999996321 1232 34678888888751 0112234568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+||||++.+.. ||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999987542 7899999999999865 9999999999999999999987
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
++
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 64
No 103
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.2e-41 Score=371.33 Aligned_cols=216 Identities=31% Similarity=0.496 Sum_probs=195.3
Q ss_pred cceEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhc
Q 000904 983 VGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRS 1061 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~ 1061 (1232)
.|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+....|+
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4679999999999642 246999999999999999999999999999999999999999999999999998887778889
Q ss_pred cEEEEccCCCCCcccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1062 RFGIIPQDPTLFNGTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
+++|+||+|.+|++|+++|++.. .....+++++..+..++.+.+..++.|+++.+...+.+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999742 23344566666777788888888888899888888999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
|++|||||||++||.++.+.+.+.|++..++.|+|+|||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999986667899999999999988999999999975
No 104
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.8e-41 Score=370.65 Aligned_cols=202 Identities=23% Similarity=0.351 Sum_probs=175.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1062 (1232)
++++|++++|+.+.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999964334699999999999999999999999999999999999999999999999999876543 46889
Q ss_pred EEEEccCCCCCc-ccHHhccCCC----CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPL----SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~----~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+|. .|+++|+... +. ..++++.++++.+++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 5999998631 11 12456888999998876554433 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
|||+++|++|+|||||++||.++.+.+.+.|++.. .++|||+||||++.+.+ ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 37899999999999986 899999999985
No 105
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-41 Score=375.74 Aligned_cols=222 Identities=25% Similarity=0.394 Sum_probs=191.8
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CC
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LG 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~ 1055 (1232)
.+.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 467999999999963 369999999999999999999999999999999999997 589999999999863 45
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
...+|++++|+||+|.+|..|+++|+... ...+ +++++++++.+++.+.+.. .......+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 66789999999999999999999999632 1122 3567888998888543322 2234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|||++|||||+++|+||||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987567899999999999876 99999999999999999999
Q ss_pred HHhhcCC
Q 000904 1207 LMKREGS 1213 (1232)
Q Consensus 1207 Ll~~~~~ 1213 (1232)
+++++..
T Consensus 242 ~~~~~~~ 248 (260)
T PRK10744 242 IFTKPAK 248 (260)
T ss_pred HHhCCCc
Confidence 9876443
No 106
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-41 Score=390.47 Aligned_cols=217 Identities=23% Similarity=0.372 Sum_probs=191.1
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..|+++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.+ ++++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999953 4699999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEccCCCCCcc-cHHhccCCC-C--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPL-S--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+||||++.+|.. |+++|+... . ..+ ++++.++++.+++.+...+. +.+||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999965 999999731 1 122 45678889998887654443 3579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
||+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|+||++|++++.|+|+++++++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999987543 7899999999999877 99999999999999999999998877
Q ss_pred CHH
Q 000904 1213 SLF 1215 (1232)
Q Consensus 1213 ~~f 1215 (1232)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 655
No 107
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=381.01 Aligned_cols=211 Identities=24% Similarity=0.373 Sum_probs=186.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.+++|++++
T Consensus 4 ~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 4899999999963 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+| .++..|+++|+.... ..+ ++++.++++.+++.+...+.| .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999 688899999996321 112 346788899998876654443 479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||+++|++|+|||||++||+.+...+.+.|++.. .++|||+||||++.+.+ ||||++|++|++++.|+|+++
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999998753 37899999999999966 999999999999999998754
No 108
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-41 Score=375.02 Aligned_cols=212 Identities=27% Similarity=0.442 Sum_probs=183.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---hHhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~LR~~ 1062 (1232)
++++|++++|+.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999632 46999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred EEEEccCCCCCc-ccHHhccCCC------------C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPL------------S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~------------~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
++|+||++.+|. .|+++|+... + ...++++.++++.+++.+.. ...+.+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCHH
Confidence 999999998886 6999998521 1 11234567778887775432 2345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||+||||++.+.+ ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999998753 37899999999999985 99999999999999999
Q ss_pred hhHHHh
Q 000904 1204 PMKLMK 1209 (1232)
Q Consensus 1204 p~~Ll~ 1209 (1232)
++++.+
T Consensus 229 ~~~~~~ 234 (241)
T cd03256 229 PAELTD 234 (241)
T ss_pred HHHhhH
Confidence 998743
No 109
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-41 Score=383.09 Aligned_cols=215 Identities=25% Similarity=0.372 Sum_probs=184.9
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC----CChHh
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK----LGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i~l~~ 1058 (1232)
|+++|++++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhccEEEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|++++|++|+| .+|..|+.+|+.... ..+ ++++.++++.+++.+... ...+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCHHHHH
Confidence 899999999998 789999999996211 122 234677888888753211 2334689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|++|||||+.+|+||||||||++||+.+...+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++++.|+|+++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998743 47899999999999866 999999999999999999999
Q ss_pred Hhh
Q 000904 1208 MKR 1210 (1232)
Q Consensus 1208 l~~ 1210 (1232)
+.+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 764
No 110
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-41 Score=371.96 Aligned_cols=212 Identities=24% Similarity=0.371 Sum_probs=183.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876543 3678999
Q ss_pred EccCCCCCc-ccHHhccCCCCC---C----C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLSQ---H----T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~~---~----s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
+||+|.+|. .|+++|+..... . . ++++.++++.+++.+..... ..+||+|||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHH
Confidence 999999885 599999963211 1 1 23466778888876544332 35799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||+++|++|+|||||++||+++.+.+.+.|++..+ ++|||+||||++.+.. ||+|++|++|++++.|++++++++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999987532 6899999999998876 999999999999999999999865
Q ss_pred cC
Q 000904 1211 EG 1212 (1232)
Q Consensus 1211 ~~ 1212 (1232)
+.
T Consensus 228 ~~ 229 (239)
T cd03296 228 PA 229 (239)
T ss_pred CC
Confidence 43
No 111
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-41 Score=374.56 Aligned_cols=219 Identities=26% Similarity=0.387 Sum_probs=189.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 4999999999963 469999999999999999999999999999999999975 589999999999975 3456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... +. ..++++.++++.+++.+.+.. .....+.+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 778899999999999999999999631 11 124567888888888654432 123446789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|+||+|||||++||..+.+.+.+.|++..+++|||++|||++.+.+ ||+|++|++|++++.|++++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999986557899999999999976 9999999999999999999998
Q ss_pred hhcC
Q 000904 1209 KREG 1212 (1232)
Q Consensus 1209 ~~~~ 1212 (1232)
+++.
T Consensus 237 ~~~~ 240 (253)
T PRK14242 237 TRPR 240 (253)
T ss_pred cCCC
Confidence 7654
No 112
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-41 Score=380.22 Aligned_cols=215 Identities=25% Similarity=0.386 Sum_probs=190.8
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..+++++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999644456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+| .++..|+++|+.... ..+ ++++.++++.++|.+.....| .+||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999999 467889999996321 122 245778888888877665544 479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999987543 7899999999999988999999999999999999998764
No 113
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-41 Score=381.72 Aligned_cols=216 Identities=25% Similarity=0.394 Sum_probs=184.2
Q ss_pred eEEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChH
Q 000904 985 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~ 1057 (1232)
.++++|++++|+++. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 3699999999999999999999999999999999999999999999999999754 356
Q ss_pred hhhccEEEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|++|+|+||+| .+|..|+++|+.... ..+ ++++.++++.+++... .....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 7899999999998 588899999996321 123 2345566666666421 12234568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPM 1205 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~ 1205 (1232)
||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.+ ||||++|++|++++.|+|+
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998753 47899999999999875 8999999999999999999
Q ss_pred HHHhh
Q 000904 1206 KLMKR 1210 (1232)
Q Consensus 1206 ~Ll~~ 1210 (1232)
+++++
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98764
No 114
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=8.5e-41 Score=372.87 Aligned_cols=221 Identities=26% Similarity=0.402 Sum_probs=190.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCCC--ChHh
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDISKL--GLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~i--~l~~ 1058 (1232)
++++|++++|+. ..+++|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 689999999963 35999999999999999999999999999999999999998 99999999999763 4556
Q ss_pred hhccEEEEccCCCCCcccHHhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
.|++++|+||+|.+|..|+++|+... .. .+ ++++.++++.+++.+.+.. .....+.+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHHH
Confidence 78899999999999999999998631 11 11 3457788888888743321 1223456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999986556899999999999876 99999999999999999999987
Q ss_pred hcCCHH
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~~~f 1215 (1232)
++...+
T Consensus 233 ~~~~~~ 238 (247)
T TIGR00972 233 NPKEKR 238 (247)
T ss_pred CCCChH
Confidence 655443
No 115
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-41 Score=374.20 Aligned_cols=222 Identities=21% Similarity=0.325 Sum_probs=190.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5999999999963 4699999999999999999999999999999999999997 48999999999864 3455
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... +.. .++++.++++.+++.+.+. ..+++ .+.+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC----CcccCCHHHHH
Confidence 678899999999999999999999632 111 2355778888888754332 22333 45789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|+|+|||+++.+.+ ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
+++.-.|
T Consensus 238 ~~~~~~~ 244 (254)
T PRK14273 238 FNPKNTK 244 (254)
T ss_pred hCCCChH
Confidence 7654443
No 116
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.3e-41 Score=372.82 Aligned_cols=212 Identities=27% Similarity=0.409 Sum_probs=182.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+. |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999963 469999999999999999999999999999999999999999999999999988876654 57799
Q ss_pred EEccCCCCCcc-cHHhccCCCC----CC-------------CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLS----QH-------------TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~----~~-------------sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
|+||+|.+|.+ |+++|+.... .. .++++.++++..++.+. ......+||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-----------ADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-----------hhCChhhCCHH
Confidence 99999999886 9999985321 10 12245566666665433 23345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
||||++|||||+++|++|+|||||++||..+.+.+.+.|++.. .++|+|+||||++.+.+ ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998754 57899999999999977 999999999999999999
Q ss_pred hHHHhh
Q 000904 1205 MKLMKR 1210 (1232)
Q Consensus 1205 ~~Ll~~ 1210 (1232)
++++++
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998764
No 117
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-41 Score=373.12 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=187.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999742 469999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EccCCCCCc-ccHHhccCCCC---CCC----HHHHHHHHHHcCCcH--HHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS---QHT----DQEIWEVLAKCHLGE--AVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~--~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+ .. ...+.+||||||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-----------DRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-----------hcChhhCCHHHHHHHHHHH
Confidence 999999885 69999986321 112 345778888887764 22 2334689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
|++++|++|+|||||++||.++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|+++++.+++.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 228 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCC
Confidence 9999999999999999999999999999998753 27899999999998876 99999999999999999999976544
No 118
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.1e-41 Score=373.29 Aligned_cols=211 Identities=27% Similarity=0.406 Sum_probs=182.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1062 (1232)
++++|++++|+. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 678999999962 3469999999999999999999999999999999999999999999999999987654 446889
Q ss_pred EEEEccCCCCCc-ccHHhccCCC------------CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPL------------SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~------------~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
++|+||+|.+|. .|+++|+... +. ..++++.++++.+++.+... ..+.+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999998886 6999999521 00 12345777888887755432 234689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++|||||+++|++|+|||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998753 37899999999999976 99999999999999999
Q ss_pred hhHHH
Q 000904 1204 PMKLM 1208 (1232)
Q Consensus 1204 p~~Ll 1208 (1232)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99874
No 119
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.3e-40 Score=384.06 Aligned_cols=223 Identities=20% Similarity=0.314 Sum_probs=189.6
Q ss_pred eEEEEeeEeEecCC-----------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC
Q 000904 985 KVDICDLQIRYRPD-----------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK 1053 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~-----------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~ 1053 (1232)
-++++|++++|... ...+++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999531 2468999999999999999999999999999999999999999999999999998
Q ss_pred CChH---hhhccEEEEccCC--CCC-cccHHhccCC----CC-CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccC
Q 000904 1054 LGLH---DLRSRFGIIPQDP--TLF-NGTVRYNLDP----LS-QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118 (1232)
Q Consensus 1054 i~l~---~LR~~i~iVpQdP--~LF-~gTIr~NLdp----~~-~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e 1118 (1232)
++.+ .+|++++||+||| .++ ..||.+|+.. +. ..+ ++.+.++|+.+++.+... ..
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~----------~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI----------NR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh----------cC
Confidence 8754 4678999999999 466 5799999741 11 123 234567788888843221 22
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeC
Q 000904 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISD 1195 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~ 1195 (1232)
.+.+||||||||++|||||+.+|++||+||||++||..+...+.+.|++.. .+.|+|+||||++.+.+ ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 356899999999999999999999999999999999999999999998753 37899999999999987 999999999
Q ss_pred CEEEEecChhHHHhhcCCHHHH
Q 000904 1196 GKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1196 G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|+++|.|+++++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999876656654
No 120
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.9e-41 Score=389.20 Aligned_cols=217 Identities=26% Similarity=0.363 Sum_probs=190.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999963 4689999999999999999999999999999999999999999999999999877654 67899
Q ss_pred EEccCCCCCc-ccHHhccCCC-C--CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPL-S--QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~-~--~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.+|. .|+++|+... . .. .++++.++++.++|.+...+. +.+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999996 6999999631 1 11 235677888888887655443 45799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987543 7899999999999876 999999999999999999999998876
Q ss_pred HHH
Q 000904 1214 LFG 1216 (1232)
Q Consensus 1214 ~f~ 1216 (1232)
.|-
T Consensus 229 ~~~ 231 (353)
T TIGR03265 229 PFV 231 (353)
T ss_pred HHH
Confidence 663
No 121
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-41 Score=370.49 Aligned_cols=214 Identities=27% Similarity=0.412 Sum_probs=185.4
Q ss_pred EEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhh
Q 000904 986 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR 1060 (1232)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999642 12699999999999999999999999999999999999999999999999999877644 347
Q ss_pred ccEEEEccCCCCCc-ccHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPTLFN-GTVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~-gTIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++++|+||+|.+|. .|+++|+... ... .++++.++++..++.+..... ..+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 88999999999986 6999998531 111 234678888888886554433 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
||||++++|++|||||||++||..+...+.+.|++.. .++|||+|||+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998753 27899999999999877 89999999999999999999876
Q ss_pred h
Q 000904 1210 R 1210 (1232)
Q Consensus 1210 ~ 1210 (1232)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
No 122
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.8e-41 Score=389.66 Aligned_cols=205 Identities=24% Similarity=0.350 Sum_probs=181.4
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh----hccEEEEccCCCCCc-
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL----RSRFGIIPQDPTLFN- 1074 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~i~iVpQdP~LF~- 1074 (1232)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+...+..++ |++++||||++.+|.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999988877 789999999999997
Q ss_pred ccHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1075 GTVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1075 gTIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
.||++|+... ... .++++.++|+.++|.++..+. +.+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999631 111 235678889888887655444 4579999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1148 EATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
|||++||+.+.+.+++.+++.. .++|+|+||||++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999999999998643 37899999999998766 99999999999999999999998765444
No 123
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=374.17 Aligned_cols=221 Identities=22% Similarity=0.414 Sum_probs=190.0
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CC
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LG 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~ 1055 (1232)
...++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 346999999999963 469999999999999999999999999999999999988 689999999999863 46
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCCC---CC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
..++|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+. ........+||+||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 677889999999999999899999997422 11 2355677888887754322 2233455789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeC-----------CE
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISD-----------GK 1197 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~-----------G~ 1197 (1232)
|++|||||+++|++|+|||||++||..+.+.+.+.|++..++.|||+|||+++.+.+ ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999987667899999999999877 999999996 67
Q ss_pred EEEecChhHHHhhcC
Q 000904 1198 LAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~ 1212 (1232)
++|.|+|+++++++.
T Consensus 242 ~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 242 LVEFNETKKIFNSPK 256 (269)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999999987654
No 124
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=373.18 Aligned_cols=219 Identities=26% Similarity=0.366 Sum_probs=188.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCC--CCChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDIS--KLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~--~i~l~ 1057 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4889999999963 46999999999999999999999999999999999999874 999999999997 45566
Q ss_pred hhhccEEEEccCCCCCcc-cHHhccCCC---CC--CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1058 DLRSRFGIIPQDPTLFNG-TVRYNLDPL---SQ--HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~g-TIr~NLdp~---~~--~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
++|++++|+||+|.+|.+ |+++|+... .. .. ++++.++++..++.+.+.. .....+.+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 788899999999999975 999999631 11 11 2456788888887543322 1233557899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|||++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999986567899999999999876 99999999999999999999
Q ss_pred HHhhcC
Q 000904 1207 LMKREG 1212 (1232)
Q Consensus 1207 Ll~~~~ 1212 (1232)
+++++.
T Consensus 235 ~~~~~~ 240 (253)
T PRK14267 235 VFENPE 240 (253)
T ss_pred HHhCCC
Confidence 987643
No 125
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=373.91 Aligned_cols=222 Identities=24% Similarity=0.361 Sum_probs=191.2
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CC
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LG 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~ 1055 (1232)
.+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 89999999999975 34
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCC---CCC------CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPL---SQH------TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~~------sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
...+|++++|+||+|.+|.+|+++|+... ... .++++.++++.+++.+.+.. .....+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHH
Confidence 56788999999999999989999999631 111 13457888998888654432 123345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPM 1205 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~ 1205 (1232)
||||++|||||+.+|++|||||||++||..+...+.+.|++..++.|||+|||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999986567899999999999976 8999999999999999999
Q ss_pred HHHhhcCC
Q 000904 1206 KLMKREGS 1213 (1232)
Q Consensus 1206 ~Ll~~~~~ 1213 (1232)
+++.++..
T Consensus 248 ~~~~~~~~ 255 (267)
T PRK14235 248 KMFTNPDD 255 (267)
T ss_pred HHHhCCCC
Confidence 99865443
No 126
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=386.54 Aligned_cols=216 Identities=25% Similarity=0.388 Sum_probs=189.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3789999999963 469999999999999999999999999999999999999999999999999987653 467899
Q ss_pred EEccCCCCCc-ccHHhccCCC-C------CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPL-S------QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~-~------~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
|+||++.+|. .|+++|+... . ..+ ++++.++|+.+++.+...+. +.+||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 9999999997 4999999632 1 112 34677889988887655443 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|++|+|||||++||..+.+.+.+.|++..+ ++|+|+||||++.+.. ||+|++|++|++++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999987543 6899999999999877 99999999999999999999998
Q ss_pred hcCCHH
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~~~f 1215 (1232)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 776544
No 127
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=380.04 Aligned_cols=215 Identities=23% Similarity=0.341 Sum_probs=184.6
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC----CChHh
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK----LGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i~l~~ 1058 (1232)
++++|++++|++.. .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 469999999999999999999999999999999999999999999999999863 34667
Q ss_pred hhccEEEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.|++++|+||+| .+|..|+++|+.... ..+. +.+.++++.++|.+... ...+.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 888999999998 688889999995211 1222 34667888888763322 2234689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|++|||||+.+|++|||||||++||+.+...+.+.|++.. .+.|||+||||++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998753 37899999999999876 99999999999999999999
Q ss_pred HHhh
Q 000904 1207 LMKR 1210 (1232)
Q Consensus 1207 Ll~~ 1210 (1232)
++++
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8764
No 128
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=382.17 Aligned_cols=224 Identities=25% Similarity=0.356 Sum_probs=189.1
Q ss_pred eEEEEeeEeEecCC--------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh
Q 000904 985 KVDICDLQIRYRPD--------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL 1056 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l 1056 (1232)
.|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999621 2469999999999999999999999999999999999999999999999999988864
Q ss_pred H---hhhccEEEEccCCC--CCc-ccHHhccC-CC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1057 H---DLRSRFGIIPQDPT--LFN-GTVRYNLD-PL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1057 ~---~LR~~i~iVpQdP~--LF~-gTIr~NLd-p~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
+ .+|++++||||||. ++. -|+.+|+. +. ... ..+++.++|+++++.+.. ++. .+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH------YDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH------hcC----CCcc
Confidence 3 56789999999994 544 38887774 11 111 234578889999886422 222 3468
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
||||||||++|||||+.+|++||+||||++||..+...|.+.|++.. .+.|+|+||||++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998753 37899999999999986 9999999999999
Q ss_pred EecChhHHHhhcCCHHHHH
Q 000904 1200 EYDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~~~f~~l 1218 (1232)
|.|+++++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999998776656543
No 129
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=371.06 Aligned_cols=222 Identities=26% Similarity=0.398 Sum_probs=191.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCChHhh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~l~~L 1059 (1232)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4889999999963 4699999999999999999999999999999999999984 69999999999998888888
Q ss_pred hccEEEEccCCCCC-cccHHhccCCCC---C--C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1060 RSRFGIIPQDPTLF-NGTVRYNLDPLS---Q--H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF-~gTIr~NLdp~~---~--~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
|++++|+||+|.+| ..|+++|+.... . . .++++.++++.+++.+.+.. .++ ..+.+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLD----APAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhc----CCcccCCHHHHH
Confidence 99999999999755 679999995311 1 1 13567888999988654321 122 335689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|+||+|||||++||..+.+.+.+.|++..+++|+|+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999986667999999999999875 9999999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
+++...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14247 234 TNPRHEL 240 (250)
T ss_pred cCCccHH
Confidence 7654434
No 130
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-41 Score=365.31 Aligned_cols=202 Identities=27% Similarity=0.378 Sum_probs=174.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 468999999953 46999999999999999999999999999999999999999999999999997654 34678999
Q ss_pred EccCCCCCc-ccHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|. .|+++|+.... .. .++++.++++.+++.+..... ..+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHH
Confidence 999998885 69999986311 11 134577888888887654443 357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|||||||++||.++...+.+.|++.. .++|||+||||++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998753 37899999999999877 9999999999998865
No 131
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=378.62 Aligned_cols=214 Identities=26% Similarity=0.432 Sum_probs=186.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC--CCChHhhhcc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS--KLGLHDLRSR 1062 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~ 1062 (1232)
.|+++|++++|++ .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4899999999963 346999999999999999999999999999999999999999999999999984 3456678999
Q ss_pred EEEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1063 FGIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1063 i~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
++|+||+| .+|+.|+++|+.... ..+ ++++.++++.+++.+... ..+.+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999999 578999999996311 122 244677788888865432 2356899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||+.+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.+ ||||++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999987543 7899999999999975 999999999999999999998764
No 132
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=380.58 Aligned_cols=215 Identities=22% Similarity=0.291 Sum_probs=184.0
Q ss_pred eEEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC--------
Q 000904 985 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK-------- 1053 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-------- 1053 (1232)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999996432 259999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CChHhhhccEEEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCc-HHHHh
Q 000904 1054 ----------------LGLHDLRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLG-EAVRE 1107 (1232)
Q Consensus 1054 ----------------i~l~~LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~-~~i~~ 1107 (1232)
.+..++|++++|+||+| .+|..||++|+.... ..+ ++++.++++.++|. +...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467789999999987 688899999996321 122 34567888888885 3332
Q ss_pred hccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh
Q 000904 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1108 ~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~ 1186 (1232)
..+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+||||++.+.+
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 2346899999999999999999999999999999999999999999998753 47899999999998866
Q ss_pred -cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1187 -CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1187 -~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||||++|++|++++.|+|++++++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999865
No 133
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-40 Score=359.81 Aligned_cols=199 Identities=25% Similarity=0.400 Sum_probs=181.5
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhcc
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~ 1062 (1232)
++++||+++|++.. +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997542 3699999999999999999999999999999999999999999999998 6
Q ss_pred EEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1063 FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1063 i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
++|+||+|.+|++|+++|+......++++.+++++.+++.+.+...|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998654556677889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHH-HHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1143 ILVLDEATASIDNATDMILQK-TIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~-~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
+++|||||++||.++.+.+.+ .+++.. ++.|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999777766 566543 3689999999999999999999999985
No 134
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-41 Score=380.21 Aligned_cols=217 Identities=24% Similarity=0.381 Sum_probs=194.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..|+++||+.+|+ ...+++|+|++|++||.+.+.|||||||||++++|+|+..|++|+|.+||.||..++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 3599999999997 45799999999999999999999999999999999999999999999999999998887 5789
Q ss_pred EEEccCCCCCcc-cHHhccCCC-C---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPL-S---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~-~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+|+..||.. ||++|+... . ...+ +++.++|+.++|.++-.+.| ++|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 999999999965 999998631 1 1232 36889999999999877766 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
|||..+|++|+||||-|+||..-...+|.-|++.. .+.|.|+||||-+.... +|||.||++|+|...|+|+|+..+|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999988877632 37899999999887766 9999999999999999999999998
Q ss_pred CCHH
Q 000904 1212 GSLF 1215 (1232)
Q Consensus 1212 ~~~f 1215 (1232)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 8777
No 135
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=367.90 Aligned_cols=208 Identities=27% Similarity=0.376 Sum_probs=179.8
Q ss_pred eEEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---h
Q 000904 985 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---L 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---L 1059 (1232)
.++++|++++|+.+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+|+.+++.++ +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-ccEEEEccCCCCCcc-cHHhccCC---CCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 R-SRFGIIPQDPTLFNG-TVRYNLDP---LSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 R-~~i~iVpQdP~LF~g-TIr~NLdp---~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
| ++++|+||+|.+|.+ |+++|+.. +... .++++.++++.+++.+...+ .+.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 679999999998865 99999853 1111 23457788888877654333 345799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~ 1203 (1232)
++||||++++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998753 4789999999999999999999999999998765
No 136
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.7e-41 Score=413.69 Aligned_cols=191 Identities=23% Similarity=0.301 Sum_probs=163.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|.. ..|+++|++|++||.+||+|+||||||||+++|+|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999953 35999999999999999999999999999999999999999999986 1699
Q ss_pred EEccCCCC-CcccHHhccCCCC-CC-CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1065 IIPQDPTL-FNGTVRYNLDPLS-QH-TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1065 iVpQdP~L-F~gTIr~NLdp~~-~~-sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
|+||++.+ ++.|+++|+.... .+ .+..+.++|+..++.+.... ...+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----------~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDK-----------NVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhC-----------CcccCCHHHHHHHHHHHHHhcCC
Confidence 99999874 5679999986321 12 23456788888888654333 23579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
+||||||||++||.++...+.+.|++.. .++|+|+||||++.+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999753 37899999999999887 999999964 7776665
No 137
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-40 Score=365.43 Aligned_cols=212 Identities=25% Similarity=0.395 Sum_probs=179.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 478999999963 369999999999999999999999999999999999999999999999999988876654 67799
Q ss_pred EEccCCCCCcc-cHHhccCCCCC-C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ-H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~-~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
|+||+|.+|.+ |+++|+..... . ..+++.++++..+ +++......+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999886 99999964221 1 1223344444431 1222233445689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|++|+|||||++||.++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998754 47899999999999877 99999999999999999988764
No 138
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-40 Score=352.53 Aligned_cols=219 Identities=26% Similarity=0.364 Sum_probs=184.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.+++++++.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4889999999974 5799999999999999999999999999999999999999999999999888443 45899
Q ss_pred EEccCCCCCc-ccHHhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
||+|++.||. -||++|+...-+ ...+.+.++|+++||.++-...|. +||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 9999999995 599999863211 134568899999999998877664 799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeC--CEE---EEec--ChhH
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISD--GKL---AEYD--EPMK 1206 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~--G~v---vE~g--~p~~ 1206 (1232)
|+.+|+||+||||.++||..|...+|+.|.+.. .++||++||||++.... +|||+||.+ |+| ++.+ .|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR- 223 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPR- 223 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCc-
Confidence 999999999999999999999999999887643 36899999999987766 999999999 544 3333 344
Q ss_pred HHhhcCCHHHHHHHHHHh
Q 000904 1207 LMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1207 Ll~~~~~~f~~l~~~~~~ 1224 (1232)
...+..|..+.++-..
T Consensus 224 --~~~~~~f~~l~~~i~~ 239 (248)
T COG1116 224 --IRGDPEFLELREELLE 239 (248)
T ss_pred --cccChHHHHHHHHHHH
Confidence 2335667777766554
No 139
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.4e-40 Score=386.92 Aligned_cols=218 Identities=26% Similarity=0.422 Sum_probs=190.9
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc--cEEEECCeeCCCCChHhhh
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG--GKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~--G~I~IDG~dI~~i~l~~LR 1060 (1232)
.|.++++|++++|+. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++ |+|.+||.++...+.+ +
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 367999999999963 469999999999999999999999999999999999999999 9999999999876653 5
Q ss_pred ccEEEEccCCCCCcc-cHHhccCC-CC--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPTLFNG-TVRYNLDP-LS--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~g-TIr~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++++|++|++.+|.. |+++|+.. .. ..+ ++++.++++.++|.+...+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999966 99999962 11 122 245777888888876655544 479999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA---DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~---~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|||||+++|++|+|||||++||..+...+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|++++
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999887433 6899999999999876 9999999999999999999999
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
+++...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8876555
No 140
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.4e-40 Score=371.37 Aligned_cols=218 Identities=28% Similarity=0.382 Sum_probs=187.8
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC--------
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL-------- 1054 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i-------- 1054 (1232)
.+.++++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 356999999999963 4699999999999999999999999999999999999999999999999998642
Q ss_pred -----ChHhhhccEEEEccCCCCCcc-cHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1055 -----GLHDLRSRFGIIPQDPTLFNG-TVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1055 -----~l~~LR~~i~iVpQdP~LF~g-TIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
....+|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+.... ..+
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQG----------KYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhh----------CCc
Confidence 135678899999999999974 999998621 111 23457788888888665321 234
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
.+||||||||++|||||+++|++|||||||++||.++.+.+.+.|++.. .++|+|+||||++.+.+ ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999998753 47999999999999987 899999999999
Q ss_pred EEecChhHHHhhcC
Q 000904 1199 AEYDEPMKLMKREG 1212 (1232)
Q Consensus 1199 vE~g~p~~Ll~~~~ 1212 (1232)
++.|+++++++.+.
T Consensus 231 ~~~~~~~~~~~~~~ 244 (257)
T PRK10619 231 EEEGAPEQLFGNPQ 244 (257)
T ss_pred EEeCCHHHhhhCcc
Confidence 99999999986543
No 141
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.7e-40 Score=389.58 Aligned_cols=213 Identities=26% Similarity=0.441 Sum_probs=190.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4889999999963 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCC-CcccHHhccCCC--------C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1065 IIPQDPTL-FNGTVRYNLDPL--------S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1065 iVpQdP~L-F~gTIr~NLdp~--------~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
++||+|.+ |..|+++|+... . ..++++++++++.+++.+...+. ..+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999986 688999998531 1 11245688999999997655332 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||||+++|+||+|||||++||..+...+.+.|++.. .+.|||+++|+++.+.. |||+++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999998754 47899999999999966 999999999999999999999864
No 142
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-40 Score=363.81 Aligned_cols=208 Identities=27% Similarity=0.391 Sum_probs=180.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ..++|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred EccCCCCCcc-cHHhccCCC----CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL----SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~----~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.++.+ |+++|+... +. ..++++.++++.+++.+..... ..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999998875 999998531 11 1234678889999887654433 247999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
+.+|++|+|||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987532 6899999999999887 999999999999999988764
No 143
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-40 Score=375.69 Aligned_cols=217 Identities=24% Similarity=0.335 Sum_probs=186.1
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh----hcc
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL----RSR 1062 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~ 1062 (1232)
.++|++.+|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 45688888853 469999999999999999999999999999999999999999999999999988765543 468
Q ss_pred EEEEccCCCCC-cccHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLF-NGTVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF-~gTIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+| ..|+++|+... ... .++++.++++.+++.+.....| .+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999999988 46999998631 111 2345778888888876655443 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
|||+++|+||||||||++||..+.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|+++++++++
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998753 37899999999999876 9999999999999999999998766
Q ss_pred CCHHH
Q 000904 1212 GSLFG 1216 (1232)
Q Consensus 1212 ~~~f~ 1216 (1232)
...|.
T Consensus 253 ~~~~~ 257 (269)
T cd03294 253 ANDYV 257 (269)
T ss_pred CcHHH
Confidence 55443
No 144
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-40 Score=373.49 Aligned_cols=215 Identities=26% Similarity=0.420 Sum_probs=187.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+.+.+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+..++|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999644457999999999999999999999999999999999999999999999999998887788899999
Q ss_pred EEccCC--CCCcccHHhccCCC---CCCCHH----HHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDP--TLFNGTVRYNLDPL---SQHTDQ----EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP--~LF~gTIr~NLdp~---~~~sd~----eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+| .++..|+++|+... ...+++ ++.++++++++.+..... ..+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 45678999999632 112322 356777888876654443 3589999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+++|++|+|||||++||..+.+.+.+.|++..+ +.|+|++||+++.+..||+|++|++|++++.|++++++++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999987543 4899999999999888999999999999999999998764
No 145
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.9e-40 Score=371.78 Aligned_cols=223 Identities=24% Similarity=0.306 Sum_probs=189.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~ 1061 (1232)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4899999999953 4699999999999999999999999999999999999999999999999999876543 4578
Q ss_pred cEEEEccCCCCCcc-cHHhccCC----CCCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDP----LSQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp----~~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
+++|+||++.+|.+ |+++|+.. ....+ ++++.++|+.+++.+.... ...+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999976 99999863 11122 2346677888877654332 23579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|++|||||||++||..+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+++++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998753 26899999999999987 99999999999999999999987
Q ss_pred hcCCHHHHHHH
Q 000904 1210 REGSLFGQLVR 1220 (1232)
Q Consensus 1210 ~~~~~f~~l~~ 1220 (1232)
++....+.++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 65444555553
No 146
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.3e-40 Score=364.41 Aligned_cols=205 Identities=27% Similarity=0.414 Sum_probs=177.9
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
++++|++++|+... +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68899999996421 169999999999999999999999999999999999999999999999999976 456778999
Q ss_pred EEEccCCCCCcc-cHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+|+||+|.+|.+ |+++|+... ... .++++.++++.+++.+.... .+.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999885 999998521 111 23467788888888665443 34579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|++++|++|+|||||++||+.+.+.+.+.|++.. +++|+|+||||++.+.+ ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 47899999999999877 8999999999998764
No 147
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=388.38 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=188.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 3889999999963 4699999999999999999999999999999999999999999999999999876643 56899
Q ss_pred EEccCCCCCcc-cHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.+|.. |+++|+.... ..+ ++++.++++.+++.+...+. ..+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999965 9999996321 122 34578888888887654443 34799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+|||||++||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987532 7899999999998876 999999999999999999999987665
Q ss_pred HH
Q 000904 1214 LF 1215 (1232)
Q Consensus 1214 ~f 1215 (1232)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 54
No 148
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.9e-40 Score=365.99 Aligned_cols=211 Identities=26% Similarity=0.390 Sum_probs=182.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 688999999953 46999999999999999999999999999999999999999999999999998776543 458999
Q ss_pred EccCCCC-CcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTL-FNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~L-F~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+ +..|+++|+.... ..+ ++++.+.++..++.+. ....+.+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 5789999996422 112 2345667777666443 2334568999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+++|+||+|||||++||..+.+.+.+.|++.. .++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999998754 37899999999999988999999999999999999999865
No 149
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=370.50 Aligned_cols=222 Identities=25% Similarity=0.376 Sum_probs=188.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999999864 3455
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---CC-----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH-----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~-----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|+.++|+||+|.+|+.|+++|+.... .. .++++.++++.+++++... ..+ ...+.+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~----~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DNL----DRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HHh----ccChhhCCHHHHH
Confidence 6788999999999999999999996321 11 1245677888887753211 112 2345689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|++|||||||++||+++.+.+.+.|++..++.|||+|||+++.+.+ ||+|++|++|++++.|++++++
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999887 8999999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
..+.-.|
T Consensus 235 ~~~~~~~ 241 (251)
T PRK14251 235 IAPKKQI 241 (251)
T ss_pred hCCCCHH
Confidence 7654434
No 150
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=369.43 Aligned_cols=221 Identities=25% Similarity=0.397 Sum_probs=189.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc---ccC--CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL---VEP--AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl---~ep--~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4889999999963 4699999999999999999999999999999999997 454 589999999999764 346
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC---CC-----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|.+|+++|+... .. ..+++++++++.+++.+.+.. .....+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 778899999999999989999998631 11 123457788888888654432 123456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|++++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987668999999999999876 9999999999999999999998
Q ss_pred hhcCCH
Q 000904 1209 KREGSL 1214 (1232)
Q Consensus 1209 ~~~~~~ 1214 (1232)
+++...
T Consensus 234 ~~~~~~ 239 (250)
T PRK14245 234 TNPEKE 239 (250)
T ss_pred cCCCCh
Confidence 765443
No 151
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-40 Score=374.47 Aligned_cols=213 Identities=22% Similarity=0.352 Sum_probs=187.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+.+ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999533 359999999999999999999999999999999999999999999999999988777888999999
Q ss_pred EccCCC--CCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1066 IPQDPT--LFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1066 VpQdP~--LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+||+|. +|..|+++|+.... ..+ ++++.++++.+++.+.....+ ..||+|||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 999984 78889999996211 122 345788899988876554443 4799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+.+|++|||||||++||..+.+.+.+.|++..+ +.|||++||+++.+.+ ||||++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999987543 7899999999999965 999999999999999999999764
No 152
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=371.51 Aligned_cols=221 Identities=22% Similarity=0.377 Sum_probs=189.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCCCC--hHh
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISKLG--LHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i~--l~~ 1058 (1232)
-+++|++++|++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468899999953 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred hhccEEEEccCCCCCcccHHhccCCC---CC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPL---SQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~---~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|++++|+||+|.+|.+|+++|+... .. ..++++.++++.+++.+.+.. .+...+.+||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGD-------RLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhh-------HhhcChhhCCHHHHH
Confidence 78899999999999999999998631 11 123457788898888653321 123345689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+||||++.+.+ ||+|++|++|++++.|++++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987668999999999999876 9999999999999999999999
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
+++...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 8765544
No 153
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.3e-40 Score=364.37 Aligned_cols=202 Identities=30% Similarity=0.431 Sum_probs=173.8
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh----h
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD----L 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~----L 1059 (1232)
++++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hccEEEEccCCCCCcc-cHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1060 RSRFGIIPQDPTLFNG-TVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~g-TIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++.+++.+.... .+.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 5789999999999876 999998632 111 23457788888877654433 3358999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
+|||||+++|++|+|||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999997643 7899999999999888999999999974
No 154
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1e-39 Score=368.24 Aligned_cols=216 Identities=25% Similarity=0.327 Sum_probs=192.2
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
+.|+++|++++ + .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+|| ++
T Consensus 38 ~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i 100 (282)
T cd03291 38 NNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RI 100 (282)
T ss_pred CeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EE
Confidence 56999999985 2 4599999999999999999999999999999999999999999999998 49
Q ss_pred EEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1064 GIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1064 ~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+|+||+|.+|.+|+++|+.......+.++.++++.+++.+.+..+|.++++.+.+.+.+||+|||||++|||||+++|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999975333445567788888999999988999999999889999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHH-HHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHH
Q 000904 1144 LVLDEATASIDNATDMILQKT-IRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~-L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|||||||++||+++...+.+. +++...+.|||+|||+++.+..||+|++|++|+++++|+++++.+. ...|.+
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~ 254 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSS 254 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHH
Confidence 999999999999999888765 4444457899999999999988999999999999999999999864 334443
No 155
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.7e-40 Score=384.82 Aligned_cols=216 Identities=23% Similarity=0.397 Sum_probs=191.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|+|+.+|++|+|.+||.++..++.+ +++++
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEccCCCCCcc-cHHhccCC-CC--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDP-LS--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp-~~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.+|.. ||++|+.. .. ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 99999963 11 122 345778888888887766554 4799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+||||++.+.. +|+|++|++|++++.|+|+++++++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987543 7899999999999876 999999999999999999999988765
Q ss_pred HH
Q 000904 1214 LF 1215 (1232)
Q Consensus 1214 ~f 1215 (1232)
.|
T Consensus 239 ~~ 240 (375)
T PRK09452 239 LF 240 (375)
T ss_pred HH
Confidence 55
No 156
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=367.78 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=190.2
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCCC--Ch
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--P---AGGKILVDGIDISKL--GL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~i--~l 1056 (1232)
|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... ..
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 67999999999963 469999999999999999999999999999999999986 4 689999999999753 34
Q ss_pred HhhhccEEEEccCCCCCc-ccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1057 HDLRSRFGIIPQDPTLFN-GTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~-gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
..+|++++|+||+|.+|. .|+++|+... +..+ ++++.++++.+++.+.+... ....+.+||+||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHHH
Confidence 567889999999999887 5999999631 1111 34567788888886544322 123467899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|||++||||++++|++|||||||++||..+.+.+.+.|++..++.|||++||+++.+.+ ||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999976 99999999999999999999
Q ss_pred HHhhcCCH
Q 000904 1207 LMKREGSL 1214 (1232)
Q Consensus 1207 Ll~~~~~~ 1214 (1232)
++.++...
T Consensus 234 ~~~~~~~~ 241 (252)
T PRK14256 234 IFTTPEKK 241 (252)
T ss_pred HHhCCCcH
Confidence 98765543
No 157
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2e-40 Score=351.08 Aligned_cols=178 Identities=34% Similarity=0.539 Sum_probs=165.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+...+++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999965434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
+||+|.+|+.|+++|+ +.+||+|||||++||||++++|++|+
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999987 35799999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEec
Q 000904 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g 1202 (1232)
|||||++||.++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999876789999999999999889999999999998864
No 158
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.9e-40 Score=359.50 Aligned_cols=198 Identities=27% Similarity=0.397 Sum_probs=173.1
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 367999999632 469999999999999999999999999999999999999999999999998864 4567889999
Q ss_pred ccCC--CCCcccHHhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1067 PQDP--TLFNGTVRYNLDPLS---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1067 pQdP--~LF~gTIr~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
||+| .+|..|+++|+.... ...++++.++++.+++.+.....| ..||||||||++|||||+++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467889999996422 123457889999999876644433 479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
++|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.+ ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999875 357899999999999986 9999999999975
No 159
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=370.02 Aligned_cols=222 Identities=22% Similarity=0.354 Sum_probs=189.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999963 4699999999999999999999999999999999999985 799999999998653 345
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
.+|+.++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.... .+ .....+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSD---RL----KSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhh---hh----cCChhhCCHHHHHH
Confidence 678899999999999999999999631 1122 2346778888887543211 12 23456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|||||+++|+||+|||||++||.++...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+|+++++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999986567899999999999977 99999999999999999999987
Q ss_pred hcCCHH
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~~~f 1215 (1232)
++...+
T Consensus 243 ~~~~~~ 248 (258)
T PRK14268 243 NPREKS 248 (258)
T ss_pred CCCCHH
Confidence 654443
No 160
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-40 Score=370.24 Aligned_cols=219 Identities=26% Similarity=0.437 Sum_probs=190.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 20 ALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 5999999999953 469999999999999999999999999999999999997 579999999999864 3466
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|+.++|+||+|.+|.+|+++|+... +.. .++++.++++.+++.+.+.. .....+.+||+||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHHH
Confidence 778999999999999999999999631 111 23457778888888654422 234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|++|+|||||++||..+...+.+.|++..++.|+|+|||+++.+.+ ||+|++|++|++++.|++++++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999998
Q ss_pred hhcC
Q 000904 1209 KREG 1212 (1232)
Q Consensus 1209 ~~~~ 1212 (1232)
+.+.
T Consensus 251 ~~~~ 254 (267)
T PRK14237 251 TNPK 254 (267)
T ss_pred cCCC
Confidence 7543
No 161
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.2e-40 Score=370.84 Aligned_cols=224 Identities=25% Similarity=0.381 Sum_probs=187.4
Q ss_pred EEEEeeEeEecCC-------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh
Q 000904 986 VDICDLQIRYRPD-------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~-------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~ 1058 (1232)
++++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 356999999999999999999999999999999999999999999999999998876543
Q ss_pred ---hhccEEEEccCCC--CC-cccHHhccCC----CCC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1059 ---LRSRFGIIPQDPT--LF-NGTVRYNLDP----LSQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1059 ---LR~~i~iVpQdP~--LF-~gTIr~NLdp----~~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
+|++++|+||+|. ++ ..|+++|+.. ... ..++++.++++.+++.+.. ....+.+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhCC
Confidence 6788999999983 44 4699999841 111 1234577888888775322 122346899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+.+|++|+|||||++||.++.+.+.+.|++..+ +.|||+|||+++.+.+ ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999987533 7899999999999986 999999999999999
Q ss_pred cChhHHHhhcCCHHHHHH
Q 000904 1202 DEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~l~ 1219 (1232)
|+++++++.++...+.+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999875433444444
No 162
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.5e-40 Score=359.50 Aligned_cols=202 Identities=29% Similarity=0.403 Sum_probs=178.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+. .++|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 468999999952 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EccCCCCC-cccHHhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLS---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
+||+|.+| ..|+++|+.... ..+++++.++++..++.+..... +..||||||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999877 579999986421 23567788999999987665443 3479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
++|+|||||++||..+.+.+.+.|++.. .++|+|++|||++.+.+ ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998753 47899999999999976 9999999999998765
No 163
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-40 Score=373.29 Aligned_cols=216 Identities=27% Similarity=0.410 Sum_probs=190.0
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc---cEEEECCeeCCCCChHhhh
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG---GKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~---G~I~IDG~dI~~i~l~~LR 1060 (1232)
+.|+++|++++|++...++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 3589999999996433469999999999999999999999999999999999999987 8999999999888777888
Q ss_pred ccEEEEccCC--CCCcccHHhccCCC---CCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1061 SRFGIIPQDP--TLFNGTVRYNLDPL---SQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1061 ~~i~iVpQdP--~LF~gTIr~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++++|+||+| .+++.|+++|+... ...++ +++.++++.+++.+.....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999999 46788999999632 11233 34778899888876554443 58999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHh
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
+|||||+++|++|||||||++||..+...+.+.|++..+ ++|||++||+++.+..||++++|++|++++.|++++++.
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999987543 789999999999998899999999999999999999876
Q ss_pred h
Q 000904 1210 R 1210 (1232)
Q Consensus 1210 ~ 1210 (1232)
+
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
No 164
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-40 Score=379.05 Aligned_cols=226 Identities=19% Similarity=0.320 Sum_probs=187.2
Q ss_pred eEEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc----CCccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE----PAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e----p~~G~I~IDG~dI~~i~l~~ 1058 (1232)
.++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996432 359999999999999999999999999999999999998 48999999999999988766
Q ss_pred hhc----cEEEEccCCC--CCc-ccHHhc----cCCCCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCC
Q 000904 1059 LRS----RFGIIPQDPT--LFN-GTVRYN----LDPLSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123 (1232)
Q Consensus 1059 LR~----~i~iVpQdP~--LF~-gTIr~N----Ldp~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nL 1123 (1232)
+|+ +++||||||. ++. -|+.++ +...... .++++.++|++++|.+.... ....+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 543 6999999995 332 255544 3322111 23567889999998653211 12345689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
|||||||++|||||+.+|++||+||||++||..+...+.+.|++.. .+.|+|+||||++.+.. ||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998753 37899999999999965 99999999999999
Q ss_pred ecChhHHHhhcCCHHHHH
Q 000904 1201 YDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~f~~l 1218 (1232)
.|+++++++++...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 999999998876666543
No 165
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.9e-40 Score=368.62 Aligned_cols=217 Identities=25% Similarity=0.394 Sum_probs=186.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC----------
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---------- 1055 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---------- 1055 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999963 46999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHhhhccEEEEccCCCCCc-ccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCC
Q 000904 1056 ---LHDLRSRFGIIPQDPTLFN-GTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123 (1232)
Q Consensus 1056 ---l~~LR~~i~iVpQdP~LF~-gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nL 1123 (1232)
...+|++++|+||+|.+|. .|+++|+... ... .++++.++++.+++.+.... .+.+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhhc
Confidence 2467889999999998884 7999999631 111 23457788888877655443 34579
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
|||||||++|||||+++|++|+|||||++||..+...+.+.|++..+ +.|+|+|||+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987543 7899999999999976 99999999999999
Q ss_pred ecChhHHHhhcCCHH
Q 000904 1201 YDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~f 1215 (1232)
.|+++++.+++...+
T Consensus 228 ~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 228 QGKPDEIFRQPKEER 242 (252)
T ss_pred eCCHHHHhcCCCcHH
Confidence 999999987654333
No 166
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-40 Score=368.32 Aligned_cols=221 Identities=22% Similarity=0.353 Sum_probs=188.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--P---AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4899999999963 369999999999999999999999999999999999997 3 59999999999864 4456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|.+|+++|+... +..+ ++++.++++..++.+.+.. .....+.+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 778899999999999999999998532 1112 2345667888887654322 123355689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|+||+|||||++||.++...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999986667899999999999876 9999999999999999999998
Q ss_pred hhcCCH
Q 000904 1209 KREGSL 1214 (1232)
Q Consensus 1209 ~~~~~~ 1214 (1232)
.++...
T Consensus 243 ~~~~~~ 248 (259)
T PRK14274 243 SNPDDQ 248 (259)
T ss_pred hCCCCH
Confidence 765543
No 167
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-40 Score=360.78 Aligned_cols=202 Identities=31% Similarity=0.467 Sum_probs=177.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++++|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 478999999953 36999999999999 99999999999999999999999999999999999998776 778899999
Q ss_pred EccCCCCCcc-cHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+... ...+ ++++.++++.+++.+.... ...+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999998876 999998531 1111 3457888999888765332 2357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|+|||||++||..+.+.+.+.|++..++.|+|+|||+++.+.+ |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999986667999999999999976 8999999999998865
No 168
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-40 Score=367.32 Aligned_cols=220 Identities=24% Similarity=0.383 Sum_probs=187.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--P---AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999963 469999999999999999999999999999999999954 6 499999999999653 345
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... +.. .++++.++++.+++.+.+.. .....+.+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998621 111 23456778888887654322 223456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||.++...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999986567899999999999876 9999999999999999999998
Q ss_pred hhcCC
Q 000904 1209 KREGS 1213 (1232)
Q Consensus 1209 ~~~~~ 1213 (1232)
+++..
T Consensus 236 ~~~~~ 240 (252)
T PRK14239 236 MNPKH 240 (252)
T ss_pred hCCCC
Confidence 76543
No 169
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3e-40 Score=378.21 Aligned_cols=213 Identities=27% Similarity=0.424 Sum_probs=185.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..|+++|++++|+. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 35999999999963 46999999999999999999999999999999999999999999999999997755 4578999
Q ss_pred EEEccCCCCCc-ccHHhccCCCCC---CCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLSQ---HTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~~---~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
||+||+|.+|. .|+++|+..+.. .++ +++.++++.+++.+.. ++.+ .+||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-------DAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-------cCch----hhCCHHHHHHHHHHH
Confidence 99999999885 699999964221 222 3456778888776432 2222 479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+.+|++|+|||||++||+.+.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|+|+++.++
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999854 37899999999999977 999999999999999999999764
No 170
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.1e-40 Score=366.40 Aligned_cols=211 Identities=24% Similarity=0.337 Sum_probs=184.6
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |.+++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999963 469999999999999999999999999999999999999999999999999988776654 45799
Q ss_pred EEccCCCCCcc-cHHhccCCCCC------------C---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ------------H---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~------------~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
|+||+|.+|.+ |+++|+..... . .++++.++++..++.+.. .....+||||||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----------DRLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHH
Confidence 99999999986 99999964211 0 234567777777765432 234468999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++||||++++|++|+|||||++||+++.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 9999999999999999999999999999999999999986567899999999999987 999999999999999999998
Q ss_pred Hh
Q 000904 1208 MK 1209 (1232)
Q Consensus 1208 l~ 1209 (1232)
+.
T Consensus 230 ~~ 231 (242)
T TIGR03411 230 QA 231 (242)
T ss_pred hc
Confidence 75
No 171
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-40 Score=366.66 Aligned_cols=222 Identities=25% Similarity=0.431 Sum_probs=189.6
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CCh
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1056 (1232)
|.++++|++++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.+ .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 56899999999963 3699999999999999999999999999999999999863 69999999999875 455
Q ss_pred HhhhccEEEEccCCCCCcccHHhccCCCC---C-C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLDPLS---Q-H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..+|++++|+||+|.+|..|+++|+.... . . .++++.++++.+++.+.+.. .....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 67889999999999999999999996311 1 1 23456777888877543322 22334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++|||||+++|++|+|||||++||..+...+.+.|++..++.|||+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999986567899999999998877 999999999999999999999
Q ss_pred HhhcCCH
Q 000904 1208 MKREGSL 1214 (1232)
Q Consensus 1208 l~~~~~~ 1214 (1232)
..++...
T Consensus 233 ~~~~~~~ 239 (250)
T PRK14240 233 FTNPKDK 239 (250)
T ss_pred HhCCCCh
Confidence 8765433
No 172
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-40 Score=372.64 Aligned_cols=215 Identities=22% Similarity=0.361 Sum_probs=188.9
Q ss_pred eEEEEeeEeEecCC-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 985 KVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
-++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+..++|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+| .++..|+.+|+.... ..++ +++.++++.+++.+.... .+..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 477889999996321 2233 345678888888665433 2357999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||+++|+||||||||++||..+.+.+.+.|++..+ ++|+|+||||++.+..||+|++|++|++++.|++++++.+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987543 7899999999999988999999999999999999999864
No 173
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-40 Score=366.30 Aligned_cols=223 Identities=25% Similarity=0.397 Sum_probs=190.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999998753 345
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .....+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678899999999999999999999631 111 23446778888888654322 223456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999986667899999999998876 9999999999999999999998
Q ss_pred hhcCCHHH
Q 000904 1209 KREGSLFG 1216 (1232)
Q Consensus 1209 ~~~~~~f~ 1216 (1232)
+++...|.
T Consensus 234 ~~~~~~~~ 241 (250)
T PRK14262 234 ERPKNKLT 241 (250)
T ss_pred hCCCChHH
Confidence 76544444
No 174
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-40 Score=369.42 Aligned_cols=220 Identities=24% Similarity=0.439 Sum_probs=188.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5899999999963 469999999999999999999999999999999999875 789999999999965 3445
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|.+|+++|+... +.. .++.+.++++.+++.+.+.. .....+.+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHHH
Confidence 678899999999999999999998631 111 13456778888877533221 123345789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||++||+++.+.+ ||+|++|++|++++.|++++++
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987567899999999998876 9999999999999999999998
Q ss_pred hhcCC
Q 000904 1209 KREGS 1213 (1232)
Q Consensus 1209 ~~~~~ 1213 (1232)
+++..
T Consensus 252 ~~~~~ 256 (268)
T PRK14248 252 TSPKQ 256 (268)
T ss_pred hCCCC
Confidence 76443
No 175
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.8e-40 Score=360.72 Aligned_cols=203 Identities=30% Similarity=0.441 Sum_probs=174.4
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---hh
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR 1060 (1232)
++++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.|+.+++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 46999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -ccEEEEccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1061 -SRFGIIPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1061 -~~i~iVpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++++|+||+|.+|. .|+++|+... .... ++++.++++.+++.+.... .+..||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 67999999999885 5999998631 1121 3356778888777654333 3357999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEE
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLA 1199 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vv 1199 (1232)
+||||++++|+||+|||||++||.++.+.+.+.|++.. .++|+|+||||++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998753 378999999999999889999999999986
No 176
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-40 Score=371.46 Aligned_cols=213 Identities=26% Similarity=0.412 Sum_probs=185.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhhhccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDLRSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~i~ 1064 (1232)
++++|++++|+++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...++++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999533 45999999999999999999999999999999999999999999999999998765 467788999
Q ss_pred EEccCCC--CCcccHHhccCCCCC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDPT--LFNGTVRYNLDPLSQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP~--LF~gTIr~NLdp~~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+|. ++..|+++|+..... .+ ++++.++++.+++.+.... .+..||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHHH
Confidence 9999985 667899999963211 12 3456777888887655433 34579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+++|+||+|||||++||+.+...+.+.|++.. ++.|||++||+++.+..||+|++|++|++++.|++++++.+
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998753 47899999999999988999999999999999999998764
No 177
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.2e-40 Score=364.85 Aligned_cols=212 Identities=29% Similarity=0.453 Sum_probs=181.6
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
++++|++++|+. +.+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 468999999953 469999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEccCCCCCcc-cHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||+|.+|.+ |+++|+... .... ++++.++++..++.+.. .....+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-----------KSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999998632 1112 23455667666664432 33446899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
++.+|++|+|||||++||.++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|+++++...
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 999999999999999999999999999998753 47899999999988877 999999999999999999998653
No 178
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-40 Score=373.29 Aligned_cols=216 Identities=27% Similarity=0.392 Sum_probs=183.6
Q ss_pred eEEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChH
Q 000904 985 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~ 1057 (1232)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 3699999999999999999999999999999999999999999999999998653 345
Q ss_pred hhhccEEEEccCC--CCCcccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDP--TLFNGTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP--~LF~gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..|++++|+||+| .+|..|+++|+... ...+ ++.+.++++.+++.+... .....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI----------SKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh----------hCCcccCCHHHH
Confidence 6788999999998 57888999999521 1122 234677788887752221 223458999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||++|||||+++|++|||||||++||..+...+.+.|++.. .+.|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 47899999999999876 99999999999999999999
Q ss_pred HHhh
Q 000904 1207 LMKR 1210 (1232)
Q Consensus 1207 Ll~~ 1210 (1232)
++++
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 8754
No 179
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.8e-40 Score=366.43 Aligned_cols=214 Identities=27% Similarity=0.378 Sum_probs=183.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC--------hH
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG--------LH 1057 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--------l~ 1057 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 789999999963 36999999999999999999999999999999999999999999999999987542 34
Q ss_pred hhhccEEEEccCCCCCc-ccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDPTLFN-GTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~-gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|++++|+||+|.+|. .|+++|+... .... ++++.++++..++.+.. ...+.+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq~ 150 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQQ 150 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHHH
Confidence 67889999999998885 6999998531 1112 23466777777765432 234568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||++|||||+.+|++|||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|++++
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998754 37899999999999977 99999999999999999999
Q ss_pred HHhhcC
Q 000904 1207 LMKREG 1212 (1232)
Q Consensus 1207 Ll~~~~ 1212 (1232)
+++.+.
T Consensus 231 ~~~~~~ 236 (250)
T PRK11264 231 LFADPQ 236 (250)
T ss_pred HhcCCC
Confidence 987543
No 180
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-40 Score=373.03 Aligned_cols=215 Identities=25% Similarity=0.370 Sum_probs=183.3
Q ss_pred EEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChHh
Q 000904 986 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~ 1058 (1232)
++++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996422 3699999999999999999999999999999999999999999999999999764 3567
Q ss_pred hhccEEEEccCC--CCCcccHHhccCCCC---CCCHH----HHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHTDQ----EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd~----eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|++++|+||+| .+|..|+++|+.... ..+++ .+.++++.+++.+.. ......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 888999999998 688899999996311 12232 345667777775321 12334689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 37899999999999976 899999999999999999998
Q ss_pred Hhh
Q 000904 1208 MKR 1210 (1232)
Q Consensus 1208 l~~ 1210 (1232)
+++
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
No 181
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-40 Score=370.43 Aligned_cols=213 Identities=25% Similarity=0.362 Sum_probs=187.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcc-cHHhccCCCC-----------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLS-----------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~-----------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
|+||++.++.+ |+++|+.... ...++++.++++.+++.+..... ..+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHHH
Confidence 99999877654 9999986311 01245688899999886654433 2479999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+.+|+||||||||++||..+.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998753 37899999999999976 99999999999999999999865
Q ss_pred h
Q 000904 1210 R 1210 (1232)
Q Consensus 1210 ~ 1210 (1232)
.
T Consensus 238 ~ 238 (265)
T PRK10575 238 G 238 (265)
T ss_pred H
Confidence 3
No 182
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-40 Score=367.61 Aligned_cols=221 Identities=23% Similarity=0.377 Sum_probs=189.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CCh
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l 1056 (1232)
+.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||+++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36999999999963 4699999999999999999999999999999999999985 48999999999864 445
Q ss_pred HhhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..+|.+++|+||+|.+|..|+++|+... +... ++.+.++++.+++.+.+... ....+.+||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6778899999999999999999999631 1112 23466888888886544322 2345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe-----CCEEEEec
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS-----DGKLAEYD 1202 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~-----~G~vvE~g 1202 (1232)
||++|||||+++|++|+|||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999986667899999999999987 89999997 59999999
Q ss_pred ChhHHHhhcCC
Q 000904 1203 EPMKLMKREGS 1213 (1232)
Q Consensus 1203 ~p~~Ll~~~~~ 1213 (1232)
+|+++++++..
T Consensus 237 ~~~~~~~~~~~ 247 (259)
T PRK14260 237 VTTQIFSNPLD 247 (259)
T ss_pred CHHHHhcCCCC
Confidence 99999876543
No 183
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-40 Score=365.87 Aligned_cols=222 Identities=20% Similarity=0.378 Sum_probs=192.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999963 469999999999999999999999999999999999975 389999999999875 3466
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
++|++++|+||+|.+|.+|+++|+... +..+ ++++.++++.+++.+.+... ....+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 789999999999999999999999632 1112 24467788999987665432 23456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|+||+|||||++||..+...+.+.|++..+++|+|++||+++.+.+ ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987668899999999999988 8899999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
.++...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 7766554
No 184
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-40 Score=364.95 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=181.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC------CCChHhh
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS------KLGLHDL 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~------~i~l~~L 1059 (1232)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ......+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999953 46999999999999999999999999999999999999999999999999874 1234567
Q ss_pred hccEEEEccCCCCCcc-cHHhccCC--CC--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 RSRFGIIPQDPTLFNG-TVRYNLDP--LS--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~g-TIr~NLdp--~~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
|++++|+||+|.+|.+ |+++|+.. .. ... .+++.++++..++.+.... ...+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qr 149 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-----------FPLHLSGGQQQR 149 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHH
Confidence 8899999999999865 99999852 11 111 2345667777777554433 335899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++||||++++|++|||||||++||.++...+.+.|++.. .+.|+|++||+++.+.+ ||++++|++|++++.|+++++.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999999998754 37899999999999976 9999999999999999999876
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
+.
T Consensus 230 ~~ 231 (242)
T PRK11124 230 QP 231 (242)
T ss_pred Cc
Confidence 43
No 185
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=369.59 Aligned_cols=219 Identities=21% Similarity=0.406 Sum_probs=188.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 39 ~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 39 VIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred eEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 5899999999963 469999999999999999999999999999999999997 689999999999865 3456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC----C--CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL----S--QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~----~--~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
.+|++++|+||+|.+|.+|+++|+... + ...+++++++++.+++.+.+... ....+.+||||||||+
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ-------LDSSGLDLSGGQQQRL 189 (285)
T ss_pred hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH-------HhCCcccCCHHHHHHH
Confidence 778899999999999988999998631 1 11245688889888886443221 2334568999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEE-EEeCCEEEEecChhHHHh
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVL-AISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVl-VL~~G~vvE~g~p~~Ll~ 1209 (1232)
+|||||+++|+||||||||++||.++.+.+.+.|++..++.|||+|||+++.+.. |||++ +|++|++++.|+++++++
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987667899999999999987 99975 579999999999999987
Q ss_pred hcC
Q 000904 1210 REG 1212 (1232)
Q Consensus 1210 ~~~ 1212 (1232)
++.
T Consensus 270 ~~~ 272 (285)
T PRK14254 270 NPE 272 (285)
T ss_pred CcC
Confidence 544
No 186
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-40 Score=370.96 Aligned_cols=215 Identities=22% Similarity=0.393 Sum_probs=187.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754346999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCC--CCcccHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1065 IIPQDPT--LFNGTVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1065 iVpQdP~--LF~gTIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
|+||+|. ++..|+++|+.... .. .++++.++++.+++.+.... .+.+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999994 44668899885311 11 23456778888887654332 34589999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|++++|++|||||||++||..+.+.+.+.|++.. .++|+|++||+++.+..||||++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998753 27899999999999988999999999999999999998764
No 187
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=364.92 Aligned_cols=219 Identities=21% Similarity=0.370 Sum_probs=188.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4899999999963 4699999999999999999999999999999999999985 799999999999653 345
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH-T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~-s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+.... .. + ++++.++++.+++.+.+... ....+.+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 6788999999999999999999996311 11 1 24567888888886443321 23356689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|+||+|||||++||..+...+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|++++++
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999986667899999999999887 9999999999999999999998
Q ss_pred hhcC
Q 000904 1209 KREG 1212 (1232)
Q Consensus 1209 ~~~~ 1212 (1232)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14270 235 LEPQ 238 (251)
T ss_pred cCCC
Confidence 7543
No 188
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-40 Score=371.76 Aligned_cols=215 Identities=25% Similarity=0.384 Sum_probs=188.1
Q ss_pred eEEEEeeEeEecCC----CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhh
Q 000904 985 KVDICDLQIRYRPD----SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~----~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~L 1059 (1232)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999997654 4667
Q ss_pred hccEEEEccCCC--CCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 RSRFGIIPQDPT--LFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 R~~i~iVpQdP~--LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
|++++|+||+|. +|..|+.+|+.... ..+ ++++.++++.+++.+...+.| .+||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999994 67778999985321 112 456788899999877655543 4799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++|||||+++|++|||||||++||..+...+.+.|++.. .++|||+||||++.+..||++++|++|++++.|+|+++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 378999999999999889999999999999999999997
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
No 189
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-40 Score=367.96 Aligned_cols=212 Identities=23% Similarity=0.387 Sum_probs=186.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+..++++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccCCCCCcc-cHHhccCCC--------CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL--------SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~--------~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
+||++.++.+ |+++|++.. +. ..++++.++++.+++.+.... .+..||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHHH
Confidence 9999998876 999999742 11 123457788888888654333 345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||++++|++|||||||++||.++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|+++++..+
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 999999999999999999999999999999998753 47899999999999876 999999999999999999998753
No 190
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=364.05 Aligned_cols=219 Identities=25% Similarity=0.400 Sum_probs=188.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~i--~l~ 1057 (1232)
.++++|++++|.. +++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5899999999963 46999999999999999999999999999999999999997 69999999998653 456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---C-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---Q-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+.... . .. ++.+.++++.+++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 7789999999999999999999996321 1 11 2345667777777654332 234567789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999876557899999999999988 7999999999999999999998
Q ss_pred hhcC
Q 000904 1209 KREG 1212 (1232)
Q Consensus 1209 ~~~~ 1212 (1232)
.++.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 7644
No 191
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.6e-40 Score=363.24 Aligned_cols=213 Identities=26% Similarity=0.401 Sum_probs=183.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC--ChHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL--GLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i--~l~~LR~~i 1063 (1232)
++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 679999999963 4699999999999999999999999999999999999999999999999999864 345678899
Q ss_pred EEEccCCCCCc-ccHHhccCCCC----CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS----QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|.+|. .|+++|+.... ..+ ++++.++++..++.+.... .+..||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999998885 69999996311 111 2345677777776544333 3458999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
||++++|++|+|||||++||.++...+.+.|++.. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998753 47899999999999976 9999999999999999999988654
No 192
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.1e-40 Score=359.57 Aligned_cols=200 Identities=31% Similarity=0.443 Sum_probs=173.3
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36799999964324699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred ccCCC--CCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1067 PQDPT--LFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1067 pQdP~--LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
||+|. ++..|+++|+.... ..+ ++++.++++..++.+...+ ...+||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 99983 67889999986321 112 3356678888877654433 3458999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998754 37899999999999988 99999999985
No 193
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.1e-40 Score=359.43 Aligned_cols=201 Identities=26% Similarity=0.370 Sum_probs=174.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR~~ 1062 (1232)
++++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999633 469999999999999999999999999999999999999999999999999987654 356889
Q ss_pred EEEEccCCCCCc-ccHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+|. .|+++|+.... .. .++++.++++.+++.+..... ..+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHH
Confidence 999999999887 49999986321 11 234577888888886554333 347999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
|||+++|++|+|||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 47899999999999987 899999999974
No 194
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=365.80 Aligned_cols=220 Identities=23% Similarity=0.388 Sum_probs=187.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 24 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 5999999999963 359999999999999999999999999999999999997 699999999999853 4556
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC---CCCC-----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL---SQHT-----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~~s-----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... ...+ ++.+.++++..++.+.+. ......+.+|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHHHH
Confidence 788899999999999989999999621 1221 223456666666543222 2234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|||||+++|+||||||||++||..+...+.+.|++..+++|+|+||||++.+.+ ||++++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999998
Q ss_pred hhcCC
Q 000904 1209 KREGS 1213 (1232)
Q Consensus 1209 ~~~~~ 1213 (1232)
.++..
T Consensus 255 ~~~~~ 259 (271)
T PRK14238 255 SNPSD 259 (271)
T ss_pred cCCCC
Confidence 76543
No 195
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.3e-40 Score=359.04 Aligned_cols=202 Identities=23% Similarity=0.385 Sum_probs=174.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999999766543 468999
Q ss_pred EccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|. .|+++|+... .... ++++.++++.+++.+..... ..+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999885 6999998632 1112 33567778888876554433 357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|+|||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998753 37899999999999887 8999999999999876
No 196
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-40 Score=360.67 Aligned_cols=203 Identities=27% Similarity=0.330 Sum_probs=175.3
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
++++|++++|+... +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999996321 469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCCCCc-ccHHhccCCCC---C----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS---Q----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~---~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+|+||+|.+|. .|+++|+.... . ..++++.++++.+++.+...+.+ .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999887 69999986311 1 12356788888888876554433 479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAIS--DGKLAEYDEP 1204 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~--~G~vvE~g~p 1204 (1232)
||+++|++|||||||++||+.+.+.+.+.|++.. .+.|||+|||+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998753 37899999999998876 99999999 7999987753
No 197
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.7e-40 Score=359.85 Aligned_cols=200 Identities=24% Similarity=0.364 Sum_probs=174.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR~~ 1062 (1232)
++++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCC-CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 689999999952 24699999999999999999999999999999999999999999999999999887643 46789
Q ss_pred EEEEccCCCCCc-ccHHhccCCC----C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPL----S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~----~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+|. .|+++|+... + ...+++++++++..++.+.....+ .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999885 6999998632 1 112456888999998876544433 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998753 47899999999999987 89999999985
No 198
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=367.51 Aligned_cols=221 Identities=24% Similarity=0.370 Sum_probs=191.0
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CC
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LG 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~ 1055 (1232)
.+.++++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 356999999999953 4699999999999999999999999999999999999984 89999999999975 34
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
...+|++++|+||++.+|.+|+++|+... .. .. ++++.++++.+++.+.+.. .....+.+||+||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56788999999999999999999999631 11 11 3457788888888754432 2234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|||++|||||+++|+||||||||++||..+...+.+.|++..++.|+|++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HHhhcC
Q 000904 1207 LMKREG 1212 (1232)
Q Consensus 1207 Ll~~~~ 1212 (1232)
+.+++.
T Consensus 254 ~~~~~~ 259 (272)
T PRK14236 254 LFTSPA 259 (272)
T ss_pred HhcCCC
Confidence 986543
No 199
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1e-39 Score=376.74 Aligned_cols=226 Identities=24% Similarity=0.366 Sum_probs=187.8
Q ss_pred eEEEEeeEeEecC--CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhh
Q 000904 985 KVDICDLQIRYRP--DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~--~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~L 1059 (1232)
.++++|++++|+. +...+++||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999953 2246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----ccEEEEccCCC--CCc-ccHHhccC----CCCCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1060 R----SRFGIIPQDPT--LFN-GTVRYNLD----PLSQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1060 R----~~i~iVpQdP~--LF~-gTIr~NLd----p~~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
| ++|+||||||. ++. -|+.+|+. .....+. +++.++|+.+++.+. . ..+...+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~-------~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEA-------R-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCh-------H-HHhcCCcccCC
Confidence 3 47999999993 443 46666652 2222222 346677888777431 1 11334567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+||||++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999887533 7899999999999976 999999999999999
Q ss_pred cChhHHHhhcCCHHHHH
Q 000904 1202 DEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~l 1218 (1232)
|+++++++++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998876666553
No 200
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-40 Score=362.51 Aligned_cols=213 Identities=23% Similarity=0.348 Sum_probs=180.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh-hhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1063 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998887654 57889
Q ss_pred EEEccCCCCCcc-cHHhccCCCCC-CC----HHHHHHHHHHc-CCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQ-HT----DQEIWEVLAKC-HLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~-~s----d~eI~~aL~~~-~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+|+||++.+|.+ |+++|+..... .+ ++++.++++.. ++.+ .......+||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999975 99999963211 11 22344444443 2222 1223456899999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
++++|+||+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ ||++++|++|++++.|+++++.++
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999998743 47899999999998776 999999999999999999999754
No 201
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=365.62 Aligned_cols=220 Identities=21% Similarity=0.380 Sum_probs=189.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999963 369999999999999999999999999999999999986 479999999999853 4556
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---CC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++|++++|+||+|.+|..|+++|+.... .. .++++.++++.+++.+.+... ....+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7788999999999999889999996321 11 234566778888886554321 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe---------CCEEEEe
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS---------DGKLAEY 1201 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~---------~G~vvE~ 1201 (1232)
+|||||+++|+||||||||++||.++.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999986667899999999999877 89999998 8999999
Q ss_pred cChhHHHhhcCC
Q 000904 1202 DEPMKLMKREGS 1213 (1232)
Q Consensus 1202 g~p~~Ll~~~~~ 1213 (1232)
|+++++++++..
T Consensus 241 ~~~~~~~~~~~~ 252 (264)
T PRK14243 241 DRTEKIFNSPQQ 252 (264)
T ss_pred CCHHHHHhCCCc
Confidence 999999876543
No 202
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-40 Score=383.41 Aligned_cols=204 Identities=26% Similarity=0.379 Sum_probs=178.5
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh----hccEEEEccCCCCCc-c
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL----RSRFGIIPQDPTLFN-G 1075 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~i~iVpQdP~LF~-g 1075 (1232)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++ |++++|+||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999998876554 358999999999986 5
Q ss_pred cHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000904 1076 TVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148 (1232)
Q Consensus 1076 TIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDE 1148 (1232)
|+++|+... ...+ ++++.++|+.++|.+...+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999632 1112 356778899998876655443 4799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1149 ATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1149 aTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
||++||+.+.+.+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998753 47899999999999876 99999999999999999999988765433
No 203
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-40 Score=382.05 Aligned_cols=217 Identities=24% Similarity=0.401 Sum_probs=189.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++..++. .|++++
T Consensus 19 ~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPIN 94 (377)
T ss_pred eEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999953 469999999999999999999999999999999999999999999999999987664 467899
Q ss_pred EEccCCCCCcc-cHHhccCCC-C--CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL-S--QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~-~--~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.+|.. |+++|+... . ..+ ++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999631 1 122 345678888888876554443 4799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCC
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGS 1213 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~ 1213 (1232)
|+++|++|+|||||++||..+.+.+.+.|++.. .+.|+|+||||++.+.. ||+|++|++|++++.|+|+++++++..
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~ 243 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTT 243 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCcc
Confidence 999999999999999999999999987776543 37899999999999876 999999999999999999999988776
Q ss_pred HHH
Q 000904 1214 LFG 1216 (1232)
Q Consensus 1214 ~f~ 1216 (1232)
.|-
T Consensus 244 ~~~ 246 (377)
T PRK11607 244 RYS 246 (377)
T ss_pred HHH
Confidence 553
No 204
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-39 Score=364.53 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=186.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+...++++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EccCCCC-CcccHHhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTL-FNGTVRYNLDPLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~L-F~gTIr~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+ +..|+++|+..... ..++++.++++.+++.+.... ...+||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 9999987 67899999863211 123457788888888654333 2458999999999999999
Q ss_pred c------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1138 L------RRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1138 L------~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+ .+|++|+|||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999998753 47899999999999976 9999999999999999999987
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
++
T Consensus 230 ~~ 231 (258)
T PRK13548 230 TP 231 (258)
T ss_pred Ch
Confidence 64
No 205
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-39 Score=356.77 Aligned_cols=210 Identities=24% Similarity=0.324 Sum_probs=185.6
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh----Hhhhcc
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL----HDLRSR 1062 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~LR~~ 1062 (1232)
.+.|+.++|+++ .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 467899999755 569999999999999999999999999999999999999999999999998876542 345678
Q ss_pred EEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1063 FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1063 i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
++|+||+|.+|+.|+++|+......++++.+++++.+++.+.+...|.|+++.+.....+||+|||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998644456677788999999998888889999998888899999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHH--HHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1143 ILVLDEATASIDNATDMILQK--TIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~--~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
+|||||||++||..+.+.+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999998877766 444322 3689999999999998899999999884
No 206
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-40 Score=367.95 Aligned_cols=214 Identities=22% Similarity=0.349 Sum_probs=188.3
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
-.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999963 4699999999999999999999999999999999999999999999999999988888888899
Q ss_pred EEEccCCCCCc-ccHHhccCCCC--------C---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS--------Q---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~--------~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
+|+||+|.+|. .|+++|+.... . ..+++++++++.+++.+...+ .+.+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999998774 69999986421 0 123467888888888654332 3468999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+||||++++|++|+|||||++||.++.+.+.+.|++.. .+.|||++||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998753 27899999999998877 9999999999999999999987
Q ss_pred hh
Q 000904 1209 KR 1210 (1232)
Q Consensus 1209 ~~ 1210 (1232)
..
T Consensus 233 ~~ 234 (265)
T PRK10253 233 TA 234 (265)
T ss_pred hH
Confidence 53
No 207
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=371.83 Aligned_cols=218 Identities=22% Similarity=0.330 Sum_probs=183.0
Q ss_pred cceEEEEeeEeEecCCC---CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC----C-
Q 000904 983 VGKVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK----L- 1054 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~---~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~----i- 1054 (1232)
.|.|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999996432 259999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHhhhccEEEEccCC--CCCcccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCCh
Q 000904 1055 GLHDLRSRFGIIPQDP--TLFNGTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1055 ~l~~LR~~i~iVpQdP--~LF~gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
+...+|++++|+||+| .+|..|+++|+.... .... +++.++++.+++.+. .....+.+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCH
Confidence 3567788999999998 477889999996311 1222 234556666666321 12234568999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1126 GQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1126 GQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|||||++|||||+++|++|||||||++||..+.+.+.+.|++.. .++|||+||||++.+.. ||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998754 37899999999998876 9999999999999999
Q ss_pred ChhHHHhh
Q 000904 1203 EPMKLMKR 1210 (1232)
Q Consensus 1203 ~p~~Ll~~ 1210 (1232)
++++++++
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99998754
No 208
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-40 Score=354.53 Aligned_cols=215 Identities=25% Similarity=0.387 Sum_probs=189.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCe---eCCCCChHhhhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI---DISKLGLHDLRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~---dI~~i~l~~LR~~ 1062 (1232)
|+++|++..|+. -.+++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.++|. |.+++..+ .++
T Consensus 3 i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R~ 78 (345)
T COG1118 3 IRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DRK 78 (345)
T ss_pred eeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hcc
Confidence 778888888853 45899999999999999999999999999999999999999999999999 88774443 478
Q ss_pred EEEEccCCCCCc-ccHHhccCCCC---------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1063 FGIIPQDPTLFN-GTVRYNLDPLS---------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1063 i~iVpQdP~LF~-gTIr~NLdp~~---------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
||+|+||+-||. .||.+|+...- ...+.++.+.|+.++|.+.-+..| .+||||||||+|
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 999999999884 59999997321 123456778899999987766655 479999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||...|++|+||||.++||..-.+.+++-|++.. -++|+++||||.+.+.+ ||||+||++|+|...|+|+|...
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999999999999999988743 37899999999999887 99999999999999999999999
Q ss_pred hcCCHH
Q 000904 1210 REGSLF 1215 (1232)
Q Consensus 1210 ~~~~~f 1215 (1232)
.+++.|
T Consensus 228 ~P~s~f 233 (345)
T COG1118 228 HPASRF 233 (345)
T ss_pred CCCccc
Confidence 998877
No 209
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=366.03 Aligned_cols=222 Identities=21% Similarity=0.334 Sum_probs=191.3
Q ss_pred CCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCC---
Q 000904 981 PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDIS--- 1052 (1232)
Q Consensus 981 p~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~--- 1052 (1232)
|..+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 45678999999999963 3699999999999999999999999999999999999985 7999999998874
Q ss_pred -CCChHhhhccEEEEccCCCCCcccHHhccCCC----C----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCC
Q 000904 1053 -KLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL----S----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123 (1232)
Q Consensus 1053 -~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~----~----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nL 1123 (1232)
....+.+|++++|+||+|.+|.+|+++|+... + ...++++.++++.+++.+.+. ........+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence 33456778899999999999999999999632 1 112466788888888764332 2233446789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|+|||||++|||||+++|++|+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987667899999999999976 9999999999999999
Q ss_pred ChhHHHhhc
Q 000904 1203 EPMKLMKRE 1211 (1232)
Q Consensus 1203 ~p~~Ll~~~ 1211 (1232)
+++++..++
T Consensus 243 ~~~~~~~~~ 251 (265)
T PRK14252 243 ATDTIFIKP 251 (265)
T ss_pred CHHHHHhCC
Confidence 999998654
No 210
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=361.36 Aligned_cols=213 Identities=25% Similarity=0.424 Sum_probs=182.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh-hhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i 1063 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3789999999953 46999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEccCCCCCcc-cHHhccCCCC----CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS----QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|.+|.+ |+++|+.... ..+ ++.+.+.++..++.+. ......+||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999998874 9999986431 112 2345666666666443 2334568999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||++++|++|+|||||++||..+.+.+.+.|++.. .+.|+|++||+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999998887643 47899999999988766 899999999999999999998754
No 211
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-39 Score=359.80 Aligned_cols=211 Identities=27% Similarity=0.397 Sum_probs=178.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh-hhccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD-LRSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~-LR~~i~ 1064 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..+ .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 468999999963 36999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEccCCCCCcc-cHHhccCCC-CC--CCH-HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL-SQ--HTD-QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~-~~--~sd-~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|+||+|.+|.+ |+++|+... .. ..+ +...++++..+ +++........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999976 999998631 11 112 22344444433 12222334556899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+|++|+|||||++||..+.+.+.+.|++..+ ++|+|++||+++.+.+ ||+|+++++|++++.|+++++-
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999987543 7899999999999987 9999999999999999999873
No 212
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=362.97 Aligned_cols=223 Identities=22% Similarity=0.344 Sum_probs=190.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.|+++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999953 4699999999999999999999999999999999999763 489999999999876 456
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---C-C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---Q-H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~-~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+.|++++|+||+|.+|.+|+++|+.... . . .++++.++++.+++.+.+.. .....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD-------RLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHH-------HhhcChhhCCHHHHH
Confidence 7788999999999999999999997321 1 1 13356777887777543322 234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++.+|++++|||||++||.++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999986667899999999999976 9999999999999999999998
Q ss_pred hhcCCHHH
Q 000904 1209 KREGSLFG 1216 (1232)
Q Consensus 1209 ~~~~~~f~ 1216 (1232)
+++...+.
T Consensus 237 ~~~~~~~~ 244 (253)
T PRK14261 237 ENPHEELT 244 (253)
T ss_pred hCCCcHHH
Confidence 76543333
No 213
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=368.85 Aligned_cols=212 Identities=27% Similarity=0.380 Sum_probs=182.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC--CCChHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS--KLGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~--~i~l~~LR~~i 1063 (1232)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 33456778899
Q ss_pred EEEccCCC--CCcccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPT--LFNGTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~--LF~gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|. ++..|+.+|+... ...+ .+++.++++.+++.+.... ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHHH
Confidence 99999985 6778899998531 1122 2345678888887654322 3458999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||+.+|+||||||||++||..+...+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|++++++++
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998753 47899999999999976 999999999999999999998764
No 214
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.2e-39 Score=373.64 Aligned_cols=212 Identities=24% Similarity=0.369 Sum_probs=182.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998764 356788999
Q ss_pred EEccCCCCCc-ccHHhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||+|.++. .|+++|+..+. ..++ +++.++++.+++.+.... ...+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV-----------RVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------chhhCCHHHHHHHHHHHH
Confidence 9999998884 69999986221 1232 235566777777543222 235799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+++|++|+|||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998753 47899999999999987 999999999999999999999754
No 215
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=364.30 Aligned_cols=222 Identities=22% Similarity=0.375 Sum_probs=190.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCC--CCh
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDISK--LGL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~--i~l 1056 (1232)
+.++++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999953 36999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HhhhccEEEEccCCCCCcccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..+|+.++|+||++.+|..|+++|+... +..+ ++++.++++.+++.+++.. .....+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 5778899999999999999999999631 1112 3456778888888654432 22345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeC-----CEEEE
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISD-----GKLAE 1200 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~-----G~vvE 1200 (1232)
||++|||||+++|++|+|||||++||.++...+.+.|++. ..++|+|+||||++.+.+ ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 9999999999999999999999999999999999999873 247999999999999987 899999999 99999
Q ss_pred ecChhHHHhhcCCH
Q 000904 1201 YDEPMKLMKREGSL 1214 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~ 1214 (1232)
.|+|+++++++...
T Consensus 237 ~~~~~~~~~~~~~~ 250 (261)
T PRK14258 237 FGLTKKIFNSPHDS 250 (261)
T ss_pred eCCHHHHHhCCCCH
Confidence 99999998876553
No 216
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-39 Score=360.67 Aligned_cols=211 Identities=24% Similarity=0.359 Sum_probs=184.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 468999999963 369999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EccCCCCCcc-cHHhccCCC-C------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL-S------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~-~------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+... . ...++++.++++..++.+.....+ .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999965 999998621 1 112456778888888876655443 47999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
+++|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999987543 7899999999999877 8999999999999999999998654
No 217
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-39 Score=368.21 Aligned_cols=213 Identities=25% Similarity=0.384 Sum_probs=184.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC--CChHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK--LGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i 1063 (1232)
++++|++++|+. .+++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|+++
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 689999999963 3469999999999999999999999999999999999999999999999999852 3345678999
Q ss_pred EEEccCC--CCCcccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDP--TLFNGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP--~LF~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+| .+|..|+++|+.... ..+ .+++.++++.+++.+.... .+.+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 578899999995210 122 2457788888888654322 2357999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||++++|++|||||||++||..+...+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998754 37899999999999986 999999999999999999998764
No 218
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.8e-39 Score=357.83 Aligned_cols=206 Identities=23% Similarity=0.346 Sum_probs=178.3
Q ss_pred eEEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---h
Q 000904 985 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---L 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---L 1059 (1232)
.++++|++++|+.+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999996432 25999999999999999999999999999999999999999999999999998877654 3
Q ss_pred -hccEEEEccCCCCCcc-cHHhccCC---CCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 -RSRFGIIPQDPTLFNG-TVRYNLDP---LSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 -R~~i~iVpQdP~LF~g-TIr~NLdp---~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+++++|+||+|.+|.+ |+++|+.. +... ..+++.++++.+++.+.....| .+||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999998875 99999853 1111 2356788899988876554433 4799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
++|||||+++|++|||||||++||.++.+.+.+.|++.. .+.|||+|||+++.+..||++++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998753 27899999999999988999999999999874
No 219
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=365.02 Aligned_cols=219 Identities=21% Similarity=0.361 Sum_probs=188.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||+++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 5999999999963 4699999999999999999999999999999999999874 59999999999864 3445
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCC---C---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLS---Q---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
.+|++++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+.+.. .....+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHHH
Confidence 6788999999999999889999996321 1 124456778888888654432 12344578999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe---------CCEEEEe
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS---------DGKLAEY 1201 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~---------~G~vvE~ 1201 (1232)
+|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.+ ||++++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987667899999999999976 99999997 8999999
Q ss_pred cChhHHHhhcC
Q 000904 1202 DEPMKLMKREG 1212 (1232)
Q Consensus 1202 g~p~~Ll~~~~ 1212 (1232)
|++++++.++.
T Consensus 251 g~~~~~~~~~~ 261 (274)
T PRK14265 251 SPTEQMFGSPQ 261 (274)
T ss_pred CCHHHHHhCCC
Confidence 99999987654
No 220
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-39 Score=354.13 Aligned_cols=200 Identities=26% Similarity=0.377 Sum_probs=174.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|++ .. .|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 478999999963 22 39999999999999999999999999999999999999999999999987653 3678999
Q ss_pred EccCCCCCcc-cHHhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+..... ..++++.++++.+++.+.....| .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 99999963211 13456888999998876655443 47999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999998753 37899999999999977 9999999999998764
No 221
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=362.43 Aligned_cols=203 Identities=27% Similarity=0.367 Sum_probs=178.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 4999999999963 46999999999999999999999999999999999999999999999998763 5678899
Q ss_pred EEccCCCCCc-ccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
|+||+|.+|. .|+++|+... ....++++.++++.+++.+.... .+.+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 6999999742 22235678889999888664433 345899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPM 1205 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~ 1205 (1232)
+|||||||++||..+...+.+.|++.. .++|||+||||++.+.+ ||+|++|++|++++.++.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998753 37899999999999876 9999999999999987654
No 222
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=363.84 Aligned_cols=219 Identities=24% Similarity=0.407 Sum_probs=186.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999854 4456
Q ss_pred hhhccEEEEccCCCCCc-ccHHhccCCC----CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDPTLFN-GTVRYNLDPL----SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~-gTIr~NLdp~----~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|+.++|+||++.+|. .|+++|+... +.. .++++.++++.+++.+.+.. .....+.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 77889999999999886 5999998521 111 13456778888887543321 12334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe------CCEEEEe
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS------DGKLAEY 1201 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~------~G~vvE~ 1201 (1232)
||++||||++++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999986567899999999999876 99999996 8999999
Q ss_pred cChhHHHhhcC
Q 000904 1202 DEPMKLMKREG 1212 (1232)
Q Consensus 1202 g~p~~Ll~~~~ 1212 (1232)
|+++++++++.
T Consensus 235 ~~~~~~~~~~~ 245 (258)
T PRK14241 235 DDTEKIFSNPT 245 (258)
T ss_pred CCHHHHHhCcC
Confidence 99999987643
No 223
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-39 Score=374.61 Aligned_cols=225 Identities=19% Similarity=0.291 Sum_probs=187.8
Q ss_pred eEEEEeeEeEecC--CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc----CCccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRP--DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE----PAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~--~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e----p~~G~I~IDG~dI~~i~l~~ 1058 (1232)
-++++|++++|.. +...+++||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||+|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999953 22469999999999999999999999999999999999996 58999999999999888766
Q ss_pred hh----ccEEEEccCCCC--C-cccHHhccC-C---C---CC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccC
Q 000904 1059 LR----SRFGIIPQDPTL--F-NGTVRYNLD-P---L---SQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118 (1232)
Q Consensus 1059 LR----~~i~iVpQdP~L--F-~gTIr~NLd-p---~---~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e 1118 (1232)
++ ++|+||||+|.. + ..||.+|+. + . +. ..++++.++|+.++|.+.... ...
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--------MRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--------HhC
Confidence 53 479999999963 3 347887773 1 1 10 113467889999999743211 122
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeC
Q 000904 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISD 1195 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~ 1195 (1232)
.+.+||||||||++|||||+.+|+|||+||||++||..+...+.+.|++.. .+.|+|+||||++.+.+ ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 346899999999999999999999999999999999999999999998754 37899999999999977 999999999
Q ss_pred CEEEEecChhHHHhhcCCHHHH
Q 000904 1196 GKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1196 G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|+|+|.|+++++++++...|.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999999876666655
No 224
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.8e-39 Score=366.00 Aligned_cols=227 Identities=25% Similarity=0.339 Sum_probs=188.3
Q ss_pred eEEEEeeEeEecC-------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH
Q 000904 985 KVDICDLQIRYRP-------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~-------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1057 (1232)
.|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 3899999999952 124699999999999999999999999999999999999999999999999999766666
Q ss_pred hhhccEEEEccCCC--CCcc-cHHhccCC---CC-----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1058 DLRSRFGIIPQDPT--LFNG-TVRYNLDP---LS-----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~--LF~g-TIr~NLdp---~~-----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
..+++++|+||+|. ++.. |+.+|+.. .. ...++++.++++.+++.+..... ...+||+|
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY----------YPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc----------CchhcCHH
Confidence 66778999999985 4433 77777641 11 11235678899999984322211 23579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++|||||+++|+||||||||++||+++.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998753 37899999999999987 99999999999999999
Q ss_pred hhHHHhhcC-CHHHHHHHH
Q 000904 1204 PMKLMKREG-SLFGQLVRE 1221 (1232)
Q Consensus 1204 p~~Ll~~~~-~~f~~l~~~ 1221 (1232)
++++.+++. ..+++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 234 TADVLASPLHELTKRLIAG 252 (267)
T ss_pred HHHHhcCCCCHHHHHHHHh
Confidence 999987653 345566654
No 225
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.3e-39 Score=343.09 Aligned_cols=172 Identities=37% Similarity=0.619 Sum_probs=161.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+.+..++++++||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+.+.+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 46899999996443469999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
++|+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1146 LDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
|||||++||..+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998753 47899999999999988999999999974
No 226
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.9e-40 Score=356.91 Aligned_cols=197 Identities=28% Similarity=0.402 Sum_probs=169.2
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36799999953 46999999999999999999999999999999999999999999999998764 467899999
Q ss_pred ccCCCC---CcccHHhccCCCCC-----------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1067 PQDPTL---FNGTVRYNLDPLSQ-----------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1067 pQdP~L---F~gTIr~NLdp~~~-----------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
||+|.+ |..|+++|+..... ..++++.++++.+++.+..... ..+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHH
Confidence 999976 66899999853211 1234678889998887654432 3579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|||||+++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998753 57899999999999977 8999999886 55543
No 227
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=364.53 Aligned_cols=219 Identities=27% Similarity=0.379 Sum_probs=188.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCC-hHh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKLG-LHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~-l~~ 1058 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999998763 456
Q ss_pred hhccEEEEccCCCCCcccHHhccCCC----CCCCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPL----SQHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~----~~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+|++++|+||+|.+|..|+++|+... ...++++ +.++++.+++.+... +.....+.+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK-------DRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhCCcccCCHHHHHH
Confidence 78899999999999999999999631 1134433 345667777654321 22334567899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.+ |||+++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999986556899999999999877 99999999999999999999987
Q ss_pred hcC
Q 000904 1210 REG 1212 (1232)
Q Consensus 1210 ~~~ 1212 (1232)
.+.
T Consensus 252 ~~~ 254 (276)
T PRK14271 252 SPK 254 (276)
T ss_pred CcC
Confidence 643
No 228
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-39 Score=324.92 Aligned_cols=210 Identities=24% Similarity=0.368 Sum_probs=184.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|.+++|.++|.. .+ =..+++|++||++||+|+||||||||++++.|+..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999963 33 256899999999999999999999999999999999999999999999877664 467999
Q ss_pred EccCCCCCcc-cHHhccCCCC-------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS-------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~-------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
++||..||.. ||++|+...- ....+.+..++.++|+.++..++|. .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999965 9999997321 1245679999999999999999985 6999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++-+.. +|+++++++|||++.|+.++++..++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999888888776533 47899999999999877 89999999999999999999997654
No 229
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-39 Score=360.57 Aligned_cols=219 Identities=23% Similarity=0.366 Sum_probs=188.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCC-CCChHh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDIS-KLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~-~i~l~~ 1058 (1232)
.++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4789999999963 4699999999999999999999999999999999999996 5999999999986 456677
Q ss_pred hhccEEEEccCCCCCcccHHhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1059 LRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+|+.++|+||+|.+|..|+++|+... .. .. ++++.++++.+++.+.+. ......+.+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 88999999999999999999999632 11 11 234567788787765432 12233456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++|||||+.+|++|||||||++||..+...+.+.|++..++.|||+|||+++.+.+ ||++++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987667899999999999887 99999999999999999999876
Q ss_pred hcC
Q 000904 1210 REG 1212 (1232)
Q Consensus 1210 ~~~ 1212 (1232)
++.
T Consensus 234 ~~~ 236 (249)
T PRK14253 234 NPK 236 (249)
T ss_pred CCC
Confidence 543
No 230
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-39 Score=362.25 Aligned_cols=220 Identities=20% Similarity=0.298 Sum_probs=190.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--ChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKL--GLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i--~l~ 1057 (1232)
.+.+++.+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.|+... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3788999999963 4699999999999999999999999999999999999987 799999999998653 444
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCCC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLSQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
.+|++++|+||+|.+|..|+++|+..... ..++++.++++.+++.+.+... ..+.+.+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 67889999999999999999999964211 1235688899999886655432 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEe--------CCEEEEec
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAIS--------DGKLAEYD 1202 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~--------~G~vvE~g 1202 (1232)
+|||||+++|++|+|||||++||..+...+.+.|++..+++|+|+|||+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999987667899999999999877 99999996 89999999
Q ss_pred ChhHHHhhcCC
Q 000904 1203 EPMKLMKREGS 1213 (1232)
Q Consensus 1203 ~p~~Ll~~~~~ 1213 (1232)
+++++++++..
T Consensus 239 ~~~~~~~~~~~ 249 (261)
T PRK14263 239 PTAQIFQNPRE 249 (261)
T ss_pred CHHHHHhCCCc
Confidence 99999876543
No 231
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=366.45 Aligned_cols=223 Identities=22% Similarity=0.320 Sum_probs=188.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCCC--Ch
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISKL--GL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~l 1056 (1232)
..++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.++... ..
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35899999999953 359999999999999999999999999999999999865 4999999999998653 33
Q ss_pred HhhhccEEEEccCCCCCcccHHhccCCCC---CC-C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLDPLS---QH-T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLdp~~---~~-s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
..+|++++|+||+|.+|.+|+++|+.... .. + ++++.++++.+++.+.+.. .....+..||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHHHH
Confidence 45788999999999999899999996311 11 1 2346678888877543221 12334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++|||||+++|++|||||||++||.++.+.+.+.|++..+++|||++|||++.+.+ ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999986567899999999999977 999999999999999999999
Q ss_pred HhhcCCHH
Q 000904 1208 MKREGSLF 1215 (1232)
Q Consensus 1208 l~~~~~~f 1215 (1232)
.+++...+
T Consensus 269 ~~~~~~~~ 276 (286)
T PRK14275 269 FTNPKDRM 276 (286)
T ss_pred HhCCCcHH
Confidence 87655433
No 232
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=363.04 Aligned_cols=213 Identities=23% Similarity=0.340 Sum_probs=182.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1063 (1232)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999953 469999999999999999999999999999999999999999999999999988876665 4569
Q ss_pred EEEccCCCCCcc-cHHhccCCCCC-------------------C---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQ-------------------H---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~-------------------~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
+|+||+|.+|.+ |+++|+..... . ..+++.++++..++.+. ....+
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-----------ANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-----------hhCCh
Confidence 999999999976 99999863110 0 01234555666655433 33445
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
.+||||||||++||||++.+|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 68999999999999999999999999999999999999999999987532 7899999999999977 99999999999
Q ss_pred EEEecChhHHHhh
Q 000904 1198 LAEYDEPMKLMKR 1210 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~ 1210 (1232)
+++.|+++++.++
T Consensus 232 i~~~~~~~~~~~~ 244 (255)
T PRK11300 232 PLANGTPEEIRNN 244 (255)
T ss_pred EEecCCHHHHhhC
Confidence 9999999998754
No 233
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=361.45 Aligned_cols=222 Identities=22% Similarity=0.346 Sum_probs=188.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--P---AGGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p---~~G~I~IDG~dI~~--i~l~ 1057 (1232)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999963 469999999999999999999999999999999999975 4 58999999999864 3455
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCC---CC-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPL---SQ-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~---~~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
.+|++++|+||+|.+|..|+++|+... .. .. ++++.++++.+++.+.+. ......+.+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999998621 11 11 345667778877754332 1233455789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|++|||||||++||..+.+.+.+.|++..++.|+|+||||++.+.+ ||+|++|++|++++.|++.+++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999986557899999999999976 9999999999999999999998
Q ss_pred hhcCCHH
Q 000904 1209 KREGSLF 1215 (1232)
Q Consensus 1209 ~~~~~~f 1215 (1232)
.++...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14255 236 LNPKEKE 242 (252)
T ss_pred cCCCChH
Confidence 7655443
No 234
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.3e-39 Score=377.09 Aligned_cols=205 Identities=23% Similarity=0.280 Sum_probs=177.0
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCe----eCCCCChHhh---h-ccEEEEccCCC
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI----DISKLGLHDL---R-SRFGIIPQDPT 1071 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~----dI~~i~l~~L---R-~~i~iVpQdP~ 1071 (1232)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||. |+.+.+.+++ | ++++||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 6777765544 3 58999999999
Q ss_pred CCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1072 LFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1072 LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+|. .|+++|+... ...+ .+++.++++.++|.+..... +.+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 6999999621 1122 24567889999887654443 347999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
|+|||||++||+.+...+++.|++..+ ++|+|+||||++.+.+ ||||++|++|++++.|+|++++.++...|
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~ 260 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHH
Confidence 999999999999999999999987543 7899999999999866 99999999999999999999997764433
No 235
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-39 Score=360.74 Aligned_cols=222 Identities=25% Similarity=0.343 Sum_probs=185.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCC--CChH
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA-----GGKILVDGIDISK--LGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~-----~G~I~IDG~dI~~--i~l~ 1057 (1232)
-++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.+++. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999975 3445
Q ss_pred hhhccEEEEccCCCCCc-ccHHhccCCC---CC-CCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1058 DLRSRFGIIPQDPTLFN-GTVRYNLDPL---SQ-HTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~-gTIr~NLdp~---~~-~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
.+|++++|+||+|.+|. .|+++|+... .. ..+++ +.+.++..++.+.+. ..++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK---DRLK----TPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh---hhhc----CCcccCCHHHH
Confidence 77889999999999887 4999999521 11 12332 334455565543321 1222 34568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
||++|||||+++|++|+|||||++||..+.+.+.+.|++..+++|+|++||+++.+.+ ||+|++|++|++++.|+|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999986567999999999999987 899999999999999999999
Q ss_pred HhhcCCHH
Q 000904 1208 MKREGSLF 1215 (1232)
Q Consensus 1208 l~~~~~~f 1215 (1232)
++++...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 88765544
No 236
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.6e-39 Score=355.53 Aligned_cols=207 Identities=25% Similarity=0.402 Sum_probs=172.7
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh---Hhhh
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL---HDLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l---~~LR 1060 (1232)
|+++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996321 269999999999999999999999999999999999999999999999999988763 5678
Q ss_pred ccEEEEccCCC--CC-cccHHhccCC----CCC-CCHHH---H-HHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1061 SRFGIIPQDPT--LF-NGTVRYNLDP----LSQ-HTDQE---I-WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1061 ~~i~iVpQdP~--LF-~gTIr~NLdp----~~~-~sd~e---I-~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
++++|+||+|. ++ ..|+++|+.. .+. ..+++ . .++++..++.+ ......+.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 89999999993 44 5799999852 111 11121 1 35666666632 122334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||++|||||+++|++|+|||||++||.++.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999987543 7899999999999985 9999999999998764
No 237
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-39 Score=355.16 Aligned_cols=208 Identities=24% Similarity=0.378 Sum_probs=182.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. . ..|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 689999999963 2 249999999999999999999999999999999999999999999999887644 3578999
Q ss_pred EccCCCCCcc-cHHhccCC-CCC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDP-LSQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp-~~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+.. +.. ..++++.++++.+++.+.....| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999975 99999963 211 12456889999999877665544 37999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+++|++|||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999987533 7899999999999876 899999999999999999999865
No 238
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.8e-39 Score=375.40 Aligned_cols=212 Identities=25% Similarity=0.420 Sum_probs=183.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+.+.+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999997654 56788999
Q ss_pred EEccCCCCC-cccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLF-NGTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF-~gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||++.++ ..|+++|+..++ ..+ .+.+.++++.+++.+.. +.. ..+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-------~~~----~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-------DAR----VSDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-------CCC----hhhCCHHHHHHHHHHHH
Confidence 999999886 569999996322 122 23355677777775432 222 34799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+.+|++|||||||++||+.+...+.+.|++.. .+.|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998853 47899999999999987 999999999999999999999764
No 239
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.5e-39 Score=357.40 Aligned_cols=210 Identities=25% Similarity=0.398 Sum_probs=183.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 468999999963 469999999999999999999999999999999999999999999999999986653 4788999
Q ss_pred EccCCCCCcc-cHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+..... ..+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999975 9999996321 11 234577888888886554432 357999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+++|++++|||||++||.++.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999987533 6899999999999877 999999999999999999999764
No 240
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.4e-39 Score=353.27 Aligned_cols=203 Identities=25% Similarity=0.374 Sum_probs=174.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh---hhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD---LRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~---LR~~ 1062 (1232)
|+++|++++|++ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.++ +|++
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 689999999943 246999999999999999999999999999999999999999999999999998776543 6889
Q ss_pred EEEEccCCCC-CcccHHhccCCC---CCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1063 FGIIPQDPTL-FNGTVRYNLDPL---SQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1063 i~iVpQdP~L-F~gTIr~NLdp~---~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+||+|.+ +..|+++|+... ...++ +++.++++..++.+...+ ...+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHH
Confidence 9999999986 467999999632 12222 346678888887655433 3358999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
||++++|++|||||||++||.++.+.+.+.|++.. ++.|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998753 46899999999999987 89999999999853
No 241
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.6e-39 Score=362.75 Aligned_cols=211 Identities=24% Similarity=0.377 Sum_probs=185.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 688999999953 469999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EccCCC-CCcccHHhccCCCC----C-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1066 IPQDPT-LFNGTVRYNLDPLS----Q-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1066 VpQdP~-LF~gTIr~NLdp~~----~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
+||+|. .+..|+++|+.... . ..++++.++++.+++.+.... .+.+||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 999995 55789999995321 0 123457888888888654332 345799999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||++.+|+++||||||++||..+...+.+.|++.. .+.|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998753 36899999999999966 99999999999999999999865
No 242
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.8e-39 Score=370.16 Aligned_cols=211 Identities=24% Similarity=0.372 Sum_probs=186.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++ +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+ ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 44678899999
Q ss_pred EccCCCCCcc-cHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+.... ... ++++.++++.+++.+...+ ...+||+|||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-----------KIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999876 9999996321 112 3457778888887655332 2457999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+++|++|+|||||++||+.+.+.+.+.|++..++.|||++||+++.+.+ ||||++|++|++++.|+++++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999987668999999999999988 999999999999999999998754
No 243
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-39 Score=353.98 Aligned_cols=200 Identities=28% Similarity=0.437 Sum_probs=172.6
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|.. +++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 468999999953 469999999999999999999999999999999999999999999999988753 46789999
Q ss_pred EccCCCCCcc-cHHhccCCCC---CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS---QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~---~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+.... ...+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999985321 11 13456777887777654433 3457999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|+|||||++||.++.+.+.+.|++.. +++|||+||||++.+.+ ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998753 47899999999999877 9999999999998864
No 244
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-39 Score=357.40 Aligned_cols=210 Identities=27% Similarity=0.424 Sum_probs=184.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|.. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .|++++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999963 38999999999999999999999999999999999999999999999999987654 3689999
Q ss_pred EccCCCCCc-ccHHhccCCC---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||++.+|. .|+++|+... ... .++++.++++.+++.+...+.+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999885 7999999621 111 2345778888888876655443 47999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
+++|++|+|||||++||..+.+.+.+.|++... ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999987533 7899999999999887 9999999999999999999998754
No 245
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=369.04 Aligned_cols=220 Identities=25% Similarity=0.433 Sum_probs=189.2
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCCC--C
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-----PAGGKILVDGIDISKL--G 1055 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-----p~~G~I~IDG~dI~~i--~ 1055 (1232)
...|+++|++++|.. .++|+++||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 346999999999963 469999999999999999999999999999999999986 6899999999999753 4
Q ss_pred hHhhhccEEEEccCCCCCcccHHhccCCCC----------------C----CCHHHHHHHHHHcCCcHHHHhhccCCccc
Q 000904 1056 LHDLRSRFGIIPQDPTLFNGTVRYNLDPLS----------------Q----HTDQEIWEVLAKCHLGEAVREKENGLDSL 1115 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~----------------~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~ 1115 (1232)
...+|++++|+||+|.+|.+|+++|+.... . ..++++.++++.+++.+.+. ..
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 567889999999999999999999996210 0 11345778888888754332 23
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE-EEE
Q 000904 1116 VVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV-LAI 1193 (1232)
Q Consensus 1116 v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV-lVL 1193 (1232)
....+.+||||||||++|||||+++|+||||||||++||..+...+.+.|++..++.|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34556799999999999999999999999999999999999999999999987667899999999999887 9997 567
Q ss_pred eCCEEEEecChhHHHhhc
Q 000904 1194 SDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1194 ~~G~vvE~g~p~~Ll~~~ 1211 (1232)
++|++++.|+++++++++
T Consensus 274 ~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 274 TGGELVEYDDTDKIFENP 291 (305)
T ss_pred cCCEEEEeCCHHHHHhCc
Confidence 999999999999998654
No 246
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=9.6e-39 Score=358.61 Aligned_cols=221 Identities=22% Similarity=0.349 Sum_probs=183.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee-----CCCCChHh-
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID-----ISKLGLHD- 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~l~~- 1058 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+..+
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999953 469999999999999999999999999999999999999999999999999 87776554
Q ss_pred ---hhccEEEEccCCC--CC-cccHHhccC----CCCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1059 ---LRSRFGIIPQDPT--LF-NGTVRYNLD----PLSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1059 ---LR~~i~iVpQdP~--LF-~gTIr~NLd----p~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
.|+.++|+||+|. ++ ..|+++|+. .+... .++++.++++.+++.+ ......+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999994 33 347777763 12211 1334556666666642 12334567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+++|+||+|||||++||.++.+.+.+.|++..+ +.|||+|||+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987533 7899999999999986 999999999999999
Q ss_pred cChhHHHhhcCCHHHH
Q 000904 1202 DEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~ 1217 (1232)
|+|+++..++...|.+
T Consensus 234 ~~~~~~~~~~~~~~~~ 249 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQ 249 (258)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 9999998765544543
No 247
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-39 Score=354.77 Aligned_cols=227 Identities=24% Similarity=0.391 Sum_probs=186.4
Q ss_pred EEEEeeEeEecCCC--CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc-C----CccEEEECCeeCCCCChHh
Q 000904 986 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE-P----AGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~--~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e-p----~~G~I~IDG~dI~~i~l~~ 1058 (1232)
++++|+++.|..+. ..+++||||++++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+-+++-++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996432 368999999999999999999999999999999999998 4 5799999999999999765
Q ss_pred h---h-ccEEEEccCCC-CCcc--cHHhcc----CCCCCC-----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1059 L---R-SRFGIIPQDPT-LFNG--TVRYNL----DPLSQH-----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1059 L---R-~~i~iVpQdP~-LF~g--TIr~NL----dp~~~~-----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
+ | ++|++|||||. -|+. ||.+-+ ..-... ..+++.++|+.+++.+--+.+ ..-+++
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~--------~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL--------KSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH--------hhCCcc
Confidence 3 3 58999999994 2222 333222 110111 134578889999987542221 223578
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
||||||||+.||-||+.+|++||.||||++||..+.+.|.+.|++.. .+.|+|+||||+..+.. ||||+||.+|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999988744 48999999999999988 9999999999999
Q ss_pred EecChhHHHhhcCCHHHHHHH
Q 000904 1200 EYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
|.|+.+++++++...|.+..-
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999999887766543
No 248
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.5e-39 Score=354.62 Aligned_cols=209 Identities=24% Similarity=0.311 Sum_probs=180.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|.. .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCCcccHHhccCCC----CC-CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1065 IIPQDPTLFNGTVRYNLDPL----SQ-HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLdp~----~~-~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|+||+|.+|+.|+++|+... +. ..++++.++++.+++.+... ...+.+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTIL----------TKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHh----------cCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999998631 11 13445677888887753221 23456899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEe-CCEEEEecChh
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAIS-DGKLAEYDEPM 1205 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~-~G~vvE~g~p~ 1205 (1232)
+|++|||||||++||..+.+.+.+.|++.. .++|||+|||+++.+..||++++|+ ++..++.|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998753 3789999999999998899999995 55556667764
No 249
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.4e-39 Score=350.91 Aligned_cols=200 Identities=23% Similarity=0.383 Sum_probs=175.0
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+. .++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+.+ ..|++++|+
T Consensus 2 ~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 2 ALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred eEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 68999999952 568999999999999999999999999999999999999999999999987643 467889999
Q ss_pred ccCCCCCcc-cHHhccCC-CC---C---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1067 PQDPTLFNG-TVRYNLDP-LS---Q---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1067 pQdP~LF~g-TIr~NLdp-~~---~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
||+|.+|.+ |+++|+.. +. . ..++++.++++.+++.+...+.| .+||+|||||++||||++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCLV 144 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999998874 99999852 21 1 13456788999998876654443 479999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
++|++++|||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999998754 27899999999999876 99999999999999875
No 250
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.7e-39 Score=357.98 Aligned_cols=224 Identities=21% Similarity=0.317 Sum_probs=185.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC----CccEEEECCeeCCCCChHhhh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP----AGGKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~LR 1060 (1232)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..+
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 2 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred ccEEEEccCCC-CCc--ccHHhccCC----CC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1061 SRFGIIPQDPT-LFN--GTVRYNLDP----LS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1061 ~~i~iVpQdP~-LF~--gTIr~NLdp----~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
+.++|+||+|. .|. .|+.+|+.. .+ ...+++++++++.+++.+.. +.+...+.+||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHHH
Confidence 67999999995 443 477666521 22 23456788999998886521 1223345689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||+++|+||||||||++||..+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+++++++
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999998753 27899999999999976 99999999999999999999987
Q ss_pred hcCC-HHHHHHHH
Q 000904 1210 REGS-LFGQLVRE 1221 (1232)
Q Consensus 1210 ~~~~-~f~~l~~~ 1221 (1232)
++.. .++.++..
T Consensus 231 ~~~~~~~~~~~~~ 243 (254)
T PRK10418 231 APKHAVTRSLVSA 243 (254)
T ss_pred CCCCHHHHHHHHh
Confidence 6554 45555543
No 251
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.5e-39 Score=352.97 Aligned_cols=200 Identities=27% Similarity=0.442 Sum_probs=172.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC--CChHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK--LGLHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i 1063 (1232)
++++|++++|+. .++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .....+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999963 469999999999999999999999999999999999999999999999999853 3456778899
Q ss_pred EEEccCCCCCc-ccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
+|+||+|.+|. .|+++|+... ...+ ++++.++++.+++.+.... ...+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHHH
Confidence 99999999886 6999998632 1222 2346677777777654433 3358999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
||++++|++|||||||++||.++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999753 47899999999999976 999999999975
No 252
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-39 Score=357.78 Aligned_cols=223 Identities=27% Similarity=0.376 Sum_probs=188.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC------eeCCCCChHh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG------IDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG------~dI~~i~l~~ 1058 (1232)
.++++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++| .|+.+.+..+
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4899999999953 4699999999999999999999999999999999999999986666554 6777777778
Q ss_pred hhccEEEEccCCCCCcc-cHHhccCCC----CCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDPTLFNG-TVRYNLDPL----SQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~g-TIr~NLdp~----~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|++++|+||+|.+|.+ |+++|+... +...+ +++.++++..++.+.+.. .....+..||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHHH
Confidence 89999999999999875 999999631 11122 235677888887643311 122345689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++||||++++|++|+|||||++||..+...+.+.|++...++|||++||+++.+.+ ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999965 9999999999999999999998
Q ss_pred hhcCCHHH
Q 000904 1209 KREGSLFG 1216 (1232)
Q Consensus 1209 ~~~~~~f~ 1216 (1232)
+++...+.
T Consensus 241 ~~~~~~~~ 248 (257)
T PRK14246 241 TSPKNELT 248 (257)
T ss_pred hCCCcHHH
Confidence 77654443
No 253
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-37 Score=335.19 Aligned_cols=459 Identities=21% Similarity=0.270 Sum_probs=319.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000904 719 TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNLG 798 (1232)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l~ 798 (1232)
.+...........+|.+...+++.++.++++.+|..-+++...++++.++.+|+..+... ...+....++.+..++.++
T Consensus 62 ~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa~il~l~s~a 140 (546)
T COG4615 62 MVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQAIILTLGSAA 140 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHHHHHHHHHHHH
Confidence 334445566677889999999999999999999999999999999999999999988732 2334446777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhcC
Q 000904 799 VLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNA 878 (1232)
Q Consensus 799 v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~~ 878 (1232)
..++.+|+.+.+....+++..+.+...+...-+-.+...++...+.++.+..+.|.+..+......+....+. ...+.
T Consensus 141 YLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~--~~~~a 218 (546)
T COG4615 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNL--YIPDA 218 (546)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhh--cCcch
Confidence 9999999987766555555444332222111111111122234577788888889888877665443332221 11111
Q ss_pred CchH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 879 SPFF-QTF-------AANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANY 950 (1232)
Q Consensus 879 ~~~~-~~~-------~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~ 950 (1232)
+.+. +.. .+..|-...+-.+... + +.+.+. .+--+...+.......+-+..++.+++.....+..+
T Consensus 219 ~~~r~~~~~~n~f~~la~~~~ni~l~~lIGl----v-f~lal~-~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~A 292 (546)
T COG4615 219 QEYRHHIIRANTFHLLAVNWSNIMLLGLIGL----V-FWLALS-LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTA 292 (546)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH----H-HHHHHh-hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Confidence 1111 111 1223322221111111 1 001111 111111111111122234567777777777788888
Q ss_pred HHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHH
Q 000904 951 IISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLI 1030 (1232)
Q Consensus 951 ~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl 1030 (1232)
.++..++.++...|..+. -....+.|+|. .|+++||.|.|.++. .-+..||++|++||.|-|+|.|||||||++
T Consensus 293 qvA~~kiakle~~~~~a~--~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~ 366 (546)
T COG4615 293 QVAFNKIAKLELAPYKAD--FPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLA 366 (546)
T ss_pred HHHHHHHHHhhcCCcccc--CCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHH
Confidence 888899888765322111 11222334454 599999999997653 457889999999999999999999999999
Q ss_pred HHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhcc
Q 000904 1031 GALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKEN 1110 (1232)
Q Consensus 1031 ~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~ 1110 (1232)
++|.|++.|++|+|++||.+++.-++++.|+-++-|+-|..||+.++- |-+..+.+.|..-|++..+.....-..+
T Consensus 367 ~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~LqrLel~~ktsl~d~ 442 (546)
T COG4615 367 MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWLQRLELAHKTSLNDG 442 (546)
T ss_pred HHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHHHHHHHhhhhcccCC
Confidence 999999999999999999999999999999999999999999987652 3344677888888877766554432211
Q ss_pred CCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhhcC
Q 000904 1111 GLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMDCT 1188 (1232)
Q Consensus 1111 gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~~D 1188 (1232)
.+ ....||-|||.|+++--|++.+.+|+++||=-+..|+.-++...+.+--. ..|+||+.||||-+.-..+|
T Consensus 443 ~f------s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~AD 516 (546)
T COG4615 443 RF------SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHAD 516 (546)
T ss_pred cc------cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHH
Confidence 11 12468999999999999999999999999999999999988877665332 25899999999999999999
Q ss_pred eEEEEeCCEEEEec
Q 000904 1189 MVLAISDGKLAEYD 1202 (1232)
Q Consensus 1189 rVlVL~~G~vvE~g 1202 (1232)
|++.|++|+++|..
T Consensus 517 rll~~~~G~~~e~t 530 (546)
T COG4615 517 RLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHhcCceeecc
Confidence 99999999999853
No 254
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-39 Score=373.13 Aligned_cols=213 Identities=23% Similarity=0.341 Sum_probs=184.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChHhhhc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLHDLRS 1061 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~ 1061 (1232)
+++ |++++|.. . .+ |+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... .....|+
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 566 89999953 2 23 99999999999999999999999999999999999999999999998653 2445678
Q ss_pred cEEEEccCCCCCc-ccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1062 RFGIIPQDPTLFN-GTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~-gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+++|+||++.+|. .|+++|+... ....++++.++++.+++.+..... +.+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHHHHHc
Confidence 9999999999986 5999999732 233456788999999887655443 35799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCH
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSL 1214 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~ 1214 (1232)
+|++|+|||||++||..+.+.+.+.|++..+ +.|+|+||||++.+.. ||+|++|++|++++.|+|++++.++...
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~ 223 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMR 223 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchh
Confidence 9999999999999999999999999987543 6899999999998877 9999999999999999999999887543
No 255
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.1e-39 Score=369.12 Aligned_cols=203 Identities=27% Similarity=0.430 Sum_probs=176.6
Q ss_pred EecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCC
Q 000904 994 RYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF 1073 (1232)
Q Consensus 994 ~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF 1073 (1232)
+|+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.. ...++|++++|+||++.+|
T Consensus 2 ~y~--~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYG--DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeC--CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 464 2469999999999999999999999999999999999999999999999999976 3456788999999999988
Q ss_pred cc-cHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1074 NG-TVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1074 ~g-TIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
.+ |+++|+.... ..+ ++++.++++.+++.+.... ...+||||||||++|||||+++|++|+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-----------PVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-----------chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 75 9999996421 111 3457788988888654332 235799999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1146 LDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||||++||+.+.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998753 47899999999999987 999999999999999999998764
No 256
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.3e-39 Score=357.14 Aligned_cols=211 Identities=21% Similarity=0.236 Sum_probs=177.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHhh-hcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHDL-RSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~L-R~~ 1062 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 468999999963 46999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred EEEEccCCCCCcc-cHHhccCCC----CC------CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCC-CCChh
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPL----SQ------HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGS-NWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~----~~------~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~-nLSgG 1126 (1232)
++|+||+|.+|.+ |+++|+... .. .+ ++++.++++.+++.+.... .... +||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~~LS~G 148 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLN----------RSVNEGFSGG 148 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcc----------cccccCcCHH
Confidence 9999999998876 788887421 00 11 2456777777777532211 1122 59999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD--CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++|||||+++|++|||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998754 47899999999999987 79999999999999999
Q ss_pred hhHHH
Q 000904 1204 PMKLM 1208 (1232)
Q Consensus 1204 p~~Ll 1208 (1232)
++++-
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 87553
No 257
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.1e-39 Score=364.60 Aligned_cols=213 Identities=30% Similarity=0.511 Sum_probs=188.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++.+|+. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ..+.|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999963 24699999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEccCCCCCcc-cHHhccCCCCC-------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ-------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~-------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|+||+|.+++. |+++||+.+.. ..++++.+.|+.++|.+.- +. ....||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~----------~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NK----------KVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-Cc----------chhhcCHHHHHHHHHHHH
Confidence 99999997754 99999975431 2356799999999998732 21 124799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-cEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFA-D-CTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~-~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.+ ||+|++|++|+++.+|+++++.+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998655 4 699999999999988 999999999999999999998654
No 258
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=359.26 Aligned_cols=211 Identities=23% Similarity=0.315 Sum_probs=184.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC--------ccEEEECCeeCCCCChH
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA--------GGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~--------~G~I~IDG~dI~~i~l~ 1057 (1232)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 689999999953 46999999999999999999999999999999999999998 99999999999888888
Q ss_pred hhhccEEEEccCCC-CCcccHHhccCCCC--------CC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCCh
Q 000904 1058 DLRSRFGIIPQDPT-LFNGTVRYNLDPLS--------QH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSM 1125 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~-LF~gTIr~NLdp~~--------~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSg 1125 (1232)
.+|+.++|+||+|. +|..|+++|+.... .. .++.++++|+.+++.+.. .....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-----------GRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 88889999999986 67889999985321 01 124567788887775432 334568999
Q ss_pred hHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEE
Q 000904 1126 GQRQLFCLGRALL---------RRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAI 1193 (1232)
Q Consensus 1126 GQRQrl~LARALL---------~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL 1193 (1232)
|||||++|||||+ .+|++|||||||++||..+.+.+.+.|++..+ ++|||+||||++.+.+ ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999987533 6899999999999976 9999999
Q ss_pred eCCEEEEecChhHHHh
Q 000904 1194 SDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1194 ~~G~vvE~g~p~~Ll~ 1209 (1232)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999875
No 259
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=358.04 Aligned_cols=222 Identities=23% Similarity=0.343 Sum_probs=186.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCC-----Ch
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKL-----GL 1056 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i-----~l 1056 (1232)
-++++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... ..
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999953 46999999999999999999999999999999999999986 49999999998754 24
Q ss_pred HhhhccEEEEccCCCCCc-ccHHhccCCCC---------------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1057 HDLRSRFGIIPQDPTLFN-GTVRYNLDPLS---------------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~-gTIr~NLdp~~---------------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
..+|++++|+||+|.+|. .|+++|+.... ...++++.++++..++.+.... .+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 567889999999998887 59999985210 1123457788888888654433 34
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
.+||+|||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5799999999999999999999999999999999999999999998754 37899999999998766 99999999999
Q ss_pred EEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1198 LAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1198 vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
+++.|+++++ . +....+++...
T Consensus 231 i~~~g~~~~~-~--~~~~~~~~~~~ 252 (262)
T PRK09984 231 VFYDGSSQQF-D--NERFDHLYRSI 252 (262)
T ss_pred EEEeCCHHHh-c--cHHHHHHHhhh
Confidence 9999999996 2 23455554443
No 260
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=355.99 Aligned_cols=201 Identities=25% Similarity=0.303 Sum_probs=173.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 689999999953 4699999999999999999999999999999999999999999999999998642 346999
Q ss_pred EccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
+||+|.+|. .|+++|+... .... ++++.++++.+++.+.... .+.+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999886 6999998632 1112 3457788888888654433 3458999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAIS--DGKLAEYDEP 1204 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~--~G~vvE~g~p 1204 (1232)
+++|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.+ ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998752 37899999999999877 99999998 5999998754
No 261
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=353.19 Aligned_cols=465 Identities=22% Similarity=0.240 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCC-----HHHHHHHHHhhHHHhhhhhh
Q 000904 706 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTP-----LGRVLSRVSSDLSIVDLDVP 780 (1232)
Q Consensus 706 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~-----~G~ilnR~s~D~~~vd~~~~ 780 (1232)
..+.+|..++.+.......+.++...+..+....+-+.++++.++..-.|+.... +...=+|+.+|+...-....
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 3456677777777777888888888888888888888888888877633332211 12234677888765543222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 000904 781 FSLIFAVGATTNAYSNLGVLAVVTW-------------------QVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKS 841 (1232)
Q Consensus 781 ~~l~~~~~~~~~~l~~l~v~~~~~~-------------------~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s 841 (1232)
.-...++..++++++-.+++.-.+. .+++.++-..++...+.+...+..-+-.+.++..|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 2222333444444443333331111 111111111222234455555555555556666654
Q ss_pred HHHHHHHHHHhhhHHHhhcchHHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000904 842 LVANHLAESIAGAMTIRAFEEEDR---FFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTF 918 (1232)
Q Consensus 842 ~l~~~~~E~l~g~~tIraf~~~~~---f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~g~~ 918 (1232)
.+.. +.| ....|..|+.|+. ..++....+..+.+..........|.......++.++.... .+-....|.+
T Consensus 247 ~Lvr-v~e---naE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li--~ap~~f~g~i 320 (604)
T COG4178 247 SLVR-VRE---NAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILI--AAPRYFSGQI 320 (604)
T ss_pred HHHH-HHh---hHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHh--ccHhhhcCcC
Confidence 4432 223 3445556655543 33333333333222222222222222222222222111111 1111236889
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCCCCcccCCCCCCCCCCCcceEEEEeeE
Q 000904 919 TPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHV------PSEAPEVVEDNRPPPNWPVVGKVDICDLQ 992 (1232)
Q Consensus 919 ~~g~~gl~l~~~~~l~~~l~~~v~~~~~~e~~~~sveRi~~~~~~------~~e~~~~~~~~~~~~~wp~~G~I~~~nvs 992 (1232)
+.|.+..+.+-..++...+.|++.++..+.+......|+.++... +.+.+.... .+-...-.....|+++|++
T Consensus 321 ~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~ 399 (604)
T COG4178 321 TFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLS 399 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeee
Confidence 999888888888889999999999999999999999999887631 222111100 0000000013679999999
Q ss_pred eEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCC
Q 000904 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTL 1072 (1232)
Q Consensus 993 ~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~L 1072 (1232)
+.-+++ ...++++|+++++||.+-|.|+||||||||+++|.|+.+-.+|+|.+-. -+++-++||.|.+
T Consensus 400 l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~ 467 (604)
T COG4178 400 LRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYL 467 (604)
T ss_pred EECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCC
Confidence 987554 4789999999999999999999999999999999999999999987752 1468999999999
Q ss_pred CcccHHhccC-CCC--CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000904 1073 FNGTVRYNLD-PLS--QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1073 F~gTIr~NLd-p~~--~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEa 1149 (1232)
-.||+|+-+. |.. .++|+|+.++|.+|||.+.+.++.+ .+. -..-||+|||||+++||.|++||++++||||
T Consensus 468 p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 468 PQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 9999999985 433 3899999999999999999988643 222 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEe
Q 000904 1150 TASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAIS 1194 (1232)
Q Consensus 1150 Ts~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~ 1194 (1232)
||+||.+++..+.+.++++.+++|||.|+||.....-.++.+-++
T Consensus 543 TsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 543 TSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 999999999999999999999999999999987776677766554
No 262
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.2e-38 Score=355.79 Aligned_cols=221 Identities=24% Similarity=0.375 Sum_probs=184.0
Q ss_pred EEEEeeEeEecCC-------CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh--
Q 000904 986 VDICDLQIRYRPD-------SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-- 1056 (1232)
Q Consensus 986 I~~~nvs~~Y~~~-------~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-- 1056 (1232)
|+++|++++|+.+ .+++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999631 3579999999999999999999999999999999999999999999999999988765
Q ss_pred -HhhhccEEEEccCCC--CC-cccHHhccCC-C---CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1057 -HDLRSRFGIIPQDPT--LF-NGTVRYNLDP-L---SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1057 -~~LR~~i~iVpQdP~--LF-~gTIr~NLdp-~---~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
..+|++++|+||+|. ++ ..|+++|+.. . ... .++++.++++..++... .....+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 153 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQLS 153 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccCC
Confidence 346889999999983 43 4689988742 1 111 12346667776665421 2233456899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
+|||||++|||||+++|+||||||||++||.++...+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999999999999999987532 7899999999999986 999999999999999
Q ss_pred cChhHHHhhcCCHHHH
Q 000904 1202 DEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~ 1217 (1232)
|+++++... ++.|..
T Consensus 234 g~~~~~~~~-~~~~~~ 248 (268)
T PRK10419 234 QPVGDKLTF-SSPAGR 248 (268)
T ss_pred CChhhccCC-CCHHHH
Confidence 999999864 454443
No 263
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.6e-38 Score=345.43 Aligned_cols=204 Identities=27% Similarity=0.391 Sum_probs=178.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... +++++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 468999999963 46999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EccCCCCCc-ccHHhccCCC---CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
+||+|.+|. .|+++|+... ...+++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998876 6999998631 233567888999999987654433 3479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
++|+|||||++||.++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998753 37899999999999876 99999999999999999865
No 264
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=331.24 Aligned_cols=215 Identities=24% Similarity=0.399 Sum_probs=185.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
++++|++..|.+ ..+|+||||++++||.++++||||+|||||+++|+|+.+|.+|+|.++|.||...+.++. |..|+
T Consensus 4 L~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 4 LEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 789999999975 469999999999999999999999999999999999999999999999999999998876 77899
Q ss_pred EEccCCCCCc-ccHHhccCCCCC------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPLSQ------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~~~------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
||||.-.+|. -||.|||..... ..+..+.++.+.+ .-|.......+.+|||||||.++|||||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lF----------P~Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF----------PRLKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHC----------hhHHHHhcCcccCCChHHHHHHHHHHHH
Confidence 9999999995 599999963211 1111133333332 2344444556779999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
+.+||+|+|||||.+|-+.--+.|.++|++..+ +.||+.|-++.....+ +||.+||++|+|+..|++++|.++++
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 999999999999999999999999999998653 5599999999999987 99999999999999999999998753
No 265
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-38 Score=332.17 Aligned_cols=171 Identities=42% Similarity=0.723 Sum_probs=160.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+...+.+++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+...+|++++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999996433469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
+||+|.+|+.|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999887 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
|||||++||.++.+.+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998766789999999999998899999999985
No 266
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.3e-38 Score=351.14 Aligned_cols=221 Identities=21% Similarity=0.345 Sum_probs=182.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee-----CCCCChHh-
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID-----ISKLGLHD- 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~l~~- 1058 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77666543
Q ss_pred ---hhccEEEEccCCC--C-CcccHHhccC----CCCC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1059 ---LRSRFGIIPQDPT--L-FNGTVRYNLD----PLSQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1059 ---LR~~i~iVpQdP~--L-F~gTIr~NLd----p~~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
+++.++|+||+|. + +..|+.+|+. .+.. ..++++.+.++..++.+ +.....+.+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 3467999999985 2 3457777763 1111 12345667777776642 12233456899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+++|++|+|||||++||..+.+.+.+.|++.. .+.|+|+|||+++.+.+ ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998753 37899999999999986 999999999999999
Q ss_pred cChhHHHhhcCCHHHH
Q 000904 1202 DEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~ 1217 (1232)
|+++++..++...|.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQ 246 (253)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 9999998765555543
No 267
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2e-38 Score=347.46 Aligned_cols=202 Identities=26% Similarity=0.354 Sum_probs=174.8
Q ss_pred EEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH---hhh
Q 000904 986 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH---DLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~---~LR 1060 (1232)
++++|++++|+++ .+.+|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999999643 25699999999999999999999999999999999999999999999999999877643 467
Q ss_pred ccEEEEccCCCCCc-ccHHhccCCCC----CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1061 SRFGIIPQDPTLFN-GTVRYNLDPLS----QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~-gTIr~NLdp~~----~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
+.++|+||+|.+|. .|+.+|+.... ..+ ++++.++++++++.+.....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999887 69999996321 122 235677888888766555443 47999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
+||||++++|++|+|||||++||.++.+.+.+.|++.. .++|+|+||||++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998754 37999999999997766999999999986
No 268
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.8e-38 Score=369.19 Aligned_cols=211 Identities=26% Similarity=0.363 Sum_probs=180.6
Q ss_pred eeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC----hHhhhccEEE
Q 000904 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG----LHDLRSRFGI 1065 (1232)
Q Consensus 990 nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~----l~~LR~~i~i 1065 (1232)
|++++|+. . .+ |+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ....|++++|
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 78999953 2 34 999999999999999999999999999999999999999999999986542 3456789999
Q ss_pred EccCCCCCcc-cHHhccCCC-CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1066 IPQDPTLFNG-TVRYNLDPL-SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~-~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+||+|.+|.+ |+++|+... .... ++++.++++..++.+.... .+.+||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 999999632 1111 2347788888877654433 345899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
+|++|+|||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.|+|++++.++...|
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999999999987543 6899999999999877 99999999999999999999998776555
No 269
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-38 Score=331.49 Aligned_cols=170 Identities=33% Similarity=0.566 Sum_probs=156.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ .++|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 468999999963 35999999999999999999999999999999999999999999999999998765 677889999
Q ss_pred EccCCCCCcc-cHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
+||+|.+|.+ |+++|+. ||+|||||++|||||+++|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998876 9998863 9999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
+|||||++||..+.+.+.+.|++.. ++.|+|++||+.+.+.+ ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999998753 36899999999999885 899999999974
No 270
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-38 Score=331.98 Aligned_cols=172 Identities=35% Similarity=0.517 Sum_probs=158.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC--hHhhhccE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG--LHDLRSRF 1063 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~--l~~LR~~i 1063 (1232)
|+++|++++|+. +++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++++.+ ....++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 468999999953 46999999999999999999999999999999999999999999999999998876 56778999
Q ss_pred EEEccCCCCCc-ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+|+||+|.+|. .|+++|+... ||+|||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 99999999885 4999998632 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
+++|||||++||..+.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999987543 5899999999999986 99999999985
No 271
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-38 Score=353.55 Aligned_cols=208 Identities=24% Similarity=0.347 Sum_probs=175.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1063 (1232)
.++++|++++|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .. ++++
T Consensus 6 ~l~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccceE
Confidence 4899999999963 3469999999999999999999999999999999999999999999999998752 23 3469
Q ss_pred EEEccCCCC---CcccHHhccCCC--------C---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1064 GIIPQDPTL---FNGTVRYNLDPL--------S---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1064 ~iVpQdP~L---F~gTIr~NLdp~--------~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+|+||+|.+ +..++++|+... . ...++++.++++.+++.+.... ...+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-----------QIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHH
Confidence 999999965 455788887421 0 1123456788888888654332 23579999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|++|||||+++|+||+|||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+++.+ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998753 37899999999999876 8999766 8999999999998
Q ss_pred Hh
Q 000904 1208 MK 1209 (1232)
Q Consensus 1208 l~ 1209 (1232)
.+
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
No 272
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=347.35 Aligned_cols=208 Identities=27% Similarity=0.404 Sum_probs=179.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999963 4699999999999999999999999999999999999999999999987 35799
Q ss_pred EEccCCCCCc---ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1065 IIPQDPTLFN---GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1065 iVpQdP~LF~---gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
|+||+|.++. .|+++|+......+++++.++++.+++.+..... ...||||||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998764 4888887533334577899999999987665432 3579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHHHHH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l 1218 (1232)
++|+|||||++||..+...+.+.|++..+ ++|||+|||+++.+.+ ||+|++|++ ++++.|+++++.++ ..|.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 99999999999999999999999987532 7899999999999976 999999965 79999999998753 345544
Q ss_pred H
Q 000904 1219 V 1219 (1232)
Q Consensus 1219 ~ 1219 (1232)
.
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 3
No 273
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.4e-38 Score=367.17 Aligned_cols=227 Identities=23% Similarity=0.380 Sum_probs=192.0
Q ss_pred eEEEEeeEeEecCCCC--ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC----ccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA----GGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~--~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~----~G~I~IDG~dI~~i~l~~ 1058 (1232)
-++++|+++.|..... .+++||||+|.+||.+||||+|||||||++++|.|+.++. +|+|.+||.|+..++-+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999964432 5999999999999999999999999999999999999988 899999999999988765
Q ss_pred h---h-ccEEEEccCCC-CCcc--cHHhccCC----C----CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCC
Q 000904 1059 L---R-SRFGIIPQDPT-LFNG--TVRYNLDP----L----SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNW 1123 (1232)
Q Consensus 1059 L---R-~~i~iVpQdP~-LF~g--TIr~NLdp----~----~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nL 1123 (1232)
+ | ++|++|||||. .++. ||.+-+.- - .+...+++.+.|+++++.+-... ..-+++|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 5 3 67999999995 5544 55444321 0 11134567888999988765443 1235789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
|||||||+.||+||+.+|++||+||||.+||..|.+.|.+.|++.. .+.++|+||||+..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998743 58899999999999988 99999999999999
Q ss_pred ecChhHHHhhcCCHHHHHHH
Q 000904 1201 YDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
.|++++++.++...|.+..-
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred ecCHHHHHhccCCcccHHHH
Confidence 99999999998877765543
No 274
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=9.8e-38 Score=343.52 Aligned_cols=203 Identities=25% Similarity=0.355 Sum_probs=168.8
Q ss_pred EEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCChHhhh
Q 000904 986 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE---PAGGKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 986 I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~LR 1060 (1232)
+.|+||+++|... .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. ..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhc
Confidence 5689999999654 3679999999999999999999999999999999999999 999999999998853 4678
Q ss_pred ccEEEEccCCCCCcc-cHHhccCCC---C--CCCH-----HHHHH-HHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1061 SRFGIIPQDPTLFNG-TVRYNLDPL---S--QHTD-----QEIWE-VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~g-TIr~NLdp~---~--~~sd-----~eI~~-aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
++++|+||+|.+|.+ |+++|+... . ...+ +.+.+ .|+.+++.+ .......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 899999999999987 999999631 1 1111 11222 444444432 22334568999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCh-hhhhh-cCeEEEEeCCEEEEec
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRI-PTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl-~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||++|||||+++|++|+|||||++||..+...+.+.|++.. .+.|+|++||++ +.+.+ ||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998753 478999999998 45555 9999999999999865
No 275
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-38 Score=340.78 Aligned_cols=197 Identities=25% Similarity=0.362 Sum_probs=168.3
Q ss_pred eeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----ChHhhhccEEE
Q 000904 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL----GLHDLRSRFGI 1065 (1232)
Q Consensus 990 nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i----~l~~LR~~i~i 1065 (1232)
|++++|+. ..+ |+||+|++ |.+||+|+||||||||+++|.|+++|++|+|.+||.++... +....|++++|
T Consensus 5 ~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 89999964 234 99999999 99999999999999999999999999999999999998643 23456889999
Q ss_pred EccCCCCCc-ccHHhccCCCC-CC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS-QH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~-~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+||+|.+|. .|+++|+.... .+ .++++.++++.+++.+... ..+.+||||||||++||||+++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHHHHhc
Confidence 999999885 59999986321 11 2345777888887755433 2346899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+|++|+|||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.+ ||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999987532 7899999999999976 9999999999998865
No 276
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-38 Score=317.75 Aligned_cols=212 Identities=27% Similarity=0.410 Sum_probs=185.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
+++++++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||.|+.+.+ ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 678899999975 334899999999999999999999999999999999999999999999999998865 567899999
Q ss_pred EccCCCCC-cccHHhccCCCCC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLSQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
++-+--++ .-|+|+||..|+. .+ ..++.+.-+..++.+...+.- .+||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv-----------~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV-----------GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH-----------hhhchhhHHHHHHHHHH
Confidence 99666666 5599999976652 22 345666667777777665542 36999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
.++|+|+|||||||+||..+...+++.|++... +++||+-||.++.+.. ||+|+++.+|+++..|+++++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999998654 8999999999999996 999999999999999999999765
No 277
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.8e-37 Score=334.56 Aligned_cols=185 Identities=24% Similarity=0.303 Sum_probs=162.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc--ccCCccEEEECCeeCCCCChHhh-hcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAGGKILVDGIDISKLGLHDL-RSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~L-R~~ 1062 (1232)
++++|++++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+..+. |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999963 4699999999999999999999999999999999999 58999999999999998876554 556
Q ss_pred EEEEccCCCCCcc-cHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
++|+||+|.+|.+ |+++|+ .. .+.+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998875 444443 00 12479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh--hcCeEEEEeCCEEEEecChhHHH
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM--DCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~--~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
+||+|||||++||..+...+.+.|++.. +++|+|++||+++.+. -||++++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999998753 3789999999999998 58999999999999999 56564
No 278
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-37 Score=334.87 Aligned_cols=190 Identities=24% Similarity=0.306 Sum_probs=161.0
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCChHhh
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE---PAGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e---p~~G~I~IDG~dI~~i~l~~L 1059 (1232)
.+.++|++|.|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999643 4579999999999999999999999999999999999999 89999999999998765 456
Q ss_pred hccEEEEccCCCCCc-ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1060 RSRFGIIPQDPTLFN-GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1060 R~~i~iVpQdP~LF~-gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
|++++|+||++.+|. .|+++|+..... +. ..+....||+|||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR---------CK------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh---------hc------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 889999999998886 599999863210 00 12234579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEe-cChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVA-HRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IA-Hrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
++|++|+|||||++||.++.+.+.+.|++..+ +.|+|+++ |+.+.+.+ ||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999997543 46766655 55667655 9999999999998764
No 279
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.2e-37 Score=345.25 Aligned_cols=210 Identities=20% Similarity=0.219 Sum_probs=177.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc--ccCCccEEEECCeeCCCCChHhhhc-
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAGGKILVDGIDISKLGLHDLRS- 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~l~~LR~- 1061 (1232)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++....++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3899999999963 3699999999999999999999999999999999998 6899999999999999887666554
Q ss_pred cEEEEccCCCCCcc-cHHhccCCC-C---------CCC----HHHHHHHHHHcCCcH-HHHhhccCCcccccCCCC-CCC
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDPL-S---------QHT----DQEIWEVLAKCHLGE-AVREKENGLDSLVVEDGS-NWS 1124 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp~-~---------~~s----d~eI~~aL~~~~L~~-~i~~~p~gLdt~v~e~G~-nLS 1124 (1232)
.++++||+|.+|.+ |+++|+... . +.+ .+++.++|+.+++.+ .... ... .||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~~LS 153 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSR-----------NVNEGFS 153 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcc-----------ccccCCC
Confidence 58999999998876 788886421 1 001 234567788777752 2222 222 599
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD--CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~ 1201 (1232)
||||||++|||||+++|+||||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998753 47899999999999976 799999999999999
Q ss_pred cChhHH
Q 000904 1202 DEPMKL 1207 (1232)
Q Consensus 1202 g~p~~L 1207 (1232)
|+|+.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999844
No 280
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.3e-37 Score=341.48 Aligned_cols=206 Identities=22% Similarity=0.315 Sum_probs=170.9
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC----CccEEEECCeeCCCCChHhhhccEEEEccCCC-CCc--
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP----AGGKILVDGIDISKLGLHDLRSRFGIIPQDPT-LFN-- 1074 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~-LF~-- 1074 (1232)
+|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... ...+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998764 222468999999995 343
Q ss_pred ccHHhccCC----CCC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1075 GTVRYNLDP----LSQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1075 gTIr~NLdp----~~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
-|+.+|+.. .+. ..++++.++++.+++.+. +......+.+||+|||||++||||++++|+||+||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 488877631 111 123457888998888631 11122344689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHHHH
Q 000904 1148 EATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLFGQ 1217 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~ 1217 (1232)
|||++||..+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|++++++..+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999987543 7899999999999976 9999999999999999999998765555544
No 281
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.7e-37 Score=333.08 Aligned_cols=182 Identities=25% Similarity=0.405 Sum_probs=160.3
Q ss_pred eEEEEeeEeEecCC----CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRPD----SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~----~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~ 1058 (1232)
.++++|++++|+.+ ..++|+|+||+|++||.++|+|+||||||||+++|.|++ +|++|+|.+||.++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999642 256999999999999999999999999999999999999 9999999999999875 36
Q ss_pred hhccEEEEccCCCCCc-ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1059 LRSRFGIIPQDPTLFN-GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~-gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
.|++++|+||+|.+|. .|+++|+... . .. . .||+|||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~---------~---~~-------------~--------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA---------A---KL-------------R--------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH---------H---Hh-------------c--------cCCHHHHHHHHHHHHH
Confidence 7889999999999886 4999887410 0 00 0 6999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhh-cCeEEEEeCCEEEEec
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIP-TVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~-ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
+++|++|+|||||++||..+.+.+.+.|++.. +++|+|+|||+++ .+.+ ||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998754 4789999999997 5654 9999999999998764
No 282
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.1e-37 Score=338.40 Aligned_cols=193 Identities=24% Similarity=0.340 Sum_probs=164.6
Q ss_pred EEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh----HhhhccE
Q 000904 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL----HDLRSRF 1063 (1232)
Q Consensus 988 ~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l----~~LR~~i 1063 (1232)
++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+.. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 3689999963 469999999999999999999999999999999999999999999999999765542 2457789
Q ss_pred EEEccCCCCCc-ccHHhccCCC---CC----CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPL---SQ----HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~---~~----~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+|++|+|.+|. .|+++|+... .. ..++++.++++..++.+.... ...+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-----------KIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999986 6999998631 11 124567788888887554332 23579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEE
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAI 1193 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL 1193 (1232)
||+++|++|||||||++||.++.+.+.+.|++.. .+.|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998753 378999999999988779999875
No 283
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.6e-37 Score=329.37 Aligned_cols=177 Identities=31% Similarity=0.493 Sum_probs=160.1
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+..+++++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999963 4699999999999999999999999999999999999999999999999999988888888899999
Q ss_pred ccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000904 1067 PQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVL 1146 (1232)
Q Consensus 1067 pQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILIL 1146 (1232)
|| +++.+++.+.... .+.+||+|||||++||||++++|++++|
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 6777888765433 3458999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1147 DEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1147 DEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999987544 6899999999999866 9999999999998754
No 284
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.8e-37 Score=329.59 Aligned_cols=172 Identities=27% Similarity=0.485 Sum_probs=155.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
.++++|++++| +|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 8999999999999999999999999999999999999999999999999988864 4567899
Q ss_pred EEEccCC----CCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1064 GIIPQDP----TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1064 ~iVpQdP----~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+|+||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999996 3445799999853110 99999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
+|++|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998753 47899999999999988 999999999975
No 285
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-38 Score=330.36 Aligned_cols=214 Identities=25% Similarity=0.396 Sum_probs=185.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i~ 1064 (1232)
++.+|++.+|. .-.+++||||++++||.+|++|||||||||+++++.|+|+|++|+|.++|.||..++.+.. |..|+
T Consensus 5 L~v~~l~k~FG--Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFG--GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecC--CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 57899999996 3469999999999999999999999999999999999999999999999999999998886 56688
Q ss_pred EEccCCCCCcc-cHHhccCCCCC-------------------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ-------------------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~-------------------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
--+|.+.+|.+ ||-||+..... ...++..+.|+.++|.+.... ...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-----------~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-----------PAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-----------hhhcCC
Confidence 89999999965 99999842100 112445677777777665433 345899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
+||++||-|||||..+|++|+||||.|++.+.-...+.+.|++..+ +.|+++|-||++.|++ ||||+||+.|+++..
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999999888888888887653 4899999999999999 999999999999999
Q ss_pred cChhHHHhhcC
Q 000904 1202 DEPMKLMKREG 1212 (1232)
Q Consensus 1202 g~p~~Ll~~~~ 1212 (1232)
|+|++..++|.
T Consensus 232 G~P~eV~~dp~ 242 (250)
T COG0411 232 GTPEEVRNNPR 242 (250)
T ss_pred CCHHHHhcCHH
Confidence 99999998763
No 286
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.3e-37 Score=322.31 Aligned_cols=164 Identities=27% Similarity=0.356 Sum_probs=149.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999633 46999999999999999999999999999999999999999999999982 68999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
+||+|.++++|+++|+... .+.+||+|||||++||||++++|++|+
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999998631 235899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
|||||++||.++.+.+.+.|++. ++|+|++|||++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999975 689999999999887799999998764
No 287
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.5e-37 Score=342.65 Aligned_cols=206 Identities=21% Similarity=0.295 Sum_probs=176.1
Q ss_pred EEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEE
Q 000904 987 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGII 1066 (1232)
Q Consensus 987 ~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iV 1066 (1232)
+++|++++ .+|+|+||+|++||.+||+|+||||||||+++|.|+++ .+|+|.+||.++.+.+..++++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 46777774 27999999999999999999999999999999999986 499999999999988888888899999
Q ss_pred ccCCC-CCcccHHhccCCCCC--CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1067 PQDPT-LFNGTVRYNLDPLSQ--HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1067 pQdP~-LF~gTIr~NLdp~~~--~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
||+|. .+..|+++|+..... .+ ++++.++++.+++.+.... ....||+|||||++|||||++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-----------SVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhc
Confidence 99985 457799999874321 11 3456778888777543322 345799999999999999997
Q ss_pred -------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1140 -------RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1140 -------~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+|++|+|||||++||..+...+.+.|++.. .+.|||+|||+++.+.+ ||+|++|++|++++.|+++++.+.
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 679999999999999999999999998754 47899999999998766 999999999999999999998753
No 288
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=321.13 Aligned_cols=216 Identities=28% Similarity=0.443 Sum_probs=185.6
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hcc
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSR 1062 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~ 1062 (1232)
+.+..+|+..+|+ ..+|.+||||++++||.||+.||||+||||.+.++.|+++|++|+|.+||.||+.++++.. |..
T Consensus 3 ~~L~a~~l~K~y~--kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYK--KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhC--CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4578899999996 3579999999999999999999999999999999999999999999999999999999875 667
Q ss_pred EEEEccCCCCCcc-cHHhccCCCCC---------CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPLSQ---------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~~~---------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
|||.||||.+|.+ ||++||...-+ ...+++.+.|+..++...-. ..+..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~-----------~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRD-----------SKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhc-----------CcccccccchHHHHH
Confidence 9999999999966 99999964221 12234556777777654332 235689999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecCh-hhhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRI-PTVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl-~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|||||..+|+.++||||.|++|+-+-..||+.|+... .|--|++.-|.. +|+.-|||.+++.+|+|...|+|+++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998754 356788888986 56666999999999999999999999987
Q ss_pred cC
Q 000904 1211 EG 1212 (1232)
Q Consensus 1211 ~~ 1212 (1232)
+.
T Consensus 230 ~~ 231 (243)
T COG1137 230 ED 231 (243)
T ss_pred hh
Confidence 53
No 289
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-37 Score=331.84 Aligned_cols=198 Identities=23% Similarity=0.370 Sum_probs=172.7
Q ss_pred eEEEEeeEeEecCCC-------CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH
Q 000904 985 KVDICDLQIRYRPDS-------PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~-------~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~ 1057 (1232)
-++++|++..|.-.. -.+++||||+|++||.+||||+|||||||+.++|.||++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478899999985321 26899999999999999999999999999999999999999999999999987765
Q ss_pred hhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1058 DLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1058 ~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
.+..++++.+.|+++|+.+..... .+++||||||||++|||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~r----------yPhelSGGQrQRi~IARAL 124 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYR----------YPHELSGGQRQRIGIARAL 124 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhc----------CCcccCchhhhhHHHHHHH
Confidence 122356799999999987754432 3468999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCH
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSL 1214 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~ 1214 (1232)
+-+|+++|+|||||+||....+.|.+.+++. ..+-|.++||||++.++. ||||.||..|+|+|.|+.++++.++...
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCH
Confidence 9999999999999999999999988888753 237899999999999998 9999999999999999999999998888
Q ss_pred HHHHHHH
Q 000904 1215 FGQLVRE 1221 (1232)
Q Consensus 1215 f~~l~~~ 1221 (1232)
|.+..-+
T Consensus 205 YTk~Ll~ 211 (268)
T COG4608 205 YTKALLS 211 (268)
T ss_pred HHHHHHH
Confidence 8665543
No 290
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-37 Score=330.44 Aligned_cols=181 Identities=22% Similarity=0.323 Sum_probs=158.9
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHhhh
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHDLR 1060 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~LR 1060 (1232)
.++++|++++|+++ .+++|+|+||+|++||.++|+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999642 246999999999999999999999999999999999986 489999999999886 5678
Q ss_pred ccEEEEccCCCCCcc-cHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1061 SRFGIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1061 ~~i~iVpQdP~LF~g-TIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
++++|++|+|.+|.+ |+++|+... ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988875 999998520 0000 799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCeEEEEeC-CEEEEec
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT-V-MDCTMVLAISD-GKLAEYD 1202 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t-i-~~~DrVlVL~~-G~vvE~g 1202 (1232)
+|++|+|||||++||.++...+.+.|++.. .++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998753 47899999999984 4 45999999999 9999865
No 291
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.3e-36 Score=339.63 Aligned_cols=210 Identities=20% Similarity=0.244 Sum_probs=168.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHhhh-cc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHDLR-SR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~LR-~~ 1062 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 689999999963 46999999999999999999999999999999999995 69999999999999887766654 57
Q ss_pred EEEEccCCCCCcc-cHHhc-------cCCCCC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCC-CCCChh
Q 000904 1063 FGIIPQDPTLFNG-TVRYN-------LDPLSQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDG-SNWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~N-------Ldp~~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G-~nLSgG 1126 (1232)
++|++|+|.++.. |..++ +..... .. ++.+.+.++..++.+ ++.+ ... .+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~---~~~~~~LS~G 149 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-------DLLT---RSVNVGFSGG 149 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-------hhcc---cCCCCCCCHH
Confidence 9999999977654 33333 221111 01 122334444444421 1111 112 379999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD--CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~g~ 1203 (1232)
||||++||||++++|+||+|||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. +|+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 9999999999999999999999999999999999999988753 36899999999999987 79999999999999999
Q ss_pred hhHH
Q 000904 1204 PMKL 1207 (1232)
Q Consensus 1204 p~~L 1207 (1232)
++..
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 8754
No 292
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5e-37 Score=338.55 Aligned_cols=190 Identities=27% Similarity=0.401 Sum_probs=163.4
Q ss_pred ceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-ccHHhcc
Q 000904 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN-GTVRYNL 1081 (1232)
Q Consensus 1003 L~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~-gTIr~NL 1081 (1232)
|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|+||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999887 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCC
Q 000904 1082 DPL-----SQHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATAS 1152 (1232)
Q Consensus 1082 dp~-----~~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~ 1152 (1232)
... ...++ +++.++++.+++.+.... ...+||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 531 12222 246777888887654333 2357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1153 IDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1153 LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
||+.+.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998753 37899999999999877 9999999999999999887763
No 293
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-36 Score=372.93 Aligned_cols=213 Identities=25% Similarity=0.380 Sum_probs=184.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhh-ccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR-SRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1063 (1232)
.++++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..+++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999887776655 469
Q ss_pred EEEccCCCCCcc-cHHhccCCCCC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+|+||+|.+|.+ |+++|+..... ..++++.++++.+++.+... ....+||||||||++|||||++
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-----------SSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-----------CChhhCCHHHHHHHHHHHHHHc
Confidence 999999988865 99999864221 12356778888887754322 2335799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
+|++|||||||++||+.+.+.+.+.|++.. ++.|||+||||++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH
Confidence 999999999999999999999999998753 47899999999999877 999999999999999999988653
No 294
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=308.59 Aligned_cols=217 Identities=29% Similarity=0.415 Sum_probs=188.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----------
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL---------- 1054 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i---------- 1054 (1232)
.++++|+..+|.+. .||||||++-++|+.|.|+|.|||||||+++++.=+-.|++|+|.++|..|...
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 48899999999754 599999999999999999999999999999999999999999999999888532
Q ss_pred ---ChHhhhccEEEEccCCCCCcc-cHHhccC--CC---CCCCH---HHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1055 ---GLHDLRSRFGIIPQDPTLFNG-TVRYNLD--PL---SQHTD---QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1055 ---~l~~LR~~i~iVpQdP~LF~g-TIr~NLd--p~---~~~sd---~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
.++.+|+++++|+|+-.|.+. |+.+|.- |. +...+ +.....|.++|+.+....-| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 266789999999999988854 9999973 42 22222 33456788888877655443 47
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
|||||+||++|||||..+|+++++|||||+||++--..+.+.+++.. .|+|+++|||.+.+.++ +.+|+.+.+|+|.|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999999999999888888888754 48999999999999999 78999999999999
Q ss_pred ecChhHHHhhcCCH
Q 000904 1201 YDEPMKLMKREGSL 1214 (1232)
Q Consensus 1201 ~g~p~~Ll~~~~~~ 1214 (1232)
.|+|++++.+|.|.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999998874
No 295
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.6e-37 Score=338.92 Aligned_cols=191 Identities=28% Similarity=0.362 Sum_probs=160.1
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc-cCCCCC-cccH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP-QDPTLF-NGTV 1077 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp-QdP~LF-~gTI 1077 (1232)
.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++|+| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346778999997 667665 5699
Q ss_pred HhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000904 1078 RYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150 (1232)
Q Consensus 1078 r~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaT 1150 (1232)
++|+.... ..+. +++.++++.+++.+.... ...+||+|||||++|||||+.+|++|+|||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT-----------PVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99985311 1222 234566777666543322 23579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1151 ASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1151 s~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
++||.++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999998753 36899999999999877 8999999999998764
No 296
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-37 Score=374.53 Aligned_cols=212 Identities=23% Similarity=0.334 Sum_probs=181.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC--CccEEEECCeeCCCCChHh-hhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP--AGGKILVDGIDISKLGLHD-LRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~-LR~ 1061 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+..+ .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999953 4699999999999999999999999999999999999996 8999999999998877654 467
Q ss_pred cEEEEccCCCCCcc-cHHhccCCCC------CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDPLS------QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp~~------~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
+++|+||+|.+|.. |+++|+.... ..+ .+++.++++.+++.+.. .....+||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-----------ATPVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-----------ccchhhCCHHHHHH
Confidence 89999999988864 9999996321 112 23466777777764322 22345799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++|||||+++|+||||||||++||+++...+.+.|++.. ++.|||+||||++.+.+ ||+|++|++|++++.|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998753 47899999999999987 9999999999999999998875
Q ss_pred h
Q 000904 1209 K 1209 (1232)
Q Consensus 1209 ~ 1209 (1232)
.
T Consensus 232 ~ 232 (506)
T PRK13549 232 E 232 (506)
T ss_pred H
Confidence 3
No 297
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.3e-36 Score=328.39 Aligned_cols=194 Identities=23% Similarity=0.328 Sum_probs=167.9
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|++++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 468999999963 46999999999999999999999999999999999999999999999999987643 467889999
Q ss_pred EccCCCCC-cccHHhccCCCC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
+||+|.++ ..|+++|+.... ...++++.++++..++.+.... ...+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 679999996443 3467788899999998754322 2357999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEE
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAI 1193 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL 1193 (1232)
|||||||++||+.+.+.+.+.|++.. .++|+|+|||+...+.+ +|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998643 47899999998776655 8898876
No 298
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-36 Score=329.78 Aligned_cols=194 Identities=24% Similarity=0.336 Sum_probs=168.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 688999999963 46999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EccCCCCCc-ccHHhccCCCC----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
++|++.++. .|+++|+.... ...++++.++++.+++.+.... ...+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999998875 69999985321 1345678889999998765432 2357999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhc-CeEEEE
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDC-TMVLAI 1193 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~-DrVlVL 1193 (1232)
|++|+|||||++||.++.+.+.+.|++.. .++|+|++||+++.+..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998753 478999999999999775 577776
No 299
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-37 Score=375.25 Aligned_cols=212 Identities=21% Similarity=0.311 Sum_probs=181.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1063 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+.+.. |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999953 469999999999999999999999999999999999999999999999999988776554 4679
Q ss_pred EEEccCCCCCcc-cHHhccCCCC-------CC---C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS-------QH---T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~-------~~---s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
+|+||+|.+|.+ |+++|+.... .. + ++++.++++.+++.+.. .....+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-----------DEKVANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-----------ccchhhCCHHHH
Confidence 999999988765 9999986311 10 1 23466777777765322 223357999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhH
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
||++|||||+.+|+||||||||++||..+...+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998743 47899999999999987 99999999999999999988
Q ss_pred HHh
Q 000904 1207 LMK 1209 (1232)
Q Consensus 1207 Ll~ 1209 (1232)
++.
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 754
No 300
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=372.41 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=180.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh-hccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL-RSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L-R~~i 1063 (1232)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999953 469999999999999999999999999999999999999999999999999976655443 5789
Q ss_pred EEEccCCCCCcc-cHHhccCCCC-------CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS-------QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~-------~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
+|+||+|.+|.. |+++|+.... ..+ ++++.++++.+++.+.. .....+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----------DKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCCHHHHHHH
Confidence 999999988764 9999996421 112 23466777777765432 222357999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
+|||||+.+|++|+|||||++||+.+.+.+.+.|++.. .+.|||+||||++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998742 46899999999999977 89999999999999999887743
No 301
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-37 Score=381.45 Aligned_cols=223 Identities=23% Similarity=0.336 Sum_probs=182.5
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC----------
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS---------- 1052 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~---------- 1052 (1232)
.|+++|++++|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCCh---Hhhh-ccEEEEccCC--CCCc-ccHHhccCCC----CCCC----HHHHHHHHHHcCCcHHHHhhccCCccccc
Q 000904 1053 KLGL---HDLR-SRFGIIPQDP--TLFN-GTVRYNLDPL----SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVV 1117 (1232)
Q Consensus 1053 ~i~l---~~LR-~~i~iVpQdP--~LF~-gTIr~NLdp~----~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~ 1117 (1232)
+.+. ..+| ++|+||+|+| .++. -||++|+... ...+ ++++.++|+.+++.+.- ....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~--------~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ--------TILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh--------hHHh
Confidence 2222 2344 5799999999 5665 5999998521 1112 24577888888885310 0112
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEe
Q 000904 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAIS 1194 (1232)
Q Consensus 1118 e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~ 1194 (1232)
....+||||||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. .++|||+||||++.+.+ ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 2345899999999999999999999999999999999999999999998753 27899999999999977 99999999
Q ss_pred CCEEEEecChhHHHhhcCCHH
Q 000904 1195 DGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1195 ~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
+|++++.|+++++++.+...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999987654333
No 302
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.7e-36 Score=313.48 Aligned_cols=159 Identities=32% Similarity=0.509 Sum_probs=147.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRFG 1064 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i~ 1064 (1232)
++++|++++|+. .++++++||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 478999999963 3699999999999999999999999999999999999999999999999999888754 4677899
Q ss_pred EEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000904 1065 IIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRIL 1144 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kIL 1144 (1232)
|+|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1145 VLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1145 ILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
+|||||++||.++.+.+.+.|++.. ++.|+|++||+++.+.+ ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998753 47899999999998876 99999999999976
No 303
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=326.05 Aligned_cols=203 Identities=28% Similarity=0.376 Sum_probs=179.4
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh----hccEEEEccCCCCCc-cc
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL----RSRFGIIPQDPTLFN-GT 1076 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L----R~~i~iVpQdP~LF~-gT 1076 (1232)
-++|+||+|+.||...|.|=||||||||++++.||+||++|+|++||.||..++..+| |+++++|+|.--||. -|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 4789999999999999999999999999999999999999999999999999997766 368999999998885 59
Q ss_pred HHhccCCCCC---C----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000904 1077 VRYNLDPLSQ---H----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1077 Ir~NLdp~~~---~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEa 1149 (1232)
|.+|....-+ . ..+...++|+.+||.++-.+.|+ +||||+|||+.|||||..+|+||+||||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~-----------eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-----------ELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc-----------cccchHHHHHHHHHHHccCCCEEEecCc
Confidence 9999863211 1 23457889999999998877764 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1150 TASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1150 Ts~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
.|+||+--...+|+-|.+.- -.+|+++||||++.... -|||..|++|+|+..|+|+|++.+|.--|
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 99999999999999876532 36899999999998776 89999999999999999999998875433
No 304
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-36 Score=370.32 Aligned_cols=211 Identities=20% Similarity=0.219 Sum_probs=183.8
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..++|+++++
T Consensus 4 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 889999999963 359999999999999999999999999999999999999999999999998877777778888999
Q ss_pred EccCCCC--C-------cccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1066 IPQDPTL--F-------NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1066 VpQdP~L--F-------~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
+||+|.+ + ..|+++|+... ...++++.++++.+++.+..... ..+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRR-----------FKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCC-----------cccCCHHHHHHHHHHHH
Confidence 9999753 2 35888887532 22345688889998886543332 34799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|+++|++|+|||||++||+++.+.+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|++++++++
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 999999999999999999999999999998753 36899999999999987 899999999999999999998764
No 305
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.1e-36 Score=370.83 Aligned_cols=220 Identities=22% Similarity=0.368 Sum_probs=182.5
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCChH
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~l~ 1057 (1232)
-++++|++++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 24699999999999999999999999999999999999997 799999999999877654
Q ss_pred h---hh-ccEEEEccCCC--CCc-ccHHhccCC----CCCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1058 D---LR-SRFGIIPQDPT--LFN-GTVRYNLDP----LSQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1058 ~---LR-~~i~iVpQdP~--LF~-gTIr~NLdp----~~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
+ .| ++++|+||+|. ++. -|+++|+.. .... .++++.++++.+++.+.... ......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--------~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR--------LTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhhCCcc
Confidence 3 33 57999999985 443 488888741 1111 13567888998888642111 1112357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
||||||||++|||||+.+|++|+|||||++||+.+.+.+.+.|++.. .+.|||+||||++.+.+ ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998743 37899999999999876 9999999999999
Q ss_pred EecChhHHHhhcC
Q 000904 1200 EYDEPMKLMKREG 1212 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~ 1212 (1232)
+.|+++++++.+.
T Consensus 237 ~~g~~~~~~~~~~ 249 (529)
T PRK15134 237 EQNRAATLFSAPT 249 (529)
T ss_pred EeCCHHHHhhCCC
Confidence 9999999986543
No 306
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.8e-37 Score=300.03 Aligned_cols=199 Identities=27% Similarity=0.440 Sum_probs=177.2
Q ss_pred eEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCC
Q 000904 993 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTL 1072 (1232)
Q Consensus 993 ~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~L 1072 (1232)
.+|.....++|+++||++++||.++|.||||||||||++.++-+..|++|.+++.|.|++.++...+|++++|+.|.|.|
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 35665666899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHhccC-CCC----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1073 FNGTVRYNLD-PLS----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1073 F~gTIr~NLd-p~~----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
|.+||.+|+- |+. ..+.+...+.|+++++.+.+-.+ +..+||||||||++|+|-|---|+||+||
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k----------~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTK----------NITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcc----------hhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999985 432 23455667788888888776544 34689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhh-hhhcCeEEEEeCCEEEEe
Q 000904 1148 EATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPT-VMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~t-i~~~DrVlVL~~G~vvE~ 1201 (1232)
|+||+||..+.+.|.+.|.+.+ ++..++-||||.+. ++.+||++-+..|++-|.
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 9999999999999999998876 36799999999988 777999999999887543
No 307
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-36 Score=308.25 Aligned_cols=213 Identities=23% Similarity=0.370 Sum_probs=185.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+.+|++++-. .+.+|+|+||+++|||.+||+||||||||||+++|.|-..|++|++.++|+|+++.+..++-++-++
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 67889988764 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCC-CcccHHhccC----CCCC---CCHHH--HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1066 IPQDPTL-FNGTVRYNLD----PLSQ---HTDQE--IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1066 VpQdP~L-F~gTIr~NLd----p~~~---~sd~e--I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
.||+..+ |.=|++|-+. |.+. ..+++ ..++|+++++..+-.+. =..||||||||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999875 8889988764 4422 22444 67899999887665432 2369999999999999
Q ss_pred HHcc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1136 ALLR------RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1136 ALL~------~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
+|.. .+++|+||||||+||......+.++.|+.. .++.|+.|=||++.... ||||++|.+||++..|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9975 346999999999999999999999988743 47899999999998876 899999999999999999999
Q ss_pred Hhhc
Q 000904 1208 MKRE 1211 (1232)
Q Consensus 1208 l~~~ 1211 (1232)
+.++
T Consensus 229 lt~E 232 (259)
T COG4559 229 LTDE 232 (259)
T ss_pred cCHH
Confidence 9763
No 308
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.7e-36 Score=326.00 Aligned_cols=195 Identities=22% Similarity=0.249 Sum_probs=167.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.++++|++++|+. +++++++||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998752 3456799
Q ss_pred EEccCCCCCcc-cHHhccCCC----CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL----SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~----~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
|+||+|.++.+ |+++|+... +...++.+.++++..++.+.. + ....+||+|||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-------D----TLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-------c----CChhhCCHHHHHHHHHHHHHhc
Confidence 99999998876 999998521 222345567788888775432 2 2235799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeC
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISD 1195 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~ 1195 (1232)
+|++|+|||||++||.++.+.+.+.|++. .+++|+|++||+++.+.+ ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999999864 347899999999999977 899999874
No 309
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5e-36 Score=323.57 Aligned_cols=192 Identities=21% Similarity=0.271 Sum_probs=164.6
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 688999999963 469999999999999999999999999999999999999999999999999875 34567889999
Q ss_pred EccCCCCC-cccHHhccCCC--CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1066 IPQDPTLF-NGTVRYNLDPL--SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~--~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+||++.++ ..|+++|+... ....+.++.++++..++.+.... ...+||+|||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY-----------PCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC-----------ChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999886 57999998632 11234567888888877543321 224799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCeEE
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
+|||||||++||..+.+.+.+.|++. ..++|+|++||+.+.+.++|.-.
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 99999999999999999999999974 34789999999999999998643
No 310
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.4e-36 Score=328.77 Aligned_cols=198 Identities=24% Similarity=0.359 Sum_probs=164.5
Q ss_pred EEEEeeEeEecC----C-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEEC--C--eeCCCCCh
Q 000904 986 VDICDLQIRYRP----D-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD--G--IDISKLGL 1056 (1232)
Q Consensus 986 I~~~nvs~~Y~~----~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~ID--G--~dI~~i~l 1056 (1232)
++++|++++|+. + .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+| | +++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 689999999953 1 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred Hh---h-hccEEEEccCCCCCcc-cHHhccCC----CCC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1057 HD---L-RSRFGIIPQDPTLFNG-TVRYNLDP----LSQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1057 ~~---L-R~~i~iVpQdP~LF~g-TIr~NLdp----~~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
.+ + +++++|+||+|.+|.. |+++|+.. .+. ..++++.++++..++.+...+. .+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHL----------PPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhC----------CcccCC
Confidence 43 3 4679999999988754 89999852 111 1234667788888876533222 245899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEE
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAI 1193 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL 1193 (1232)
+|||||++|||||+++|++|+|||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998753 37899999999999875 9999876
No 311
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.2e-36 Score=366.60 Aligned_cols=211 Identities=23% Similarity=0.334 Sum_probs=178.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC--CccEEEECCeeCCCCChHh-hhcc
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP--AGGKILVDGIDISKLGLHD-LRSR 1062 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI~~i~l~~-LR~~ 1062 (1232)
++++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+..+ .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 689999999953 4699999999999999999999999999999999999987 7999999999998877654 4578
Q ss_pred EEEEccCCCCCcc-cHHhccCCCCC-------CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPLSQ-------HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~~~-------~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
++|+||+|.+|.. |+++|+..... .. ++++.++++.+++.+...+ ....+||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----------RPVGDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----------CchhhCCHHHHHH
Confidence 9999999988764 99999863211 11 2346677777776432111 1235799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++|||||+++|+||+|||||++||+.+.+.+.+.|++.. +++|||+||||++.+.+ ||+|++|++|++++.+++++..
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 999999999999999999999999999999999988742 47899999999999987 9999999999999999887653
No 312
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-36 Score=365.86 Aligned_cols=207 Identities=25% Similarity=0.323 Sum_probs=176.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.|+...+. ..+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999953 469999999999999999999999999999999999999999999999999976543 3467889
Q ss_pred EEEccCCCCCcc-cHHhccCCCC-----C-CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLS-----Q-HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~-----~-~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
+|+||+|.+|.+ |+++|+.... . .. ++++.++++.+++.+.. .....+||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-----------DTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-----------CCchhhCCHHHHHHHH
Confidence 999999988865 9999986321 1 11 23567778777764321 2234589999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+||||++.+.+ ||+|++|++|++++.+++
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998753 47899999999999877 999999999999876654
No 313
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-33 Score=332.37 Aligned_cols=380 Identities=17% Similarity=0.205 Sum_probs=309.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 303 TIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEG-KAG---FKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~-~~~---~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
.+.+..|+.+..+.++.++.......-|.+++++++-+.. .+. .+..-..+++..++..+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678889999999999999999999999999998876 222 122344555555556666666666778889999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEF-PFWFHQIWTTSVQLCIALIILFHAVGL-ATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~-~~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~g 456 (1232)
..|+|..++..+.++.....+. +.+||+++.++.|++-+.+. ..++.+.--..+|.+.++.++... .| .+++.
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~----nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~-S~~Ltlv~ 294 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDE----NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL-SWRLTLVT 294 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhcc----CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-hHHHHHHH
Confidence 9999999999999999888764 46999999999999999885 457777777778888888777654 66 77788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
+..+++++.+..++++..++..++..++..+..+..+|.|++||+|++|+-|+...+++.+.=+.-++.-+|-....++.
T Consensus 295 ~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f 374 (716)
T KOG0058|consen 295 LIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF 374 (716)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 88888888999999999999999999999999999999999999999999999888877664444444444444444333
Q ss_pred HHHH--hHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 537 TFLF--WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 537 ~~~~--~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
...+ ..--..++++.+|.+...++.+|++..-+.+-+--.+..++..+....+.++++..|.+|+.+|++.++.-+..
T Consensus 375 ~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~ 454 (716)
T KOG0058|consen 375 FGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT 454 (716)
T ss_pred HhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC
Confidence 2221 12234677888999999999999999999988778888999999999999999999999999999875433222
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
....|. . ..+.|+++|++|+||.+++.|+|+|+||+|+|||.||+||||||||||+.+.|+..|+|.+|+|.-
T Consensus 455 G~~~p~-~-~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 455 GTLAPD-H-LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred Cccccc-c-ccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 222332 1 568999999999999999999999999999999999999999999999999999999999999853
No 314
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-36 Score=365.25 Aligned_cols=208 Identities=18% Similarity=0.293 Sum_probs=175.5
Q ss_pred EEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccEEEE
Q 000904 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRFGII 1066 (1232)
Q Consensus 988 ~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i~iV 1066 (1232)
++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999953 4699999999999999999999999999999999999999999999999999766543 457789999
Q ss_pred ccCCCCCc-ccHHhccCCCC----C--CCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1067 PQDPTLFN-GTVRYNLDPLS----Q--HTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1067 pQdP~LF~-gTIr~NLdp~~----~--~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
||+|.+|. .|+++|+.... . .+. +++.++++.+++.+ .......+||||||||++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHHH
Confidence 99998764 59999986311 1 122 23556666665542 223345689999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
||+++|++|||||||++||..+.+.+.+.|++.. .+.|||+||||++.+.+ ||+|++|++|++++.|+++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999999998743 47899999999999877 9999999999999999988874
No 315
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.4e-36 Score=295.38 Aligned_cols=206 Identities=28% Similarity=0.393 Sum_probs=174.5
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---hHhh
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG---LHDL 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~---l~~L 1059 (1232)
.|++++++..-+.+ .-.+|+||++.|++||.+||||+||||||||+..|.|+-+|++|+|.+.|+++.+++ ...+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47788887776432 335899999999999999999999999999999999999999999999999999887 4455
Q ss_pred h-ccEEEEccCCCCC-cccHHhccC-CC---CC-CC--HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 R-SRFGIIPQDPTLF-NGTVRYNLD-PL---SQ-HT--DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 R-~~i~iVpQdP~LF-~gTIr~NLd-p~---~~-~s--d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
| +++|+|+|.-.|. +-|-.||+. |. ++ .. .+...+.|+++||.+.....| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 5 6799999998876 558888874 43 22 12 233567788888876655554 5799999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
++||||+.-+|+||+-||||-+||.+|-+.|-+.+-... .+.|.++||||......|||++-|.+|+++|.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999876532 47899999999999999999999999999873
No 316
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-35 Score=322.09 Aligned_cols=193 Identities=27% Similarity=0.318 Sum_probs=166.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 789999999963 469999999999999999999999999999999999999999999999998753 1 27889999
Q ss_pred EccCCCCC-cccHHhccCCC---CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1066 IPQDPTLF-NGTVRYNLDPL---SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~---~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
++|++.++ ..|+++|+... ....++++.++++.+++.+.. +.+ ..+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~----------~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HLP----------FGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cCC----------hhhcCHHHHHHHHHHHHHhcCC
Confidence 99988765 67999998532 123456789999999987643 222 2479999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
++|+|||||++||..+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999864 347899999999999988 99988754
No 317
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.2e-35 Score=320.09 Aligned_cols=192 Identities=23% Similarity=0.294 Sum_probs=163.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+.|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 468999999963 46999999999999999999999999999999999999999999999999998765 456789999
Q ss_pred EccCCCCCc-ccHHhccCCCC---CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1066 IPQDPTLFN-GTVRYNLDPLS---QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~~---~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
+||++.+|. .|+++|+.... ...++++.++++.+++.+.... ...+||+|||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998876 69999985321 1224468889999988765432 23579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCeEEE
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCTMVLA 1192 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~DrVlV 1192 (1232)
++|+|||||++||..+.+.+.+.|++. ..+.|+|++||+...+ .||+++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 999999999999999999999999874 3478999999998543 3466654
No 318
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.9e-32 Score=343.27 Aligned_cols=381 Identities=18% Similarity=0.149 Sum_probs=283.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 299 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
..++...+.+++.++++.++.++..++..+.|++++.+++.+..++......+.+++++++..++..++.....+...+.
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788889999999999999999999999999997642211112233344555566667777767677778889
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~g 456 (1232)
+.++...+...+|+|.++++.....+.++|+++|.+++|++++.++.. .+..++...+..++++++++. ++| .+++.
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~l~~ 169 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP-INWAAGLIL 169 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999998887888999999999999999998754 566666666665655555443 344 44555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAI----EILRNVEYKWLSAVQLR 532 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i----~~~R~~E~~~l~k~~~~ 532 (1232)
++++++...+...+.++.++.+++.++..++..+.+.|.++||++||.|+||+.+.+++ ++.|+.+.+..+.....
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666678888999999999999999999999999999999999999888876 55666666655554444
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHhCCCcChh---------hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000904 533 KAYNTFLFWSSPVLVSTATFGACYFLNVPLYAS---------NVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVN 603 (1232)
Q Consensus 533 ~~~~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~---------~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~ 603 (1232)
..+..++... +.++ ++.++.+.+.| .+|.+ .+|.++.+...+..|+..++..+..+.++++|++||.+
T Consensus 250 ~~~~~~~~~~-~~~~-~~~~~~~~~~g-~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASI-SIAL-VAVYFGFSYLG-ELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHH-HHHH-HHHHHHHHHhc-ccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333222 2222 22334333333 34443 44555556667789999999999999999999999999
Q ss_pred HhCCCCCCcchhcc-cCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCC
Q 000904 604 FLEAPELQSMNIRQ-KGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 604 fL~~~e~~~~~~~~-~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~ 682 (1232)
+++.|+.++..... .+. . ..+.|+++|++|.|++ ++++|+|+||+|++|+++||||+||||||||+++|+|++ |
T Consensus 327 ~l~~~~~~~~~~~~~~~~-~-~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 327 FLETPLAHPQQGEKELAS-N-DPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHcCCCcccCCCccccCC-C-CCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 99876533211111 111 0 2346999999988764 358999999999999999999999999999999999999 7
Q ss_pred cccccc
Q 000904 683 TQGTIL 688 (1232)
Q Consensus 683 ~~G~v~ 688 (1232)
.+|+|.
T Consensus 402 ~~G~I~ 407 (588)
T PRK11174 402 YQGSLK 407 (588)
T ss_pred CCcEEE
Confidence 899884
No 319
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.7e-36 Score=348.21 Aligned_cols=465 Identities=20% Similarity=0.288 Sum_probs=273.2
Q ss_pred cceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccccccccccccCCCcch
Q 000904 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVST 704 (1232)
Q Consensus 625 ~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~~l~~~~~~~~~~~ 704 (1232)
...++++|++.+|+. .++|+|+||++++||.++++|.||+|||||++.|.|.++|++|++.-+.-.. ...+...
T Consensus 6 ~~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~---~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV---AFSSPRD 79 (500)
T ss_pred cceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEc---cCCCHHH
Confidence 357899999999974 5899999999999999999999999999999999999999999984332100 0000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhh-hhhhHH
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDL-DVPFSL 783 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~-~~~~~l 783 (1232)
....++..+ ..-..+ .-.+..+.++| +-+.|...|---...+.-.+...-+..+.. ..|...
T Consensus 80 A~~~GI~~V----~QEl~L-------~p~LsVaeNif------Lgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~ 142 (500)
T COG1129 80 ALAAGIATV----HQELSL-------VPNLSVAENIF------LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL 142 (500)
T ss_pred HHhCCcEEE----eechhc-------cCCccHHHHhh------cccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh
Confidence 000000000 000000 00000011110 112222111000111111111111111110 002222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchH
Q 000904 784 IFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 863 (1232)
Q Consensus 784 ~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~ 863 (1232)
..-+...-+.+..++-.......+++++.|...+...=.....+..|+++. .+.+--.+.|++.|...=...|-.+...
T Consensus 143 v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG 221 (500)
T COG1129 143 VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRLDEVFEIADRITVLRDG 221 (500)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHhcCEEEEEeCC
Confidence 222222222333344444446667788889888776666666666677653 3444444555555544322222222211
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 000904 864 DRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLP-PGTFTPGFIGMALSYGLSLNSSLVMSIQ 942 (1232)
Q Consensus 864 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~-~g~~~~g~~gl~l~~~~~l~~~l~~~v~ 942 (1232)
...-.. + .+.++.
T Consensus 222 ~~v~~~--------------------------------------------~~~~~~~~---------------------- 235 (500)
T COG1129 222 RVVGTR--------------------------------------------PTAAETSE---------------------- 235 (500)
T ss_pred EEeeec--------------------------------------------ccccCCCH----------------------
Confidence 100000 0 000110
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcccCCCCCCCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCC
Q 000904 943 NQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRT 1022 (1232)
Q Consensus 943 ~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrt 1022 (1232)
.++-+.|+. | +..+..++ + +..-+..-.++++|++.. ..++|+||++++||.+||.|=-
T Consensus 236 --~~lv~~MvG--r--~~~~~~~~-~--------~~~~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLv 294 (500)
T COG1129 236 --DELVRLMVG--R--ELEDLFPE-P--------PEEGIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLV 294 (500)
T ss_pred --HHHHHHhhC--c--chhhhccc-c--------cccCCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccc
Confidence 001111110 1 00000000 0 000001124677787642 2589999999999999999999
Q ss_pred CCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccEEEEccCCC----CCcccHHhccCCC--CCCCHH-HHHH
Q 000904 1023 GSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRFGIIPQDPT----LFNGTVRYNLDPL--SQHTDQ-EIWE 1094 (1232)
Q Consensus 1023 GSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i~iVpQdP~----LF~gTIr~NLdp~--~~~sd~-eI~~ 1094 (1232)
|||+|-++++|+|.-++.+|+|.+||.++.--+.+ ..+..|+|||-|-. +...+|++|+..- ..++.. -+..
T Consensus 295 GaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~ 374 (500)
T COG1129 295 GAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDR 374 (500)
T ss_pred cCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccCh
Confidence 99999999999999999999999999988777655 56788999999873 4466999998532 111000 0111
Q ss_pred HHHHcCCcHHHHhhc---cCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-C
Q 000904 1095 VLAKCHLGEAVREKE---NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-A 1170 (1232)
Q Consensus 1095 aL~~~~L~~~i~~~p---~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~ 1170 (1232)
.-++....+++..+. .+.+..+ .+||||-+|+++|||.|..+|+||||||||-++|.-+.+.|.+.|++.. +
T Consensus 375 ~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~ 450 (500)
T COG1129 375 RKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE 450 (500)
T ss_pred HHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC
Confidence 112222223343332 2333333 5799999999999999999999999999999999999999999999854 5
Q ss_pred CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1171 DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1171 ~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
|.+||+||-+++.+.. ||||+||.+|+++..=+.
T Consensus 451 G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 451 GKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 7999999999998885 999999999999864333
No 320
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.2e-35 Score=325.98 Aligned_cols=186 Identities=26% Similarity=0.405 Sum_probs=159.8
Q ss_pred EEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCC---CcccHHhccCCC
Q 000904 1008 CTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTL---FNGTVRYNLDPL 1084 (1232)
Q Consensus 1008 l~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~L---F~gTIr~NLdp~ 1084 (1232)
|+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.|++++|+||+|.+ |..|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357789999999976 457999997421
Q ss_pred --------CC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCC
Q 000904 1085 --------SQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153 (1232)
Q Consensus 1085 --------~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~L 1153 (1232)
.. ..++++.++++.+++.+.... ...+||+|||||++|||||+++|++|||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-----------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11 123457888998888654432 23469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1154 DNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1154 D~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|..+.+.+.+.|++.. ++.|+|++||+++.+.+ ||+|+++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998753 47899999999998876 9999999 8999999999998764
No 321
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.1e-35 Score=393.08 Aligned_cols=215 Identities=24% Similarity=0.333 Sum_probs=189.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+++...+++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.. ...+.|+++|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996444579999999999999999999999999999999999999999999999999975 5677889999
Q ss_pred EEccCCCCCc-ccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFN-GTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
++||++.+|. .|+++|+..+. ..+ ++++.+.|+.++|.+.... ...+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~-----------~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE-----------EAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999886 49999996421 112 3457788888888654332 345799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
|+.+|+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++|.++-
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999987678999999999999976 9999999999999999999997643
No 322
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.1e-35 Score=364.09 Aligned_cols=212 Identities=24% Similarity=0.402 Sum_probs=175.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEEC----------------
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVD---------------- 1047 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~ID---------------- 1047 (1232)
|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 478999999953 46999999999999999999999999999999999997 7999999997
Q ss_pred -------CeeCC-------CCC---hHhhhccEEEEccC-CCCCc-ccHHhccCC-C--CCCC----HHHHHHHHHHcCC
Q 000904 1048 -------GIDIS-------KLG---LHDLRSRFGIIPQD-PTLFN-GTVRYNLDP-L--SQHT----DQEIWEVLAKCHL 1101 (1232)
Q Consensus 1048 -------G~dI~-------~i~---l~~LR~~i~iVpQd-P~LF~-gTIr~NLdp-~--~~~s----d~eI~~aL~~~~L 1101 (1232)
|.++. ..+ ..++|++++|+||+ +.+|. .|+++|+.. . ...+ ++++.++|+.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 33331 111 23467889999998 56775 599999852 1 1122 3456778888888
Q ss_pred cHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEec
Q 000904 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAH 1179 (1232)
Q Consensus 1102 ~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAH 1179 (1232)
.+...+ ...+||||||||++|||||+.+|++|+|||||++||+++.+.+.+.|++.. .++|||+|||
T Consensus 159 ~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 654433 235799999999999999999999999999999999999999999998753 3789999999
Q ss_pred Chhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1180 RIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1180 rl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|++.+.+ ||+|++|++|++++.|++++++++
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999977 999999999999999999988764
No 323
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.3e-35 Score=317.72 Aligned_cols=173 Identities=28% Similarity=0.427 Sum_probs=147.9
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC--CChHhhhccEEEEccCC--CCCcc
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK--LGLHDLRSRFGIIPQDP--TLFNG 1075 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~--i~l~~LR~~i~iVpQdP--~LF~g 1075 (1232)
..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .....+|++++|+||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23456788999999999 57888
Q ss_pred cHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000904 1076 TVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148 (1232)
Q Consensus 1076 TIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDE 1148 (1232)
|+++|+... ...+ ++++.++++.+++.+..... ..+||+|||||++|||||+++|++|||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP-----------THCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999631 1122 24567888888886654433 35799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh
Q 000904 1149 ATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT 1183 (1232)
Q Consensus 1149 aTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t 1183 (1232)
||++||..+.+.+.+.|++.. +++|||+|||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998753 47899999999875
No 324
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-35 Score=327.13 Aligned_cols=212 Identities=25% Similarity=0.317 Sum_probs=172.2
Q ss_pred eEEEEeeEeEecC------------------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEE
Q 000904 985 KVDICDLQIRYRP------------------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILV 1046 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~------------------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~I 1046 (1232)
.|+++||...|+. ...++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4677777766643 2235899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCChHhhhccEEEEccCCCCC-cccHHhccCCC---CCCCHHHH----HHHHHHcCCcHHHHhhccCCcccccC
Q 000904 1047 DGIDISKLGLHDLRSRFGIIPQDPTLF-NGTVRYNLDPL---SQHTDQEI----WEVLAKCHLGEAVREKENGLDSLVVE 1118 (1232)
Q Consensus 1047 DG~dI~~i~l~~LR~~i~iVpQdP~LF-~gTIr~NLdp~---~~~sd~eI----~~aL~~~~L~~~i~~~p~gLdt~v~e 1118 (1232)
||. +++++|++.++ ..|+++|+... ...+.++. .++++..++.+.+ ..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cC
Confidence 993 56788888665 45999998531 12333433 3445555554433 33
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCC
Q 000904 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDG 1196 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G 1196 (1232)
.+.+||+|||||++||||++++|+||+|||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 456899999999999999999999999999999999999999999987642 47899999999999877 9999999999
Q ss_pred EEEEecChhHHHhhcCCHHHHHHH
Q 000904 1197 KLAEYDEPMKLMKREGSLFGQLVR 1220 (1232)
Q Consensus 1197 ~vvE~g~p~~Ll~~~~~~f~~l~~ 1220 (1232)
++++.|++++++++....|+.+.+
T Consensus 220 ~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 220 KLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred EEEEeCCHHHHHHHhHHHHHHHHh
Confidence 999999999999875555544444
No 325
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=5.3e-35 Score=367.14 Aligned_cols=213 Identities=28% Similarity=0.377 Sum_probs=185.2
Q ss_pred eEEEEeeEeEecCC--CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhh---
Q 000904 985 KVDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDL--- 1059 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~--~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~L--- 1059 (1232)
.++++|++++|+.+ .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred -hccEEEEccCCCCCc-ccHHhccCCC----CCC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1060 -RSRFGIIPQDPTLFN-GTVRYNLDPL----SQH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1060 -R~~i~iVpQdP~LF~-gTIr~NLdp~----~~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
|+.++|+||+|.+|+ .|+.+|++.. +.. .++++.+.++.+++.+.... .+.+||+|||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~-----------~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEY-----------QPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcC-----------CcccCCHHHHHH
Confidence 578999999999996 4999999631 111 23356677777777654433 345899999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
++|||||+++|++|+|||||++||.++.+.+.+.|++.. .+.|+|+|||+++.+..||++++|++|++++.|++++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998753 478999999999999889999999999999999999875
No 326
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9.2e-35 Score=362.96 Aligned_cols=199 Identities=26% Similarity=0.347 Sum_probs=169.7
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC--ccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-cc
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA--GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN-GT 1076 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~--~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~-gT 1076 (1232)
+.+|+|+|+++++||++||+|+||||||||+++|.|+.+|. +|+|.+||.++.. +.+++++||||++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999985 8999999998742 45678999999999985 59
Q ss_pred HHhccCCC------CCCCHHH----HHHHHHHcCCcHHHHhhccCCcccccC-CCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1077 VRYNLDPL------SQHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVE-DGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1077 Ir~NLdp~------~~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e-~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
++||+... ...++++ +.+.++..+|.+ ..|+.+++ ....||||||||++|||+|+++|+||+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999631 1223333 556676666643 34677764 367899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-hhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1146 LDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT-VMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t-i~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|||||++||..+...+.+.|++.. +++|||+++|+++. +.+ +|+|++|++|++++.|+++++.+
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999998754 58999999999984 544 99999999999999999999863
No 327
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-35 Score=315.33 Aligned_cols=188 Identities=18% Similarity=0.297 Sum_probs=160.2
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|++ +.++ ++||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++.+.. +++++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 689999999953 3445 599999999999999999999999999999999999999999999886543 456999
Q ss_pred EccCCC-CCcccHHhccCCCCC--CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000904 1066 IPQDPT-LFNGTVRYNLDPLSQ--HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1066 VpQdP~-LF~gTIr~NLdp~~~--~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
+||++. +|..|+++|+..... ..++++.++++.+++.+...+ .+.+||+|||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999985 467899999963221 145678888888888654432 346899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhhcCeEE
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMDCTMVL 1191 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~~DrVl 1191 (1232)
+|+|||||++||+.+.+.+.+.|++. .+++|+|+|||+++.+.++|-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999753 35799999999999999998763
No 328
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=4.3e-35 Score=334.65 Aligned_cols=195 Identities=19% Similarity=0.308 Sum_probs=165.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|.++|++|+|.++ +.++++++|-|..+++|++|||||+|||||++++.|.+.|+.|.|.-.-. -+++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 48999999999765 47999999999999999999999999999999999999999999875432 2445
Q ss_pred EEccCC---CCCcccHHhccCC-CC-CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc
Q 000904 1065 IIPQDP---TLFNGTVRYNLDP-LS-QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1065 iVpQdP---~LF~gTIr~NLdp-~~-~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~ 1139 (1232)
+.-|+- ...+-|.-+++.| +. ....+++...|.++||....+..|- .+||+|||.||+.||.+++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhc
Confidence 555543 3456666666654 34 3567889999999999876666554 3899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
.|.||||||||++||.+|...+.++|.+ .+++||+||||...|.. +++|.+.+||.+..++-
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCc
Confidence 9999999999999999999999999986 36789999999999988 89999999999887643
No 329
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.8e-31 Score=340.09 Aligned_cols=385 Identities=20% Similarity=0.220 Sum_probs=302.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 299 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
+.++..++.+++.+....++.++..++..+.|++++.+++.+-.... ....+.+++++++..++..+......+...+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDVA 214 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888888999999999999999999999997653221 22233444455555566666666666777888
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~g 456 (1232)
+.++...+...+|+|.++++... .+.++|++++.+ +|++.+.++... +..+...+. +++.+++++..-++.+++.
T Consensus 215 ~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 215 GKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999998765 567899999999 799999987543 233333343 3344445555445577777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
++++++.+.+..++.+...+..++.++..+++.+.+.|.++++++||.+++|+.+.++.++..++..+...+.....+..
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888889999999999999999999999999999999999999999999999988888777777776666554
Q ss_pred HHHHhHhhH--HHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 537 TFLFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 537 ~~~~~~~p~--~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
..+...... .+.++++|.+.+.++.+|.+..+..+.++..+..|+..++..+..+.+++++++|+.++++.|+.++..
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 433333222 233466788888888999999999999999999999999999999999999999999999876432211
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
....+... ..+.|+++|++|+|+.+ ++++|+|+||+|++||++||||+||||||||+++|+|+++|.+|++.-
T Consensus 452 ~~~~~~~~-~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 452 TRFLHRPR-LQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCCCCCCC-ccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 11111111 34579999999999743 458999999999999999999999999999999999999999998853
No 330
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=8e-35 Score=319.56 Aligned_cols=193 Identities=26% Similarity=0.300 Sum_probs=157.1
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
+.++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 678888998864 5699999999999999999999999999999999999999999999999876421 11111
Q ss_pred EccCCCCCcccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1066 IPQDPTLFNGTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
...+.|+++|+... ...+ ++++.++++..++.+.... ...+||||||||++||||++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDL-----------PVKTYSSGMKARLAFAIATA 158 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 12357999998521 1112 2345667777666543322 23579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
++|++|||||||++||.++.+.+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 159 ~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998753 36899999999999876 9999999999998865
No 331
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=340.10 Aligned_cols=202 Identities=22% Similarity=0.300 Sum_probs=168.9
Q ss_pred eEEEEeeEeEecCCC-CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 985 KVDICDLQIRYRPDS-PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~-~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
.++++|++++|+.+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 488999999996532 4699999999999999999999999999999999999999999999999751
Q ss_pred EEEccCCCCC-cccHHhccCCCC---CCCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLF-NGTVRYNLDPLS---QHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF-~gTIr~NLdp~~---~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
++++++.++ ..|+++|+.... ..++++ +.++++.+++.+.... .+.+||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 233344443 359999985321 233333 4567788887665433 24579999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+.+|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|+|+++..+
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999999999999999999998743 47899999999999977 999999999999999999999865
No 332
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.8e-31 Score=341.22 Aligned_cols=386 Identities=16% Similarity=0.159 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 300 VLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIG 379 (1232)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1232)
.++..++.+++.++...+..++..++..+.|++++.+++.+-..+. ....+.++++++++.++..+......+...+++
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677778888888999999999999999999987643322 122344555566666667777666777888899
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 380 LKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1232)
Q Consensus 380 ~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 458 (1232)
.++...+...+|+|.++++.....+.++|+++|.++.| +++.++.. .+..+....+.+++.+++++..=++.+++.++
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 301 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIA 301 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988777788999999999988 67877653 44445555555666666666554557777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 459 VIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTF 538 (1232)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~ 538 (1232)
.+++.+.+...+.+...+..++.++..+++.+.+.|.++++++||.+++|+.+.++..+..+++.+...+.....+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (710)
T TIGR03796 302 FAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGV 381 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888899999999999999999999999999999999999999999999998888888777666665554433
Q ss_pred HHhHhhH--HHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchh-
Q 000904 539 LFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI- 615 (1232)
Q Consensus 539 ~~~~~p~--~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~- 615 (1232)
+...... .+.++++|.+.+.++.+|.+.+++.+.++..+..|+..++..+..+.+++++++||.++++.|+-.+...
T Consensus 382 ~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 461 (710)
T TIGR03796 382 LPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEE 461 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 3322222 2345667888888899999999999999999999999999999999999999999999998754322111
Q ss_pred ---c--ccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 616 ---R--QKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 616 ---~--~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
. ..+... ..+.|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.-
T Consensus 462 ~~~~~~~~~~~~-~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 462 EAPAAGSEPSPR-LSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred cccccccccCCC-CCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 0 011011 34679999999999853 368999999999999999999999999999999999999999998853
No 333
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2e-31 Score=329.86 Aligned_cols=381 Identities=15% Similarity=0.114 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVL-AITLFVAKILESLSQRQWYFRSRLIGLKV 382 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1232)
..+.+++.++...++.++..++..+.|++++.+++.....+. ...+.+ .+++++..++..+......+...+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRS 84 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888899999999999999999987643221 111111 11122233444444444455666778888
Q ss_pred HHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 383 RSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-FHQIWTTSVQLCIALIILFHAVGLATIAALVVIM 461 (1232)
Q Consensus 383 R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~-~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~ 461 (1232)
...+...+|+|.++++....++.++|+++|.+++|++++.+.... +..+....+.+++++++++..-.+.+++.++.++
T Consensus 85 ~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 164 (529)
T TIGR02868 85 LGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLL 164 (529)
T ss_pred HHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 888889999999999887777889999999999999999987654 3334444444444544444332224444444433
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 462 ITVLCNAPL-AKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540 (1232)
Q Consensus 462 ~~~~~~~~~-~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~ 540 (1232)
++..+...+ .+..++..++..+..++..+..+|.++|+++||.|++|+.+.+++++..++..+...+.....+....+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 165 LAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333233 3444556677788889999999999999999999999999999988877766666555555554444333
Q ss_pred hHhhHH--HHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhccc
Q 000904 541 WSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1232)
Q Consensus 541 ~~~p~~--v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 618 (1232)
.....+ +.++.++.+.+.++.+|.+.+.+.+.+...+..|+..++..+..+.++++|++||.++++.++..+......
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 332222 333456777777888999999999988899999999999999999999999999999998654321111000
Q ss_pred C-CCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 619 G-NIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 619 ~-~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+ ...+..+.|+++|++|+|+++ +++|+|+||+|++||+++||||+|||||||+++|+|+++|.+|++.
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 0 000123469999999999753 4799999999999999999999999999999999999999999984
No 334
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=356.25 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=168.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~-----------~~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP-----------NERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 789999999953 4699999999999999999999999999999999999999999999997 246999
Q ss_pred EccCCCCCcc-cHHhccCCCC-----------------C----------------------CCHHHHHHHHHHcCCcHHH
Q 000904 1066 IPQDPTLFNG-TVRYNLDPLS-----------------Q----------------------HTDQEIWEVLAKCHLGEAV 1105 (1232)
Q Consensus 1066 VpQdP~LF~g-TIr~NLdp~~-----------------~----------------------~sd~eI~~aL~~~~L~~~i 1105 (1232)
+||+|.+|.+ |+++|+.... . ..++++.++|+.+++.+..
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9999988754 9998875210 0 0123455666666664322
Q ss_pred HhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhh
Q 000904 1106 REKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1106 ~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~ 1185 (1232)
.. ....+||||||||++|||||+.+|++|+|||||++||+++...+.+.|++ .++|||+||||++.+.
T Consensus 149 ~~----------~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 149 HY----------GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLN 216 (530)
T ss_pred hc----------CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHH
Confidence 11 12458999999999999999999999999999999999999999999985 4789999999999998
Q ss_pred h-cCeEEEEeCCEEE-EecChhHHHhhc
Q 000904 1186 D-CTMVLAISDGKLA-EYDEPMKLMKRE 1211 (1232)
Q Consensus 1186 ~-~DrVlVL~~G~vv-E~g~p~~Ll~~~ 1211 (1232)
+ ||+|++|++|+++ +.|++++.++.+
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 244 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMTAA 244 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHHHH
Confidence 7 8999999999995 789999887543
No 335
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.4e-31 Score=338.48 Aligned_cols=379 Identities=18% Similarity=0.207 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 305 IICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFK---YEGYVLAITLFVAKILESLSQRQWYFRSRLIGLK 381 (1232)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~---~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1232)
.+.+++.++...++.++..++..+.|++++.+++.+..+.... ...+++++..++..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888999999999999999999999886432211 1111222222223333333333444455566666
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 382 VRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVI 460 (1232)
Q Consensus 382 ~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~ 460 (1232)
+|. .+|+|.++......++..+|+++|.+++|++++.+.+ ..+..+....+++++++++++..=.+.+++.++.+
T Consensus 236 lr~----~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~ 311 (711)
T TIGR00958 236 IRE----DLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311 (711)
T ss_pred HHH----HHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 664 5566666666555566789999999999999998765 45666667777777777766654333566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 461 MITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540 (1232)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~ 540 (1232)
++.+.+...+.+..++..++.++..++..+...|.+++|++||.|++|+.+.+++++..++-.+..+|.....+....+.
T Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777888888888899999999999999999999999999999999777776655543333333332222222111
Q ss_pred hHh--hHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhccc
Q 000904 541 WSS--PVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1232)
Q Consensus 541 ~~~--p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 618 (1232)
... -..+.++.+|.+.+..+.+|.+.+.+.+.++..+..|+..++.....+.+++++.+||.+|++.++..+......
T Consensus 392 ~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~ 471 (711)
T TIGR00958 392 SVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLA 471 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 111 122344567778788899999999999999999999999999999999999999999999998754332211111
Q ss_pred CCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 619 GNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 619 ~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
+. +..+.|+++|++|+|++++++++|+|+||+|++||+++|||+||||||||+++|+|+++|.+|+|.-
T Consensus 472 ~~--~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 472 PL--NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CC--CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 21 1345799999999998655578999999999999999999999999999999999999999998853
No 336
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-34 Score=384.13 Aligned_cols=215 Identities=20% Similarity=0.240 Sum_probs=187.4
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..|+++|++++|+.....+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +.++.|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 3599999999997433569999999999999999999999999999999999999999999999999965 456788899
Q ss_pred EEEccCCCCCc-ccHHhccCCCC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
||+||++.++. -|++||+..+. ..+ ++.+.++|+.++|.+...+. ...||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-----------~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-----------AGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHH
Confidence 99999998886 59999986421 122 23456788888887654433 2479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
||+.+|+||+|||||++||+.+.+.+.+.|++. .+++|||++||+++.+.. ||||++|++|+++..|++++|.++
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999999874 357899999999999987 999999999999999999999654
No 337
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.7e-34 Score=333.49 Aligned_cols=185 Identities=27% Similarity=0.396 Sum_probs=159.4
Q ss_pred EECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcc-cHHhccCCC---CCCC----H
Q 000904 1018 IVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRYNLDPL---SQHT----D 1089 (1232)
Q Consensus 1018 IVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~g-TIr~NLdp~---~~~s----d 1089 (1232)
|+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|+||++.+|.+ |+++|+... ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987654 36789999999999965 999999632 1122 2
Q ss_pred HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 000904 1090 QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF 1169 (1232)
Q Consensus 1090 ~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~ 1169 (1232)
+++.++++.+++.+...+. ..+||||||||++|||||+++|++|+|||||++||..+.+.+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 4567788888876554433 35799999999999999999999999999999999999999999998754
Q ss_pred C--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcCCHH
Q 000904 1170 A--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1170 ~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++...|
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 2 7899999999999876 99999999999999999999998766544
No 338
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.6e-34 Score=285.64 Aligned_cols=226 Identities=26% Similarity=0.360 Sum_probs=179.4
Q ss_pred EEEEeeEeEec-------CCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHh
Q 000904 986 VDICDLQIRYR-------PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 986 I~~~nvs~~Y~-------~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~ 1058 (1232)
++++|++..|+ ...-.+.+.|||++++|+.+||+|.||||||||+++|.|+++|++|+|.+||..+.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 45666654442 12234789999999999999999999999999999999999999999999999887666666
Q ss_pred hhccEEEEccCCC-CC----------cccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhH
Q 000904 1059 LRSRFGIIPQDPT-LF----------NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQ 1127 (1232)
Q Consensus 1059 LR~~i~iVpQdP~-LF----------~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQ 1127 (1232)
.-++|-+|+|||. -| ++.++-|-+.-.+...++|.+-|+.+||...-... .+..||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchh
Confidence 6678999999993 23 33333333322234456799999999986433322 245799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH--hcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecCh
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRA--EFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEP 1204 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~--~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p 1204 (1232)
|||+||||||+-+|+|+|-|||-++||..-...+.+..-+ +..|-.-|.|+.++..++. +|.|+||++|+++|+|++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 9999999999999999999999999999887777665432 3347899999999999998 999999999999999999
Q ss_pred hHHHhhcCC-HHHHHHHH
Q 000904 1205 MKLMKREGS-LFGQLVRE 1221 (1232)
Q Consensus 1205 ~~Ll~~~~~-~f~~l~~~ 1221 (1232)
.+++.+|.. .=++|++.
T Consensus 235 ~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 235 ADVLASPLHELTKRLIES 252 (267)
T ss_pred hhhhcCCccHHHHHHHHH
Confidence 999988753 34455543
No 339
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.1e-31 Score=334.27 Aligned_cols=384 Identities=17% Similarity=0.173 Sum_probs=297.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 299 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
.+++..++.+++.++...++.++..++..+.|++++.+++.+-.... ...-+.+++++++..++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566567788888889999999999999999999999987753221 22234455556666666667666667778889
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~g 456 (1232)
+.++...+...+|+|.++++.....+.++|+++|.++ |++.+.+++.. +..+...++ +++++++++..-++.+++.
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777889999999997 89998876543 233333333 3344555555445577777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
++++++.+.+..++.+.+.+..++.++..+++.+...|.++||++||.++.|+.+.++.++.-++..+...|........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888999999999999999999999999999999999999999988887776665555555554444443
Q ss_pred HHHHhHhhHH--HHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 537 TFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 537 ~~~~~~~p~~--v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
..+......+ +.++.+|.+...++.+|.+.++++..++..+..|+..++..+..+.+++++++||.++++.|+-.+..
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 3332222222 33455677777788999999999999999999999999999999999999999999999875422111
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
...+. . ..+.|+++|++|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+++|.+|+|.-
T Consensus 442 -~~~~~-~-~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 442 -KTDPG-K-LSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred -cCCCC-C-CCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 01111 1 34579999999999753 368999999999999999999999999999999999999999999843
No 340
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-34 Score=332.18 Aligned_cols=206 Identities=26% Similarity=0.356 Sum_probs=175.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhh-ccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR-SRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1063 (1232)
-++++|++.+|++ -++|+||||++++||.+|++|.||||||||+|.|.|.|+|++|+|.+||....-.++.+-+ .-|
T Consensus 8 ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 4889999999974 3699999999999999999999999999999999999999999999999999877776654 579
Q ss_pred EEEccCCCCCc-ccHHhccCCCC-------CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1064 GIIPQDPTLFN-GTVRYNLDPLS-------QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1064 ~iVpQdP~LF~-gTIr~NLdp~~-------~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
++|.||+.|+. -||.+||-... -.+. ++..++|++.++. ...++.|+ +||+||||.+
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v~----~LsiaqrQ~V 154 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLVG----DLSIAQRQMV 154 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhhh----hCCHHHHHHH
Confidence 99999999985 59999994222 1232 3445566666554 12455554 6999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
.||||+..++||||||||||+|+...-+.+.+.+++.. +|.++|+||||++.|.+ ||||.||.||+.+...+
T Consensus 155 eIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 155 EIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999888888888888754 58899999999999988 99999999999987666
No 341
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.2e-34 Score=358.56 Aligned_cols=200 Identities=23% Similarity=0.320 Sum_probs=172.6
Q ss_pred CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-
Q 000904 999 SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN- 1074 (1232)
Q Consensus 999 ~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~- 1074 (1232)
.+++|+|+|+++++||.+||+|+||||||||+++|.|..+|. +|+|.+||.+++ ..++|++++||||++.++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 457999999999999999999999999999999999999885 799999999875 3578899999999999885
Q ss_pred ccHHhccCC---CC---CCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCC--CCCCChhHHHHHHHHHHHccCCC
Q 000904 1075 GTVRYNLDP---LS---QHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVED--GSNWSMGQRQLFCLGRALLRRSR 1142 (1232)
Q Consensus 1075 gTIr~NLdp---~~---~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~--G~nLSgGQRQrl~LARALL~~~k 1142 (1232)
.||||||.. .. ..+ ++++.+.++..++. +..|+.+++. +..||||||||++|||+|+.+|+
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~ 186 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-------KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP 186 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-------hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence 599999952 11 112 23466777777664 3568889874 47899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-hh-hhcCeEEEEeCCEEEEecChhHHH
Q 000904 1143 ILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIP-TV-MDCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1143 ILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~-ti-~~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
||+|||||++||+.+...+.+.|++.. +++|+|+++|+++ .+ ..+|+|++|++|+++++|+++++.
T Consensus 187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 999999999999999999999999854 4799999999985 44 459999999999999999999884
No 342
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.3e-34 Score=351.17 Aligned_cols=211 Identities=23% Similarity=0.286 Sum_probs=165.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
-|+++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.+++
T Consensus 6 ~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 24799
Q ss_pred EEccCCCCCcc-cHHhccCCC-C----------------CCC----------HHHHHHHHHHcCCcHH---HHhh--ccC
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPL-S----------------QHT----------DQEIWEVLAKCHLGEA---VREK--ENG 1111 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~-~----------------~~s----------d~eI~~aL~~~~L~~~---i~~~--p~g 1111 (1232)
|+||+|.+++. |+++|+... . ... .+++.+.++.++.++. +... ..|
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 99999998865 999998521 0 000 0112222222221110 1000 012
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV 1190 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV 1190 (1232)
++ .......+||||||||++||||++.+|++|||||||++||+++.+.+.+.|++. +.|||+|||+++.+.. ||+|
T Consensus 154 l~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 154 CP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred CC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeE
Confidence 32 123345689999999999999999999999999999999999999999999874 3699999999999987 8999
Q ss_pred EEEeCCEEE-EecChhHHHhh
Q 000904 1191 LAISDGKLA-EYDEPMKLMKR 1210 (1232)
Q Consensus 1191 lVL~~G~vv-E~g~p~~Ll~~ 1210 (1232)
++|++|+++ ..|++++..+.
T Consensus 231 ~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred EEEeCCEEEEecCCHHHHHHH
Confidence 999999987 66888876553
No 343
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.4e-30 Score=322.46 Aligned_cols=374 Identities=18% Similarity=0.125 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 309 WRDIFMSGFFALLKVLTLSAGPLLLNAFILVTE-GKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLT 387 (1232)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~ 387 (1232)
|+.++...++.++..++..+.|++++.+++.+. ++. ....-+.+++.+++..++..+......+...+++.++...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999999999999773 322 112223344445555556666666666777788888888888
Q ss_pred HHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000904 388 AAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIMITVL 465 (1232)
Q Consensus 388 ~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~~~~~ 465 (1232)
..+|+|.++++.....+.++|+++|.+++|++++.++.. .+..+....+..++++++++.. +| .+++.++.+++...
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPA-DWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 889999999887777778999999999999999998654 4566665555555555544432 33 33333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 000904 466 CNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPV 545 (1232)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~ 545 (1232)
+...+.++..+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+.-++..+...+.....+....+......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777878888889999999999999999999999999999998887765443333222222222222222111111
Q ss_pred HHH--HHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCC
Q 000904 546 LVS--TATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIEN 623 (1232)
Q Consensus 546 ~v~--~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~ 623 (1232)
+.. ++.++.+.+..+.+|.+.+++.+.+...+..|+..+...+..+.+++++++||.++++.++.+.... ..+. .
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~~-~- 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVTA-A- 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCCC-C-
Confidence 111 1223444445778999999999999999999999999999999999999999999998543221111 1111 1
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|.+|++.
T Consensus 317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 22479999999999753 35899999999999999999999999999999999999999999884
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-33 Score=350.17 Aligned_cols=211 Identities=24% Similarity=0.319 Sum_probs=172.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
-++++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ +.+++
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48899999999622 4699999999999999999999999999999999999999999999985 25799
Q ss_pred EEccCCCCCc-ccHHhccCC-CC-----------------CC-C--------HHHHHHHHHHcCCcHHHHh---h--ccC
Q 000904 1065 IIPQDPTLFN-GTVRYNLDP-LS-----------------QH-T--------DQEIWEVLAKCHLGEAVRE---K--ENG 1111 (1232)
Q Consensus 1065 iVpQdP~LF~-gTIr~NLdp-~~-----------------~~-s--------d~eI~~aL~~~~L~~~i~~---~--p~g 1111 (1232)
|+||+|.++. .|+++|+.. .. .. . .+++.++++.++.++.... . ..|
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 9999999885 499999852 10 01 1 1346666777775532111 1 123
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV 1190 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV 1190 (1232)
++. ......+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++. ++|||+||||++.+.+ ||+|
T Consensus 152 l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 152 CPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred CCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeE
Confidence 321 24456789999999999999999999999999999999999999999999874 4699999999999988 8999
Q ss_pred EEEeCCEEE-EecChhHHHhh
Q 000904 1191 LAISDGKLA-EYDEPMKLMKR 1210 (1232)
Q Consensus 1191 lVL~~G~vv-E~g~p~~Ll~~ 1210 (1232)
++|++|+++ ..|++++.++.
T Consensus 229 ~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred EEEECCEEEEecCCHHHHHHH
Confidence 999999976 56888876654
No 345
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.3e-34 Score=314.60 Aligned_cols=193 Identities=23% Similarity=0.279 Sum_probs=157.6
Q ss_pred eEecCCCCccceeeeEEEe-----CCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc
Q 000904 993 IRYRPDSPLVLKGISCTFE-----GGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP 1067 (1232)
Q Consensus 993 ~~Y~~~~~~vL~~vsl~I~-----~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp 1067 (1232)
|+|++. ...++|++++++ +||.+||+|+||||||||+++|.|+++|++|+|.+||. +++|+|
T Consensus 1 ~~y~~~-~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTM-KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCccc-ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 456533 347788888876 79999999999999999999999999999999999984 699999
Q ss_pred cCCC-CCcccHHhccCCCCC-C--CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000904 1068 QDPT-LFNGTVRYNLDPLSQ-H--TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRI 1143 (1232)
Q Consensus 1068 QdP~-LF~gTIr~NLdp~~~-~--sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kI 1143 (1232)
|++. .+.+|+++|+..... . ..+...++++.+++.+... ....+||||||||++|||||+++|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9997 578999999853211 1 1233566777777654332 23457999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE--EecChhHHHh
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA--EYDEPMKLMK 1209 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv--E~g~p~~Ll~ 1209 (1232)
++|||||++||.++...+.+.|++.. .++|||+|||+++.+.. ||+|++|+++..+ ..++|..+.+
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 99999999999999999999998753 37899999999999986 9999999775444 5677877653
No 346
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.8e-30 Score=329.89 Aligned_cols=380 Identities=20% Similarity=0.132 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 302 RTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLK 381 (1232)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1232)
...++.+++.++...+..++..++..+.|++++.+++.+-... ....-+.+++++++..++..++.....+...+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (708)
T TIGR01193 148 IPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQR 226 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888899999999999999999998764322 111223344444455555666555556677788889
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 382 VRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF--HQIWTTSVQLCIALIILFHAVGLATIAALVV 459 (1232)
Q Consensus 382 ~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~--~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~ 459 (1232)
+...+...+|+|.+++.....++.++|+++|.++ |.+++.++.... ..+...+ .+++.+++++..-++.+++.+++
T Consensus 227 ~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~li~l~~ 304 (708)
T TIGR01193 227 LSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMW-ILVIVGLFLVRQNMLLFLLSLLS 304 (708)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999988777889999999998 999998865422 2222233 33344444444333456666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 000904 460 IMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK----AY 535 (1232)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~----~~ 535 (1232)
+++.+.+...+.+..++..++.++..+++.+...|.++||++||.+++|+.+.++.++..++..+.-.+..... +.
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (708)
T TIGR01193 305 IPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAI 384 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788899999999999999999999999999999999999999998887765554444333333332 22
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchh
Q 000904 536 NTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1232)
Q Consensus 536 ~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 615 (1232)
..++.... .+.++++|.+.+..+.+|.+.+++...++..+..|+..+...+..+.+++++++||.++++.|+-.+...
T Consensus 385 ~~~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 462 (708)
T TIGR01193 385 KAVTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK 462 (708)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 22222222 2445678888888999999999999999999999999999999999999999999999997654222111
Q ss_pred cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 616 RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 616 ~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
...+... ..+.|+++|++|+|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.-
T Consensus 463 ~~~~~~~-~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 463 KRTELNN-LNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccCCCC-CCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 1011111 3457999999999973 358999999999999999999999999999999999999999999853
No 347
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-34 Score=277.56 Aligned_cols=219 Identities=23% Similarity=0.349 Sum_probs=185.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCe--eCCCCC----hHh
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGI--DISKLG----LHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~--dI~~i~----l~~ 1058 (1232)
.|+++|+++.|+. ..+|.||+++-+.||.+.+.||||+|||||++.|.=+--|.+|+..|.|. |.++.+ ..+
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 3789999999964 46999999999999999999999999999999999898999999999773 555543 668
Q ss_pred hhccEEEEccCCCCCcc-cHHhccC--CCC--CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 LRSRFGIIPQDPTLFNG-TVRYNLD--PLS--QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~g-TIr~NLd--p~~--~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
||+.+|+|+|...|... ||-+||- |.. ..++ .+..+.|++..|.++.++.|- .|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl-----------hlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL-----------HLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce-----------ecccchhh
Confidence 99999999999988854 9999983 322 1233 345677888888888777764 69999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|++|||||..+|++|++||||++||++-.+.+-+.|++... |-|-++|||..+..+. +.+|+.|++|+|+|.|+..-.
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999998543 7799999999999987 899999999999999997665
Q ss_pred HhhcCCHHH
Q 000904 1208 MKREGSLFG 1216 (1232)
Q Consensus 1208 l~~~~~~f~ 1216 (1232)
-+.+...|+
T Consensus 229 t~p~te~f~ 237 (242)
T COG4161 229 TEPQTEAFK 237 (242)
T ss_pred cCccHHHHH
Confidence 433333443
No 348
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.8e-33 Score=286.78 Aligned_cols=143 Identities=31% Similarity=0.497 Sum_probs=134.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++|++++|.. .++++++||++++||.++|+|+||||||||+++|.|+++|++|+|.+||. .+++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 468999999964 36999999999999999999999999999999999999999999999994 47999
Q ss_pred EccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000904 1066 IPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILI 1145 (1232)
+|| ||+|||||++||||++++|++++
T Consensus 68 ~~~------------------------------------------------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 68 FEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred Ecc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1146 LDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
|||||++||.++...+.+.|++. ++|+|++||+++.+.. ||++++|++||
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999875 5799999999999977 89999999986
No 349
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=310.71 Aligned_cols=231 Identities=22% Similarity=0.326 Sum_probs=192.4
Q ss_pred eEEEEeeEeEec--CCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCChH
Q 000904 985 KVDICDLQIRYR--PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----AGGKILVDGIDISKLGLH 1057 (1232)
Q Consensus 985 ~I~~~nvs~~Y~--~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----~~G~I~IDG~dI~~i~l~ 1057 (1232)
-++++|+++.|. .+...++|||||+|++||++|+||+||||||--.++++|+++- .+|+|.+||.|+-..+-+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 478999999985 3345689999999999999999999999999999999999974 379999999999888877
Q ss_pred hhhc----cEEEEccCCCC-Ccc--cHHhcc----CC----CCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCC
Q 000904 1058 DLRS----RFGIIPQDPTL-FNG--TVRYNL----DP----LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSN 1122 (1232)
Q Consensus 1058 ~LR~----~i~iVpQdP~L-F~g--TIr~NL----dp----~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~n 1122 (1232)
++|. +|++|+|||.- .+. ||-..+ .. ....-.+++.+.|+.+|+.+--..+ ..-+++
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--------~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL--------DAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh--------hhCCcc
Confidence 7764 89999999952 111 333222 10 1122356788899999997643332 234679
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1123 WSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1123 LSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
||||||||+.||-||+.+|++||-||||.+||....+.|.+.|++.- .+..+++||||+..|+. +|||.||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999988743 37899999999999998 9999999999999
Q ss_pred EecChhHHHhhcCCHHHHHHHHHH
Q 000904 1200 EYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1200 E~g~p~~Ll~~~~~~f~~l~~~~~ 1223 (1232)
|.|+.++|++++...|.++.-+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~ae 261 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAE 261 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcC
Confidence 999999999999998988766543
No 350
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.5e-30 Score=322.35 Aligned_cols=387 Identities=17% Similarity=0.189 Sum_probs=283.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 300 VLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIG 379 (1232)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1232)
.++..++.+++.+.+..++.++..++..+.|+++..+++.+-.+.... .-..+++.+++..++..+......+...+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSG-LLNRYFAFLLVVALVLALGTAARFYLVTWLG 86 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778888888999999999999999999999732222111 1112222233333444444455567778889
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 380 LKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1232)
Q Consensus 380 ~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 458 (1232)
.++...+...+|+|.++.+.....+.+.|+++|.+++|++++.++. ..+..+....+.+++++++++..-.+.+++.++
T Consensus 87 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 166 (576)
T TIGR02204 87 ERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL 166 (576)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999998776677889999999999999998865 344444445555555555444433333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 459 VIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTF 538 (1232)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~ 538 (1232)
.+++.+.+...+.+.+.+..++.++..++..+...|.++|+++||.+++|+.+.++.++..++..+...+.....+....
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (576)
T TIGR02204 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTA 246 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556788888889999999999999999999999999999999998888877666555444443333322222
Q ss_pred HHhH--hhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCC-Ccchh
Q 000904 539 LFWS--SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPEL-QSMNI 615 (1232)
Q Consensus 539 ~~~~--~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~-~~~~~ 615 (1232)
+... .-..+..+.+|.+.+..+.+|.+.+++...++..+..|+..++..+..+.+++++++||.++++.++. +....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 2111 12234445577777788899999999999999999999999999999999999999999999986542 21110
Q ss_pred cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 616 RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 616 ~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
....... ..+.|+++|++|+|+.++++++|+|+||+++|||+++|+|++|||||||+++|+|+++|.+|++.
T Consensus 327 ~~~~~~~-~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 327 PKTLPVP-LRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred CccCCcC-CCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 0111101 23569999999999864446899999999999999999999999999999999999999999874
No 351
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.9e-34 Score=316.85 Aligned_cols=203 Identities=21% Similarity=0.289 Sum_probs=162.4
Q ss_pred EeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEE-----------ECCeeCCCCChH
Q 000904 989 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL-----------VDGIDISKLGLH 1057 (1232)
Q Consensus 989 ~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~-----------IDG~dI~~i~l~ 1057 (1232)
.||+++|+++ .++|+|+| .+++||++||+|+||||||||+++|.|+++|++|+|. +||+++.+....
T Consensus 4 ~~~~~~y~~~-~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 3788999643 35999999 4999999999999999999999999999999999996 889888765333
Q ss_pred hhhc--cEEEEccCCCCCc----ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHH
Q 000904 1058 DLRS--RFGIIPQDPTLFN----GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLF 1131 (1232)
Q Consensus 1058 ~LR~--~i~iVpQdP~LF~----gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl 1131 (1232)
..|. ++++++|++.++. +++++|+.. ...++++.++++.+++.+... ..+.+||+|||||+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv 148 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK--KDERGKLDELVDQLELRHVLD-----------RNIDQLSGGELQRV 148 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhch--hHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 2332 4788888776554 566666532 123456788888887765433 34468999999999
Q ss_pred HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE---ecChhH
Q 000904 1132 CLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE---YDEPMK 1206 (1232)
Q Consensus 1132 ~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE---~g~p~~ 1206 (1232)
+||||++++|++++|||||++||..+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ |++++ +|.|..
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~~~~~~~~ 227 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYGVVTLPKS 227 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcceeeecCcc
Confidence 99999999999999999999999999999999998754 37899999999999986 99999995 65654 345554
Q ss_pred H
Q 000904 1207 L 1207 (1232)
Q Consensus 1207 L 1207 (1232)
.
T Consensus 228 ~ 228 (255)
T cd03236 228 V 228 (255)
T ss_pred H
Confidence 3
No 352
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.1e-30 Score=320.65 Aligned_cols=383 Identities=16% Similarity=0.202 Sum_probs=296.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 302 RTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLK 381 (1232)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1232)
..+++.+++.++++.++.++..++....|+++..+++..-.... ...-+.+++.+++..++..+......+...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNK 84 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999998875543221 11122223334344444555444455567777888
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 382 VRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVI 460 (1232)
Q Consensus 382 ~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~ 460 (1232)
+-..+...+|+|.++.+....++.+.|+++|.++.|++++.++.. .+..++...+.+++++++++..=++.+++.++++
T Consensus 85 ~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~ 164 (571)
T TIGR02203 85 VVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVML 164 (571)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888888888999999888777788999999999999999988654 5666666666777777776664334666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 461 MITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF 540 (1232)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~ 540 (1232)
++.+.+...+.+..++..++..+..+++.+.++|+++|+++||.++.|+.+.++.++..++..+...+.....+....+.
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (571)
T TIGR02203 165 PVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPIT 244 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778889999999999999999999999999999999999999999888888777766665555544444433333
Q ss_pred hHhhH--HHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhccc
Q 000904 541 WSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1232)
Q Consensus 541 ~~~p~--~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 618 (1232)
..... .+.++.+|.+.+..+.+|++.+++++.++..+..|+..+......+.+++++++||.++++.++..+.... .
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~ 323 (571)
T TIGR02203 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-A 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-C
Confidence 32222 23345677777788999999999999999999999999999999999999999999999987544322111 1
Q ss_pred CCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 619 GNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 619 ~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
.. . ..+.|+++|++|+|+++ ++++|+|+||++++||+++|+|++|||||||+++|+|.++|.+|.|.-
T Consensus 324 ~~-~-~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i 391 (571)
T TIGR02203 324 IE-R-ARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391 (571)
T ss_pred CC-C-CCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 11 1 23569999999999754 458999999999999999999999999999999999999999999853
No 353
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-34 Score=288.48 Aligned_cols=218 Identities=24% Similarity=0.395 Sum_probs=189.0
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++||+.+|. ...|++++|++|++|...+|+||||+|||||+..+.||.++++|+|.|||.|+.+.+-++|.+++++
T Consensus 2 I~i~nv~K~y~--~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYG--TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhC--CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 67899999996 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCC-cccHHhccC----CCCC--C---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1066 IPQDPTLF-NGTVRYNLD----PLSQ--H---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLd----p~~~--~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
.-|+..+- .-|||+-+. |+.+ . +...|.+|++-.+|.+.-.+. | .+||||||||--+|-
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry---L--------d~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY---L--------DELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh---H--------Hhcccchhhhhhhhe
Confidence 99998754 559997664 3321 1 223478899988887654432 2 369999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhcC
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
.+.++.+-++||||-++||......+++.+|+.. -++|+++|-||+++... +|.|+.|.+|+++..|+|+|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~-- 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP-- 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH--
Confidence 9999999999999999999999989999988743 37999999999999987 799999999999999999999975
Q ss_pred CHHHHH
Q 000904 1213 SLFGQL 1218 (1232)
Q Consensus 1213 ~~f~~l 1218 (1232)
+..+++
T Consensus 227 ~~L~ei 232 (252)
T COG4604 227 EILSEI 232 (252)
T ss_pred HHHHHH
Confidence 344443
No 354
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.2e-30 Score=320.99 Aligned_cols=365 Identities=18% Similarity=0.191 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 000904 320 LLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSN 399 (1232)
Q Consensus 320 l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~ 399 (1232)
++..++..+.|++++.+++.+..........+.+++.+++..++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 45556677889999999987653321112233344445555555555555555666678888888899999999999988
Q ss_pred hhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 400 AARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIMITVLCNAPLAKLQHKF 477 (1232)
Q Consensus 400 ~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~~~~~~~~~~~~~~~~~ 477 (1232)
....++++|+++|.+++|++++.... ..+..++..++..++++++++..++| .+++.++++++.+.+...+.+...+.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777899999999999999998664 34566666666666666655555676 55666666666666677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHH
Q 000904 478 QTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSP--VLVSTATFGAC 555 (1232)
Q Consensus 478 ~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p--~~v~~~tf~~~ 555 (1232)
.++..+..++..+..+|.++++++||.|++|+.+.++..+.-++..+...+.....+....+..... ..+.++.+|.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999999999999998877766444333333333333222221111111 12334556778
Q ss_pred HHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEeeEE
Q 000904 556 YFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASF 635 (1232)
Q Consensus 556 ~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~~sf 635 (1232)
.+.++.+|.+.+++.+.++..+..|+..++..+..+.++++|.+||.++++.++..+......+ . .++.|+++|++|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~--~-~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVP--E-GRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCC--C-CCCcEEEEEEEE
Confidence 7888899999999999999999999999999999999999999999999986542211111111 1 235699999999
Q ss_pred EecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 636 SWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 636 sw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+|+.+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|.+|++.
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~ 373 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR 373 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence 99753 35899999999999999999999999999999999999999999874
No 355
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.2e-29 Score=314.33 Aligned_cols=385 Identities=25% Similarity=0.264 Sum_probs=315.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 297 QPSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSR 376 (1232)
Q Consensus 297 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (1232)
+.+.++..++-+++.+.-..+..++..++..+.|++.+.++|.+--.. ....=.++++++.+..+++.+...--.|...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~-~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA-SRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677778888888888999999999999999999998875433 2334566777788888888887777778888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 000904 377 LIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCI---ALIILFHAVGLAT 453 (1232)
Q Consensus 377 ~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~---~~~~L~~~lG~~~ 453 (1232)
+++.|+...+...+|++.|+++.....++++|++++.+ .|.+.|.+++..-- -+.++.+.+ .+.+++.+=++.+
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~--l~~iiD~~~~~i~l~vm~~ys~~L~ 296 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSI--LTLIIDLLFALIFLAVMFLYSWKLT 296 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998889999999998 57999988764322 123333333 3334455446688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 454 IAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1232)
Q Consensus 454 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~ 533 (1232)
+++++.+++.+.+..++.+.+++..++.++...++-+...|.++||++||..+-|+.|..+.++.=.+..+.-.|.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998887777777766666665
Q ss_pred HHHHHHHhHhhHH--HHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCC-
Q 000904 534 AYNTFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPEL- 610 (1232)
Q Consensus 534 ~~~~~~~~~~p~~--v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~- 610 (1232)
.....+......+ +.+++||++.++.+.+|.|..++..++..-...|+..+......+.+++++.+|+.+.++.|.-
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 5544333322222 4568899999999999999999999999999999999999999999999999999999987543
Q ss_pred Ccchh-cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 611 QSMNI-RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 611 ~~~~~-~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
+.+.. ...+ ..++.|+++|++|+|+.+++ ++|+|+||+|++||++||||+||||||||++.++|.++|.+|+|.-
T Consensus 457 ~~~~~~~~~~---~~~g~I~~~nvsf~y~~~~~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~ 532 (709)
T COG2274 457 EGDKTLIHLP---KLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532 (709)
T ss_pred cccccccccc---ccCceEEEEEEEEEeCCCCc-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 22221 1122 15688999999999987643 8999999999999999999999999999999999999999999843
No 356
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.1e-30 Score=318.75 Aligned_cols=370 Identities=17% Similarity=0.116 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 307 CYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLL 386 (1232)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l 386 (1232)
.+++.++...++.++..++..+.|++++.+++.+-.... ...-+.+++.+++..++..++.....+...+.+.++...+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788888899999999999999999986542221 1223444555666666677777777778888999999999
Q ss_pred HHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 387 TAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITV 464 (1232)
Q Consensus 387 ~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~ 464 (1232)
...+|+|.++++.. ..+...+.+++|++++.++... +..+...++.++.. ++++..-.+.+++.++.+++.+
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999988752 2355678889999999886543 33344444433332 2333322333343333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 000904 465 LCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSP 544 (1232)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p 544 (1232)
.+.....+..++..++.++..+++.+.++|.++|+++||.|++|+.+.+++++..++..+...+.....+....+.....
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677788888899999999999999999999999999999999999888777666555555444444333222222
Q ss_pred --HHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCC
Q 000904 545 --VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIE 622 (1232)
Q Consensus 545 --~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~ 622 (1232)
..+.++++|.+...++.+|++.+++++.++..+..|+..++.....+.++++|++||.++++.++..+... ..+ .
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~--~ 312 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLP--E 312 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCC--C
Confidence 22345667888888899999999999999999999999999999999999999999999997654322111 111 1
Q ss_pred CCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 623 NVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 623 ~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.++.|+++|++|+|+++ ++++|+|+||++++||+++|+|++|||||||+++|+|+++|.+|++.
T Consensus 313 -~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 313 -PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred -CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 33579999999999743 35899999999999999999999999999999999999999999874
No 357
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-29 Score=316.98 Aligned_cols=382 Identities=14% Similarity=0.141 Sum_probs=285.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 303 TIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKV 382 (1232)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1232)
.+++.+++.++...+..++..++..+.|++++.+++.+.++... .....++..+++..++..++.....+...+++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 18 PTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777778888888888999999998876543211 11122233333344445555444555667788888
Q ss_pred HHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 383 RSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIM 461 (1232)
Q Consensus 383 R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~ 461 (1232)
...+...+|+|.++++.....+.+.|++++.++.|++++.+.. ..+..+...++.+++.+++++..-++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998887778899999999999999998754 345556667777777777766654446666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000904 462 ITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFW 541 (1232)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~ 541 (1232)
+.+.+...+.+.+++..++.++..++..+...|.++|+++||.|++|+.+.++.++.-++-.+...|.....+....+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778888888999999999999999999999999999999999988888776555444433333333332222221
Q ss_pred Hhh--HHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccC
Q 000904 542 SSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKG 619 (1232)
Q Consensus 542 ~~p--~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 619 (1232)
... ..+.++.++.+....+.++.+.+..+++++..+..|+..+......+.+++.+++||.++++.++.++..... .
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~-~ 335 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRV-I 335 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcC-C
Confidence 111 2234456667777778999999998888899999999999999999999999999999999876432211111 1
Q ss_pred CCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 620 NIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 620 ~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
. . ..+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.-
T Consensus 336 ~-~-~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i 402 (582)
T PRK11176 336 E-R-AKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL 402 (582)
T ss_pred C-C-CCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence 1 1 23469999999999753 468999999999999999999999999999999999999999999843
No 358
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=322.14 Aligned_cols=213 Identities=22% Similarity=0.392 Sum_probs=172.5
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeC-CCCChHhhh-c
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDI-SKLGLHDLR-S 1061 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI-~~i~l~~LR-~ 1061 (1232)
-.++++|+++.-+.+ -..+++|||++++||.+||.|-.|-|-+-|+.+|.|+.+|.+|+|.++|.|+ ...+..+.| .
T Consensus 256 ~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 256 VVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 358999999875433 3579999999999999999999999999999999999999999999999997 677777766 5
Q ss_pred cEEEEccCCC----CCcccHHhccCC-------CCC---CCHHHHHHHHHHcCCcHHHHh---hccCCcccccCCCCCCC
Q 000904 1062 RFGIIPQDPT----LFNGTVRYNLDP-------LSQ---HTDQEIWEVLAKCHLGEAVRE---KENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1062 ~i~iVpQdP~----LF~gTIr~NLdp-------~~~---~sd~eI~~aL~~~~L~~~i~~---~p~gLdt~v~e~G~nLS 1124 (1232)
.++|||.|.. ..+-|+.+|+-+ |.. .+..++.+..++ .+++ .+.+.++++ .+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~a----~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAPA----RSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcch----hhcC
Confidence 6999999984 457799999843 211 122333332221 1221 123333333 5799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
||+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|+.||-+++.+.. ||||.||.+|+++...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 999999999999999999999999999999999999988887754 58899999999999988 9999999999999877
Q ss_pred ChhH
Q 000904 1203 EPMK 1206 (1232)
Q Consensus 1203 ~p~~ 1206 (1232)
+|++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 7765
No 359
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=8.9e-33 Score=315.54 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=174.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChH-hhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLH-DLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~-~LR~~i 1063 (1232)
.++++|++.+|+ .-.+++||||+|++||..|+.|+||+|||||++.|+|+|+|++|+|.+||+.++--++. .+|..|
T Consensus 4 ~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 489999999997 34689999999999999999999999999999999999999999999999998766555 467889
Q ss_pred EEEccCCCCCcc-cHHhccCCCCCC------C----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQH------T----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~~------s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
|+|.|++.|++. |+.||+-...+. + .+++.+..++.|| |-.+|..| ..||.|||||+-
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl-------~vdp~~~V----~dLsVG~qQRVE 150 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGL-------PVDPDAKV----ADLSVGEQQRVE 150 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCC-------CCCcccee----ecCCcchhHHHH
Confidence 999999999966 999999643321 2 2345555554443 23344444 469999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
|-+||++++++||||||||-|-+..-+.+.+++++.. .|+|||+|||+++.++. ||||-||.+||++..-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999988888888888754 58999999999999998 99999999999885544
No 360
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=5.1e-33 Score=302.62 Aligned_cols=183 Identities=21% Similarity=0.288 Sum_probs=149.8
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEE-ECCeeCCCCChHhhhccEEEEccCCCCCcc-cHHh
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL-VDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVRY 1079 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~-IDG~dI~~i~l~~LR~~i~iVpQdP~LF~g-TIr~ 1079 (1232)
||+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.+ |+++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777533 13467778875 9999
Q ss_pred ccCCCC---CCCHHHHHHHH-HHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCH
Q 000904 1080 NLDPLS---QHTDQEIWEVL-AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155 (1232)
Q Consensus 1080 NLdp~~---~~sd~eI~~aL-~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~ 1155 (1232)
|+.... ..+.+++.+.+ +..++.+ .++.. ...||+|||||++||||++++|++++|||||+++|.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQLEQ-------CYTDR----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhChhH-------Hhhch----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 996421 23344433332 3333322 23332 346999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHH
Q 000904 1156 ATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1156 ~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
.+.+.+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+-+++.
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 9999999988655567899999999999976 9999999999999999877774
No 361
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.7e-29 Score=318.70 Aligned_cols=387 Identities=18% Similarity=0.165 Sum_probs=293.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 298 PSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRL 377 (1232)
Q Consensus 298 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1232)
.+.+...++.+++.+....+..++..++..+.|++++.+++.+-.... ...-+.+++++++..++..+......+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777788888888999999999999999999987643221 1223344555555556666666666677788
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 378 IGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1232)
Q Consensus 378 ~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~g 456 (1232)
++.++...+...+|+|.++++.....+.++|++++.+ .|++.+.++.. .+-.+....+.+++.+++++..=++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998877788999999999 69999988653 333333333334444445555434466666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
++++++...+...+.+.+++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+..
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777778888888889999999999999999999999999999999988888776665555555544444433
Q ss_pred HHHHhHhh--HHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 537 TFLFWSSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 537 ~~~~~~~p--~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
..+..... ..+.++.+|.+.+..+.+|.+.+.+...+...+..|+..+......+.+++++++|+.++++.|+..+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 33222222 1233466788888888999999999999999999999999999999999999999999999875432211
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
...+... ..+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|.+|+|.-
T Consensus 445 -~~~~~~~-~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~i 516 (694)
T TIGR01846 445 -GLAALPE-LRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516 (694)
T ss_pred -CCCCCCC-CCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 1111111 34579999999999753 357999999999999999999999999999999999999999998853
No 362
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.4e-30 Score=297.85 Aligned_cols=209 Identities=24% Similarity=0.362 Sum_probs=181.7
Q ss_pred CCCCCCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh
Q 000904 977 PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL 1056 (1232)
Q Consensus 977 ~~~wp~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l 1056 (1232)
+..||....|+|++|++.=+.+.+.+.+|+||+|+.|+.+-|+|+||||||+|++.|.|+.+..+|++.--...-
T Consensus 425 ~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----- 499 (659)
T KOG0060|consen 425 GKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----- 499 (659)
T ss_pred cccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----
Confidence 345677778999999998655466677889999999999999999999999999999999999999997533100
Q ss_pred HhhhccEEEEccCCCCCcccHHhccC-CCC-------CCCHHHHHHHHHHcCCcHHHHhhccCCccccc-CCCCCCChhH
Q 000904 1057 HDLRSRFGIIPQDPTLFNGTVRYNLD-PLS-------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVV-EDGSNWSMGQ 1127 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~LF~gTIr~NLd-p~~-------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~-e~G~nLSgGQ 1127 (1232)
-+.+-|+||.|.+-.||+|+.+- |.. ..+|++|.+.|+.++|.+.++.. +|+|+++. +-.+.||+||
T Consensus 500 ---~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 500 ---PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ---CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHH
Confidence 04589999999999999999873 421 35899999999999999877654 89997664 5577899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCC
Q 000904 1128 RQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDG 1196 (1232)
Q Consensus 1128 RQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G 1196 (1232)
+||+|+||.++.+|++-||||+||++|.+.|..+.+.+|+ .+.|.|+|.||-+..+.-|.++-|+.+
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999999999999999999998 589999999999999999999999864
No 363
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=290.75 Aligned_cols=196 Identities=24% Similarity=0.321 Sum_probs=167.9
Q ss_pred eeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCC----CCChHhhhccEEEEccCCCCCcc-cHHh
Q 000904 1005 GISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDIS----KLGLHDLRSRFGIIPQDPTLFNG-TVRY 1079 (1232)
Q Consensus 1005 ~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~----~i~l~~LR~~i~iVpQdP~LF~g-TIr~ 1079 (1232)
+++|+.++.-.+||-|+||||||||++++.|+..|++|.|.+||.-+. .+.+..=+++||||+||.-||.. |||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 678888887899999999999999999999999999999999997653 34455558899999999999965 9999
Q ss_pred ccCCCCCC-CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHH
Q 000904 1080 NLDPLSQH-TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158 (1232)
Q Consensus 1080 NLdp~~~~-sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~ 1158 (1232)
||...... +.++..++.+..|+.....+.| ..||||||||++|+||||.+|++|+||||-|+||....
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99854433 3456666666667766666655 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhhc
Q 000904 1159 MILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1159 ~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~~ 1211 (1232)
+.|.--|++..+ +--++.|||-++.+.. +|+|++|++|||..+|.-++.+..+
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 998877766543 4679999999999987 9999999999999999999998764
No 364
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-32 Score=280.66 Aligned_cols=154 Identities=41% Similarity=0.602 Sum_probs=143.6
Q ss_pred EEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc
Q 000904 988 ICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP 1067 (1232)
Q Consensus 988 ~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp 1067 (1232)
++|++++|.. .++++++|++|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++......+++++++|+|
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 6799999953 36999999999999999999999999999999999999999999999999998877778889999999
Q ss_pred cCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1068 QDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1068 QdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
| ||+|||||++||||++.+|++++||
T Consensus 80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9 9999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCE
Q 000904 1148 EATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGK 1197 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~ 1197 (1232)
|||++||.++...+.+.|++..+ ++|++++||+++.+.+ ||++++|++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999987433 5899999999999999 59999999985
No 365
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-32 Score=337.76 Aligned_cols=199 Identities=23% Similarity=0.302 Sum_probs=157.5
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
|+++|++++|+. ..+|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.++|. .+++|
T Consensus 2 i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----------~~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----------WQLAW 68 (638)
T ss_pred EEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 689999999963 46999999999999999999999999999999999999999999999983 24888
Q ss_pred EccCCCCCcccHHhccCC---------------------------------CCC-CCHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1066 IPQDPTLFNGTVRYNLDP---------------------------------LSQ-HTDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1066 VpQdP~LF~gTIr~NLdp---------------------------------~~~-~sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
++|++..+..|+.+.+.. .+. ..++++.++|+.+|+.+
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-------- 140 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-------- 140 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc--------
Confidence 888764444444332210 000 01233444555554431
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV 1190 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV 1190 (1232)
........+||||||||++|||||+.+|+||+|||||++||.++...+.+.|++. ++|||+||||++.+.. ||+|
T Consensus 141 --~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 141 --EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKI 216 (638)
T ss_pred --hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEE
Confidence 1122234579999999999999999999999999999999999999999999873 5799999999999987 8999
Q ss_pred EEEeCCEEEE-ecChhHHHh
Q 000904 1191 LAISDGKLAE-YDEPMKLMK 1209 (1232)
Q Consensus 1191 lVL~~G~vvE-~g~p~~Ll~ 1209 (1232)
++|++|++.+ .|+++....
T Consensus 217 ~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred EEEeCCEEEEecCCHHHHHH
Confidence 9999999986 466666554
No 366
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.5e-28 Score=306.55 Aligned_cols=375 Identities=14% Similarity=0.168 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVR 383 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 383 (1232)
.++.+++.++...++.++..++..+.|++++.+++.+..++. ...+++..++..++..+...-..+...+++.++|
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD----VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888889999999999999999999999997654321 1111112222333444444444566778888999
Q ss_pred HHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000904 384 SLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIM 461 (1232)
Q Consensus 384 ~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~ 461 (1232)
..+...+|+|.++++....++.++|++++.++.|++.+.++.. .+..+....+.+++++++++. +.| .+++.+++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~~~~ 167 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA-MDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999998877788899999999999999976543 333444445555444444433 233 4555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000904 462 ITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNV----EYKWLSAVQLRKAYNT 537 (1232)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~----E~~~l~k~~~~~~~~~ 537 (1232)
+...+...+.++..+.+++..+..++..+.+.|.++||++||.|+.|+.+.+++.+.-++ +.+..+..........
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777888888888888899999999999999999999999999888776664443 3322222222222222
Q ss_pred HHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcc
Q 000904 538 FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQ 617 (1232)
Q Consensus 538 ~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 617 (1232)
++... ..+.++.+|.+.+..+.+|.+.+++.+.++..+..|+..+...+..+.+++++++|+.++++.++........
T Consensus 248 ~~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 325 (585)
T TIGR01192 248 MASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADA 325 (585)
T ss_pred HHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccC
Confidence 22222 1234456788888888999999999999999999999999999999999999999999999765322111110
Q ss_pred cCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 618 KGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 618 ~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+... ..+.|+++|++|+|+++ +++|+|+||++++||+++|+|+||||||||++.|+|+++|.+|++.
T Consensus 326 ~~~~~-~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 326 PELPN-VKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred CCCCC-CCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 01111 23469999999999742 4789999999999999999999999999999999999999999884
No 367
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=3.3e-32 Score=274.16 Aligned_cols=203 Identities=25% Similarity=0.330 Sum_probs=169.7
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
+..++++.+|......+|+|+|++|.+||.+.++||||||||||++++.|+.+|+.|+|.+||..|..-+ ..=|+
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----cccee
Confidence 4567899999654456999999999999999999999999999999999999999999999999887654 34689
Q ss_pred EccCCCCCc-ccHHhccCCC---CCCC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1066 IPQDPTLFN-GTVRYNLDPL---SQHT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1066 VpQdP~LF~-gTIr~NLdp~---~~~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
|+||+-|+. -|+.+|+... .... .+...+.|..+||.++-.+.+ -+||||||||+.|||||
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----------~qLSGGmrQRvGiARAL 147 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI-----------WQLSGGMRQRVGIARAL 147 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce-----------EeecchHHHHHHHHHHh
Confidence 999999885 5899998631 1111 233567788888877653332 37999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEe--CCEEEEecCh
Q 000904 1138 LRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAIS--DGKLAEYDEP 1204 (1232)
Q Consensus 1138 L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~--~G~vvE~g~p 1204 (1232)
.-+|+.|+||||.++||.-|.+.+|+.|-+.. .++-+++|||+++...- +++++||+ .|||++.-+|
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999999999999999987643 47889999999987665 89999997 5899986444
No 368
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=3.7e-32 Score=285.03 Aligned_cols=155 Identities=26% Similarity=0.283 Sum_probs=136.6
Q ss_pred EeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEcc
Q 000904 989 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQ 1068 (1232)
Q Consensus 989 ~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQ 1068 (1232)
.|++++|.. ..+++++ ++|++||++||+|+||||||||+++|.|+++|++|+|.+||. .++++||
T Consensus 4 ~~l~~~~~~--~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q 68 (177)
T cd03222 4 PDCVKRYGV--FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQ 68 (177)
T ss_pred CCeEEEECC--EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcc
Confidence 478899953 4688884 999999999999999999999999999999999999999995 3789999
Q ss_pred CCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000904 1069 DPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDE 1148 (1232)
Q Consensus 1069 dP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDE 1148 (1232)
++. ||+|||||++||||++++|++++|||
T Consensus 69 ~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 69 YID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred cCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 763 89999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-C-CcEEEEEecChhhhhh-cCeEEEEeCCEEEE--ecChhHHHh
Q 000904 1149 ATASIDNATDMILQKTIRAEF-A-DCTVITVAHRIPTVMD-CTMVLAISDGKLAE--YDEPMKLMK 1209 (1232)
Q Consensus 1149 aTs~LD~~T~~~Iq~~L~~~~-~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE--~g~p~~Ll~ 1209 (1232)
||++||.++.+.+.+.|++.. + +.|+|+|||+++.+.+ ||++++|+++-.+- +|.|..-.+
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 163 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE 163 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence 999999999999999998753 3 3899999999999986 99999999876552 367765443
No 369
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=2.3e-32 Score=280.00 Aligned_cols=203 Identities=26% Similarity=0.359 Sum_probs=168.0
Q ss_pred CCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCC--CC-
Q 000904 997 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT--LF- 1073 (1232)
Q Consensus 997 ~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~--LF- 1073 (1232)
+..+++|+++|++|+.||.|-|+|.||||||||++++.|-+.|++|+|.|||+|+.+++.+..-..++-|+|||. .+
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 345679999999999999999999999999999999999999999999999999999999999899999999995 33
Q ss_pred cccHHhccCCCC---C---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000904 1074 NGTVRYNLDPLS---Q---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1074 ~gTIr~NLdp~~---~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILD 1147 (1232)
+-||.||+.... + .+..--. =.+....+.+..++.||+-.+++.-.-|||||||-++|+-|.+++|+||+||
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~--~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLD 173 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNE--RRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD 173 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhH--HHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 559999985321 0 1111000 0112233456667788888888887889999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHH--hcCCcEEEEEecChhhhhhc-CeEEEEeCCEEEEe
Q 000904 1148 EATASIDNATDMILQKTIRA--EFADCTVITVAHRIPTVMDC-TMVLAISDGKLAEY 1201 (1232)
Q Consensus 1148 EaTs~LD~~T~~~Iq~~L~~--~~~~~TVI~IAHrl~ti~~~-DrVlVL~~G~vvE~ 1201 (1232)
|=||+|||.+.+.+.+.=++ +..+-|.++|||.++-..+| +|.++|++|+|+-+
T Consensus 174 EHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred chhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999998888765443 12467999999999998886 89999999999854
No 370
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.98 E-value=1.9e-28 Score=305.27 Aligned_cols=381 Identities=16% Similarity=0.169 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTE-GKAG--FKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGL 380 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1232)
..+.+++.++++.++.++..++....|.+++.+++..- .+.. ........++++++..++..++..-..+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999999999998542 2211 00111112223333445555555555667778888
Q ss_pred HHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000904 381 KVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALV 458 (1232)
Q Consensus 381 ~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~ 458 (1232)
++...+-..+|+|.++++....++.++|++++.+++|++++.++.. .+..+....+.+++++++++.. .| .+++.++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~l~~~~ 168 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFF-DLTLALTLGG 168 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999988877788999999999999999998764 3444444555555554444432 32 3333322
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 459 VIMITVL-CNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNT 537 (1232)
Q Consensus 459 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~ 537 (1232)
++++..+ +...+.++.++..++..+..++-.+.+.|.++|+++||.|+.|+.+.++..+..++-.+...+.....+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (574)
T PRK11160 169 ILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQ 248 (574)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 234556777888888889999999999999999999999999999888877765554444444433333322
Q ss_pred HHHhHhh--HHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch
Q 000904 538 FLFWSSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLV-QDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1232)
Q Consensus 538 ~~~~~~p--~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l-~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 614 (1232)
.+..... ..+.++.+|.+. .++.++.+..++.+.+..++ ..|+..++..+..+.++++|++||.++++.++..+..
T Consensus 249 ~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~ 327 (574)
T PRK11160 249 ALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP 327 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 2222111 122334555555 46678888877666554333 4588888899999999999999999999875421111
Q ss_pred hcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 615 IRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 615 ~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
....+. . ..+.|+++|++|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.-
T Consensus 328 ~~~~~~-~-~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 328 TTSTAA-A-DQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred cccCCC-C-CCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 011111 1 34579999999999753 357999999999999999999999999999999999999999998843
No 371
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.98 E-value=3.1e-28 Score=305.35 Aligned_cols=377 Identities=18% Similarity=0.209 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 303 TIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEG-YVLAITLFVAKILESLSQRQWYFRSRLIGLK 381 (1232)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1232)
...+.+++.++...++.++..++..+.|+++..+++.+.......... ..+++++++..++..+......+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888999999999999999999998764322211111 2223334444555566555566677788888
Q ss_pred HHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000904 382 VRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGL-ATIAALVV 459 (1232)
Q Consensus 382 ~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~-~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~ 459 (1232)
+...+...+|+|.++.+.....+.++|+++|.++.|++++.++.... ..+....+.+++++.+++. ++| .+++.+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~li~l~~ 174 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFS-LDWRMALVAIMI 174 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 88889999999999988777777899999999999999998865443 3333333333333333333 344 44455544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000904 460 IMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAY---- 535 (1232)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~---- 535 (1232)
+++.+.+.....+...+..++..+..++-.+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+.
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (592)
T PRK10790 175 FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRP 254 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556667777778888888888889999999999999999999999999887665544332222222211
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchh
Q 000904 536 NTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1232)
Q Consensus 536 ~~~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 615 (1232)
...+......++.++.++ + ...+.++.+.++..+.++..+..|+..++.....+.++++|.+||.++++.++.+....
T Consensus 255 ~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 332 (592)
T PRK10790 255 LLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND 332 (592)
T ss_pred HHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 111111111122122222 2 35677999999999999999999999999999999999999999999998654322211
Q ss_pred cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 616 RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 616 ~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..+ . ..+.|+++|++|+|+. ++++|+|+||++++||+++|+|++|||||||+++|+|+++|.+|.+.
T Consensus 333 -~~~--~-~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 333 -DRP--L-QSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred -ccC--C-CCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 111 1 2356999999999974 35799999999999999999999999999999999999999999874
No 372
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=1e-31 Score=281.51 Aligned_cols=160 Identities=22% Similarity=0.273 Sum_probs=133.6
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHh
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRY 1079 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~ 1079 (1232)
.++|+|+||+|++||+++|+||||||||||+++++ +++|+|.++|.. ... .|.++++++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 36899999999999999999999999999999986 369999998752 221 2456888887
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC--CCEEEEeccCCCCCHHH
Q 000904 1080 NLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR--SRILVLDEATASIDNAT 1157 (1232)
Q Consensus 1080 NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~--~kILILDEaTs~LD~~T 1157 (1232)
.++|++.++.+. .......+||+|||||++||||++++ |++++|||||++||.++
T Consensus 68 -------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 346676665432 13345578999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeC------CEEEEec
Q 000904 1158 DMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISD------GKLAEYD 1202 (1232)
Q Consensus 1158 ~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~------G~vvE~g 1202 (1232)
.+.+.+.|++.. .++|||+|||+++.+..||++++|++ |++||+|
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 999999998754 47999999999999888999999955 6677765
No 373
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=4.6e-28 Score=303.40 Aligned_cols=375 Identities=17% Similarity=0.161 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 IIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVR 383 (1232)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 383 (1232)
.++.+++.+++..++.++..++..+.|+++..+++.+..+. . .+. +++.+++..++..+......+...++..++|
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-D--IFP-LLAAWAGFGLFNIIAGVLVARHADRLAHRRR 88 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888999999999999999999998775431 1 111 1112222222223333333455677888999
Q ss_pred HHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000904 384 SLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIM 461 (1232)
Q Consensus 384 ~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~ 461 (1232)
..+...+|+|.++++.....+.+.|++++.++.|++.+.+... .+..+-...+-.++.+++++. ++| .+++.+++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~l~~~~ 167 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF-MNWRLSLVLVVLGI 167 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999988777788999999999999999875432 333322222222333333333 333 4455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000904 462 ITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEIL----RNVEYKWLSAVQLRKAYNT 537 (1232)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~----R~~E~~~l~k~~~~~~~~~ 537 (1232)
+...+...+.+.+.+.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+. ++.+.+..+..........
T Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK13657 168 VYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNR 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888999999999999999999999999999999999999877765554 3333333333333322222
Q ss_pred HHHhHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcc
Q 000904 538 FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQ 617 (1232)
Q Consensus 538 ~~~~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 617 (1232)
++.. -..+.+++++.+.+..+.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++..+.....
T Consensus 248 ~~~~--~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 325 (588)
T PRK13657 248 AAST--ITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGA 325 (588)
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 2211 23345567788888888999999999999999999999999999999999999999999999764422111111
Q ss_pred cCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 618 KGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 618 ~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+... ..+.|+++|++|+|+++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|.+.
T Consensus 326 ~~~~~-~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 326 IDLGR-VKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred CCcCC-CCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 11111 23579999999999742 4799999999999999999999999999999999999999999874
No 374
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=296.99 Aligned_cols=193 Identities=24% Similarity=0.348 Sum_probs=167.2
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccE
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRF 1063 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i 1063 (1232)
..+++.+|+|.|.|+.++.++++++.++.-+++++||+||.||||+++++.+-.+|..|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 46999999999998877899999999999999999999999999999999999999999998877 7899
Q ss_pred EEEccCCCCC-cccHHhccC----CCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc
Q 000904 1064 GIIPQDPTLF-NGTVRYNLD----PLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1064 ~iVpQdP~LF-~gTIr~NLd----p~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL 1138 (1232)
+|..|..+-| +-.+- -+| -+...+++|+++.|...|+...+...+- ..||||||-|+++|-...
T Consensus 430 ~~f~Qhhvd~l~~~v~-~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si----------~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVN-AVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSI----------ASLSGGQKSRVAFAACTW 498 (582)
T ss_pred cchhHhhhhHHHHHhH-HHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccc----------cccCCcchhHHHHHHHhc
Confidence 9999987533 22211 111 1223489999999999998876655431 369999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEE
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE 1200 (1232)
.+|.+|||||||++||.++-..+-++|+. |. .-||+||||.+++.. |+.++|.+||+|.-
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKN-FN-GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHh-cC-CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999985 54 459999999999988 99999999999986
No 375
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=6e-31 Score=330.49 Aligned_cols=198 Identities=25% Similarity=0.329 Sum_probs=156.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|. ..++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----------~~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----------LIVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----------CEEE
Confidence 3789999999963 46999999999999999999999999999999999999999999999872 1367
Q ss_pred EEccCCCC-CcccHHhccCC-C---------------------------------------CC-CCHHHHHHHHHHcCCc
Q 000904 1065 IIPQDPTL-FNGTVRYNLDP-L---------------------------------------SQ-HTDQEIWEVLAKCHLG 1102 (1232)
Q Consensus 1065 iVpQdP~L-F~gTIr~NLdp-~---------------------------------------~~-~sd~eI~~aL~~~~L~ 1102 (1232)
+++|+|.. ..+++.+++.. . +. ..++++.++|+..++.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 77877632 22454443210 0 00 0122333444444332
Q ss_pred HHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChh
Q 000904 1103 EAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIP 1182 (1232)
Q Consensus 1103 ~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ 1182 (1232)
.......||||||||++|||||+.+|+||||||||++||.++.+.+.+.|++. +.|||+||||++
T Consensus 150 -------------~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~ 214 (635)
T PRK11147 150 -------------PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRS 214 (635)
T ss_pred -------------CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 12334689999999999999999999999999999999999999999999874 469999999999
Q ss_pred hhhh-cCeEEEEeCCEEEEe-cChhHHHhh
Q 000904 1183 TVMD-CTMVLAISDGKLAEY-DEPMKLMKR 1210 (1232)
Q Consensus 1183 ti~~-~DrVlVL~~G~vvE~-g~p~~Ll~~ 1210 (1232)
.+.. ||+|++|++|+++.+ |++.+.++.
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 9987 899999999999865 788776654
No 376
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=5.4e-31 Score=316.74 Aligned_cols=209 Identities=28% Similarity=0.353 Sum_probs=160.9
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|+++|++++|+ ..++|+|+|+++.+|+|+|||||||+|||||+++|.|..+|++|+|.+++- -+++
T Consensus 3 ~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 488999999994 457999999999999999999999999999999999999999999999861 3799
Q ss_pred EEccCCCCCcc-cHHhccCCCCC-C--CH------------------HHHHHHHHHcCCc---HHHHhhcc--CCccccc
Q 000904 1065 IIPQDPTLFNG-TVRYNLDPLSQ-H--TD------------------QEIWEVLAKCHLG---EAVREKEN--GLDSLVV 1117 (1232)
Q Consensus 1065 iVpQdP~LF~g-TIr~NLdp~~~-~--sd------------------~eI~~aL~~~~L~---~~i~~~p~--gLdt~v~ 1117 (1232)
|++|+|.+.++ ||++.+..... . -. +++.+.++...-+ ..+...-. |++.. .
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 99999998865 88876532110 0 00 1111111111111 11111111 22222 2
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCC
Q 000904 1118 EDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDG 1196 (1232)
Q Consensus 1118 e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G 1196 (1232)
..-.+||||||.|++|||||+.+|+||+|||||++||.++.+-+.+.|.+ +++ |||+||||.+++.. |++|+-+|.|
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEecCC
Confidence 23357999999999999999999999999999999999999999999984 556 99999999999988 9999999999
Q ss_pred EEEEec-ChhHHHh
Q 000904 1197 KLAEYD-EPMKLMK 1209 (1232)
Q Consensus 1197 ~vvE~g-~p~~Ll~ 1209 (1232)
++..|. ..+.-++
T Consensus 227 ~l~~y~Gny~~~~~ 240 (530)
T COG0488 227 KLTPYKGNYSSYLE 240 (530)
T ss_pred ceeEecCCHHHHHH
Confidence 998764 4444443
No 377
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.5e-31 Score=277.11 Aligned_cols=206 Identities=21% Similarity=0.300 Sum_probs=171.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCh-HhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGL-HDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l-~~LR~~i 1063 (1232)
-|+++||+++|. .+++|+|||++|++||+.+|+|+||||||||++++.+-+.|++|.+.+-|....+.+. .++|++|
T Consensus 31 li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 31 LIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred eEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 599999999995 4679999999999999999999999999999999999999999999999999988887 9999999
Q ss_pred EEEccCC---CCCcccHHhccC--------CCC-CCCHH---HHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHH
Q 000904 1064 GIIPQDP---TLFNGTVRYNLD--------PLS-QHTDQ---EIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQR 1128 (1232)
Q Consensus 1064 ~iVpQdP---~LF~gTIr~NLd--------p~~-~~sd~---eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQR 1128 (1232)
|+|+-+- +.-+.++|+-+- .+. .++++ +....|+.+++.+. .+.|. ..||.|||
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-a~r~~----------~~LS~Ge~ 177 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-ADRPF----------GSLSQGEQ 177 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-ccCch----------hhcCHhHH
Confidence 9998432 222445554431 122 34443 35667788877663 33333 37999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CcEEEEEecChhhhhh-cCeEEEEeCCEEEEecC
Q 000904 1129 QLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA---DCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1129 Qrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~---~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~ 1203 (1232)
||+-|||||+++|++|||||||++||....+.+.+.|.+... +.|+|+|||+.+.+.. .++++.+++|+++..|.
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999888888887542 4689999999999887 58999999999988763
No 378
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.7e-31 Score=267.86 Aligned_cols=215 Identities=25% Similarity=0.379 Sum_probs=187.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC-eeCCCCChHhh-hcc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG-IDISKLGLHDL-RSR 1062 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG-~dI~~i~l~~L-R~~ 1062 (1232)
.++++||+++|. .-.+|+++||++.+||--.|+||||+||||++.++.|-.+|++|++++|| .||++++-++. |..
T Consensus 5 iL~~~~vsVsF~--GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFG--GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEc--ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 478899999995 34699999999999999999999999999999999999999999999999 99999998876 667
Q ss_pred EEEEccCCCCCcc-cHHhccCCC------------CCC---CHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChh
Q 000904 1063 FGIIPQDPTLFNG-TVRYNLDPL------------SQH---TDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMG 1126 (1232)
Q Consensus 1063 i~iVpQdP~LF~g-TIr~NLdp~------------~~~---sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgG 1126 (1232)
||==+|.|..|+. ||++||+.. ... ..++|.+.|+..+|.+..... ..+||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----------A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----------AALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----------hhhhccc
Confidence 9999999999965 999999631 111 223688999999888765443 2479999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPM 1205 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~ 1205 (1232)
|||++-|+..+..+|++|+||||+|++-.+..+..-+.|++....++|++|-||+.+++. +|+|-||.+|.|...|+-+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 999999999999999999999999999665556667777777778999999999999998 8999999999999999999
Q ss_pred HHHhhcC
Q 000904 1206 KLMKREG 1212 (1232)
Q Consensus 1206 ~Ll~~~~ 1212 (1232)
++-++++
T Consensus 232 ~v~~dp~ 238 (249)
T COG4674 232 EVQNDPK 238 (249)
T ss_pred HhhcCcc
Confidence 9877653
No 379
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.2e-30 Score=347.85 Aligned_cols=211 Identities=21% Similarity=0.265 Sum_probs=175.5
Q ss_pred eEEEEeeEeEecC-----------CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC--CccEEEECCeeC
Q 000904 985 KVDICDLQIRYRP-----------DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP--AGGKILVDGIDI 1051 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~-----------~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep--~~G~I~IDG~dI 1051 (1232)
.+.++||++.++. +...+|+|||+++++||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999988741 223699999999999999999999999999999999999873 689999999886
Q ss_pred CCCChHhhhccEEEEccCCCCCc-ccHHhccCCC------CCCCHH----HHHHHHHHcCCcHHHHhhccCCcccccCCC
Q 000904 1052 SKLGLHDLRSRFGIIPQDPTLFN-GTVRYNLDPL------SQHTDQ----EIWEVLAKCHLGEAVREKENGLDSLVVEDG 1120 (1232)
Q Consensus 1052 ~~i~l~~LR~~i~iVpQdP~LF~-gTIr~NLdp~------~~~sd~----eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G 1120 (1232)
.+ ...|+.++|++|++.++. .||+|||... ...+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 43 456788999999998775 5999998521 122322 36788888888653 345555433
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCeEEEEeC-
Q 000904 1121 -SNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT-V-MDCTMVLAISD- 1195 (1232)
Q Consensus 1121 -~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t-i-~~~DrVlVL~~- 1195 (1232)
..||||||||++|||+|+.+|+||+|||||++||..+...+.+.|++.. .++|||+++|+++. + ..+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999998853 47899999999984 4 45999999996
Q ss_pred CEEEEecChh
Q 000904 1196 GKLAEYDEPM 1205 (1232)
Q Consensus 1196 G~vvE~g~p~ 1205 (1232)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 380
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1.8e-27 Score=295.31 Aligned_cols=374 Identities=18% Similarity=0.113 Sum_probs=253.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 304 III-CYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKV 382 (1232)
Q Consensus 304 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1232)
+++ .+++.++++.++.++..++....|.+++.+++...... . ....+.+++++ +..++..-..+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--Q-GSLFSFGGLCL---LALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--c-hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 556 77888999999999999999999999998875321110 0 11111112222 22233333444566778888
Q ss_pred HHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000904 383 RSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIM 461 (1232)
Q Consensus 383 R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~ 461 (1232)
...+...+|+|.++++.....++++|++++.+++|++.+.++...+..+....+.+++++++++.. .| .+++.+++++
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~L~li~l~~~~ 163 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYL-SVPMFAITISAII 163 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHH
Confidence 888888899999999887777789999999999999999988765555555555555555555443 33 4444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 462 ITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWET--HFKNAIEILRNVEYKWLSAVQLRKAYNTFL 539 (1232)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~--~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~ 539 (1232)
+.+.+..+..++..+...+..+..++..+.+.|.++|+++||.|+.|+ ...+++.+.-++-.+.-.+..........+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (555)
T TIGR01194 164 IGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENF 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556677777788888888999999999999999999999854 333333332222111111111111111111
Q ss_pred HhHhhHHHHHHHHHHHHHh---CCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcch--
Q 000904 540 FWSSPVLVSTATFGACYFL---NVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMN-- 614 (1232)
Q Consensus 540 ~~~~p~~v~~~tf~~~~~~---~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~-- 614 (1232)
.. ++..+.++.+++. .+.+|.+++++.+.+...+..|+..+...+..+.++++|++||.++++.++.++..
T Consensus 244 ~~----~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~ 319 (555)
T TIGR01194 244 GQ----LLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELE 319 (555)
T ss_pred HH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 11 1111111211111 25789999999998899999999999999999999999999999998642111000
Q ss_pred -h--ccc--CCCCCCcceEEEEeeEEEecCCC--CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccc
Q 000904 615 -I--RQK--GNIENVNHVISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 615 -~--~~~--~~~~~~~~~I~i~~~sfsw~~~~--~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v 687 (1232)
. ... .......+.|+++|++|+|++.+ ++++|+|+||++++||+++|+||+|||||||+++|+|+++|++|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i 399 (555)
T TIGR01194 320 LSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399 (555)
T ss_pred ccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 0 000 00000235799999999997532 2479999999999999999999999999999999999999999988
Q ss_pred c
Q 000904 688 L 688 (1232)
Q Consensus 688 ~ 688 (1232)
.
T Consensus 400 ~ 400 (555)
T TIGR01194 400 L 400 (555)
T ss_pred E
Confidence 4
No 381
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=3.4e-31 Score=327.10 Aligned_cols=192 Identities=23% Similarity=0.274 Sum_probs=158.8
Q ss_pred eeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEE-----------ECCeeCCCCChH-
Q 000904 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIL-----------VDGIDISKLGLH- 1057 (1232)
Q Consensus 990 nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~-----------IDG~dI~~i~l~- 1057 (1232)
+++.+|+++ ..+|++++ ++++||.+||+|+||||||||+++|.|+++|++|+|. ++|.|+.++...
T Consensus 78 ~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 478999753 35899999 9999999999999999999999999999999999998 899888654211
Q ss_pred -hhhcc----EEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHH
Q 000904 1058 -DLRSR----FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFC 1132 (1232)
Q Consensus 1058 -~LR~~----i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~ 1132 (1232)
..+.+ +++++|.|.+|.+|+++|+.... ..+++.++++..++.+.... ...+||||||||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~~-----------~~~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILDR-----------DISELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 11223 44555667788899999997421 23567888888887643222 23579999999999
Q ss_pred HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCC
Q 000904 1133 LGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDG 1196 (1232)
Q Consensus 1133 LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G 1196 (1232)
|||||+++|++|+||||||+||..+...+.+.|++..+++|||+|+||++.+.. ||+|++|++|
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999986458899999999999987 8999999863
No 382
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-29 Score=263.21 Aligned_cols=214 Identities=26% Similarity=0.306 Sum_probs=181.0
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCChHhh-hc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV--EPAGGKILVDGIDISKLGLHDL-RS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~--ep~~G~I~IDG~dI~~i~l~~L-R~ 1061 (1232)
.++++|++++-.+. +.+|||||++|++||..+|.||||||||||.++|+|.- ++++|+|.+||+||.+++.++. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47889999887532 47999999999999999999999999999999999975 8899999999999999998875 66
Q ss_pred cEEEEccCCCCCcc-cHHhccCC-----CC-----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDP-----LS-----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL 1130 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp-----~~-----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr 1130 (1232)
-|.+-+|+|.=++| |+.+-|.- .+ ..-.+++.++++..++++...+. .|. ..||||||.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R------~vN---~GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER------YVN---EGFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc------ccC---CCcCcchHHH
Confidence 79999999998888 55543321 00 12256788999999998844333 233 3699999999
Q ss_pred HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh--cCeEEEEeCCEEEEecChhHH
Q 000904 1131 FCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD--CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1131 l~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
.-|+-+++.+|++.|||||-|+||...-+.|-+.+++.. +++++++|||.-..... .|+|-||-+|+|+..|.| +|
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999988754 48899999999888766 499999999999999999 77
Q ss_pred Hh
Q 000904 1208 MK 1209 (1232)
Q Consensus 1208 l~ 1209 (1232)
..
T Consensus 232 ~~ 233 (251)
T COG0396 232 AE 233 (251)
T ss_pred HH
Confidence 54
No 383
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=2.5e-30 Score=346.37 Aligned_cols=200 Identities=21% Similarity=0.212 Sum_probs=167.6
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc----cCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV----EPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN- 1074 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~----ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~- 1074 (1232)
..+|+|+|+++++||.++|+||||||||||+++|.|+. .|.+|+|.+||.++.+.. +..|++++||+|++.++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 578999999999986554 346778999999998775
Q ss_pred ccHHhccCCC-------C---CCCHHH-----HHHHHHHcCCcHHHHhhccCCcccccC-CCCCCChhHHHHHHHHHHHc
Q 000904 1075 GTVRYNLDPL-------S---QHTDQE-----IWEVLAKCHLGEAVREKENGLDSLVVE-DGSNWSMGQRQLFCLGRALL 1138 (1232)
Q Consensus 1075 gTIr~NLdp~-------~---~~sd~e-----I~~aL~~~~L~~~i~~~p~gLdt~v~e-~G~nLSgGQRQrl~LARALL 1138 (1232)
-||+||+... . ..+.+| +.++++..+|.+ -.|+.+|+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-------TRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-------ccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 5999998531 0 122222 234677777753 34566654 35689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCh-hhhhh-cCeEEEEeCCEEEEecChhHH
Q 000904 1139 RRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRI-PTVMD-CTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1139 ~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl-~ti~~-~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
.+|+||+|||||++||+.+...+.+.|++.. .++|+|+++|++ +.+.+ +|+|++|++|+++.+|+++++
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 9999999999999999999999999999854 378999999997 56655 999999999999999999887
No 384
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=1.4e-26 Score=287.33 Aligned_cols=369 Identities=15% Similarity=0.125 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 300 VLRTIIICYWRDIFMSGFFALLKVLTLSAG-PLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
+++.+++.+++.++...++.++..++..+. |++.+.+++.+.. . ...-+.+++.+++..++..+ ..+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S--LLVLPEFLGLLLLLMAVTLG----SQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c--chHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 466777888888888888889988888874 6777888876532 1 11111111112222222222 22333445
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 458 (1232)
+.++...+-..+|+|.++++....+++++|+++|.++.|++.+..+...+..++...+.+++++++++..=.+.+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555556666777777777666667889999999999999998876667777888888888877777653446666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc--hhHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000904 459 VIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYA--WETHFKNA----IEILRNVEYKWLSAVQLR 532 (1232)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~--wE~~f~~~----i~~~R~~E~~~l~k~~~~ 532 (1232)
++++.+.+...+.++..+..++.++..++..+..+|.++|++++++.. .++.+.++ .++.++...+.. ..
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRAD----TF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHH----HH
Confidence 666666777788888888899999999999999999999999998433 33334444 444443333221 11
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHhCCC---cChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000904 533 KAYNTFLFWSSPVLVSTATFGACYFLNVP---LYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1232)
Q Consensus 533 ~~~~~~~~~~~p~~v~~~tf~~~~~~~~~---Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 609 (1232)
......+ ..++..+.++.+++.++. .+.+.+.........+..|+..+...+..+.+++++++||.+++..|+
T Consensus 232 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~ 307 (547)
T PRK10522 232 HLSAVNW----SNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPY 307 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1111111 111111222322222211 122222222222233668999999999999999999999999986543
Q ss_pred CCcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 610 LQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.++.. ...+. . ..+.|+++|++|+|++ ++++|+|+||+|++||+++|+|++|||||||+++|+|+++|.+|++.
T Consensus 308 ~~~~~-~~~~~-~-~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 308 KAEFP-RPQAF-P-DWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred ccccc-ccccc-C-cCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 22111 11111 1 1246999999999974 24799999999999999999999999999999999999999999884
No 385
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=1.3e-29 Score=318.37 Aligned_cols=221 Identities=21% Similarity=0.218 Sum_probs=159.0
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccc---cCCccEEEECCeeCCCC--Ch--
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLV---EPAGGKILVDGIDISKL--GL-- 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~---ep~~G~I~IDG~dI~~i--~l-- 1056 (1232)
..|+++|++++|+. ..+|+|+||+|++||++|||||||||||||+++|.|.. .|.+|+|.+.++++..- ..
T Consensus 176 ~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 35999999999963 35999999999999999999999999999999999864 57899998655443211 11
Q ss_pred ----------HhhhccEEEEccCCCCCcccHHhccC-CCC-CCCH----HHHHHHHHHcCCcH------HHHhh--ccCC
Q 000904 1057 ----------HDLRSRFGIIPQDPTLFNGTVRYNLD-PLS-QHTD----QEIWEVLAKCHLGE------AVREK--ENGL 1112 (1232)
Q Consensus 1057 ----------~~LR~~i~iVpQdP~LF~gTIr~NLd-p~~-~~sd----~eI~~aL~~~~L~~------~i~~~--p~gL 1112 (1232)
..++..+++++|+|.+...+...|.. |.. ..++ +++.+++++.++.+ .+... .-|+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 12355688999998654334433321 111 0111 22333333333211 01100 0122
Q ss_pred cc-cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeE
Q 000904 1113 DS-LVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMV 1190 (1232)
Q Consensus 1113 dt-~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrV 1190 (1232)
+. .......+||||||||++|||||+++|++|||||||++||..+...+.+.|++. ++|||+||||++.+.. ||+|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEE
Confidence 21 112234589999999999999999999999999999999999999999999874 7899999999999988 9999
Q ss_pred EEEeCCEEEEe-cChhHHH
Q 000904 1191 LAISDGKLAEY-DEPMKLM 1208 (1232)
Q Consensus 1191 lVL~~G~vvE~-g~p~~Ll 1208 (1232)
++|++|++..+ |++++..
T Consensus 412 ~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred EEEECCEEEEeCCCHHHHH
Confidence 99999999754 5555443
No 386
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=3.5e-30 Score=260.74 Aligned_cols=136 Identities=45% Similarity=0.703 Sum_probs=125.4
Q ss_pred ceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCccc-HHhcc
Q 000904 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGT-VRYNL 1081 (1232)
Q Consensus 1003 L~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gT-Ir~NL 1081 (1232)
|+|+|++|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++++||++.+|.+. +++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998774 9999
Q ss_pred CCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCC
Q 000904 1082 DPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATA 1151 (1232)
Q Consensus 1082 dp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs 1151 (1232)
..+++++++++.+++.+ ..+..++.+...||+|||||++||||++++|++||||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 45678999999988765 35566677778999999999999999999999999999997
No 387
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=7.1e-30 Score=340.50 Aligned_cols=199 Identities=22% Similarity=0.292 Sum_probs=163.4
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhhhccEEEEccCCCCCc-c
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN-G 1075 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~-g 1075 (1232)
..+|+|+|++|++||.++|+||||||||||+++|.|+++|+ +|+|.+||.++.+.. .|+.++||+|++.++. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999987653 2778999999988775 5
Q ss_pred cHHhccCCCC-------------CCCH----------HHH------------------HHHHHHcCCcHHHHhhccCCcc
Q 000904 1076 TVRYNLDPLS-------------QHTD----------QEI------------------WEVLAKCHLGEAVREKENGLDS 1114 (1232)
Q Consensus 1076 TIr~NLdp~~-------------~~sd----------~eI------------------~~aL~~~~L~~~i~~~p~gLdt 1114 (1232)
||+|||+... +.+. +++ .++++..||. .-.||
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~-------~~~~t 327 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLD-------ICKDT 327 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCc-------cccCc
Confidence 9999996310 0011 111 2233333332 23466
Q ss_pred cccCC-CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCh-hhhhh-cCe
Q 000904 1115 LVVED-GSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRI-PTVMD-CTM 1189 (1232)
Q Consensus 1115 ~v~e~-G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl-~ti~~-~Dr 1189 (1232)
.|++. ...+|||||||++|||+|+.+|++|+|||||++||+.+...+.+.|++.. .++|+|+++|++ +.+.+ +|+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 67543 46899999999999999999999999999999999999999999999863 378999999996 34544 999
Q ss_pred EEEEeCCEEEEecChhHHH
Q 000904 1190 VLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1190 VlVL~~G~vvE~g~p~~Ll 1208 (1232)
|++|++|+++.+|+++++.
T Consensus 408 vilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 408 IILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred EEEeeCceEEEeCCHHHHH
Confidence 9999999999999999886
No 388
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=4.9e-29 Score=263.60 Aligned_cols=187 Identities=23% Similarity=0.323 Sum_probs=152.9
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCC--cccH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF--NGTV 1077 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF--~gTI 1077 (1232)
..+|+||||++++||++||||+||||||||+++|.|.++|++|+|.++|. ++.+----.=| +-|-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccch
Confidence 36899999999999999999999999999999999999999999999993 33221111112 3478
Q ss_pred HhccCCCC---CCCH----HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000904 1078 RYNLDPLS---QHTD----QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEAT 1150 (1232)
Q Consensus 1078 r~NLdp~~---~~sd----~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaT 1150 (1232)
|+|+-..+ ..+. +...+..+=++|.+++.. |- .+.|-|.+-||+.|-|.-.+|+|||+||..
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-Pv----------ktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-PV----------KTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-ch----------hhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99985322 2233 444556666677776543 22 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh-cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1151 ASIDNATDMILQKTIRAE-FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1151 s~LD~~T~~~Iq~~L~~~-~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
|.-|+.=.+.=++.+++. .++.|+|+|||+++.|++ |||+++|++|++..+|+|++..+.
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 999998777777777765 467999999999999998 999999999999999999999864
No 389
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=6.6e-30 Score=266.52 Aligned_cols=208 Identities=23% Similarity=0.391 Sum_probs=177.4
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.+++++|+.+|. ...+++|+||++++||..|++|+|||||||.+++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg--~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFG--DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccC--ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 378999999996 3569999999999999999999999999999999999999999999999998875 4577999
Q ss_pred EEccCCCCC-cccHHhccCCCC---CCCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLF-NGTVRYNLDPLS---QHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF-~gTIr~NLdp~~---~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
|.|-|--|+ .-||.+.|..++ ....+| +...|++..+.+.- ...-..||-|.+|.+.+-.+
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~-----------~~kIk~LSKGnqQKIQfisa 144 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKK-----------TKKIKELSKGNQQKIQFISA 144 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccc-----------cchHHHhhhhhhHHHHHHHH
Confidence 999999988 458998886554 234444 44455555554321 12235799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
++++|+++|||||.|+||+-+-+.+.+.|.+.. .|.|||+-+||++.+.. ||+++.|++|+.|-+|+-++.-+
T Consensus 145 viHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 145 VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999999988754 58899999999999988 99999999999999999877643
No 390
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.96 E-value=1.2e-25 Score=280.34 Aligned_cols=372 Identities=22% Similarity=0.246 Sum_probs=272.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 308 YWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLT 387 (1232)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~ 387 (1232)
++ .+..+.++.++..++....|.++..+++.+. .+ ......+...+++..++..+......+...+++.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-AD--LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 8888889999999999999999999998876 11 11122222223333334444444455666667788888899
Q ss_pred HHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000904 388 AAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWT-TSVQLCIALIILFHAVGL-ATIAALVVIMITVL 465 (1232)
Q Consensus 388 ~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~-~plqi~~~~~~L~~~lG~-~~l~gl~~~~~~~~ 465 (1232)
..+|+|.++++....+++.+|++++.+++|++.+...+...-..-. .++-++ +.+.+...++| .+++.+...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLI-GSLVLLFSLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999988888888999999999999999988766422222 233333 33333334455 44455554555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHh
Q 000904 466 CNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLF--WSS 543 (1232)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~--~~~ 543 (1232)
....+.++..+..++..+..++..+.+.|.++++++||.|+.|+...++..+.-++..+.-.+.....+....+. ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677667888888899999999999999999999999999998776666555444433322222222222111 111
Q ss_pred hHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCC
Q 000904 544 PVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIEN 623 (1232)
Q Consensus 544 p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~ 623 (1232)
-..+.++.++.+.+..+.++.+.+.+.+.++..+..|+..+...+..+.++.+|++|+.++++.++...+.... . ..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~-~~- 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP-L-KD- 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC-C-CC-
Confidence 12334455666666777899999999999999999999999999999999999999999999985532211111 1 11
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
..+.|+++|++|+|++ ++++|+|+||++++||++|||||+||||||++++|+|.++|.+|.|.-
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 3456999999999975 468999999999999999999999999999999999999999999853
No 391
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1e-28 Score=244.05 Aligned_cols=225 Identities=22% Similarity=0.363 Sum_probs=176.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC-----eeCCCCChHh-
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG-----IDISKLGLHD- 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG-----~dI~~i~l~~- 1058 (1232)
-+++++++..|.+. .-.+||||++.|||..||||+||||||||+++|.+-+.|+.|+|.++- .|+-.++-.+
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 37888999999754 368999999999999999999999999999999999999999999975 3444443222
Q ss_pred ---hhccEEEEccCCCC-C------cccHHhccCCCCC--CC--HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1059 ---LRSRFGIIPQDPTL-F------NGTVRYNLDPLSQ--HT--DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1059 ---LR~~i~iVpQdP~L-F------~gTIr~NLdp~~~--~s--d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
+|..-|+|.|+|-- . -+.|-|-+...+. |- .++..+-|+++.+. + +.+.+.+..+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~---------~-~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID---------L-DRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC---------c-ccccCcccccc
Confidence 35667999999931 0 1112222211111 11 12333445555432 1 23456678999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEEecChhhhhh-cCeEEEEeCCEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA--DCTVITVAHRIPTVMD-CTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~ 1201 (1232)
||.+||+.|||-|..+|++++|||||-+||..-.+.+.+.+|..-. +-.+++||||+..++- +||.+||.+|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999887432 5689999999999876 999999999999999
Q ss_pred cChhHHHhhcCCHHHHHHHH
Q 000904 1202 DEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1202 g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
|-.+..+.++...|.+|.-.
T Consensus 234 GLTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred ccccccccCCCCchHHHHHH
Confidence 99999999999889888643
No 392
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=9.1e-29 Score=239.01 Aligned_cols=194 Identities=23% Similarity=0.327 Sum_probs=159.5
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhhhc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDLRS 1061 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~LR~ 1061 (1232)
-+.++||+.+-+ ....|.++|++|.+||.+-+.||||||||||+.-+.|.+.+. +|++.+|++++..++-+ ++
T Consensus 2 ~l~l~nvsl~l~--g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qR 77 (213)
T COG4136 2 MLCLKNVSLRLP--GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QR 77 (213)
T ss_pred ceeeeeeeecCC--CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hh
Confidence 467889998764 345899999999999999999999999999999999999875 89999999999988765 68
Q ss_pred cEEEEccCCCCCcc-cHHhccCC------CCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHH
Q 000904 1062 RFGIIPQDPTLFNG-TVRYNLDP------LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1062 ~i~iVpQdP~LF~g-TIr~NLdp------~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LA 1134 (1232)
++|+.+|||.||.. +|-+||.. .++........||++.+|.++..+.| ..||||||-|++|-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHH
Confidence 99999999999965 89999852 12334455778999998887776655 47999999999999
Q ss_pred HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhhcCeEEEE
Q 000904 1135 RALLRRSRILVLDEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMDCTMVLAI 1193 (1232)
Q Consensus 1135 RALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~~DrVlVL 1193 (1232)
|+|+..||.|+||||.|.||.+-.....+..-.+ ..+--+|.||||.+-+..-.||+.|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999988776666554332 2477899999999877643354443
No 393
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=4.4e-28 Score=256.90 Aligned_cols=203 Identities=25% Similarity=0.332 Sum_probs=152.0
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc-cCCCCC-cccH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP-QDPTLF-NGTV 1077 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp-QdP~LF-~gTI 1077 (1232)
-++.+||||+|++|+++|.+|+|||||||++|+|.|++.|++|+|.++|.+--+-....+ +++++|+ |--++- .-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~-~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL-RSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH-HHHHHHhhhhheeeeechh
Confidence 358999999999999999999999999999999999999999999999976544222223 3454443 322221 1111
Q ss_pred HhccCC---CCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCC
Q 000904 1078 RYNLDP---LSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASID 1154 (1232)
Q Consensus 1078 r~NLdp---~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD 1154 (1232)
.+.+.. .-+..|++-.+-++ .+++- -+++..+...-..||-|||.|.-||-|||++|+||+|||||=+||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~-----~l~ei--Ldl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLD-----FLTEI--LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHH-----HHHHH--hcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 111100 00223333333221 11111 144444555567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHhh
Q 000904 1155 NATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1155 ~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
..+...|.+.|++. ..++||+..||+++-|.. ||||+.|++|+++..|+-.+|.++
T Consensus 189 V~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 189 VNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred hhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999999874 358999999999999987 999999999999999999988764
No 394
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=7.7e-28 Score=264.32 Aligned_cols=188 Identities=21% Similarity=0.230 Sum_probs=128.6
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHH-HHHhccccCCccEEEEC-C------eeCCCC---ChHhhh-ccEEEEc
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLI-GALFRLVEPAGGKILVD-G------IDISKL---GLHDLR-SRFGIIP 1067 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl-~~L~rl~ep~~G~I~ID-G------~dI~~i---~l~~LR-~~i~iVp 1067 (1232)
..+|+|+||+|++||.+||+|+||||||||+ ..+. .+|++.+. + .++..+ ...+++ ...++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4699999999999999999999999999996 3332 13443221 0 111111 111122 1344555
Q ss_pred cCCCCC-c--ccH---HhccCCC----CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH
Q 000904 1068 QDPTLF-N--GTV---RYNLDPL----SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL 1137 (1232)
Q Consensus 1068 QdP~LF-~--gTI---r~NLdp~----~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL 1137 (1232)
|++... + .++ .+..+.+ .....++..+.|+++++.+. .....+.+||||||||++|||||
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHHH
Confidence 655321 1 121 1111111 11112223455666555331 13345678999999999999999
Q ss_pred ccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEE------eCCEEEEec
Q 000904 1138 LRRS--RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAI------SDGKLAEYD 1202 (1232)
Q Consensus 1138 L~~~--kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL------~~G~vvE~g 1202 (1232)
+++| ++|||||||++||..+...+.+.|++.. .+.|+|+|||+++.+..||+|++| ++|+|+|+|
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9998 5999999999999999999999998743 478999999999998889999999 999999986
No 395
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.95 E-value=2.6e-25 Score=279.87 Aligned_cols=371 Identities=14% Similarity=0.104 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 311 DIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAG--FKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTA 388 (1232)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~ 388 (1232)
.+++..++.++.+.+....|++.+.+++.+.+++. +......+++.+++..++.++ ..|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~----~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA----IKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 56677888889999999999999999998764331 111112222333333333333 344466667777777777
Q ss_pred HHHHHHhcCch----hhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000904 389 AIYKKQLRLSN----AARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIMI 462 (1232)
Q Consensus 389 ~iy~K~L~ls~----~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~~ 462 (1232)
.++++.+.-.. ...++ .+|++.+.+++|++.+.+... .+..+...++.++.+++.++..++| .+++.++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 77777665321 11122 479999999999999988654 5566667778888888888887888 55566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000904 463 TVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWS 542 (1232)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~ 542 (1232)
.+.+...+.+.+.+..++..+..++-....+|.++|+++||+|+-|+.+.++..+.=++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77888888999999999999999999999999999999999999999888887765555555555555444443333222
Q ss_pred hh----HHHHHHHHHHHHHh--C---CCcChhhHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000904 543 SP----VLVSTATFGACYFL--N---VPLYASNVFTF----VATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1232)
Q Consensus 543 ~p----~~v~~~tf~~~~~~--~---~~Lt~~~vFt~----lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e 609 (1232)
.. ..+..+..+..++. | +.+|.+..... ..++..+..|+..+...+..+.+++++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222222332332 1 56887765442 234566788999999999999999999999999996422
Q ss_pred -CCcc-----hhcc-------------c---CCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEecccc
Q 000904 610 -LQSM-----NIRQ-------------K---GNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGS 667 (1232)
Q Consensus 610 -~~~~-----~~~~-------------~---~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GS 667 (1232)
.+.. .... . .......+.|+++|++|+|++ ++++|+|+||+|++||.++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCC
Confidence 1100 0000 0 000002356999999999963 24799999999999999999999999
Q ss_pred chHHHHHHHHhcCCCcccccc
Q 000904 668 GKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 668 GKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|||||+++|.|++|+.+|.+.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~ 510 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLT 510 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEe
Confidence 999999999999999999874
No 396
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=3.1e-27 Score=292.41 Aligned_cols=215 Identities=27% Similarity=0.381 Sum_probs=180.4
Q ss_pred eEEEEeeEeEecCC---CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC---CccEEEECCeeCCCCChHh
Q 000904 985 KVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP---AGGKILVDGIDISKLGLHD 1058 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~---~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep---~~G~I~IDG~dI~~i~l~~ 1058 (1232)
.+.++|+++.-+.. .+.+|||||.+++|||..||.|++|||||||+++|.|..+. .+|+|++||+ ..+.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchhh
Confidence 58899998887543 46799999999999999999999999999999999999985 6899999994 445678
Q ss_pred hhccEEEEccCCCCCc-ccHHhccCCC------CCC----CHHHHHHHHHHcCCcHHHHhhccCCcccccC-CCCCCChh
Q 000904 1059 LRSRFGIIPQDPTLFN-GTVRYNLDPL------SQH----TDQEIWEVLAKCHLGEAVREKENGLDSLVVE-DGSNWSMG 1126 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~-gTIr~NLdp~------~~~----sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e-~G~nLSgG 1126 (1232)
.|+..|||+||-.++. -||||+|... ++. -++.+.+.++..+|.+. =|+.+|. +...+|||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSGG 174 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCccccc
Confidence 8999999999999885 4999998421 112 24557778888777633 2444542 33679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhh-h-hhcCeEEEEeCCEEEEecC
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPT-V-MDCTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~t-i-~~~DrVlVL~~G~vvE~g~ 1203 (1232)
||+|+++|.-|+.+|.||+||||||+||..+...+.++|++.. +|+|||+.=|.++. + .-.|++++|.+|+++-.|+
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 9999999999999999999999999999999999999999854 48999999999864 3 3489999999999999999
Q ss_pred hhHHHh
Q 000904 1204 PMKLMK 1209 (1232)
Q Consensus 1204 p~~Ll~ 1209 (1232)
|+++.+
T Consensus 255 ~~~~~~ 260 (613)
T KOG0061|consen 255 PRELLE 260 (613)
T ss_pred HHHHHH
Confidence 998853
No 397
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-23 Score=247.28 Aligned_cols=367 Identities=19% Similarity=0.198 Sum_probs=269.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 314 MSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKK 393 (1232)
Q Consensus 314 ~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K 393 (1232)
+.+++.++..++...+-.++-..++-+-..+. ...-+.++++++++.++.+++.-.-....++.+.++|..+-..+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777888777766655533322 22334456666667777777666666778899999999999999999
Q ss_pred HhcCchhhhccCChhhHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 394 QLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP----FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMITVLCNAP 469 (1232)
Q Consensus 394 ~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~----~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~~~~~~~~~~ 469 (1232)
..++.....+..++|++++++..-++.+..+. ..+...-..|+-+.++++...+.-|.-.++.+..+++.| ..
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---il 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---IL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HH
Confidence 99999777777889999999999998886643 333334456777777777776665555555555544444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 000904 470 LAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAI----EILRNVEYKWLSAVQLRKAYNTFLFWSSPV 545 (1232)
Q Consensus 470 ~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i----~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~ 545 (1232)
+++..++..++.++....=-..-=+-|+|+-++|.|+-.+...++| ++.|+.-++.||-.....++.-++...+-.
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777666677778899999999999877655554 568999999998777766666666554433
Q ss_pred HHHHHHHHHHHHhC-CCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCC
Q 000904 546 LVSTATFGACYFLN-VPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENV 624 (1232)
Q Consensus 546 ~v~~~tf~~~~~~~-~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 624 (1232)
++ .+.++ .-+++ +++|-...|.++-+--=.-.|++.+-...-.-.++..+.+.+..|++.|+...............
T Consensus 240 lv-Av~~g-~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 240 LV-AVYIG-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred HH-HHHHH-HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 33 23333 34455 58888888888755444556999999999999999999999999999887654432211111112
Q ss_pred cceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 625 ~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+..++.+|++|.|+++ +++++|+||++++|++++|||+||||||||+++|+|+.+|++|++.
T Consensus 318 ~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~ 379 (559)
T COG4988 318 PIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR 379 (559)
T ss_pred CceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence 3345566999999854 3899999999999999999999999999999999999999999984
No 398
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=1.5e-27 Score=256.06 Aligned_cols=163 Identities=20% Similarity=0.248 Sum_probs=133.8
Q ss_pred eeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCc---------cEEEECCeeCCCCChHhhhccEEEEccCCCCCc
Q 000904 1004 KGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAG---------GKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN 1074 (1232)
Q Consensus 1004 ~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~---------G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~ 1074 (1232)
+++++++++| .++|+||||||||||+++|.++..|.. |++.++|.++.. ...+.+++++||+|..+-
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCce
Confidence 5689999999 999999999999999999999987653 468888887754 234688999999998761
Q ss_pred ccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEEeccC
Q 000904 1075 GTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL----RRSRILVLDEAT 1150 (1232)
Q Consensus 1075 gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL----~~~kILILDEaT 1150 (1232)
+...++++.++++.. + ..+ .....||+|||||++|||+++ ++|++++|||||
T Consensus 90 ----------~~~~~~~~~~~l~~~---~-------~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 90 ----------SIISQGDVSEIIEAP---G-------KKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred ----------eEEehhhHHHHHhCC---C-------ccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 111245677777761 1 112 234579999999999999986 577999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEe
Q 000904 1151 ASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAIS 1194 (1232)
Q Consensus 1151 s~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~ 1194 (1232)
++||+++...+.+.|++..++.|||+|||+++.+..||+++.+.
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 99999999999999998766899999999999988899999885
No 399
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.1e-26 Score=251.52 Aligned_cols=193 Identities=23% Similarity=0.291 Sum_probs=150.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.+-+.||+|.|+. ..+.+++++|-|.--.+|+||||||.|||||+++|.|-++|+.|+..-+. |-+||
T Consensus 586 vLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIG 653 (807)
T ss_pred eeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeee
Confidence 3668899999964 45789999999999999999999999999999999999999999876443 56899
Q ss_pred EEccCCC--C-CcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC
Q 000904 1065 IIPQDPT--L-FNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS 1141 (1232)
Q Consensus 1065 iVpQdP~--L-F~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~ 1141 (1232)
...|... | -+.|--+-|.-.-...-++.+.+|...||....... .-..||||||-|+++|-.-++.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCCC
Confidence 9999762 1 122433322211122346778888888775432211 12369999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcC-eEEEEeCCEEEEe
Q 000904 1142 RILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCT-MVLAISDGKLAEY 1201 (1232)
Q Consensus 1142 kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~D-rVlVL~~G~vvE~ 1201 (1232)
+||||||||++||.++...+-++|++ .+..||+|+||-..|...| ..+|+++-.|-|.
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIne--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHh--ccCcEEEEecccceeeecCceEEEEccCChhhc
Confidence 99999999999999999999999986 3557999999999998755 4666666555443
No 400
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-26 Score=234.94 Aligned_cols=186 Identities=23% Similarity=0.335 Sum_probs=155.3
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++.+|++..- +...++.++||++.+||.+-|+||||||||||+++|.|+.+|++|+|.++|.+|.... +..++.+.|
T Consensus 3 L~a~~L~~~R--~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCER--GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred chhhhhhhcc--CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 3455666543 3457899999999999999999999999999999999999999999999999887754 334677788
Q ss_pred EccCCCCC-cccHHhccCCCC----CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccC
Q 000904 1066 IPQDPTLF-NGTVRYNLDPLS----QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRR 1140 (1232)
Q Consensus 1066 VpQdP~LF-~gTIr~NLdp~~----~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~ 1140 (1232)
+--.|-+= +-|+.|||..+. ..+++.+|+||+.++|.++. ++|- .+||.|||+|++|||-.+.+
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp~----------~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLPV----------GQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccch----------hhcchhHHHHHHHHHHHcCC
Confidence 88777654 559999997543 35678999999999997643 2333 37999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~ 1185 (1232)
+++-||||||+++|.+.++.+...+.+.. +|..||..||..--+.
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99999999999999999999999988754 4788999999876553
No 401
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=2e-26 Score=255.59 Aligned_cols=194 Identities=20% Similarity=0.287 Sum_probs=137.7
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHh-----cc-c----cCCccE-----------EEECCeeCCCCChH--
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF-----RL-V----EPAGGK-----------ILVDGIDISKLGLH-- 1057 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~-----rl-~----ep~~G~-----------I~IDG~dI~~i~l~-- 1057 (1232)
..|||||++|+.|+.++|+|.||||||||++-++ +. . .|..++ |.+|..+|..-+..
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999998552 21 1 133332 45555544332211
Q ss_pred --------hhhc----------------cEEEEccCCC-CCcccHHhccCCCCCC-CHHHHHHHHHHcCCcHHHHhhccC
Q 000904 1058 --------DLRS----------------RFGIIPQDPT-LFNGTVRYNLDPLSQH-TDQEIWEVLAKCHLGEAVREKENG 1111 (1232)
Q Consensus 1058 --------~LR~----------------~i~iVpQdP~-LF~gTIr~NLdp~~~~-sd~eI~~aL~~~~L~~~i~~~p~g 1111 (1232)
++|+ .+.|..++.. ..+-|+.+|++.+... ..++..++|++++|...
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l------- 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI------- 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh-------
Confidence 1111 1223333332 2233555555443321 22344455555554331
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHccC---CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhc
Q 000904 1112 LDSLVVEDGSNWSMGQRQLFCLGRALLRR---SRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1112 Ldt~v~e~G~nLSgGQRQrl~LARALL~~---~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~ 1187 (1232)
..+....+||||||||++|||+|+++ |++++|||||++||+.+.+.+.+.|++.. .+.|+|+|+|+++.+..|
T Consensus 162 ---~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 162 ---KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred ---hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 23455678999999999999999996 79999999999999999999999998754 478999999999999999
Q ss_pred CeEEEE------eCCEEEEecCh
Q 000904 1188 TMVLAI------SDGKLAEYDEP 1204 (1232)
Q Consensus 1188 DrVlVL------~~G~vvE~g~p 1204 (1232)
|+|++| ++|+|++.|+|
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999986
No 402
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.9e-27 Score=230.22 Aligned_cols=199 Identities=22% Similarity=0.327 Sum_probs=153.8
Q ss_pred EEEEeeEeEecC----C-CCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC----eeCCCCCh
Q 000904 986 VDICDLQIRYRP----D-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG----IDISKLGL 1056 (1232)
Q Consensus 986 I~~~nvs~~Y~~----~-~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG----~dI~~i~l 1056 (1232)
+.++|++.+|.- + .-||++|+||++++||++.+=|+||||||||+++|.+-|.|++|+|.+.. +|+.....
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 667788777631 1 13699999999999999999999999999999999999999999999953 45555554
Q ss_pred Hh----hhccEEEEccCCCCCc-c-c---HHhccCCCCC---CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCC
Q 000904 1057 HD----LRSRFGIIPQDPTLFN-G-T---VRYNLDPLSQ---HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWS 1124 (1232)
Q Consensus 1057 ~~----LR~~i~iVpQdP~LF~-g-T---Ir~NLdp~~~---~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLS 1124 (1232)
++ .|+-||||+|---... - + +.+-+--.+- .-.+...+.|.+.++.+...+++. ..+|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaP----------aTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAP----------ATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCC----------cccC
Confidence 43 3677999999431110 0 0 1111100111 123445677888888888877764 5899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh-cCeEEEEe
Q 000904 1125 MGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD-CTMVLAIS 1194 (1232)
Q Consensus 1125 gGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~-~DrVlVL~ 1194 (1232)
|||+||+.|||.++-+-+||+|||||++||..+.+.+.+.|++.. +|+.+|=|=||-+.=.. |||++-|.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999999999999854 58899999999776555 89998775
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.93 E-value=8.2e-24 Score=240.20 Aligned_cols=193 Identities=22% Similarity=0.326 Sum_probs=162.6
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG 1064 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~ 1064 (1232)
.|.++|+-+-- |+...+...+||+|++|-.+-|.||||||||+|.+.|.|+.+...|...+-- +.+|-
T Consensus 481 gI~lenIpvIt-P~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mF 548 (728)
T KOG0064|consen 481 GIILENIPVIT-PAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIF 548 (728)
T ss_pred ceEEecCceec-cCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceE
Confidence 38888887654 4556688999999999999999999999999999999999999888776642 45799
Q ss_pred EEccCCCCCcccHHhccC-CC-------CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHH
Q 000904 1065 IIPQDPTLFNGTVRYNLD-PL-------SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRA 1136 (1232)
Q Consensus 1065 iVpQdP~LF~gTIr~NLd-p~-------~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARA 1136 (1232)
||||.|.+=-||+||.+- |- ..++|+|+...|+.++|+. +.+...|+|....- -+-||||||||+++||.
T Consensus 549 YIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~~dW-kd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 549 YIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWDAVRDW-KDVLSGGEKQRMGMARM 626 (728)
T ss_pred eccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChhhhccH-HhhccchHHHHHHHHHH
Confidence 999999998999998873 32 2478999999999999974 45556788776533 35799999999999999
Q ss_pred HccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEE
Q 000904 1137 LLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAI 1193 (1232)
Q Consensus 1137 LL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL 1193 (1232)
+.++|+--+|||+||++-.+-|..|.++.++ .|-+.|.|+||++...--...+-.
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHHHHHHHHhc
Confidence 9999999999999999999999999999886 588999999999877654444443
No 404
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.1e-22 Score=228.45 Aligned_cols=384 Identities=17% Similarity=0.192 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 300 VLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAG-FKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
+.+..++ .|+.+++++++.++..++...--.+=+.+|.-..-... ....-|+-+++.=...+..+....-=...+...
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444444 67777777777666555544333344455533211110 001111122222222333333222222334445
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIIL--FHAVGLATIAA 456 (1232)
Q Consensus 379 ~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L--~~~lG~~~l~g 456 (1232)
..|+=+.+--.+|+|....+..-.....+|++.|.+..|++.+++...-.-.-|..-+-++++..+. +..++.+.+.+
T Consensus 86 tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~ 165 (573)
T COG4987 86 TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLG 165 (573)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6677788888899999999988777788999999999999999998766655554444333333332 44444566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 457 LVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1232)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~ 536 (1232)
+...++++.+-....+.-++..++..+.+..=-.-..+.+.|+.-.+++|-++.|.+.+++.-+.=.+.-+|..-.....
T Consensus 166 ~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~ 245 (573)
T COG4987 166 LILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLS 245 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555666666666655555555567788999999999999999999876653332222222333332232
Q ss_pred HHHHhHhh-HHHH--HHHHHHHHHhCCCcC-hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Q 000904 537 TFLFWSSP-VLVS--TATFGACYFLNVPLY-ASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQS 612 (1232)
Q Consensus 537 ~~~~~~~p-~~v~--~~tf~~~~~~~~~Lt-~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 612 (1232)
.++..... .++. .++++.-.-.| .++ +.-+...++.|..+-.-.-..|.+...+-|+..|.+|+.+.++.++-..
T Consensus 246 ~a~~~l~~g~~v~~~l~w~a~~~~~G-~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~ 324 (573)
T COG4987 246 DAILLLIAGLLVIGLLLWMAAQVGAG-ALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT 324 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCC-CcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccC
Confidence 22222211 1121 22222212223 333 2222222222333322112234677888899999999999998754333
Q ss_pred chhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 613 MNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 613 ~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
...+..+. .+..++++|++|+|+.+ +.++|+|+||++++||+|||+|++||||||+++.|.|-++|.+|++.-
T Consensus 325 ~~~~~~~~---~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~ 397 (573)
T COG4987 325 FPDEQTAT---TGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITL 397 (573)
T ss_pred CCccccCC---ccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeE
Confidence 22111221 22389999999999865 458999999999999999999999999999999999999999999853
No 405
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=243.84 Aligned_cols=175 Identities=27% Similarity=0.359 Sum_probs=131.6
Q ss_pred EEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCC-CCcccHHhccCCCC--
Q 000904 1009 TFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT-LFNGTVRYNLDPLS-- 1085 (1232)
Q Consensus 1009 ~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~-LF~gTIr~NLdp~~-- 1085 (1232)
+|..||.+|++||||-||||++++|+|.++|++|. ..| -+++|=||--. -|+|||++-+.-..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45678999999999999999999999999999998 222 27899999542 48999986552110
Q ss_pred CCCHHHHH-HHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHH
Q 000904 1086 QHTDQEIW-EVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKT 1164 (1232)
Q Consensus 1086 ~~sd~eI~-~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~ 1164 (1232)
.+.+.-.+ +.. .|..|+..+...-.+|||||.||++||-||.|++++.+||||+|.||.+..-.+-++
T Consensus 429 ~~~~s~~~~ei~-----------~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIV-----------KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhc-----------CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 01111111 112 244455555555568999999999999999999999999999999999999888899
Q ss_pred HHHh--cCCcEEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHH
Q 000904 1165 IRAE--FADCTVITVAHRIPTVMD-CTMVLAISD--GKLAEYDEPMKLM 1208 (1232)
Q Consensus 1165 L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~--G~vvE~g~p~~Ll 1208 (1232)
||+. ..++|.++|-||+-.+.- +||++|.+. |+=-....|..+.
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr 546 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMR 546 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHH
Confidence 8873 357899999999988766 899999963 3333334566553
No 406
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=3.1e-25 Score=247.06 Aligned_cols=192 Identities=19% Similarity=0.262 Sum_probs=137.8
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHh----------------ccccCCcc------
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF----------------RLVEPAGG------ 1042 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~----------------rl~ep~~G------ 1042 (1232)
.|+++|.. +|. ...++++++ |+.++|+||||||||||+++|. +++.+.+|
T Consensus 3 ~i~~~nfk-sy~--~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGFK-SYK--DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCcc-Ccc--cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 36666642 354 234777776 8899999999999999999998 34444455
Q ss_pred --EEEECCeeCCC-C--ChHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHH--hhcc-----
Q 000904 1043 --KILVDGIDISK-L--GLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR--EKEN----- 1110 (1232)
Q Consensus 1043 --~I~IDG~dI~~-i--~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~--~~p~----- 1110 (1232)
+|.+++.|-.. + ....++++++++||++.++. ...+.+|++.+++.+++.+... ..+.
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 55555422110 0 11234556677766665432 1246788999999988754210 0111
Q ss_pred --CCcccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhh
Q 000904 1111 --GLDSLVVEDGSNWSMGQRQLFCLGRALL----RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTV 1184 (1232)
Q Consensus 1111 --gLdt~v~e~G~nLSgGQRQrl~LARALL----~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti 1184 (1232)
+++....+.+.+||||||||++||||++ ++|++++|||||++||+.+.+.+.+.|++..++.|+|+++|+.+..
T Consensus 145 l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~ 224 (243)
T cd03272 145 LTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELL 224 (243)
T ss_pred hhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 2222345677899999999999999996 4689999999999999999999999999876688999999998877
Q ss_pred hhcCeEEEEe
Q 000904 1185 MDCTMVLAIS 1194 (1232)
Q Consensus 1185 ~~~DrVlVL~ 1194 (1232)
.-||++++|+
T Consensus 225 ~~~d~i~~l~ 234 (243)
T cd03272 225 EVADKFYGVK 234 (243)
T ss_pred hhCCEEEEEE
Confidence 7799999985
No 407
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=1.8e-25 Score=243.69 Aligned_cols=191 Identities=17% Similarity=0.071 Sum_probs=140.8
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEe-CCcEEEEECCCCCChHHHHHHHhc-cccCCccEEEECCeeCCCCChHhhhcc
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFE-GGHKIGIVGRTGSGKTTLIGALFR-LVEPAGGKILVDGIDISKLGLHDLRSR 1062 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~-~GekvgIVGrtGSGKSTLl~~L~r-l~ep~~G~I~IDG~dI~~i~l~~LR~~ 1062 (1232)
.|+++|+. +|... ++++|+.. +|+.++|+|+||||||||+++|.+ ++.+..+....+ .+...+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58899988 77533 56666544 589999999999999999999994 666665655543 22334444566778
Q ss_pred EEEEccCCCCCcccHHhccCCCCCCCHHHHHHH--HHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc-
Q 000904 1063 FGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEV--LAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR- 1139 (1232)
Q Consensus 1063 i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~a--L~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~- 1139 (1232)
+++++|++... ..+.... ..+.++..+. ++.. +++..+...+.+||+|||||++||||++.
T Consensus 78 v~~~f~~~~~~----~~~~r~~-gl~~~~~~~~~~l~~g-----------~l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKK----YRVERSR-GLDYDQFTRIVLLPQG-----------EFDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeE----EEEEEec-CCCHHHHHHhhhhhhc-----------chHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 99999998322 1222212 2333333332 1222 24444556677899999999999999975
Q ss_pred ---------CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1140 ---------RSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1140 ---------~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
+|++++|||||+++|+.+.+.+.+.|++..+ +.|+|+|||+++.+.. +|+++++++|.+
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 5689999999999999999999999987644 7899999999998877 799999999854
No 408
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=3.2e-24 Score=268.53 Aligned_cols=199 Identities=26% Similarity=0.329 Sum_probs=165.0
Q ss_pred CCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcccc--CCccEEEECCeeCCCCChHhhhccEEEEccCCC-CCc
Q 000904 998 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVE--PAGGKILVDGIDISKLGLHDLRSRFGIIPQDPT-LFN 1074 (1232)
Q Consensus 998 ~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~e--p~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~-LF~ 1074 (1232)
+....|+||+=-++||.-.|++|.||||||||++.|.|-.. ..+|.|+|||.+..+ +..++++|||.|++. +=+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44578999999999999999999999999999999998764 247999999988765 678899999999885 556
Q ss_pred ccHHhccCC------CCCCCHHH----HHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCC-CE
Q 000904 1075 GTVRYNLDP------LSQHTDQE----IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRS-RI 1143 (1232)
Q Consensus 1075 gTIr~NLdp------~~~~sd~e----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~-kI 1143 (1232)
-||||-|.. -.+.+++| +.++.+..+|++.- |..||.-|..||+.||.|+.||=-|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 699998842 12233333 56667666665543 45678888999999999999999999999 89
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhh--hhcCeEEEEe-CCEEEEecChhH
Q 000904 1144 LVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTV--MDCTMVLAIS-DGKLAEYDEPMK 1206 (1232)
Q Consensus 1144 LILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti--~~~DrVlVL~-~G~vvE~g~p~~ 1206 (1232)
|.|||||||||+++...|.+++|+.. .|+||++-=|.++.. ...|+++.|+ .|+.+-+|++.+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999853 589999999998643 4589999996 578999888644
No 409
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.3e-21 Score=225.78 Aligned_cols=358 Identities=17% Similarity=0.170 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 000904 323 VLTLSAGPLLLNAFILVTEGKAGFK---YEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSN 399 (1232)
Q Consensus 323 ~~~~~~~P~ll~~~i~~~~~~~~~~---~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~ 399 (1232)
-.+....|++++..++-++.-+... ......+.+++++.+..+++.---.+....+..++=.....-+|+..+.++-
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4556677999999999886322211 1233445555556666655555555555666666666777788888888888
Q ss_pred hhhccCChhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 400 AARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLAT-IAALVVIMITVLCNAPLAKLQHKF 477 (1232)
Q Consensus 400 ~~~~~~~~G~i~nlms~D~~ri~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~-l~gl~~~~~~~~~~~~~~~~~~~~ 477 (1232)
....+.++|++.+.|..-...|.++.. .+..+.-..+++.+....+|+..|++. +..+..+.....+...++++-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 777777899999999988888888654 334445566788888889999999844 444555555566777788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 000904 478 QTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEI-LRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGACY 556 (1232)
Q Consensus 478 ~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~-~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~~ 556 (1232)
+++.+++.|+..+.+-+.|.|-.+||.|+=|+...+++.+ +++.|-..++-.+.+ ++..+.-- -.+....++..++
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl-~~lnfgQ~--~iFsv~~~~im~l 279 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSL-AFLNFGQK--AIFSVALTFIMVL 279 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHH-HHHHHHHH--HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999765 455554444333322 22222211 1122222333332
Q ss_pred ----HhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEe
Q 000904 557 ----FLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKS 632 (1232)
Q Consensus 557 ----~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~ 632 (1232)
...+.+|.+..--..+++..|+.|+..+.....-+.|+..=..-.....+.++-.... ..|... .++.|+++|
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~-~~~~I~F~d 356 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIEL-FGGSIEFDD 356 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCccc-CCCcEEEEe
Confidence 3456899999999999999999999999998888888877666554444332211110 011111 445799999
Q ss_pred eEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 633 ASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 633 ~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
++|+|++ ++++|+++||+|++||+|||||+|||||||++++|++..+ .+|+|.-
T Consensus 357 V~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~I 410 (591)
T KOG0057|consen 357 VHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILI 410 (591)
T ss_pred eEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEE
Confidence 9999974 4579999999999999999999999999999999999999 8999843
No 410
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.8e-23 Score=229.67 Aligned_cols=362 Identities=16% Similarity=0.252 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcch-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 316 GFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYE-GYVLAITLFVA------KILESLSQRQWYFRSRLIGLKVRSLLTA 388 (1232)
Q Consensus 316 ~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~-g~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~R~~l~~ 388 (1232)
.++.++.-++...-|.+.+.+++-+..+..+.+. -+.++...|+- .++..+-..-|.-..+-...++-..+..
T Consensus 221 l~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfr 300 (790)
T KOG0056|consen 221 LFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFR 300 (790)
T ss_pred HHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHH
Confidence 3444455556666788888888887755444332 22222222221 1222221111211122223344444555
Q ss_pred HHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000904 389 AIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVG-LATIAALVVIMITVLC 466 (1232)
Q Consensus 389 ~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~-~~~w~~plqi~~~~~~L~~~lG-~~~l~gl~~~~~~~~~ 466 (1232)
-+.+-++++.-. ..+||+...|..-.+.+. +..|+ ..+--..+.+++|++..+.... |-.++.+..+.+..-+
T Consensus 301 Hlh~LSlrwHL~----rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~ 375 (790)
T KOG0056|consen 301 HLHNLSLRWHLN----RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYV 375 (790)
T ss_pred HHHhhceeeeec----ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhe
Confidence 555555555543 348999888877666555 32222 2222233455555554444443 3555555566555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000904 467 NAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNA----IEILRNVEYKWLSAVQLRKAYNTFLFWS 542 (1232)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~----i~~~R~~E~~~l~k~~~~~~~~~~~~~~ 542 (1232)
...++..-.++|+++...-.+--....+.|-|..+||.|+-|+.-.++ |.+..+.|-|.+....++......++..
T Consensus 376 Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l 455 (790)
T KOG0056|consen 376 TIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL 455 (790)
T ss_pred eeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 666777778888887666555556667788899999999999866655 4445555665555444444433333221
Q ss_pred hhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCC-CCcchhcccCCC
Q 000904 543 SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPE-LQSMNIRQKGNI 621 (1232)
Q Consensus 543 ~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e-~~~~~~~~~~~~ 621 (1232)
. +....-+.+|.+..+.+|.++-.-.....-.|.+||+.+-....++....+-.+|+.+.+++++ ..+. ..-.|-.
T Consensus 456 g--ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~-P~a~pl~ 532 (790)
T KOG0056|consen 456 G--LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL-PGAPPLK 532 (790)
T ss_pred H--HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC-CCCCCcc
Confidence 1 1222234455566677999987666777788999999999999999999999999999997644 3322 1112211
Q ss_pred CCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 622 ENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 622 ~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
. ..+.|+++|++|+|++ .+|+|+||||++++|+.+|+|||+|+||||+++.+.+..+..+|.+.
T Consensus 533 ~-~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~ 596 (790)
T KOG0056|consen 533 V-TQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT 596 (790)
T ss_pred c-cCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE
Confidence 1 5678999999999975 47999999999999999999999999999999999999999999884
No 411
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.91 E-value=1.1e-24 Score=281.02 Aligned_cols=213 Identities=23% Similarity=0.362 Sum_probs=186.7
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCC-ChHhhhccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKL-GLHDLRSRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i-~l~~LR~~i 1063 (1232)
.+..+|++..|+.... +.+++|+.|++||..|+-|+|||||||.++++.|...|++|++.++|.|++.- +..+.|+.+
T Consensus 564 ~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred eEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4788999999975444 89999999999999999999999999999999999999999999999999764 444689999
Q ss_pred EEEccCCCCCcc-cHHhccCCCCC---CC----HHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQ---HT----DQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~---~s----d~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
||.||+-.+++. |.||.+..+.. .. ++.+...|+.++|.+..... -.++|||+|+||++|-
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSFAI 711 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHHHH
Confidence 999999887754 99999976541 11 34477888888887765432 2479999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCc-EEEEEecChhhhhh-cCeEEEEeCCEEEEecChhHHHh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC-TVITVAHRIPTVMD-CTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~-TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
|++-+|++++|||||+|+|+.+++.+-++|++..+++ .+|..||-++.... |||+..|.+|++.-.|+|++|-.
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999999999999999999877655 99999999999987 99999999999999999999953
No 412
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=1.3e-23 Score=235.03 Aligned_cols=181 Identities=17% Similarity=0.244 Sum_probs=136.4
Q ss_pred CcEEEEECCCCCChHHHHHHHhccccCC-ccEEEECCe-eCCCCC-hHhh-hccEEEEccCCCC---------C-cccHH
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPA-GGKILVDGI-DISKLG-LHDL-RSRFGIIPQDPTL---------F-NGTVR 1078 (1232)
Q Consensus 1013 GekvgIVGrtGSGKSTLl~~L~rl~ep~-~G~I~IDG~-dI~~i~-l~~L-R~~i~iVpQdP~L---------F-~gTIr 1078 (1232)
...++|||+||||||||+.+|.+++.++ .|++..+|. |+-..+ .... +.++++++|+|.. . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5589999999999999999999999876 568888876 432211 1122 4589999999631 1 34677
Q ss_pred hccCCCC---------CCCHHHHHHHHHHcCCc--H--------HHHhhccCCcccccCCCCCCChhHHHHHHHHHHHc-
Q 000904 1079 YNLDPLS---------QHTDQEIWEVLAKCHLG--E--------AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALL- 1138 (1232)
Q Consensus 1079 ~NLdp~~---------~~sd~eI~~aL~~~~L~--~--------~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL- 1138 (1232)
+|+.... ....+++.++|+.+++. + .|.+.-.. .......+.+||+|||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 6663211 12457889999999985 0 11111011 11233456789999999999999997
Q ss_pred ---cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEe
Q 000904 1139 ---RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAIS 1194 (1232)
Q Consensus 1139 ---~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~ 1194 (1232)
++|++++|||||++||.++.+.+.+.|++..++.|+|+||||.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998777889999999988888899998653
No 413
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=1.2e-23 Score=227.18 Aligned_cols=162 Identities=22% Similarity=0.229 Sum_probs=127.3
Q ss_pred eEEEeCCcEEEEECCCCCChHHHHHHH----hccccCCccEEEECCeeCCCCChHhhhccEEEEccCC-----CCCcc-c
Q 000904 1007 SCTFEGGHKIGIVGRTGSGKTTLIGAL----FRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDP-----TLFNG-T 1076 (1232)
Q Consensus 1007 sl~I~~GekvgIVGrtGSGKSTLl~~L----~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP-----~LF~g-T 1076 (1232)
++++.+| .++|+|+||||||||+.+| .|...|..|.+.-|...+. ....+.++++++|++ ..+.. |
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4567778 9999999999999999998 5999998887763322222 234567899999998 33322 7
Q ss_pred HHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH------HHHHHHHccCCCEEEEeccC
Q 000904 1077 VRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL------FCLGRALLRRSRILVLDEAT 1150 (1232)
Q Consensus 1077 Ir~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr------l~LARALL~~~kILILDEaT 1150 (1232)
+.+|+... .++++.+.+ .+.+.+||+||||| ++||||+..+|++++|||||
T Consensus 93 ~~~~~~~~---~~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 93 ILENVIFC---HQGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred Hhhceeee---chHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 77787531 233443332 33456899999996 79999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHHhcC--CcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1151 ASIDNATDM-ILQKTIRAEFA--DCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1151 s~LD~~T~~-~Iq~~L~~~~~--~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
++||+++.. .+.+.|++..+ +.|+|+|||+++.+..||+|++|++
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999999988 99999987654 6799999999999888999999964
No 414
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=7.1e-24 Score=230.12 Aligned_cols=180 Identities=19% Similarity=0.217 Sum_probs=132.1
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhh-ccE
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLR-SRF 1063 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR-~~i 1063 (1232)
.++++|.. +|. ...+++++++ +.+||+|||||||||++++|. .++|.+.. ..| +++
T Consensus 5 ~l~l~nfk-~~~--~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYA--GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKL 61 (212)
T ss_pred EEEEECcc-cCC--CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhH
Confidence 47778876 674 3468898887 899999999999999999996 33454432 233 679
Q ss_pred EEEccCCCCCcc-cHHhccCCCCCCCHHHHHHHHHHcCCc-------------HHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1064 GIIPQDPTLFNG-TVRYNLDPLSQHTDQEIWEVLAKCHLG-------------EAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1064 ~iVpQdP~LF~g-TIr~NLdp~~~~sd~eI~~aL~~~~L~-------------~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
++++|++.+++. |.++++..+....+- +.|+..++. ..+.++|++.++. ...+|+||||
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~----~~~lS~G~~~ 134 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN----ISNLSGGEKT 134 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEEeeccccccccc----hhhcCHHHHH
Confidence 999999877654 667666544322110 011111111 0122233444433 4579999999
Q ss_pred HHHHHHHHcc----CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEe
Q 000904 1130 LFCLGRALLR----RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAIS 1194 (1232)
Q Consensus 1130 rl~LARALL~----~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~ 1194 (1232)
|++||||++. +|++++|||||+++|+.+...+.+.|++..++.|+|+|||+.+....||+|++|.
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 9999999963 5899999999999999999999999998767889999999987777799999985
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.90 E-value=5.4e-23 Score=261.80 Aligned_cols=111 Identities=21% Similarity=0.336 Sum_probs=98.1
Q ss_pred CCcc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000904 1111 GLDS-LVVEDGSNWSMGQRQLFCLGRALLRRS---RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1111 gLdt-~v~e~G~nLSgGQRQrl~LARALL~~~---kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~ 1185 (1232)
||+. .++.....||||||||+.|||+|+++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 6655 357777899999999999999999999 9999999999999999999999998753 4789999999999998
Q ss_pred hcCeEEEE------eCCEEEEecChhHHHhhcCCHHHHHHHH
Q 000904 1186 DCTMVLAI------SDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1186 ~~DrVlVL------~~G~vvE~g~p~~Ll~~~~~~f~~l~~~ 1221 (1232)
.||+|++| ++|+|++.|+|+++.+++.+.=.+..+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~~ 939 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLKP 939 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHHH
Confidence 89999999 7999999999999998877665555543
No 416
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=3.3e-24 Score=212.60 Aligned_cols=207 Identities=20% Similarity=0.280 Sum_probs=167.4
Q ss_pred EEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE
Q 000904 986 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI 1065 (1232)
Q Consensus 986 I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i 1065 (1232)
++++||+..-| |-.+|.++..||.+=+|||||+|||||+..|.|+.+ .+|+|.++|.|++....++|.++=+|
T Consensus 4 ~qln~v~~~tR------L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeecccccccc------ccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHH
Confidence 56677776432 556788999999999999999999999999999985 79999999999999999999888889
Q ss_pred EccCCC-CCcccHHhccCCCCC--CCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc---
Q 000904 1066 IPQDPT-LFNGTVRYNLDPLSQ--HTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR--- 1139 (1232)
Q Consensus 1066 VpQdP~-LF~gTIr~NLdp~~~--~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~--- 1139 (1232)
..|+.. .|...|..-+..... ..-++|.++.++.++. ..++..-++|||||.||+-||-..+.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~-----------DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhccc-----------chhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 888653 666666665543221 1123455555544444 44444556899999999999999885
Q ss_pred ----CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChh-hhhhcCeEEEEeCCEEEEecChhHHHhh
Q 000904 1140 ----RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIP-TVMDCTMVLAISDGKLAEYDEPMKLMKR 1210 (1232)
Q Consensus 1140 ----~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~-ti~~~DrVlVL~~G~vvE~g~p~~Ll~~ 1210 (1232)
..++|++|||-++||.+.+..+-+.|.+.. .|.|||+-.||++ |++.+|+++.+..|++...|+.+|.+..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 248999999999999999988888887643 5889999999996 6788999999999999999999999875
No 417
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.89 E-value=7.1e-20 Score=209.42 Aligned_cols=377 Identities=15% Similarity=0.150 Sum_probs=278.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 298 PSVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRL 377 (1232)
Q Consensus 298 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1232)
.....+....+++.++..+++..+-.++..++|+.+-++-|-+=...+ ...-..+.+.....++++.+.+.--.+...|
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s-~~TLv~Ltvlal~ly~~~glLd~iR~~~l~R 89 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS-VPTLVMLTVLALGLYAFQGLLDAIRSRVLVR 89 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777778888888888888899999999876665554432221 1223445555556667777777767788889
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 378 IGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-----FHQIWTTSVQLCIALIILFHAVGLA 452 (1232)
Q Consensus 378 ~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~-----~~~~w~~plqi~~~~~~L~~~lG~~ 452 (1232)
+|.++-..|-.-||.-+++.....+......+.. .|.+.+..|... +.+.--+|+=+.++ |++.-.+|+.
T Consensus 90 ig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~-fl~Hp~lG~~ 164 (580)
T COG4618 90 IGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVI-FLFHPWLGLI 164 (580)
T ss_pred HHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999998874443332222233443 477777665422 23333366655544 6667778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 453 TIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLR 532 (1232)
Q Consensus 453 ~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~ 532 (1232)
+++|.++++++..+|-.++++ --++-.+..-+|....+..++|..+|+.+|......++-.+...+-+++..+....
T Consensus 165 a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 165 ALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999998888888887666554 34556777888999999999999999999999999999888888888777777666
Q ss_pred HHHHHHHHhHhhHH--HHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 000904 533 KAYNTFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPEL 610 (1232)
Q Consensus 533 ~~~~~~~~~~~p~~--v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~ 610 (1232)
......+.-..-.+ +.++..|+|..+.++.|++.++..--+..=.-.|+-..-..=.++..|+.|.+|+.++|....-
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 65554444333333 3445567788888999999998775444444568888888889999999999999999976332
Q ss_pred CcchhcccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 611 QSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 611 ~~~~~~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.... -..|. .++.+.++++++.-| ..++|+|+||||++++||-++|+||||||||||.++|.|..+|.+|.|.
T Consensus 322 ~~~~-m~LP~---P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR 394 (580)
T COG4618 322 AAER-MPLPA---PQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394 (580)
T ss_pred ccCC-CCCCC---CCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE
Confidence 2211 12332 568899999999765 4568999999999999999999999999999999999999999999984
No 418
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.88 E-value=8e-22 Score=260.20 Aligned_cols=208 Identities=22% Similarity=0.240 Sum_probs=146.2
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHH---------HHhccccCCcc--------EEEEC
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG---------ALFRLVEPAGG--------KILVD 1047 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~---------~L~rl~ep~~G--------~I~ID 1047 (1232)
.++++|++. ..|+|+|++|++||.+||+|+||||||||++ .|.|...+..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 577777752 2699999999999999999999999999999 55554333211 24555
Q ss_pred CeeCCCCC----h------Hhhh---------cc-----EEEEccC-----C-C--------------------------
Q 000904 1048 GIDISKLG----L------HDLR---------SR-----FGIIPQD-----P-T-------------------------- 1071 (1232)
Q Consensus 1048 G~dI~~i~----l------~~LR---------~~-----i~iVpQd-----P-~-------------------------- 1071 (1232)
-.+|..-+ . +++| ++ ..+.+|. | .
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 54443211 1 1444 11 2233443 1 0
Q ss_pred ------CCc-ccHHhccCCCCC------CCHHHHHH---HHHHcCCcHHHHhhccCCccc-ccCCCCCCChhHHHHHHHH
Q 000904 1072 ------LFN-GTVRYNLDPLSQ------HTDQEIWE---VLAKCHLGEAVREKENGLDSL-VVEDGSNWSMGQRQLFCLG 1134 (1232)
Q Consensus 1072 ------LF~-gTIr~NLdp~~~------~sd~eI~~---aL~~~~L~~~i~~~p~gLdt~-v~e~G~nLSgGQRQrl~LA 1134 (1232)
.+. -||.|||+.... .+.+++.+ +|+.+ ||+.. .+....+||||||||++||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHHHHHHHHHH
Confidence 111 145555542110 01122222 22222 55543 4666778999999999999
Q ss_pred HHHc---cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhhcCeEEEEe------CCEEEEecCh
Q 000904 1135 RALL---RRSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMDCTMVLAIS------DGKLAEYDEP 1204 (1232)
Q Consensus 1135 RALL---~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~------~G~vvE~g~p 1204 (1232)
|||+ ++|++|||||||++||.++.+.+.+.|++.. .+.|||+|+|+++.+..||+|++|+ +|++++.|+|
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 9998 5999999999999999999999999998753 4789999999999997799999996 7999999999
Q ss_pred hHHHhh
Q 000904 1205 MKLMKR 1210 (1232)
Q Consensus 1205 ~~Ll~~ 1210 (1232)
++++..
T Consensus 902 eel~~~ 907 (1809)
T PRK00635 902 EELIHL 907 (1809)
T ss_pred HHHHhc
Confidence 999863
No 419
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=3.1e-22 Score=223.23 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=130.0
Q ss_pred EEEEECCCCCChHHHHHHHhccccCCccEEEECCee--C-----CCCChHhhhccEEEEccCCC--CCcccHHhccCCC-
Q 000904 1015 KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID--I-----SKLGLHDLRSRFGIIPQDPT--LFNGTVRYNLDPL- 1084 (1232)
Q Consensus 1015 kvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d--I-----~~i~l~~LR~~i~iVpQdP~--LF~gTIr~NLdp~- 1084 (1232)
.++|+|+||||||||+.+|.++..+..|++..++.+ | ...+.....-.+.+..|++. .+..+++++...+
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 899999999999999999999998878887665421 1 11111233445566666653 4455554433221
Q ss_pred --C-CCCHHHHHHHHHHcCCcHHHHh--hccCCcccc-c--------CCCCCCChhHHHHHHHHHHHcc----CCCEEEE
Q 000904 1085 --S-QHTDQEIWEVLAKCHLGEAVRE--KENGLDSLV-V--------EDGSNWSMGQRQLFCLGRALLR----RSRILVL 1146 (1232)
Q Consensus 1085 --~-~~sd~eI~~aL~~~~L~~~i~~--~p~gLdt~v-~--------e~G~nLSgGQRQrl~LARALL~----~~kILIL 1146 (1232)
+ ..+.+++.+.++.+++..+... .++|--+.+ . ....+||+|||||++||||++. +|++++|
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 1 3567788899999998532111 111111111 1 1236899999999999999986 4899999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1147 DEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1147 DEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
||||++||..+...+.+.|++..+ +.|+|+||||.+.+..||++++|..
T Consensus 184 DEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 184 DEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred ecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 999999999999999999998654 7899999999998888999999863
No 420
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=3.5e-22 Score=203.23 Aligned_cols=225 Identities=20% Similarity=0.315 Sum_probs=179.2
Q ss_pred EEEEeeEeEec--CCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC----CccEEEECCeeCCCCChHhh
Q 000904 986 VDICDLQIRYR--PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP----AGGKILVDGIDISKLGLHDL 1059 (1232)
Q Consensus 986 I~~~nvs~~Y~--~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep----~~G~I~IDG~dI~~i~l~~L 1059 (1232)
++++|++..+. .+.-.+.+++|++.+.||.-|+||.||||||-+++++.|..+- +.-+..+|++|+-+++.++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 34556665552 3334589999999999999999999999999999999998863 45677788999999998887
Q ss_pred hc----cEEEEccCCCC-Ccc--cH----HhccCCCCC----------CCHHHHHHHHHHcCCcHHHHhhccCCcccccC
Q 000904 1060 RS----RFGIIPQDPTL-FNG--TV----RYNLDPLSQ----------HTDQEIWEVLAKCHLGEAVREKENGLDSLVVE 1118 (1232)
Q Consensus 1060 R~----~i~iVpQdP~L-F~g--TI----r~NLdp~~~----------~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e 1118 (1232)
|+ .|++|+|||.- .+. +| -+|+ |+-. ....+..+.|.++|++|.-+-+ ..
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~I-P~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM-~S------- 154 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI-PAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM-RS------- 154 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhC-ccccccchHhhhhchhHHHHHHHHHHhccccHHHHH-Hh-------
Confidence 75 46799999952 222 22 2454 2211 1345667889999998653322 11
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeC
Q 000904 1119 DGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISD 1195 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~ 1195 (1232)
-+..|--||-|.+.||-|+..+|++||-||||+++|+.|...|.+.|.... .+.|++.|+||+.++.. ||+|-||--
T Consensus 155 YP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 155 YPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred CcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 234577899999999999999999999999999999999999999987643 46899999999999988 999999999
Q ss_pred CEEEEecChhHHHhhcCCHHHHHH
Q 000904 1196 GKLAEYDEPMKLMKREGSLFGQLV 1219 (1232)
Q Consensus 1196 G~vvE~g~p~~Ll~~~~~~f~~l~ 1219 (1232)
|+-+|.+..++|++.+...|.+-.
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqAL 258 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQAL 258 (330)
T ss_pred cccccccchhHHhcCCCCchHHHH
Confidence 999999999999998887776543
No 421
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=2.9e-21 Score=245.71 Aligned_cols=97 Identities=18% Similarity=0.305 Sum_probs=87.9
Q ss_pred CCcc-cccCCCCCCChhHHHHHHHHHHHcc---CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000904 1111 GLDS-LVVEDGSNWSMGQRQLFCLGRALLR---RSRILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1111 gLdt-~v~e~G~nLSgGQRQrl~LARALL~---~~kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~ 1185 (1232)
||+. .++.....||||||||++|||+|++ +|+++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 6655 3677788999999999999999997 589999999999999999999999998753 4789999999999998
Q ss_pred hcCeEEEE------eCCEEEEecChhHH
Q 000904 1186 DCTMVLAI------SDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1186 ~~DrVlVL------~~G~vvE~g~p~~L 1207 (1232)
.||+|++| ++|+|++.|+|+++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999886
No 422
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.8e-18 Score=191.41 Aligned_cols=370 Identities=16% Similarity=0.114 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000904 302 RTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKIL-ESLSQRQWYFRSRLIGL 380 (1232)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 380 (1232)
-.++|.+++.++....+.+...+. +-.++-.+-+++-+.+...-.-..+.+++....++ +.+++.--.+..++.-.
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~~---g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~ 81 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGAL---GIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIY 81 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777887777665555544433 33333333333322221111111122222222222 22334445566666777
Q ss_pred HHHHHHHHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 381 KVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVI 460 (1232)
Q Consensus 381 ~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~~~ 460 (1232)
++|..++..|..--+. ...+.+++.+..-.+.|+..|.-.+..+.++-.+.+-+..+...|++.-+...+..++.+
T Consensus 82 klr~~~~~kil~tple----rier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~i 157 (546)
T COG4615 82 KLRSEFIKKILDTPLE----RIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWI 157 (546)
T ss_pred HHHHHHHHHHhcCHHH----HHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888877766655443 223356788999999999999877777776666666666677777776566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhH--HHHHH-HHHHHHHHHHHHHHHHHHHHHH-
Q 000904 461 MITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWET--HFKNA-IEILRNVEYKWLSAVQLRKAYN- 536 (1232)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~--~f~~~-i~~~R~~E~~~l~k~~~~~~~~- 536 (1232)
++.+..+.+..++..++..+..+..|+=.+..+.++.|-|-+|+..=.. .+.+. +...++.|- +..+...+.
T Consensus 158 vv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~~ 233 (546)
T COG4615 158 VVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHHH
Confidence 8888889888888888888889999999999999999999999876322 22222 222333222 112222221
Q ss_pred HHHHhHhhHHHHHHHHHHHHHhCCCc-ChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchh
Q 000904 537 TFLFWSSPVLVSTATFGACYFLNVPL-YASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1232)
Q Consensus 537 ~~~~~~~p~~v~~~tf~~~~~~~~~L-t~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 615 (1232)
....|+.-++.+++....|+...-.. +...+-|.....-.|+.|+.++...++.+.+|+++++||.++=..|+..+-..
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 22334444443333333222221111 11234444444566899999999999999999999999999866555433211
Q ss_pred -cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 616 -RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 616 -~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+..| +=..||++|+.|+|++. ..-+.-||++|++||+|-++|.|||||||+++.+.|.+.|.+|+|.
T Consensus 314 ~q~~p----~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ 381 (546)
T COG4615 314 PQAFP----DWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (546)
T ss_pred CCcCC----cccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee
Confidence 1111 23469999999999753 2678899999999999999999999999999999999999999884
No 423
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.6e-22 Score=227.26 Aligned_cols=184 Identities=25% Similarity=0.413 Sum_probs=140.2
Q ss_pred ceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee--CCCCC------
Q 000904 984 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID--ISKLG------ 1055 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d--I~~i~------ 1055 (1232)
.+|..+|++..|+ .+..|++-++++..|-+.|+|||||+|||||+++|.. |.|.+=.++ .....
T Consensus 79 ~Di~~~~fdLa~G--~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG--GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQS 150 (582)
T ss_pred cceeeeeeeeeec--chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhh
Confidence 4689999999996 4568999999999999999999999999999999987 433322110 00000
Q ss_pred -hHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHHHH-HHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHH
Q 000904 1056 -LHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWE-VLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCL 1133 (1232)
Q Consensus 1056 -l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~-aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~L 1133 (1232)
++.=-.+.-++.||+.+-.+ .+-+||.. +|.-.|+.+..+..|-+ .||||=|-|++|
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~-----------~~l~ei~~~~L~glGFt~emq~~pt~----------slSGGWrMrlaL 209 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAG-----------LTLEEIYDKILAGLGFTPEMQLQPTK----------SLSGGWRMRLAL 209 (582)
T ss_pred hhhccHHHHHHHHhhhhhhcc-----------chHHHHHHHHHHhCCCCHHHHhcccc----------ccCcchhhHHHH
Confidence 00000111223333322211 14467777 89999998888888764 899999999999
Q ss_pred HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEE
Q 000904 1134 GRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKL 1198 (1232)
Q Consensus 1134 ARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~v 1198 (1232)
||||+.+|+||+|||||++||...-.-+..-|.+. ..|+|+|+||.+++.. |..|+.+++-|+
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999874 4899999999999987 888888876554
No 424
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.86 E-value=1.6e-18 Score=193.45 Aligned_cols=269 Identities=20% Similarity=0.183 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000904 313 FMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGF-KYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRSLLTAAIY 391 (1232)
Q Consensus 313 ~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~iy 391 (1232)
++..++.++..++..+.|++++.+++.+.+++.. ....+.++..+++..++.......+.+...+.+.++|..+...+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999998765443 445666666666677777777777777789999999999999999
Q ss_pred HHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000904 392 KKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVIMITVLCNAPL 470 (1232)
Q Consensus 392 ~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~~~~w~~plqi~~~~~~L~~~lG~-~~l~gl~~~~~~~~~~~~~ 470 (1232)
+|.++++....+++++|+++|.+++|++++.+........+..++..+++...+...++| .+++.+++.++..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 999999998777889999999999999999998876665555555445554555555677 6777777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH--HHH
Q 000904 471 AKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSSPV--LVS 548 (1232)
Q Consensus 471 ~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~--~v~ 548 (1232)
.|+.++..++..++.+++.+.++|.++|+|+||.|++|+.+.+++++.+++..+..+|.....+....+...... .+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887776666666555554443333222 355
Q ss_pred HHHHHHHH-HhCCCcChhhHHHHHHHHHHHHHHH
Q 000904 549 TATFGACY-FLNVPLYASNVFTFVATLRLVQDPI 581 (1232)
Q Consensus 549 ~~tf~~~~-~~~~~Lt~~~vFt~lalf~~l~~pl 581 (1232)
++.++.+. ...+.+|++++++.+.+++.+..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 56678888 7889999999999999999999986
No 425
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=222.63 Aligned_cols=217 Identities=21% Similarity=0.310 Sum_probs=146.8
Q ss_pred CCcceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEEC--CeeCCCCChHh
Q 000904 981 PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD--GIDISKLGLHD 1058 (1232)
Q Consensus 981 p~~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~ID--G~dI~~i~l~~ 1058 (1232)
|....|.++|+++.|.+ .++++|++|++++|++.||+|+|||||||+++++.|-..|..-++.+- ..++..-..+.
T Consensus 71 ~~s~dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred cccccceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence 33456999999999963 468999999999999999999999999999999999998865544331 11111000000
Q ss_pred hhccEEEEccCCCCCcccHH-------hccCCC-CC---CCHHHHHHHHHHcCCcHHHHhh-----ccCCc-ccccCCCC
Q 000904 1059 LRSRFGIIPQDPTLFNGTVR-------YNLDPL-SQ---HTDQEIWEVLAKCHLGEAVREK-----ENGLD-SLVVEDGS 1121 (1232)
Q Consensus 1059 LR~~i~iVpQdP~LF~gTIr-------~NLdp~-~~---~sd~eI~~aL~~~~L~~~i~~~-----p~gLd-t~v~e~G~ 1121 (1232)
+.. -+.+..+.| |+++-. .+ ..-+++++-+...+...+-.+. ..|.. ......-.
T Consensus 149 v~~--------v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~ 220 (614)
T KOG0927|consen 149 VQA--------VVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK 220 (614)
T ss_pred HHH--------HhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh
Confidence 000 011111111 122111 00 1112345545444443322111 01221 12223346
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCc-EEEEEecChhhhhh-cCeEEEEeCCEEE
Q 000904 1122 NWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC-TVITVAHRIPTVMD-CTMVLAISDGKLA 1199 (1232)
Q Consensus 1122 nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~-TVI~IAHrl~ti~~-~DrVlVL~~G~vv 1199 (1232)
+||||||.|++|||||+.+|.+|+|||||++||.++..-+.+-|.+. +. |+++++|.-+++-+ |..|+.|++++.+
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLI 298 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheeccccee
Confidence 89999999999999999999999999999999999999999999873 45 99999999999988 9999999999966
Q ss_pred Eec-ChhHHHh
Q 000904 1200 EYD-EPMKLMK 1209 (1232)
Q Consensus 1200 E~g-~p~~Ll~ 1209 (1232)
-|+ +.++...
T Consensus 299 ~y~Gnydqy~~ 309 (614)
T KOG0927|consen 299 YYEGNYDQYVK 309 (614)
T ss_pred eecCCHHHHhh
Confidence 554 4455543
No 426
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=2.6e-21 Score=207.96 Aligned_cols=168 Identities=21% Similarity=0.215 Sum_probs=120.1
Q ss_pred ceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEEC--Ce---eCCCCChHhhhccEEEEccCCCCCcccH
Q 000904 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVD--GI---DISKLGLHDLRSRFGIIPQDPTLFNGTV 1077 (1232)
Q Consensus 1003 L~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~ID--G~---dI~~i~l~~LR~~i~iVpQdP~LF~gTI 1077 (1232)
++++++++.+| ..+|+|+||||||||+.+|.-... |+.... |. ++-..+ .-...+.+.+|+..++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCC--CCeEEEEEEEEcCCccC---
Confidence 35667777776 668999999999999999874332 222111 22 111111 12456888998876655
Q ss_pred HhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH----ccCCCEEEEeccCCCC
Q 000904 1078 RYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL----LRRSRILVLDEATASI 1153 (1232)
Q Consensus 1078 r~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL----L~~~kILILDEaTs~L 1153 (1232)
| +....+++++.++++. .........+||+|||||++||||+ +.+|++++|||||+++
T Consensus 83 --~--~~~~~~~~~~~~~l~~--------------~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 83 --N--PLCVLSQDMARSFLTS--------------NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred --C--cCCHHHHHHHHHHhcc--------------ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 2 2222233455555544 1112334568999999999999999 6899999999999999
Q ss_pred CHHHHHHHHHHHHHhcC----CcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1154 DNATDMILQKTIRAEFA----DCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1154 D~~T~~~Iq~~L~~~~~----~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
|..+...+.+.|++... ++|+|+++|+++.+.++|+|-||..|+
T Consensus 145 D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 145 DMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999999998887532 358999999999999999999998653
No 427
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.77 E-value=1.1e-17 Score=170.62 Aligned_cols=215 Identities=22% Similarity=0.277 Sum_probs=155.0
Q ss_pred cceEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCC-CChHhhhc
Q 000904 983 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISK-LGLHDLRS 1061 (1232)
Q Consensus 983 ~G~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~-i~l~~LR~ 1061 (1232)
.+.|++.++.|+|.... |++-|+|++++.|.+.-+||.||||||||+++|.|-.-...|.|.+.|.+--. -++.. ..
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~-Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLES-SG 88 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccc-cC
Confidence 46799999999997654 68999999999999999999999999999999999877777999999865421 11100 11
Q ss_pred cEEEEccCC---CCCcccHHhccCCC-CCCCHHHHHHHHHHcCCcHHHHh--hccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1062 RFGIIPQDP---TLFNGTVRYNLDPL-SQHTDQEIWEVLAKCHLGEAVRE--KENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1062 ~i~iVpQdP---~LF~gTIr~NLdp~-~~~sd~eI~~aL~~~~L~~~i~~--~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
..+|.--+= ..+.|.| |. ++.+-++ .+.-++-.++.++ +-.=||-.+.-+-+..|-|||+|+.|+.
T Consensus 89 dl~YLGgeW~~~~~~agev-----plq~D~sae~---mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicM 160 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEV-----PLQGDISAEH---MIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICM 160 (291)
T ss_pred ceeEecccccccccccccc-----cccccccHHH---HHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHH
Confidence 233332221 0111100 11 1223222 2333333333211 1122455555555788999999999999
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh-cCeEEEEeCCEEEE---ecChhHH
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD-CTMVLAISDGKLAE---YDEPMKL 1207 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE---~g~p~~L 1207 (1232)
.||+.=++|+|||-|-.||.-..+.+.+.++++. .++||+..||=.+-+.+ ..+++.|.+|+++. ++.-.|+
T Consensus 161 GLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 161 GLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred hcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhh
Confidence 9999999999999999999999999999998754 58999999999888887 78999999999987 4444443
No 428
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.76 E-value=4e-18 Score=179.99 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1122 NWSMGQRQLFCLGRALL----RRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1122 nLSgGQRQrl~LARALL----~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
.||+|||||++|||++. ++|+++++||||+++|....+.+.+.|++..+ ++|+|+|||+.+.+..+|++++++.
T Consensus 94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 39999999999999985 79999999999999999999999999987644 5899999999999988999999875
No 429
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.9e-16 Score=176.29 Aligned_cols=300 Identities=18% Similarity=0.199 Sum_probs=203.8
Q ss_pred HHHHHHHHhcCchhhhccCChhhHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000904 387 TAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGLATIA-ALVVIMITV 464 (1232)
Q Consensus 387 ~~~iy~K~L~ls~~~~~~~~~G~i~nlms~D~~ri~~~~~~~-~~~w~~plqi~~~~~~L~~~lG~~~l~-gl~~~~~~~ 464 (1232)
.-..|+..+.||-.-..+..+|.+.--|.--.+-|+.+.+++ ..+--..+++.+..+++|+..||.... .++.+++..
T Consensus 18 a~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~ 97 (497)
T COG5265 18 AYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYL 97 (497)
T ss_pred HHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 334566666666543334456665555555555566655544 233345579999999999999985544 444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000904 465 LCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAV----QLRKAYNTFLF 540 (1232)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i~~~R~~E~~~l~k~----~~~~~~~~~~~ 540 (1232)
.+.......--.++++..++..+.-...-+.|-|-.+||.|+-|+.+.++..+..+.-.+.-.|. .++......++
T Consensus 98 ~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~ 177 (497)
T COG5265 98 LFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIF 177 (497)
T ss_pred HhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44444444455555555555555556677889999999999999999888766555433333332 22222222222
Q ss_pred hHhhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCC
Q 000904 541 WSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGN 620 (1232)
Q Consensus 541 ~~~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~ 620 (1232)
.. -+....+-+..-+..+.+|.++.--.-++...+..|++.+....+.+-|++.-.++..+-+..+--..++..-.+-
T Consensus 178 ~~--~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L 255 (497)
T COG5265 178 ST--GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPL 255 (497)
T ss_pred HH--HHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccc
Confidence 21 1122223333345568899999999999999999999999999999999999999998888654222222111110
Q ss_pred CCCCcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccccc
Q 000904 621 IENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 621 ~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~ 690 (1232)
.....+.|.++|++|.|.+ .+|+|+|+||++++|+++++||++|+||||+++.|.+.+++.+|.|..+
T Consensus 256 ~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id 323 (497)
T COG5265 256 WPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITID 323 (497)
T ss_pred cccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEc
Confidence 0014568999999999975 4799999999999999999999999999999999999999999998543
No 430
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.75 E-value=2.6e-18 Score=185.47 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=106.3
Q ss_pred ceeeeEEEeCCc-EEEEECCCCCChHHHHHHHh--------ccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCC
Q 000904 1003 LKGISCTFEGGH-KIGIVGRTGSGKTTLIGALF--------RLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF 1073 (1232)
Q Consensus 1003 L~~vsl~I~~Ge-kvgIVGrtGSGKSTLl~~L~--------rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF 1073 (1232)
..++|+++.+|+ +++|+||||||||||++++. |++-|....+ .+++++|.-..+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence 457899999997 59999999999999999988 5554432111 233444442111
Q ss_pred cccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCC
Q 000904 1074 NGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASI 1153 (1232)
Q Consensus 1074 ~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~L 1153 (1232)
. .+..+.++-+.+|+|+||+..+++++ .+|+++++||||+++
T Consensus 80 g-------------------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 80 G-------------------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred C-------------------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 0 00011122357999999999999984 899999999999999
Q ss_pred CHHHHHHHH-HHHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEEEEe
Q 000904 1154 DNATDMILQ-KTIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKLAEY 1201 (1232)
Q Consensus 1154 D~~T~~~Iq-~~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~ 1201 (1232)
|+++...+. ..+++.. .++|+|++||+.+....||++++|++|+++..
T Consensus 122 D~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 122 DPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 999877764 4555432 37899999999776667999999999999755
No 431
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.7e-18 Score=193.44 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=69.4
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCE
Q 000904 1122 NWSMGQRQLFCLGRALLR----RSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGK 1197 (1232)
Q Consensus 1122 nLSgGQRQrl~LARALL~----~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~ 1197 (1232)
+||+|||||++|||+++. +|+++++||||+++|..+...+.+.|++..+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998767889999999999877799999998763
No 432
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.73 E-value=2.7e-17 Score=183.05 Aligned_cols=178 Identities=28% Similarity=0.403 Sum_probs=138.9
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc--------ccCCccEEEECCeeCCCCChHhhhccEEEEcc--CC
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--------VEPAGGKILVDGIDISKLGLHDLRSRFGIIPQ--DP 1070 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl--------~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQ--dP 1070 (1232)
.+|+|+|++|+|||.++|||.|||||||++++++|. |.|++|.|.+--..+ -+.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCccccc
Confidence 589999999999999999999999999999999986 458899988743212 124444 44
Q ss_pred CCCcccHHhccCCCCCCCH-HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000904 1071 TLFNGTVRYNLDPLSQHTD-QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1071 ~LF~gTIr~NLdp~~~~sd-~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEa 1149 (1232)
.+=+-||-+.+. ....| .--.+.|.++|+.|.+.-.. .-+.||-|||-|..||+++..+|++++.||.
T Consensus 466 ~f~~~tilehl~--s~tGD~~~AveILnraGlsDAvlyRr---------~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 466 EFGEVTILEHLR--SKTGDLNAAVEILNRAGLSDAVLYRR---------KFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred ccCchhHHHHHh--hccCchhHHHHHHHhhccchhhhhhc---------cHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 443446665552 22222 23457899999988765321 1247999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCcEEEEEecChhhhhh--cCeEEEEeCCEEEE
Q 000904 1150 TASIDNATDMILQKTIRAEF--ADCTVITVAHRIPTVMD--CTMVLAISDGKLAE 1200 (1232)
Q Consensus 1150 Ts~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl~ti~~--~DrVlVL~~G~vvE 1200 (1232)
-|+||..|...+.+.|.+.. .+.|++.||||.+.+.. -|+++.+.-|++..
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 99999999999888887754 58999999999999865 59998887776543
No 433
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.73 E-value=7.4e-17 Score=193.41 Aligned_cols=112 Identities=21% Similarity=0.357 Sum_probs=97.7
Q ss_pred CCcc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhh
Q 000904 1111 GLDS-LVVEDGSNWSMGQRQLFCLGRALLRRS---RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVM 1185 (1232)
Q Consensus 1111 gLdt-~v~e~G~nLSgGQRQrl~LARALL~~~---kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~ 1185 (1232)
||.. .+|.....|||||.||+-||.-|.+++ -+.||||||.+|-.+--+.+++.|.+.- +|.|||+|-|.|+.|+
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 6666 567888899999999999999999988 8999999999999998888888888743 5889999999999999
Q ss_pred hcCeEEEE------eCCEEEEecChhHHHhhcCCHHHHHHHHH
Q 000904 1186 DCTMVLAI------SDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1186 ~~DrVlVL------~~G~vvE~g~p~~Ll~~~~~~f~~l~~~~ 1222 (1232)
.||.|+-| +.|+|+..|+|+++.+.++|+=.+..+++
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk~~ 932 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKKY 932 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHHHH
Confidence 99999988 46899999999999998777655555543
No 434
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=2.5e-17 Score=207.24 Aligned_cols=200 Identities=26% Similarity=0.274 Sum_probs=164.4
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCChHhhhccEEEEccCCCCC-cc
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPA---GGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF-NG 1075 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~---~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF-~g 1075 (1232)
..+|+|+|.-++|||.+-+.||.|||||||+++|+|-.+-. .|+|.+||.|.++.-. ++.++|++|+-..| .-
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 46899999999999999999999999999999999988642 5799999999988766 78899999988777 55
Q ss_pred cHHhccCCC-------C---CCCHHH-----HHHHHHHcCCcHHHHhhccCCcccccCCC-CCCChhHHHHHHHHHHHcc
Q 000904 1076 TVRYNLDPL-------S---QHTDQE-----IWEVLAKCHLGEAVREKENGLDSLVVEDG-SNWSMGQRQLFCLGRALLR 1139 (1232)
Q Consensus 1076 TIr~NLdp~-------~---~~sd~e-----I~~aL~~~~L~~~i~~~p~gLdt~v~e~G-~nLSgGQRQrl~LARALL~ 1139 (1232)
|||+-||.. . +.++.| ...+++..||+ ...||.||++. ...|||||.|+.+|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~-------~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLD-------HCADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCch-------hhccceecccccccccCcccceeeeeeeeec
Confidence 999998732 1 222333 12344444443 56889998764 5789999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEEecCh--hhhhhcCeEEEEeCCEEEEecChhHHHh
Q 000904 1140 RSRILVLDEATASIDNATDMILQKTIRAEF--ADCTVITVAHRI--PTVMDCTMVLAISDGKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1140 ~~kILILDEaTs~LD~~T~~~Iq~~L~~~~--~~~TVI~IAHrl--~ti~~~DrVlVL~~G~vvE~g~p~~Ll~ 1209 (1232)
+++++.+||+|.+||..|.-.+.+.||+.- -+.|+++.=|.. ++..-.|+|++|.+|+++-+|+-++.+.
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999999999999843 367777766664 4555589999999999999999888863
No 435
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.71 E-value=3.4e-17 Score=177.91 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=67.6
Q ss_pred cCCCCCCChhHHHHHHHHHHH----ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--C-cEEEEEecChhhhhh-cC
Q 000904 1117 VEDGSNWSMGQRQLFCLGRAL----LRRSRILVLDEATASIDNATDMILQKTIRAEFA--D-CTVITVAHRIPTVMD-CT 1188 (1232)
Q Consensus 1117 ~e~G~nLSgGQRQrl~LARAL----L~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~--~-~TVI~IAHrl~ti~~-~D 1188 (1232)
..++..||+|||||+.+|+++ +.+|+++++||||++||+.+...+.+.|++..+ + .|+|+|||++..+.+ +|
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 346679999999998877554 589999999999999999999999999987543 3 479999999876654 54
Q ss_pred --eEEEEeCCE
Q 000904 1189 --MVLAISDGK 1197 (1232)
Q Consensus 1189 --rVlVL~~G~ 1197 (1232)
+|++|++|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 889999886
No 436
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.69 E-value=8.2e-17 Score=181.57 Aligned_cols=187 Identities=25% Similarity=0.343 Sum_probs=126.9
Q ss_pred eeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCee-----CCCCC---hHh---
Q 000904 990 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGID-----ISKLG---LHD--- 1058 (1232)
Q Consensus 990 nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~d-----I~~i~---l~~--- 1058 (1232)
++.-||..+. ..|.++= ..++|+.+||+|+||-||||-++.|.|.+.|.=|+- |+-+ |.... +++
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHH
Confidence 3456786554 2343332 357899999999999999999999999999987752 2210 00000 010
Q ss_pred ------hh--ccEEEEccCCCCCcccHHhccCCCCCCCHHHHHHHHHHcCC-cHHHHhhccCCcccccCCCCCCChhHHH
Q 000904 1059 ------LR--SRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLAKCHL-GEAVREKENGLDSLVVEDGSNWSMGQRQ 1129 (1232)
Q Consensus 1059 ------LR--~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L-~~~i~~~p~gLdt~v~e~G~nLSgGQRQ 1129 (1232)
+| .++.||.-=|-.+.|+|++-|.- .+.-|- ++.++.+ +|+..+..+-++|||||-|
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~------------~de~g~~devve~l--~L~nvl~r~v~~LSGGELQ 220 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK------------VDERGKFDEVVERL--GLENVLDRDVSELSGGELQ 220 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHh------------hhhcCcHHHHHHHh--cchhhhhhhhhhcCchHHH
Confidence 00 11222222334455555543321 111122 2223322 4555555666789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEEecChhhhhh-cCeEEEEe
Q 000904 1130 LFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFA-DCTVITVAHRIPTVMD-CTMVLAIS 1194 (1232)
Q Consensus 1130 rl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~-~~TVI~IAHrl~ti~~-~DrVlVL~ 1194 (1232)
|++||-|++|+.++.++|||||-||....-..-+.||+..+ +++||+|-|||..+.- +|-|-++-
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999888999998766 6999999999988765 78777663
No 437
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.68 E-value=6.2e-17 Score=178.77 Aligned_cols=193 Identities=15% Similarity=0.217 Sum_probs=132.8
Q ss_pred EEEeCCcEEEEECCCCCChHHHHHHHhccccCCcc--EEEECCeeCCCCChHhhhccE--EEEccCCCCCcccHHhccCC
Q 000904 1008 CTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGG--KILVDGIDISKLGLHDLRSRF--GIIPQDPTLFNGTVRYNLDP 1083 (1232)
Q Consensus 1008 l~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G--~I~IDG~dI~~i~l~~LR~~i--~iVpQdP~LF~gTIr~NLdp 1083 (1232)
+.+.+||+++|+|++|+|||||++.+.+.++...+ .+.+-.+.-+..+..++.+.+ .+|-.+- +.+-.....
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~- 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQ- 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHH-
Confidence 47889999999999999999999999999887633 323222222223445544443 0111100 000000000
Q ss_pred CCCCCHHHHHHHHH---HcC-----CcHHHHhhccCCcccccCCCCCCChhH--------HHHHHHHHHHccCCCEEEEe
Q 000904 1084 LSQHTDQEIWEVLA---KCH-----LGEAVREKENGLDSLVVEDGSNWSMGQ--------RQLFCLGRALLRRSRILVLD 1147 (1232)
Q Consensus 1084 ~~~~sd~eI~~aL~---~~~-----L~~~i~~~p~gLdt~v~e~G~nLSgGQ--------RQrl~LARALL~~~kILILD 1147 (1232)
.-..+.+.++ ..| +-|.+.+++.++++.+++.|.++|||| |||+++||+++++++|.+|
T Consensus 87 ----~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 87 ----VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred ----HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 0011111112 223 236678889999999999999999999 9999999999999999999
Q ss_pred ccCCCCCHHHHH--HHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHHHhhcCCHHHHH
Q 000904 1148 EATASIDNATDM--ILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQL 1218 (1232)
Q Consensus 1148 EaTs~LD~~T~~--~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~Ll~~~~~~f~~l 1218 (1232)
||+.+|..++. .+.+.++. .+.|.|+++||+.+..++|.|.||+.|.+ +++++.+ ++.|+.+
T Consensus 162 -~T~~~d~~~~~~~~i~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~ 225 (249)
T cd01128 162 -ATALVDTGSRMDDVIFEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRM 225 (249)
T ss_pred -eeheecCCCcccchHHHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHH
Confidence 99999976554 34333332 46899999999999999999999999997 6777754 4566655
No 438
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.68 E-value=1.4e-16 Score=165.98 Aligned_cols=135 Identities=21% Similarity=0.276 Sum_probs=99.7
Q ss_pred eEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE-EEccCCCCCcccHHhccCCCC
Q 000904 1007 SCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG-IIPQDPTLFNGTVRYNLDPLS 1085 (1232)
Q Consensus 1007 sl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~-iVpQdP~LF~gTIr~NLdp~~ 1085 (1232)
++.+.++..+.|+|||||||||+++++.-..-..+|.+.... ++ +.+ .+|+...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344455569999999999999999997666555555544310 00 111 122221111
Q ss_pred CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHcc----CCCEEEEeccCCCCCHHHHHHH
Q 000904 1086 QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLR----RSRILVLDEATASIDNATDMIL 1161 (1232)
Q Consensus 1086 ~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~----~~kILILDEaTs~LD~~T~~~I 1161 (1232)
+... .++|+||+||+.|||+|.. +|+++++|||++++|++....+
T Consensus 72 -------------------i~~~------------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 72 -------------------IFTR------------LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred -------------------ehhe------------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 0000 1299999999999999986 7899999999999999999999
Q ss_pred HHHHHHhcC-CcEEEEEecChhhhhhcCeEEEEeC
Q 000904 1162 QKTIRAEFA-DCTVITVAHRIPTVMDCTMVLAISD 1195 (1232)
Q Consensus 1162 q~~L~~~~~-~~TVI~IAHrl~ti~~~DrVlVL~~ 1195 (1232)
.+.+.+... ++|+|++||+.+....+|+++.|+.
T Consensus 121 ~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 998887543 5899999999999999999999864
No 439
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.68 E-value=2.3e-16 Score=209.16 Aligned_cols=214 Identities=19% Similarity=0.253 Sum_probs=147.0
Q ss_pred cceeeeEEEeCCcEEEEECCCCCChHHHHHHHh-c-----c---ccCCccEEEECCeeCCCCC----------hHhhhcc
Q 000904 1002 VLKGISCTFEGGHKIGIVGRTGSGKTTLIGALF-R-----L---VEPAGGKILVDGIDISKLG----------LHDLRSR 1062 (1232)
Q Consensus 1002 vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~-r-----l---~ep~~G~I~IDG~dI~~i~----------l~~LR~~ 1062 (1232)
=|||++.+|+-|..++|.|-||||||||++-.+ . + .+.-+--|.||-.+|..-+ .+++|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997444 1 1 1222344777766664433 2233443
Q ss_pred EEEEcc------CCCCCc--------------ccHHhccCCC------------CCCCHH-----------------HHH
Q 000904 1063 FGIIPQ------DPTLFN--------------GTVRYNLDPL------------SQHTDQ-----------------EIW 1093 (1232)
Q Consensus 1063 i~iVpQ------dP~LF~--------------gTIr~NLdp~------------~~~sd~-----------------eI~ 1093 (1232)
.+=.|+ .|..|+ |.++-++... ..|.+| .|.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 332222 122222 1122111100 011111 134
Q ss_pred HHHHHcCCcHHHHh-----hccCCcc-cccCCCCCCChhHHHHHHHHHHHccC---CCEEEEeccCCCCCHHHHHHHHHH
Q 000904 1094 EVLAKCHLGEAVRE-----KENGLDS-LVVEDGSNWSMGQRQLFCLGRALLRR---SRILVLDEATASIDNATDMILQKT 1164 (1232)
Q Consensus 1094 ~aL~~~~L~~~i~~-----~p~gLdt-~v~e~G~nLSgGQRQrl~LARALL~~---~kILILDEaTs~LD~~T~~~Iq~~ 1164 (1232)
||++-..-.+.+.+ ..-||.. .+|..-..|||||.|||-||.-|.++ +.++||||||.+|+++.-+.+.+.
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~ 1744 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ 1744 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 44444321111211 1236666 56788889999999999999999876 689999999999999999999998
Q ss_pred HHHh-cCCcEEEEEecChhhhhhcCeEEEEe------CCEEEEecChhHHHhhcCCHH
Q 000904 1165 IRAE-FADCTVITVAHRIPTVMDCTMVLAIS------DGKLAEYDEPMKLMKREGSLF 1215 (1232)
Q Consensus 1165 L~~~-~~~~TVI~IAHrl~ti~~~DrVlVL~------~G~vvE~g~p~~Ll~~~~~~f 1215 (1232)
+++. -++.|||+|.|+++.+..||.|+-|. .|+|+..|+|+++.++++|.=
T Consensus 1745 l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t 1802 (1809)
T PRK00635 1745 LRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLL 1802 (1809)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcH
Confidence 8774 35899999999999999999999984 589999999999999887753
No 440
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=4.2e-16 Score=170.46 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=112.5
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEE-EEccCCCCCcccHH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFG-IIPQDPTLFNGTVR 1078 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~-iVpQdP~LF~gTIr 1078 (1232)
..+.+|+++++++|+.++|.|+||+||||+++.+.- -.+..++| +||.+...+.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe----
Confidence 468999999999999999999999999999999871 12334555 7777753211
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEecc---CCCC
Q 000904 1079 YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL--LRRSRILVLDEA---TASI 1153 (1232)
Q Consensus 1079 ~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL--L~~~kILILDEa---Ts~L 1153 (1232)
++ .+++++.++.+.. ..++|.|++|+..+++++ +.+|++++|||| |+++
T Consensus 72 ----~~--------~~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 72 ----IV--------DCILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred ----cc--------ceeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 11 1223334443321 136899999999999999 899999999999 9999
Q ss_pred CHHHHHH-HHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecC
Q 000904 1154 DNATDMI-LQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDE 1203 (1232)
Q Consensus 1154 D~~T~~~-Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~ 1203 (1232)
|...... +.+.+.+ ..++|+|++||..+...-||++..+++|++...++
T Consensus 126 D~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 126 DGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9876543 3255543 24799999999755544599999999999976554
No 441
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.63 E-value=1.5e-12 Score=156.58 Aligned_cols=309 Identities=19% Similarity=0.255 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChh------hHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHH
Q 000904 371 WYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGG------EIMNYVTVDAYRIGEFPFWFHQ-IWTTSVQLCIALI 443 (1232)
Q Consensus 371 ~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G------~i~nlms~D~~ri~~~~~~~~~-~w~~plqi~~~~~ 443 (1232)
..|..+++.++.|..|.....+|=|.-...-+-. ..| ..=..++.|+..+.+....+.. +-...++++--..
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~-~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~ 184 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA-QAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG 184 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH-hcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999988766433211 122 2235788888777665443332 2233344444455
Q ss_pred HHHHHHHHHH---------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHHhch
Q 000904 444 ILFHAVGLAT---------IAAL--VVIMITVLCNAPLAKLQHKFQTKLMVA-----QDERLKACSEALVNMKVLKLYAW 507 (1232)
Q Consensus 444 ~L~~~lG~~~---------l~gl--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~R~~~~~E~L~~ir~iK~~~w 507 (1232)
+||...|..+ +.|. .++++.++....++-+.++--.++... -|=|-. ...+.++--.|-+|..
T Consensus 185 iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~-Lvrv~enaE~IAly~G 263 (604)
T COG4178 185 ILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS-LVRVRENAEAIALYRG 263 (604)
T ss_pred HHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH-HHHHHhhHHHHHHhcC
Confidence 6775544221 1111 122233344444443333322222222 233333 3356778888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhH---hhHHHHHHHHHHHHHhCCCcChhhHHHHHHHHHHHHHH
Q 000904 508 ETHFKNAIEILRNVEYKWLSAVQLRK----AYNTFLFWS---SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDP 580 (1232)
Q Consensus 508 E~~f~~~i~~~R~~E~~~l~k~~~~~----~~~~~~~~~---~p~~v~~~tf~~~~~~~~~Lt~~~vFt~lalf~~l~~p 580 (1232)
|+.-.+++.+.=..=++..++..... .+.....++ .|.++. +=.+..++++-+.+-++-..|+.+...
T Consensus 264 E~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~-----ap~~f~g~i~~G~lmqa~~aF~~v~ss 338 (604)
T COG4178 264 EKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIA-----APRYFSGQITFGGLMQAVGAFGQVHSS 338 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhc-----cHhhhcCcChHHHHHHHHHHHHHHHHH
Confidence 99887776653333222222221111 111112222 222221 112567889999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhCCCC---CCc---chh-cccCCCCCCcceEEEEeeEEEecCCCCCCceeeeEEEe
Q 000904 581 IRVIPDVIGVFIQANVAFSRIVNFLEAPE---LQS---MNI-RQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEV 653 (1232)
Q Consensus 581 l~~lp~~i~~~~~a~vs~~Ri~~fL~~~e---~~~---~~~-~~~~~~~~~~~~I~i~~~sfsw~~~~~~~~L~~inl~i 653 (1232)
++.+-.....+++-+.++.|+.+|-++=| .++ ... .+....++.+..|+++|++..-|+. ++.+++.|++|
T Consensus 339 lswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v 416 (604)
T COG4178 339 LSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEV 416 (604)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--Ceeeccceeee
Confidence 99999999999999999999999974311 111 100 0000000025789999999998754 48999999999
Q ss_pred cCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 654 ~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++||.+.|.|+||||||||+++|.|.-|--+|++.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~ 451 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRIS 451 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCcee
Confidence 99999999999999999999999999999999874
No 442
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.3e-15 Score=170.16 Aligned_cols=188 Identities=22% Similarity=0.302 Sum_probs=114.0
Q ss_pred ceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccC-----------------------------------------Cc
Q 000904 1003 LKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEP-----------------------------------------AG 1041 (1232)
Q Consensus 1003 L~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep-----------------------------------------~~ 1041 (1232)
+++.++++.+| ...|+|+|||||||++.+|.=+... .+
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34556777776 5789999999999999886433211 01
Q ss_pred cEEEECCeeCCCCChHhh---hccEEEEccCCCCCcccHHhc---cCCCCCCCHHH---HHHHHHHcCCcHHHHh---hc
Q 000904 1042 GKILVDGIDISKLGLHDL---RSRFGIIPQDPTLFNGTVRYN---LDPLSQHTDQE---IWEVLAKCHLGEAVRE---KE 1109 (1232)
Q Consensus 1042 G~I~IDG~dI~~i~l~~L---R~~i~iVpQdP~LF~gTIr~N---Ldp~~~~sd~e---I~~aL~~~~L~~~i~~---~p 1109 (1232)
.++.+||..++. +.++ -..+.+-|++..|+.++-.+. +|-+....+.+ .++..+++ ...... -|
T Consensus 91 ~~~~ing~~~~~--l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~g~ 166 (270)
T cd03242 91 RKARLNGIKVRR--LSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKA--LRQRNALLKGP 166 (270)
T ss_pred eEEEECCeeccC--HHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHhCCC
Confidence 134566665544 3333 334666677777775533222 22211111111 12212111 000011 12
Q ss_pred cCCcccccCC----CCCCChhHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 000904 1110 NGLDSLVVED----GSNWSMGQRQLFCLGRALL---------RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVIT 1176 (1232)
Q Consensus 1110 ~gLdt~v~e~----G~nLSgGQRQrl~LARALL---------~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~ 1176 (1232)
..-|..+.-+ -..+|+||||+++|||+|+ ++|++++|||||++||+...+.+.+.+++. . .+++
T Consensus 167 ~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~ii 243 (270)
T cd03242 167 HRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QTFV 243 (270)
T ss_pred ChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CEEE
Confidence 2211111111 2347999999999999984 799999999999999999999999999763 2 4555
Q ss_pred EecChhhhhh-c---CeEEEEeCCEE
Q 000904 1177 VAHRIPTVMD-C---TMVLAISDGKL 1198 (1232)
Q Consensus 1177 IAHrl~ti~~-~---DrVlVL~~G~v 1198 (1232)
++|+.+.+.+ | ++|+.+++|++
T Consensus 244 ~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 244 TTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EeCCchhccchhccCccEEEEeCcEE
Confidence 5555555544 4 68999999986
No 443
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.60 E-value=1.2e-15 Score=165.03 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=102.5
Q ss_pred eeEEEeCCcEEEEECCCCCChHHHHHHHhcc-ccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhccCCC
Q 000904 1006 ISCTFEGGHKIGIVGRTGSGKTTLIGALFRL-VEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL 1084 (1232)
Q Consensus 1006 vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl-~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~NLdp~ 1084 (1232)
.++++.+|++++|+|+|||||||+++++.+. +.+..|...-. -+.++++..|....|..
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-----------~~~~i~~~dqi~~~~~~--------- 81 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-----------ESASIPLVDRIFTRIGA--------- 81 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-----------cccccCCcCEEEEEecC---------
Confidence 4566779999999999999999999999843 22222321110 01233333222211110
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHH-H
Q 000904 1085 SQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQ-K 1163 (1232)
Q Consensus 1085 ~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq-~ 1163 (1232)
+..+.++-+.++.++|| +..+.+++.+|++++|||||+++|+.....+. .
T Consensus 82 ----------------------------~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 82 ----------------------------EDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred ----------------------------cccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 00111222456777776 55556778899999999999999998665543 3
Q ss_pred HHHHhc-CCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 000904 1164 TIRAEF-ADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1164 ~L~~~~-~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
.++... .++|+|++||+.+.+..+|++..+++|++.+.+++.++
T Consensus 133 ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 133 VLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 344321 47899999999999999999999999999988876554
No 444
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.56 E-value=2.2e-12 Score=150.49 Aligned_cols=319 Identities=18% Similarity=0.184 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCChhhHH---HHHHHHHHHHhHHH-HHHHHHHHHHHHHHH
Q 000904 365 SLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIM---NYVTVDAYRIGEFP-FWFHQIWTTSVQLCI 440 (1232)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~R~~l~~~iy~K~L~ls~~~~~~~~~G~i~---nlms~D~~ri~~~~-~~~~~~w~~plqi~~ 440 (1232)
++...-..|...-+..|.|.-+..-+|++=++-..--+-++..+.|. .+++.|++|+.... .....+-.+|+-++.
T Consensus 136 s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~ 215 (659)
T KOG0060|consen 136 SLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVY 215 (659)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeeh
Confidence 44445577888889999999999999998876432221111222233 47888999886643 344556678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhchhHHHHHHH
Q 000904 441 ALIILFHAVGLATIAALVVIM-ITVLCNA----PLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAI 515 (1232)
Q Consensus 441 ~~~~L~~~lG~~~l~gl~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ir~iK~~~wE~~f~~~i 515 (1232)
-.+.+|...||...+.+..-+ +-..+|. ++++++.+-|+..- |=|-+- +++..|-..|-+|+.+..-...+
T Consensus 216 Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEG---dfRy~h-~rlr~NaE~iAFY~g~~~E~~~~ 291 (659)
T KOG0060|consen 216 YTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEG---DFRYKH-SRLRVNAEEIAFYRGGQVEHQRT 291 (659)
T ss_pred hhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhc---chhhhe-eeeeecchhhhhhccCchHHHHH
Confidence 999999998885544433222 2333333 44455444444333 333332 24555667788899888766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH---HHhC---CCcChhhHHHHHH----HHHHHHHHHHHhH
Q 000904 516 EILRNVEYKWLSAVQLRKAYNTFLFWSSPVLVSTATFGAC---YFLN---VPLYASNVFTFVA----TLRLVQDPIRVIP 585 (1232)
Q Consensus 516 ~~~R~~E~~~l~k~~~~~~~~~~~~~~~p~~v~~~tf~~~---~~~~---~~Lt~~~vFt~la----lf~~l~~pl~~lp 585 (1232)
...=+.=++.+++.....-...++-...--+..++.+.+. ++.| +.+++++.++-++ .|.-|...+..+.
T Consensus 292 ~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~ 371 (659)
T KOG0060|consen 292 DQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLV 371 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5544444444444433322222221111122222222111 1223 3467777665542 2223333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCC-------------cchhc---ccC---CCCCCcceEEEEeeEEEecCCCCCCc
Q 000904 586 DVIGVFIQANVAFSRIVNFLEA-PELQ-------------SMNIR---QKG---NIENVNHVISIKSASFSWEESSSKPT 645 (1232)
Q Consensus 586 ~~i~~~~~a~vs~~Ri~~fL~~-~e~~-------------~~~~~---~~~---~~~~~~~~I~i~~~sfsw~~~~~~~~ 645 (1232)
..-..+.+-..=..||.++.+. +++. ..... ..| ...+.+.+|++++++++-|++ ...+
T Consensus 372 ~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~l 450 (659)
T KOG0060|consen 372 DLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLL 450 (659)
T ss_pred HHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-Ccee
Confidence 4444455555556677776531 1111 00000 011 111256899999999998875 3356
Q ss_pred eeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 646 L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+|+||+|+.|+-+.|+||+|||||||++.+.|.-|..+|++.
T Consensus 451 ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~ 493 (659)
T KOG0060|consen 451 IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLT 493 (659)
T ss_pred eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEE
Confidence 7789999999999999999999999999999999998888873
No 445
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.53 E-value=2.4e-14 Score=154.02 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=91.2
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCC-cccHH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLF-NGTVR 1078 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF-~gTIr 1078 (1232)
+.|++|++++ +|+.++|+||||||||||++++.+... +..+|.++... .+++|+..+| .-|++
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 3577887665 579999999999999999999977553 22356555321 2566744444 55889
Q ss_pred hccCCCCCCCH---HHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCH
Q 000904 1079 YNLDPLSQHTD---QEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDN 1155 (1232)
Q Consensus 1079 ~NLdp~~~~sd---~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~ 1155 (1232)
+|+........ +++.++|+.++ +++|+++++||||+++|+
T Consensus 78 d~l~~~~s~~~~e~~~~~~iL~~~~-------------------------------------~~~p~llllDEp~~glD~ 120 (199)
T cd03283 78 DDLRDGISYFYAELRRLKEIVEKAK-------------------------------------KGEPVLFLLDEIFKGTNS 120 (199)
T ss_pred hccccccChHHHHHHHHHHHHHhcc-------------------------------------CCCCeEEEEecccCCCCH
Confidence 88853221112 22333333322 179999999999999999
Q ss_pred HHHHHHH-HHHHHh-cCCcEEEEEecChhhhhhc
Q 000904 1156 ATDMILQ-KTIRAE-FADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1156 ~T~~~Iq-~~L~~~-~~~~TVI~IAHrl~ti~~~ 1187 (1232)
.+...+. ..+++. .++.|+|++||+++.+...
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 8776554 345442 2478999999999887653
No 446
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=2.5e-14 Score=182.88 Aligned_cols=102 Identities=24% Similarity=0.307 Sum_probs=89.6
Q ss_pred CCccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh
Q 000904 1111 GLDSL-VVEDGSNWSMGQRQLFCLGRALLRRS--RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1111 gLdt~-v~e~G~nLSgGQRQrl~LARALL~~~--kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~ 1186 (1232)
||+.. .+.....|||||+||+.|||||..+| +++||||||++||++..+.+.+.|++.. ++.|||+|+||++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 45443 45567799999999999999999986 8999999999999999999999998753 47899999999999999
Q ss_pred cCeEEEE------eCCEEEEecChhHHHhhcC
Q 000904 1187 CTMVLAI------SDGKLAEYDEPMKLMKREG 1212 (1232)
Q Consensus 1187 ~DrVlVL------~~G~vvE~g~p~~Ll~~~~ 1212 (1232)
||+|++| ++|+|++.|+|+++...++
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~~~ 586 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILANPD 586 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcCch
Confidence 9999999 8999999999999875433
No 447
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.52 E-value=5.5e-14 Score=157.12 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=104.4
Q ss_pred cEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-hHhhhccEEEEccCCCCCcccHHhccCCCCCCCHHHH
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLG-LHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEI 1092 (1232)
Q Consensus 1014 ekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~-l~~LR~~i~iVpQdP~LF~gTIr~NLdp~~~~sd~eI 1092 (1232)
..++|+|+||||||||+++|.|++.|.+|+|.+||.++..++ .++++..++++||+..--.-++.+|.. ..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k~-- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------KA-- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------HH--
Confidence 678999999999999999999999999999999999998775 678888889999976322223332210 00
Q ss_pred HHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCc
Q 000904 1093 WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC 1172 (1232)
Q Consensus 1093 ~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~ 1172 (1232)
.| ...++|+ .+|+++++|||++. +.+...++....+.
T Consensus 184 --------------------------------~~---~~~~i~~--~~P~villDE~~~~------e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 184 --------------------------------EG---MMMLIRS--MSPDVIVVDEIGRE------EDVEALLEALHAGV 220 (270)
T ss_pred --------------------------------HH---HHHHHHh--CCCCEEEEeCCCcH------HHHHHHHHHHhCCC
Confidence 01 2445555 49999999999842 33444444333689
Q ss_pred EEEEEecChhh--h------------hhcCeEEEEeCCEEEEecChhHHH
Q 000904 1173 TVITVAHRIPT--V------------MDCTMVLAISDGKLAEYDEPMKLM 1208 (1232)
Q Consensus 1173 TVI~IAHrl~t--i------------~~~DrVlVL~~G~vvE~g~p~~Ll 1208 (1232)
|+|+++|+.+. + .-+||+++|++|+ ..|++++++
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99999997655 3 1279999999887 777777665
No 448
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.4e-14 Score=167.60 Aligned_cols=119 Identities=19% Similarity=0.246 Sum_probs=96.8
Q ss_pred CCCcChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhcccCCCCCCcceEEEEeeEEEec
Q 000904 559 NVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNHVISIKSASFSWE 638 (1232)
Q Consensus 559 ~~~Lt~~~vFt~lalf~~l~~pl~~lp~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~~I~i~~~sfsw~ 638 (1232)
.++++|+++|+++++|+.++.|+..+|..... .+|+..|+..+|.+...+.... +..+.|+++|++++|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~nls~~y~ 91 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDF---NHANVFEIRNFNFWYM 91 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCC---CcCceEEEEeeEEEec
Confidence 35789999999999999999999988865443 5699999988775542221111 1456899999999996
Q ss_pred CCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCC-----Ccccccc
Q 000904 639 ESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIL 688 (1232)
Q Consensus 639 ~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~-----~~~G~v~ 688 (1232)
.. .+++|+|+||+|++||+++|+|++|||||||+++|+|+++ |.+|.|.
T Consensus 92 ~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~ 145 (329)
T PRK14257 92 NR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145 (329)
T ss_pred CC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence 42 3579999999999999999999999999999999999997 4578763
No 449
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.52 E-value=2.4e-14 Score=183.37 Aligned_cols=101 Identities=24% Similarity=0.316 Sum_probs=89.5
Q ss_pred CCccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEEecChhhhhh
Q 000904 1111 GLDSL-VVEDGSNWSMGQRQLFCLGRALLRRS--RILVLDEATASIDNATDMILQKTIRAEF-ADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1111 gLdt~-v~e~G~nLSgGQRQrl~LARALL~~~--kILILDEaTs~LD~~T~~~Iq~~L~~~~-~~~TVI~IAHrl~ti~~ 1186 (1232)
||+.. ......+||||||||+.|||||..+| +++||||||++||++..+.+.+.|++.. .+.|||+|+||++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 45433 45566789999999999999999987 9999999999999999999999998753 47899999999999989
Q ss_pred cCeEEEE------eCCEEEEecChhHHHhhc
Q 000904 1187 CTMVLAI------SDGKLAEYDEPMKLMKRE 1211 (1232)
Q Consensus 1187 ~DrVlVL------~~G~vvE~g~p~~Ll~~~ 1211 (1232)
||+|++| ++|+|+..|+++++++.+
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~~ 587 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKNP 587 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcCh
Confidence 9999999 999999999999997653
No 450
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.52 E-value=1.3e-14 Score=137.75 Aligned_cols=75 Identities=24% Similarity=0.201 Sum_probs=70.7
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcccHHhc
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYN 1080 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~gTIr~N 1080 (1232)
++|++++|++++||.++|+|+||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+|||+|
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999999999999999999999 999999999
Q ss_pred cCC
Q 000904 1081 LDP 1083 (1232)
Q Consensus 1081 Ldp 1083 (1232)
|..
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 963
No 451
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.51 E-value=6.6e-12 Score=140.08 Aligned_cols=219 Identities=21% Similarity=0.286 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 000904 718 STLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYSNL 797 (1232)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~~~~~l~~~~~~~~~~l~~l 797 (1232)
...+.....+.....+.+...+++.++++++++.|.++|+++++|++++|+++|.+.++......+...+......+..+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~ 133 (275)
T PF00664_consen 54 IFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSL 133 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhh
Confidence 33344444444567788899999999999999999999999999999999999999999988888888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcchHHHHHHHHHHHHHhc
Q 000904 798 GVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTN 877 (1232)
Q Consensus 798 ~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~~~~~f~~~~~~~~d~~ 877 (1232)
+++...+|.+.++.+....+.......+.+..++..+......+...+++.|.++|+++||+|+.|+++.++..+..++.
T Consensus 134 ~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~ 213 (275)
T PF00664_consen 134 ILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKY 213 (275)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999998887777777777777777777777777777788899999999999999999999999999999888887
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-cCCCCcchHHHHHHHHHHHHHHHH
Q 000904 878 ASPFFQTFAANEWLIQRLETLSATVISSAA-FCMVL-LPPGTFTPGFIGMALSYGLSLNSS 936 (1232)
Q Consensus 878 ~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~-~~~g~~~~g~~gl~l~~~~~l~~~ 936 (1232)
.+........+.+.....+.+......... ..... ...|.+++|.+...+.|...+..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 214 RKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 777666666666666666665555333322 23344 568889999988888887766554
No 452
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.6e-14 Score=157.44 Aligned_cols=206 Identities=24% Similarity=0.336 Sum_probs=126.3
Q ss_pred eEEEEeeEeEecCCCCccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhcc--ccCCccEEEECCeeCCCCC-------
Q 000904 985 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRL--VEPAGGKILVDGIDISKLG------- 1055 (1232)
Q Consensus 985 ~I~~~nvs~~Y~~~~~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl--~ep~~G~I~IDG~dI~~i~------- 1055 (1232)
.|.++|.+.+- .....+.|-|+.|-.|.+.|+|||||-|||||++.+.-- --|..=.+++..+.+-.-+
T Consensus 264 DIKiEnF~ISA--~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISA--QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeec--ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 47788877764 345678899999999999999999999999999988531 1122222222222211000
Q ss_pred hHhhhccEEEEccCCC----CCcc--cHHhccCCCCCCCHHHHHHHHHHcCCcHHHH---hh--ccCCcccccCCC-CCC
Q 000904 1056 LHDLRSRFGIIPQDPT----LFNG--TVRYNLDPLSQHTDQEIWEVLAKCHLGEAVR---EK--ENGLDSLVVEDG-SNW 1123 (1232)
Q Consensus 1056 l~~LR~~i~iVpQdP~----LF~g--TIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~---~~--p~gLdt~v~e~G-~nL 1123 (1232)
++.=.+|+.++-.+.- +-.| |..+.+ +++.+-|+..|....-. +. -.|++-.+.+.+ ..+
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl--------~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERL--------KEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF 413 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHH--------HHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence 0000001111100000 0000 111110 12222233333221100 00 124455554444 469
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh-cCeEEEEeCCEEEEec
Q 000904 1124 SMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD-CTMVLAISDGKLAEYD 1202 (1232)
Q Consensus 1124 SgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~-~DrVlVL~~G~vvE~g 1202 (1232)
|||=|-|++|||||...|-+|.|||||++||...---+-..|+.. .+|.++|+||-.++.+ |..|+.||+-++-.|-
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999999987655555666654 4699999999999988 9999999988876543
No 453
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.42 E-value=2.1e-13 Score=149.37 Aligned_cols=59 Identities=32% Similarity=0.619 Sum_probs=55.6
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.++++|++|+|+ ++++|+|+||+|++||+++|+|||||||||||++|+|.++|.+|+|.
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~ 60 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 578999999997 36899999999999999999999999999999999999999999983
No 454
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=6.8e-13 Score=143.12 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=93.3
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEE-EccCCCCCcccHH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGI-IPQDPTLFNGTVR 1078 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~i-VpQdP~LF~gTIr 1078 (1232)
..+.+|+++++++|+.++|.||||+||||+++.+.++. +..++|. ||-+. .+-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46899999999999999999999999999999998774 2333432 22211 111333
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHH
Q 000904 1079 YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATD 1158 (1232)
Q Consensus 1079 ~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~T~ 1158 (1232)
+||- ... +.+..+.++.+.+|.|+||+ ..+-+++.+|++++||||++++|+...
T Consensus 73 d~I~--------------~~~-----------~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLL--------------SRL-----------SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hhee--------------Eec-----------CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 3331 111 11112233446899999976 455557889999999999999998654
Q ss_pred HHH-HHHHHHh-cCCcEEEEEecChhhhhh
Q 000904 1159 MIL-QKTIRAE-FADCTVITVAHRIPTVMD 1186 (1232)
Q Consensus 1159 ~~I-q~~L~~~-~~~~TVI~IAHrl~ti~~ 1186 (1232)
..+ ...++.. ..++|+|++||+.+.+..
T Consensus 127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 127 FAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 333 2333321 138899999999988765
No 455
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.41 E-value=3.9e-13 Score=146.58 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=100.1
Q ss_pred CccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCcc-cHH
Q 000904 1000 PLVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNG-TVR 1078 (1232)
Q Consensus 1000 ~~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~g-TIr 1078 (1232)
+.|.++++++.++ +.++|+|+|||||||+++++.++.-.. . .|.. ++-+ +.++++++|- |.. +++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~---vp~~--~~~i~~~~~i---~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSF---VPAS--KAEIGVVDRI---FTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCe---eccc--cceecceeeE---eccCCch
Confidence 3588899999877 999999999999999999997644221 0 1111 1111 2345555442 210 111
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHH----HHHHHHH--ccCCCEEEEecc---
Q 000904 1079 YNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQL----FCLGRAL--LRRSRILVLDEA--- 1149 (1232)
Q Consensus 1079 ~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQr----l~LARAL--L~~~kILILDEa--- 1149 (1232)
.++|.||.+. ..+++++ +.+|++++||||
T Consensus 84 ------------------------------------------~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~g 121 (216)
T cd03284 84 ------------------------------------------DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRG 121 (216)
T ss_pred ------------------------------------------hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 2345554443 3466665 469999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEEEEecChhHH
Q 000904 1150 TASIDNATD-MILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKL 1207 (1232)
Q Consensus 1150 Ts~LD~~T~-~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~L 1207 (1232)
|+++|.... ..+.+.+.+. .++|+|++||+.+...-+|++--+++|++...++++++
T Consensus 122 t~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 122 TSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999997652 4445555442 37899999999877666887777788888777666665
No 456
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.39 E-value=1.2e-12 Score=147.03 Aligned_cols=195 Identities=23% Similarity=0.297 Sum_probs=140.1
Q ss_pred eEecCCCCccceeeeEEEeCCc-----EEEEECCCCCChHHHHHHHhccccCCccEEEECCeeCCCCChHhhhccEEEEc
Q 000904 993 IRYRPDSPLVLKGISCTFEGGH-----KIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIP 1067 (1232)
Q Consensus 993 ~~Y~~~~~~vL~~vsl~I~~Ge-----kvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iVp 1067 (1232)
++|+ +...-+-+..+.|+.|| .+-..|.||-||||+++.|+|..+|++|. ++..+ .++|=|
T Consensus 343 y~Yp-~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp 408 (592)
T KOG0063|consen 343 YSYP-KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP 408 (592)
T ss_pred eccC-cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence 4453 34456778888899884 67888999999999999999999998762 22222 577888
Q ss_pred cCCC-CCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000904 1068 QDPT-LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVL 1146 (1232)
Q Consensus 1068 QdP~-LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILIL 1146 (1232)
|.-. =|+||||.-+. +.||.+-..-++...+. .|-..+..++..-.+|||||.||++||-+|=+.+++.+.
T Consensus 409 qkispK~~~tvR~ll~-------~kIr~ay~~pqF~~dvm-kpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYli 480 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLH-------TKIRDAYMHPQFVNDVM-KPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLI 480 (592)
T ss_pred cccCccccchHHHHHH-------HHhHhhhcCHHHHHhhh-hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEe
Confidence 8543 68899996542 34444433333322222 233444455555678999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHh--cCCcEEEEEecChhhhhh-cCeEEEEeC--CEEEEecChhHHHh
Q 000904 1147 DEATASIDNATDMILQKTIRAE--FADCTVITVAHRIPTVMD-CTMVLAISD--GKLAEYDEPMKLMK 1209 (1232)
Q Consensus 1147 DEaTs~LD~~T~~~Iq~~L~~~--~~~~TVI~IAHrl~ti~~-~DrVlVL~~--G~vvE~g~p~~Ll~ 1209 (1232)
|||.+-||.+.....-+.+++- ...+|-.+|-||.-...- +|||+|.+. +...-.-.|+.|+.
T Consensus 481 DEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 481 DEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 9999999999887777777763 257899999999654433 899999874 23333445666664
No 457
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=3.3e-13 Score=146.98 Aligned_cols=179 Identities=23% Similarity=0.243 Sum_probs=106.0
Q ss_pred ceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccccc----------cccc
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNS----------WLAA 695 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~----------~l~~ 695 (1232)
..|+++|++|+|+.+ ++|+||||+|++|++++|+||||||||||+++|+|.++|.+|+|.-.. .+++
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 479999999999742 699999999999999999999999999999999999999999984211 1222
Q ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHh
Q 000904 696 NVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIV 775 (1232)
Q Consensus 696 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~v 775 (1232)
..+...++..+-+.++=.+..+ +..-.-.+....+.+ ++...+.+-+..|.-|...+.|++
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g-------~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~L----------- 140 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLG-------RYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIGEL----------- 140 (254)
T ss_pred cCcccccCCCCCcCHHHHHHcc-------CcccccccccccHHH-HHHHHHHHHHcCchhhhCCccccc-----------
Confidence 2221112111111111000000 000000000001111 333444444444444433333221
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000904 776 DLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTT 839 (1232)
Q Consensus 776 d~~~~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~ 839 (1232)
++.-..-..++-++...|.+++++.|+.-++...+..+.+..+++++. +.+
T Consensus 141 ------------SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~t 191 (254)
T COG1121 141 ------------SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKT 191 (254)
T ss_pred ------------CcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCE
Confidence 111111123444556678888999999999999998888888888776 443
No 458
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=1.9e-12 Score=175.43 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=109.3
Q ss_pred CCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHH------HHHHHHHHccCCCEEE
Q 000904 1072 LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQ------LFCLGRALLRRSRILV 1145 (1232)
Q Consensus 1072 LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQ------rl~LARALL~~~kILI 1145 (1232)
.|+||+++||..-.+.+++ +++++.++..+++..+|.| |+.++..| .||+|||| |++||||++.+|+||+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4899999999873344554 7899999999999999999 99998776 89999999 9999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc------CCcEEEEEecChhhhhh------cCeEEEEeC---C-EEEEecChhHHHh
Q 000904 1146 LDEATASIDNATDMILQKTIRAEF------ADCTVITVAHRIPTVMD------CTMVLAISD---G-KLAEYDEPMKLMK 1209 (1232)
Q Consensus 1146 LDEaTs~LD~~T~~~Iq~~L~~~~------~~~TVI~IAHrl~ti~~------~DrVlVL~~---G-~vvE~g~p~~Ll~ 1209 (1232)
|||||++||..+...+.+.|.+.. .+.|||+|||+++++.. +|+.+-+.. | -+++.-+|+.++.
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1308 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPSSLGK 1308 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCccccc
Confidence 999999999999998888886642 36799999999998864 466665532 2 2445456666554
No 459
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.37 E-value=4.5e-12 Score=139.13 Aligned_cols=171 Identities=20% Similarity=0.232 Sum_probs=102.4
Q ss_pred eeeEEEeCCcEEEEECCCCCChHHHHHHH-hcccc-CC-ccEEEECCeeCCC--CChHhhhccEEEEccCCCCC----cc
Q 000904 1005 GISCTFEGGHKIGIVGRTGSGKTTLIGAL-FRLVE-PA-GGKILVDGIDISK--LGLHDLRSRFGIIPQDPTLF----NG 1075 (1232)
Q Consensus 1005 ~vsl~I~~GekvgIVGrtGSGKSTLl~~L-~rl~e-p~-~G~I~IDG~dI~~--i~l~~LR~~i~iVpQdP~LF----~g 1075 (1232)
..++.+.+ ....|+|+|||||||++-+| +-+-. +. +.+..-...-|.. -........+....+++.-. ..
T Consensus 17 ~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~~ 95 (220)
T PF02463_consen 17 NAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDKK 95 (220)
T ss_dssp EEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSSS
T ss_pred eEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44455544 48999999999999999999 54442 11 1110000000000 01112233455554444211 11
Q ss_pred --cHHhccCCCC---------CCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHH----ccC
Q 000904 1076 --TVRYNLDPLS---------QHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRAL----LRR 1140 (1232)
Q Consensus 1076 --TIr~NLdp~~---------~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARAL----L~~ 1140 (1232)
.|+..++..+ ..+.+++.+.++...+... .+|||||-+++||=.+ ..+
T Consensus 96 ~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~~~~~~ 158 (220)
T PF02463_consen 96 EIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLALQRYKP 158 (220)
T ss_dssp EEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHHHTCS-
T ss_pred cccccccccccccccccccccccccccccccccccccccc-----------------ccccccccccccccccccccccc
Confidence 1221222111 2345667666665544321 7999999999998554 357
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEE
Q 000904 1141 SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAI 1193 (1232)
Q Consensus 1141 ~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL 1193 (1232)
++++||||+.++||......+.+.|++..+++-+|++||+..+...+|+.+.+
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999988788999999999999999987765
No 460
>PRK00064 recF recombination protein F; Reviewed
Probab=99.37 E-value=8.5e-12 Score=146.59 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=65.8
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhh---cC
Q 000904 1121 SNWSMGQRQLFCLGRALL---------RRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMD---CT 1188 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL---------~~~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~---~D 1188 (1232)
..+|.||+|+++||+++. ++|+||+||||+++||+...+.+.+.|.+. ++++++.+|+.+.+.+ .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 468999999999999885 799999999999999999999998888642 5688999998876654 45
Q ss_pred eEEEEeCCEE
Q 000904 1189 MVLAISDGKL 1198 (1232)
Q Consensus 1189 rVlVL~~G~v 1198 (1232)
+++.|++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 461
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=6.9e-12 Score=132.52 Aligned_cols=63 Identities=38% Similarity=0.596 Sum_probs=58.0
Q ss_pred ceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccccc
Q 000904 626 HVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQN 690 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~ 690 (1232)
..|+++|++.+||. .+.+|+||||+|++||+|+|+|+|||||||||++|.|..++.+|++..+
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~ 64 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFN 64 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEec
Confidence 46999999999984 4689999999999999999999999999999999999999999988543
No 462
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=2.2e-12 Score=138.73 Aligned_cols=59 Identities=39% Similarity=0.533 Sum_probs=55.6
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+++++++.+|+. ..+|+||||+|++||+|+|+|||||||||||++|.|...|++|+|.
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~ 61 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 5899999999975 5899999999999999999999999999999999999999999873
No 463
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.28 E-value=3.1e-12 Score=146.19 Aligned_cols=206 Identities=24% Similarity=0.290 Sum_probs=123.0
Q ss_pred cceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccccccccccccc--CCCc
Q 000904 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVE--NPNV 702 (1232)
Q Consensus 625 ~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~~l~~~~~--~~~~ 702 (1232)
...++++|++.+|+ +.++++|+||+|++||++++.|||||||||+|++|.|+..|++|+|.-+.--....+ ..++
T Consensus 3 ~~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred CceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccc
Confidence 35799999999997 358999999999999999999999999999999999999999998843321100000 0010
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhh-hhh
Q 000904 703 STLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLD-VPF 781 (1232)
Q Consensus 703 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~-~~~ 781 (1232)
...+ --|+ +|=-+.....+.+|++..+ ..+..++-.|+..-++.+... ...
T Consensus 80 g~VF--Q~YA-------LFPHltV~~NVafGLk~~~-------------------~~~~~~i~~rv~e~L~lV~L~~~~~ 131 (352)
T COG3842 80 GMVF--QSYA-------LFPHMTVEENVAFGLKVRK-------------------KLKKAEIKARVEEALELVGLEGFAD 131 (352)
T ss_pred ceee--cCcc-------cCCCCcHHHHhhhhhhhcC-------------------CCCHHHHHHHHHHHHHHcCchhhhh
Confidence 0000 0000 0000111111223333110 111223334444433333321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhhcc
Q 000904 782 SLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 861 (1232)
Q Consensus 782 ~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIraf~ 861 (1232)
....-+++.-+.-..++-.....|.+++++.|+..++..+........+++.+..+.+--.+.+.-.|++.-...|-.++
T Consensus 132 R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~ 211 (352)
T COG3842 132 RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMN 211 (352)
T ss_pred hChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEcc
Confidence 11111233334445566667788999999999999999998888777777777766665556666666665554444443
No 464
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.28 E-value=3.8e-12 Score=132.87 Aligned_cols=60 Identities=42% Similarity=0.558 Sum_probs=56.0
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQ 689 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~ 689 (1232)
.|+++|++.+|+. ..+|+|||++|++||.++|||||||||||||++|+|+.++++|.|.-
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i 61 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEE
Confidence 5899999999973 57999999999999999999999999999999999999999998843
No 465
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.28 E-value=2.4e-12 Score=136.77 Aligned_cols=203 Identities=20% Similarity=0.263 Sum_probs=119.2
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccccccccccccccCCCcchhH
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPNVSTLR 706 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~~l~~~~~~~~~~~~~ 706 (1232)
+|+++|+|+.|. ++.+++|+||+|++||+++++|||||||||+|+.|++.++|++|+|.-+.- .....+.-...
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~---~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE---DISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCe---ecccCCHHHHH
Confidence 489999999997 468999999999999999999999999999999999999999999853320 00001111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhh-------h
Q 000904 707 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLD-------V 779 (1232)
Q Consensus 707 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~-------~ 779 (1232)
.-+.|++=+.+- | .|....+.+.--|- ....+..++-.|...-+..++++ .
T Consensus 75 r~IGYviQqigL--F------------------Ph~Tv~eNIa~VP~--L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry 132 (309)
T COG1125 75 RKIGYVIQQIGL--F------------------PHLTVAENIATVPK--LLGWDKERIKKRADELLDLVGLDPSEYADRY 132 (309)
T ss_pred Hhhhhhhhhccc--C------------------CCccHHHHHHhhhh--hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC
Confidence 223333211110 0 00001111111110 11122223333333222222221 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhh
Q 000904 780 PFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRA 859 (1232)
Q Consensus 780 ~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIra 859 (1232)
|.. +++.-+.-..++-.....|.+++.+.|+..++...+........++++.-+.+--.+.+...|++.-...|-.
T Consensus 133 P~e----LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v 208 (309)
T COG1125 133 PHE----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV 208 (309)
T ss_pred chh----cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence 111 1122222233444556788899999999999988877777777777777777766677777887765444444
Q ss_pred cc
Q 000904 860 FE 861 (1232)
Q Consensus 860 f~ 861 (1232)
++
T Consensus 209 m~ 210 (309)
T COG1125 209 MD 210 (309)
T ss_pred ec
Confidence 43
No 466
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.26 E-value=5.9e-12 Score=143.19 Aligned_cols=199 Identities=21% Similarity=0.304 Sum_probs=118.3
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccccccccccccc--CCCcch
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVE--NPNVST 704 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~~~~~l~~~~~--~~~~~~ 704 (1232)
.|+++|++.+|+.. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.-+.-.....+ ..+..-
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 68999999999742 2999999999999999999999999999999999999999999843321110000 000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCHHHHHHHHHhhHHHhhhh-----h
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLD-----V 779 (1232)
Q Consensus 705 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~vd~~-----~ 779 (1232)
.+. -|. ++=-...+....++++..+ .+..++-.|+..-...++.. .
T Consensus 80 VFQ--~yA-------LyPhmtV~~Niaf~Lk~~~--------------------~~k~ei~~rV~eva~~L~l~~lL~r~ 130 (338)
T COG3839 80 VFQ--NYA-------LYPHMTVYENIAFGLKLRG--------------------VPKAEIDKRVKEVAKLLGLEHLLNRK 130 (338)
T ss_pred EeC--Ccc-------ccCCCcHHHHhhhhhhhCC--------------------CchHHHHHHHHHHHHHcCChhHHhcC
Confidence 000 000 0000011112233444321 12223333332222222110 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhHHHhh
Q 000904 780 PFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRA 859 (1232)
Q Consensus 780 ~~~l~~~~~~~~~~l~~l~v~~~~~~~~~l~~~p~~~l~~~~~~~~~~~~r~l~rl~~~~~s~l~~~~~E~l~g~~tIra 859 (1232)
|.. +++.-..-..++-..+..|.+++++.|+..++..+........+++.+.-+.+.-.+.+...|++.-...|-.
T Consensus 131 P~~----LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~V 206 (338)
T COG3839 131 PLQ----LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV 206 (338)
T ss_pred ccc----CChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEE
Confidence 111 1122222334555566778889999999999998888877777777777677766777777777765555444
Q ss_pred cc
Q 000904 860 FE 861 (1232)
Q Consensus 860 f~ 861 (1232)
.+
T Consensus 207 m~ 208 (338)
T COG3839 207 MN 208 (338)
T ss_pred Ee
Confidence 43
No 467
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.26 E-value=5.6e-12 Score=157.99 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=87.1
Q ss_pred HHHHHHHHcCCcHHHHhhccCCcccccCCC------CCCChhHHHHHHHHHHHc----------cCCCEEEEeccC-CCC
Q 000904 1091 EIWEVLAKCHLGEAVREKENGLDSLVVEDG------SNWSMGQRQLFCLGRALL----------RRSRILVLDEAT-ASI 1153 (1232)
Q Consensus 1091 eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G------~nLSgGQRQrl~LARALL----------~~~kILILDEaT-s~L 1153 (1232)
.+.+.|+..+. ++...+|+++++.+++.| .+||||||||++||||++ .+|++|+||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34555555442 333345777888887777 689999999999999887 589999999998 789
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeC-CEE
Q 000904 1154 DNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISD-GKL 1198 (1232)
Q Consensus 1154 D~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~-G~v 1198 (1232)
|..+...+.+.|++. ++.|||+|||+.+....+|++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999987 78899999999888888999999986 543
No 468
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=4.6e-11 Score=130.05 Aligned_cols=133 Identities=19% Similarity=0.169 Sum_probs=90.3
Q ss_pred cceeeeEEEeCC--cEEEEECCCCCChHHHHHHHhccc-cCCccEEEECCeeCCCCChHhhhccEEEEccCCCCCc--cc
Q 000904 1002 VLKGISCTFEGG--HKIGIVGRTGSGKTTLIGALFRLV-EPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFN--GT 1076 (1232)
Q Consensus 1002 vL~~vsl~I~~G--ekvgIVGrtGSGKSTLl~~L~rl~-ep~~G~I~IDG~dI~~i~l~~LR~~i~iVpQdP~LF~--gT 1076 (1232)
|=+|+++ .++ .+++|+|+||+||||+++.+.... -+..|...... ..++++.+|...-+. .|
T Consensus 18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 4444444 444 789999999999999999998422 15566655432 246788888753221 11
Q ss_pred HHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHH
Q 000904 1077 VRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNA 1156 (1232)
Q Consensus 1077 Ir~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LARALL~~~kILILDEaTs~LD~~ 1156 (1232)
+.+++ ..+ .-+-||+++|++++.+|++++||||++++|+.
T Consensus 85 i~~~~--------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 85 VSSGQ--------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhhcc--------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 11111 111 34568999999999999999999999999986
Q ss_pred H-HHHHHHHHHHhc-C---CcEEEEEecChhhhhhc
Q 000904 1157 T-DMILQKTIRAEF-A---DCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1157 T-~~~Iq~~L~~~~-~---~~TVI~IAHrl~ti~~~ 1187 (1232)
. .......+++.. . ..++|++||+.+.+...
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 4 444455555432 2 24899999999988764
No 469
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.23 E-value=2.4e-11 Score=129.50 Aligned_cols=63 Identities=33% Similarity=0.555 Sum_probs=56.5
Q ss_pred ceEEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 626 HVISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..++++|+++.|+... -.++|+||||+|.+||..+|+|+||||||||+++|+|..+|.+|+|.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~ 65 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL 65 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Confidence 4689999999997532 12599999999999999999999999999999999999999999984
No 470
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.22 E-value=1.4e-11 Score=131.41 Aligned_cols=68 Identities=9% Similarity=0.089 Sum_probs=49.9
Q ss_pred CCCCCChhHHHHHHHHHHHcc--CCCEEEEeccCCCCCHHHHHHH-HHHHHHhc--CCcEEEEEecChhhhhhcCe
Q 000904 1119 DGSNWSMGQRQLFCLGRALLR--RSRILVLDEATASIDNATDMIL-QKTIRAEF--ADCTVITVAHRIPTVMDCTM 1189 (1232)
Q Consensus 1119 ~G~nLSgGQRQrl~LARALL~--~~kILILDEaTs~LD~~T~~~I-q~~L~~~~--~~~TVI~IAHrl~ti~~~Dr 1189 (1232)
+.+.||+|++| +++++.. +|+++++||||+++|+.....+ +..++... .++++|++||+.+....+|+
T Consensus 58 ~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 58 GLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 34578888877 4555554 9999999999999999865554 45555432 37899999999986655663
No 471
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.15 E-value=3.7e-10 Score=134.27 Aligned_cols=175 Identities=21% Similarity=0.317 Sum_probs=118.2
Q ss_pred ccceeeeEEEeCCcEEEEECCCCCChHHHHHHHhccccCCccEEEECC---eeCCC-----CChHhhhccEEEEcc--CC
Q 000904 1001 LVLKGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDG---IDISK-----LGLHDLRSRFGIIPQ--DP 1070 (1232)
Q Consensus 1001 ~vL~~vsl~I~~GekvgIVGrtGSGKSTLl~~L~rl~ep~~G~I~IDG---~dI~~-----i~l~~LR~~i~iVpQ--dP 1070 (1232)
.+++++ +++.+|++++|+|+||+|||||+++|.|+.+|+.|.|.+.| .++.+ ++...+++.+.++.+ +|
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~ 225 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP 225 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC
Confidence 589999 99999999999999999999999999999999999999954 44443 455567788888865 33
Q ss_pred CCCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCccccc-CCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000904 1071 TLFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVV-EDGSNWSMGQRQLFCLGRALLRRSRILVLDEA 1149 (1232)
Q Consensus 1071 ~LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~-e~G~nLSgGQRQrl~LARALL~~~kILILDEa 1149 (1232)
.+ +++..+.-.+-+.|+..+ .|.|-.+- ++-.++-.-||. +++ .+.+|+ .
T Consensus 226 ~~-----------------~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rE-isl---~~ge~P------~ 276 (438)
T PRK07721 226 AL-----------------MRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQRE-IGL---AVGEPP------T 276 (438)
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHH-HHH---hcCCCC------c
Confidence 21 122222222222344433 25554332 221222111111 111 122333 5
Q ss_pred CCCCCHHHHHHHHHHHHHhc---CCc-----EEEEEecChhhhhhcCeEEEEeCCEEEEecChhH
Q 000904 1150 TASIDNATDMILQKTIRAEF---ADC-----TVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMK 1206 (1232)
Q Consensus 1150 Ts~LD~~T~~~Iq~~L~~~~---~~~-----TVI~IAHrl~ti~~~DrVlVL~~G~vvE~g~p~~ 1206 (1232)
|+++|+.....+.+.+++.- .|. ||++.+||++. .-||++.++.||+|+..++..+
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 89999999998888887754 353 99999999984 4599999999999998876533
No 472
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.15 E-value=4e-11 Score=127.17 Aligned_cols=61 Identities=36% Similarity=0.578 Sum_probs=57.2
Q ss_pred cceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 625 NHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 625 ~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
...|++++++++|. ++.+++||||+|++||.++|+|+|||||||||++|.|+++|++|+|.
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~ 66 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE
Confidence 46899999999996 36899999999999999999999999999999999999999999983
No 473
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.14 E-value=2.2e-11 Score=124.40 Aligned_cols=60 Identities=35% Similarity=0.582 Sum_probs=56.3
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+|+++|++..|+.+ +++|+||||+|++||++-++||||+||||||+.|.|+..|+.|.+.
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~ 60 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEE
Confidence 48999999999864 5799999999999999999999999999999999999999999873
No 474
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.13 E-value=6.7e-11 Score=150.31 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=96.6
Q ss_pred ceEEEEeeEeEecCCCCccce-----eeeEEEeCC-cEEEEECCCCCChHHHHHHHhcc-ccCCccEEEECCeeCCCCCh
Q 000904 984 GKVDICDLQIRYRPDSPLVLK-----GISCTFEGG-HKIGIVGRTGSGKTTLIGALFRL-VEPAGGKILVDGIDISKLGL 1056 (1232)
Q Consensus 984 G~I~~~nvs~~Y~~~~~~vL~-----~vsl~I~~G-ekvgIVGrtGSGKSTLl~~L~rl-~ep~~G~I~IDG~dI~~i~l 1056 (1232)
|.+.++++.. |+++ .+|+++.+| ++++|+||||+||||+++++.+. +-+..|.
T Consensus 294 ~~i~l~~~rh-------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------- 353 (771)
T TIGR01069 294 GKIILENARH-------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------- 353 (771)
T ss_pred CCEEEccccC-------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-------------
Confidence 4577766543 2333 378888887 89999999999999999999887 3333331
Q ss_pred HhhhccEEEEccCCC-CCcccHHhccCCCCCCCHHHHHHHHHHcCCcHHHHhhccCCcccccCCCCCCChhHHHHHHHHH
Q 000904 1057 HDLRSRFGIIPQDPT-LFNGTVRYNLDPLSQHTDQEIWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGR 1135 (1232)
Q Consensus 1057 ~~LR~~i~iVpQdP~-LF~gTIr~NLdp~~~~sd~eI~~aL~~~~L~~~i~~~p~gLdt~v~e~G~nLSgGQRQrl~LAR 1135 (1232)
+||.++. .+ .+.+++ +....+++ .+.++-+.||+|++|+..+++
T Consensus 354 --------~Vpa~~~~~~--~~~d~i--~~~i~~~~-----------------------si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 354 --------PIPANEHSEI--PYFEEI--FADIGDEQ-----------------------SIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred --------CccCCccccc--cchhhe--eeecChHh-----------------------HHhhhhhHHHHHHHHHHHHHH
Confidence 4444431 00 001111 00011110 111233579999999999998
Q ss_pred HHccCCCEEEEeccCCCCCHHHHHHHH-HHHHHh-cCCcEEEEEecChhhh
Q 000904 1136 ALLRRSRILVLDEATASIDNATDMILQ-KTIRAE-FADCTVITVAHRIPTV 1184 (1232)
Q Consensus 1136 ALL~~~kILILDEaTs~LD~~T~~~Iq-~~L~~~-~~~~TVI~IAHrl~ti 1184 (1232)
++ .+|++++||||++++|+..-..+. ..++.. ..++++|++||..+..
T Consensus 399 ~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 399 KT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 87 789999999999999998887774 444432 2589999999998753
No 475
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.12 E-value=7.1e-11 Score=123.34 Aligned_cols=58 Identities=31% Similarity=0.498 Sum_probs=53.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+. +++|+|+||++++||.++|+|+||||||||+++|.|+++|.+|++.
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 58 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 478999999963 4799999999999999999999999999999999999999999874
No 476
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.12 E-value=6.9e-11 Score=131.53 Aligned_cols=55 Identities=35% Similarity=0.605 Sum_probs=49.7
Q ss_pred EEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCC
Q 000904 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH 682 (1232)
Q Consensus 628 I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~ 682 (1232)
++++|++.+|.... ...+++||||+|++||.+||||+|||||||+.++|+|++|+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~ 57 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK 57 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 68999999997543 35799999999999999999999999999999999999984
No 477
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=8.6e-11 Score=130.22 Aligned_cols=63 Identities=30% Similarity=0.476 Sum_probs=56.8
Q ss_pred ceEEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 626 HVISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 626 ~~I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..++++|++++|+.+. .+++|+|+||+|++||.++|+|+||||||||+++|.|.++|++|++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 67 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI 67 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 4699999999997432 24799999999999999999999999999999999999999999874
No 478
>PRK13695 putative NTPase; Provisional
Probab=99.11 E-value=7.2e-11 Score=124.72 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=65.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEec--cCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCCEE
Q 000904 1121 SNWSMGQRQLFCLGRALLRRSRILVLDE--ATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKL 1198 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~~kILILDE--aTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G~v 1198 (1232)
..+|++++-+..+++..+++|+++++|| |+.++|....+.+.+.++ .+.++|.++|+-..-..+|+|..+.+|+|
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 3589999999999999999999999999 555667666666666663 47899999999655566999999999999
Q ss_pred EEec
Q 000904 1199 AEYD 1202 (1232)
Q Consensus 1199 vE~g 1202 (1232)
.+..
T Consensus 154 ~~~~ 157 (174)
T PRK13695 154 YELT 157 (174)
T ss_pred EEEc
Confidence 9873
No 479
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.11 E-value=1.3e-10 Score=144.51 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCChhHHHHHHHHHHHccC----CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEEecChhhhhhcCeEEEEeCC
Q 000904 1121 SNWSMGQRQLFCLGRALLRR----SRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDG 1196 (1232)
Q Consensus 1121 ~nLSgGQRQrl~LARALL~~----~kILILDEaTs~LD~~T~~~Iq~~L~~~~~~~TVI~IAHrl~ti~~~DrVlVL~~G 1196 (1232)
..+||||+||++|||+++.. |++|||||||+++|..+...+.+.|++..++.|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 36899999999999999875 69999999999999999999999999876789999999999999889999999886
Q ss_pred E
Q 000904 1197 K 1197 (1232)
Q Consensus 1197 ~ 1197 (1232)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 4
No 480
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.4e-10 Score=134.22 Aligned_cols=65 Identities=28% Similarity=0.380 Sum_probs=58.3
Q ss_pred CcceEEEEeeEEEecCCC--CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 624 VNHVISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~--~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+..|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+|+|.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~ 84 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ 84 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 446899999999997432 24799999999999999999999999999999999999999999884
No 481
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.10 E-value=1.2e-10 Score=128.44 Aligned_cols=65 Identities=23% Similarity=0.504 Sum_probs=58.7
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
..+.++++|++++|+.+..+++|+|+||+|++||+++|+|+||||||||+++|.|+.+|.+|++.
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 72 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL 72 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 45689999999999753334799999999999999999999999999999999999999999874
No 482
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.10 E-value=9e-11 Score=128.65 Aligned_cols=61 Identities=34% Similarity=0.483 Sum_probs=54.5
Q ss_pred EEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 62 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE
Confidence 46899999996421 14799999999999999999999999999999999999999999874
No 483
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.10 E-value=1e-10 Score=127.96 Aligned_cols=61 Identities=31% Similarity=0.544 Sum_probs=55.2
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+++++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+|++.
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 61 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 37899999999632 24799999999999999999999999999999999999999999874
No 484
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.10 E-value=9.9e-11 Score=122.64 Aligned_cols=59 Identities=31% Similarity=0.606 Sum_probs=54.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+|.+|++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 4789999999632 4799999999999999999999999999999999999999999874
No 485
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.09 E-value=1.4e-10 Score=123.07 Aligned_cols=60 Identities=43% Similarity=0.746 Sum_probs=54.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+.. ++++|+|+||+|++||+++|+|+||||||||+++|.|+.+|.+|++.
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 4789999999643 24799999999999999999999999999999999999999999873
No 486
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.09 E-value=1.1e-10 Score=125.51 Aligned_cols=61 Identities=36% Similarity=0.519 Sum_probs=54.7
Q ss_pred EEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|++..|.... ..++|+|+||+|++||+|+|+|||||||||||+.|-|...|++|.+.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~ 63 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL 63 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 67899999997432 24789999999999999999999999999999999999999999863
No 487
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.08 E-value=1.2e-10 Score=129.36 Aligned_cols=61 Identities=34% Similarity=0.599 Sum_probs=55.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|+++.|+...++++|+|+||++++||.++|+|+||||||||+++|+|+++|.+|++.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 61 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 4789999999754345799999999999999999999999999999999999999999874
No 488
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.08 E-value=1.3e-10 Score=127.41 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=54.8
Q ss_pred EEEEeeEEEecCCCC-CCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~-~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+.... .++|+|+||++++||.++|+|+||||||||+++|.|+++|.+|++.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 63 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE
Confidence 789999999974211 2799999999999999999999999999999999999999999873
No 489
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.08 E-value=3.9e-10 Score=120.44 Aligned_cols=61 Identities=34% Similarity=0.591 Sum_probs=56.7
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v 687 (1232)
.+..|+++|+++.|.. +++|+|||++|++||..+|+|+|||||||||+.+.|+.||.+|.+
T Consensus 28 ~~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~ 88 (257)
T COG1119 28 NEPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88 (257)
T ss_pred CcceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce
Confidence 4467999999999963 689999999999999999999999999999999999999998876
No 490
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.08 E-value=1.2e-10 Score=127.98 Aligned_cols=60 Identities=30% Similarity=0.566 Sum_probs=54.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|+++.|+.. ++++|+|+||++++||.++|+|+||||||||+++|.|.++|++|++.
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4789999999642 25799999999999999999999999999999999999999999874
No 491
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.08 E-value=1.3e-10 Score=126.94 Aligned_cols=60 Identities=25% Similarity=0.522 Sum_probs=54.8
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
+++++|++++|+. ++++|+|+||+|++||.++|+|+||||||||+++|+|+.+|.+|++.
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (214)
T TIGR02673 1 MIEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 (214)
T ss_pred CEEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 3789999999952 25799999999999999999999999999999999999999999874
No 492
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=1.3e-10 Score=123.26 Aligned_cols=58 Identities=38% Similarity=0.606 Sum_probs=53.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+. +++++|+||++++||.++|+|+||||||||+++|.|++++++|++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 478999999963 4799999999999999999999999999999999999999999874
No 493
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=1.5e-10 Score=131.67 Aligned_cols=62 Identities=34% Similarity=0.583 Sum_probs=56.5
Q ss_pred eEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 627 VISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.++++|++++|+....+++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|++.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 68999999999743334699999999999999999999999999999999999999999874
No 494
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.08 E-value=1.4e-10 Score=127.71 Aligned_cols=62 Identities=29% Similarity=0.480 Sum_probs=56.8
Q ss_pred CcceEEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 624 VNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 624 ~~~~I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
.+..|+++|++++|+. +++++|+||+|++||+++|+|+||||||||+++|.|+.+|++|++.
T Consensus 4 ~~~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 65 (225)
T PRK10247 4 NSPLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL 65 (225)
T ss_pred CCceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 3457999999999963 5799999999999999999999999999999999999999999874
No 495
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=1.4e-10 Score=125.59 Aligned_cols=62 Identities=34% Similarity=0.511 Sum_probs=56.3
Q ss_pred eEEEEeeEEEecCC-CCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCC---Ccccccc
Q 000904 627 VISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIL 688 (1232)
Q Consensus 627 ~I~i~~~sfsw~~~-~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~---~~~G~v~ 688 (1232)
.+.++|++|.|+.. +++++|+|+||+|++||+++|+|+||||||||+++|.|.++ |.+|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~ 68 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH 68 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE
Confidence 47899999999864 35689999999999999999999999999999999999999 7899873
No 496
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.07 E-value=2e-10 Score=125.58 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHccCCCEEEEeccC-----CCCCHHHHHHHHHHHHHh
Q 000904 1127 QRQLFCLGRALLRRSRILVLDEAT-----ASIDNATDMILQKTIRAE 1168 (1232)
Q Consensus 1127 QRQrl~LARALL~~~kILILDEaT-----s~LD~~T~~~Iq~~L~~~ 1168 (1232)
|+|+..|||+++.+|+++++|||| ++||+.+.+.+.+.+++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999874
No 497
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=1.3e-10 Score=129.09 Aligned_cols=58 Identities=36% Similarity=0.625 Sum_probs=53.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|.++|.+|++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~ 58 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 478999999963 4799999999999999999999999999999999999999999874
No 498
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=1.2e-10 Score=127.31 Aligned_cols=58 Identities=34% Similarity=0.546 Sum_probs=53.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|++++|+. +++|+|+||+|++||.++|+|+||||||||+++|.|.++|.+|++.
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 58 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 478999999963 5799999999999999999999999999999999999999999874
No 499
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.07 E-value=1.6e-10 Score=126.90 Aligned_cols=61 Identities=33% Similarity=0.497 Sum_probs=55.0
Q ss_pred EEEEeeEEEecCCC-CCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~-~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|.+|++.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 63 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL 63 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 78999999996422 24799999999999999999999999999999999999999999873
No 500
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.07 E-value=1.9e-10 Score=121.41 Aligned_cols=60 Identities=38% Similarity=0.694 Sum_probs=54.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeEEEecCCCeEEEEeccccchHHHHHHHHhcCCCcccccc
Q 000904 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIL 688 (1232)
Q Consensus 628 I~i~~~sfsw~~~~~~~~L~~inl~i~~Ge~vaIvG~~GSGKSTLL~~ilGe~~~~~G~v~ 688 (1232)
|+++|++++|+.. ++++++|+||++++||+++|+|++|||||||+++|.|+++|.+|++.
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 4789999999742 34799999999999999999999999999999999999999999874
Done!