Query 000904
Match_columns 1232
No_of_seqs 445 out of 4247
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:23:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000904.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_671-674//hhsearch_pdb/000904hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1182.9 94.6 962 252-1223 1-1317(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 929.5 89.7 908 306-1224 44-1272(1284)
3 4f4c_A Multidrug resistance pr 1.0 1 1 705.0 63.1 516 705-1223 136-654 (1321)
4 3g5u_A MCG1178, multidrug resi 1.0 1 1 668.9 50.0 515 705-1222 108-625 (1284)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 642.2 54.4 557 305-1224 32-592 (598)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 641.6 56.7 562 299-1223 12-579 (587)
7 4a82_A Cystic fibrosis transme 1.0 1 1 624.7 55.5 560 302-1221 6-575 (578)
8 3b60_A Lipid A export ATP-bind 1.0 1 1 621.6 62.8 506 711-1222 71-579 (582)
9 3b5x_A Lipid A export ATP-bind 1.0 1 1 619.6 65.7 504 713-1222 73-579 (582)
10 2yl4_A ATP-binding cassette SU 1.0 1 1 617.0 62.7 512 711-1225 68-586 (595)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1182.95 Aligned_cols=962 Identities=18% Similarity=0.215 Sum_probs=746.6
Q ss_pred HHHHH-CCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCC------------CCCCCHHHHHHHHH----HHHHHHH
Q ss_conf 99820-2498888999899902008999999999998833109------------99982289999999----8898999
Q 000904 252 LMKRG-REKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAE------------PSSQPSVLRTIIIC----YWRDIFM 314 (1232)
Q Consensus 252 l~~~g-~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~------------~~~~~~l~~~l~~~----~~~~~~~ 314 (1232)
|++.| .|++|+.+|.+.+.|+|..+...+.+++.|.....+. ..++.+ ++.+++. .+.-+++
T Consensus 1 ~~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~Lfrya~~~d~~l~~~ 79 (1321)
T 4f4c_A 1 MLRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVS-IPQLYRYTTTLEKLLLFI 79 (1321)
T ss_dssp ---CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCC-HHHHTTTCCHHHHHHHHH
T ss_pred CCCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCC-HHHHHHCCCHHHHHHHHH
T ss_conf 9877310068763544567950111000011345424355433431001223202568779-999731567678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------C--------CC-----CCH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999989999999999871588-------7--------77-----504----899999999999999999999
Q 000904 315 SGFFALLKVLTLSAGPLLLNAFILVTEGK-------A--------GF-----KYE----GYVLAITLFVAKILESLSQRQ 370 (1232)
Q Consensus 315 ~~~~~l~~~~~~~~~P~ll~~~i~~~~~~-------~--------~~-----~~~----g~~la~~l~~~~~~~~~~~~~ 370 (1232)
+.+++++..+.....++++..+++.+.+. . .. ... .+.++...+...++..+....
T Consensus 80 g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 159 (1321)
T 4f4c_A 80 GTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTC 159 (1321)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999701000145430003443100168999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999971583222036884467789997899996798-998999999999999999999999
Q 000904 371 WYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAV 449 (1232)
Q Consensus 371 ~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~~~~w~~plqi~ial~~L~~~l 449 (1232)
|.+.++|+..++| ..+|+|.++++-.-.+++++|+++|.++.|++++.++. ..+..+|..+++++.++++++..
T Consensus 160 ~~~~~~r~~~~lR----~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~- 234 (1321)
T 4f4c_A 160 YLYVAEQMNNRLR----REFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTH- 234 (1321)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH----HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999999999----99999997889899879984899999999999999999999999999999999999999999-
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79-99999999999999889999999999999999999999999999956699998300699999999999999999999
Q 000904 450 GL-ATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSA 528 (1232)
Q Consensus 450 G~-~~l~gl~~~~i~~~~~~~~a~~~~~~q~~~m~~~D~R~~~~~E~L~~ik~IK~~awE~~f~~~I~~~R~~E~~~l~~ 528 (1232)
+| .+++.++++++.+++...+++.+.+++++.++..+++.+.++|.++|||+||+|+||+.+.+++.+..++..+...+
T Consensus 235 ~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 314 (1321)
T 4f4c_A 235 SWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVL 314 (1321)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999999999983999998214299999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999986766--99999999999870887670259789999999999999869999999999999999999717
Q 000904 529 VQLRKAYNTFLFWSSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLE 606 (1232)
Q Consensus 529 ~~~~~~~~~~~~~~~p--~lv~~~tF~~~~l~g~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~ 606 (1232)
.....+.........+ .++.++++|.+.+.++.++++.+|++++++..+..|+..++..+..+.++.+|++||.+||+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 394 (1321)
T 4f4c_A 315 KGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLD 394 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999999599869999999999999999999899999999999999999999971
Q ss_pred CCCCCCCHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 98788200002588778753089984389824899988401017786189838997035554688999887108776554
Q 000904 607 APELQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT 686 (1232)
Q Consensus 607 ~~e~~~~~~~~~~~~~~~~~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~ 686 (1232)
.++..++..+......+.++.|+++|++|+|+..++.|+|+|+||+|++|++++|||++|||||||+++|+|++++.+|+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~ 474 (1321)
T 4f4c_A 395 RKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474 (1321)
T ss_dssp TSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 78534566655656778887679998554079999874333318862288278998058985778888754565164486
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 3-------------------------------------------------------------------------------
Q 000904 687 I------------------------------------------------------------------------------- 687 (1232)
Q Consensus 687 v------------------------------------------------------------------------------- 687 (1232)
|
T Consensus 475 I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~ 554 (1321)
T 4f4c_A 475 ITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQ 554 (1321)
T ss_dssp EEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCC
T ss_pred CCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCEECCCCCC
T ss_conf 15799650112599985046665875332078616788641552209999999987565468870888886075589887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 555 LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~G 634 (1321)
T 4f4c_A 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVG 634 (1321)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCEEECCC
T ss_conf 77778799999998725999899845544688789999999999984798899973638789868989996399651368
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000904 688 -------------------------------------------------------------------------------- 687 (1232)
Q Consensus 688 -------------------------------------------------------------------------------- 687 (1232)
T Consensus 635 th~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1321)
T 4f4c_A 635 DHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEK 714 (1321)
T ss_dssp CHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 99999985327999999622122223323344332232111222223422222221102211101321245677402577
Q ss_pred --------------------------------CCCCCC-----------------------C-C---CCCCC---CCCHH
Q ss_conf --------------------------------221100-----------------------0-1---44688---86235
Q 000904 688 --------------------------------LQNSWL-----------------------A-A---NVENP---NVSTL 705 (1232)
Q Consensus 688 --------------------------------~~~~wl-----------------------~-~---~~~~~---~~~~~ 705 (1232)
...+|. . | ...++ .....
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1321)
T 4f4c_A 715 EERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGH 794 (1321)
T ss_dssp -CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHH
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 75315403899999999707863109999999877899999999999999999999999999999875179345566789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999999999999987196464488--8887999999964878652304679
Q 000904 706 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS--TPLGRVLSRVSSDLSIVDLDVPFSL 783 (1232)
Q Consensus 706 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~--~p~GrilnR~s~D~~~id~~~~~~l 783 (1232)
++..+|.+++++..++.+.+.+.....+.+.+.++|.+++++++++|++|||. +|+|+++||+++|++.+|..++..+
T Consensus 795 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l 874 (1321)
T 4f4c_A 795 FWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRF 874 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999988873499333216788848888502505999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99999999999999999999899999998799999999999999999999986121689999999998111788661308
Q 000904 784 IFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 863 (1232)
Q Consensus 784 ~~~~~~~~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~~~ 863 (1232)
..++...+.+++.++++....|.+.++.+++..+.......+.+..+...+......+....++.|++.|+.+||+|+.+
T Consensus 875 ~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e 954 (1321)
T 4f4c_A 875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARE 954 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99999865377770221378689999999988899999999999999999999999888988999999627988861414
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998971079157899999999999999999999999999---9866999766679999999999987999999
Q 000904 864 DRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC---MVLLPPGTFTPGFIGMALSYGLSLNSSLVMS 940 (1232)
Q Consensus 864 ~~f~~~~~~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~---~v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~ 940 (1232)
+++.+++.+..+...+..+.......+.......+.......+..+ .+......+.++.+...+.+.......+.+.
T Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1034 (1321)
T 4f4c_A 955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFA 1034 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999999999999999999999999875788753765421478999999998778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCC-CCCCEEEEEEEECCCEEEEE
Q ss_conf 99999999999999999742058999986657999999999852189983476755999-93000001899589399998
Q 000904 941 IQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDS-PLVLKGISCTFEGGHKIGIV 1019 (1232)
Q Consensus 941 i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~~~-~~vL~~isl~I~~GekigIV 1019 (1232)
.....+++..+.+++|+.++.+.++|.+ +...+++.||..|.|+|+||+|+|+.+. .+||+|+||+|++|||||||
T Consensus 1035 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~---~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIV 1111 (1321)
T 4f4c_A 1035 TSYFPEYAKATFAGGIIFGMLRKISKID---SLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALV 1111 (1321)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHCCCSSC---TTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEE
T ss_conf 9999999999999998999860766577---7667787888888189998798579999882124516998898999998
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCC---CCCCHHHHHHHH
Q ss_conf 79999868899998146568852899999617998967663017888268877765477603779---999999999999
Q 000904 1020 GRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPL---SQHTDQEIWEVL 1096 (1232)
Q Consensus 1020 GrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~---~~~sd~eI~~aL 1096 (1232)
||||||||||+++|+|+++|++|+|.|||+||+++++++||+++++|||||+||+||||+||... .+++|+|+|+|+
T Consensus 1112 G~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al 1191 (1321)
T 4f4c_A 1112 GPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAA 1191 (1321)
T ss_dssp CSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99998199999999568638997899999986549999998545998789973272399997454999999999999999
Q ss_pred HHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 98599188984005875322389998893699999999987059988998666779899979999999998559938999
Q 000904 1097 AKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVIT 1176 (1232)
Q Consensus 1097 ~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~ 1176 (1232)
++++++++|.++|+||||.|+|+|.|||||||||+|||||++|+|+|||||||||+||.+||+.||++|++.+++||+|+
T Consensus 1192 ~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~ 1271 (1321)
T 4f4c_A 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIV 1271 (1321)
T ss_dssp HHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEE
T ss_pred HHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98298499971767899982388915699999999999999717998999681115789999999999999739998999
Q ss_pred EECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 84492356401869999598797736914787203978999999998
Q 000904 1177 VAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1177 IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~~ 1223 (1232)
||||++||++||+|+|||+|+|+|+|+|++|+++ +|.|++|++...
T Consensus 1272 IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1272 IAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp ECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C-----------
T ss_pred ECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHH
T ss_conf 6068999996999999989899998888999849-809999999998
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=929.54 Aligned_cols=908 Identities=17% Similarity=0.202 Sum_probs=678.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------C------------CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 998898999999999999999899999999998715887-------7------------750489999999999999999
Q 000904 306 ICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKA-------G------------FKYEGYVLAITLFVAKILESL 366 (1232)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~-------~------------~~~~g~~la~~l~~~~~~~~~ 366 (1232)
+..|..++++.++.++..++....|+++..+++.+.... . .......++..++...++..+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1284)
T 3g5u_A 44 WLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLI 123 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57999999999999999999999999999999998613444332222221111100244688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999715832220368844677899978999967989-9899999999999999999
Q 000904 367 SQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIIL 445 (1232)
Q Consensus 367 ~~~~~~~~~~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~~~~w~~plqi~ial~~L 445 (1232)
+..-..+...+.+.++-..+...+|+|.++++..-.+++++|+++|.++.|++.+.++.. .+..+....+.++.+++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (1284)
T 3g5u_A 124 VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIG 203 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999998699899756887789999998899999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 999979-9999999999999988999999999999999999999999999995669999830069999999999999999
Q 000904 446 FHAVGL-ATIAALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYK 524 (1232)
Q Consensus 446 ~~~lG~-~~l~gl~~~~i~~~~~~~~a~~~~~~q~~~m~~~D~R~~~~~E~L~~ik~IK~~awE~~f~~~I~~~R~~E~~ 524 (1232)
+. +.| .+++.+++++++..+..++.+...+..++.++..++......|.++|||+||.|++|+.+.++..+.-++-.+
T Consensus 204 ~~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~ 282 (1284)
T 3g5u_A 204 FT-RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKR 282 (1284)
T ss_dssp HH-TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99-98999999999999999999999999999999999999999999999997879999846539999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999986--7669999999999987088767025978999999999999986999999999999999999
Q 000904 525 WLSAVQLRKAYNTFLFW--SSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIV 602 (1232)
Q Consensus 525 ~l~~~~~~~~~~~~~~~--~~p~lv~~~tF~~~~l~g~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~Ri~ 602 (1232)
.-.+.....+....+.. .....+..+++|.+....+.++++.+++++..+.....|+..+...+..+.++.++.+|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 362 (1284)
T 3g5u_A 283 LGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVF 362 (1284)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999929988999999999999999999999999999999999999999
Q ss_pred HHHCCCC-CCCCHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9717987-882000025887787530899843898248999884010177861898389970355546889998871087
Q 000904 603 NFLEAPE-LQSMNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP 681 (1232)
Q Consensus 603 ~fL~~~e-~~~~~~~~~~~~~~~~~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~ 681 (1232)
++++.++ .++......+. .+..+.|+++|++|+|+.+.+.++|+|+||++++|++++|||++|||||||+++|+|+++
T Consensus 363 ~~l~~~~~~~~~~~~~~~~-~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 363 KIIDNKPSIDSFSKSGHKP-DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp HTTSCCCCCSSCCSSCCCC-TTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred HHHCCCCCCCCCCCCCCCC-CCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9972898677666567777-777771899998997699998710125458975998899989999979999999807889
Q ss_pred CCCCCCC-------------------------------------------------------------------------
Q ss_conf 7655432-------------------------------------------------------------------------
Q 000904 682 HTQGTIL------------------------------------------------------------------------- 688 (1232)
Q Consensus 682 ~~~G~v~------------------------------------------------------------------------- 688 (1232)
+.+|+|.
T Consensus 442 ~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 521 (1284)
T 3g5u_A 442 PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG 521 (1284)
T ss_dssp CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCS
T ss_pred CCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
T ss_conf 99738999999877579999986548986887537766999974579899999999999982969999746563345014
Q ss_pred ----------------------------------------------------------------------------CC--
Q ss_conf ----------------------------------------------------------------------------21--
Q 000904 689 ----------------------------------------------------------------------------QN-- 690 (1232)
Q Consensus 689 ----------------------------------------------------------------------------~~-- 690 (1232)
.+
T Consensus 522 ~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~ 601 (1284)
T 3g5u_A 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGV 601 (1284)
T ss_dssp SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCE
T ss_conf 78786599999999999999529998999798777799999999999999739998999940778997499899998999
Q ss_pred ----------------C---CCCCCC----C--C------CC--------------------------------------
Q ss_conf ----------------1---000144----6--8------88--------------------------------------
Q 000904 691 ----------------S---WLAANV----E--N------PN-------------------------------------- 701 (1232)
Q Consensus 691 ----------------~---wl~~~~----~--~------~~-------------------------------------- 701 (1232)
| +..... . . ..
T Consensus 602 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1284)
T 3g5u_A 602 IVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTK 681 (1284)
T ss_dssp CCCEECHHHHHHTTSHHHHHHHHTC-------------------------------------------------------
T ss_pred EEEECCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99978899998678779999997430022111333333222223443333333320003454333445642233211024
Q ss_pred ---------C-------------------------------------------------------CHHHHHHHHHHHHHH
Q ss_conf ---------6-------------------------------------------------------235899999999999
Q 000904 702 ---------V-------------------------------------------------------STLRLIVVYLLIGFV 717 (1232)
Q Consensus 702 ---------~-------------------------------------------------------~~~~~~~vy~~l~~~ 717 (1232)
. ....+..+|..+++.
T Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 761 (1284)
T 3g5u_A 682 EALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGII 761 (1284)
T ss_dssp --CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 55531366258999999845157999999999999999999999999999999855685033677999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999998719646448--88887999999964878652304679999999999999
Q 000904 718 STLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYD--STPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTNAYS 795 (1232)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd--~~p~GrilnR~s~D~~~id~~~~~~l~~~~~~~~~~~~ 795 (1232)
..++.+.+.+.....+.+...++|.++++++++.|++||| .+++|++++|+++|+..++..++..+...+.....++.
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~ 841 (1284)
T 3g5u_A 762 SFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGT 841 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999998399888757899889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999999899999---998799999999999999999999986121689999999998111788661308999999999
Q 000904 796 NLGVLAVVTWQVLF---VSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 796 ~i~v~~~~~~~~~l---~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~~~~~f~~~~~~ 872 (1232)
.++++....|.+.+ +..|+.++..+.+..+...... ...........++.|++.|+.+||+|+.++++.+++.+
T Consensus 842 ~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~ 918 (1284)
T 3g5u_A 842 GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQAL---KDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQ 918 (1284)
T ss_dssp HHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999996999999999999999999999999999999---99999999999999999889999984659999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 897107915789999999999999999999999---9999-986699976667999999999998799999999999999
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISS---AAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLA 948 (1232)
Q Consensus 873 ~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~---~~~~-~v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~i~~~~~~e 948 (1232)
..+...+... ....|............... ...+ ..+...+.++.+.+...+.+.......+........+..
T Consensus 919 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 995 (1284)
T 3g5u_A 919 SLQIPYRNAM---KKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYA 995 (1284)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCST
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999---9999999999999999999999999999999990980699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCCCCCHH
Q ss_conf 99999999974205899998665799999999985218998347675599-99300000189958939999879999868
Q 000904 949 NYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 949 ~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~~-~~~vL~~isl~I~~GekigIVGrTGSGKS 1027 (1232)
....+.+|+.++.+.+++.+...+ .+.+.++..|.|+++|++++|+.. ..++|+|+||+|++||++||||+||||||
T Consensus 996 ~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKS 1073 (1284)
T 3g5u_A 996 KATVSASHIIRIIEKTPEIDSYST--QGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKS 1073 (1284)
T ss_dssp HHHHHHHHHHHHHHSCCSSSSCCS--SCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCCCCCHH
T ss_conf 999999999999838876666555--665456777857999989977999987002030599769988999889999789
Q ss_pred HHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC---CCCHHHHHHHHHHCCCCHH
Q ss_conf 8999981465688528999996179989676630178882688777654776037799---9999999999998599188
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS---QHTDQEIWEVLAKCHLGEA 1104 (1232)
Q Consensus 1028 TLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~---~~sd~eI~~aL~~~~L~~~ 1104 (1232)
||+++|+|+++|++|+|.+||+|+++++.+++|+++++|||||.+|++|||+|+.... ..++++++++++++++.++
T Consensus 1074 Tl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~ 1153 (1284)
T 3g5u_A 1074 TVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153 (1284)
T ss_dssp HHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 99999946867899779899998000789999702689877874066669999746687789999999999998395999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 98400587532238999889369999999998705998899866677989997999999999855993899984492356
Q 000904 1105 VREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTV 1184 (1232)
Q Consensus 1105 i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI 1184 (1232)
+..+|+|+|+.++|+|.+||||||||+||||||+++|+||+|||||+++|.++++.+++.|++..+++|+|+||||++++
T Consensus 1154 i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI 1233 (1284)
T ss_dssp HSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGG
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 97270424561178889338999999999999974999999868755579999999999999867999899995587999
Q ss_pred HHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 4018699995987977369147872039789999999983
Q 000904 1185 MDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1185 ~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~~~ 1224 (1232)
.+||||+||++|+++|.|+|++|+++ ++.|++|++....
T Consensus 1234 ~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1234 QNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAG 1272 (1284)
T ss_dssp GSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC-
T ss_pred HCCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHHH
T ss_conf 80998999989989997789999847-7779999999761
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=705.02 Aligned_cols=516 Identities=18% Similarity=0.257 Sum_probs=440.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999999999999999999999999999999999999999998719646448888879999999648786523046799
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI 784 (1232)
Q Consensus 705 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~~id~~~~~~l~ 784 (1232)
..+...|..++++..++.+...+.+...+.+...+++.++++++++.|++|||++++|++++|+++|++.++..+...+.
T Consensus 136 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~ 215 (1321)
T 4f4c_A 136 MNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIG 215 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999788989987998489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999998999999987999999999999999999999861216899999999981117886613089
Q 000904 785 FAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864 (1232)
Q Consensus 785 ~~~~~~~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~~~~ 864 (1232)
.++......++.++++....|.+.++.+....+.......+.+..+...+......+...++..|++.|+.+||+|+.++
T Consensus 216 ~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 295 (1321)
T 4f4c_A 216 MAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLR 295 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999999999999998999999999999999999999999999999999999999999999998399999821429
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998971079157899999999999999999999999999-9866999766679999999999987999999999
Q 000904 865 RFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQN 943 (1232)
Q Consensus 865 ~f~~~~~~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~i~~ 943 (1232)
++.+++.+..+...+..........+.......+..+.......+ ......|.+++|.+...+.|...+..++..+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~ 375 (1321)
T 4f4c_A 296 YELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQ 375 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999959986999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC-CCCCCCEEEEEEEECCCEEEEECCC
Q ss_conf 999999999999997420589999866579999999998521899834767559-9993000001899589399998799
Q 000904 944 QCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRP-DSPLVLKGISCTFEGGHKIGIVGRT 1022 (1232)
Q Consensus 944 ~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~-~~~~vL~~isl~I~~GekigIVGrT 1022 (1232)
...+.....+.+|+.++.+.+++.+...+ ......+..|.|+|+|++|+|+. ...++|+|+||+|++||++||||+|
T Consensus 376 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~s 453 (1321)
T 4f4c_A 376 LAVLGTAQGAASGIYEVLDRKPVIDSSSK--AGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSS 453 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSSCSSS--CCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECC
T ss_conf 99999999999999999717853456665--5656778887679998554079999874333318862288278998058
Q ss_pred CCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC-CCCHHHHHHHHHHCCC
Q ss_conf 998688999981465688528999996179989676630178882688777654776037799-9999999999998599
Q 000904 1023 GSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHL 1101 (1232)
Q Consensus 1023 GSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L 1101 (1232)
|||||||+++|.|+++|.+|+|.+||+||++++++++|++++||||||.||+||||+|+.... +.+|+++++|++.|++
T Consensus 454 GsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533 (1321)
T ss_dssp SSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 98577888875456516448615799650112599985046665875332078616788641552209999999987565
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 18898400587532238999889369999999998705998899866677989997999999999855993899984492
Q 000904 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI 1181 (1232)
Q Consensus 1102 ~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl 1181 (1232)
++++..+|+|+||.|+|+|.+||||||||+|||||++++|+||+||||||++|.+|+..+|+.|++..+++|+|+||||+
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred HHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 46887088888607558988777778799999998725999899845544688789999999999984798899973638
Q ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 356401869999598797736914787203978999999998
Q 000904 1182 PTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1182 ~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~~ 1223 (1232)
+++.+||+|+||++|+|+|.|+|++|+++ ++.|++|++...
T Consensus 614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 614 STIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHCCEEEEEECCEEECCCCHHHHHHH-HHHHHHHHHHHH
T ss_conf 78986898999639965136899999985-327999999622
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=668.89 Aligned_cols=515 Identities=18% Similarity=0.255 Sum_probs=429.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999999999999999999999999999999999999999998719646448888879999999648786523046799
Q 000904 705 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLI 784 (1232)
Q Consensus 705 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~~id~~~~~~l~ 784 (1232)
..+..+|..++++..++.+.+.+.....+.+...+++.++++++++.|++|||.+++|++++|+++|++.++..++..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 108 TTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999869989975688778999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999999999999999998999999987999999999999999999999861216899999999981117886613089
Q 000904 785 FAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 864 (1232)
Q Consensus 785 ~~~~~~~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~~~~ 864 (1232)
.++......++.++++....|.+.++.+....+......++.+..+...+......+...+++.|++.|+.+||+|+.++
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~ 267 (1284)
T 3g5u_A 188 MFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHH
T ss_conf 99999999999999999998999999999999999999999999999999999999999999999997879999846539
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998971079157899999999999999999999999999-9866999766679999999999987999999999
Q 000904 865 RFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQN 943 (1232)
Q Consensus 865 ~f~~~~~~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~i~~ 943 (1232)
++.+++.+..+...+..............-..++..........+ ......|.+++|.+...+.+.......+......
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 347 (1284)
T 3g5u_A 268 KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPN 347 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999929988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCC
Q ss_conf 9999999999999974205899998665799999999985218998347675599-993000001899589399998799
Q 000904 944 QCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRT 1022 (1232)
Q Consensus 944 ~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~~-~~~vL~~isl~I~~GekigIVGrT 1022 (1232)
+..+.....+.+|+.++.+.+++.+...+...++ .+..|.|+|+|++++|+.+ .+++|+|+||+|++||++||||+|
T Consensus 348 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~s 425 (1284)
T 3g5u_A 348 IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNS 425 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCC--TTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCC
T ss_conf 9999999999999999972898677666567777--77777189999899769999871012545897599889998999
Q ss_pred CCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC-CCCHHHHHHHHHHCCC
Q ss_conf 998688999981465688528999996179989676630178882688777654776037799-9999999999998599
Q 000904 1023 GSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCHL 1101 (1232)
Q Consensus 1023 GSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~L 1101 (1232)
|||||||+++|.|+++|++|+|.+||+|+..++.+++|+++++|||||.+|++|||+|+.... +.++++++++++.+++
T Consensus 426 GsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~ 505 (1284)
T 3g5u_A 426 GCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANA 505 (1284)
T ss_dssp SSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 99799999998078899973899999987757999998654898688753776699997457989999999999998296
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 18898400587532238999889369999999998705998899866677989997999999999855993899984492
Q 000904 1102 GEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRI 1181 (1232)
Q Consensus 1102 ~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl 1181 (1232)
.+++..+|.|+|+.++|+|.+||||||||+|||||++++|+||+||||||+||.+|++.+++.+++..+++|+|+||||+
T Consensus 506 ~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 585 (1284)
T 3g5u_A 506 YDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRL 585 (1284)
T ss_dssp HHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 99997465633450147878659999999999999952999899979877779999999999999973999899994077
Q ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 35640186999959879773691478720397899999999
Q 000904 1182 PTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1182 ~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~ 1222 (1232)
+++.+||+|+||++|+++|.|+|++|+++ ++.|++++...
T Consensus 586 ~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 625 (1284)
T 3g5u_A 586 STVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQ 625 (1284)
T ss_dssp HHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHT
T ss_pred HHHHCCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHH
T ss_conf 89974998999989999997889999867-87799999974
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=642.19 Aligned_cols=557 Identities=24% Similarity=0.300 Sum_probs=452.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988989999999999999998999999999987158877750489999999999999999999999999999999999
Q 000904 305 IICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLIGLKVRS 384 (1232)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~la~~l~~~~~~~~~~~~~~~~~~~~~g~riR~ 384 (1232)
++.+++.++...++.++..++..+.|++++.+++.+..+... ..-..++..+++..++..++.....+...+.+.++..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (598)
T 3qf4_B 32 LRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF-DLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVF 110 (598)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999736888-9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999971583222036884467789997899996798-99899999999999999999999979999999999999
Q 000904 385 LLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVIMIT 463 (1232)
Q Consensus 385 ~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~~~~w~~plqi~ial~~L~~~lG~~~l~gl~~~~i~ 463 (1232)
.+...+|+|.++++....+++++|+++|.++.|++++.++. ..++.+|..++.++.++++++..-.+.+++.++++++.
T Consensus 111 ~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~ 190 (598)
T 3qf4_B 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLT 190 (598)
T ss_dssp HHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999997799999768888999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99889999999999999999999999999999956699998300699999999999999999999999999999998676
Q 000904 464 VLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNTFLFWSS 543 (1232)
Q Consensus 464 ~~~~~~~a~~~~~~q~~~m~~~D~R~~~~~E~L~~ik~IK~~awE~~f~~~I~~~R~~E~~~l~~~~~~~~~~~~~~~~~ 543 (1232)
+++...+.+...+++++..+..+++.+.+.|.++|||+||.|+||+.+.++..+.+++..+...+.....+....+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (598)
T 3qf4_B 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMV 270 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999737999997487099999999999999999999999999999999999
Q ss_pred H--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCC
Q ss_conf 6--99999999999870887670259789999999999999869999999999999999999717987882000025887
Q 000904 544 P--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNI 621 (1232)
Q Consensus 544 p--~lv~~~tF~~~~l~g~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~ 621 (1232)
. ..+.++.++.+....+.++++.+++.+.+...+..|+..++..+..+.++.+|++||.++++.++..+
T Consensus 271 ~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~--------- 341 (598)
T 3qf4_B 271 NNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--------- 341 (598)
T ss_dssp HHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---------
T ss_conf 99999999999999998599789999999999999999999999999999999999999999976887777---------
Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78753089984389824899988401017786189838997035554688999887108776554322110001446888
Q 000904 622 ENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWLAANVENPN 701 (1232)
Q Consensus 622 ~~~~~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~~wl~~~~~~~~ 701 (1232)
.+
T Consensus 342 -------------------~~----------------------------------------------------------- 343 (598)
T 3qf4_B 342 -------------------DP----------------------------------------------------------- 343 (598)
T ss_dssp -------------------CS-----------------------------------------------------------
T ss_pred -------------------CC-----------------------------------------------------------
T ss_conf -------------------77-----------------------------------------------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62358999999999999999999999999999999999999999998719646448888879999999648786523046
Q 000904 702 VSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPF 781 (1232)
Q Consensus 702 ~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~~id~~~~~ 781 (1232)
T Consensus 344 -------------------------------------------------------------------------------- 343 (598)
T 3qf4_B 344 -------------------------------------------------------------------------------- 343 (598)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79999999999999999999998999999987999999999999999999999861216899999999981117886613
Q 000904 782 SLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 861 (1232)
Q Consensus 782 ~l~~~~~~~~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~ 861 (1232)
T Consensus 344 -------------------------------------------------------------------------------- 343 (598)
T 3qf4_B 344 -------------------------------------------------------------------------------- 343 (598)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 08999999999897107915789999999999999999999999999998669997666799999999999879999999
Q 000904 862 EEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSI 941 (1232)
Q Consensus 862 ~~~~f~~~~~~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~i 941 (1232)
T Consensus 344 -------------------------------------------------------------------------------- 343 (598)
T 3qf4_B 344 -------------------------------------------------------------------------------- 343 (598)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECC
Q ss_conf 99999999999999997420589999866579999999998521899834767559999300000189958939999879
Q 000904 942 QNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGR 1021 (1232)
Q Consensus 942 ~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGr 1021 (1232)
.+.+.++..|.|+++|++++|+++ .++|+|+||++++||++||||+
T Consensus 344 ---------------------------------~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~ 389 (598)
T 3qf4_B 344 ---------------------------------DAVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGP 389 (598)
T ss_dssp ---------------------------------SCCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECC
T ss_pred ---------------------------------CCCCCCCCCCEEEEEEEEEECCCC-CCCCCCEEEEECCCCEEEEECC
T ss_conf ---------------------------------777777777718999989977999-8601222799869988999899
Q ss_pred CCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC-CCCHHHHHHHHHHCC
Q ss_conf 9998688999981465688528999996179989676630178882688777654776037799-999999999999859
Q 000904 1022 TGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEIWEVLAKCH 1100 (1232)
Q Consensus 1022 TGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~-~~sd~eI~~aL~~~~ 1100 (1232)
||||||||+++|.|+++|++|+|.+||+|+.+++.+++|++++++||||.+|++||++|+.... ..++++++++++.++
T Consensus 390 sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~ 469 (598)
T 3qf4_B 390 TGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTH 469 (598)
T ss_dssp TTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 99969999999945857998089999998301889999841089907982324639999744799999999999999969
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 91889840058753223899988936999999999870599889986667798999799999999985599389998449
Q 000904 1101 LGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHR 1180 (1232)
Q Consensus 1101 L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHr 1180 (1232)
+.+.+..+|+|+|+.++++|.+||||||||+|||||++++|+||+||||||++|++++..+++.+++..+++|+|+||||
T Consensus 470 ~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 549 (598)
T 3qf4_B 470 SDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHR 549 (598)
T ss_dssp CHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCC
T ss_pred CHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 78889746453236422788987999999999999996499999998976679999999999999998089989999427
Q ss_pred HHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 23564018699995987977369147872039789999999983
Q 000904 1181 IPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWS 1224 (1232)
Q Consensus 1181 l~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~~~ 1224 (1232)
++++..||+|++|++|+++|.|+|++|+++ ++.|++++.+...
T Consensus 550 l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 550 LNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp TTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHHHHHG
T ss_pred HHHHHCCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHHH
T ss_conf 789971998999989999987789999867-8779999999764
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=641.64 Aligned_cols=562 Identities=20% Similarity=0.321 Sum_probs=454.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999988989999999999999998999999999987158877750489999999999999999999999999999
Q 000904 299 SVLRTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFKYEGYVLAITLFVAKILESLSQRQWYFRSRLI 378 (1232)
Q Consensus 299 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~la~~l~~~~~~~~~~~~~~~~~~~~~ 378 (1232)
..++.+++.+|+.+++..++.++..++..+.|+++..+++....... ...-+.++..+++..++..++..-..+...+.
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-FSLVLKTGILMLIVALIGAVGGIGCTVFASYA 90 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999873698-79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999997158322203688446778999789999679899-899999999999999999999979999999
Q 000904 379 GLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-FHQIWTTSVQLCIALIILFHAVGLATIAAL 457 (1232)
Q Consensus 379 g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~-~~~~w~~plqi~ial~~L~~~lG~~~l~gl 457 (1232)
+.++...+...+|+|.++++.....++++|+++|.++.|++++.++... +..++..++.++.++++++..-.+.+++.+
T Consensus 91 ~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l 170 (587)
T 3qf4_A 91 SQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLI 170 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999997889799765888999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_conf 999999998899999999999999999999999999999566999983006999999999----9999999999999999
Q 000904 458 VVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEI----LRNVEYKWLSAVQLRK 533 (1232)
Q Consensus 458 ~~~~i~~~~~~~~a~~~~~~q~~~m~~~D~R~~~~~E~L~~ik~IK~~awE~~f~~~I~~----~R~~E~~~l~~~~~~~ 533 (1232)
+++++..++..++.+...+.+++.++..+++.+.++|.++|||+||.|+||+.+.++..+ .|+.+.+..+......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (587)
T 3qf4_A 171 FLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFAL 250 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999855999998621499999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999986766999999999998708876702597899999999999998699999999999999999997179878820
Q 000904 534 AYNTFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQSM 613 (1232)
Q Consensus 534 ~~~~~~~~~~p~lv~~~tF~~~~l~g~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 613 (1232)
....+ ......+.+++++.+...++.++.+.+++.+.++..+..|+..++..+..+.++.+|.+|+.++++.++...
T Consensus 251 ~~~~~--~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~- 327 (587)
T 3qf4_A 251 PLFIF--IVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE- 327 (587)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC-
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-
T ss_conf 99999--999999999999999998499389999999999999999999999999999999999999999976897657-
Q ss_pred HHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00025887787530899843898248999884010177861898389970355546889998871087765543221100
Q 000904 614 NIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSWL 693 (1232)
Q Consensus 614 ~~~~~~~~~~~~~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~~wl 693 (1232)
+.+.+
T Consensus 328 --------------------------~~~~~------------------------------------------------- 332 (587)
T 3qf4_A 328 --------------------------EADNA------------------------------------------------- 332 (587)
T ss_dssp --------------------------CCTTC-------------------------------------------------
T ss_pred --------------------------CCCCC-------------------------------------------------
T ss_conf --------------------------88776-------------------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 01446888623589999999999999999999999999999999999999999987196464488888799999996487
Q 000904 694 AANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLS 773 (1232)
Q Consensus 694 ~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~ 773 (1232)
T Consensus 333 -------------------------------------------------------------------------------- 332 (587)
T 3qf4_A 333 -------------------------------------------------------------------------------- 332 (587)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86523046799999999999999999999989999999879999999999999999999998612168999999999811
Q 000904 774 IVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAG 853 (1232)
Q Consensus 774 ~id~~~~~~l~~~~~~~~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G 853 (1232)
T Consensus 333 -------------------------------------------------------------------------------- 332 (587)
T 3qf4_A 333 -------------------------------------------------------------------------------- 332 (587)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 17886613089999999998971079157899999999999999999999999999986699976667999999999998
Q 000904 854 AMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSL 933 (1232)
Q Consensus 854 ~~tIraf~~~~~f~~~~~~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~v~~~~g~~~~g~~gl~lsy~~~l 933 (1232)
T Consensus 333 -------------------------------------------------------------------------------- 332 (587)
T 3qf4_A 333 -------------------------------------------------------------------------------- 332 (587)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 79999999999999999999999974205899998665799999999985218998347675599993000001899589
Q 000904 934 NSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGG 1013 (1232)
Q Consensus 934 ~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~~~~~vL~~isl~I~~G 1013 (1232)
.+.++..|.|+++|++++|+++.+++|+|+||++++|
T Consensus 333 -------------------------------------------~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G 369 (587)
T 3qf4_A 333 -------------------------------------------LALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPG 369 (587)
T ss_dssp -------------------------------------------BCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTT
T ss_pred -------------------------------------------CCCCCCCCCEEEEEEEEECCCCCCCCEECEEEEECCC
T ss_conf -------------------------------------------5668888807997889984899976421117998699
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC-CCCHHHH
Q ss_conf 399998799998688999981465688528999996179989676630178882688777654776037799-9999999
Q 000904 1014 HKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQEI 1092 (1232)
Q Consensus 1014 ekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~-~~sd~eI 1092 (1232)
|++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++++||||.+|++|||+|+.... ..+++++
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 449 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEI 449 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHH
T ss_conf 88999899999799999999278669986798999983407899998413897789867675599998524889999999
Q ss_pred HHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999859918898400587532238999889369999999998705998899866677989997999999999855993
Q 000904 1093 WEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADC 1172 (1232)
Q Consensus 1093 ~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~ 1172 (1232)
+++++.+++.+++..+|+|+|+.++++|.+||||||||++||||++++|+||+||||||++|++++..+++.+++..+++
T Consensus 450 ~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~ 529 (587)
T 3qf4_A 450 VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529 (587)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999968499997565312127518989929999999999999972999999979754479999999999999867999
Q ss_pred EEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 899984492356401869999598797736914787203978999999998
Q 000904 1173 TVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYW 1223 (1232)
Q Consensus 1173 TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~~ 1223 (1232)
|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++++++.-
T Consensus 530 tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREIYESQF 579 (587)
T ss_dssp EEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHHHHC
T ss_pred EEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHH
T ss_conf 89998227688981998999989989997889999867-839999999984
No 7
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=624.70 Aligned_cols=560 Identities=22% Similarity=0.290 Sum_probs=478.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-C-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998898999999999999999899999999998715887775-0-----489999999999999999999999999
Q 000904 302 RTIIICYWRDIFMSGFFALLKVLTLSAGPLLLNAFILVTEGKAGFK-Y-----EGYVLAITLFVAKILESLSQRQWYFRS 375 (1232)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~-~-----~g~~la~~l~~~~~~~~~~~~~~~~~~ 375 (1232)
+.+++.+++.++...++.++..++..+.|++++.+++.+....... . ..+.++.++++..++..++.....+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (578)
T 4a82_A 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLA 85 (578)
T ss_dssp HHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988999999999999999999999999999999999981687114677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999715832220368844677899978999967989-9899999999999999999999979999
Q 000904 376 RLIGLKVRSLLTAAIYKKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATI 454 (1232)
Q Consensus 376 ~~~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~~~~w~~plqi~ial~~L~~~lG~~~l 454 (1232)
.+.+.++...+...+|+|.++++....+++++|+++|.++.|++++.++.. .++.+|..++.+++++++++..-.+.++
T Consensus 86 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 165 (578)
T 4a82_A 86 QWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTL 165 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998789999768986999999999999999999999999999999999999999999699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999889999999999999999999999999999956699998300699999999999999999999999999
Q 000904 455 AALVVIMITVLCNAPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKA 534 (1232)
Q Consensus 455 ~gl~~~~i~~~~~~~~a~~~~~~q~~~m~~~D~R~~~~~E~L~~ik~IK~~awE~~f~~~I~~~R~~E~~~l~~~~~~~~ 534 (1232)
++++++++.+++...+.++..+.+++.++..+++.+.++|.++|||+||.|+||+.+.++..+.++++.+...+.....+
T Consensus 166 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
T 4a82_A 166 AALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245 (578)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999824999998166499999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999867669--9999999999870887670259789999999999999869999999999999999999717987882
Q 000904 535 YNTFLFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRVIPDVIGVFIQANVAFSRIVNFLEAPELQS 612 (1232)
Q Consensus 535 ~~~~~~~~~p~--lv~~~tF~~~~l~g~~Lt~~~vFt~lalf~iL~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~ 612 (1232)
....+...... .+.++.++.+....+.++++.+++.+.++..+..|+..++..+..+.++.+|++||.++++.++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999998599589999999999999999999999999999999999999999976897666
Q ss_pred CHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 00002588778753089984389824899988401017786189838997035554688999887108776554322110
Q 000904 613 MNIRQKGNIENVNHVISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTILQNSW 692 (1232)
Q Consensus 613 ~~~~~~~~~~~~~~~I~i~~~sf~w~~~~~~~~L~~Inl~i~~G~~vaIvG~vGSGKSTLL~ailGe~~~~~G~v~~~~w 692 (1232)
+...+
T Consensus 326 ---------------------------~~~~~------------------------------------------------ 330 (578)
T 4a82_A 326 ---------------------------NGVGA------------------------------------------------ 330 (578)
T ss_dssp ---------------------------CCTTC------------------------------------------------
T ss_pred ---------------------------CCCCC------------------------------------------------
T ss_conf ---------------------------78776------------------------------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 00144688862358999999999999999999999999999999999999999998719646448888879999999648
Q 000904 693 LAANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDL 772 (1232)
Q Consensus 693 l~~~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~ 772 (1232)
T Consensus 331 -------------------------------------------------------------------------------- 330 (578)
T 4a82_A 331 -------------------------------------------------------------------------------- 330 (578)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78652304679999999999999999999998999999987999999999999999999999861216899999999981
Q 000904 773 SIVDLDVPFSLIFAVGATTNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIA 852 (1232)
Q Consensus 773 ~~id~~~~~~l~~~~~~~~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~ 852 (1232)
T Consensus 331 -------------------------------------------------------------------------------- 330 (578)
T 4a82_A 331 -------------------------------------------------------------------------------- 330 (578)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11788661308999999999897107915789999999999999999999999999998669997666799999999999
Q 000904 853 GAMTIRAFEEEDRFFAKNLDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLS 932 (1232)
Q Consensus 853 G~~tIraf~~~~~f~~~~~~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~v~~~~g~~~~g~~gl~lsy~~~ 932 (1232)
T Consensus 331 -------------------------------------------------------------------------------- 330 (578)
T 4a82_A 331 -------------------------------------------------------------------------------- 330 (578)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEC
Q ss_conf 87999999999999999999999997420589999866579999999998521899834767559999300000189958
Q 000904 933 LNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEG 1012 (1232)
Q Consensus 933 l~~~l~~~i~~~~~~e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~~~~~vL~~isl~I~~ 1012 (1232)
.+.++..|.|+++|++++|+++.+++|+|+||++++
T Consensus 331 --------------------------------------------~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~ 366 (578)
T 4a82_A 331 --------------------------------------------QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEK 366 (578)
T ss_dssp --------------------------------------------CCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECT
T ss_pred --------------------------------------------CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECC
T ss_conf --------------------------------------------666777880799999997589997413433799879
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC-CCCHHH
Q ss_conf 9399998799998688999981465688528999996179989676630178882688777654776037799-999999
Q 000904 1013 GHKIGIVGRTGSGKTTLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS-QHTDQE 1091 (1232)
Q Consensus 1013 GekigIVGrTGSGKSTLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~-~~sd~e 1091 (1232)
||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|++++++||||.+|++||++|+.... ..++++
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 446 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE 446 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHH
T ss_conf 99999989999859999999846788999679999998442789999600689928983476459999852799988999
Q ss_pred HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999985991889840058753223899988936999999999870599889986667798999799999999985599
Q 000904 1092 IWEVLAKCHLGEAVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFAD 1171 (1232)
Q Consensus 1092 I~~aL~~~~L~~~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~ 1171 (1232)
++++++.+++.+++..+|.|+|+.++++|.+||||||||++||||++++|+||+||||||++|++++..+++.+++..++
T Consensus 447 ~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~ 526 (578)
T 4a82_A 447 VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD 526 (578)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999880959999757330102530688967999999999999997499999997865457999999999999998089
Q ss_pred CEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHH
Q ss_conf 38999844923564018699995987977369147872039789999999
Q 000904 1172 CTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVRE 1221 (1232)
Q Consensus 1172 ~TVI~IAHrl~tI~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~ 1221 (1232)
+|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|+++++.
T Consensus 527 ~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~~~ 575 (578)
T 4a82_A 527 RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSI 575 (578)
T ss_dssp SEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHTT
T ss_pred CEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHH
T ss_conf 979998317899971998999989989998889999858-8389999985
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=621.56 Aligned_cols=506 Identities=20% Similarity=0.280 Sum_probs=397.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999998719646448888879999999648786523046799999999
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~~id~~~~~~l~~~~~~~ 790 (1232)
+.++.++..++.+.+.+.....+.+....++.++++++++.|+.||+.++.|++++|+++|++.++..+...+...+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b60_A 71 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999809999978898658999999879999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999999998999999987999999999999999999999861216899999999981117886613089999999
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~~~~~f~~~~ 870 (1232)
+..+..++++....|.+.++.+....+.......+.+..++..+......+...+++.|++.|..+||+|+.++++.+++
T Consensus 151 ~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 230 (582)
T 3b60_A 151 ASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999980999999999999999999999999999999999999999999999996199999837689999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9989710791578999999999999999999999999999-866999766679999999999987999999999999999
Q 000904 871 LDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFCM-VLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 949 (1232)
Q Consensus 871 ~~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~~-v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~i~~~~~~e~ 949 (1232)
.+..+...+..........|.....+.+..+.......+. .....|.+++|.+...+.|...+..++..+...+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T 3b60_A 231 DKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999849998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHH
Q ss_conf 99999999742058999986657999999999852189983476755999930000018995893999987999986889
Q 000904 950 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1029 (1232)
Q Consensus 950 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTL 1029 (1232)
...+.+|+.++.+.|++.+. . +.+.++..|.|+++|++++|+++.+++|+|+|+++++||++||||+||||||||
T Consensus 311 ~~~a~~ri~~~l~~~~~~~~---~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTL 385 (582)
T 3b60_A 311 GMAACQTLFAILDSEQEKDE---G--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_dssp HHHHHHHHHHHHHSCCSCCC---C--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCC---C--CCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHH
T ss_conf 99999999999759987667---7--777778888479998899739999744156159976999899989999989999
Q ss_pred HHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC--CCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 99981465688528999996179989676630178882688777654776037799--9999999999998599188984
Q 000904 1030 IGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS--QHTDQEIWEVLAKCHLGEAVRE 1107 (1232)
Q Consensus 1030 i~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~ 1107 (1232)
+++|.|+++|++|+|.+||+|+++++.+++|++++++||+|.+|++|+++|+.... +.++++++++++.+++.+++..
T Consensus 386 l~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 465 (582)
T 3b60_A 386 ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINK 465 (582)
T ss_dssp HHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 99986106898976979999823069999996080880687477878999985459999899999999998497999984
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHC
Q ss_conf 00587532238999889369999999998705998899866677989997999999999855993899984492356401
Q 000904 1108 KENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDC 1187 (1232)
Q Consensus 1108 ~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~~ 1187 (1232)
+|+|+|+.++++|.+||||||||++||||++++|+||+||||||++|++++..+++.+++..+++|+|+||||++++..|
T Consensus 466 ~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 545 (582)
T 3b60_A 466 MDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQA 545 (582)
T ss_dssp STTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHC
T ss_conf 50411451147988789999999999999972899899978655579899999999999996799799994547789859
Q ss_pred CEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 86999959879773691478720397899999999
Q 000904 1188 TMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1188 DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~ 1222 (1232)
|+|++|++|+++|.|+|++++++ ++.|+++++..
T Consensus 546 d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 546 DEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp SEEEEEETTEEEEEECHHHHHHH-TSSHHHHHHHT
T ss_pred CEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHH
T ss_conf 98999978889884589999876-98899999975
No 9
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=619.61 Aligned_cols=504 Identities=22% Similarity=0.319 Sum_probs=362.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999871964644888887999999964878652304679999999999
Q 000904 713 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGATTN 792 (1232)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~~id~~~~~~l~~~~~~~~~ 792 (1232)
++.++..++...+.+.....+.+....++.++++++++.|+.||+.++.|++++|+++|++.++..+...+...+...+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T 3b5x_A 73 GLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGAS 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986999997789878999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999999999899999998799999999999999999999986121689999999998111788661308999999999
Q 000904 793 AYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 872 (1232)
Q Consensus 793 ~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~~~~~f~~~~~~ 872 (1232)
.+..++++....|.+.++.+....+.......+.+..++..+......+...+++.|.+.|..+||+|+.++++.+++.+
T Consensus 153 ~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 232 (582)
T 3b5x_A 153 IIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDK 232 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999998299999999999999999999999999999999999999999999999519999970875999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8971079157899999999999999999999999999-986699976667999999999998799999999999999999
Q 000904 873 LIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYI 951 (1232)
Q Consensus 873 ~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~i~~~~~~e~~~ 951 (1232)
..+...+..........|.....+.+..........+ ......|.+++|.+...+.|...+..++..+...+.......
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T 3b5x_A 233 VSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999985998899999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 99999974205899998665799999999985218998347675599993000001899589399998799998688999
Q 000904 952 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIG 1031 (1232)
Q Consensus 952 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~~~nv~~~Y~~~~~~vL~~isl~I~~GekigIVGrTGSGKSTLi~ 1031 (1232)
.+.+|+.++.+.+++.+. . +.+.++..|.|+++|++++|+++.+++|+|+|+++++||++||||+||||||||++
T Consensus 313 ~a~~ri~~~l~~~~~~~~---~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 313 AACQTLFGLMDLETERDN---G--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHCCCCCCCC---C--CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf 999999999758976777---7--77777788828999989972899865400416998799989998999997999999
Q ss_pred HHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC--CCCHHHHHHHHHHCCCCHHHHHHC
Q ss_conf 981465688528999996179989676630178882688777654776037799--999999999999859918898400
Q 000904 1032 ALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS--QHTDQEIWEVLAKCHLGEAVREKE 1109 (1232)
Q Consensus 1032 ~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~--~~sd~eI~~aL~~~~L~~~i~~~~ 1109 (1232)
+|.|+++|++|+|.+||.|+.+++.+++|++++++||+|.+|++|+++|+.... +.++++++++++.+++.+++..+|
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 467 (582)
T 3b5x_A 388 LFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP 467 (582)
T ss_pred HHHCCCCCCCCEEEECCEEHHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCC
T ss_conf 99657789998798999985638899996485898279905310299998566889999999999999879899998476
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCE
Q ss_conf 58753223899988936999999999870599889986667798999799999999985599389998449235640186
Q 000904 1110 NGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPTVMDCTM 1189 (1232)
Q Consensus 1110 ~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~tI~~~Dr 1189 (1232)
+|+|+.++++|.+||||||||++||||++++|+||+||||||++|++++..+++.|++..+++|+|+||||++++..||+
T Consensus 468 ~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~ 547 (582)
T 3b5x_A 468 QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADE 547 (582)
T ss_pred CCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCE
T ss_conf 53345106888847999999999999997499999997854468999999999999997289989999368899981998
Q ss_pred EEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 999959879773691478720397899999999
Q 000904 1190 VLAISDGKLAEYDEPMKLMKREGSLFGQLVREY 1222 (1232)
Q Consensus 1190 VlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~ 1222 (1232)
|++|++|+++|.|+|++|+++ ++.|+++++..
T Consensus 548 i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQ 579 (582)
T ss_pred EEEEECCEEEEECCHHHHHHC-CCHHHHHHHHH
T ss_conf 999989989997789999848-85899999986
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=616.99 Aligned_cols=512 Identities=23% Similarity=0.303 Sum_probs=396.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999998719646448888879999999648786523046799999999
Q 000904 711 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRVLSRVSSDLSIVDLDVPFSLIFAVGAT 790 (1232)
Q Consensus 711 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~GrilnR~s~D~~~id~~~~~~l~~~~~~~ 790 (1232)
+.++.+...++.+.+.+.....+.+....++.++++++++.|++||+.++.|++++|+++|++.++..+...+...+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~ 147 (595)
T 2yl4_A 68 LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAG 147 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999819999977798488999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999999998999999987999999999999999999999861216899999999981117886613089999999
Q 000904 791 TNAYSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFATAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 870 (1232)
Q Consensus 791 ~~~~~~i~v~~~~~~~~~l~~~pl~~l~~~~~~~y~~~~rel~rl~~~~~s~i~~~~~Etl~G~~tIraf~~~~~f~~~~ 870 (1232)
+..+..++++....|.+.++.+....+.......+.+..++..+......+...+++.|++.|+.+||+|+.++++.+++
T Consensus 148 ~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 227 (595)
T 2yl4_A 148 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 227 (595)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999981999999999999999999999999999999999999999999999981199999837569999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998971079157899999999999999999999999999-9866999766679999999999987999999999999999
Q 000904 871 LDLIDTNASPFFQTFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 949 (1232)
Q Consensus 871 ~~~id~~~~~~~~~~~~~~wl~~rl~~l~~~~~~~~~~~-~v~~~~g~~~~g~~gl~lsy~~~l~~~l~~~i~~~~~~e~ 949 (1232)
.+..+...+..........+.......+..........+ ......|.+++|.+...+.|...+..++..+...+..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 307 (595)
T 2yl4_A 228 ASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMK 307 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999869978999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCCCCCHH
Q ss_conf 999999997420589999866579999999998521-8998347675599-99300000189958939999879999868
Q 000904 950 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGK-VDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKT 1027 (1232)
Q Consensus 950 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~-I~~~nv~~~Y~~~-~~~vL~~isl~I~~GekigIVGrTGSGKS 1027 (1232)
...+.+|+.++.+.+++.+.. ...+ +..+..|. |+++|++++|+.+ ..++|+|+||++++||++||||+||||||
T Consensus 308 ~~~s~~ri~~~l~~~~~~~~~--~~~~-~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKS 384 (595)
T 2yl4_A 308 GLGAGGRLWELLEREPKLPFN--EGVI-LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKS 384 (595)
T ss_dssp HHHHHHHHHHHHTCCCSSCSS--CSBC-CCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSST
T ss_pred HHHHHHHHHHHHCCCCCCCCC--CCCC-CCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHH
T ss_conf 999999999998389766777--7877-7767899838999889985899888120112799849988999899999799
Q ss_pred HHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHCCCCCC----CCCHHHHHHHHHHCCCCH
Q ss_conf 8999981465688528999996179989676630178882688777654776037799----999999999999859918
Q 000904 1028 TLIGALFRLVEPAGGKILVDGIDISKLGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLS----QHTDQEIWEVLAKCHLGE 1103 (1232)
Q Consensus 1028 TLi~~L~rl~ep~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdP~LF~gTIR~NLdp~~----~~sd~eI~~aL~~~~L~~ 1103 (1232)
||+++|.|+++|++|+|.+||+|+.+++.+++|++++++||+|.+|++|+++|+.... ..++++++++++.+++.+
T Consensus 385 TLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~ 464 (595)
T 2yl4_A 385 TVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVA 464 (595)
T ss_dssp HHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHH
T ss_conf 99999825857898379999998111799999732289836883268779999840587766568999999999869799
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 89840058753223899988936999999999870599889986667798999799999999985599389998449235
Q 000904 1104 AVREKENGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRAEFADCTVITVAHRIPT 1183 (1232)
Q Consensus 1104 ~i~~~~~gLd~~v~e~G~nLS~GQRQll~LARALLr~~~ILILDEaTsslD~~Td~~Iq~~Ir~~f~~~TVI~IAHrl~t 1183 (1232)
++..+|+|+|+.++++|.+||||||||++||||++++|+||+||||||++|++++..+++.+++..+++|+|+||||+++
T Consensus 465 ~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 544 (595)
T 2yl4_A 465 FIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLST 544 (595)
T ss_dssp HHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 99747320135016887868999999999999997599999998866689989999999999999659979999468789
Q ss_pred HHHCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 640186999959879773691478720397899999999832
Q 000904 1184 VMDCTMVLAISDGKLAEYDEPMKLMKREGSLFGQLVREYWSH 1225 (1232)
Q Consensus 1184 I~~~DrVlVL~~G~ivE~g~p~~Ll~~~~s~F~~lv~~~~~~ 1225 (1232)
+..||+|++|++|+++|.|+|+++++++++.|+++++.....
T Consensus 545 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~~~ 586 (595)
T 2yl4_A 545 IKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFI 586 (595)
T ss_dssp HHHSSEEEEEETTEEEEEECSCC------C------------
T ss_pred HHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 975998999989989997889999747872999999974302
Done!