Query 000905
Match_columns 1231
No_of_seqs 586 out of 3839
Neff 7.6
Searched_HMMs 46136
Date Tue Apr 2 00:38:04 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 9E-218 2E-222 2043.0 122.0 1024 197-1231 122-1154(1381)
2 PLN03130 ABC transporter C fam 100.0 9E-165 2E-169 1649.1 142.2 1191 22-1230 29-1252(1622)
3 PLN03232 ABC transporter C fam 100.0 4E-161 8E-166 1616.6 143.2 1188 22-1230 29-1249(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 4E-156 9E-161 1569.3 144.7 1203 17-1230 19-1299(1522)
5 TIGR01271 CFTR_protein cystic 100.0 6E-146 1E-150 1466.3 122.9 1022 197-1230 3-1232(1490)
6 PTZ00243 ABC transporter; Prov 100.0 1E-134 2E-139 1357.2 123.6 1032 196-1230 58-1323(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 3.9E-94 8.4E-99 892.3 88.0 927 275-1229 23-1003(1228)
8 PTZ00265 multidrug resistance 100.0 8.7E-85 1.9E-89 868.3 110.1 944 273-1226 56-1176(1466)
9 KOG0058 Peptide exporter, ABC 100.0 8.6E-86 1.9E-90 778.0 64.4 545 268-821 138-706 (716)
10 PRK11174 cysteine/glutathione 100.0 4.5E-80 9.7E-85 772.6 73.8 545 268-820 13-585 (588)
11 COG2274 SunT ABC-type bacterio 100.0 4.3E-80 9.3E-85 762.0 72.2 548 266-819 143-708 (709)
12 KOG0055 Multidrug/pheromone ex 100.0 5E-77 1.1E-81 739.8 65.9 548 268-820 652-1226(1228)
13 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.2E-76 1.6E-80 745.8 74.4 544 267-818 126-684 (686)
14 TIGR00958 3a01208 Conjugate Tr 100.0 2.1E-75 4.5E-80 741.1 72.1 538 271-815 155-710 (711)
15 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.6E-75 5.6E-80 744.1 72.7 543 268-816 145-709 (710)
16 TIGR03375 type_I_sec_LssB type 100.0 1.5E-74 3.2E-79 734.7 73.8 537 267-808 137-689 (694)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 4.9E-74 1.1E-78 731.6 72.9 542 270-817 149-707 (708)
18 COG1132 MdlB ABC-type multidru 100.0 8.6E-74 1.9E-78 712.1 71.9 537 275-820 13-565 (567)
19 PRK11176 lipid transporter ATP 100.0 2.1E-73 4.6E-78 712.0 73.0 546 269-819 17-579 (582)
20 PRK10790 putative multidrug tr 100.0 1.1E-72 2.3E-77 706.3 75.0 543 270-820 16-576 (592)
21 PRK11160 cysteine/glutathione 100.0 2.1E-72 4.6E-77 698.5 72.8 542 271-817 10-572 (574)
22 COG4988 CydD ABC-type transpor 100.0 2.6E-72 5.7E-77 653.4 67.8 529 282-820 5-556 (559)
23 TIGR02203 MsbA_lipidA lipid A 100.0 3.9E-72 8.5E-77 699.6 73.2 545 269-818 6-567 (571)
24 TIGR02204 MsbA_rel ABC transpo 100.0 3E-71 6.4E-76 692.1 72.6 548 268-818 9-574 (576)
25 TIGR01846 type_I_sec_HlyB type 100.0 3.5E-71 7.5E-76 703.4 73.9 546 268-818 130-691 (694)
26 PRK13657 cyclic beta-1,2-gluca 100.0 6.2E-71 1.3E-75 689.4 74.1 542 271-819 13-570 (588)
27 PTZ00265 multidrug resistance 100.0 2.4E-71 5.2E-76 739.5 73.0 544 272-819 820-1465(1466)
28 TIGR02868 CydC thiol reductant 100.0 7.4E-71 1.6E-75 681.1 68.6 506 270-779 6-529 (529)
29 PRK10789 putative multidrug tr 100.0 3.3E-70 7.2E-75 678.8 70.4 531 286-820 4-551 (569)
30 TIGR01192 chvA glucan exporter 100.0 2.8E-69 6E-74 671.5 74.5 542 271-819 13-570 (585)
31 KOG0056 Heavy metal exporter H 100.0 3.6E-72 7.7E-77 622.7 39.4 530 283-821 221-776 (790)
32 COG4987 CydC ABC-type transpor 100.0 2.7E-69 5.7E-74 616.6 62.2 537 275-817 14-571 (573)
33 KOG0057 Mitochondrial Fe/S clu 100.0 2.3E-69 5.1E-74 617.1 57.7 525 285-819 38-586 (591)
34 TIGR00957 MRP_assoc_pro multi 100.0 9E-69 2E-73 723.0 73.8 471 343-818 1030-1519(1522)
35 TIGR01842 type_I_sec_PrtD type 100.0 1.9E-68 4.2E-73 660.5 70.0 523 274-808 3-543 (544)
36 TIGR02857 CydD thiol reductant 100.0 2E-68 4.4E-73 659.3 68.0 511 276-791 2-529 (529)
37 PLN03130 ABC transporter C fam 100.0 2.6E-68 5.6E-73 716.8 74.1 473 343-820 978-1475(1622)
38 PLN03232 ABC transporter C fam 100.0 2.2E-67 4.8E-72 708.6 72.4 471 343-819 975-1471(1495)
39 PTZ00243 ABC transporter; Prov 100.0 2.7E-66 5.8E-71 696.8 73.9 470 348-819 1028-1546(1560)
40 COG4618 ArpD ABC-type protease 100.0 5E-64 1.1E-68 567.4 55.2 527 267-808 13-561 (580)
41 TIGR01271 CFTR_protein cystic 100.0 3.4E-63 7.3E-68 666.9 72.8 472 343-820 950-1453(1490)
42 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.8E-62 6E-67 605.7 64.4 510 271-799 11-551 (555)
43 COG5265 ATM1 ABC-type transpor 100.0 4.3E-64 9.4E-69 556.0 37.7 463 348-817 12-496 (497)
44 KOG0054 Multidrug resistance-a 100.0 2.6E-61 5.7E-66 614.3 59.7 469 343-818 883-1374(1381)
45 PRK10522 multidrug transporter 100.0 8.7E-60 1.9E-64 583.3 63.9 506 267-799 3-530 (547)
46 TIGR00954 3a01203 Peroxysomal 100.0 2.9E-55 6.3E-60 550.2 60.7 504 278-793 97-653 (659)
47 PRK14257 phosphate ABC transpo 100.0 3.9E-48 8.5E-53 445.9 25.3 263 528-808 23-314 (329)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.3E-46 7.1E-51 419.4 26.7 223 594-819 2-237 (275)
49 COG1126 GlnQ ABC-type polar am 100.0 6.6E-44 1.4E-48 366.8 20.1 200 594-808 2-226 (240)
50 cd03252 ABCC_Hemolysin The ABC 100.0 8.3E-42 1.8E-46 378.7 27.0 220 595-816 1-234 (237)
51 cd03291 ABCC_CFTR1 The CFTR su 100.0 2E-41 4.4E-46 382.1 30.3 219 590-813 35-253 (282)
52 cd03288 ABCC_SUR2 The SUR doma 100.0 2.3E-41 5.1E-46 379.2 27.8 224 592-817 17-254 (257)
53 cd03250 ABCC_MRP_domain1 Domai 100.0 1.2E-41 2.5E-46 368.7 24.5 201 595-795 1-204 (204)
54 COG1135 AbcC ABC-type metal io 100.0 4.9E-42 1.1E-46 370.2 19.7 203 595-809 2-233 (339)
55 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-41 2.7E-46 361.6 20.4 188 594-796 3-211 (248)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 9.5E-41 2.1E-45 369.5 26.0 217 595-813 1-231 (234)
57 cd03254 ABCC_Glucan_exporter_l 100.0 9.6E-41 2.1E-45 368.3 25.4 212 594-808 2-227 (229)
58 cd03253 ABCC_ATM1_transporter 100.0 1.5E-40 3.2E-45 368.5 26.8 218 595-815 1-232 (236)
59 COG1125 OpuBA ABC-type proline 100.0 1.9E-41 4E-46 354.7 18.3 200 595-809 2-227 (309)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.5E-40 3.3E-45 368.8 25.9 220 595-815 1-234 (238)
61 cd03244 ABCC_MRP_domain2 Domai 100.0 1.5E-40 3.4E-45 364.6 25.4 206 594-801 2-220 (221)
62 COG1117 PstB ABC-type phosphat 100.0 2E-41 4.2E-46 346.5 15.7 205 593-808 6-238 (253)
63 COG3840 ThiQ ABC-type thiamine 100.0 1.3E-40 2.8E-45 331.4 18.8 198 595-809 2-221 (231)
64 COG1120 FepC ABC-type cobalami 100.0 4.3E-40 9.2E-45 357.3 21.8 200 594-808 2-229 (258)
65 COG3839 MalK ABC-type sugar tr 100.0 3.9E-40 8.4E-45 370.8 22.0 201 594-809 3-225 (338)
66 cd03245 ABCC_bacteriocin_expor 100.0 1.8E-39 3.8E-44 356.0 25.2 205 594-800 2-220 (220)
67 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.2E-39 2.6E-44 351.8 23.0 200 593-808 3-228 (254)
68 PRK13631 cbiO cobalt transport 100.0 2.4E-39 5.1E-44 372.1 25.3 206 592-808 19-266 (320)
69 COG1136 SalX ABC-type antimicr 100.0 2.1E-39 4.6E-44 345.3 23.0 192 595-798 2-222 (226)
70 TIGR02314 ABC_MetN D-methionin 100.0 1.1E-39 2.4E-44 376.3 22.6 202 595-808 2-231 (343)
71 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-39 5.2E-44 338.3 22.6 210 592-816 6-245 (263)
72 COG3842 PotA ABC-type spermidi 100.0 6.7E-40 1.4E-44 370.9 19.8 202 593-809 4-228 (352)
73 PRK11650 ugpC glycerol-3-phosp 100.0 4.7E-39 1E-43 374.2 24.6 202 594-809 3-226 (356)
74 COG1122 CbiO ABC-type cobalt t 100.0 3E-39 6.4E-44 351.4 21.4 201 594-808 3-229 (235)
75 cd03261 ABC_Org_Solvent_Resist 100.0 4E-39 8.7E-44 356.7 22.7 200 595-809 1-228 (235)
76 COG1118 CysA ABC-type sulfate/ 100.0 1.7E-39 3.7E-44 349.4 18.7 201 594-809 2-229 (345)
77 COG4615 PvdE ABC-type sideroph 100.0 2.3E-36 4.9E-41 331.6 43.1 503 269-799 5-529 (546)
78 TIGR01186 proV glycine betaine 100.0 2.8E-39 6.1E-44 374.8 21.3 188 610-808 6-220 (363)
79 PRK13650 cbiO cobalt transport 100.0 1E-38 2.3E-43 361.6 23.9 203 594-808 4-230 (279)
80 cd03290 ABCC_SUR1_N The SUR do 100.0 1.4E-38 3.1E-43 348.2 24.1 198 596-795 2-218 (218)
81 COG1124 DppF ABC-type dipeptid 100.0 9E-39 1.9E-43 336.2 21.5 203 594-808 3-232 (252)
82 COG4178 ABC-type uncharacteriz 100.0 1.3E-35 2.8E-40 352.8 51.0 439 341-792 109-587 (604)
83 cd03248 ABCC_TAP TAP, the Tran 100.0 1.4E-38 3.1E-43 350.3 23.6 204 592-796 9-226 (226)
84 cd03260 ABC_PstB_phosphate_tra 100.0 7.7E-39 1.7E-43 352.6 21.1 198 595-805 1-227 (227)
85 PRK11432 fbpC ferric transport 100.0 1.5E-38 3.2E-43 368.9 24.2 202 593-809 5-228 (351)
86 PRK13637 cbiO cobalt transport 100.0 1.6E-38 3.5E-43 361.4 23.4 205 594-808 2-235 (287)
87 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.2E-38 6.9E-43 342.7 24.3 189 593-801 5-206 (207)
88 PRK13634 cbiO cobalt transport 100.0 2.1E-38 4.6E-43 360.9 23.7 203 595-808 3-236 (290)
89 PRK13643 cbiO cobalt transport 100.0 2.6E-38 5.5E-43 359.9 23.9 203 595-808 2-234 (288)
90 PRK14269 phosphate ABC transpo 100.0 2.2E-38 4.8E-43 353.1 22.9 204 594-808 2-231 (246)
91 cd03296 ABC_CysA_sulfate_impor 100.0 3.5E-38 7.5E-43 350.1 23.7 199 595-808 3-227 (239)
92 PRK09452 potA putrescine/sperm 100.0 4.5E-38 9.8E-43 367.2 24.8 202 593-809 13-236 (375)
93 PRK13647 cbiO cobalt transport 100.0 4.4E-38 9.5E-43 355.6 23.4 198 594-805 4-225 (274)
94 TIGR00972 3a0107s01c2 phosphat 100.0 4.1E-38 9E-43 351.2 22.9 203 595-808 2-233 (247)
95 PRK13635 cbiO cobalt transport 100.0 6.5E-38 1.4E-42 354.9 24.6 203 594-809 5-231 (279)
96 PRK14242 phosphate transporter 100.0 3.8E-38 8.2E-43 352.9 22.4 205 593-808 5-238 (253)
97 TIGR03265 PhnT2 putative 2-ami 100.0 3.8E-38 8.2E-43 366.2 23.2 201 594-809 4-226 (353)
98 PRK13646 cbiO cobalt transport 100.0 4.9E-38 1.1E-42 357.4 23.5 203 595-808 3-236 (286)
99 cd03219 ABC_Mj1267_LivG_branch 100.0 3.8E-38 8.2E-43 349.2 21.9 198 595-807 1-232 (236)
100 PRK14273 phosphate ABC transpo 100.0 6.7E-38 1.5E-42 351.0 23.7 205 593-808 6-239 (254)
101 cd03263 ABC_subfamily_A The AB 100.0 5.5E-38 1.2E-42 344.1 22.5 198 595-805 1-219 (220)
102 PRK10851 sulfate/thiosulfate t 100.0 7.3E-38 1.6E-42 363.8 24.6 200 595-809 3-228 (353)
103 TIGR03258 PhnT 2-aminoethylpho 100.0 4.8E-38 1E-42 365.7 23.1 202 593-809 4-230 (362)
104 TIGR00960 3a0501s02 Type II (G 100.0 4.2E-38 9.1E-43 344.0 20.9 189 595-796 2-216 (216)
105 cd03226 ABC_cobalt_CbiO_domain 100.0 5.9E-38 1.3E-42 340.0 21.8 188 596-797 1-205 (205)
106 PRK11000 maltose/maltodextrin 100.0 7E-38 1.5E-42 366.8 23.9 200 594-808 3-224 (369)
107 cd03259 ABC_Carb_Solutes_like 100.0 4.3E-38 9.3E-43 343.2 20.5 191 595-800 1-213 (213)
108 PRK10744 pstB phosphate transp 100.0 1.1E-37 2.4E-42 350.3 24.2 206 592-808 11-245 (260)
109 PRK11153 metN DL-methionine tr 100.0 6.7E-38 1.5E-42 364.1 23.1 202 595-808 2-231 (343)
110 PRK14250 phosphate ABC transpo 100.0 1.3E-37 2.8E-42 345.8 24.3 201 594-808 3-222 (241)
111 COG3638 ABC-type phosphate/pho 100.0 4.8E-38 1.1E-42 327.7 19.2 200 594-807 3-237 (258)
112 PRK13651 cobalt transporter AT 100.0 1E-37 2.2E-42 356.5 23.7 203 595-808 3-255 (305)
113 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.1E-38 1.8E-42 342.8 21.8 196 595-802 1-218 (220)
114 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.1E-38 1.3E-42 343.3 20.6 190 595-796 1-218 (218)
115 PRK14235 phosphate transporter 100.0 1.6E-37 3.4E-42 350.1 24.4 206 591-807 16-251 (267)
116 cd03256 ABC_PhnC_transporter A 100.0 1E-37 2.2E-42 346.9 22.6 198 595-806 1-233 (241)
117 PRK13636 cbiO cobalt transport 100.0 1.3E-37 2.8E-42 353.4 23.5 201 594-808 5-232 (283)
118 TIGR02315 ABC_phnC phosphonate 100.0 1.3E-37 2.8E-42 346.5 23.0 198 595-806 2-234 (243)
119 cd03294 ABC_Pro_Gly_Bertaine T 100.0 7.2E-38 1.6E-42 353.1 20.7 198 596-808 26-251 (269)
120 cd03258 ABC_MetN_methionine_tr 100.0 1.5E-37 3.2E-42 343.8 22.7 201 595-807 2-230 (233)
121 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.7E-37 3.7E-42 343.8 23.2 199 595-808 2-222 (236)
122 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-37 2.5E-42 341.6 21.3 196 595-805 1-219 (220)
123 PRK13642 cbiO cobalt transport 100.0 2.2E-37 4.7E-42 350.7 24.2 204 594-809 4-231 (277)
124 cd03224 ABC_TM1139_LivF_branch 100.0 1.8E-37 4E-42 340.5 22.9 199 595-807 1-221 (222)
125 PRK13644 cbiO cobalt transport 100.0 2.6E-37 5.7E-42 349.3 24.4 200 595-808 2-225 (274)
126 PRK14237 phosphate transporter 100.0 2.5E-37 5.4E-42 348.5 24.1 207 591-808 17-252 (267)
127 PRK11629 lolD lipoprotein tran 100.0 2.2E-37 4.8E-42 342.3 22.9 196 594-801 5-228 (233)
128 PRK13633 cobalt transporter AT 100.0 3E-37 6.5E-42 350.1 24.5 203 594-808 4-234 (280)
129 cd03268 ABC_BcrA_bacitracin_re 100.0 2.4E-37 5.3E-42 336.0 22.8 191 595-800 1-208 (208)
130 PRK13640 cbiO cobalt transport 100.0 2.6E-37 5.5E-42 350.8 23.8 203 593-808 4-233 (282)
131 PRK14239 phosphate transporter 100.0 2.2E-37 4.8E-42 346.5 22.8 204 594-808 5-237 (252)
132 PRK14274 phosphate ABC transpo 100.0 2.9E-37 6.3E-42 346.8 23.7 205 593-808 11-244 (259)
133 PRK14245 phosphate ABC transpo 100.0 2E-37 4.2E-42 346.4 22.1 204 594-808 3-235 (250)
134 PRK13632 cbiO cobalt transport 100.0 4.2E-37 9.1E-42 347.4 24.9 203 593-808 6-232 (271)
135 PRK11607 potG putrescine trans 100.0 2.6E-37 5.7E-42 361.5 23.9 202 593-809 18-241 (377)
136 PRK14251 phosphate ABC transpo 100.0 2.2E-37 4.7E-42 346.3 22.1 204 594-808 4-236 (251)
137 cd03247 ABCC_cytochrome_bd The 100.0 2.9E-37 6.2E-42 326.9 21.8 166 595-800 1-178 (178)
138 cd03266 ABC_NatA_sodium_export 100.0 2.6E-37 5.7E-42 338.3 22.0 194 595-800 2-218 (218)
139 cd03301 ABC_MalK_N The N-termi 100.0 2.2E-37 4.7E-42 337.7 21.2 191 595-800 1-213 (213)
140 PRK14268 phosphate ABC transpo 100.0 2.8E-37 6.1E-42 346.6 22.4 205 593-808 11-243 (258)
141 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.5E-37 5.4E-42 343.8 21.8 202 595-808 1-226 (242)
142 COG2884 FtsE Predicted ATPase 100.0 1.7E-37 3.6E-42 312.2 18.1 193 595-801 2-220 (223)
143 PRK14248 phosphate ABC transpo 100.0 3.3E-37 7.1E-42 348.0 22.8 205 593-808 20-253 (268)
144 cd03235 ABC_Metallic_Cations A 100.0 2.7E-37 5.9E-42 336.9 21.4 188 597-800 2-213 (213)
145 PRK14236 phosphate transporter 100.0 3.7E-37 8.1E-42 348.0 23.1 206 592-808 23-257 (272)
146 cd03264 ABC_drug_resistance_li 100.0 2.9E-37 6.3E-42 336.2 21.4 190 595-800 1-211 (211)
147 PRK13645 cbiO cobalt transport 100.0 3.6E-37 7.7E-42 351.2 23.1 205 593-808 5-241 (289)
148 PRK14240 phosphate transporter 100.0 4.7E-37 1E-41 343.4 23.7 204 594-808 3-235 (250)
149 TIGR03411 urea_trans_UrtD urea 100.0 4.5E-37 9.8E-42 341.9 23.1 198 595-807 3-231 (242)
150 PRK11247 ssuB aliphatic sulfon 100.0 6.7E-37 1.5E-41 341.9 24.4 196 593-803 11-219 (257)
151 cd03218 ABC_YhbG The ABC trans 100.0 3.9E-37 8.4E-42 340.3 22.3 198 595-807 1-222 (232)
152 PRK13648 cbiO cobalt transport 100.0 5.6E-37 1.2E-41 346.1 23.9 202 594-808 7-232 (269)
153 PRK13649 cbiO cobalt transport 100.0 4.6E-37 1E-41 349.0 23.1 203 595-808 3-235 (280)
154 TIGR02211 LolD_lipo_ex lipopro 100.0 4.3E-37 9.4E-42 337.3 22.1 191 595-797 2-220 (221)
155 PRK13641 cbiO cobalt transport 100.0 6.1E-37 1.3E-41 348.6 24.1 204 594-808 2-235 (287)
156 PRK09493 glnQ glutamine ABC tr 100.0 6.1E-37 1.3E-41 340.3 23.5 199 595-808 2-226 (240)
157 PRK14244 phosphate ABC transpo 100.0 3.3E-37 7.3E-42 344.7 21.5 203 595-808 6-238 (251)
158 PRK10619 histidine/lysine/argi 100.0 5.5E-37 1.2E-41 344.1 23.3 203 592-808 3-242 (257)
159 PRK14270 phosphate ABC transpo 100.0 5.4E-37 1.2E-41 343.0 23.1 204 594-808 4-236 (251)
160 PRK13652 cbiO cobalt transport 100.0 7.7E-37 1.7E-41 346.2 24.5 201 594-808 3-228 (277)
161 PRK14249 phosphate ABC transpo 100.0 6.7E-37 1.4E-41 342.3 23.6 204 594-808 4-236 (251)
162 PRK09536 btuD corrinoid ABC tr 100.0 5.9E-37 1.3E-41 359.6 24.0 200 594-808 3-229 (402)
163 PRK14238 phosphate transporter 100.0 7.1E-37 1.5E-41 345.4 23.6 205 593-808 23-256 (271)
164 PRK13537 nodulation ABC transp 100.0 6.5E-37 1.4E-41 350.7 23.6 201 593-808 6-228 (306)
165 cd03298 ABC_ThiQ_thiamine_tran 100.0 6E-37 1.3E-41 333.7 22.2 189 595-800 1-211 (211)
166 PRK14259 phosphate ABC transpo 100.0 8.6E-37 1.9E-41 344.3 24.1 205 593-808 12-254 (269)
167 cd03292 ABC_FtsE_transporter F 100.0 4.5E-37 9.8E-42 335.5 20.8 188 595-796 1-214 (214)
168 PRK14267 phosphate ABC transpo 100.0 5.3E-37 1.1E-41 343.6 21.8 204 594-808 4-238 (253)
169 PRK11124 artP arginine transpo 100.0 9.5E-37 2.1E-41 339.3 23.7 198 595-807 3-230 (242)
170 cd03269 ABC_putative_ATPase Th 100.0 6.4E-37 1.4E-41 333.2 21.8 191 595-800 1-210 (210)
171 TIGR03415 ABC_choXWV_ATP choli 100.0 6.2E-37 1.3E-41 356.7 23.0 187 610-808 37-255 (382)
172 PRK14247 phosphate ABC transpo 100.0 7.9E-37 1.7E-41 341.6 23.0 204 594-808 3-235 (250)
173 TIGR03410 urea_trans_UrtE urea 100.0 5.9E-37 1.3E-41 338.3 21.6 197 595-805 1-219 (230)
174 PRK10070 glycine betaine trans 100.0 6.3E-37 1.4E-41 359.1 22.9 186 611-808 42-255 (400)
175 TIGR02769 nickel_nikE nickel i 100.0 1E-36 2.2E-41 343.3 23.7 205 595-810 3-243 (265)
176 PRK10771 thiQ thiamine transpo 100.0 1.5E-36 3.3E-41 335.3 24.7 197 595-808 2-220 (232)
177 TIGR03005 ectoine_ehuA ectoine 100.0 7.5E-37 1.6E-41 342.1 22.5 199 595-808 1-237 (252)
178 PRK14253 phosphate ABC transpo 100.0 8.4E-37 1.8E-41 341.2 22.7 203 594-807 3-233 (249)
179 PRK15079 oligopeptide ABC tran 100.0 8.9E-37 1.9E-41 352.0 23.6 206 593-809 7-253 (331)
180 PRK10247 putative ABC transpor 100.0 7.2E-37 1.6E-41 336.2 21.8 197 593-803 6-223 (225)
181 PRK10575 iron-hydroxamate tran 100.0 1.1E-36 2.4E-41 343.0 23.7 200 593-807 10-237 (265)
182 PRK14243 phosphate transporter 100.0 1.1E-36 2.5E-41 342.5 23.7 204 594-808 10-249 (264)
183 PRK14261 phosphate ABC transpo 100.0 1E-36 2.2E-41 341.3 23.0 204 594-808 6-238 (253)
184 PRK11300 livG leucine/isoleuci 100.0 1.2E-36 2.6E-41 341.2 23.6 199 594-807 5-243 (255)
185 PRK13639 cbiO cobalt transport 100.0 1E-36 2.2E-41 344.8 23.3 200 595-808 2-227 (275)
186 PRK14262 phosphate ABC transpo 100.0 8.5E-37 1.8E-41 341.3 22.2 204 594-808 3-235 (250)
187 PRK11831 putative ABC transpor 100.0 1.1E-36 2.3E-41 343.7 23.1 201 593-808 6-234 (269)
188 PRK11264 putative amino-acid A 100.0 1.5E-36 3.2E-41 339.4 24.1 200 594-808 3-234 (250)
189 PRK11231 fecE iron-dicitrate t 100.0 1.3E-36 2.9E-41 340.6 23.7 198 595-807 3-227 (255)
190 PRK10584 putative ABC transpor 100.0 1.2E-36 2.7E-41 335.3 23.0 194 594-799 6-227 (228)
191 TIGR01288 nodI ATP-binding ABC 100.0 1.4E-36 3E-41 348.4 24.1 200 594-808 4-225 (303)
192 PRK14271 phosphate ABC transpo 100.0 1.3E-36 2.8E-41 343.9 23.4 205 593-808 20-252 (276)
193 cd03223 ABCD_peroxisomal_ALDP 100.0 1E-36 2.2E-41 318.6 20.7 162 595-795 1-164 (166)
194 PRK14252 phosphate ABC transpo 100.0 1.7E-36 3.7E-41 341.5 24.0 205 592-807 14-249 (265)
195 TIGR02673 FtsE cell division A 100.0 7.2E-37 1.6E-41 333.8 20.2 187 595-795 2-214 (214)
196 PRK13638 cbiO cobalt transport 100.0 1.5E-36 3.3E-41 343.0 23.3 199 595-808 2-226 (271)
197 cd03225 ABC_cobalt_CbiO_domain 100.0 8.5E-37 1.8E-41 332.5 20.5 187 596-795 1-211 (211)
198 PRK14254 phosphate ABC transpo 100.0 1.5E-36 3.3E-41 344.6 23.4 206 592-808 37-270 (285)
199 PRK14256 phosphate ABC transpo 100.0 1.6E-36 3.5E-41 339.4 23.2 205 593-808 3-237 (252)
200 TIGR00968 3a0106s01 sulfate AB 100.0 1.8E-36 4E-41 335.6 23.3 199 595-808 1-221 (237)
201 PRK11614 livF leucine/isoleuci 100.0 3E-36 6.5E-41 334.2 24.3 204 594-807 5-226 (237)
202 cd03300 ABC_PotA_N PotA is an 100.0 1.2E-36 2.6E-41 336.2 20.7 199 595-808 1-221 (232)
203 cd03257 ABC_NikE_OppD_transpor 100.0 9.9E-37 2.1E-41 336.1 19.9 195 595-800 2-228 (228)
204 PRK10253 iron-enterobactin tra 100.0 2.4E-36 5.2E-41 340.2 23.4 201 592-807 5-233 (265)
205 PRK14266 phosphate ABC transpo 100.0 1.8E-36 4E-41 338.6 22.2 204 594-808 3-235 (250)
206 PRK14264 phosphate ABC transpo 100.0 2.5E-36 5.4E-41 346.2 23.8 205 593-808 44-290 (305)
207 PRK13536 nodulation factor exp 100.0 2.3E-36 5E-41 349.6 23.3 201 593-808 40-262 (340)
208 PRK09984 phosphonate/organopho 100.0 3.4E-36 7.4E-41 338.7 24.0 197 594-805 4-240 (262)
209 TIGR03873 F420-0_ABC_ATP propo 100.0 3E-36 6.5E-41 337.9 23.4 198 595-807 2-226 (256)
210 PRK14263 phosphate ABC transpo 100.0 3.2E-36 7E-41 338.0 23.6 205 593-808 7-246 (261)
211 PRK13548 hmuV hemin importer A 100.0 5.3E-36 1.1E-40 336.0 25.3 198 595-807 3-230 (258)
212 TIGR03522 GldA_ABC_ATP gliding 100.0 3.1E-36 6.6E-41 345.0 23.5 199 595-808 3-222 (301)
213 PRK10895 lipopolysaccharide AB 100.0 4.2E-36 9.1E-41 333.9 23.9 199 594-807 3-226 (241)
214 TIGR01277 thiQ thiamine ABC tr 100.0 3.4E-36 7.4E-41 328.2 22.7 189 596-801 2-212 (213)
215 PRK14275 phosphate ABC transpo 100.0 2.8E-36 6E-41 342.9 22.6 206 592-808 37-271 (286)
216 cd03299 ABC_ModC_like Archeal 100.0 3.4E-36 7.3E-41 333.1 22.4 198 595-808 1-220 (235)
217 PRK10908 cell division protein 100.0 3.4E-36 7.5E-41 330.3 22.2 190 595-798 2-217 (222)
218 PRK11308 dppF dipeptide transp 100.0 4.6E-36 1E-40 345.9 24.2 204 594-808 5-245 (327)
219 TIGR01978 sufC FeS assembly AT 100.0 3.2E-36 7E-41 335.3 22.2 198 595-806 1-233 (243)
220 cd03246 ABCC_Protease_Secretio 100.0 2.7E-36 5.8E-41 317.9 20.3 159 595-796 1-173 (173)
221 PRK14260 phosphate ABC transpo 100.0 4.2E-36 9.1E-41 337.3 22.8 205 593-808 6-244 (259)
222 PRK11144 modC molybdate transp 100.0 5.2E-36 1.1E-40 349.5 24.1 197 595-809 2-220 (352)
223 TIGR03740 galliderm_ABC gallid 100.0 4.5E-36 9.8E-41 329.6 22.1 195 595-804 1-210 (223)
224 cd03262 ABC_HisP_GlnQ_permease 100.0 2.7E-36 5.9E-41 329.0 20.2 187 595-796 1-213 (213)
225 PRK10418 nikD nickel transport 100.0 8.5E-36 1.8E-40 333.8 24.5 202 594-808 4-231 (254)
226 PRK11248 tauB taurine transpor 100.0 5.2E-36 1.1E-40 335.1 22.6 193 595-802 2-215 (255)
227 PRK09544 znuC high-affinity zi 100.0 1.2E-35 2.5E-40 331.2 25.3 206 594-816 4-217 (251)
228 PRK14272 phosphate ABC transpo 100.0 5.8E-36 1.3E-40 335.1 22.7 204 594-808 4-237 (252)
229 PRK15112 antimicrobial peptide 100.0 9.2E-36 2E-40 335.7 24.4 213 594-817 4-251 (267)
230 PRK14255 phosphate ABC transpo 100.0 5.4E-36 1.2E-40 335.3 22.3 204 594-808 5-237 (252)
231 PRK14265 phosphate ABC transpo 100.0 1E-35 2.3E-40 336.2 24.7 205 593-808 19-259 (274)
232 PRK14241 phosphate transporter 100.0 5.6E-36 1.2E-40 336.2 22.3 204 594-808 4-243 (258)
233 TIGR01188 drrA daunorubicin re 100.0 4.2E-36 9.2E-41 344.2 21.5 187 610-808 6-214 (302)
234 PRK11022 dppD dipeptide transp 100.0 6.2E-36 1.4E-40 345.0 22.7 206 595-809 4-245 (326)
235 PRK11701 phnK phosphonate C-P 100.0 9.3E-36 2E-40 334.4 22.5 201 594-808 6-242 (258)
236 COG1131 CcmA ABC-type multidru 100.0 1.3E-35 2.7E-40 336.8 23.6 201 594-808 4-227 (293)
237 TIGR02982 heterocyst_DevA ABC 100.0 7.2E-36 1.6E-40 327.3 20.5 190 595-796 2-219 (220)
238 PRK09473 oppD oligopeptide tra 100.0 1.5E-35 3.2E-40 342.2 23.5 213 593-814 11-259 (330)
239 cd03234 ABCG_White The White s 100.0 6.7E-36 1.5E-40 328.9 19.7 199 595-800 4-226 (226)
240 PRK14246 phosphate ABC transpo 100.0 1.6E-35 3.5E-40 331.6 23.1 205 593-808 9-242 (257)
241 PRK10419 nikE nickel transport 100.0 1.3E-35 2.9E-40 334.4 22.6 209 594-813 3-247 (268)
242 PRK15093 antimicrobial peptide 100.0 1.5E-35 3.3E-40 342.9 23.1 212 594-814 3-256 (330)
243 PRK13547 hmuV hemin importer A 100.0 2.2E-35 4.7E-40 332.4 23.5 198 595-807 2-244 (272)
244 PRK14258 phosphate ABC transpo 100.0 1.9E-35 4.2E-40 332.1 23.0 205 593-808 6-246 (261)
245 PRK15056 manganese/iron transp 100.0 2.7E-35 5.8E-40 332.9 23.6 199 594-807 6-230 (272)
246 PRK13546 teichoic acids export 100.0 6.4E-35 1.4E-39 327.0 25.6 193 610-814 37-239 (264)
247 cd03233 ABC_PDR_domain1 The pl 100.0 2.4E-35 5.1E-40 318.5 21.3 179 594-800 3-202 (202)
248 TIGR02142 modC_ABC molybdenum 100.0 3.8E-35 8.1E-40 342.9 23.4 194 599-809 4-223 (354)
249 COG0410 LivF ABC-type branched 100.0 2.9E-35 6.2E-40 307.8 20.0 207 594-809 3-228 (237)
250 cd03213 ABCG_EPDR ABCG transpo 100.0 3.5E-35 7.6E-40 315.1 20.8 173 594-800 3-194 (194)
251 cd03230 ABC_DR_subfamily_A Thi 100.0 4E-35 8.6E-40 309.0 20.5 158 595-796 1-173 (173)
252 cd03232 ABC_PDR_domain2 The pl 100.0 3.5E-35 7.6E-40 314.7 20.2 173 594-800 3-192 (192)
253 cd03297 ABC_ModC_molybdenum_tr 100.0 5E-35 1.1E-39 319.3 21.1 184 599-800 5-214 (214)
254 cd03228 ABCC_MRP_Like The MRP 100.0 6.6E-35 1.4E-39 306.7 19.9 158 595-795 1-171 (171)
255 PRK13545 tagH teichoic acids e 100.0 2.5E-34 5.3E-39 339.3 26.4 210 593-814 20-239 (549)
256 TIGR02323 CP_lyasePhnK phospho 100.0 1.7E-34 3.6E-39 323.4 23.0 201 594-808 3-239 (253)
257 COG4175 ProV ABC-type proline/ 100.0 6.1E-35 1.3E-39 314.0 18.3 187 612-809 43-256 (386)
258 cd03229 ABC_Class3 This class 100.0 1.1E-34 2.5E-39 307.0 20.1 159 595-795 1-178 (178)
259 TIGR02770 nickel_nikD nickel i 100.0 9.4E-35 2E-39 320.6 20.3 188 612-808 1-216 (230)
260 cd03215 ABC_Carb_Monos_II This 100.0 9E-35 1.9E-39 308.9 19.0 159 594-796 4-182 (182)
261 TIGR01184 ntrCD nitrate transp 100.0 9.5E-35 2.1E-39 320.3 19.8 181 613-805 1-202 (230)
262 CHL00131 ycf16 sulfate ABC tra 100.0 3E-34 6.5E-39 321.2 24.1 198 594-805 7-239 (252)
263 TIGR00955 3a01204 The Eye Pigm 100.0 3.9E-35 8.4E-40 366.7 18.8 191 609-807 37-256 (617)
264 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-34 2.4E-39 314.7 19.2 180 597-791 1-206 (206)
265 PRK15439 autoinducer 2 ABC tra 100.0 3.1E-34 6.8E-39 352.0 24.5 199 594-807 11-229 (510)
266 PRK09580 sufC cysteine desulfu 100.0 7.2E-34 1.6E-38 317.4 23.0 198 595-805 2-233 (248)
267 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.1E-34 1.1E-38 307.7 20.8 172 595-806 1-192 (200)
268 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.4E-34 9.5E-39 313.7 20.5 191 595-800 23-224 (224)
269 PRK03695 vitamin B12-transport 100.0 7.2E-34 1.6E-38 316.9 22.5 192 596-807 2-222 (248)
270 COG4619 ABC-type uncharacteriz 100.0 1.1E-34 2.3E-39 285.3 13.5 179 609-798 15-214 (223)
271 PRK10261 glutathione transport 100.0 4.4E-34 9.5E-39 357.6 22.2 207 593-808 11-259 (623)
272 PRK13549 xylose transporter AT 100.0 4.7E-34 1E-38 350.7 21.9 198 594-806 5-231 (506)
273 KOG0060 Long-chain acyl-CoA tr 100.0 2E-31 4.4E-36 306.5 41.9 446 339-793 143-641 (659)
274 cd03267 ABC_NatA_like Similar 100.0 7E-34 1.5E-38 314.7 20.6 179 610-800 34-236 (236)
275 PRK10261 glutathione transport 100.0 8.2E-34 1.8E-38 355.2 23.7 204 593-808 312-554 (623)
276 PLN03211 ABC transporter G-25; 100.0 1.7E-33 3.7E-38 351.5 26.2 191 609-807 80-296 (659)
277 COG4555 NatA ABC-type Na+ tran 100.0 4.5E-34 9.8E-39 289.7 16.9 200 595-808 2-223 (245)
278 PRK09700 D-allose transporter 100.0 5.6E-34 1.2E-38 350.5 21.4 199 594-807 5-234 (510)
279 PRK13540 cytochrome c biogenes 100.0 1.1E-33 2.3E-38 305.4 21.0 181 595-790 2-198 (200)
280 PRK10762 D-ribose transporter 100.0 8.3E-34 1.8E-38 348.0 21.9 198 594-806 4-229 (501)
281 COG1123 ATPase components of v 100.0 1.7E-33 3.7E-38 330.9 23.1 213 593-816 279-529 (539)
282 cd03231 ABC_CcmA_heme_exporter 100.0 2.2E-33 4.8E-38 303.1 21.9 182 595-791 1-198 (201)
283 PRK13543 cytochrome c biogenes 100.0 2.5E-33 5.3E-38 305.8 22.4 186 593-793 10-212 (214)
284 cd03214 ABC_Iron-Siderophores_ 100.0 8.6E-34 1.9E-38 300.8 17.5 176 596-800 1-180 (180)
285 PRK10982 galactose/methyl gala 100.0 1.3E-33 2.8E-38 345.7 21.6 195 597-806 1-222 (491)
286 PRK13539 cytochrome c biogenes 100.0 3.5E-33 7.6E-38 302.9 22.4 183 595-793 3-200 (207)
287 PRK11288 araG L-arabinose tran 100.0 2E-33 4.4E-38 344.6 23.0 193 594-801 4-223 (501)
288 PRK13538 cytochrome c biogenes 100.0 2.8E-33 6E-38 303.1 21.2 182 595-791 2-202 (204)
289 cd03216 ABC_Carb_Monos_I This 100.0 2.6E-33 5.6E-38 292.0 19.9 159 595-798 1-162 (163)
290 PRK13541 cytochrome c biogenes 100.0 3E-33 6.6E-38 300.6 20.7 179 595-789 2-193 (195)
291 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.1E-33 6.8E-38 310.3 21.0 192 602-807 1-207 (246)
292 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-33 5.4E-38 344.2 22.1 197 595-805 2-228 (500)
293 TIGR03771 anch_rpt_ABC anchore 100.0 2E-33 4.4E-38 308.3 19.1 178 618-808 1-202 (223)
294 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-33 6.7E-38 344.7 23.0 208 593-807 278-517 (520)
295 COG1137 YhbG ABC-type (unclass 100.0 2.5E-34 5.5E-39 291.2 10.9 206 594-808 4-229 (243)
296 TIGR02324 CP_lyasePhnL phospho 100.0 3.8E-33 8.2E-38 306.7 20.2 186 595-791 2-222 (224)
297 PRK10938 putative molybdenum t 100.0 4.1E-33 8.9E-38 341.4 22.4 199 594-808 3-225 (490)
298 PRK15134 microcin C ABC transp 100.0 4.2E-33 9.1E-38 344.1 22.6 206 594-808 5-247 (529)
299 PRK15134 microcin C ABC transp 100.0 3.4E-33 7.4E-38 344.8 21.8 203 594-808 275-516 (529)
300 TIGR03269 met_CoM_red_A2 methy 100.0 4.4E-33 9.6E-38 343.4 22.7 198 595-807 1-258 (520)
301 PRK11819 putative ABC transpor 100.0 6E-33 1.3E-37 343.9 23.3 207 594-808 6-251 (556)
302 TIGR01189 ccmA heme ABC export 100.0 6.5E-33 1.4E-37 298.8 20.3 179 595-789 1-196 (198)
303 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7E-33 1.5E-37 343.3 23.4 207 594-808 4-249 (552)
304 COG4181 Predicted ABC-type tra 100.0 4.1E-33 8.9E-38 274.9 16.8 195 594-799 6-227 (228)
305 PRK13549 xylose transporter AT 100.0 2.6E-33 5.7E-38 344.0 19.0 202 594-806 259-493 (506)
306 PRK15064 ABC transporter ATP-b 100.0 8.3E-33 1.8E-37 341.5 23.5 197 595-807 2-242 (530)
307 COG4525 TauB ABC-type taurine 100.0 2.1E-33 4.6E-38 282.6 14.7 195 595-802 4-219 (259)
308 COG1123 ATPase components of v 100.0 9.2E-33 2E-37 324.7 22.5 206 594-809 5-246 (539)
309 PRK15177 Vi polysaccharide exp 100.0 7.9E-33 1.7E-37 301.1 19.6 186 612-808 2-193 (213)
310 COG4559 ABC-type hemin transpo 100.0 8.4E-33 1.8E-37 282.6 18.1 200 595-808 2-231 (259)
311 PRK15064 ABC transporter ATP-b 100.0 1.7E-32 3.7E-37 338.7 24.6 201 593-809 318-527 (530)
312 COG4148 ModC ABC-type molybdat 100.0 4.1E-33 9E-38 295.0 15.7 183 615-809 16-220 (352)
313 COG4598 HisP ABC-type histidin 100.0 5E-33 1.1E-37 275.9 14.8 201 593-808 5-242 (256)
314 COG0444 DppD ABC-type dipeptid 100.0 2.4E-32 5.2E-37 300.5 21.6 211 595-817 2-255 (316)
315 TIGR01166 cbiO cobalt transpor 100.0 9.4E-33 2E-37 295.7 17.6 160 610-781 5-189 (190)
316 TIGR01257 rim_protein retinal- 100.0 2.5E-32 5.5E-37 363.9 25.0 203 593-808 927-1150(2272)
317 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.2E-32 7E-37 277.6 18.9 141 595-795 1-144 (144)
318 PRK10535 macrolide transporter 100.0 5.7E-32 1.2E-36 339.7 23.4 201 594-806 4-231 (648)
319 COG0411 LivG ABC-type branched 100.0 1.8E-32 4E-37 288.9 15.4 200 595-809 5-241 (250)
320 TIGR00956 3a01205 Pleiotropic 100.0 3.8E-32 8.2E-37 363.8 22.5 203 594-804 759-990 (1394)
321 COG4161 ArtP ABC-type arginine 100.0 2.7E-32 5.9E-37 265.9 15.2 199 594-807 2-230 (242)
322 COG4608 AppF ABC-type oligopep 100.0 4E-32 8.6E-37 292.9 17.9 187 594-809 4-201 (268)
323 TIGR01187 potA spermidine/putr 100.0 3.1E-32 6.7E-37 314.7 18.4 169 628-808 1-191 (325)
324 TIGR01257 rim_protein retinal- 100.0 6.7E-32 1.5E-36 359.9 23.8 205 592-809 1935-2161(2272)
325 PRK09700 D-allose transporter 100.0 3.7E-32 7.9E-37 334.4 19.4 193 594-802 265-493 (510)
326 TIGR02633 xylG D-xylose ABC tr 100.0 3.3E-32 7.2E-37 334.2 18.6 200 594-804 257-489 (500)
327 COG1129 MglA ABC-type sugar tr 100.0 2.8E-31 6.1E-36 310.4 22.9 195 593-802 7-229 (500)
328 PRK10762 D-ribose transporter 100.0 7.2E-32 1.6E-36 330.9 18.8 193 594-805 257-482 (501)
329 PRK11288 araG L-arabinose tran 100.0 1.3E-31 2.7E-36 328.8 20.2 195 594-806 257-484 (501)
330 COG4172 ABC-type uncharacteriz 100.0 3.7E-31 8E-36 292.1 21.4 208 593-813 275-523 (534)
331 PRK11819 putative ABC transpor 100.0 5.3E-31 1.1E-35 326.6 24.4 200 593-808 323-534 (556)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.8E-31 1.3E-35 326.2 24.3 199 593-807 321-531 (552)
333 PLN03073 ABC transporter F fam 100.0 6.9E-31 1.5E-35 329.7 24.8 198 593-806 507-713 (718)
334 TIGR00956 3a01205 Pleiotropic 100.0 3.6E-30 7.9E-35 344.8 32.2 189 610-806 74-299 (1394)
335 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.6E-31 5.7E-36 296.1 17.1 187 598-800 4-220 (255)
336 cd03222 ABC_RNaseL_inhibitor T 100.0 3.8E-31 8.2E-36 277.4 16.8 151 598-804 4-160 (177)
337 PRK10636 putative ABC transpor 100.0 1.1E-30 2.3E-35 327.4 24.0 198 592-806 310-516 (638)
338 PRK15439 autoinducer 2 ABC tra 100.0 3E-31 6.6E-36 325.7 18.7 195 594-807 268-492 (510)
339 COG4604 CeuD ABC-type enteroch 100.0 6.3E-32 1.4E-36 272.7 9.5 199 595-808 2-226 (252)
340 PRK10938 putative molybdenum t 100.0 5.7E-31 1.2E-35 322.5 18.7 193 593-799 259-484 (490)
341 PRK13409 putative ATPase RIL; 100.0 1.4E-30 2.9E-35 321.7 21.8 192 593-801 339-536 (590)
342 cd03238 ABC_UvrA The excision 100.0 1.6E-30 3.4E-35 272.4 17.9 149 609-796 7-166 (176)
343 PRK11147 ABC transporter ATPas 100.0 3.3E-30 7.1E-35 323.8 24.1 199 593-807 318-528 (635)
344 PRK10636 putative ABC transpor 100.0 4.8E-30 1E-34 321.5 24.3 197 595-807 2-236 (638)
345 PRK10982 galactose/methyl gala 100.0 2.5E-30 5.4E-35 316.8 19.4 196 593-804 249-477 (491)
346 COG3845 ABC-type uncharacteriz 100.0 3.4E-30 7.3E-35 294.4 19.0 192 593-799 3-221 (501)
347 PLN03140 ABC transporter G fam 100.0 8.1E-30 1.7E-34 339.9 25.3 203 594-804 867-1107(1470)
348 PRK11147 ABC transporter ATPas 100.0 2.2E-29 4.8E-34 316.3 23.6 196 594-808 3-244 (635)
349 COG1134 TagH ABC-type polysacc 100.0 3.7E-29 8.1E-34 264.4 19.6 188 609-808 39-237 (249)
350 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.3E-29 9.2E-34 259.0 18.5 141 597-795 2-157 (157)
351 COG4136 ABC-type uncharacteriz 100.0 6.8E-29 1.5E-33 239.7 15.9 184 594-791 2-207 (213)
352 COG1101 PhnK ABC-type uncharac 100.0 2.3E-29 5E-34 258.0 13.4 189 609-799 18-230 (263)
353 COG0488 Uup ATPase components 100.0 1.3E-28 2.8E-33 296.2 21.7 207 594-809 3-242 (530)
354 COG4167 SapF ABC-type antimicr 100.0 1.2E-28 2.7E-33 245.2 16.4 189 611-809 27-241 (267)
355 COG4152 ABC-type uncharacteriz 100.0 1.4E-28 3.1E-33 256.5 16.0 206 594-810 2-222 (300)
356 PLN03140 ABC transporter G fam 100.0 7.4E-29 1.6E-33 330.7 17.8 197 610-807 178-427 (1470)
357 PRK13409 putative ATPase RIL; 100.0 1.3E-28 2.9E-33 304.0 16.4 180 598-794 77-287 (590)
358 COG1119 ModF ABC-type molybden 100.0 6.5E-28 1.4E-32 254.4 17.7 195 592-801 29-256 (257)
359 KOG0061 Transporter, ABC super 100.0 7.2E-28 1.6E-32 298.0 19.4 207 593-807 24-260 (613)
360 COG4172 ABC-type uncharacteriz 99.9 3.1E-27 6.7E-32 261.2 18.0 214 593-815 5-256 (534)
361 PLN03073 ABC transporter F fam 99.9 7E-27 1.5E-31 293.6 22.7 205 593-808 176-432 (718)
362 cd03270 ABC_UvrA_I The excisio 99.9 4.1E-27 8.8E-32 258.5 18.0 179 609-800 7-226 (226)
363 COG4674 Uncharacterized ABC-ty 99.9 2.9E-27 6.3E-32 238.7 14.0 199 594-808 5-236 (249)
364 PF00005 ABC_tran: ABC transpo 99.9 1.6E-27 3.5E-32 241.2 12.0 123 613-748 1-137 (137)
365 KOG0064 Peroxisomal long-chain 99.9 7.7E-23 1.7E-27 232.3 48.6 488 284-784 125-674 (728)
366 COG0488 Uup ATPase components 99.9 8.9E-26 1.9E-30 271.7 26.3 201 592-808 319-526 (530)
367 cd03271 ABC_UvrA_II The excisi 99.9 1.8E-26 3.9E-31 255.9 16.8 181 611-802 9-261 (261)
368 COG0396 sufC Cysteine desulfur 99.9 1.1E-24 2.3E-29 227.3 20.6 201 594-807 3-233 (251)
369 COG4133 CcmA ABC-type transpor 99.9 2.9E-25 6.2E-30 224.5 13.4 163 609-783 14-194 (209)
370 COG4586 ABC-type uncharacteriz 99.9 1.4E-25 3E-30 237.9 9.1 190 610-813 37-252 (325)
371 COG4107 PhnK ABC-type phosphon 99.9 1.5E-24 3.2E-29 214.6 15.6 214 594-816 6-251 (258)
372 cd03278 ABC_SMC_barmotin Barmo 99.9 5.8E-25 1.3E-29 236.0 13.8 153 614-792 14-189 (197)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.2E-23 2.6E-28 234.3 14.0 177 610-792 15-234 (243)
374 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.6E-23 3.4E-28 228.3 13.9 180 594-796 5-211 (213)
375 COG4778 PhnL ABC-type phosphon 99.9 1.6E-23 3.4E-28 206.9 10.4 187 595-792 5-226 (235)
376 KOG0059 Lipid exporter ABCA1 a 99.9 5E-23 1.1E-27 265.8 17.2 205 593-811 563-791 (885)
377 KOG0058 Peptide exporter, ABC 99.9 7.5E-21 1.6E-25 227.1 33.3 282 937-1230 190-482 (716)
378 PRK00349 uvrA excinuclease ABC 99.9 1.2E-22 2.6E-27 258.6 17.6 97 713-810 824-930 (943)
379 cd03240 ABC_Rad50 The catalyti 99.9 9.5E-23 2.1E-27 220.2 14.0 153 616-793 16-197 (204)
380 KOG0927 Predicted transporter 99.9 4.4E-23 9.6E-28 236.6 10.8 199 592-805 387-594 (614)
381 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.5E-22 5.4E-27 224.6 13.1 172 623-795 25-247 (251)
382 TIGR00958 3a01208 Conjugate Tr 99.9 6.4E-20 1.4E-24 234.0 36.5 279 938-1226 204-489 (711)
383 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.2E-22 4.8E-27 224.3 10.8 170 621-792 21-232 (247)
384 PRK00635 excinuclease ABC subu 99.9 2.8E-21 6.1E-26 255.0 20.8 199 594-809 600-908 (1809)
385 TIGR00630 uvra excinuclease AB 99.9 5E-21 1.1E-25 243.5 18.7 92 713-805 822-923 (924)
386 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.5E-22 1.2E-26 215.3 7.5 184 594-792 5-203 (212)
387 KOG0065 Pleiotropic drug resis 99.8 1E-21 2.2E-26 246.3 9.4 190 608-805 802-1019(1391)
388 COG1129 MglA ABC-type sugar tr 99.8 1.3E-20 2.7E-25 221.3 17.3 196 594-801 263-484 (500)
389 TIGR02868 CydC thiol reductant 99.8 3.2E-18 6.9E-23 212.3 38.4 282 946-1228 64-347 (529)
390 TIGR01193 bacteriocin_ABC ABC- 99.8 5.9E-18 1.3E-22 216.8 37.5 278 941-1228 202-486 (708)
391 PRK10790 putative multidrug tr 99.8 9E-18 1.9E-22 211.0 38.1 278 941-1228 71-353 (592)
392 TIGR02203 MsbA_lipidA lipid A 99.8 9.8E-18 2.1E-22 210.1 38.2 286 937-1227 56-342 (571)
393 cd03239 ABC_SMC_head The struc 99.8 2.1E-20 4.6E-25 197.2 11.5 150 617-793 16-172 (178)
394 PF00664 ABC_membrane: ABC tra 99.8 4.7E-17 1E-21 181.6 38.1 270 280-549 2-275 (275)
395 KOG0927 Predicted transporter 99.8 1.6E-19 3.4E-24 207.7 16.3 208 592-809 73-311 (614)
396 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 3.2E-17 6.8E-22 210.3 38.8 288 938-1228 197-490 (710)
397 cd03276 ABC_SMC6_euk Eukaryoti 99.8 2.4E-19 5.3E-24 192.7 15.2 157 613-795 12-192 (198)
398 COG4138 BtuD ABC-type cobalami 99.8 1.6E-20 3.6E-25 186.4 4.9 184 612-808 14-222 (248)
399 KOG0066 eIF2-interacting prote 99.8 3.1E-19 6.7E-24 198.1 15.1 197 593-804 585-788 (807)
400 TIGR02857 CydD thiol reductant 99.8 6.8E-17 1.5E-21 200.4 38.0 282 937-1227 46-332 (529)
401 COG3845 ABC-type uncharacteriz 99.8 9E-19 2E-23 201.2 19.1 205 592-804 255-489 (501)
402 TIGR01846 type_I_sec_HlyB type 99.8 6E-17 1.3E-21 206.9 38.0 279 939-1228 183-468 (694)
403 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.1E-16 2.4E-21 204.4 38.2 279 938-1228 179-464 (686)
404 TIGR02204 MsbA_rel ABC transpo 99.8 1.3E-16 2.9E-21 200.0 38.1 284 938-1227 61-349 (576)
405 KOG0062 ATPase component of AB 99.8 3.1E-19 6.6E-24 204.3 12.7 192 593-798 361-559 (582)
406 PRK11174 cysteine/glutathione 99.8 1.6E-16 3.4E-21 199.7 37.2 288 938-1228 66-362 (588)
407 TIGR03375 type_I_sec_LssB type 99.8 1.9E-16 4.1E-21 202.5 38.0 276 941-1227 193-475 (694)
408 PRK11160 cysteine/glutathione 99.8 2.7E-16 5.9E-21 196.4 38.3 283 941-1227 66-350 (574)
409 PRK11176 lipid transporter ATP 99.8 2.5E-16 5.4E-21 197.8 37.8 277 943-1228 73-354 (582)
410 KOG0062 ATPase component of AB 99.8 1.9E-19 4.2E-24 205.9 8.6 199 592-809 78-287 (582)
411 TIGR01192 chvA glucan exporter 99.8 3.2E-16 7E-21 196.0 38.1 268 954-1227 75-346 (585)
412 COG2274 SunT ABC-type bacterio 99.8 5.4E-16 1.2E-20 193.3 38.0 280 941-1230 200-486 (709)
413 TIGR01194 cyc_pep_trnsptr cycl 99.8 6.7E-16 1.4E-20 192.1 37.4 284 940-1227 58-349 (555)
414 COG1245 Predicted ATPase, RNas 99.8 2.9E-18 6.2E-23 193.1 14.6 180 599-793 340-531 (591)
415 PRK13657 cyclic beta-1,2-gluca 99.8 1.5E-15 3.1E-20 190.9 38.9 318 906-1227 25-346 (588)
416 PRK10789 putative multidrug tr 99.8 6.6E-16 1.4E-20 192.8 34.8 284 937-1227 38-325 (569)
417 COG1132 MdlB ABC-type multidru 99.8 1.3E-15 2.9E-20 190.4 36.9 283 938-1227 55-340 (567)
418 PF00664 ABC_membrane: ABC tra 99.7 3.6E-16 7.9E-21 174.5 27.8 216 951-1166 57-274 (275)
419 cd03280 ABC_MutS2 MutS2 homolo 99.7 3.8E-18 8.3E-23 184.2 10.5 145 613-799 17-171 (200)
420 cd03277 ABC_SMC5_euk Eukaryoti 99.7 4.5E-17 9.8E-22 177.0 15.9 170 614-795 15-211 (213)
421 cd01128 rho_factor Transcripti 99.7 1.2E-17 2.5E-22 184.5 10.7 189 617-817 10-227 (249)
422 KOG2355 Predicted ABC-type tra 99.7 9.4E-17 2E-21 163.7 16.1 201 591-807 10-237 (291)
423 COG0178 UvrA Excinuclease ATPa 99.7 7.1E-17 1.5E-21 193.5 17.6 100 712-812 815-924 (935)
424 PRK00635 excinuclease ABC subu 99.7 1E-16 2.3E-21 212.3 18.2 101 707-809 1688-1798(1809)
425 KOG0065 Pleiotropic drug resis 99.7 3.8E-17 8.3E-22 205.6 12.6 195 610-807 128-351 (1391)
426 cd03241 ABC_RecN RecN ATPase i 99.7 1.9E-16 4E-21 179.6 15.3 76 719-795 170-249 (276)
427 PRK10522 multidrug transporter 99.7 7E-14 1.5E-18 174.0 37.6 271 946-1227 59-334 (547)
428 COG2401 ABC-type ATPase fused 99.7 3E-16 6.6E-21 174.7 14.2 177 610-797 396-588 (593)
429 cd03227 ABC_Class2 ABC-type Cl 99.7 1.8E-16 3.8E-21 165.3 11.4 133 617-793 15-155 (162)
430 TIGR01842 type_I_sec_PrtD type 99.6 2.8E-13 6E-18 168.7 37.0 277 937-1227 48-328 (544)
431 COG1245 Predicted ATPase, RNas 99.6 5E-16 1.1E-20 175.3 11.1 177 599-792 79-287 (591)
432 TIGR00954 3a01203 Peroxysomal 99.6 1.7E-13 3.8E-18 173.1 31.4 324 902-1227 98-463 (659)
433 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1E-15 2.2E-20 167.3 7.1 153 610-801 17-175 (222)
434 cd03242 ABC_RecF RecF is a rec 99.6 1.2E-14 2.6E-19 164.3 15.8 176 613-796 12-269 (270)
435 COG4170 SapD ABC-type antimicr 99.6 8.3E-15 1.8E-19 149.8 11.5 200 597-809 6-250 (330)
436 cd03243 ABC_MutS_homologs The 99.6 2.8E-15 6.1E-20 162.1 5.6 149 616-802 22-174 (202)
437 cd03283 ABC_MutS-like MutS-lik 99.5 1.3E-14 2.9E-19 156.0 8.4 135 610-785 14-154 (199)
438 TIGR00630 uvra excinuclease AB 99.5 3.4E-14 7.4E-19 181.5 13.5 95 713-808 481-584 (924)
439 PRK00349 uvrA excinuclease ABC 99.5 3.5E-14 7.5E-19 181.8 12.9 135 668-808 433-586 (943)
440 cd03282 ABC_MSH4_euk MutS4 hom 99.4 5.5E-13 1.2E-17 143.8 12.0 141 609-785 15-157 (204)
441 PF02463 SMC_N: RecF/RecN/SMC 99.4 8.6E-13 1.9E-17 144.8 12.1 159 614-791 16-211 (220)
442 TIGR00606 rad50 rad50. This fa 99.4 8.5E-13 1.8E-17 178.7 12.9 121 665-791 1147-1288(1311)
443 KOG0066 eIF2-interacting prote 99.4 1E-12 2.3E-17 146.8 10.1 197 594-805 264-497 (807)
444 cd00820 PEPCK_HprK Phosphoenol 99.4 6.3E-13 1.4E-17 126.3 7.1 63 610-680 2-77 (107)
445 cd03284 ABC_MutS1 MutS1 homolo 99.4 1.5E-12 3.2E-17 142.0 9.7 149 610-805 18-179 (216)
446 TIGR02858 spore_III_AA stage I 99.3 3.9E-12 8.5E-17 142.3 10.0 140 624-806 112-268 (270)
447 KOG0063 RNAse L inhibitor, ABC 99.3 1E-11 2.2E-16 139.6 11.9 195 600-808 341-549 (592)
448 COG4987 CydC ABC-type transpor 99.3 7.3E-09 1.6E-13 121.2 34.3 262 962-1229 85-350 (573)
449 PRK00064 recF recombination pr 99.3 6.4E-11 1.4E-15 139.2 17.5 76 718-796 272-359 (361)
450 PHA02562 46 endonuclease subun 99.3 8.7E-12 1.9E-16 156.3 9.1 107 688-797 432-556 (562)
451 COG4988 CydD ABC-type transpor 99.2 2.1E-08 4.6E-13 119.3 34.8 285 937-1228 42-333 (559)
452 cd03281 ABC_MSH5_euk MutS5 hom 99.2 7.8E-11 1.7E-15 128.3 11.8 134 611-785 17-160 (213)
453 TIGR01069 mutS2 MutS2 family p 99.2 6E-11 1.3E-15 150.7 11.9 145 594-781 295-447 (771)
454 smart00534 MUTSac ATPase domai 99.2 1.4E-11 3E-16 131.4 4.8 131 626-796 2-139 (185)
455 KOG0056 Heavy metal exporter H 99.1 7.5E-09 1.6E-13 118.2 21.7 287 936-1230 254-552 (790)
456 PRK13695 putative NTPase; Prov 99.1 2.5E-10 5.4E-15 120.6 7.9 152 625-799 2-156 (174)
457 cd03287 ABC_MSH3_euk MutS3 hom 99.1 4.2E-10 9.1E-15 122.8 9.6 136 610-783 18-158 (222)
458 TIGR00634 recN DNA repair prot 99.0 3.1E-10 6.7E-15 141.2 8.8 78 717-795 438-519 (563)
459 PRK10869 recombination and rep 99.0 7.5E-10 1.6E-14 136.6 9.7 77 718-795 429-509 (553)
460 PRK07721 fliI flagellum-specif 99.0 6.5E-09 1.4E-13 123.8 16.5 176 610-804 146-340 (438)
461 PRK00409 recombination and DNA 99.0 3.7E-09 8E-14 135.0 15.4 149 612-797 317-468 (782)
462 KOG0063 RNAse L inhibitor, ABC 98.9 7.5E-10 1.6E-14 124.8 5.6 158 621-792 98-287 (592)
463 PTZ00132 GTP-binding nuclear p 98.9 7E-10 1.5E-14 121.3 5.1 42 723-765 156-202 (215)
464 COG0178 UvrA Excinuclease ATPa 98.8 1.2E-08 2.7E-13 123.8 12.0 107 701-809 464-579 (935)
465 PRK08533 flagellar accessory p 98.8 3.1E-08 6.7E-13 109.3 14.0 144 620-792 21-184 (230)
466 TIGR02788 VirB11 P-type DNA tr 98.8 9.2E-09 2E-13 118.6 7.8 143 616-806 137-280 (308)
467 COG4615 PvdE ABC-type sideroph 98.8 2E-05 4.3E-10 89.2 33.3 265 941-1228 54-335 (546)
468 cd01124 KaiC KaiC is a circadi 98.8 4.9E-08 1.1E-12 104.1 12.4 141 626-792 2-163 (187)
469 PRK01156 chromosome segregatio 98.8 1.3E-08 2.8E-13 134.5 9.4 76 716-792 798-883 (895)
470 PRK13830 conjugal transfer pro 98.7 9.1E-08 2E-12 123.7 13.2 68 734-802 649-728 (818)
471 PRK03918 chromosome segregatio 98.7 3.1E-08 6.8E-13 130.9 9.2 75 717-792 786-867 (880)
472 cd03286 ABC_MSH6_euk MutS6 hom 98.7 4.5E-08 9.7E-13 106.6 7.9 135 610-784 17-158 (218)
473 cd01131 PilT Pilus retraction 98.6 5.6E-08 1.2E-12 104.9 8.1 118 625-792 3-122 (198)
474 TIGR00618 sbcc exonuclease Sbc 98.6 7.3E-08 1.6E-12 128.7 10.3 77 717-794 948-1036(1042)
475 PRK06793 fliI flagellum-specif 98.6 1.9E-07 4.2E-12 110.4 11.9 167 595-801 131-305 (432)
476 COG5265 ATM1 ABC-type transpor 98.6 4.7E-06 1E-10 95.2 22.2 256 963-1229 10-276 (497)
477 smart00382 AAA ATPases associa 98.6 9.1E-07 2E-11 88.3 14.9 118 622-778 1-125 (148)
478 TIGR02168 SMC_prok_B chromosom 98.6 5.2E-08 1.1E-12 133.0 7.5 76 715-791 1085-1164(1179)
479 cd01120 RecA-like_NTPases RecA 98.6 4.7E-07 1E-11 93.6 12.6 129 625-782 1-140 (165)
480 TIGR03238 dnd_assoc_3 dnd syst 98.5 6.2E-08 1.3E-12 113.9 4.5 47 611-659 20-67 (504)
481 PF13304 AAA_21: AAA domain; P 98.5 2.7E-07 5.8E-12 102.5 8.2 63 719-782 236-302 (303)
482 TIGR00767 rho transcription te 98.5 4.8E-07 1E-11 105.0 9.7 84 560-650 101-195 (415)
483 PRK06067 flagellar accessory p 98.4 2.2E-06 4.7E-11 95.2 14.1 148 619-792 21-186 (234)
484 TIGR02169 SMC_prok_A chromosom 98.4 3.5E-07 7.6E-12 124.9 8.8 75 717-792 1072-1150(1164)
485 KOG0057 Mitochondrial Fe/S clu 98.4 0.00011 2.5E-09 86.9 27.0 279 935-1229 74-365 (591)
486 PF09818 ABC_ATPase: Predicted 98.4 3.2E-06 7E-11 98.2 13.2 172 600-796 227-416 (448)
487 PRK10246 exonuclease subunit S 98.3 8.5E-07 1.9E-11 118.0 8.9 75 717-792 947-1031(1047)
488 PRK02224 chromosome segregatio 98.3 9.9E-07 2.2E-11 116.7 8.7 76 718-794 780-869 (880)
489 TIGR01420 pilT_fam pilus retra 98.3 1.1E-06 2.4E-11 102.9 7.9 123 620-791 119-242 (343)
490 TIGR00101 ureG urease accessor 98.3 3.3E-07 7.2E-12 98.8 3.0 100 625-724 3-108 (199)
491 COG3910 Predicted ATPase [Gene 98.2 1.9E-05 4E-10 81.3 12.6 162 624-805 38-214 (233)
492 PRK06995 flhF flagellar biosyn 98.2 1.4E-06 3E-11 104.6 4.8 142 615-778 248-401 (484)
493 cd02023 UMPK Uridine monophosp 98.1 2E-06 4.3E-11 92.9 5.2 107 625-753 1-114 (198)
494 TIGR00611 recf recF protein. A 98.1 3E-06 6.5E-11 99.8 7.1 63 718-783 274-345 (365)
495 cd01125 repA Hexameric Replica 98.1 4.4E-06 9.5E-11 93.0 7.8 126 623-780 1-160 (239)
496 PRK01889 GTPase RsgA; Reviewed 98.1 4E-06 8.8E-11 98.4 7.7 87 613-699 185-286 (356)
497 PF13748 ABC_membrane_3: ABC t 98.1 0.0076 1.7E-07 65.1 31.2 176 269-457 2-178 (237)
498 cd01130 VirB11-like_ATPase Typ 98.0 6.2E-06 1.4E-10 88.1 6.3 47 612-658 14-60 (186)
499 PRK11098 microcin B17 transpor 98.0 0.019 4.2E-07 68.0 35.4 216 340-574 160-394 (409)
500 PRK14079 recF recombination pr 98.0 1E-05 2.3E-10 94.9 7.9 77 718-800 262-347 (349)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.5e-218 Score=2042.96 Aligned_cols=1024 Identities=42% Similarity=0.686 Sum_probs=937.4
Q ss_pred CCCCccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 000905 197 QTELGKAGL--LRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNV 274 (1231)
Q Consensus 197 ~~p~~~a~~--~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~ 274 (1231)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++. +++|+++++++++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~---~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS---GKKPSLLRALLRT 198 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc---cCCcHHHHHHHHH
Confidence 344445555 99999999999999999999999999999999999999999999999886432 2578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1231)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~ 354 (1231)
|++++++.+++.++.+...+++|++++.+++|.++++.+.+.|+.++++++++.++++++.++|++..+++|+|+|+++.
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999987766778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1231)
Q Consensus 355 ~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~ 434 (1231)
++||+|+|+++...++++++|+++|+|++|+++++++..++|.+|.+|+|+++++++||..+|+++++|++++++++|++
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTII 514 (1231)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 514 (1231)
.+++++++++|++.|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++++++..+..++..+.++++|.++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCc
Q 000905 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1231)
Q Consensus 515 ~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 594 (1231)
++++|++|++..++.+|+..+|+++++|+.++.|+.++|+.++.+.|+.||++|+++||..+|.+++...+.+.++.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 99999999954347899999999999999999999999999999999999999999999998887654433233445668
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCH
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TI 674 (1231)
|+++|++|+|+++++.++|+||||+||+|+++||||++||||||||++|+||+++.+|++.++|++|||||+||||||||
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 99999999999865667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 000905 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1231)
Q Consensus 675 reNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t 754 (1231)
||||+||+|||+++|++|+++|+|++|++.||+||+|+|||||+||||||||||+||||+|+|+||||||||+||||+||
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHHHHHhhhhhccCCCCCCCCC
Q 000905 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834 (1231)
Q Consensus 755 ~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 834 (1231)
++|||++|+++.+++||||+|||+++++++||+|++|+||+|.++|+|+||+++++.|.++..+........ .+....
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~--~~~~~~ 756 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE--ASEKDL 756 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccc--cccccc
Confidence 999999999999999999999999999999999999999999999999999999999998843322111110 000000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCcc-ccccccccccchHHHhhcCCCChHHHHHHHHhccchhHHHHHHHHHHHHH
Q 000905 835 GGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFV 913 (1231)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~ 913 (1231)
...+. ....+.+.....+...+. ...++...+++++|+++.|+|+|++|++|+++++|+..+++.++++++.+
T Consensus 757 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 757 ESGES------SRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred ccccc------ccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 00000 000000000000000000 00111235677889999999999999999998788888877888899999
Q ss_pred HHHHHHHHHHHhhhcCCC------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 000905 914 GLQAAATYWLAYAIQIPK------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1231)
Q Consensus 914 ~~~~~~~~wl~~~~~~~~------~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD 987 (1231)
++.++++|||++|++.+. .+..+|+++|++++++++++.+++++.+..+|++||++||++|+++|+||||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999997642 35678999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 000905 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1231)
Q Consensus 988 ~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s 1067 (1231)
+||+||||||||||++.||..+|..+.+++.++++++++++++++++|+++++++|+.++|+++|+||+++||||||||+
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000905 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY 1147 (1231)
Q Consensus 1068 ~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~~v~~~~~~ 1147 (1231)
++|||+|+||+||++|++||||||+|++|+++|++++|.|++++|+..++|||+++|+|++|+++++++|+++++...+.
T Consensus 991 itRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 991 ITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred cccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988765444
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1148 VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1148 ~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
.+||.+||++|||+++|++++|+||+++++|++|+|||||.||+++|+|+|+.+++.+||++||++|+|+|+||++||||
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 88999999999999999999999999999999999999999999999999998887779999999999999999999999
Q ss_pred CCCC
Q 000905 1228 ELIY 1231 (1231)
Q Consensus 1228 ~l~~ 1231 (1231)
++|.
T Consensus 1151 ~lp~ 1154 (1381)
T KOG0054|consen 1151 NLPL 1154 (1381)
T ss_pred CCcc
Confidence 9984
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.3e-165 Score=1649.05 Aligned_cols=1191 Identities=28% Similarity=0.451 Sum_probs=953.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCcc-cchhHHHHHHHHHHHHHHHHHH---HHHHHhhhccCCc-
Q 000905 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKN-HNYGRI-RRECVSIVVSACCAVVGIAYLG---YCLWNLIAKNDSS- 95 (1231)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~- 95 (1231)
.||||++++++|+|++|+|+++|.+++. +++. +..++. +..+.+..+.++..+.....+. .+......+....
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWL-IKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHH-hccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 4999999999999999999999988864 3331 212222 1222332222222222211111 1111111111111
Q ss_pred chh-HH-HHHHHHHHHHHHHHHHH---Hh--ccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhHhHHHH
Q 000905 96 MSW-LV-STVRGLIWVSLAISLLV---KR--SKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLL 165 (1231)
Q Consensus 96 ~~~-~~-~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1231)
.+. .. .....++|+.+.+++.. ++ .+...+.+++||++. +++.............. ...++..+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFV-LYLYISEVAAQVL 186 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHHHHHHHhccc-cceehhHHHHHHH
Confidence 111 11 22344555543322222 12 233346678899887 33322221221221110 1224444444443
Q ss_pred HHHHH-hhcc-cCCCCCCC------CCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcc
Q 000905 166 LLFSA-FRNF-SHFTSPNR------EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1231)
Q Consensus 166 ~~~~~-~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~ 237 (1231)
+.+.. +... .+...+.. ..+..+++...+.+++||++||++||++|+|++|++++|||++|+.+|||+|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~ 266 (1622)
T PLN03130 187 FGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTW 266 (1622)
T ss_pred HHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 32222 1111 11111110 0112345555667889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHH
Q 000905 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1231)
Q Consensus 238 ~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~ 317 (1231)
|+++.+.++|++.|+++.+ +++++++++++++|++.++..+++.++..++.+++|++++.+++++.+++. .+.+
T Consensus 267 ~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~~~~ 340 (1622)
T PLN03130 267 DQTETLYRSFQKCWDEELK-----KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIG 340 (1622)
T ss_pred hhHHHHHHHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHH
Confidence 9999999999999987642 235789999999999999999999999999999999999999999865432 2346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHH
Q 000905 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1231)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~ 397 (1231)
+.+++++++..++..++.+++++...+++.++|..++..+|+|.++++...+++.++|+++|+|++|++++.++...++.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~ 420 (1622)
T PLN03130 341 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666667777788999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 000905 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1231)
Q Consensus 398 ~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~ 477 (1231)
+|..|+++++++++++..+|+++++|+++++++++++..+.+++++.+++.++.+|+|.+.++|+++|||+||+|+||+.
T Consensus 421 l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~ 500 (1622)
T PLN03130 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENS 500 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999988877778888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1231)
Q Consensus 478 f~~~i~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~ 557 (1231)
|.+++++.|++|++..++.........+++...|.++.+++|.++.+.+ +.+|++.+|+++++++.+..|+..+|..+.
T Consensus 501 ~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~-g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 501 FQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887776666666666667666677777776665 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChH
Q 000905 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1231)
Q Consensus 558 ~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKS 637 (1231)
.+.++++|++||.+|++.+|..+.... +.....+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 999999999999999976554221111 111123479999999999865456899999999999999999999999999
Q ss_pred HHHHHHhCCCcCCC-cEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCC
Q 000905 638 SLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1231)
Q Consensus 638 TLl~~Llg~~~~~~-G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~ 716 (1231)
||+++|+|+++|.+ |+|.++|+||||||+||||||||||||+||+|+|+++|++|+++|+|++|++.||+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeE
Q 000905 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I 796 (1231)
|.||||||||||+||||+|+|||||||||||||||+|++++|+++++++.+++||+|+|||+++.++.||+|++|+||+|
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred eEecChHHHHhcCchHHHHHHHhhhhhccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCccccccccccccchH
Q 000905 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1231)
Q Consensus 797 ~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 876 (1231)
+++|+|+||+++++.|.++++.+....+..+.. .....++.+ ......... ...+ +.....+...+....+.++
T Consensus 818 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVEEN---GEEEDDQTS-SKPVANGNA-NNLK-KDSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred EEeCCHHHHHhcchhHHHHHHhccccccccccc---ccccccccc-ccccccccc-cccc-ccccccccccccchhhhhH
Confidence 999999999999999998886543211100000 000000000 000000000 0000 0000000000111235677
Q ss_pred HHhhcCCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHHHHHHHHHHHH
Q 000905 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVY 953 (1231)
Q Consensus 877 E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~l~vy~~l~~~~~~~~~ 953 (1231)
|+++.|.|+|++|+.|+++.++++.+++++++.++.++..+++++|++.|++... ....+|+++|++++++..++.+
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998666655555566667778888899999999986421 2346789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 000905 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1231)
Q Consensus 954 ~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~ 1033 (1231)
++.+++.+.+.++++++|++|+++++|+||+|||+||+|||+|||++|++.+|..+|..+..++..++.++++++++++.
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHH
Q 000905 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1231)
Q Consensus 1034 ~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~ 1113 (1231)
.|+++++++|+.+++++++++|.+++|+++|+++.++||+++||+|+++|+.|||||+.+++|.+++.+.+|.++++.+.
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 000905 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY-----VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1231)
Q Consensus 1114 ~~~~~rWl~~rl~~i~~~~~~~~a~~~v~~~~~~-----~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~ 1188 (1231)
....++|+++|+++++++++++.+.+++.. .+. ..++.+|++++|++++++.++++++.++++|+.|+|+||+.
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877777665542 222 12789999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCCCC
Q 000905 1189 QFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHMELI 1230 (1231)
Q Consensus 1189 eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~l~ 1230 (1231)
||.++|+|++...++..||++||.+|.|+|+||+++|+|+.+
T Consensus 1211 e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~ 1252 (1622)
T PLN03130 1211 TYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP 1252 (1622)
T ss_pred HHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC
Confidence 999999998765555667889999999999999999998764
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.5e-161 Score=1616.58 Aligned_cols=1188 Identities=26% Similarity=0.434 Sum_probs=943.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccc-chhHHHHHHHHHHHHHHHHHHHHHH---HhhhccCCc-c
Q 000905 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIR-RECVSIVVSACCAVVGIAYLGYCLW---NLIAKNDSS-M 96 (1231)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~ 96 (1231)
.|||||+++++|+|++|+|+++|.+++...++++..++.+ ..+.+....++..+.....+...+. ....+.... .
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (1495)
T PLN03232 29 YTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEETDLP 108 (1495)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 3899999999999999999999988874431222222222 2223322222222222222211111 111111110 0
Q ss_pred hh-HH-HHHHHHHHHHHHHHHH---HHh--ccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhHhHHHHH
Q 000905 97 SW-LV-STVRGLIWVSLAISLL---VKR--SKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLLL 166 (1231)
Q Consensus 97 ~~-~~-~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1231)
.. .. .....++|+...+.+. .++ .+...+.+++||++. +++.............. ...++..+.+.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 187 (1495)
T PLN03232 109 PFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTA-LYLCISSRCCQALF 187 (1495)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHHHHHHHHhccc-cceehhHHHHHHHH
Confidence 11 11 2223444443222221 122 233346678899887 33322221111111100 12244444444332
Q ss_pred HHHH-hhcc-cCCCCCCCC-------CCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcc
Q 000905 167 LFSA-FRNF-SHFTSPNRE-------DKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1231)
Q Consensus 167 ~~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~ 237 (1231)
.+.. +... .+.. +... ++..++..+.+.+++||+++|+|||+||+|++|++++|||++|+.+|||+|+++
T Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~ 266 (1495)
T PLN03232 188 GILLLVYIPELDPY-PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQW 266 (1495)
T ss_pred HHHHHHhcccCCCC-CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 2222 1111 1111 1000 000111112245678999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHH
Q 000905 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1231)
Q Consensus 238 ~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~ 317 (1231)
|+++.+.++|++.|+++.+ +++++++++++++|++.++..+++.++.+++.+++|++++.+++++.+++. .+.+
T Consensus 267 ~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~~~ 340 (1495)
T PLN03232 267 DQTETLIKRFQRCWTEESR-----RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AWVG 340 (1495)
T ss_pred hhHHHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchH
Confidence 9999999999999987632 235789999999999999999999999999999999999999999865432 2346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHH
Q 000905 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1231)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~ 397 (1231)
+.+++++++..++.+++.+++++...+++.++|..++..+|+|.++++...+++.++|+++|+|++|+++++++...++.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~ 420 (1495)
T PLN03232 341 YVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHG 420 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777888888778888889999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 000905 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1231)
Q Consensus 398 ~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~ 477 (1231)
+|..|+++++++++++..+|+++++++++++++++++..+++++++.+++.++.+|+|.+.++|.++|||+||+|+||+.
T Consensus 421 l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~ 500 (1495)
T PLN03232 421 LWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKS 500 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999998888877777778888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1231)
Q Consensus 478 f~~~i~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~ 557 (1231)
+.+++++.|++|.+..++.........+.....|.++.+++|.++.+.+ +.+|++.+|+++++++.+..|+..+|..+.
T Consensus 501 ~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~-~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~ 579 (1495)
T PLN03232 501 FESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLG-GDLTPARAFTSLSLFAVLRSPLNMLPNLLS 579 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877666555555555566666556666666554 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChH
Q 000905 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1231)
Q Consensus 558 ~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKS 637 (1231)
.+.++++|++||.+|++.+|...+.. .+.....+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||
T Consensus 580 ~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1495)
T PLN03232 580 QVVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKT 657 (1495)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHH
Confidence 99999999999999997654321111 1111123479999999999864456899999999999999999999999999
Q ss_pred HHHHHHhCCCcCCCcE-EEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCC
Q 000905 638 SLLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1231)
Q Consensus 638 TLl~~Llg~~~~~~G~-I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~ 716 (1231)
||+++|+|+++|++|. +.++|+||||||+||||||||||||+||+++|+++|++|+++|+|++|++.||+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~ 737 (1495)
T PLN03232 658 SLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGER 737 (1495)
T ss_pred HHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCC
Confidence 9999999999999975 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeE
Q 000905 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I 796 (1231)
|.+|||||||||+||||+|+|||||||||||||||+|++++|+++++.+.+++||+|+||||++.++.||+|++|+||+|
T Consensus 738 G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i 817 (1495)
T PLN03232 738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMI 817 (1495)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred eEecChHHHHhcCchHHHHHHHhhhhhccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCccccccccccccchH
Q 000905 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1231)
Q Consensus 797 ~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 876 (1231)
+++|+|+|++++++.|+++++.+.......+ . ..+.++.... .+...... ..++....+..++....++++
T Consensus 818 ~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~----~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 888 (1495)
T PLN03232 818 KEEGTFAELSKSGSLFKKLMENAGKMDATQE-V----NTNDENILKL---GPTVTIDV-SERNLGSTKQGKRGRSVLVKQ 888 (1495)
T ss_pred EEecCHHHHHhcchhHHHHHHhccccccccc-c----cccccccccc---cccccccc-cccccccccccccchhhhhhH
Confidence 9999999999999999988865432111000 0 0000000000 00000000 000000000000111235678
Q ss_pred HHhhcCCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CCchHHHHHHHHHHHHHHHHHH
Q 000905 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVY 953 (1231)
Q Consensus 877 E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~l~vy~~l~~~~~~~~~ 953 (1231)
|+++.|.|+|++|+.|+++.++++.+.+++++.++.++..+++++|+++|++... ....+|+++|++++++..++.+
T Consensus 889 e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~ 968 (1495)
T PLN03232 889 EERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTF 968 (1495)
T ss_pred HHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998776666555666666777888899999999986532 2356899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 000905 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1231)
Q Consensus 954 ~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~ 1033 (1231)
++.+++...+.++++++|++|+++++|+|++|||++|+|||+|||++|++.||..+|..+..++..++.++++++++++.
T Consensus 969 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~ 1048 (1495)
T PLN03232 969 TNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTV 1048 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888888877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHH
Q 000905 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1231)
Q Consensus 1034 ~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~ 1113 (1231)
+|.++++++|+.+++++++.+|.+++|+++|+++.++||+++||+|+++|+.|||||+.+++|.+++.+.+|.++++.+.
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1495)
T PLN03232 1049 STISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLA 1128 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88888788888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 000905 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV-----APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1231)
Q Consensus 1114 ~~~~~rWl~~rl~~i~~~~~~~~a~~~v~~~~~~~-----~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~ 1188 (1231)
....++|+.+|+++++++++++.+.+++. ..+.+ .++.+|++++|+.++++.++++++.++++|+.++|+|||.
T Consensus 1129 ~~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~ 1207 (1495)
T PLN03232 1129 NTSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVG 1207 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777666655543 22322 2678999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCCCC
Q 000905 1189 QFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHMELI 1230 (1231)
Q Consensus 1189 eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~l~ 1230 (1231)
||.++|+|++...++..||++||.+|+|+|+||++||+|+.+
T Consensus 1208 e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~ 1249 (1495)
T PLN03232 1208 NYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP 1249 (1495)
T ss_pred HHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC
Confidence 999999998754444557778999999999999999998754
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.3e-156 Score=1569.35 Aligned_cols=1203 Identities=29% Similarity=0.472 Sum_probs=953.7
Q ss_pred CCcCcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 000905 17 GEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRREC---VSIVVSACCAVVGIAYLGYCLWNLIAKND 93 (1231)
Q Consensus 17 ~~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1231)
..||| ||||++++++|+|+.++++++|..++. +++++ ....+.++ .+.....+..++.+..+.+.+|.......
T Consensus 19 ~~~d~-t~~f~~~~~~~~p~~~~~~~~~~~~~~-l~~~~-~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1522)
T TIGR00957 19 SNPDF-TKCFQNTVLAWVPCFYLWVCFPCYFLY-LSRHD-RGYIQMTHLNKTKTALGFLLWIVCWADLFYSFWERSHGRA 95 (1522)
T ss_pred CCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHH-hhccC-CCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 35788 999999999999999999999988763 33222 12112222 23222222222222223333443211111
Q ss_pred C-cchhHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHH-HHHHHHHhhcc---cccccchhHhHHHHH
Q 000905 94 S-SMSWLVSTVRGLIWVSLAISLLVKRS--KWIRMLITLWWMSFSLLVLA-LNIEILARTYT---INVVYILPLPVNLLL 166 (1231)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~ 166 (1231)
. ....+...+..++|+..++....++. ..++..+..||++..++... .+......... ...+....+...+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (1522)
T TIGR00957 96 PAPVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFAL 175 (1522)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHH
Confidence 1 11122334444555432222222222 22335667888776544322 11111111100 011111111111111
Q ss_pred HHHHhhcccCCCCCCCCCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHH
Q 000905 167 LFSAFRNFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQK 246 (1231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~ 246 (1231)
....+.... ..+.. ...++..++++++||++||++||++|||++|++++|||++|+.+|||+++++++++.+.++
T Consensus 176 ~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~ 250 (1522)
T TIGR00957 176 VLSQLVLSC--FSDKS---PLFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPV 250 (1522)
T ss_pred HHHHHHHHh--hcCCC---CccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHH
Confidence 111111100 00000 0001101123468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc------------------------------------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 247 FAYAWDSLVRENN------------------------------------SNNNGNLVRKVITNVYLKENIFIAICALLRT 290 (1231)
Q Consensus 247 f~~~w~~~~~~~~------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 290 (1231)
|++.|+++.++.. ++.++++++++++++|++.++..+++.++..
T Consensus 251 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~ 330 (1522)
T TIGR00957 251 LVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHD 330 (1522)
T ss_pred HHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999998743210 1123578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC
Q 000905 291 IAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK 370 (1231)
Q Consensus 291 ~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~i~~K~l~l~~~~~~ 370 (1231)
++.+++|++++.+++++.+++.+...++.+++++++..++.+++.++|++...+++.++|.+++..+|+|+++++...++
T Consensus 331 ~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~ 410 (1522)
T TIGR00957 331 LMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARK 410 (1522)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcC
Confidence 99999999999999998655444456788888888888888888888888899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 371 KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMI 450 (1231)
Q Consensus 371 ~~~~G~iinl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1231)
+.++|+++|+|++|++++.++..++|.+|..|++++++++++|..+|+++++++++++++++++..+++++++.+++.++
T Consensus 411 ~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1522)
T TIGR00957 411 SSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMK 490 (1522)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999999888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC
Q 000905 451 AQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTG-SAP 529 (1231)
Q Consensus 451 ~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~-~~~ 529 (1231)
.+|+|.+.++|+++|||+||+|+||+.|.+++++.|++|++..++.........+.+...|.++.+++|++|.+.. ++.
T Consensus 491 ~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 570 (1522)
T TIGR00957 491 SKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNI 570 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999988777766666666666778777777777776654 467
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhcccc-CCCCcEEEEeeeEeeCCCC
Q 000905 530 LNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ-KSDRSVKIQEGNFSWDPEL 608 (1231)
Q Consensus 530 lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~-~~~~~I~~~~~sf~y~~~~ 608 (1231)
++++.+|+++++++.+..|+..+|..+..+.++++|++||++|++.++.++......... ...+.|+++|++|+|+++
T Consensus 571 l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 649 (1522)
T TIGR00957 571 LDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD- 649 (1522)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-
Confidence 999999999999999999999999999999999999999999997655432111111111 112479999999999743
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHH
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKAR 688 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~ 688 (1231)
++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|+||||||+||+|++||||||+||+++|+++
T Consensus 650 ~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 729 (1522)
T TIGR00957 650 LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKY 729 (1522)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH--Hh
Q 000905 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AA 766 (1231)
Q Consensus 689 ~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~--~~ 766 (1231)
|++++++|++.+|++.+|+||+|++||+|.+|||||||||+||||+|++|||+||||||||||+++++++++.++. +.
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~ 809 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988763 46
Q ss_pred cCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHHHHHhhhhhccCCCCCC--CC--CCCccc--c
Q 000905 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN--AG--QGGAEK--V 840 (1231)
Q Consensus 767 l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~--~~--~~~~~~--~ 840 (1231)
++++|+|+|||+++.++.||+|++|++|+|+++|+|+|++++++.|.++.+.+.......+..+. .. ..+.+. .
T Consensus 810 ~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1522)
T TIGR00957 810 LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLI 889 (1522)
T ss_pred hcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999999999888898887644321110000000 00 000000 0
Q ss_pred cc--------ccCCCC----CCCCCCCCCCCC-Ccc--c--cccccccccchHHHhhcCCCChHHHHHHHHhccchhHHH
Q 000905 841 EK--------GRTARP----EEPNGIYPRKES-SEG--E--ISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLC 903 (1231)
Q Consensus 841 ~~--------~~~~~~----~~~~~~~~~~~~-~~~--~--~~~~~~~~l~~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~ 903 (1231)
++ ..+... ............ +.. + ...+...++.++|+++.|+|+|++|+.|++++ |+..++
T Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~-g~~~~~ 968 (1522)
T TIGR00957 890 ENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAI-GLFITF 968 (1522)
T ss_pred cccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHc-CHHHHH
Confidence 00 000000 000000000000 000 0 00011134567788899999999999999975 555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 904 LGVLAQSGFVGLQAAATYWLAYAIQIPK-----ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSI 978 (1231)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~wl~~~~~~~~-----~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~v 978 (1231)
++++++++.+++..+.+||+++|++... .+..+|+++|++++++..++.+++.++..+.+.++++++|++|++++
T Consensus 969 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 1048 (1522)
T TIGR00957 969 LSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNK 1048 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777888899999999986421 22457889999999999999888888889999999999999999999
Q ss_pred hcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000905 979 FKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIAT 1058 (1231)
Q Consensus 979 lrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~t 1058 (1231)
+++||+|||++|+|||+|||++|++.+|..+|..+..++..++.+++.++++++..|+++++++|+++++++++++|.++
T Consensus 1049 l~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1522)
T TIGR00957 1049 LRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVAS 1128 (1522)
T ss_pred HcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888998888889888899999999999
Q ss_pred hHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000905 1059 ARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL 1138 (1231)
Q Consensus 1059 sRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~ 1138 (1231)
+||++|++..++||+++||+|+++|+.||||||+|++|.+++.+.+|.+++++|.....++|+++|+++++++++++++.
T Consensus 1129 ~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1208 (1522)
T TIGR00957 1129 SRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAAL 1208 (1522)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887776666
Q ss_pred HHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEE
Q 000905 1139 FLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIEL 1218 (1231)
Q Consensus 1139 ~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f 1218 (1231)
+++. .++.+++|.+|++++|+++++..++++++.++++|+.|+|+|||.||.++|+|++...++..||++||.+|+|+|
T Consensus 1209 ~~v~-~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f 1287 (1522)
T TIGR00957 1209 FAVI-SRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEF 1287 (1522)
T ss_pred HHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEE
Confidence 5543 356799999999999999999999999999999999999999999999999998654455567789999999999
Q ss_pred EeEEEEecCCCC
Q 000905 1219 RQLKVSLHMELI 1230 (1231)
Q Consensus 1219 ~~v~~rYr~~l~ 1230 (1231)
+||+++|+++.+
T Consensus 1288 ~nVsf~Y~~~~~ 1299 (1522)
T TIGR00957 1288 RNYCLRYREDLD 1299 (1522)
T ss_pred EEEEEEeCCCCc
Confidence 999999998653
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6e-146 Score=1466.32 Aligned_cols=1022 Identities=25% Similarity=0.420 Sum_probs=868.1
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 000905 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYL 276 (1231)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1231)
.+||++||++||++|||++|++++|||++|+.+|||+|+++++++.+.++|++.|+++.++ +.+.++++++++++|+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~L~~~l~~~~~ 79 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS---AKKNPKLLNALRRCFF 79 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhc---cCCCChHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999876532 1346789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1231)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~ 355 (1231)
+.+++.+++.++.+++.+++|++++.+++|+...+. ....++.++++++++.++..++.+++++...+++.++|.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~ 159 (1490)
T TIGR01271 80 WRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFS 159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999853222 2345778888888888888888888888889999999999999
Q ss_pred HHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNV 435 (1231)
Q Consensus 356 ~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~ 435 (1231)
.+|+|+++++...+++.++|+++|+|++|++++.+...++|.+|..|+++++++++||..+|+++++|+++++++++++.
T Consensus 160 ~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 160 LIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIIS 515 (1231)
Q Consensus 436 ~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 515 (1231)
++++++.+.+++.++.+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..........+++..|.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877666666667777888888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCc
Q 000905 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVR-MIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1231)
Q Consensus 516 ~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~-~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 594 (1231)
+++|++|.+.+ .++++.+|+++++++.++.|+. .+|..+..+.++.+|++||++||..+|.++... ......
T Consensus 320 ~~~f~~y~~~~--~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-----~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK--GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-----NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----cCCCCc
Confidence 88888777664 3689999999999999999984 799999999999999999999998766432110 112346
Q ss_pred EEEEeeeEeeCCC-------------------------------CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHH
Q 000905 595 VKIQEGNFSWDPE-------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1231)
Q Consensus 595 I~~~~~sf~y~~~-------------------------------~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~L 643 (1231)
|+++|++|+|+.. ..+++|+|+||+|++||+++|+||+|||||||+++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999531 014689999999999999999999999999999999
Q ss_pred hCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 644 LGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 644 lg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
+|+++|++|+|.++|+||||||+||+|++||+|||+||.++++++|++++++|+|++|++.+|+||+|+|||+|.+||||
T Consensus 473 ~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 473 MGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred hCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChH
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||||+||||+|++||||||||||||||++++++++++++.+.++++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 553 qkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 553 QRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHhhhhh-----------cc------CC--------CCCC-C--CCCCcc--c--------------
Q 000905 804 ELLLAGTAFEQLVNAHRDAI-----------TG------LG--------PLDN-A--GQGGAE--K-------------- 839 (1231)
Q Consensus 804 eL~~~~~~~~~l~~~~~~~~-----------~~------~~--------~~~~-~--~~~~~~--~-------------- 839 (1231)
|+.++++.|.+.+....... .+ .+ +... . .+...+ +
T Consensus 633 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 633 ELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99988777766653110000 00 00 0000 0 000000 0
Q ss_pred ----------------c-c--c-ccC-------C----CCCC-CCCC--------------------CCC------CCC-
Q 000905 840 ----------------V-E--K-GRT-------A----RPEE-PNGI--------------------YPR------KES- 860 (1231)
Q Consensus 840 ----------------~-~--~-~~~-------~----~~~~-~~~~--------------------~~~------~~~- 860 (1231)
. + . ... . .++. +... ... ++.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 0 0 0 000 0 0000 0000 000 000
Q ss_pred -----------------Cc--------ccc-----c-----cccccccchHHHhhcCCCChHHHHHHHHhccchhHHHHH
Q 000905 861 -----------------SE--------GEI-----S-----VKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLG 905 (1231)
Q Consensus 861 -----------------~~--------~~~-----~-----~~~~~~l~~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~ 905 (1231)
++ .+. . .+...+++++|+++.|.|+|++|+.|+++++++.+++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 00 000 0 000023456788899999999999999987665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC--------C-C-------------CchHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 906 VLAQSGFVGLQAAATYWLAYAIQIP--------K-I-------------TSGIL-IGVYAGVSTASAVFVYFRSFFAAHL 962 (1231)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~--------~-~-------------~~~~~-l~vy~~l~~~~~~~~~~~~~~~~~~ 962 (1231)
+++.++.+++..+.+||++.|...+ . . ...+| +++|++++.+..++.+++.+++...
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777888999999999886421 0 0 11233 5666666666667778888889999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000905 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1231)
Q Consensus 963 ~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~i 1042 (1231)
+.++++++|++|+++++++|++|||++|+|||+|||++|++.+|..+|..+..++.+++.+++.++++++..|+++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHHHHHHhHHHH
Q 000905 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122 (1231)
Q Consensus 1043 pl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~ 1122 (1231)
|+++++++++++|.+++||++|+++.++||+++||+|+++|+.||||||++++|.+++.+.+|.+++++|.....++|+.
T Consensus 1033 ~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1112 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQ 1112 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCC
Q 000905 1123 LRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202 (1231)
Q Consensus 1123 ~rl~~i~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~ 1202 (1231)
+|+++++++++++++++++. ...+++|.+|++++|++++++.++++++.++++|+.|+|+|||.+|.++|+|++...+
T Consensus 1113 ~~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~ 1190 (1490)
T TIGR01271 1113 MRIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 99999887665554444332 2346889999999999999999999999999999999999999999999988653211
Q ss_pred --------------CCCCCCCCCCCCeEEEEeEEEEecCCCC
Q 000905 1203 --------------DKRPPSSWPFKGRIELRQLKVSLHMELI 1230 (1231)
Q Consensus 1203 --------------~~~pp~~WP~~G~I~f~~v~~rYr~~l~ 1230 (1231)
...||++||.+|+|+|+||+++|+++.+
T Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~ 1232 (1490)
T TIGR01271 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGR 1232 (1490)
T ss_pred cccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCc
Confidence 1235678999999999999999998754
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-134 Score=1357.20 Aligned_cols=1032 Identities=26% Similarity=0.404 Sum_probs=866.2
Q ss_pred CCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcC---------------
Q 000905 196 NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNS--------------- 260 (1231)
Q Consensus 196 ~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~--------------- 260 (1231)
.+.||++||||.++++.|++|.+.++.|..|+++|||+...+.|+-+...++.+..++...++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1560)
T PTZ00243 58 TPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDA 137 (1560)
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeeccc
Confidence 35799999999999999999999999999999999999999999987777766554332211000
Q ss_pred --------------------------------------------------------------------------------
Q 000905 261 -------------------------------------------------------------------------------- 260 (1231)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (1231)
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1560)
T PTZ00243 138 SSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSST 217 (1560)
T ss_pred cccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeeccc
Confidence
Q ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHH
Q 000905 261 ----------NNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVV 330 (1231)
Q Consensus 261 ----------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~ 330 (1231)
..+..+++|++++++++.++..++++++.+++.+++|++++.+++++++++.....++.+++++++..++
T Consensus 218 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~ 297 (1560)
T PTZ00243 218 GSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLI 297 (1560)
T ss_pred ccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 0112368999999999999999999999999999999999999999865554555677888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC--CCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000905 331 ESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLA 408 (1231)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~r~~L~~~i~~K~l~l~~~~~~--~~~~G~iinl~s~D~~~i~~~~~~~~~~~~~~~~i~~~ 408 (1231)
++++.+++++...+.+.++|.+|...+|+|+++++..... +.++|+++|+|++|++++.++..++|.+|..|++++++
T Consensus 298 ~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~ 377 (1560)
T PTZ00243 298 QSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLS 377 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987665 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH
Q 000905 409 IGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK 488 (1231)
Q Consensus 409 ~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~ 488 (1231)
+++||.++|+++++|+++++++++++.++.+++.+.+++.++.+|+|++.++|+++|||+||+++||+.|.+++++.|++
T Consensus 378 ~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~ 457 (1560)
T PTZ00243 378 ILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRAR 457 (1560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 489 EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDR 568 (1231)
Q Consensus 489 e~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~R 568 (1231)
|++.+++......+..+++...|.++.+++|++|.+.+ +.||++.+|+++++++.++.|+.++|..++.+.++.+|++|
T Consensus 458 El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g-~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 458 ELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG-HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888787778888889888888888888776 78999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCc------hh--------h--h-----------------cc-------------------------ccC
Q 000905 569 INAFLLDHELNND------DV--------R--R-----------------IS-------------------------LQK 590 (1231)
Q Consensus 569 i~~fl~~~e~~~~------~~--------~--~-----------------~~-------------------------~~~ 590 (1231)
|++||+.+|...+ +. . . .+ ...
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 9999976552100 00 0 0 00 000
Q ss_pred CCCcEEEEeeeEeeCCC-------------------------------------CCCCceeeEEEEeeCCeEEEEECcCC
Q 000905 591 SDRSVKIQEGNFSWDPE-------------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1231)
Q Consensus 591 ~~~~I~~~~~sf~y~~~-------------------------------------~~~~~L~~inl~i~~Ge~vaIvG~sG 633 (1231)
..+.+.++|++|+|+.. .++++|+|+||+|++|++++|+||+|
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 11246677777765310 12468999999999999999999999
Q ss_pred CChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccc
Q 000905 634 AGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713 (1231)
Q Consensus 634 SGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~I 713 (1231)
||||||+++|+|+++|++|+|.++++||||||+||+|++||+|||+|+.++++++|++++++|+|++|++.+|+|++|.+
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeC
Q 000905 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1231)
Q Consensus 714 Ge~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~ 793 (1231)
|++|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.++|+|+|+|||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999888777789999999999999999999999999
Q ss_pred CeEeEecChHHHHhcCchHHHHHHHhhhhhccCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCCccccccccccc
Q 000905 794 GQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEISVKGLTQ 872 (1231)
Q Consensus 794 G~I~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 872 (1231)
|++++.|+|+|++++ +.|.++...........+........ ..+................... +..+.........+
T Consensus 857 G~i~~~G~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1560)
T PTZ00243 857 GRVEFSGSSADFMRT-SLYATLAAELKENKDSKEGDADAEVA-EVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGR 934 (1560)
T ss_pred CEEEEecCHHHHHhC-hHHHHHHHhhcccccccccccccccc-cccccccccccccccccccccccccccccccccccch
Confidence 999999999999875 45776654322111000000000000 0000000000000000000000 00000000111245
Q ss_pred cchHHHhhcCCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHHHHH
Q 000905 873 LTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP-KITSGILIGVYAGVSTASAVF 951 (1231)
Q Consensus 873 l~~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~~l~vy~~l~~~~~~~ 951 (1231)
+.++|+++.|.|+|++|+.|+++++|..+++++++.+++.+++..+.++|++.|++.. ..+...|+++|++++++..++
T Consensus 935 l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~ 1014 (1560)
T PTZ00243 935 LMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFS 1014 (1560)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHH
Confidence 6778889999999999999999877666555555555666777888999999998643 234567899999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000905 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT 1031 (1231)
Q Consensus 952 ~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~ 1031 (1231)
.+++.+.....+.++++++|++|+++++++|++|||++|+|||+|||++|++.+|..+|..+..++..++.+++++++++
T Consensus 1015 ~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~ 1094 (1560)
T PTZ00243 1015 VPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTS 1094 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778889999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchH
Q 000905 1032 FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLF 1111 (1231)
Q Consensus 1032 ~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~ 1111 (1231)
+..|+++++++|+.+++++++++|.+.+|+++|+++.++||+++|++|+++|+.|||||+.+++|.+++.+.+|.+.+++
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 88898888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 000905 1112 FHTNGVMEWLILRVEALQNLTLFTAALFLVL---IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1231)
Q Consensus 1112 ~~~~~~~rWl~~rl~~i~~~~~~~~a~~~v~---~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~ 1188 (1231)
|.....++|+++|+++++++++++.+++.+. ...+.+++|.+|++++|+++++..++++++.++++|+.|+|+|||.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876655554432 2244578999999999999999999999999999999999999999
Q ss_pred hhhc-CCCCCCCC-----------------------CCCCCCC---CCCCCCCeEEEEeEEEEecCCCC
Q 000905 1189 QFMH-IPPEPPAI-----------------------VEDKRPP---SSWPFKGRIELRQLKVSLHMELI 1230 (1231)
Q Consensus 1189 eY~~-l~~E~~~~-----------------------~~~~~pp---~~WP~~G~I~f~~v~~rYr~~l~ 1230 (1231)
+|.+ .|+|+... .++..|+ +.||.+|.|+|+||+++|+++.|
T Consensus 1255 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~ 1323 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLP 1323 (1560)
T ss_pred HHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCC
Confidence 9995 55553111 0111223 34678899999999999998754
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.9e-94 Score=892.31 Aligned_cols=927 Identities=19% Similarity=0.219 Sum_probs=655.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccCCC--cc----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000905 275 YLKENIFIAICALLRTIAVVVGPLLLYA---FVNYSNRGE--EN----LQEGLSIVGCLIITKVVESFT-QRHCFFGSRR 344 (1231)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~---li~~~~~~~--~~----~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 344 (1231)
-+.++++..+..+...+.+..+|++... +.+.+.... .. ...++.++ .+.+..++.++. ...|.+.+.|
T Consensus 23 ~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~~c~~~~geR 101 (1228)
T KOG0055|consen 23 DRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQVSCWMRTGER 101 (1228)
T ss_pred chhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777778888888987533 333221111 11 11122222 222223333333 2345556677
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 345 SGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPG 423 (1231)
Q Consensus 345 ~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~g 423 (1231)
...|+|.....++ ||....+++.+.+|++.++++.|++++++.+.. +..++.....++.++++.|...+..++++
T Consensus 102 q~~riR~~yl~~i----LrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~ 177 (1228)
T KOG0055|consen 102 QTARIRSKYLKAI----LRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVM 177 (1228)
T ss_pred HHHHHHHHHHHHH----HhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777665444 555667778888899999999999999886542 33333333344444444444433344554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000905 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY- 502 (1231)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~- 502 (1231)
+....++......+++.+.+...+..++..+..+.+.|.+++||++.+|+-|+...++..+.-+.-.|.-.+..+...+
T Consensus 178 l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~ 257 (1228)
T KOG0055|consen 178 LSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLG 257 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455556677777777777888888899999999999999999999776555444333322322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCc
Q 000905 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE-LNND 581 (1231)
Q Consensus 503 ~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e-~~~~ 581 (1231)
..+.+++.-......+|+|..++..+..++|.+++.+...-.-...+.+....+..+.++++|..+|.+.++..+ .+..
T Consensus 258 ~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~ 337 (1228)
T KOG0055|consen 258 LGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPY 337 (1228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcc
Confidence 222333333334455677755555578889888877665555566778888889999999999999999887543 2221
Q ss_pred hhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---
Q 000905 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1231)
Q Consensus 582 ~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--- 658 (1231)
...........+.|+|+||.|+||.+++.++|+|+||+||+||++|+||||||||||++++|.|+|+|++|+|.+||
T Consensus 338 ~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 338 SKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDI 417 (1228)
T ss_pred cccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccc
Confidence 11111233456889999999999998888999999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEeCCCcCCCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 ----------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 ----------~iayv~Q~~~lf~~TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
+||.|.|+|.||++||+|||+||+|. +++++++++++++.++++..||+|++|.+||+|..||||||||
T Consensus 418 ~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 418 RNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred hhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 59999999999999999999999984 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHh
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|||||||.+||+||||||||||||+++|+. ++++++...+|||+|+||||++++++||+|+||++|+|+|.|+|+||++
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se~~-Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESERV-VQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHHHH-HHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999985 6889999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHhhhhhccCCCCCCCCCCCccccccccCCCCCCCCCCCC--CCCCCc-cccccccccccchHHHhhcCCC
Q 000905 808 AGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYP--RKESSE-GEISVKGLTQLTEDEEMEIGDV 884 (1231)
Q Consensus 808 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~l~~~E~~~~G~V 884 (1231)
.+|.|.++++.|+....+.+.+.+... .+..+....... ...+..+ ...... ...+.++......+|+
T Consensus 577 ~~G~Y~~lv~~Q~~~~~~~~~~~~~~~--~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------ 647 (1228)
T KOG0055|consen 577 LGGIYSSLVRLQELEKAAEDEEEEESL--KEERSRSLKSSS-SSPSLSRGSNRSNLLSVKPEGEDPEEPVSEED------ 647 (1228)
T ss_pred ccchHHHHHHHHhhhhhhhccccccch--hhhhhhcccccc-ccccccCCcccccccccccccccccccccccc------
Confidence 999999999987644321110000000 000000000000 0000000 000000 0000000000001111
Q ss_pred ChHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCC-C---CCchHHHHHHHHHHHHHHHHHHHH
Q 000905 885 GWKPFMDYLNVSK-GMSLLCLGVLAQSGFVGLQAAATYWLAYA----IQIP-K---ITSGILIGVYAGVSTASAVFVYFR 955 (1231)
Q Consensus 885 ~~~vy~~Y~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~wl~~~----~~~~-~---~~~~~~l~vy~~l~~~~~~~~~~~ 955 (1231)
....+++-++.+. .|+++++.+++.++..+......+-++.- ...+ + .....|..+|.++|+.+.++.++.
T Consensus 648 ~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q 727 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQ 727 (1228)
T ss_pred ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234556665544 46666666666665555555544444332 1111 1 123358889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 000905 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1231)
Q Consensus 956 ~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~--tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~ 1033 (1231)
.+++...|.+..+++...|+++++|.+++|||. |. |+|.+|+++|...+-..+...+..+++.+..++..+++.++.
T Consensus 728 ~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~ 806 (1228)
T KOG0055|consen 728 HYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIY 806 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 67 999999999999999999999999999999999999999999
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHhh-hHHHHH-HhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhh
Q 000905 1034 TWQVLVV---AIFAMVAVRFVQRYYIAT-ARELIR-INGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDA 1108 (1231)
Q Consensus 1034 ~~~~~~~---~ipl~~~~~~~~~~Y~~t-sRelkR-l~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~ 1108 (1231)
.|.+.++ ..|++++..+.+.+++.. +++.+. .|.. -....|+++.++||+||..|++|++.+.+.++...
T Consensus 807 ~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea-----~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~ 881 (1228)
T KOG0055|consen 807 GWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEA-----SKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPR 881 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9998655 478888888888877754 455544 3332 35789999999999999999999999999999888
Q ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCcChhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhchh
Q 000905 1109 SLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPGLVGLSLSYAFTL-TGTQVFLSRWYCYLANYIIS 1183 (1231)
Q Consensus 1109 ~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~~v----~~~~~~~~~g~~Gl~lsyal~l-~~~l~~~vr~~~~lE~~m~S 1183 (1231)
+..+.. ..|-++-.-+-.+++.++-|+... +..++..++..+=..+. ++++ ...+......+.+.-..-.|
T Consensus 882 ~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~-~l~~ta~~~~~~~s~~Pd~~ka~~A 957 (1228)
T KOG0055|consen 882 KSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFM-ALSFTAMALGQASSYAPDISKAKIA 957 (1228)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHH-HHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 776554 356676666666666555555432 23456667665533222 2222 22344555666788888889
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCCCCCCC-CCCeEEEEeEEEEe--cCCC
Q 000905 1184 VERIKQFMHIPPEPPAIVEDKRPPSSWP-FKGRIELRQLKVSL--HMEL 1229 (1231)
Q Consensus 1184 vERi~eY~~l~~E~~~~~~~~~pp~~WP-~~G~I~f~~v~~rY--r~~l 1229 (1231)
+.+|.+..+-+++-+...++. ..+| -+|+|+|+||+++| ||+-
T Consensus 958 a~~iF~i~dr~~~i~~~~~~~---~~~~~~~G~I~~~~V~F~YPsRP~~ 1003 (1228)
T KOG0055|consen 958 AGSIFEILDRKPTIDPDSTSG---GKLPNVKGDIEFRNVSFAYPTRPDV 1003 (1228)
T ss_pred HHHHHHHhcCCCCCCCCCCCC---CccccceeEEEEeeeEeeCCCCCCc
Confidence 999999887655322111111 1133 58999999999999 5553
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.7e-85 Score=868.31 Aligned_cols=944 Identities=14% Similarity=0.111 Sum_probs=617.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1231)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 352 (1231)
+.+++.++++.++.++..++..+.|++++.+++...... ......+ .+++..++..++.....+...+++.++...
T Consensus 56 ~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 131 (1466)
T PTZ00265 56 ASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVNDIIF---SLVLIGIFQFILSFISSFCMDVVTTKILKT 131 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888888888999999998653221 1111111 111222222222222233456778888888
Q ss_pred HHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 353 LMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICG 431 (1231)
Q Consensus 353 L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~ 431 (1231)
++..+|+|.++++..++++.+.|++.++++.|++.+++.+. .+..+...++.++.++++++..-+..+++.++++.+++
T Consensus 132 lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~ 211 (1466)
T PTZ00265 132 LKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIY 211 (1466)
T ss_pred HHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999887643 34455555555555655555443333343344344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000905 432 LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYWMS 510 (1231)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~-~~~~~~~~ 510 (1231)
.+...+.+++++..++..+..++..+.+.|.++||++||.|+.|+.+.++.++..+...+...+....... ..+...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 291 (1466)
T PTZ00265 212 ICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFI 291 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777788899999999999999999999887777654433322222222221121 12222222
Q ss_pred HHHHHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch
Q 000905 511 PTIISSVIFLGCALTGS--------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1231)
Q Consensus 511 ~~~~~~v~~~~~~l~~~--------~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~ 582 (1231)
.....++.++|..++.. +.++++.+++++........++..+...+..+.++.+|.+||.++++.++..++.
T Consensus 292 ~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~ 371 (1466)
T PTZ00265 292 LASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN 371 (1466)
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 22233444555554433 2578888877655544444455566667889999999999999999754322111
Q ss_pred hhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEc-C---
Q 000905 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G--- 658 (1231)
Q Consensus 583 ~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~-g--- 658 (1231)
......+ ....|+++|++|+|+.+++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.++ |
T Consensus 372 ~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 372 DDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNL 450 (1466)
T ss_pred CCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcch
Confidence 1111111 1247999999999985444579999999999999999999999999999999999999999999994 4
Q ss_pred ----------eEEEEeCCCcCCCCCHHHHHhcCCC---------------------------------------------
Q 000905 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP--------------------------------------------- 683 (1231)
Q Consensus 659 ----------~iayv~Q~~~lf~~TIreNI~fg~~--------------------------------------------- 683 (1231)
+|+||+|+|.||++||+|||.+|.+
T Consensus 451 ~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 451 KDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 3999999999999999999999741
Q ss_pred -------------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 000905 684 -------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1231)
Q Consensus 684 -------------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~Sal 750 (1231)
.++++++++++.++++++++.||+|++|.+|++|.+|||||||||+||||++++|+|+|||||||||
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaL 610 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSL 610 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 3567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCC----------------------------------
Q 000905 751 DAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGG---------------------------------- 794 (1231)
Q Consensus 751 D~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G---------------------------------- 794 (1231)
|+++++.+. +.+.... +|+|+|+||||+++++.||+|++|++|
T Consensus 611 D~~se~~i~-~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1466)
T PTZ00265 611 DNKSEYLVQ-KTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNN 689 (1466)
T ss_pred CHHHHHHHH-HHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccc
Confidence 999999875 5676654 589999999999999999999999986
Q ss_pred -------------eEeEecChHHHHh-cCchHHHHHHHhhhhhccCCCC--CCCCCCCccccccccCCC-CCCCC-----
Q 000905 795 -------------QITQSGNYQELLL-AGTAFEQLVNAHRDAITGLGPL--DNAGQGGAEKVEKGRTAR-PEEPN----- 852 (1231)
Q Consensus 795 -------------~I~~~Gt~~eL~~-~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~----- 852 (1231)
+|+|+|+|+||++ ++|.|+.+++.+.......... +.......+..+...... .++..
T Consensus 690 ~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1466)
T PTZ00265 690 NNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKH 769 (1466)
T ss_pred ccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 6999999997764321110000 000000000000000000 00000
Q ss_pred CCCC-C--CCCCc--cc-cccccccccchHHHh-hcCC-C--ChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000905 853 GIYP-R--KESSE--GE-ISVKGLTQLTEDEEM-EIGD-V--GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYW 922 (1231)
Q Consensus 853 ~~~~-~--~~~~~--~~-~~~~~~~~l~~~E~~-~~G~-V--~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 922 (1231)
.... . ..... .+ .+.....+....+++ +.+. . .+..++.+++.-... +++.+++.++..++.....+-
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 847 (1466)
T PTZ00265 770 ENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYPVFALL 847 (1466)
T ss_pred cccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00000 00 000000000000000 0000 1 111222332211011 111122222222222222222
Q ss_pred HHhhhc----CCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cCccch
Q 000905 923 LAYAIQ----IPK--ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRI 994 (1231)
Q Consensus 923 l~~~~~----~~~--~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~--tP~GrI 994 (1231)
++.+.+ ... .....|..++++++++..++.+++.++..+.+.+...++..++++++++.|++|||. +++|++
T Consensus 848 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l 927 (1466)
T PTZ00265 848 YAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLL 927 (1466)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHH
Confidence 222211 111 112345666777778888888888888899999999999999999999999999996 899999
Q ss_pred hhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHh------
Q 000905 995 LTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRY--YIATARELIRIN------ 1066 (1231)
Q Consensus 995 lNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~--Y~~tsRelkRl~------ 1066 (1231)
++|+++|++.+...+...+..++..++.+++.++++.+..|.+.++++|+.++....... .....++.++.+
T Consensus 928 ~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1466)
T PTZ00265 928 SAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGT 1007 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 999999999999888888888888888888888888888888776655544332221111 111122222221
Q ss_pred -------hcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHH---HHHHHHH
Q 000905 1067 -------GTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQ---NLTLFTA 1136 (1231)
Q Consensus 1067 -------s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~---~~~~~~~ 1136 (1231)
....+-..++++|+++|+.|||+|+.|++|.+++.+..+...+.........-++..-.+++. .++++..
T Consensus 1008 ~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1087 (1466)
T PTZ00265 1008 VFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWF 1087 (1466)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111234567899999999999999999999999999988776655443322222211122221 1122222
Q ss_pred HHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCC-CCCCCCCCCCCe
Q 000905 1137 ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED-KRPPSSWPFKGR 1215 (1231)
Q Consensus 1137 a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~-~~pp~~WP~~G~ 1215 (1231)
+.. +...+.++.|.+-.++.+.+.....+..+...+.+++....|.||+.+..+.++|.+...++ .+.++..+.+|.
T Consensus 1088 G~~--lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~ 1165 (1466)
T PTZ00265 1088 GSF--LIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGK 1165 (1466)
T ss_pred HHH--HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCce
Confidence 222 23467788886655555544333456677788999999999999999998876543211111 111112345799
Q ss_pred EEEEeEEEEec
Q 000905 1216 IELRQLKVSLH 1226 (1231)
Q Consensus 1216 I~f~~v~~rYr 1226 (1231)
|+|+||+++|.
T Consensus 1166 I~f~nVsF~Y~ 1176 (1466)
T PTZ00265 1166 IEIMDVNFRYI 1176 (1466)
T ss_pred EEEEEEEEECC
Confidence 99999999995
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-86 Score=778.04 Aligned_cols=545 Identities=20% Similarity=0.276 Sum_probs=443.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN---LQEGLSIVGCLIITKVVESFTQRHCFFGSRR 344 (1231)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 344 (1231)
++.+.+..|+.+..+.++.++.....+..|.++++++|.+...++. .......+.++ .+..+++.....+....
T Consensus 138 l~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l---~~~~a~~~~~r~~~~~~ 214 (716)
T KOG0058|consen 138 LLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGL---FLIGALANAIRGGLLQY 214 (716)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3456677888888899999999999999999999999976542211 11222222222 22333333222233345
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 345 SGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPG 423 (1231)
Q Consensus 345 ~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~~L~~~lg~~~l~g 423 (1231)
.+.++-..++..+|+++++....+++++.+||+++|++.|++.+.+.+ .++.......++.+.++.+++..-.-.++..
T Consensus 215 a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~ 294 (716)
T KOG0058|consen 215 AGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVT 294 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 666677777777899999999999999999999999999999998854 4577777888888888887776544334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 000905 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQLR 499 (1231)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~----f~~~i~~~r~~e~~~l~~~~~~ 499 (1231)
++.+.+++.+...++++.++..++..++..+-.+...|.|++||+||+|+-|+. |.+++++..+... +....
T Consensus 295 ~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~----k~a~a 370 (716)
T KOG0058|consen 295 LIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSK----KEAVA 370 (716)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 444444455567788888898888888888899999999999999999999964 4444444333322 21111
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000905 500 KAY-GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1231)
Q Consensus 500 ~~~-~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~ 578 (1231)
..+ ......+.......++|.|..++..+.+|.|.+.+++.|-..+..++..+...++.++++..|.+|+.++++.++.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 111 1111122233345567777778878999999999999999999999999999999999999999999999986543
Q ss_pred CCchhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC
Q 000905 579 NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1231)
Q Consensus 579 ~~~~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g 658 (1231)
-+.+....+ ....+.|+|+||+|+||.+++.++|+|+||+|+|||.+|+||||||||||++++|+++|+|++|+|.+||
T Consensus 451 i~~~G~~~p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG 529 (716)
T KOG0058|consen 451 IPLTGTLAP-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG 529 (716)
T ss_pred CCCCCcccc-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 222211112 1456899999999999999899999999999999999999999999999999999999999999999999
Q ss_pred -------------eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 -------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 -------------~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
+||+|.|||.||++||+|||.||.+ .++|++++|++.|+.+++|..+|+||+|.|||+|..|||||
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 5999999999999999999999998 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHH
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||||||||||++||.||||||+|||||+++|.. +++++...+++||||+|+||++++++||+|+|+++|+++|.|+|+|
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~l-Vq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYL-VQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHH-HHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHH
Confidence 999999999999999999999999999999985 5889999999999999999999999999999999999999999999
Q ss_pred HHhcC-chHHHHHHHhhh
Q 000905 805 LLLAG-TAFEQLVNAHRD 821 (1231)
Q Consensus 805 L~~~~-~~~~~l~~~~~~ 821 (1231)
|+++. |.|+++++.+..
T Consensus 689 Ll~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 689 LLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HhhCcccHHHHHHHHhcc
Confidence 99987 899999987654
No 10
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.5e-80 Score=772.62 Aligned_cols=545 Identities=21% Similarity=0.252 Sum_probs=419.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1231)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1231)
++.+.+.+++.+++..++.++..++..+.|++++.++|....++.+....+.+++++++..++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888899999999999999999999999999999753211111112223333334444455444444455668889
Q ss_pred HHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1231)
Q Consensus 348 ~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~ 426 (1231)
++...++..+|+|.++++..++++.++|+++|++++|+++++++.. .+..++...+..++++++++..-+..+++.+++
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 172 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGT 172 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998654 344444454544444444443332222322333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000905 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRKAY 502 (1231)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i----~~~r~~e~~~l~~~~~~~~~ 502 (1231)
+++...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.++. ++.++.+.+..+........
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (588)
T PRK11174 173 APLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAV 252 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556777778888888888999999999999999999999998776655 44444444333222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000905 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNAS---------TIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1231)
Q Consensus 503 ~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~---------~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl 573 (1231)
..+...+ + .+.++.+.++.+. +.+|.| .++.++.+...+..|+..++..+..+.+++++.+|+.+++
T Consensus 253 ~~~~~~~-~-~~~~~~~~~~~~~--g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 253 LEFFASI-S-IALVAVYFGFSYL--GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHH-H-HHHHHHHHHHHHh--cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1 1112233343333 334433 4455556667788999999999999999999999999999
Q ss_pred cccCCCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcE
Q 000905 574 LDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1231)
Q Consensus 574 ~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~ 653 (1231)
+.++.++............+.|+++|++|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+| |++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 329 ETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred cCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 765432111110011112346999999988764 357999999999999999999999999999999999999 89999
Q ss_pred EEEcC-------------eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCc
Q 000905 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1231)
Q Consensus 654 I~v~g-------------~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~ 719 (1231)
|.++| +|+||||+||||+|||||||++|+| .++|+++++++.|++++|++.||+|++|.|||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99998 5999999999999999999999976 799999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEe
Q 000905 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~ 799 (1231)
|||||||||+||||+++||+|+||||||||||++++++|. +.+.+..++||+|+||||++++++||+|++|++|+|+|+
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~-~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM-QALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999987 578788899999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHHhh
Q 000905 800 GNYQELLLAGTAFEQLVNAHR 820 (1231)
Q Consensus 800 Gt~~eL~~~~~~~~~l~~~~~ 820 (1231)
|+|+||+++++.|+++++.+.
T Consensus 565 G~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 565 GDYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred CCHHHHHhcchHHHHHHHHhh
Confidence 999999999999999987654
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.3e-80 Score=761.96 Aligned_cols=548 Identities=23% Similarity=0.334 Sum_probs=449.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 266 LVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1231)
Q Consensus 266 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1231)
+.++..+..|++.+....+..++..+++++.|++.+.++|.+-... .......+++++.+..+++.+....-.+....+
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~-~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA-SRSTLTVLAIGLLLAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666678888888889999999999999999999999864322 222233444444455555555433333445678
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000905 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLA---IGVLFGVVGLGALP 422 (1231)
Q Consensus 346 ~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~~~~~~~~i~~~---~~~L~~~lg~~~l~ 422 (1231)
+.|+...+...+|+|++++|..+++++++||+++|+. |.++|.++... .....++.++++ ++++++.-+..+++
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~--~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTG--SILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999995 99999987652 233334444333 33344444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000905 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLR-KA 501 (1231)
Q Consensus 423 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~-~~ 501 (1231)
.++.+++.+.+..++.+.+++..++.++...++.+...|.++||+++|..+.|+.+..++++.-.+..+.-.+.... ..
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 55555555566667778888888888999999999999999999999999999998888877666655543332222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 000905 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1231)
Q Consensus 502 ~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~ 581 (1231)
.+.+...+.-....+++++|..++.++.+|.|.++++..+...+..|+..+.+.+..+++++++.+|+.++++.+..++.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 22222222333344567888888888999999999999999999999999999999999999999999999987654322
Q ss_pred hhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---
Q 000905 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1231)
Q Consensus 582 ~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--- 658 (1231)
+......+...+.|+++|++|+|++++ +++|+|+|++|++||++||||+||||||||+|+|+|+|+|++|+|.+||
T Consensus 459 ~~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl 537 (709)
T COG2274 459 DKTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 (709)
T ss_pred ccccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeH
Confidence 221122334568899999999998763 5899999999999999999999999999999999999999999999999
Q ss_pred ----------eEEEEeCCCcCCCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 ----------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 ----------~iayv~Q~~~lf~~TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
+|+||+||+.+|+|||||||.+|+|. ++|++.++++.+++++|++++|.||+|+|||+|.|||||||||
T Consensus 538 ~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 538 NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred HhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 59999999999999999999999985 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHh
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|+||||+++||+|+||||||||||+++|+.|.+ .+....++||+|+||||++++++||+|+|||+|+|+++|+|+||++
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~-~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQ-NLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHH-HHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 999999999999999999999999999999875 5778889999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHh
Q 000905 808 AGTAFEQLVNAH 819 (1231)
Q Consensus 808 ~~~~~~~l~~~~ 819 (1231)
.+|.|++++..+
T Consensus 697 ~~g~y~~l~~~q 708 (709)
T COG2274 697 QGGLYARLYQQQ 708 (709)
T ss_pred hcChHHHHHhcc
Confidence 999999998643
No 12
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-77 Score=739.76 Aligned_cols=548 Identities=23% Similarity=0.278 Sum_probs=407.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcc-CCCccH-HHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000905 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLL---LYAFVNYSN-RGEENL-QEGLSIVG---CLIITKVVESFTQRHCF 339 (1231)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~l---l~~li~~~~-~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~~~~ 339 (1231)
++.+++..++++....+..+...+.+...|.+ +..++.-.. .+++.. .....|+. ++.+...+..+++ +|+
T Consensus 652 ~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q-~~~ 730 (1228)
T KOG0055|consen 652 FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQ-HYF 730 (1228)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 33455544444444444444445555666655 334443222 221111 11111222 2223333333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCC--CCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000905 340 FGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVV 416 (1231)
Q Consensus 340 ~~~~~~~~~~r~~L~~~i~~K~l~l~~~~~~--~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~l 416 (1231)
+ ...|.++-..+|...|+|.++....+++ +++ |.+.+|+++|+..++..+.. +..+......++.++++-+..-
T Consensus 731 f--~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~ 807 (1228)
T KOG0055|consen 731 F--GIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG 807 (1228)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3566667777777889999998887665 356 99999999999988766542 3333333333333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHH-HHH
Q 000905 417 GLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKW-LSE 495 (1231)
Q Consensus 417 g~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~-l~~ 495 (1231)
+-.++.++++..++........+.+.+...+.++..++-.+...|++.|||+|+.++.|++|.+...+.-++-.+. .++
T Consensus 808 W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~ 887 (1228)
T KOG0055|consen 808 WRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKR 887 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223444444444444455566777888888888899999999999999999999999988866554422221111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000905 496 AQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1231)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~ 575 (1231)
.........+...+.-...++..++|..++.++..++..+|..+..+..-...+.+.....+.+..|+.|..++.++++.
T Consensus 888 ~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr 967 (1228)
T KOG0055|consen 888 GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDR 967 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcC
Confidence 22221112222222223344556778888888999999999887777666666677777788889999999999999986
Q ss_pred cC-CCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEE
Q 000905 576 HE-LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654 (1231)
Q Consensus 576 ~e-~~~~~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I 654 (1231)
++ .+++.......+...+.|+++||+|+||.+++.++|+|+||+|++|+.+|+||||||||||.+.+|.|+|+|++|.|
T Consensus 968 ~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V 1047 (1228)
T KOG0055|consen 968 KPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 (1228)
T ss_pred CCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 64 33322111122345688999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC-------------eEEEEeCCCcCCCCCHHHHHhcCC-CCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcC
Q 000905 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1231)
Q Consensus 655 ~v~g-------------~iayv~Q~~~lf~~TIreNI~fg~-~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~L 720 (1231)
.+|| ++|.|+|||.|||+||||||++|. ..+++++.+|++.++.|++|.+||+||||.|||+|.+|
T Consensus 1048 ~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QL 1127 (1228)
T KOG0055|consen 1048 KIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQL 1127 (1228)
T ss_pred EECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcC
Confidence 9998 599999999999999999999994 46999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEec
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G 800 (1231)
|||||||||||||+++||+||||||+|||||+++|+- +|++++....|||+|+|+||++++++||.|.|++||+|+|+|
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErv-VQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERV-VQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHH-HHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecc
Confidence 9999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred ChHHHHhcCchHHHHHHHhh
Q 000905 801 NYQELLLAGTAFEQLVNAHR 820 (1231)
Q Consensus 801 t~~eL~~~~~~~~~l~~~~~ 820 (1231)
||+||++++|.|.+|++.|.
T Consensus 1207 tH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1207 THDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred cHHHHHhCCCchHHHhhhcc
Confidence 99999999999999987553
No 13
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.2e-76 Score=745.84 Aligned_cols=544 Identities=22% Similarity=0.262 Sum_probs=425.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1231)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1231)
+++..++.+++.++...++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667888888888999999999999999999999764221 1122222333333333444444333334556788
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1231)
Q Consensus 347 ~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~ 425 (1231)
.++...++..+|+|.++++...+++.++|+++++++ |++.+.+++.. +.......+..++++++++..-++.+++.++
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 283 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVA 283 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999997 88888876432 2222222222233344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000905 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GT 504 (1231)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~-~~ 504 (1231)
.+++..++...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++..++..+...+....... ..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (686)
T TIGR03797 284 LALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTV 363 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556677778888888888899999999999999999999999887776665444433322222222121 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhh
Q 000905 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1231)
Q Consensus 505 ~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~ 584 (1231)
+...+......++.++|.+++.++.+|.|.++++..++..+..|+..++..+..+++++++++|+.++++.++..+..
T Consensus 364 ~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-- 441 (686)
T TIGR03797 364 FNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA-- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--
Confidence 112222223334455566666668999999999999999999999999999999999999999999999754322111
Q ss_pred hccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------
Q 000905 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1231)
Q Consensus 585 ~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------ 658 (1231)
........+.|+++|++|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 442 ~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 520 (686)
T TIGR03797 442 KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL 520 (686)
T ss_pred cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC
Confidence 11111224579999999999754 46899999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 659 -------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 659 -------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|+||||+|++|+|||||||.+|+|.++++++++++.|+++++++.+|+|++|.|||+|.+|||||||||+||
T Consensus 521 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 521 DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred CHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCch
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~ 811 (1231)
||+++||+|+||||||||||+++|+++.+ .++.. ++|+|+||||++.++.||+|++|++|+|++.|+|+||+++++.
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~-~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~ 677 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSE-SLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGL 677 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 99999999999999999999999999875 45554 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 000905 812 FEQLVNA 818 (1231)
Q Consensus 812 ~~~l~~~ 818 (1231)
|+++++.
T Consensus 678 y~~l~~~ 684 (686)
T TIGR03797 678 FAQLARR 684 (686)
T ss_pred HHHHHHh
Confidence 9998864
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.1e-75 Score=741.11 Aligned_cols=538 Identities=21% Similarity=0.246 Sum_probs=413.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE--NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1231)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1231)
+.+.+++.++...++.++..+..++.|++.+.++|.+..... .....+.+.++ ..++..++.....+.....+.+
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 231 (711)
T TIGR00958 155 LSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCL---LSIASSVSAGLRGGSFNYTMAR 231 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788888889999999999999999997653221 11111111111 2222222221111223455667
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1231)
Q Consensus 349 ~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1231)
+...++..+|+|.++.+...+++.++|+++|++++|++.+++.+. .+..++...++++.++++++..-+..+++.++.+
T Consensus 232 ~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~ 311 (711)
T TIGR00958 232 INLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311 (711)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 777777889999999999999999999999999999999987643 3445555556666555555544433333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000905 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI- 506 (1231)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~~~~~- 506 (1231)
++...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.++.++..++..+...+...........
T Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556677777777888888888899999999999999999998866655544333222211111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhc
Q 000905 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1231)
Q Consensus 507 ~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~ 586 (1231)
..+......++.+++.+++..+.+++|.+++++.+...+..|+..++..+..+.+++++.+|+.++++.++..++... .
T Consensus 392 ~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~ 470 (711)
T TIGR00958 392 SVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT-L 470 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-C
Confidence 111111222334445555556889999999999999999999999999999999999999999999976543221111 1
Q ss_pred cccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------
Q 000905 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1231)
Q Consensus 587 ~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------- 658 (1231)
.+.+..+.|+++|++|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 471 ~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 471 APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH 550 (711)
T ss_pred CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH
Confidence 111234579999999999865456899999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLAR 732 (1231)
+|+||||+|++|++||||||.+|++ .++++++++++.|+++++++++|+|+||.+||+|.+|||||||||+|||
T Consensus 551 ~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 551 HYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630 (711)
T ss_pred HHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHH
Confidence 5999999999999999999999976 6899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchH
Q 000905 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1231)
Q Consensus 733 Aly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~ 812 (1231)
|+++||+|+||||||||||++++++|.+ ....++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++++.|
T Consensus 631 ALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y 707 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCY 707 (711)
T ss_pred HHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCch
Confidence 9999999999999999999999998865 2345799999999999999999999999999999999999999999988
Q ss_pred HHH
Q 000905 813 EQL 815 (1231)
Q Consensus 813 ~~l 815 (1231)
+++
T Consensus 708 ~~l 710 (711)
T TIGR00958 708 KHL 710 (711)
T ss_pred Hhc
Confidence 875
No 15
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.6e-75 Score=744.05 Aligned_cols=543 Identities=19% Similarity=0.238 Sum_probs=427.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1231)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1231)
++..++.+++.+....++.++..++.++.|++++.++|.+..... ....+.+++++++..++..+......+...+++.
T Consensus 145 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (710)
T TIGR03796 145 LWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQI 223 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677788888888899999999999999999986543221 1112223333333344444444333445678888
Q ss_pred HHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1231)
Q Consensus 348 ~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~ 426 (1231)
++...++..+|+|.++++...+++.++|+++++++.| +.+.++.. .+.......+.+++.+++++..-++.+++.++.
T Consensus 224 ~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 302 (710)
T TIGR03796 224 KLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAF 302 (710)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 67777543 233333333444444444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000905 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTV 505 (1231)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~-~~~ 505 (1231)
+++...+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..+++.+...+....... ..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (710)
T TIGR03796 303 AAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVL 382 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555667777777888888889999999999999999999999999888877666655543333222222 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh--
Q 000905 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV-- 583 (1231)
Q Consensus 506 ~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~-- 583 (1231)
..........++.++|.+++.++.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 383 ~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~ 462 (710)
T TIGR03796 383 PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEE 462 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc
Confidence 222222223334555555565689999999999999999999999999999999999999999999997643321111
Q ss_pred --h-hccc-cCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-
Q 000905 584 --R-RISL-QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1231)
Q Consensus 584 --~-~~~~-~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g- 658 (1231)
. .... +...+.|+++|++|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 463 ~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 541 (710)
T TIGR03796 463 APAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI 541 (710)
T ss_pred ccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 0 0111 1224679999999999754 46899999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 ------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ------------~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
+|+||||+|++|+|||||||+++++ .++++++++++.|+++++++.+|+|++|.|||+|.|||||||
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr 621 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR 621 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence 5999999999999999999999875 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
|||+||||++++|+|+||||||||||+++|++|.+. +.. +++|+|+||||++.++.||+|++|++|+|++.|+|+||
T Consensus 622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~-l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDN-LRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL 698 (710)
T ss_pred HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHH-HHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999998764 544 58999999999999999999999999999999999999
Q ss_pred HhcCchHHHHH
Q 000905 806 LLAGTAFEQLV 816 (1231)
Q Consensus 806 ~~~~~~~~~l~ 816 (1231)
+++++.|++++
T Consensus 699 l~~~~~y~~l~ 709 (710)
T TIGR03796 699 WAVGGAYARLI 709 (710)
T ss_pred HHcCCcHHHHh
Confidence 99999998875
No 16
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.5e-74 Score=734.73 Aligned_cols=537 Identities=21% Similarity=0.274 Sum_probs=422.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1231)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1231)
.++...+.+++.+....++.++..++.++.|++++.++|.+.... .....+.+++++++..++..+......+...+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAG 215 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888889999999999999999999754221 1112222222333333344444333334456788
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1231)
Q Consensus 347 ~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~ 425 (1231)
.++...++..+|+|.++++... .+.++|++++++ +|++.+.++... +.......+.+++.+++++..-++.+++.++
T Consensus 216 ~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 293 (694)
T TIGR03375 216 KKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8999999999999999999887 678999999999 799999886542 2222222222333344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000905 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-T 504 (1231)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~~-~ 504 (1231)
.+++..++...+.++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+........ .
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555667778888888888999999999999999999999999999988887776665544333332222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhh
Q 000905 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1231)
Q Consensus 505 ~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~ 584 (1231)
+...+..+...+++++|..++.++.+|.|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..+....
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 453 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR 453 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 11111112223344555555556899999999999999999999999999999999999999999999976543221111
Q ss_pred hccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------
Q 000905 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1231)
Q Consensus 585 ~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------ 658 (1231)
....+...+.|+++|++|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 454 ~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~ 532 (694)
T TIGR03375 454 FLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI 532 (694)
T ss_pred CCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC
Confidence 11111234579999999999743 46799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 659 -------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 -------~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
+|+||||+|++|+|||+|||.+|+| .++++++++++.|+++++++.+|+|++|.|||+|.+|||||||||+|
T Consensus 533 ~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlal 612 (694)
T TIGR03375 533 DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL 612 (694)
T ss_pred CHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHH
Confidence 5999999999999999999999987 79999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|||++++|+|+||||||||||++++++|. +.+.+..+++|+|+||||+++++.||+|++|++|+|+|+|+|+||+++
T Consensus 613 ARall~~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 613 ARALLRDPPILLLDEPTSAMDNRSEERFK-DRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999999986 567777789999999999999999999999999999999999999864
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.9e-74 Score=731.55 Aligned_cols=542 Identities=24% Similarity=0.282 Sum_probs=418.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1231)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1231)
..++.+++.++...++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRL 227 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888889999999999999999998654322 1111122222233333334333333334456788889
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1231)
Q Consensus 350 r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1231)
...++..+|+|.++++...+++.++|+++++++ |.+.+.++... ........+.+++.++++++.-++.+++.++.++
T Consensus 228 ~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 228 SIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 89988876432 2222222222333333344433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000905 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIY 507 (1231)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~-~~~~~~ 507 (1231)
+...+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+...... ...+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455567777888888888889999999999999999999999988877766554433322211111111 111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhcc
Q 000905 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1231)
Q Consensus 508 ~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~ 587 (1231)
........+++++|..++.++.+|+|.++++..+...+..|+..+...+..+.+++++.+|+.++++.++..+.......
T Consensus 387 ~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~ 466 (708)
T TIGR01193 387 VTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTE 466 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccC
Confidence 11112223344556666666899999999999999999999999999999999999999999999975432211111011
Q ss_pred ccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------
Q 000905 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1231)
Q Consensus 588 ~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------- 658 (1231)
.+...+.|+++|++|+|++ ++++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+||
T Consensus 467 ~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 467 LNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred CCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHH
Confidence 1223467999999999963 35799999999999999999999999999999999999999999999998
Q ss_pred ----eEEEEeCCCcCCCCCHHHHHhcC-CC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHH
Q 000905 659 ----SIAYVSQTSWIQSGSIRDNILYG-KP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1231)
Q Consensus 659 ----~iayv~Q~~~lf~~TIreNI~fg-~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLAR 732 (1231)
+|+||||+|+||+|||||||.+| ++ .++++++++++.++++++++.+|+|++|.|||+|.+|||||||||+|||
T Consensus 545 ~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 59999999999999999999999 34 6899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchH
Q 000905 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1231)
Q Consensus 733 Aly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~ 812 (1231)
|++++|+|+|||||||+||+++++++.+ .+.. ++++|+|+||||++.++.||+|++|++|++++.|+|+||+++++.|
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~-~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y 702 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVN-NLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFY 702 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHH-HHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcH
Confidence 9999999999999999999999999865 4555 4789999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 000905 813 EQLVN 817 (1231)
Q Consensus 813 ~~l~~ 817 (1231)
+++++
T Consensus 703 ~~l~~ 707 (708)
T TIGR01193 703 ASLIH 707 (708)
T ss_pred HHHhh
Confidence 98864
No 18
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.6e-74 Score=712.14 Aligned_cols=537 Identities=24% Similarity=0.327 Sum_probs=410.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1231)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~ 354 (1231)
++ .+....++.++..++....|.++..+++..............+.+++. ++..+......+.....+.++...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLA---LLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 777788888888999999999999998876511111111111111111 12222222223334456688888888
Q ss_pred HHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWS-LALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433 (1231)
Q Consensus 355 ~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~~~~-~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~ 433 (1231)
..+|+|.++++...++++++|++++++++|++.+............ .++.++..+++++..-...++..+++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 168 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALV 168 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887654322222 233333333333322221222222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000905 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWL-SEAQLRKAYGTVIYWMSPT 512 (1231)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l-~~~~~~~~~~~~~~~~~~~ 512 (1231)
...+.++.++..++..+..++..+.+.|.++|++++|.|+.|+...++.++..+...+.. +..................
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (567)
T COG1132 169 LSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334454556777777778888899999999999999999999865444433332222211 1111111111222233333
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCC
Q 000905 513 IISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1231)
Q Consensus 513 ~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~ 592 (1231)
....+.+.+...+..+.+++|.+.+++.+...+..|+..+...+..+.++..|.+|+.++++.++...+.... .....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~ 326 (567)
T COG1132 249 GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTI 326 (567)
T ss_pred HHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCC
Confidence 3444555555555567899999999999999999999999999999999999999999999864421111111 12234
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------e
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ 659 (1231)
+.|+|+|++|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+|| +
T Consensus 327 ~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 327 GSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred CeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 67999999999975 35899999999999999999999999999999999999999999999988 5
Q ss_pred EEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC
Q 000905 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1231)
Q Consensus 660 iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1231)
||||||+|+||++||+|||.+|+| .++|+++++++.++++++++.+|+|+||.|||+|.+|||||||||+||||+++||
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998 5999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~~~ 818 (1231)
+|++||||||+||+++|+.|. +.+....++||+|+|+||++++++||+|+|||+|+|+|.|+|+||++++|.|+++++.
T Consensus 485 ~ILILDEaTSalD~~tE~~I~-~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~ 563 (567)
T COG1132 485 PILILDEATSALDTETEALIQ-DALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQA 563 (567)
T ss_pred CEEEEeccccccCHHhHHHHH-HHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 999999999999999999875 5676677899999999999999999999999999999999999999999999999976
Q ss_pred hh
Q 000905 819 HR 820 (1231)
Q Consensus 819 ~~ 820 (1231)
+.
T Consensus 564 ~~ 565 (567)
T COG1132 564 QG 565 (567)
T ss_pred hh
Confidence 54
No 19
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.1e-73 Score=711.99 Aligned_cols=546 Identities=17% Similarity=0.219 Sum_probs=417.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1231)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1231)
+.+++.+++.++...++.++..+...+.|.+++.+++.......... ...++..+++..++..+......+...+++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 95 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSV-LKWMPLVVIGLMILRGITSFISSYCISWVSGK 95 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777766677777777778889999988886543221111 11111112222233333322222345677788
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1231)
Q Consensus 349 ~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1231)
+...++..+|+|.++++...+++.+.|++++++++|++.+.+... .+..++..++.+++.++++++..++.+++.++++
T Consensus 96 ~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 175 (582)
T PRK11176 96 VVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIA 175 (582)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999987543 2334445555555555555554444333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000905 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVI 506 (1231)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~-~~~~ 506 (1231)
++..++...+.+..++..++.++..++..+...|.++|+++||.++.|+.+.++.++..++-.+...+....... ....
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (582)
T PRK11176 176 PIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPII 255 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455667777777888888888889999999999999999999877666654433322222221111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhc
Q 000905 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1231)
Q Consensus 507 ~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~ 586 (1231)
.........++.+++...+..+.+++|.+.++..++..+..|+..+...+..+.+++.+.+|+.++++.++.++... .
T Consensus 256 ~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~ 333 (582)
T PRK11176 256 QLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--R 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--c
Confidence 11122222233444444444578999999988888888999999999999999999999999999987554322111 1
Q ss_pred cccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------
Q 000905 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1231)
Q Consensus 587 ~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------- 658 (1231)
..+...+.|+++|++|+|+++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 334 ~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 334 VIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL 412 (582)
T ss_pred CCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH
Confidence 111223569999999999753 46899999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~--~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
.|+||||+|++|++||||||++|++ +++++++++++.++++++++.||+|++|.+||+|.+|||||||||+||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492 (582)
T ss_pred HHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHH
Confidence 4999999999999999999999864 799999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCch
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~ 811 (1231)
||+|++|+|+||||||||||++++++++ +.+....+++|+|+||||++.++.||+|++|++|+|+|.|+|+||+++++.
T Consensus 493 Rall~~~~ililDEptsaLD~~t~~~i~-~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~ 571 (582)
T PRK11176 493 RALLRDSPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGV 571 (582)
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCh
Confidence 9999999999999999999999999986 456666689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 000905 812 FEQLVNAH 819 (1231)
Q Consensus 812 ~~~l~~~~ 819 (1231)
|+++++.+
T Consensus 572 y~~l~~~~ 579 (582)
T PRK11176 572 YAQLHKMQ 579 (582)
T ss_pred HHHHHHHH
Confidence 99998654
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-72 Score=706.30 Aligned_cols=543 Identities=18% Similarity=0.257 Sum_probs=413.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1231)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1231)
.+.+.+++.++...++.++..++..+.|+++..++|..... .........+++++++..++..+......+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777788888888889999999999999999865322 11111111122222333333344333333445678888
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1231)
Q Consensus 349 ~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1231)
+...++..+|+|.++++...+++.++|+++|++++|++.+.+.... +..+......+++.+++++...++..++.++++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~ 175 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIF 175 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999886443 222333333333333333332222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHH
Q 000905 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWL-SEAQLRKAY-GTV 505 (1231)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l-~~~~~~~~~-~~~ 505 (1231)
++..++.....++.++..++..+..++..+...|.++|+++||.|+.|+.+.++..+..++..+.. +........ ...
T Consensus 176 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (592)
T PRK10790 176 PAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPL 255 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223344455556666666677777788899999999999999999988877766544433221 111111100 111
Q ss_pred HHHHHHHH-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhh
Q 000905 506 IYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1231)
Q Consensus 506 ~~~~~~~~-~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~ 584 (1231)
......++ +.++.+.++ ...+.++.|.+++++.+...+..|+..++..+..+.+++++.+|+.++++.++.+... .
T Consensus 256 ~~~~~~~~~~~~~~~~~~--~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~ 332 (592)
T PRK10790 256 LSLFSALILCGLLMLFGF--SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-D 332 (592)
T ss_pred HHHHHHHHHHHHHHHHHH--HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-C
Confidence 11111111 111122233 2347899999999999999999999999999999999999999999999754332111 1
Q ss_pred hccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------
Q 000905 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1231)
Q Consensus 585 ~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------ 658 (1231)
......+.|+++|++|+|++ ++++|+|+||++++||++||||+||||||||+++|+|+++|++|+|.+||
T Consensus 333 --~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~ 408 (592)
T PRK10790 333 --DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL 408 (592)
T ss_pred --ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhC
Confidence 11123457999999999974 35799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 659 -------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 659 -------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|+||||+|++|++||||||.+|++.++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||
T Consensus 409 ~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA 488 (592)
T PRK10790 409 SHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA 488 (592)
T ss_pred CHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 4999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCch
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~ 811 (1231)
||+|+||+|+|||||||+||++++++|. +.++...+++|+|+||||++.++.||+|++|++|++++.|+|+||+++++.
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~-~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~ 567 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQ-QALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGR 567 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCH
Confidence 9999999999999999999999999985 567777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 000905 812 FEQLVNAHR 820 (1231)
Q Consensus 812 ~~~l~~~~~ 820 (1231)
|+++++.+.
T Consensus 568 y~~l~~~~~ 576 (592)
T PRK10790 568 YWQMYQLQL 576 (592)
T ss_pred HHHHHHHHh
Confidence 999987654
No 21
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.1e-72 Score=698.54 Aligned_cols=542 Identities=21% Similarity=0.244 Sum_probs=410.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEE-N-LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1231)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1231)
+.+.+++.++++.++.++..++....|.+++.++|... .+.. . ....+..++++++..++..+......+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888889999999999999999998542 2211 0 0111111112222233333333333345567888
Q ss_pred HHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1231)
Q Consensus 348 ~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~ 426 (1231)
++...++..+|+|.++++...+++.++|++++++++|++.++++... +..+....+.++++++++++.-...++..+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986543 33344444444444444443333222222111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000905 427 FLICG-LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGT 504 (1231)
Q Consensus 427 ~~~~~-~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~-~~~ 504 (1231)
+.+.. .+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++..+...+...... ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (574)
T PRK11160 170 LLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQA 249 (574)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 2233445666777777788888888999999999999999999988777665544432222111111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q 000905 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS-MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1231)
Q Consensus 505 ~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~-l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~ 583 (1231)
+...+....+.++.+++...+ .+.++.|.+++++.+... ...|+..++..+..+.++.+|.+|+.++++.++..+.+.
T Consensus 250 ~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~ 328 (574)
T PRK11160 250 LMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPT 328 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 222222222333445555544 477899988877665433 356888899999999999999999999997543211111
Q ss_pred hhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----
Q 000905 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1231)
Q Consensus 584 ~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----- 658 (1231)
. .......+.|+++|++|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.++|
T Consensus 329 ~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 329 T-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred c-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 1 1111234579999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 --------~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
.|+||||+|++|++||+|||.+|++ .++++++++++.++++++++. |+|+||.|||+|.+|||||||||+
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 3999999999999999999999986 689999999999999999999 999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
||||+++||+|+|||||||+||++++++|. +.+....++||+|+||||++.++.||+|++|++|++++.|+|+||++++
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~-~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQIL-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 999999999999999999999999999876 5677777899999999999999999999999999999999999999999
Q ss_pred chHHHHHH
Q 000905 810 TAFEQLVN 817 (1231)
Q Consensus 810 ~~~~~l~~ 817 (1231)
|.|+++++
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 99999875
No 22
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-72 Score=653.40 Aligned_cols=529 Identities=23% Similarity=0.311 Sum_probs=413.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 282 IAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1231)
Q Consensus 282 ~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~i~~K~ 361 (1231)
..++.++..++...+-.++...++-.-..+. ....+.++++++++.+++.++...--....+.+.++|..++..+++|.
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666555554322221 222334444555555666665544445567899999999999999999
Q ss_pred HcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWS---LALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1231)
Q Consensus 362 l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~---~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~ 437 (1231)
.++++.+.++.++|+..+++..-++.+..++. |+..... .|+-++++++...|.-+. +-++.+.++.+....+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aal---Illit~PlIPlfMilv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAAL---ILLITAPLIPLFMILV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887654 3333322 233333333333333322 2222222222233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE----KFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1231)
Q Consensus 438 ~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~----~f~~~i~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~ 513 (1231)
.+..++..+++++....-....-+.|+|+.++|.|+..+ ++.+.-++.|+..|+.+|..........++...+ +
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls--i 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS--I 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 666777778888888888888999999999999998754 4555667788888888876655444333322222 2
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhh-ccccCCC
Q 000905 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-ISLQKSD 592 (1231)
Q Consensus 514 ~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~-~~~~~~~ 592 (1231)
..++.+.+..+.+.++++....+.++.+.--+..|++.+...++.-.++..+.+++..|++.+....+.... .....+.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 223455666666535899988888888888899999999999999999999999999999876543322211 1111223
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------e
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ 659 (1231)
..++.+|++|.|+++ +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+|| +
T Consensus 319 ~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 345566999999864 3899999999999999999999999999999999999999999999998 5
Q ss_pred EEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC
Q 000905 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1231)
Q Consensus 660 iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1231)
++||||+|+||+|||||||++|++ .++|++.++++.++|.++++. |+|+||+|||+|.+|||||+||++||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998 589999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~~~ 818 (1231)
++||||||||+||+++|+.|. +.+....++||+|+||||++.+.+||+|+|||+|+++|+|+|+||.+++|.|++++++
T Consensus 476 ~l~llDEpTA~LD~etE~~i~-~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIIL-QALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHH-HHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 999999999999999999875 6788888999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 000905 819 HR 820 (1231)
Q Consensus 819 ~~ 820 (1231)
++
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 65
No 23
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.9e-72 Score=699.63 Aligned_cols=545 Identities=19% Similarity=0.260 Sum_probs=427.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1231)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1231)
+.+.+.+++.+++..++.++..++....|.++..+++...... .....+.+++++++..++..+......+...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNK 84 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888888888999999999999999988887543221 111111122222223333333332333445678888
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1231)
Q Consensus 349 ~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1231)
+...++..+|+|.++.+...+++.+.|+++++++.|++++.++.. .+..++...+.+++++++++..-++.+++.++.+
T Consensus 85 ~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~ 164 (571)
T TIGR02203 85 VVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVML 164 (571)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999987654 3444444455555555555554443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000905 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVI 506 (1231)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~-~~~~ 506 (1231)
++...+...+.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.++.++..++..+...+....... ..+.
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (571)
T TIGR02203 165 PVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPIT 244 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677778888888899999999999999999999999999887776666555443322222111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhc
Q 000905 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1231)
Q Consensus 507 ~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~ 586 (1231)
.........++.++|..++.++.+|+|.++++..++..+..|+..+...+..+.+++++.+|+.++++.++..+... .
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~ 322 (571)
T TIGR02203 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--R 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--C
Confidence 11222223334455555555689999999999999999999999999999999999999999999997544322111 1
Q ss_pred cccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------
Q 000905 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1231)
Q Consensus 587 ~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------- 658 (1231)
......+.|+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 323 ~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 323 AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401 (571)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH
Confidence 111234579999999999754 45899999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~--~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|+||||+|++|+|||||||.++++ .++++++++++.|+++++++.+|+|+||+|||+|.+|||||||||+||
T Consensus 402 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481 (571)
T ss_pred HHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 4999999999999999999999964 799999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCch
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~ 811 (1231)
||++++|+|+|||||||+||++++++|. +.+....++||+|+||||++.++.||+|++|++|++++.|+|+|++++++.
T Consensus 482 Rall~~~~illLDEpts~LD~~~~~~i~-~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~ 560 (571)
T TIGR02203 482 RALLKDAPILILDEATSALDNESERLVQ-AALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGL 560 (571)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCH
Confidence 9999999999999999999999999986 456677789999999999999999999999999999999999999999889
Q ss_pred HHHHHHH
Q 000905 812 FEQLVNA 818 (1231)
Q Consensus 812 ~~~l~~~ 818 (1231)
|+++++.
T Consensus 561 ~~~~~~~ 567 (571)
T TIGR02203 561 YAQLHNM 567 (571)
T ss_pred HHHHHHH
Confidence 9887654
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3e-71 Score=692.13 Aligned_cols=548 Identities=20% Similarity=0.266 Sum_probs=419.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1231)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1231)
++.+++.+++.+.+..++.++..++.++.|++++.++|... +.+.. ....+++++++..++..+......+...+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSG--LLNRYFAFLLVVALVLALGTAARFYLVTWLG 86 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888999999999999999998733 22111 1111121222222222332333334556788
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1231)
Q Consensus 347 ~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~ 425 (1231)
.++...++..+|+|.++++...+++.+.|++++++++|++.+.++.. .+..++...+.++.++++++...++.+++.++
T Consensus 87 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 166 (576)
T TIGR02204 87 ERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL 166 (576)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 89999999999999999999988889999999999999999987643 23333334444444444443333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000905 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ-LRKAYGT 504 (1231)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~-~~~~~~~ 504 (1231)
.+++...+...+.+..++..++.++..++..+.+.|.++|+++||.+++|+.+.++.++..++..+...+.. .......
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (576)
T TIGR02204 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTA 246 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222333456677777788888888889999999999999999999999877766655444333222211 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhh
Q 000905 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1231)
Q Consensus 505 ~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~ 584 (1231)
....+......+++++|...+..+.+|.|.++++..+...+..|+..++..+..+.+++++++|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 11111112222334445554545789999999999999999999999999999999999999999999975432111111
Q ss_pred hc-cccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----
Q 000905 585 RI-SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1231)
Q Consensus 585 ~~-~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----- 658 (1231)
.. ...+..+.|+++|++|+|++++++++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 327 PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406 (576)
T ss_pred CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 11 111123569999999999754346899999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 --------~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
.|+||||+|++|++||||||.+|+| .++++++++++.+++.++++.+|+|++|.+||+|.+|||||||||+
T Consensus 407 ~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 407 LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred cCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 5999999999999999999999986 5889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
||||++++|+|+|||||||+||+++++.+. +.++...+++|+|+||||++.++.+|+|++|++|++++.|+|+++++++
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~-~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~ 565 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQ-QALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcC
Confidence 999999999999999999999999999876 4677777899999999999999999999999999999999999999999
Q ss_pred chHHHHHHH
Q 000905 810 TAFEQLVNA 818 (1231)
Q Consensus 810 ~~~~~l~~~ 818 (1231)
+.|+++++.
T Consensus 566 ~~~~~l~~~ 574 (576)
T TIGR02204 566 GLYARLARL 574 (576)
T ss_pred ChHHHHHhh
Confidence 999988753
No 25
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.5e-71 Score=703.36 Aligned_cols=546 Identities=21% Similarity=0.239 Sum_probs=424.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1231)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1231)
++..++.+++.+....++.++..++.++.|++++.++|.+.... +....+.+++++++..++..+......+...+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (694)
T TIGR01846 130 FIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTS 208 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888889999999999999999999754221 11112222233333333444443333344567888
Q ss_pred HHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1231)
Q Consensus 348 ~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~ 426 (1231)
++...++..+|+|.++++...+++.++|++++++ +|++.+.++.. .+.......+..++.+++++..-++.+++.++.
T Consensus 209 ~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 287 (694)
T TIGR01846 209 RIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGS 287 (694)
T ss_pred HHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 69999988643 222222222223333334444333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000905 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTV 505 (1231)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~-~~~ 505 (1231)
+++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++..++..+...+....... ...
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR01846 288 LVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQA 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455666677777778888888999999999999999999999887777665544433322222211111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhh
Q 000905 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1231)
Q Consensus 506 ~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~ 585 (1231)
...+......++.++|.+++..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+.. ..
T Consensus 368 ~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~ 446 (694)
T TIGR01846 368 IELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GL 446 (694)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CC
Confidence 22222222334455666666568999999999999999999999999999999999999999999999765432211 11
Q ss_pred ccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------
Q 000905 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1231)
Q Consensus 586 ~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------- 658 (1231)
...+...+.|+++|++|+|+++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 447 ~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~ 525 (694)
T TIGR01846 447 AALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD 525 (694)
T ss_pred CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC
Confidence 1112234679999999999754 35799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|+||||+|++|++||+|||.++++ .++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+||
T Consensus 526 ~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lA 605 (694)
T TIGR01846 526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIA 605 (694)
T ss_pred HHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHH
Confidence 4999999999999999999999876 689999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCch
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~ 811 (1231)
||++++|+|+|||||||+||+++++++.+ .+....+++|+|+||||++.++.||+|++|++|+|++.|+|+||+++++.
T Consensus 606 Rall~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~ 684 (694)
T TIGR01846 606 RALVGNPRILIFDEATSALDYESEALIMR-NMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGL 684 (694)
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHH-HHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCCh
Confidence 99999999999999999999999999864 56676789999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 000905 812 FEQLVNA 818 (1231)
Q Consensus 812 ~~~l~~~ 818 (1231)
|+++++.
T Consensus 685 y~~l~~~ 691 (694)
T TIGR01846 685 YARLWQQ 691 (694)
T ss_pred HHHHHHh
Confidence 9999864
No 26
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.2e-71 Score=689.37 Aligned_cols=542 Identities=18% Similarity=0.247 Sum_probs=410.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1231)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 350 (1231)
+.+.+++.+.+..++.++..++.++.|+++..++|.+.... .......+.++ ..++..+..........++..+++
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFPLLAAWAG---FGLFNIIAGVLVARHADRLAHRRR 88 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777888888889999999999999998765322 21111111111 112222222222234567778888
Q ss_pred HHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1231)
Q Consensus 351 ~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1231)
..++..+|+|.++++...+++.+.|+++++++.|++.+.+... .+.......+..++.+++++..-++.+++.++++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l 168 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIV 168 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999998876432 222222222222222222233222222222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000905 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA-QLRKAYGTVIYW 508 (1231)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~-~~~~~~~~~~~~ 508 (1231)
...+...+.++.++.+++.++..++..+...|.++|+++||.|+.|+.+.++..+.-++..+...+. ............
T Consensus 169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK13657 169 YTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRA 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777777888888889999999999999999999999876655544333222211111 111111111112
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccc
Q 000905 509 MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1231)
Q Consensus 509 ~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~ 588 (1231)
.......++.+++.+++.++.+|+|.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.++..+........
T Consensus 249 ~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 328 (588)
T PRK13657 249 ASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL 328 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc
Confidence 22222333444455555568999999999999999999999999999999999999999999998754322111111111
Q ss_pred cCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------
Q 000905 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1231)
Q Consensus 589 ~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------- 658 (1231)
+...+.|+++|++|+|+++ +++|+|+|++++|||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 329 ~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 329 GRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS 406 (588)
T ss_pred CCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHH
Confidence 1223569999999999742 4799999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 659 ---~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
+|+||||+|++|+|||||||++++| .++++++++++.|+++++++.+|+|++|.+||+|.+|||||||||+||||+
T Consensus 407 ~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 407 LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred HHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999999976 689999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHH
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~ 814 (1231)
+++|+|+|||||||+||+++++.|.+ .+....++||+|+||||++.++.||+|++|++|++++.|+|+|++++++.|.+
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~-~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~ 565 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKA-ALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAA 565 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHH
Confidence 99999999999999999999999864 56666689999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 000905 815 LVNAH 819 (1231)
Q Consensus 815 l~~~~ 819 (1231)
+++.+
T Consensus 566 l~~~~ 570 (588)
T PRK13657 566 LLRAQ 570 (588)
T ss_pred HHHHh
Confidence 88754
No 27
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-71 Score=739.54 Aligned_cols=544 Identities=19% Similarity=0.214 Sum_probs=396.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1231)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~ 351 (1231)
++.+++.++++.++.++..++..+.|+++..+++...........+..+.+.+++..++..++.....+...+++.++..
T Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~ 899 (1466)
T PTZ00265 820 IFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEK 899 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566668888888888888888999999999884322111011111122222222222222222222344678888888
Q ss_pred HHHHHHHHHHHcCCcccCCC--CCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 352 ALMVAVYQKQLKLSSLGRKK--HSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1231)
Q Consensus 352 ~L~~~i~~K~l~l~~~~~~~--~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1231)
.++..+|+|.++++..++++ +++|++++++++|++.+.++... +..+...++.+++++++++..-...++ ++++
T Consensus 900 ~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l---~~~~ 976 (1466)
T PTZ00265 900 TMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAA---VLTG 976 (1466)
T ss_pred HHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 89999999999999998865 88999999999999999875432 333333334344443333322222111 1111
Q ss_pred HHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHH
Q 000905 429 ICGLLNVPFAKILQKCQ-SEF-----------------MIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEF 490 (1231)
Q Consensus 429 ~~~~~~~~~~~~~~~~~-~~~-----------------~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~ 490 (1231)
+..++...+.++.+... ++. .+..++....++|.++||++||.|+.|+.+.++.++.-+...
T Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~ 1056 (1466)
T PTZ00265 977 TYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSN 1056 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 11122222222222111 111 111234466899999999999999999988877765444333
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 491 KWLSEAQLRKA-YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1231)
Q Consensus 491 ~~l~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri 569 (1231)
+...+...... ...+......+...++.++|..++..+.++++.+++++.++.....++..+...+..+.+++++.+|+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri 1136 (1466)
T PTZ00265 1057 KGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKY 1136 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111111 11122222222234455666667767899999998887666555567888899999999999999999
Q ss_pred HHHhcccC-CCCchhhhcc---ccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhC
Q 000905 570 NAFLLDHE-LNNDDVRRIS---LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1231)
Q Consensus 570 ~~fl~~~e-~~~~~~~~~~---~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg 645 (1231)
.++++.++ .+..+..... .....+.|+|+||+|+|+++++.++|+|+||+|++|+++||||+||||||||+++|+|
T Consensus 1137 ~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r 1216 (1466)
T PTZ00265 1137 YPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR 1216 (1466)
T ss_pred HHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 99997542 2111101110 1123467999999999986545689999999999999999999999999999999999
Q ss_pred CCcC------------------------------------------------------CCcEEEEcC-------------
Q 000905 646 EIPK------------------------------------------------------ISGTVNLYG------------- 658 (1231)
Q Consensus 646 ~~~~------------------------------------------------------~~G~I~v~g------------- 658 (1231)
+|+| ++|+|.+||
T Consensus 1217 ~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~ 1296 (1466)
T PTZ00265 1217 FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRN 1296 (1466)
T ss_pred hCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHh
Confidence 9998 699999998
Q ss_pred eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 659 SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 659 ~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
+||||||+|+||+|||||||.+|+| .+++++++|++.++++++|+.||+|++|.|||+|.+||||||||||||||+++|
T Consensus 1297 ~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~ 1376 (1466)
T PTZ00265 1297 LFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLRE 1376 (1466)
T ss_pred hccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999976 689999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchhhccCeEEEEeC----CeEe-EecChHHHHh-cC
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSEVDRILVLEG----GQIT-QSGNYQELLL-AG 809 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l~~aD~Iivl~~----G~I~-~~Gt~~eL~~-~~ 809 (1231)
|+||||||||||||+++|+.|. +.+... .++||+|+||||++++++||+|+||++ |+++ |+|+|+||++ ++
T Consensus 1377 p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~ 1455 (1466)
T PTZ00265 1377 PKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQD 1455 (1466)
T ss_pred CCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCC
Confidence 9999999999999999999875 567666 369999999999999999999999999 9955 8999999998 58
Q ss_pred chHHHHHHHh
Q 000905 810 TAFEQLVNAH 819 (1231)
Q Consensus 810 ~~~~~l~~~~ 819 (1231)
|.|+++++.+
T Consensus 1456 g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1456 GVYKKYVKLA 1465 (1466)
T ss_pred ChHHHHHhhc
Confidence 9999998643
No 28
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=7.4e-71 Score=681.07 Aligned_cols=506 Identities=19% Similarity=0.241 Sum_probs=376.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1231)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1231)
.+.+.+++.++...++.++..++..+.|++++.++|........... +.++.++++..++..+......+...+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYL-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRS 84 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888888999999999999999865432211111 11111111122223333222233445778888
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1231)
Q Consensus 350 r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1231)
...++..+|+|.++++...+++.++|++++++++|++++.+.... +..+....+.+++++++++..-+..+++.++.++
T Consensus 85 ~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 164 (529)
T TIGR02868 85 LGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLL 164 (529)
T ss_pred HHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999886543 3333333344444444444333332222222222
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000905 429 ICGLLNVPF-AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT-VI 506 (1231)
Q Consensus 429 ~~~~~~~~~-~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~~~-~~ 506 (1231)
++.++...+ .+..++..++..+..++..+.+.|.++|+++||.|++|+.+.++.++..++..+...+......... +.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 165 LAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 2333445566667778889999999999999999999998888777655543333222222222111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhh-
Q 000905 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR- 585 (1231)
Q Consensus 507 ~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~- 585 (1231)
.........++.+++...+.++.+++|.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.++..++....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 1111122233344455555557899999999999999999999999999999999999999999999755422111000
Q ss_pred -ccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------
Q 000905 586 -ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1231)
Q Consensus 586 -~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------ 658 (1231)
.......+.|+++|++|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred CcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence 0011123569999999999753 4699999999999999999999999999999999999999999999999
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|+||||+|+||+|||||||++|+| .++|+++++++.|+++++++.||+|+||+|||+|.+|||||||||+||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 7999999999999999999999986 699999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l 779 (1231)
||+++||+|+||||||||||+++|+.|.+ .+....+++|+|+||||+
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~-~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLE-DLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999864 566777899999999995
No 29
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.3e-70 Score=678.79 Aligned_cols=531 Identities=21% Similarity=0.277 Sum_probs=402.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 000905 286 ALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLS 365 (1231)
Q Consensus 286 ~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~i~~K~l~l~ 365 (1231)
.++..++..+.|++++.++|............+.+++++++..++..+......+...+.+.++...++..+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556677889999999999764322111122223333333333333333222334456788888899999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGL-GALPGLVLFLICGLLNVPFAKILQK 443 (1231)
Q Consensus 366 ~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~-~~l~gl~~~~~~~~~~~~~~~~~~~ 443 (1231)
...+++.++|++++++++|++.+..... .+..++..++..++++++++..++| .+++.++++++...+...+.++.++
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976532 2333444433333333333222332 2233333333333344455666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLRKAYGTVIYWMSPTIISSVIFLGC 522 (1231)
Q Consensus 444 ~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 522 (1231)
..++..+..++..+.+.|.++|+++||.+++|+.+.++.++..++..+...+ ....................++.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777788999999999999999999988766665433322221111 111111111111111122223344555
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEeeeE
Q 000905 523 ALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNF 602 (1231)
Q Consensus 523 ~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~I~~~~~sf 602 (1231)
+++.++.+|+|.+++++.+...+..|+..++..+..+.+++++.+|+.++++.++..++.. ...+...+.|+++|++|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEEEEEEE
Confidence 5555688999999999999999999999999999999999999999999997543221111 11112245799999999
Q ss_pred eeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEEEEeCCCcC
Q 000905 603 SWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI 669 (1231)
Q Consensus 603 ~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~iayv~Q~~~l 669 (1231)
+|+.+ ++++|+|+||+++||++++|+||||||||||+++|+|+++|++|+|.++| .++||||+|++
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99753 35799999999999999999999999999999999999999999999987 49999999999
Q ss_pred CCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000905 670 QSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1231)
Q Consensus 670 f~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~S 748 (1231)
|++||+|||++|++ .++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||++++|+|+|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999975 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHHHHHhh
Q 000905 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1231)
Q Consensus 749 alD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~~~~~ 820 (1231)
+||+++++++.+ .++...+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++.|+++++.+.
T Consensus 481 ~LD~~~~~~i~~-~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 481 AVDGRTEHQILH-NLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred cCCHHHHHHHHH-HHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 999999999865 56666789999999999999999999999999999999999999999999999887543
No 30
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.8e-69 Score=671.51 Aligned_cols=542 Identities=18% Similarity=0.228 Sum_probs=413.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1231)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 350 (1231)
+++.+++.++...++.++..++..+.|++++.++|.....+.... +++..++..++..+..........++..+++
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLP----TLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888889999999999999999999997543221111 1111111222233322222334567888899
Q ss_pred HHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1231)
Q Consensus 351 ~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1231)
..++..+|+|.++++...+++.++|++++++++|++.+.+... .+......++.+++.+++++..-+..++..++++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 168 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGIL 168 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987543 233333333444333333333322222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000905 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYW 508 (1231)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~-~~~~~~ 508 (1231)
...+...+.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++.++..++-.+...+....... ......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (585)
T TIGR01192 169 YILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRM 248 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666777777777788889999999999999999998877666554333221111111111111 111111
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccc
Q 000905 509 MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1231)
Q Consensus 509 ~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~ 588 (1231)
.......++.++|.+++.++.++.|.+++++.+...+..|+..+...+..+.+++++.+|+.++++.++..++.......
T Consensus 249 ~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 328 (585)
T TIGR01192 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPEL 328 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCC
Confidence 12222233445555555568899999999999999999999999999999999999999999998754321111111111
Q ss_pred cCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------
Q 000905 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1231)
Q Consensus 589 ~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------- 658 (1231)
+...+.++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 329 ~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 329 PNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES 406 (585)
T ss_pred CCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH
Confidence 1223569999999999743 4689999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 659 ---~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
.++||||+|++|++||+|||.+|.+ .++++++++++.+++++++..+|+|++|.+||+|.+|||||||||+||||+
T Consensus 407 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 407 LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999999976 588999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHH
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~ 814 (1231)
+++|+++|||||||+||+++++.+. +.+....+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++.|++
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~-~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~ 565 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVK-NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYK 565 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHH-HHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHH
Confidence 9999999999999999999999875 567777789999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 000905 815 LVNAH 819 (1231)
Q Consensus 815 l~~~~ 819 (1231)
+++.+
T Consensus 566 l~~~~ 570 (585)
T TIGR01192 566 LLRRS 570 (585)
T ss_pred HHHhC
Confidence 98754
No 31
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-72 Score=622.65 Aligned_cols=530 Identities=20% Similarity=0.285 Sum_probs=386.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCccHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 283 AICALLRTIAVVVGPLLLYAFVNYSNRGEENLQ-EGLSIVGCLIITKVV--ESFTQRHCFFGSRRSGMRMRSALMVAVYQ 359 (1231)
Q Consensus 283 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~-~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~r~~L~~~i~~ 359 (1231)
.++..+.-++....|.+.+.+++.+..+....+ ..+.++++-++-... ..+..+.-.+..-++..-...++-..+|+
T Consensus 221 l~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfr 300 (790)
T KOG0056|consen 221 LFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFR 300 (790)
T ss_pred HHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHH
Confidence 344445556677889999999987764332222 222333322221110 01111110011112222233345557899
Q ss_pred HHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 000905 360 KQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLL---NV 435 (1231)
Q Consensus 360 K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~---~~ 435 (1231)
|...||..++-++.+||++..|......+. +..+ +..+-...+.+.++++ |..+......|+++++.+... ..
T Consensus 301 Hlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v--YF~~~Fn~wFgLIVfl~m~lY~~~Ti 377 (790)
T KOG0056|consen 301 HLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV--YFFIKFNIWFGLIVFLMMLLYCYVTI 377 (790)
T ss_pred HHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh--hhhhhHhHHHHHHHHHHHHHHhheee
Confidence 999999999889999999988875544443 2222 2233233444554443 333333334455443332211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE----KFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSP 511 (1231)
Q Consensus 436 ~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~----~f~~~i~~~r~~e~~~l~~~~~~~~~~~~~~~~~~ 511 (1231)
.+..+..++++++...-.+--....+.+-|.+++|.|+.|+ ++++.+.++.+.|-+.+....+.+.....+...
T Consensus 378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l-- 455 (790)
T KOG0056|consen 378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL-- 455 (790)
T ss_pred eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--
Confidence 22333344555544443333345678888999999999884 566667777777765443332222221111111
Q ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCC
Q 000905 512 TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS 591 (1231)
Q Consensus 512 ~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~ 591 (1231)
.+....++.+|... .+.+|+|....+..++..+..|++.+......++...+-++|+.+.+++++...+.....+....
T Consensus 456 gll~gsll~aY~Vt-~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~ 534 (790)
T KOG0056|consen 456 GLLAGSLLCAYRVT-EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVT 534 (790)
T ss_pred HHhhhhheeeeeee-eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCcccc
Confidence 11112222233333 57899999988999999999999999999999999999999999999765432211122223345
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
.+.|+|+||+|+|+++ +|+|+||||+++||+.+|+|||||+||||++++|.|+++.++|+|.+||
T Consensus 535 ~G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred CCeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence 6899999999999864 6999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 659 SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 659 ~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
+||.||||..|||+||..||.||+| .++|++.++.++++.|+-|..+|+||+|.|||||..||||+|||+|+||+++++
T Consensus 613 ~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 613 SIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred hcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 4999999999999999999999998 588999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhc-CchHHHHH
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLV 816 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~-~~~~~~l~ 816 (1231)
|.|++|||+|||||.+||+.| |.++.+..++||.|+|+||++++-+||.|+|++||+|+|.|+|+||+++ +|.|++++
T Consensus 693 P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MW 771 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMW 771 (790)
T ss_pred CcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHH
Confidence 999999999999999999996 7899999999999999999999999999999999999999999999987 89999999
Q ss_pred HHhhh
Q 000905 817 NAHRD 821 (1231)
Q Consensus 817 ~~~~~ 821 (1231)
+.++.
T Consensus 772 q~qqa 776 (790)
T KOG0056|consen 772 QAQQA 776 (790)
T ss_pred HHHHh
Confidence 86653
No 32
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-69 Score=616.58 Aligned_cols=537 Identities=21% Similarity=0.295 Sum_probs=384.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNR-GEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1231)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L 353 (1231)
+++.++++.++.++..+.....=.+-+.+|.-..- +.......++.++..=...+.++.....-...++....++-+.+
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~l 93 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSAL 93 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56666666665554444333222223344432211 11111111222222222334444433222344678888999999
Q ss_pred HHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 000905 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGV--LFGVVGLGALPGLVLFLICG 431 (1231)
Q Consensus 354 ~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~--L~~~lg~~~l~gl~~~~~~~ 431 (1231)
+..+|+|....++.-..+..+||++||+..|++.+++++..+..++...+-+++++++ -|.-++.+.+.++..++.+.
T Consensus 94 Rv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~ll 173 (573)
T COG4987 94 RVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLL 173 (573)
T ss_pred HHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999988899999999999999999999866555555443333322222 23334444555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000905 432 LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYWMS 510 (1231)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~-~~~~~~~~ 510 (1231)
.++..+.+.-++..++..+.+...-+...|.+.|....+.+|.++.+.+.++..-+.-.+..++....... ...+....
T Consensus 174 i~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~ 253 (573)
T COG4987 174 IIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIA 253 (573)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666677889999999999999999998876654222211111111111111 11122222
Q ss_pred HHHHH-HHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCCchhhhcc
Q 000905 511 PTIIS-SVIFLGCALTGSAPLNASTIFT-VLATLRSMGEPVRMIP-EALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1231)
Q Consensus 511 ~~~~~-~v~~~~~~l~~~~~lt~~~~f~-~l~~~~~l~~pl~~l~-~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~ 587 (1231)
..+++ ...|.++ ..+.+..+...+.. .+..|.. ..++..+. ..+....++..|.+|+.+.+++++....+ . ..
T Consensus 254 g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~-~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~-~~ 329 (573)
T COG4987 254 GLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAA-LEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-D-EQ 329 (573)
T ss_pred HHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHH-HHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-c-cc
Confidence 22222 2222222 23334454322222 2222222 23333333 77889999999999999998765433211 1 11
Q ss_pred ccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------
Q 000905 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1231)
Q Consensus 588 ~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------- 658 (1231)
.+..+..++++|++|+|+++ +.++|+|+||++++||++||+|+||||||||+++|.|-++|++|+|..+|
T Consensus 330 ~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 330 TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQ 408 (573)
T ss_pred cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChh
Confidence 11122279999999999865 56899999999999999999999999999999999999999999999998
Q ss_pred ----eEEEEeCCCcCCCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 659 ----SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 659 ----~iayv~Q~~~lf~~TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
.|++++|.+++|++|+|||+.+++|. ++|++++++++++|++.+++.|+|++|.+||+|.+||||||||++|||+
T Consensus 409 ~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 409 ALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred hHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 59999999999999999999999985 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHH
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~ 813 (1231)
+++|++++||||||.+||+.||+++++ .+...++|||+|+||||+..+++||+|+|||||+|+|+|+|+||++++|.|.
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~-ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~ 567 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLA-LLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYK 567 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHH-HHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHH
Confidence 999999999999999999999999985 4667778999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 000905 814 QLVN 817 (1231)
Q Consensus 814 ~l~~ 817 (1231)
++++
T Consensus 568 ~l~q 571 (573)
T COG4987 568 RLYQ 571 (573)
T ss_pred HHhc
Confidence 8864
No 33
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-69 Score=617.08 Aligned_cols=525 Identities=22% Similarity=0.293 Sum_probs=400.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCc-c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 285 CALLRTIAVVVGPLLLYAFVNYSNRGEE-N--LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1231)
Q Consensus 285 ~~l~~~~~~~~~P~ll~~li~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~i~~K~ 361 (1231)
+.+..-.+....|.+++..+|...+.+. + .......+.+.+++.+..+.+...-.+....+..++-......+|++.
T Consensus 38 ~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~ 117 (591)
T KOG0057|consen 38 LLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHL 117 (591)
T ss_pred HHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334466778899999999988752211 1 111122333444455555554433334445677777777888999999
Q ss_pred HcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000905 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGL-VLFLICGLLNVPFAK 439 (1231)
Q Consensus 362 l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl-~~~~~~~~~~~~~~~ 439 (1231)
+.++...+.+..+|++.+.|..-...+.+++.. +..+....+.+.+....++...|....... ..+.....+......
T Consensus 118 ~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~ 197 (591)
T KOG0057|consen 118 MSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTR 197 (591)
T ss_pred HhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehh
Confidence 999999999999999999998888777776442 344445556666666677777776532211 111111222233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 000905 440 ILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES-RREKEFKWLSEAQLRKAYGTVIYWMSP----TII 514 (1231)
Q Consensus 440 ~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~-~r~~e~~~l~~~~~~~~~~~~~~~~~~----~~~ 514 (1231)
+..+++++..++.++..+.+-|.|.|..+||.|+-|+.-.++... .++.|-..++ +.... .++.+... +..
T Consensus 198 ~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~---~~~sl-~~lnfgQ~~iFsv~~ 273 (591)
T KOG0057|consen 198 WRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLK---YSSSL-AFLNFGQKAIFSVAL 273 (591)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhh---HHhHH-HHHHHHHHHHHHHHH
Confidence 566778888888888999999999999999999999876554432 2222221111 11111 11111111 112
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCc
Q 000905 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1231)
Q Consensus 515 ~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 594 (1231)
+.+.+.+..-+.++.+|.+......+++.++..|+..+...+..+.|+..-++-+......++ +. .....+....++.
T Consensus 274 ~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~-~i-~~~~~~i~~~~~~ 351 (591)
T KOG0057|consen 274 TFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE-DI-QEAALPIELFGGS 351 (591)
T ss_pred HHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh-hh-hhccCCcccCCCc
Confidence 233444443334568999999999999999999999999999999998887776654433221 11 1111122334577
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
|+|+||+|+|+++ +++|+++||+|++||++||||++||||||++++|+|+++ ++|+|.+|| .||
T Consensus 352 I~F~dV~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeEEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 9999999999753 579999999999999999999999999999999999999 999999999 399
Q ss_pred EEeCCCcCCCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 662 YVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 662 yv~Q~~~lf~~TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
|||||..|||+||-+||.+|++. ++|++.+++|.+++++-+.+||+||+|.|||+|.-||||||||||||||+++||+|
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 99999999999999999999984 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHHHHHh
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~~~~ 819 (1231)
+++|||||+||++||+.|++ .+++...+||+|+|.||++++++||+|++++||++.|.|+|+||+++++.|++++..+
T Consensus 509 l~~DEaTS~LD~~TE~~i~~-~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILD-MIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQ 586 (591)
T ss_pred EEecCcccccchhhHHHHHH-HHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccc
Confidence 99999999999999999986 5667889999999999999999999999999999999999999999888999988644
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9e-69 Score=722.99 Aligned_cols=471 Identities=17% Similarity=0.193 Sum_probs=367.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1231)
Q Consensus 343 ~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l 421 (1231)
...+.+.-..++..+|++.++.+..++++.++|+++||+++|++.+++.+. .+..+...++.++.++++++....+.++
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~ 1109 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788889999999999999999999999999999999988644 2444445555555555444433222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000905 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK- 500 (1231)
Q Consensus 422 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~- 500 (1231)
+.++++++...+...+.+..++.++.....++...+.++|.++|+++||.|++|+.|.++..+..+...+.........
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111222222223333344444444555667788999999999999999999998877665554433221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000905 501 AYGTVIYWMSPTIISSVIFLG-CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1231)
Q Consensus 501 ~~~~~~~~~~~~~~~~v~~~~-~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~ 579 (1231)
.....+..+... ++.+++ +.....+.+++|.+..++.+...+..|+..+...+..+.++.+|.+|+.++++.++.+
T Consensus 1190 ~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~ 1266 (1522)
T TIGR00957 1190 WLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEA 1266 (1522)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 111111111111 112222 2223346799999999999999999999999999999999999999999999654322
Q ss_pred Cchhhh-ccc--cCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEE
Q 000905 580 NDDVRR-ISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL 656 (1231)
Q Consensus 580 ~~~~~~-~~~--~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v 656 (1231)
+...+. .++ .+..+.|+|+|++|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+
T Consensus 1267 ~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~I 1345 (1522)
T TIGR00957 1267 PWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIII 1345 (1522)
T ss_pred cccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEE
Confidence 110011 111 1235789999999999764 347999999999999999999999999999999999999999999999
Q ss_pred cC-------------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 657 YG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 657 ~g-------------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
|| +|+||||||.||+|||||||....+++++++++|++.|+++++++.+|+|+||+|||+|.|||||
T Consensus 1346 dG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1425 (1522)
T TIGR00957 1346 DGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVG 1425 (1522)
T ss_pred CCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHH
Confidence 98 59999999999999999999844478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChH
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||||+||||++++|+|+||||||||||++|++.| ++.++...+++|+|+||||++++.+||+|+|||+|+|+|.|+|+
T Consensus 1426 QrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1426 QRQLVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999976 57888888999999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHH
Q 000905 804 ELLLAGTAFEQLVNA 818 (1231)
Q Consensus 804 eL~~~~~~~~~l~~~ 818 (1231)
||+++++.|++++++
T Consensus 1505 eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1505 NLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHhCCCHHHHHHHH
Confidence 999999999999864
No 35
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-68 Score=660.55 Aligned_cols=523 Identities=20% Similarity=0.225 Sum_probs=397.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1231)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L 353 (1231)
.+++.++...++.++..++.++.|++++.++|...... +....+.+++++++..++..++.....+...+.+.++...+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888899999999999999998653211 11122223333334444444444444455677888999999
Q ss_pred HHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICG 431 (1231)
Q Consensus 354 ~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~--~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~ 431 (1231)
+..+|+|.++++.. ..++..+++++|++++.+.... +..+...++.++.. ++++...++.+++.++.+++..
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999873 2356688889999999876432 22233333333222 2333322222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000905 432 LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY-WMS 510 (1231)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~~~~~~-~~~ 510 (1231)
.+...+.+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+............ ...
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333445666777778888889999999999999999999999998887776655544333222222222111111 111
Q ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccC
Q 000905 511 PTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQK 590 (1231)
Q Consensus 511 ~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~ 590 (1231)
.....++.++|.+++.++.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..++. ...+.
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~ 312 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCC
Confidence 112223344555555568999999999999999999999999999999999999999999999754432111 11112
Q ss_pred CCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------
Q 000905 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1231)
Q Consensus 591 ~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------ 658 (1231)
..+.|+++|++|+|+++ ++++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 23579999999999743 35799999999999999999999999999999999999999999999998
Q ss_pred -eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhc
Q 000905 659 -SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1231)
Q Consensus 659 -~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~ 736 (1231)
.++||||+|++|++||+|||+++++ .++++++++++.++++++++.+|+|++|.+||+|.+|||||||||+||||+++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 4999999999999999999997765 78999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 737 ~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
+|+++|||||||+||+++++++. +.+.... +++|+|+||||++.+..||+|++|++|++++.|+|+|++++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~-~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALA-NAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHH-HHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999876 4566553 68999999999999999999999999999999999999753
No 36
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2e-68 Score=659.32 Aligned_cols=511 Identities=21% Similarity=0.262 Sum_probs=384.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1231)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~ 355 (1231)
|+.+....++.++..++..+.|++++.++|....+.........+++++++..++..+......+...+++.++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888999999999999999976311112122222222333333444444333344566788888999999
Q ss_pred HHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1231)
Q Consensus 356 ~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~ 434 (1231)
.+|+|.++++...+++.++|++++++++|++.+++... .+..++...+..++++++++..-.+.+++.++.+++...+.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987653 23344444344444443333222222222222222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000905 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYWMSPTI 513 (1231)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~~-~~~~~~~~~~~ 513 (1231)
..+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+....... ...........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777888888999999999999999999999887776654433322211111111111 11111111111
Q ss_pred HHH-HHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCC
Q 000905 514 ISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1231)
Q Consensus 514 ~~~-v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~ 592 (1231)
..+ ..+.++... .+.+|.+.+++++.+...+..|+..+...+..+.+++++++|+.++++.++.+.+. ... .....
T Consensus 242 ~~~~~~~~~~~~~-~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~~~-~~~~~ 318 (529)
T TIGR02857 242 VALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-APV-TAAPA 318 (529)
T ss_pred HHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cCC-CCCCC
Confidence 122 233444444 57899999999999999999999999999999999999999999999744321111 111 11123
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------e
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ 659 (1231)
+.|+++|++|+|+++ ++++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 319 ~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 479999999999753 35799999999999999999999999999999999999999999999998 3
Q ss_pred EEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC
Q 000905 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1231)
Q Consensus 660 iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1231)
|+||||+|++|++||||||.+|.+ .++++++++++.++++++++.+|+|+||.+||+|.+|||||||||+||||++++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999876 6899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEE
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl 791 (1231)
+|+||||||||||+++++++. +.+.+..+++|+|+||||++.++.||+|++|
T Consensus 478 ~ililDE~ts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVT-EALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999986 4567777899999999999999999999986
No 37
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-68 Score=716.85 Aligned_cols=473 Identities=18% Similarity=0.233 Sum_probs=353.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1231)
Q Consensus 343 ~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l 421 (1231)
.+.+.+....++..+|++.++.+..+++++++|+++||+++|++.+++... .+.......++++.+++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788889999999999999999999999999999999987543 3444444555555444433332222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501 (1231)
Q Consensus 422 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~ 501 (1231)
+.+++++++..+...+.+..++.++.....+....+.+.|.++|+++||.|++|++|.+..++..+...+..........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111122222333333333344455667789999999999999999999887766555544332111111111
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHH-HhCCCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000905 502 Y-GTVIYWMSPTIISSVIFLGCA-LTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1231)
Q Consensus 502 ~-~~~~~~~~~~~~~~v~~~~~~-l~~~~~lt-----~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~ 574 (1231)
. ...+..+... ++.+++.. ....+..+ ++.+-.++++...+..++..+......+.++.+|.+|+.++++
T Consensus 1138 wl~~~l~~~~~~---~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~ 1214 (1622)
T PLN03130 1138 WLAIRLETLGGL---MIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYID 1214 (1622)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 1111111111 11122222 22222111 2333334444555667777777888888999999999999987
Q ss_pred ccCCCCchhh---hccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCC
Q 000905 575 DHELNNDDVR---RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651 (1231)
Q Consensus 575 ~~e~~~~~~~---~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~ 651 (1231)
.++..+...+ ..+..+..+.|+|+|++|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+++|++
T Consensus 1215 ~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~ 1293 (1622)
T PLN03130 1215 LPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293 (1622)
T ss_pred CCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 5433211111 11111234689999999999754 3579999999999999999999999999999999999999999
Q ss_pred cEEEEcC-------------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCC
Q 000905 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1231)
Q Consensus 652 G~I~v~g-------------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~ 718 (1231)
|+|.+|| +|+||||+|.||+|||||||.++++++++++++|++.|+++++++.+|+|+||+|||+|.
T Consensus 1294 G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~ 1373 (1622)
T PLN03130 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE 1373 (1622)
T ss_pred ceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC
Confidence 9999998 499999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeE
Q 000905 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1231)
Q Consensus 719 ~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~ 798 (1231)
|||||||||||||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++.+||+|+||++|+|+|
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I-q~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999986 578888889999999999999999999999999999999
Q ss_pred ecChHHHHhc-CchHHHHHHHhh
Q 000905 799 SGNYQELLLA-GTAFEQLVNAHR 820 (1231)
Q Consensus 799 ~Gt~~eL~~~-~~~~~~l~~~~~ 820 (1231)
.|+|+||+++ +|.|+++++...
T Consensus 1453 ~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1453 FDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred eCCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999987 689999987543
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-67 Score=708.62 Aligned_cols=471 Identities=18% Similarity=0.222 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1231)
Q Consensus 343 ~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l 421 (1231)
.+.+.+.-..++..+|++.++.+..+++++++|+++||+++|++.+++.+.. +.......++++.+++++.....+..+
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 1054 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778899999999999999999999999999999999876442 333444444444444443332222211
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 422 PGLVLFLIC-GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1231)
Q Consensus 422 ~gl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~ 500 (1231)
.. ++++++ ..+.....+..++.++.....++...+.++|.++|+++||.|++|+.|.+..++..+...+.........
T Consensus 1055 ~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1495)
T PLN03232 1055 AI-MPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSN 1133 (1495)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111111 1111111222233444445555666788999999999999999999988877665554443221111111
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHH-HHhCCCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000905 501 A-YGTVIYWMSPTIISSVIFLGC-ALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1231)
Q Consensus 501 ~-~~~~~~~~~~~~~~~v~~~~~-~l~~~~~lt-----~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl 573 (1231)
. ....+.... ..++.+++. .....+.+. ++.+..++++...+..|+..+...+..+.++.+|.+|+.+++
T Consensus 1134 ~wl~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~ 1210 (1495)
T PLN03232 1134 RWLTIRLETLG---GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYI 1210 (1495)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 111111111 111112222 122222211 222333555666778899999999999999999999999999
Q ss_pred cccCCCCch-hhhccc--cCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC
Q 000905 574 LDHELNNDD-VRRISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650 (1231)
Q Consensus 574 ~~~e~~~~~-~~~~~~--~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~ 650 (1231)
+.++.++.. ....+. .+..+.|+|+|++|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+++|+
T Consensus 1211 ~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~ 1289 (1495)
T PLN03232 1211 DLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE 1289 (1495)
T ss_pred cCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 754322111 010111 1234679999999999654 357999999999999999999999999999999999999999
Q ss_pred CcEEEEcC-------------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCC
Q 000905 651 SGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1231)
Q Consensus 651 ~G~I~v~g-------------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G 717 (1231)
+|+|.+|| +|+||||+|.||+|||||||.++++++++++++|++.|+++++++.+|+|+||+|||+|
T Consensus 1290 ~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1290 KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 99999998 49999999999999999999999889999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEe
Q 000905 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1231)
Q Consensus 718 ~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~ 797 (1231)
.||||||||||+||||++++|+|+||||||||||++|++.| ++.++...+++|+|+||||++++.+||+|+||++|+|+
T Consensus 1370 ~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I-q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI-QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448 (1495)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999986 57788888999999999999999999999999999999
Q ss_pred EecChHHHHhcC-chHHHHHHHh
Q 000905 798 QSGNYQELLLAG-TAFEQLVNAH 819 (1231)
Q Consensus 798 ~~Gt~~eL~~~~-~~~~~l~~~~ 819 (1231)
|.|+|+||++++ +.|+++++.+
T Consensus 1449 E~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1449 EYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999886 5899998654
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.7e-66 Score=696.76 Aligned_cols=470 Identities=15% Similarity=0.186 Sum_probs=358.2
Q ss_pred HHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1231)
Q Consensus 348 ~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~ 426 (1231)
+....++..+|++.++.+..+++++++|+++|++++|++.+++.+. .+..++...+.++.++++++....+..++.+++
T Consensus 1028 ~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667889999999999999999999999999999999988644 233444444545444444443322222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000905 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ-LRKAYGTV 505 (1231)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~-~~~~~~~~ 505 (1231)
+++...+...+.+..++.++.....++...+.++|.++|+++||.|++|+.+.++..+.-+...+...... ........
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222233344444555555566667889999999999999999999887776544333332111111 11111111
Q ss_pred HHHHHHHHHHHHHHHHH--HHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-ch
Q 000905 506 IYWMSPTIISSVIFLGC--ALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-DD 582 (1231)
Q Consensus 506 ~~~~~~~~~~~v~~~~~--~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~-~~ 582 (1231)
...+...++.++.+++. ...+.+.++++.+..++.+...+..|+..+...+..+.++.+|++|+.++++..+.++ ..
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~ 1267 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPE 1267 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 11121122122222221 2223345788888888888888899999999999999999999999999985322110 00
Q ss_pred -----------------------hhh--c----cccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCC
Q 000905 583 -----------------------VRR--I----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1231)
Q Consensus 583 -----------------------~~~--~----~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sG 633 (1231)
.+. . +.....+.|+|+||+|+|+++ .+++|+|+||+|++||++||||+||
T Consensus 1268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTG 1346 (1560)
T PTZ00243 1268 LDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTG 1346 (1560)
T ss_pred ccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCC
Confidence 000 0 001124679999999999754 3579999999999999999999999
Q ss_pred CChHHHHHHHhCCCcCCCcEEEEcC-------------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchH
Q 000905 634 AGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700 (1231)
Q Consensus 634 SGKSTLl~~Llg~~~~~~G~I~v~g-------------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~ 700 (1231)
||||||+++|+|+++|++|+|.+|| +|+||||+|.||+|||||||..+++++++++++|++.|++++
T Consensus 1347 SGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~ 1426 (1560)
T PTZ00243 1347 SGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRE 1426 (1560)
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChH
Confidence 9999999999999999999999998 499999999999999999999888899999999999999999
Q ss_pred HHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 000905 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND-ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1231)
Q Consensus 701 di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~-~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l 779 (1231)
+++.+|+|+||.|||+|.||||||||||+||||++++ |+|+|||||||+||+++++.| ++.++...+++|+|+||||+
T Consensus 1427 ~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I-q~~L~~~~~~~TvI~IAHRl 1505 (1560)
T PTZ00243 1427 RVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSAFSAYTVITIAHRL 1505 (1560)
T ss_pred HHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHCCCCEEEEEeccH
Confidence 9999999999999999999999999999999999996 899999999999999999986 57788888999999999999
Q ss_pred chhhccCeEEEEeCCeEeEecChHHHHhc-CchHHHHHHHh
Q 000905 780 EFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819 (1231)
Q Consensus 780 ~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~-~~~~~~l~~~~ 819 (1231)
+++.+||+|+||++|+|+|.|+|+||+++ ++.|+++++..
T Consensus 1506 ~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1506 HTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999985 88999998754
No 40
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=5e-64 Score=567.38 Aligned_cols=527 Identities=22% Similarity=0.313 Sum_probs=409.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1231)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1231)
...+....+++.++..++++.+.+++.+..|+.+-+.-|-+-.. .+....+.+.++.....+++.++...-.+...|++
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S-~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPS-RSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667888899999999999999999999877766654322 11111222222222333333443333334456899
Q ss_pred HHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF------WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1231)
Q Consensus 347 ~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~------~~~~~~~~~~~i~~~~~~L~~~lg~~~ 420 (1231)
.++-..|...+|.-+.+.+..........+.+ .|.+.+..|.. ++...|. |+-+.+ ++++...+|+.+
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~-P~yl~v-~fl~Hp~lG~~a 165 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWM-PLYLAV-IFLFHPWLGLIA 165 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchH-HHHHHH-HHHHHHHHHHHH
Confidence 99999999999998865554333222233333 47777776543 2333443 443333 234456788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1231)
Q Consensus 421 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~ 500 (1231)
++|.++++++.+++-.+. ++--++..+..-++....+-.+.|.++|+..|..+...+++.+...+.++......-..
T Consensus 166 ~~ga~iLv~la~ln~~~t---~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERAT---RKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888777776666654443 34445556667778888999999999999999999888888877777666554443322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000905 501 -AYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1231)
Q Consensus 501 -~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~ 579 (1231)
.++...-..-..+-+.++-.|.+++..+++|+|.+++.-.+....-.|+......+.++..++.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 2222222233344556677778888789999999998777777677899999999999999999999999999754322
Q ss_pred CchhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-
Q 000905 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1231)
Q Consensus 580 ~~~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g- 658 (1231)
. ++.+.+.+++.+.++++++. |++.++|+|+|+||++++||-++|+||||||||||.++|.|-++|.+|+|++||
T Consensus 323 ~---~~m~LP~P~g~L~Ve~l~~~-PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 323 A---ERMPLPAPQGALSVERLTAA-PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred c---CCCCCCCCCceeeEeeeeec-CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 1 23445566789999999996 455568999999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEeCCCcCCCCCHHHHH-hcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 ------------SIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ------------~iayv~Q~~~lf~~TIreNI-~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
+|||.||+..||+|||+||| .|+++.|++++.++.++++.||-|-.||+||||.|||.|.+||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 69999999999999999999 58888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
|||+||||+|.||.+++||||-|+||.+-|+.+.+ +|.. ..+|.|+|+||||++.+..+|+|++|+||++...|+-+|
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~-Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA-AILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH-HHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHH
Confidence 99999999999999999999999999999999864 5544 458999999999999999999999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
++++
T Consensus 558 VLa~ 561 (580)
T COG4618 558 VLAK 561 (580)
T ss_pred HHHH
Confidence 9864
No 41
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.4e-63 Score=666.86 Aligned_cols=472 Identities=19% Similarity=0.192 Sum_probs=356.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1231)
Q Consensus 343 ~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l 421 (1231)
.+.+.+....++..++++.++.+..++++.++|+++||++.|++.+++.+. .+..+....+.++..+++++...++..+
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l 1029 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777888999999999999999999999999999999987544 2344444444455444444444333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000905 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA-QLRK 500 (1231)
Q Consensus 422 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~-~~~~ 500 (1231)
+.++++++...+...+.+..++.++.....++...+.+.|.++|+.+||.|++|+.|.++..+.-+...+..... ....
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222223333344444555556667788999999999999999999998877765444322111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000905 501 AYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1231)
Q Consensus 501 ~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~ 580 (1231)
.....+..+...++.++.++ .++....+++.+..++++...+..++..+...+..+..+.+|.+||.++++.++..+
T Consensus 1110 wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~ 1186 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEP 1186 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 11111111111111111111 111122445555555556666778888888888999999999999999986543211
Q ss_pred chhh--------------h-c-c-ccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHH
Q 000905 581 DDVR--------------R-I-S-LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1231)
Q Consensus 581 ~~~~--------------~-~-~-~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~L 643 (1231)
.... . . + ..+..+.|+|+|++|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|
T Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1187 RPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred cccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 1000 0 0 0 11234689999999999764 46899999999999999999999999999999999
Q ss_pred hCCCcCCCcEEEEcC-------------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCc
Q 000905 644 LGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710 (1231)
Q Consensus 644 lg~~~~~~G~I~v~g-------------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~ 710 (1231)
+|+++ .+|+|.+|| +|+||||+|.||+|||||||....++++++++++++.|+|+++++.+|+|+|
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccc
Confidence 99998 799999998 5999999999999999999987778899999999999999999999999999
Q ss_pred ccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEE
Q 000905 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1231)
Q Consensus 711 T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iiv 790 (1231)
|+|||+|.||||||||||+||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++..||+|+|
T Consensus 1345 t~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I-~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII-RKTLKQSFSNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred cccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999987 4678888899999999999999999999999
Q ss_pred EeCCeEeEecChHHHHhcCchHHHHHHHhh
Q 000905 791 LEGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1231)
Q Consensus 791 l~~G~I~~~Gt~~eL~~~~~~~~~l~~~~~ 820 (1231)
|++|+|+|.|+|+||+++++.|++++++..
T Consensus 1424 L~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1424 IEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 999999999999999998899999987654
No 42
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.8e-62 Score=605.65 Aligned_cols=510 Identities=17% Similarity=0.144 Sum_probs=368.6
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 271 ITN-VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1231)
Q Consensus 271 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1231)
+++ .+++.+++..++.++..+.....|.+++.+++....... ...+.++ ++++...+..+ ...+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ--GSLFSFG-GLCLLALLFRI---GADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc--hHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 566 788888888899999999999999999888764211111 1111122 22222222111 1223346778888
Q ss_pred HHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1231)
Q Consensus 350 r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1231)
...++..+|+|.++++...+++.++|++++++++|++.++++...+.......+.++++++++++.-...+++.++++++
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999988654333333333444444444443332222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 000905 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKS----LIESRREKEFKWLSEAQLRKAYG 503 (1231)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~--~f~~----~i~~~r~~e~~~l~~~~~~~~~~ 503 (1231)
...+..+..++.++...+..+..++..+.+.|.+.|++++|.++.++ ...+ ..++.++...+..+ ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 241 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEIL---IFIAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHH
Confidence 22333334455556666667777888899999999999999999853 2222 23333322221111 110011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-Cc-
Q 000905 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN-ND- 581 (1231)
Q Consensus 504 ~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~-~~- 581 (1231)
.+..........++.+.+.. .+.++.|.+++++.+...+..|+..+...+..+.++++|.+|+.++++.++.+ ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 11111111111111222211 15789999999999999999999999999999999999999999997532111 00
Q ss_pred h-hhhc-----cccCCCCcEEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcE
Q 000905 582 D-VRRI-----SLQKSDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1231)
Q Consensus 582 ~-~~~~-----~~~~~~~~I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~ 653 (1231)
+ .... +.....+.|+++|++|+|++.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 0 0000 0111235799999999997532 246999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcC
Q 000905 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1231)
Q Consensus 654 I~v~g-------------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~L 720 (1231)
|.++| .++||+|+|++|++|+++|+ ..+.++++++++++.++++++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 99998 38999999999999999995 33457889999999999999999999999994 899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhccCeEEEEeCCeEeEe
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~ 799 (1231)
||||||||+||||++++|+|+|||||||+||+++++++.+..++.. .+++|+|+||||++.+..||+|++|++|+|+|.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999876554433 468999999999999999999999999999874
No 43
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-64 Score=556.04 Aligned_cols=463 Identities=22% Similarity=0.298 Sum_probs=353.9
Q ss_pred HHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1231)
Q Consensus 348 ~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~ 426 (1231)
.....+....|.+..+|+..++.+..+|.+..-+..-..-++.+..+ +..+....+++.+..+++++..||......++
T Consensus 12 ~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~v 91 (497)
T COG5265 12 IAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLV 91 (497)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 33344555678899999988888888887665555444445444333 33444566788888778877777654332222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhchHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000905 427 FLICG-LLNVPFAKILQKCQSEFMIAQDE-RLRSTSEILNNMKIIKLQSWEEKFKSLIES----RREKEFKWLSEAQLRK 500 (1231)
Q Consensus 427 ~~~~~-~~~~~~~~~~~~~~~~~~~~~d~-r~~~~~E~L~gir~IK~~~~E~~f~~~i~~----~r~~e~~~l~~~~~~~ 500 (1231)
.+++. .+......+--. .++.|...|. ......+.|-+..++|.|+-|+.+.++..+ +++.+.+........+
T Consensus 92 tv~lY~~ftv~~s~wr~~-~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln 170 (497)
T COG5265 92 TVILYLLFTVIVSDWRTD-FRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLN 170 (497)
T ss_pred HHHHHHHhheeehhhhHH-HHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 22222 222222222222 3344444454 345678899999999999999776555443 3333333211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000905 501 AYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1231)
Q Consensus 501 ~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~ 580 (1231)
.....++... ...........+..+.+|.|......++..++..|+..+......+.|++...+++.+.+..+-...
T Consensus 171 ~gQ~~I~~~~---l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~ 247 (497)
T COG5265 171 FGQTAIFSTG---LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVS 247 (497)
T ss_pred HhhHHHHHHH---HHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhc
Confidence 1111111110 1111222333344588999999999999999999999999999999999999999999886432111
Q ss_pred chhhhcccc-CCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe
Q 000905 581 DDVRRISLQ-KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS 659 (1231)
Q Consensus 581 ~~~~~~~~~-~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~ 659 (1231)
+.....+.. ...+.+.|+|++|.|.++ +|+|+|+||++++|+++||||++|+||||++++|.|+|++++|.|.+||+
T Consensus 248 d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~q 325 (497)
T COG5265 248 DAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ 325 (497)
T ss_pred cCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcch
Confidence 111111111 235679999999999764 68999999999999999999999999999999999999999999999993
Q ss_pred -------------EEEEeCCCcCCCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 660 -------------IAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 660 -------------iayv~Q~~~lf~~TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
||.|||+..|||+||..||.+|+|. +++++.+++++++++++|+.+|+|++|.|||+|-.||||+|
T Consensus 326 dir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek 405 (497)
T COG5265 326 DIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred hHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence 9999999999999999999999984 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
||+|+||+++++|+|++|||+|||||.|||+.| +..++...+|+|.++|+||++++-+||+|+||+||+|+|.|+|+||
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHH
Confidence 999999999999999999999999999999997 6788888899999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHH
Q 000905 806 LLAGTAFEQLVN 817 (1231)
Q Consensus 806 ~~~~~~~~~l~~ 817 (1231)
++++|.|+++|.
T Consensus 485 l~~~g~ya~mw~ 496 (497)
T COG5265 485 LAAGGLYAEMWR 496 (497)
T ss_pred HHcCChHHHHhc
Confidence 999999999874
No 44
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-61 Score=614.26 Aligned_cols=469 Identities=19% Similarity=0.232 Sum_probs=361.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1231)
Q Consensus 343 ~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l 421 (1231)
...+.+.-..|...++++.+|-|..+++..++|.|+||++.|.+.+++.+. .+.......++++..++++.....+..+
T Consensus 883 ~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli 962 (1381)
T KOG0054|consen 883 AKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLI 962 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 356678888888899999999999999999999999999999999987544 3444444444444433333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 422 PGLVLFLICGLLNVPFAKILQKCQSEFMI----AQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ 497 (1231)
Q Consensus 422 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~ 497 (1231)
+.+++.++ .+.+.+.+.+..++..+ .+.--.+..+|.++|+-+|++|+.|++|.+.....-+...+..-...
T Consensus 963 ~~~pl~v~----~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~ 1038 (1381)
T KOG0054|consen 963 AIIPLGVI----YYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSI 1038 (1381)
T ss_pred HHHHHHHH----HHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHH
Confidence 22222222 22223333333332222 23334568999999999999999999999888766655433211111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000905 498 -LRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576 (1231)
Q Consensus 498 -~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~ 576 (1231)
..+++..-+..++..++..+.+... +...+..++|.+--++++...+..-+..+-.....+-.-.+|.+|+.+|.+.+
T Consensus 1039 ~a~RWla~Rle~ig~~~v~~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~ 1117 (1381)
T KOG0054|consen 1039 SANRWLAVRLELLGNLVVLIAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIP 1117 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCC
Confidence 1111121222222222222222222 22222277888888888887787777888888888888899999999999843
Q ss_pred CCCCc---hhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcE
Q 000905 577 ELNND---DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1231)
Q Consensus 577 e~~~~---~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~ 653 (1231)
+..+. +..+++..+.+|.|+|+|++.+|.++ .+++||||||+|+|||+++|||++|||||||+++|.|+.+|.+|+
T Consensus 1118 ~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~ 1196 (1381)
T KOG0054|consen 1118 SEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGE 1196 (1381)
T ss_pred CCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCe
Confidence 32111 11122334567899999999999876 468999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcC
Q 000905 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1231)
Q Consensus 654 I~v~g-------------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~L 720 (1231)
|.+|| +++.+||||.||+||+|.|+---++++|+++++|+|.|+|++.++++|+|+|++|.|+|.|+
T Consensus 1197 I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~ 1276 (1381)
T KOG0054|consen 1197 ILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENF 1276 (1381)
T ss_pred EEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccC
Confidence 99998 69999999999999999999988889999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEec
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G 800 (1231)
|-||||-++||||++++++|++|||+|++||++|... +|+.|++..+++|||.|+||++++-++|+|+|||+|+|+|.|
T Consensus 1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~l-IQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Efd 1355 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL-IQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFD 1355 (1381)
T ss_pred ChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHH-HHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecC
Confidence 9999999999999999999999999999999999885 589999999999999999999999999999999999999999
Q ss_pred ChHHHHhc-CchHHHHHHH
Q 000905 801 NYQELLLA-GTAFEQLVNA 818 (1231)
Q Consensus 801 t~~eL~~~-~~~~~~l~~~ 818 (1231)
+|++|+++ ++.|++++.+
T Consensus 1356 sP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1356 SPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred ChHHHHhCCcchHHHHHHH
Confidence 99999976 5667655543
No 45
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=8.7e-60 Score=583.32 Aligned_cols=506 Identities=17% Similarity=0.182 Sum_probs=355.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 267 VRKVITNVYLKENIFIAICALLRTIAVVVG-PLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1231)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1231)
+++.+++.+++.++...++.++..++.++. |++.+.++|..... ......+++++++..++..+ ..+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVTLG----SQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 456778888888888888888888888774 67778888754321 11111111111112122221 12233456
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1231)
Q Consensus 346 ~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~ 425 (1231)
+.++...++..+|+|.++++...++++++|++++++++|++.+..+...+..++...+.++++++++++.-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77777788889999999999999999999999999999999998754444455556666666665555544444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--h----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQS--W----EEKFKSLIESRREKEFKWLSEAQLR 499 (1231)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~--~----E~~f~~~i~~~r~~e~~~l~~~~~~ 499 (1231)
++++...+...+.++.++..++.++..++..+.+.|.++|+++++..+ . ++.+.+..++.++...+..+ ..
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 232 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT---FH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH---HH
Confidence 333333445556677777777888888999999999999999997432 2 23333333333333222111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000905 500 KAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1231)
Q Consensus 500 ~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~ 579 (1231)
.............++.+..+.+... +.+ +.+.+..+..+...+..|+..+...+..+.+++++.+|+.++++.++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~ 309 (547)
T PRK10522 233 LSAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA 309 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 0000000000000111111111111 112 2222222222333466899999999999999999999999987543321
Q ss_pred CchhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-
Q 000905 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1231)
Q Consensus 580 ~~~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g- 658 (1231)
+.. ...+ .+..+.++++|++|+|++ ++++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.++|
T Consensus 310 ~~~-~~~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 310 EFP-RPQA-FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred ccc-cccc-cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 101 1111 111247999999999974 24799999999999999999999999999999999999999999999987
Q ss_pred ------------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ------------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
+|+||||+|++|++|++|| +.+.++++++++++.+++.++++. |+|. .+|.+|||||||
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~q 456 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKK 456 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHH
Confidence 4999999999999999999 556788889999999988877763 4442 258999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeEeEe
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~ 799 (1231)
||+||||++++|+++|||||||+||+++++.+.+ .+.... +++|+|+||||++.++.||+|++|++|+++|.
T Consensus 457 Rl~lARal~~~~~ililDE~ts~LD~~~~~~i~~-~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQ-VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999998765 454433 58999999999999999999999999999986
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.9e-55 Score=550.18 Aligned_cols=504 Identities=16% Similarity=0.152 Sum_probs=358.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQE-GLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1231)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~ 355 (1231)
.++..+++.++.+++.+..|.+.+.++|.+.+.+.. ... .+.+++++++..++.++.. +...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~----~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIK----YLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 466677788888999999999999999976543221 211 1222223333333333332 2233444555555555
Q ss_pred HHHHHHH----cCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000905 356 AVYQKQL----KLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA-LPGLVLFLI 429 (1231)
Q Consensus 356 ~i~~K~l----~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~-l~gl~~~~~ 429 (1231)
.+.++.+ ..+...+++ ++|++.+++++|++.+.+... .+..+...++.++.+++.++..+++.. +..++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 5554444 344344444 689999999999999987644 344555556666666666665454433 222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000905 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIYW 508 (1231)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~-~~~~~~~ 508 (1231)
...+...+.+.+.+..++..+..++.....+|.++|+++||.|+.|+...++.++.-++-.+...+...... +..+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444556677778888888888888889999999999999999999987766665544333332222222222 2222211
Q ss_pred HHHH--HHHHHHHHHH-HHhCC----CCCcHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000905 509 MSPT--IISSVIFLGC-ALTGS----APLNASTIFT-VL---ATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1231)
Q Consensus 509 ~~~~--~~~~v~~~~~-~l~~~----~~lt~~~~f~-~l---~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e 577 (1231)
+... ......+.+. ++... +.+|.+..+. ++ .++..+..|+..+...+..++++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111122222 22221 5688876554 33 34567789999999999999999999999999996422
Q ss_pred C-C-----Cchhhh-----------------ccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCC
Q 000905 578 L-N-----NDDVRR-----------------ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1231)
Q Consensus 578 ~-~-----~~~~~~-----------------~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGS 634 (1231)
. + ...... .......+.|+++|++|+|+++ +++|+|+||+|++||+++|+||+||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCC
Confidence 1 0 000000 0001123469999999999632 4799999999999999999999999
Q ss_pred ChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCCCCHHHHHhcCC--------CCCHHHHHHHHHHhcchHHHhc
Q 000905 635 GKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINN 704 (1231)
Q Consensus 635 GKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~~TIreNI~fg~--------~~~~~~~~~vl~~~~L~~di~~ 704 (1231)
|||||+++|.|+++|++|+|.+++ +++||||+|++|++|++|||.++. ..++++++++++.+++++.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999999875 699999999999999999999974 2467889999999999998887
Q ss_pred CCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc
Q 000905 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1231)
Q Consensus 705 lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~ 784 (1231)
|.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+ .++. .++|+|+||||++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~-~l~~--~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR-LCRE--FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHH--cCCEEEEEeCchHHHHh
Confidence 999999986 577999999999999999999999999999999999999998764 4544 38999999999999999
Q ss_pred cCeEEEEeC
Q 000905 785 VDRILVLEG 793 (1231)
Q Consensus 785 aD~Iivl~~ 793 (1231)
||+|++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999973
No 47
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-48 Score=445.94 Aligned_cols=263 Identities=25% Similarity=0.367 Sum_probs=222.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEeeeEeeCCC
Q 000905 528 APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607 (1231)
Q Consensus 528 ~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~y~~~ 607 (1231)
+++++..+|+.+++++.+..|+..+|..... .+|+.+|+..++.+...... ..+..+.|+++|++++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 5789999999999999998888877665433 56899998765533211111 12334689999999999643
Q ss_pred CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC---------------eEEEEeCCC
Q 000905 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------------SIAYVSQTS 667 (1231)
Q Consensus 608 ~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g---------------~iayv~Q~~ 667 (1231)
.+++|+|+||+|++||+++|+|++|||||||+++|+|+++ |++|+|.++| .++||||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3579999999999999999999999999999999999997 5799998765 499999999
Q ss_pred cCCCCCHHHHHhcCCC---CC-HH----HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCC
Q 000905 668 WIQSGSIRDNILYGKP---MD-KA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1231)
Q Consensus 668 ~lf~~TIreNI~fg~~---~~-~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1231)
|+|++||+|||.|+.. ++ ++ .++++++.|+|.+++ ++.++++|.+|||||||||+||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999998753 22 22 367788888876544 478999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhc
Q 000905 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 740 IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|+||||||||||+++.++ +++++++..+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~-i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAK-IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999998 46788888889999999999999887 999999999999999999999754
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.3e-46 Score=419.42 Aligned_cols=223 Identities=26% Similarity=0.373 Sum_probs=206.2
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.|+++|++++|+++ .+++|+|+||+|++||+++|+|++|||||||+++|.|+++ .+|+|.++| .|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999643 3579999999999999999999999999999999999998 799999998 49
Q ss_pred EEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 661 ayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
+||||+|++|++|++||+.+..++++++++++++.++|.+.+..+|+|++|.++|+|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999975445778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHHHHHh
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~~~~ 819 (1231)
+||||||++||+++.+.+ ++.+....+++|+|+|||+++.+..||+|++|++|++++.|++++|++.++.|++++...
T Consensus 160 lllDEpts~LD~~~~~~l-~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 160 LLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEECccccCCHHHHHHH-HHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 999999999999999876 466766667899999999999999999999999999999999999999878888887643
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-44 Score=366.85 Aligned_cols=200 Identities=26% Similarity=0.451 Sum_probs=177.2
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
-|+++|++.+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4789999999963 4799999999999999999999999999999999999999999999999 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
+|+|+|+..||. -|+-|||..+.- .+ +++-.+.++..+|.+-.+..| ..|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 789999999996 599999998731 22 345566788888888777776 4799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhc
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||||.-+|+++|+|||||||||+....+.+ ++..+ -.|.|.|+|||.+.+.++ ||||+.||+|+|+++|+++++..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999998764 55443 478999999999999876 899999999999999999999765
No 50
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=8.3e-42 Score=378.71 Aligned_cols=220 Identities=30% Similarity=0.471 Sum_probs=200.4
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
|+++|+++.|+.. .+++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999642 35799999999999999999999999999999999999999999999987 399
Q ss_pred EEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 662 yv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
|++|++++++.|++|||.++.+ .+.+++.+.++..++.+.++.+|.|+++..+.++.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998764 456677778888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHHH
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~ 816 (1231)
+||||||++||+++.+.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+++++.++.+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIM-RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 9999999999999999876 45666667899999999999998899999999999999999999998887777654
No 51
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2e-41 Score=382.06 Aligned_cols=219 Identities=41% Similarity=0.710 Sum_probs=199.7
Q ss_pred CCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcC
Q 000905 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669 (1231)
Q Consensus 590 ~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~l 669 (1231)
.....|+++|+++.+ +++|+|+||+|++||+++|+|++|||||||+++|.|+++|.+|+|.++|.|+|++|++++
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l 109 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI 109 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccc
Confidence 345679999999952 469999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000905 670 QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1231)
Q Consensus 670 f~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~Sa 749 (1231)
++.|++|||.++...++.++.++++++++.+.+..+|.+++|.+++++.+||||||||++||||++++|+++||||||++
T Consensus 110 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~g 189 (282)
T cd03291 110 MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 (282)
T ss_pred cccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999866666677888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHH
Q 000905 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1231)
Q Consensus 750 lD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~ 813 (1231)
||+.+.+.+.+.++....+++|+|++||+++.++.||+|++|++|++++.|+++++.+....|.
T Consensus 190 LD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 190 LDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 9999988876555555556899999999999999999999999999999999999986544444
No 52
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.3e-41 Score=379.20 Aligned_cols=224 Identities=28% Similarity=0.409 Sum_probs=202.9
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
.+.|+++|++++|+.. ++++|+|+||++++||.++|+|++|||||||+++|+|+++|.+|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4679999999999642 34799999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC
Q 000905 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1231)
Q Consensus 659 ~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1231)
.|+|++|+|++|++|++||+......++++++++++..++.+.++.+|.|++|.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 39999999999999999999876555677788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcC-chHHHHHH
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG-TAFEQLVN 817 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~-~~~~~l~~ 817 (1231)
+++||||||++||+++.+.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.|.+++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 176 SILIMDEATASIDMATENILQ-KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHH-HHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 999999999999999988765 5666666789999999999999899999999999999999999998753 45666553
No 53
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-41 Score=368.70 Aligned_cols=201 Identities=56% Similarity=0.983 Sum_probs=185.5
Q ss_pred EEEEeeeEeeCCCCC--CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCC
Q 000905 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~--~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~ 672 (1231)
++++|+++.|++... +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++|+|+|++|+|.+|+.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999964311 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 000905 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1231)
Q Consensus 673 TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~ 752 (1231)
|++|||.++.++++++..++++.+++.+++..+|.|++|.+++++.+||||||||++||||++++|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEEEEeCCe
Q 000905 753 HTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1231)
Q Consensus 753 ~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~ 795 (1231)
+..+.+++..+.... +++|+|++||+++.+..||+|++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 998888765565443 4799999999999988899999999985
No 54
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-42 Score=370.21 Aligned_cols=203 Identities=27% Similarity=0.417 Sum_probs=176.4
Q ss_pred EEEEeeeEeeCCC--CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~--~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
|+++++++.|... ...++|+|+||+|++||..+|+|.||+|||||++++.|+-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 235689999999999999999999999999999999999999999999999
Q ss_pred --eEEEEeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 659 --SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 659 --~iayv~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
+||+++|++-|++ .|+.|||.|..+ .+ ++|+.+.++..+|.+..+.- ..+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-----------P~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-----------PAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-----------chhcCcchhhHH
Confidence 4999999999998 799999999654 22 34555666666666544443 478999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHH
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
+|||||..+|+|+|.|||||||||+|.+.|.+ +++.. .-|-|+++|||.++.++. ||++.||++|+|+|+|+-.|+
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999999999999985 45433 348999999999999876 999999999999999999998
Q ss_pred HhcC
Q 000905 806 LLAG 809 (1231)
Q Consensus 806 ~~~~ 809 (1231)
..+.
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 7654
No 55
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=361.62 Aligned_cols=188 Identities=33% Similarity=0.500 Sum_probs=167.2
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------eEEEEeC
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------~iayv~Q 665 (1231)
.+++++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|.|+.+|++|+|.++| .++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 4789999999964 5799999999999999999999999999999999999999999999988 5899999
Q ss_pred CCcCCC-CCHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 666 TSWIQS-GSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 666 ~~~lf~-~TIreNI~fg~~~-------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
++-||. -||+||+.||-+. .+++..+.++.++|..+-+..| ..||||||||+|||||+..+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcC
Confidence 999987 6999999998763 2457889999999988877776 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcch-hhccCeEEEEeC--CeE
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEF-LSEVDRILVLEG--GQI 796 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~-l~~aD~Iivl~~--G~I 796 (1231)
|+|+||||||||||+.|..++-+. +.... .++|+++|||+++. +--+|+|+||.+ |+|
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~-l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDE-LLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHH-HHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999999986544 44433 47999999999976 677999999999 445
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-41 Score=369.53 Aligned_cols=217 Identities=32% Similarity=0.548 Sum_probs=197.8
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
|+++|++++|+.. ..++++|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 23799999999999999999999999999999999999999999999987 399
Q ss_pred EEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 662 yv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
|++|++++++.|++||+.++.+ .+.+++.+.++.+++.+.++.+|.|+++..+.+..+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 466778888899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHH
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~ 813 (1231)
+||||||++||+.+.+.+. +.+....+++|+|++||+++.++.||+|++|++|++++.|+.+++.+..+.|.
T Consensus 160 llLDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQ-AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchh
Confidence 9999999999999999875 56766667899999999999988899999999999999999999987665544
No 57
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-41 Score=368.28 Aligned_cols=212 Identities=30% Similarity=0.510 Sum_probs=195.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++++|+. .+++++|+||++++||.++|+||+|||||||+++|.|+.+|.+|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5889999999963 24699999999999999999999999999999999999999999999987 39
Q ss_pred EEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCC
Q 000905 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1231)
Q Consensus 661 ayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1231)
+|++|+++++++|++||+.++.+ ...+++.++++.+++.+.++.+|.|+++.++....+||||||||++||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998865 35677888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 740 IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
++||||||++||+.+.+.+. +.+....+++|+|++||+++.++.||+|++|++|++++.|+.+++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQ-EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999875 566666578999999999999889999999999999999999888754
No 58
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-40 Score=368.52 Aligned_cols=218 Identities=32% Similarity=0.565 Sum_probs=197.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
++++|++++|+.+ +++|+|+||+|++|++++|+|++|||||||+++|.|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 4699999999999999999999999999999999999999999999987 289
Q ss_pred EEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 662 yv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
|++|++++++.|++||+.++.+ .+++...+.++.+++.+.++.+|.|++|.++.+..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998764 356667888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHH
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l 815 (1231)
+||||||++||+++.+.+. +.+....+++|+|++||+++.+..||++++|++|++++.|+.+++.+....+..+
T Consensus 159 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~ 232 (236)
T cd03253 159 LLLDEATSALDTHTEREIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232 (236)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHH
Confidence 9999999999999999876 4566555589999999999999889999999999999999999988766555444
No 59
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=354.66 Aligned_cols=200 Identities=31% Similarity=0.435 Sum_probs=175.6
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
|+|+|+++.|. ++.+++|+||+|++||+++++|||||||||+|++|.|+++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 35799999999999999999999999999999999999999999999998 599
Q ss_pred EEeCCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchH--HHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 662 YVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDK--DINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 662 yv~Q~~~lf~-~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~--di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
||-|+.-||. .||.|||.+--. +++ ++.++.++..+|++ +....| ..|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999999985 699999987532 444 56677888888864 444555 57999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcch-hhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|||..+|+|+|+|||||||||-+.+++-++ +... .-+||+|+|||+++. ++-+|+|.+|++|+|++.|+++|++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e-~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEE-IKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHH-HHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999987443 4332 348999999999975 788999999999999999999999986
Q ss_pred C
Q 000905 809 G 809 (1231)
Q Consensus 809 ~ 809 (1231)
.
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.5e-40 Score=368.81 Aligned_cols=220 Identities=32% Similarity=0.525 Sum_probs=197.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
++++|+++.|+..++.++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999653335799999999999999999999999999999999999999999999987 399
Q ss_pred EEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 662 yv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
|++|++.+++.|++|||.++.+ ...++..+.++.+++.+.++.+|.|.++.++....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998764 356677788888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHH
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l 815 (1231)
+||||||++||+++.+.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+.+++.+....+.++
T Consensus 161 lllDEP~~gLD~~~~~~l~-~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 234 (238)
T cd03249 161 LLLDEATSALDAESEKLVQ-EALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234 (238)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHH
Confidence 9999999999999999875 4565555789999999999998899999999999999999999987765444443
No 61
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-40 Score=364.59 Aligned_cols=206 Identities=28% Similarity=0.446 Sum_probs=191.3
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++++|+.. ++++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 58899999999643 35799999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 661 ayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
+|++|++.++++|++|||.+..+.++++..++++..++.+.+..+|.|++|..++.+.+||||||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999988777778888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecC
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt 801 (1231)
+||||||++||+.+.+.+. +.++...+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQ-KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999998865 56666666899999999999999999999999999998875
No 62
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-41 Score=346.47 Aligned_cols=205 Identities=28% Similarity=0.414 Sum_probs=183.5
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCC-----cEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~-----G~I~v~g--------- 658 (1231)
..++++|+++.|.. +.+|+|||++|++++.+|++|||||||||||+++.+..+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46899999999963 579999999999999999999999999999999999998876 9999988
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCCC----C---HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM----D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~~----~---~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
+||.|+|.|--|..||.|||.||... + +|.++++++.++|.+.++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999999542 1 4678999999999887763 24577889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||+.-+|+|+|||||||||||.+..+| ++.+.++.++-|+|+|||+++-. +-+|+...+-+|+++|.|+-++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999986 67888888899999999999864 5689999999999999999888
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+..+
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 7654
No 63
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-40 Score=331.42 Aligned_cols=198 Identities=30% Similarity=0.442 Sum_probs=175.7
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-----------EEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~-----------iayv 663 (1231)
+.++++.|+|... =-..+++|++||.+||+||||||||||+++|.|+..|.+|+|.++|. ++.+
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5678899999632 13689999999999999999999999999999999999999999983 9999
Q ss_pred eCCCcCCCC-CHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 664 SQTSWIQSG-SIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 664 ~Q~~~lf~~-TIreNI~fg~~-------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
.||.-||.- ||++||-+|.. .+.++++.++...+|..+.+.||. .||||||||+||||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 999999975 99999999963 357899999999999999999984 69999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
++.+|++|||||||||+.-...... .+.+. -++.|+++|||+++.+ +.+|+++++++|||.++|+-+++.+..
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~-Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLA-LVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999998887653 34333 3689999999999875 569999999999999999999988654
No 64
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.3e-40 Score=357.34 Aligned_cols=200 Identities=26% Similarity=0.425 Sum_probs=176.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++|+|+ ++++|+|+||++++||+++|+||+||||||||++|.|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999996 35899999999999999999999999999999999999999999999999 59
Q ss_pred EEEeCCC-cCCCCCHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 661 AYVSQTS-WIQSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 661 ayv~Q~~-~lf~~TIreNI~fg~~-----------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
|||||++ .-+.-|++|=+.+|+- .|++.+.++++.+++.+..+. .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999996 4567799999999962 134567888999999876542 2346999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcch-hhccCeEEEEeCCeEeEecChHHH
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
.|||||.++|+|++||||||+||....-++++ .++.. .+|+|+|+|+|++.. ++.||++++|++|+|+.+|+++|+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999999875 45443 358999999999986 688999999999999999999998
Q ss_pred Hhc
Q 000905 806 LLA 808 (1231)
Q Consensus 806 ~~~ 808 (1231)
+..
T Consensus 227 lT~ 229 (258)
T COG1120 227 LTE 229 (258)
T ss_pred cCH
Confidence 864
No 65
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-40 Score=370.85 Aligned_cols=201 Identities=32% Similarity=0.442 Sum_probs=179.2
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iay 662 (1231)
.|+++|++.+|.+. .+++|+|++|++||+++++|||||||||||++|.|+.+|++|+|.++| .||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999642 299999999999999999999999999999999999999999999998 4999
Q ss_pred EeCCCcCCCC-CHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWIQSG-SIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~lf~~-TIreNI~fg~~~-------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
|+|+.-|+.- ||+|||.||... .+++++++++..++++.++..| ..||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHH
Confidence 9999999865 999999998653 2678999999999999888766 57999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcc-hhhccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~-~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
.++|+++|||||+|+||++....+-.+ ++.+- -+.|+|.|||+.. .+.-+|+|+||++|+|.+.|++.|+.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~e-i~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSE-IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHH-HHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999998876433 44332 3789999999975 46789999999999999999999998753
No 66
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.8e-39 Score=355.97 Aligned_cols=205 Identities=39% Similarity=0.614 Sum_probs=187.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|+++.|+.. .+++++|+||+|++|++++|+||+|||||||+++|.|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 48899999999632 25799999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCC
Q 000905 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1231)
Q Consensus 661 ayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1231)
+|++|++++++.|++||+.++.+ .+++++.+.++.+++.+.++.+|.|++|.+.+...+||||||||++||||+..+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754 35677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEec
Q 000905 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 740 IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G 800 (1231)
++||||||++||+.+.+.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLK-ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999876 4666655568999999999988889999999999998764
No 67
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=351.84 Aligned_cols=200 Identities=33% Similarity=0.576 Sum_probs=174.9
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------eEEE
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----------~iay 662 (1231)
..|+++|++|+|+.+ ++|+||||++++|++++|+||+|||||||+++|+|+.+|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 358999999999642 699999999999999999999999999999999999999999999876 4999
Q ss_pred EeCC---CcCCCCCHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 663 VSQT---SWIQSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 663 v~Q~---~~lf~~TIreNI~fg~~-----------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
|||. .|=|..||+|=+.+|.. -|.++++++++..++.+..+ ..|| .|||||+||+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHHHH
Confidence 9995 47899999999998842 14589999999999985433 2344 5999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHH
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
-|||||.++||+++|||||++||+++++.|+ +.+.++. +|+|+++|||+++.+ ..+|+|+.|+ +++...|+.+|..
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~-~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIY-DLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 9999999999999999999999999999987 4665544 499999999999975 5699999994 6788999999987
Q ss_pred hc
Q 000905 807 LA 808 (1231)
Q Consensus 807 ~~ 808 (1231)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
No 68
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=372.09 Aligned_cols=206 Identities=23% Similarity=0.415 Sum_probs=173.6
Q ss_pred CCcEEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------
Q 000905 592 DRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----------- 658 (1231)
+..|+++|++|+|+... ..++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34689999999996421 24699999999999999999999999999999999999999999999875
Q ss_pred ------------------eEEEEeCCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCcc
Q 000905 659 ------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLT 711 (1231)
Q Consensus 659 ------------------~iayv~Q~~--~lf~~TIreNI~fg~~---~~~~----~~~~vl~~~~L~~di~~lp~G~~T 711 (1231)
.|+||+|+| ++|+.||+|||.||.. .+++ +..+.++.++|.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 279999998 7999999999998742 2332 2333444444421 2
Q ss_pred cccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchh-hccCeEE
Q 000905 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRIL 789 (1231)
Q Consensus 712 ~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l-~~aD~Ii 789 (1231)
..+..+.+||||||||++||||+.++|+|+|||||||+||+.+.+.+. +.+... .+++|+|+|||+++.+ ..||+|+
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 345778899999999999999999999999999999999999999876 456544 3689999999999976 5699999
Q ss_pred EEeCCeEeEecChHHHHhc
Q 000905 790 VLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 790 vl~~G~I~~~Gt~~eL~~~ 808 (1231)
+|++|+|++.|+++++.+.
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999998764
No 69
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-39 Score=345.27 Aligned_cols=192 Identities=28% Similarity=0.417 Sum_probs=164.3
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
++++|++..|..+. ..++|+|+||+|++||.+||+|||||||||||++|-|+-.|++|+|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56899999886432 24799999999999999999999999999999999999999999999998
Q ss_pred --eEEEEeCCCcCC-CCCHHHHHhc----CCCC---CHHHHHHHHHHhcchHHHh-cCCCCCcccccCCCCcCChHHHHH
Q 000905 659 --SIAYVSQTSWIQ-SGSIRDNILY----GKPM---DKARYDKAIKACALDKDIN-NFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 --~iayv~Q~~~lf-~~TIreNI~f----g~~~---~~~~~~~vl~~~~L~~di~-~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
+||||+|+..|. +-|++|||.+ .... .+++.++.++..+|.+... .. ...||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-----------p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK-----------PSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC-----------chhcCHHHHHH
Confidence 499999998876 5699999984 3222 2556777777778876554 33 45799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchhhccCeEEEEeCCeEeE
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~ 798 (1231)
||||||+..+|+|++.||||++||.++++.+++ .+... ..|+|+|+|||+......|||++.|+||++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~-ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLE-LLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999875 45544 34899999999999999999999999999544
No 70
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.1e-39 Score=376.27 Aligned_cols=202 Identities=26% Similarity=0.367 Sum_probs=174.4
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
|+++|++++|+.++ ..++|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 34799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 -~iayv~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
.|+|++|++.++. .|++|||.|+.. .+ +++..++++..+|.+..+. ....||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 3999999999985 799999987532 22 3456677777777654443 34689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHH
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
||||+.++|+++|||||||+||+.+.+.+. +.++... .++|+|+|||+++.++. ||+|++|++|+|++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~-~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSIL-ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999886 4565543 38999999999999854 9999999999999999999997
Q ss_pred hc
Q 000905 807 LA 808 (1231)
Q Consensus 807 ~~ 808 (1231)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 64
No 71
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-39 Score=338.28 Aligned_cols=210 Identities=27% Similarity=0.429 Sum_probs=182.4
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
...|++++++++|. ++.+++|+||+|++||.++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 45799999999995 35799999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEeCCCcCCCC-CHHHHHhcCC----CCCHHHHH----HHHHHhcchHH-HhcCCCCCcccccCCCCcCChHHH
Q 000905 659 ---SIAYVSQTSWIQSG-SIRDNILYGK----PMDKARYD----KAIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ---~iayv~Q~~~lf~~-TIreNI~fg~----~~~~~~~~----~vl~~~~L~~d-i~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
++|++.|+.-||+. ||+||+.|-- ..+++.++ .-+++++|..+ .+.+| ..||||.+
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 49999999999976 9999999832 24554444 45788999888 66666 46999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecCh
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~ 802 (1231)
.|+|||||+..||+|+++|||||+|||.+... |++.|+.+. -+-|+|+|||+++.+ .-||+|+++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~-~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGV-IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHH-HHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999986 567776543 388999999999875 55899999999999999999
Q ss_pred HHHHhcCch-HHHHH
Q 000905 803 QELLLAGTA-FEQLV 816 (1231)
Q Consensus 803 ~eL~~~~~~-~~~l~ 816 (1231)
+|+.+.+.. .++++
T Consensus 231 ~el~~sd~P~v~qf~ 245 (263)
T COG1127 231 EELLASDDPWVRQFF 245 (263)
T ss_pred HHHHhCCCHHHHHHh
Confidence 999987644 34444
No 72
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-40 Score=370.87 Aligned_cols=202 Identities=30% Similarity=0.435 Sum_probs=179.4
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEE
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~ia 661 (1231)
..++++|++.+|. +..+++|+||+|++||++++.|||||||||+|++|.|+.+|++|+|.++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4689999999996 35899999999999999999999999999999999999999999999999 499
Q ss_pred EEeCCCcCCC-CCHHHHHhcCCC----CC-H---HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHH
Q 000905 662 YVSQTSWIQS-GSIRDNILYGKP----MD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1231)
Q Consensus 662 yv~Q~~~lf~-~TIreNI~fg~~----~~-~---~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLAR 732 (1231)
+|+|+.-||. .||+|||.||.. .. + +++.++++..+|.+.-+.. ...|||||+|||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----------p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK-----------PHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC-----------hhhhChHHHHHHHHHH
Confidence 9999999995 699999999976 22 2 4889999999998865544 4689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcc-hhhccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 733 Aly~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~-~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
||..+|+++|||||+||||.+...++-.+ ++.. ..|.|.|+|||+-+ .+..+|+|+||++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~E-lk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999886444 3322 23999999999986 58899999999999999999999999764
No 73
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-39 Score=374.23 Aligned_cols=202 Identities=30% Similarity=0.443 Sum_probs=177.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iay 662 (1231)
.++++|++++|+. +.++|+|+||++++||.++|+||||||||||+++|.|+.+|++|+|.++| .|+|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3789999999942 24799999999999999999999999999999999999999999999998 3999
Q ss_pred EeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
|+|++.+|. .|++|||.|+.. .+ +++.+++++..+|.+..+..| .+||||||||++||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999995 699999998743 22 356778888888877666554 48999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
+++|+++|||||||+||+.+.+++.+ .++...+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRL-EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999998764 4555433 79999999999865 579999999999999999999998753
No 74
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-39 Score=351.41 Aligned_cols=201 Identities=28% Similarity=0.490 Sum_probs=180.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|++|.|+++ .++|+|+|++|++||.++|+|++|||||||++++.|+++|++|+|.++| +
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999765 6899999999999999999999999999999999999999999999887 3
Q ss_pred EEEEeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 660 iayv~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
||||.|+| .+|..||.|.|.||.+ .+ +++.+++++.|++.+..+.- -.+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHh
Confidence 99999999 7999999999999964 33 35688899999998875544 46899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHh
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|.+|..+|+++|||||||+||+...+.+.+ .++++. + ++|+|++||+++.+.. ||++++|++|+++.+|+++|+.+
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999874 455543 3 6899999999998766 99999999999999999988876
Q ss_pred c
Q 000905 808 A 808 (1231)
Q Consensus 808 ~ 808 (1231)
.
T Consensus 229 ~ 229 (235)
T COG1122 229 D 229 (235)
T ss_pred h
Confidence 4
No 75
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-39 Score=356.70 Aligned_cols=200 Identities=27% Similarity=0.409 Sum_probs=170.2
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
++++|+++.|+. +++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999953 4799999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCcCCCC-CHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 659 SIAYVSQTSWIQSG-SIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 ~iayv~Q~~~lf~~-TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
.|+|++|++.+++. |++||+.++.. .+ +++..++++.+++.+..+ ....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 28999999999886 99999987632 22 234566677776654333 334579999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHH
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
||||+.++|+++||||||++||+++.+.+. +.++... .++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVID-DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999999876 4565543 3899999999999875 59999999999999999999987
Q ss_pred hcC
Q 000905 807 LAG 809 (1231)
Q Consensus 807 ~~~ 809 (1231)
...
T Consensus 226 ~~~ 228 (235)
T cd03261 226 ASD 228 (235)
T ss_pred CCC
Confidence 543
No 76
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=349.42 Aligned_cols=201 Identities=32% Similarity=0.464 Sum_probs=175.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.|.++|++..|+. .++++|||++|+.||++|+.|||||||||||++|.|+..|++|+|.++| +
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4778888888863 4789999999999999999999999999999999999999999999998 4
Q ss_pred EEEEeCCCcCC-CCCHHHHHhcCCC---------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 660 IAYVSQTSWIQ-SGSIRDNILYGKP---------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 660 iayv~Q~~~lf-~~TIreNI~fg~~---------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
||+|.|+.-+| ..||+|||.||.+ -.+.++.+.++.|+|+..-+.- ...||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry-----------P~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY-----------PAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcC-----------chhcChHHHHHHH
Confidence 99999999887 5799999999973 2356788889999987654444 4689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcch-hhccCeEEEEeCCeEeEecChHHHH
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
||||+...|++||||||++|||+++.+.+ ++-++... -+-|+++|||+.+. ++.||+|++|++|+|.+.|+++|+.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~l-r~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKEL-RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHH-HHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999875 44444432 37899999999975 6789999999999999999999997
Q ss_pred hcC
Q 000905 807 LAG 809 (1231)
Q Consensus 807 ~~~ 809 (1231)
...
T Consensus 227 ~~P 229 (345)
T COG1118 227 DHP 229 (345)
T ss_pred cCC
Confidence 653
No 77
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=331.60 Aligned_cols=503 Identities=16% Similarity=0.158 Sum_probs=324.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1231)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1231)
..++|.+++.++....+.+...+.+. .++-.+-++..+.++.....+.+++++.+..++.+..... ....+|.+
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~l---g~t~~gq~ 78 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQL---GLTTLGQH 78 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45678888888766655554444332 2332222333222222111112222222222222221111 11223444
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1231)
Q Consensus 349 ~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1231)
.-..++..+.+|.+.-|....++.+++.++..++.|+..+.-....+.....+.+-++.+...|+++.+...+..++.++
T Consensus 79 ~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~iv 158 (546)
T COG4615 79 FIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIV 158 (546)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44445555678888888877888899999999999999987544444444444444445566666666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHH-H
Q 000905 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLI-ESRREKEFKWLSEAQLRKAYG-T 504 (1231)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~--~f~~~i-~~~r~~e~~~l~~~~~~~~~~-~ 504 (1231)
+....+.....+..+...+..+..|+..+..+.+++|-|.++...-.. .+.+.. .+.++.+- ...+.+.+. .
T Consensus 159 v~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~~l 234 (546)
T COG4615 159 VTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFHLL 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHHHH
Confidence 555555555555556666667777888899999999999999875322 222222 12222211 111111111 1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 000905 505 VIYWMSPTII---SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1231)
Q Consensus 505 ~~~~~~~~~~---~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~~e~~~~ 581 (1231)
...|....+. ..+.|... ..+ -+ +...+.+....+-.++.|+.++...+..+.+|.++++||.++-..|+..+-
T Consensus 235 a~~~~ni~l~~lIGlvf~lal-~~~-w~-st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~ 311 (546)
T COG4615 235 AVNWSNIMLLGLIGLVFWLAL-SLG-WA-STNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF 311 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhc-cc-hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC
Confidence 1222221111 11211111 111 11 112333333344457899999999999999999999999997654433211
Q ss_pred hhhhccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe--
Q 000905 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-- 659 (1231)
Q Consensus 582 ~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~-- 659 (1231)
. +....++-..|+++||.|+|++. ..-+.-||++|++||++-|+|.+||||||++++|.|+|.|++|+|.+||.
T Consensus 312 ~--~~q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV 387 (546)
T COG4615 312 P--RPQAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (546)
T ss_pred C--CCCcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC
Confidence 1 11111234679999999999864 37788999999999999999999999999999999999999999999993
Q ss_pred -----------EEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 660 -----------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 660 -----------iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
++-|.-|-|+|+.++- ++. .+++.+++-++.-.+..-.+ +.+|--+ -..||-|||.|
T Consensus 388 ~~e~ledYR~LfSavFsDyhLF~~ll~-----~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKR 456 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKR 456 (546)
T ss_pred CCCCHHHHHHHHHHHhhhHhhhHhhhC-----CccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHH
Confidence 6667778888876541 222 46777777777777665433 3334322 24699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhhccCeEEEEeCCeEeEe
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~ 799 (1231)
+|+--|++-+.|||+|||=-+-=||+-.+...+..+-. ...|||++.|||+-++...|||++.|+||+++|.
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 99999999999999999999999999988766554422 2369999999999999999999999999999985
No 78
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.8e-39 Score=374.83 Aligned_cols=188 Identities=27% Similarity=0.371 Sum_probs=163.1
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------------eEEEEeCCCcCCC-
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS- 671 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------------~iayv~Q~~~lf~- 671 (1231)
+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .|+||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 5699999999999999999999999999999999999999999999987 3999999999997
Q ss_pred CCHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEe
Q 000905 672 GSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1231)
Q Consensus 672 ~TIreNI~fg~~~---~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLD 744 (1231)
.||+|||.|+.++ + .++..++++.++|..... ....+|||||||||+||||++++|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-----------~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-----------RYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999987542 2 245566677776655443 445589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhc
Q 000905 745 DPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 745 ep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|||||||+.+.+++.+.+..-. ..++|+|+|||+++.+ +.||+|++|++|++++.|+++|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999876443322 2489999999999975 66999999999999999999999875
No 79
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-38 Score=361.64 Aligned_cols=203 Identities=26% Similarity=0.395 Sum_probs=176.9
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++++|+....+++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999643234699999999999999999999999999999999999999999999988 38
Q ss_pred EEEeCCCc--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 661 ayv~Q~~~--lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+||+|+|. ++..||+|||.|+.. .+ +++.+++++..+|.+..+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 667899999998742 23 356778888888876655433 58999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||++++|+++||||||++||+.+.+.+. +.++... .|+|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999998876 4566553 38999999999998888999999999999999999988765
No 80
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.4e-38 Score=348.21 Aligned_cols=198 Identities=42% Similarity=0.796 Sum_probs=180.1
Q ss_pred EEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------------
Q 000905 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1231)
Q Consensus 596 ~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----------------- 658 (1231)
.+.|++|+|+++ .++++|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 568899999754 5799999999999999999999999999999999999999999999865
Q ss_pred eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC
Q 000905 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1231)
Q Consensus 659 ~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1231)
.++|++|+|.+++.|++|||.++.+.++++.+++++.+++.+.++.+|.|++|.++....+||||||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 38999999999999999999998777777788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHhc-CCcEEEEEccCcchhhccCeEEEEeCCe
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNE-CVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~-~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~ 795 (1231)
+++||||||++||+.+.+.+.+. .+.... +++|+|++||+.+.++.||++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999998887653 343332 4799999999999999999999999984
No 81
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-39 Score=336.15 Aligned_cols=203 Identities=26% Similarity=0.430 Sum_probs=173.0
Q ss_pred cEEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
.++++|+++.|+... ..++|+||||+|.+||.++|+|+||||||||.++|+|+.+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997431 12599999999999999999999999999999999999999999999998
Q ss_pred eEEEEeCCCcC-C--CCCHHHHHhc-----CCCCCHHHHHHHHHHhcchHHH-hcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 659 SIAYVSQTSWI-Q--SGSIRDNILY-----GKPMDKARYDKAIKACALDKDI-NNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 ~iayv~Q~~~l-f--~~TIreNI~f-----g~~~~~~~~~~vl~~~~L~~di-~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
.|-+|+|||.- + .-||++-|.= |.+-.+++..++++..+|.+.. ...| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 38999999973 2 3588876642 2223456789999999997654 3444 569999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHH
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
|||||.-+|+++||||||||||+.+.+.|++ .+....+ +-|.|+|||+++.+.+ ||||.||++|+|+|.++-+++.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~Iln-lL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILN-LLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHH-HHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 9999999999999999999999999999985 4555444 5599999999998765 9999999999999999999998
Q ss_pred hc
Q 000905 807 LA 808 (1231)
Q Consensus 807 ~~ 808 (1231)
..
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 76
No 82
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=352.78 Aligned_cols=439 Identities=18% Similarity=0.257 Sum_probs=302.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHH------HHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHH
Q 000905 341 GSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGE------IVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF 413 (1231)
Q Consensus 341 ~~~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~------iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~ 413 (1231)
..+++..+.|..|...+.+|-+.-...++- ...|+ .=+|++.|+..+.+... ....+....++++.-..+||
T Consensus 109 L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l-~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw 187 (604)
T COG4178 109 LNQMLRLRWREWLTKDLLDRWLDPRRYYRL-AQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILW 187 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHH-HhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999998876643332 22221 23588899887766433 23333444444544455566
Q ss_pred HHHHHH---------HHHHHHH--HHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 000905 414 GVVGLG---------ALPGLVL--FLICGLL----NVPFAKILQKCQSE-FMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1231)
Q Consensus 414 ~~lg~~---------~l~gl~~--~~~~~~~----~~~~~~~~~~~~~~-~~~~~d~r~~~~~E~L~gir~IK~~~~E~~ 477 (1231)
.+.|.. .++|..+ +++..++ ...+++.+-+...+ .....|-|.. +..+-++...|-+|+-|+.
T Consensus 188 ~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~-Lvrv~enaE~IAly~GE~~ 266 (604)
T COG4178 188 SLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS-LVRVRENAEAIALYRGEKV 266 (604)
T ss_pred HccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH-HHHHHhhHHHHHHhcCcHH
Confidence 443311 1111111 1111122 22333333332222 2222334444 3446677888889988866
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 000905 478 FKSLIESRREKEFKWLSEAQL----RKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIP 553 (1231)
Q Consensus 478 f~~~i~~~r~~e~~~l~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~ 553 (1231)
-++++++.-..=++..++... ...++....++++ ++.. ....-....+.++.|.+..+...|+.+...++.+-
T Consensus 267 Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P~--li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi 343 (604)
T COG4178 267 ERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV-VLPI--LIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFI 343 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH-HHHH--HhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444322221211111110 0111111111111 1111 11111122478999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccC---CCCchhhhcc-----ccCCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeE
Q 000905 554 EALSIMIQVKVSFDRINAFLLDHE---LNNDDVRRIS-----LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQK 625 (1231)
Q Consensus 554 ~~i~~~~~a~vs~~Ri~~fl~~~e---~~~~~~~~~~-----~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~ 625 (1231)
..+..+.+-++++.|+.+|-..-+ .++....... ....+..|+++|++..-|++ .+.+++.||++++||.
T Consensus 344 ~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~ 421 (604)
T COG4178 344 DNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGER 421 (604)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCCE
Confidence 999999999999999999974321 1110000000 01114689999999987654 4899999999999999
Q ss_pred EEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCCCCHHHHHhcCCC---CCHHHHHHHHHHhcchH
Q 000905 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKACALDK 700 (1231)
Q Consensus 626 vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~~TIreNI~fg~~---~~~~~~~~vl~~~~L~~ 700 (1231)
+.|.|+||||||||+++|.|++|--+|+|.... .+-|+||.|++..||+||-|++-+. ++++++.+++..|+|.+
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~ 501 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence 999999999999999999999999999998873 4899999999999999999998653 68999999999999999
Q ss_pred HHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcc
Q 000905 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780 (1231)
Q Consensus 701 di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~ 780 (1231)
..+.+.+-++ =..-||||||||+++||.++++|++++|||+|||||.+++..+++ .+++.+++.|+|-|.||..
T Consensus 502 L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvISV~Hr~t 575 (604)
T COG4178 502 LAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVGHRPT 575 (604)
T ss_pred HHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEEeccchh
Confidence 9998765443 467899999999999999999999999999999999999999874 6888899999999999999
Q ss_pred hhhccCeEEEEe
Q 000905 781 FLSEVDRILVLE 792 (1231)
Q Consensus 781 ~l~~aD~Iivl~ 792 (1231)
.....++.+-++
T Consensus 576 l~~~h~~~l~l~ 587 (604)
T COG4178 576 LWNFHSRQLELL 587 (604)
T ss_pred hHHHHhhheeec
Confidence 887777766554
No 83
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.4e-38 Score=350.27 Aligned_cols=204 Identities=29% Similarity=0.458 Sum_probs=182.2
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
.+.++++|++++|+.....++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4679999999999743234799999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 659 SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 659 ~iayv~Q~~~lf~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
.++|++|++.+|+.|++||+.++.. .+.+++.+..+...+.+.++.+|.|.++.+.++..+||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999998754 334445555666778899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeE
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I 796 (1231)
|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQ-QALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999875 566666567999999999999888999999999975
No 84
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.7e-39 Score=352.59 Aligned_cols=198 Identities=31% Similarity=0.455 Sum_probs=170.4
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC-----cCCCcEEEEcC-----------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-----PKISGTVNLYG----------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~-----~~~~G~I~v~g----------- 658 (1231)
|+++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|++ +|.+|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999953 47999999999999999999999999999999999999 99999999877
Q ss_pred ----eEEEEeCCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ----~iayv~Q~~~lf~~TIreNI~fg~~---~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.++|++|++.+++.|++||+.++.. . + +++..++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 3899999999998999999987532 1 1 3456777888887665544322 5689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
|++||||++++|+++||||||++||+.+.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIE-ELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999876 56666544589999999999865 5999999999999999987653
No 85
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=368.93 Aligned_cols=202 Identities=27% Similarity=0.369 Sum_probs=175.9
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEE
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~ia 661 (1231)
..|+++|++++|+. .++|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++| .|+
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 36899999999953 4689999999999999999999999999999999999999999999988 499
Q ss_pred EEeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 662 yv~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
||+|++.+|. .|++|||.|+.. .+ +++.+++++..++.+..+. ....|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r-----------~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR-----------YVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999996 599999999743 22 3466777777777654433 346899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
++++|+++|||||||+||+.+.+.+. +.++...+ ++|+|+|||+.+.+ ..||+|++|++|+|++.|+++++.+..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999875 45655543 89999999999875 669999999999999999999998653
No 86
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=361.38 Aligned_cols=205 Identities=25% Similarity=0.407 Sum_probs=174.0
Q ss_pred cEEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
.++++|++++|+... .+++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996432 24799999999999999999999999999999999999999999999877
Q ss_pred --eEEEEeCCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 --SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 --~iayv~Q~~--~lf~~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
.|+||||+| .+++.|++|||.|+.. .++ ++++++++.++|.. .+........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 389999998 6889999999998642 232 34567777777751 112335567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHH
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
++||||+..+|+++||||||++||+++.+.+. +.+.... .++|+|+|||+++.+ ..||+|++|++|++++.|+.++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999876 4666553 389999999999987 5699999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13637 232 VFKE 235 (287)
T ss_pred HHhC
Confidence 8654
No 87
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.2e-38 Score=342.65 Aligned_cols=189 Identities=25% Similarity=0.482 Sum_probs=167.5
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------e
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ 659 (1231)
+.++++|++++|+.. ..++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999642 24799999999999999999999999999999999999999999999987 4
Q ss_pred EEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCC
Q 000905 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1231)
Q Consensus 660 iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1231)
|+||+|+|.+|++|++|||.+..+++++++.++++ ++++..+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998766555554444333 346788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecC
Q 000905 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 740 IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt 801 (1231)
++||||||++||+++.+.+. +.++...+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQ-KTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999998765 56666667899999999999988899999999999999886
No 88
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=360.89 Aligned_cols=203 Identities=24% Similarity=0.388 Sum_probs=174.2
Q ss_pred EEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
++++|++++|+... ..++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 14699999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ---~iayv~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.|+||+|+| .+++.|++|||.|+.. .+ .++++++++.++|.+++. .....+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 289999998 6889999999998742 22 245677788888764432 2345689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|++||||++.+|+++||||||++||+++.+.+. +.++... .|+|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~-~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMM-EMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999876 4565543 3899999999999874 59999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98754
No 89
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=359.88 Aligned_cols=203 Identities=22% Similarity=0.402 Sum_probs=173.7
Q ss_pred EEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
|+++|++|+|+++. .+++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 13699999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ---~iayv~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.|+||+|+| .+|+.|+.|||.|+.. .+ ++++.++++..+|.+++. .....+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCHHHHH
Confidence 279999998 7999999999998743 22 245667777777743322 2445789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
|++||||++.+|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~-~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMM-QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999998876 4565543 5899999999999874 699999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+...
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8753
No 90
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=353.06 Aligned_cols=204 Identities=26% Similarity=0.356 Sum_probs=177.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc---CCCcEEEEcC------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG------------ 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~---~~~G~I~v~g------------ 658 (1231)
.|+++|+++.|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 479999999999999999999999999999999999984 6899999987
Q ss_pred -eEEEEeCCCcCCCCCHHHHHhcCCC---------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 659 -SIAYVSQTSWIQSGSIRDNILYGKP---------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 659 -~iayv~Q~~~lf~~TIreNI~fg~~---------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
.++|+||++.+|+.|++|||.++.. .+++++.++++.+++.+++..+ ..+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 3899999999999999999987631 1234567788888887655432 3456789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHh
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
+||||++++|+++||||||++||+++.+.+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|+++|+..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIE-ELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999988865 56766667899999999999875 699999999999999999999875
Q ss_pred c
Q 000905 808 A 808 (1231)
Q Consensus 808 ~ 808 (1231)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
No 91
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-38 Score=350.05 Aligned_cols=199 Identities=30% Similarity=0.420 Sum_probs=170.1
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
++++|++++|+. +++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999963 4799999999999999999999999999999999999999999999987 38999
Q ss_pred eCCCcCCC-CCHHHHHhcCCCC-------C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 664 SQTSWIQS-GSIRDNILYGKPM-------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 664 ~Q~~~lf~-~TIreNI~fg~~~-------~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|+|.++. .|++|||.++... + +++.+++++..++.+... ....+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHH
Confidence 99999885 6999999986421 2 234455666666644333 34568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||++++|+++||||||++||+++.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELR-RWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999876 4665543 3799999999999764 5999999999999999999998653
No 92
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.5e-38 Score=367.21 Aligned_cols=202 Identities=27% Similarity=0.365 Sum_probs=177.7
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEE
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~ia 661 (1231)
..++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++| .++
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 45899999999963 4689999999999999999999999999999999999999999999998 399
Q ss_pred EEeCCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 662 YVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 662 yv~Q~~~lf~~-TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
||+|++.+|.. |++|||.|+.. .+ +++.+++++..++.+..+..| .+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999954 99999999753 22 346777888888877766655 5899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
++++|+++|||||||+||+++.+.+. +.++... .++|+|+|||+.+.+ ..||+|++|++|+|++.|+++++..+.
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999998865 4565544 389999999999874 679999999999999999999998753
No 93
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-38 Score=355.61 Aligned_cols=198 Identities=29% Similarity=0.463 Sum_probs=173.7
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++++|+. .+++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4889999999963 24699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 661 ayv~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|++|+| .+++.|++|||.|+.. .+ ++++.++++.++|.+..+..| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6889999999998742 22 356788888888876665554 37999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHH
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
||+.++|+++||||||++||+.+.+.+. +.++... +++|+|++||+++.+ +.||+|++|++|++++.|+.+++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLM-EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999876 4565543 489999999999987 56999999999999999998764
No 94
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.1e-38 Score=351.19 Aligned_cols=203 Identities=29% Similarity=0.429 Sum_probs=174.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC-----CcEEEEcC-----------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG----------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~-----~G~I~v~g----------- 658 (1231)
++++|++++|+. .++++|+||+|++||+++|+|++|||||||+++|.|+++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 36999999999999999999999999999999999999998 99999876
Q ss_pred ----eEEEEeCCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ----~iayv~Q~~~lf~~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.++|+||++++++.|++||+.++.. .+ +++.+++++..++.++++ ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 3899999999999999999987532 12 245666777777764332 1234566789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
|++||||++++|+++||||||++||+++.+.+. +.++...+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIE-ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999875 56766655699999999999875 5999999999999999999998
Q ss_pred Hhc
Q 000905 806 LLA 808 (1231)
Q Consensus 806 ~~~ 808 (1231)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 653
No 95
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-38 Score=354.94 Aligned_cols=203 Identities=26% Similarity=0.441 Sum_probs=178.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|+++.|+.. .+++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999632 35799999999999999999999999999999999999999999999988 38
Q ss_pred EEEeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 661 ayv~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|++|+| .+++.|++|||.++.. .+ +++..++++.++|.++++..| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 5678899999998632 22 345778888888887766554 48999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
||++.+|+++||||||++||+.+.+.++ +.+....+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVL-ETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999999999999999999999876 45665543 79999999999998889999999999999999999987653
No 96
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=352.87 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=175.9
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g--------- 658 (1231)
..++++|++++|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 35899999999953 469999999999999999999999999999999999874 5899999876
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC---C-----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~---~-----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.++|++|++.+|+.|++|||.++.. . .+++++++++.+++.+++. +..+....+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 3899999999999999999987531 1 2346677777777765443 23456678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChH
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||++||||++.+|+++||||||++||+++.+.+. +.++...+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIE-ELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999998875 56666656899999999999875 59999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 98754
No 97
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.8e-38 Score=366.20 Aligned_cols=201 Identities=30% Similarity=0.394 Sum_probs=175.5
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iay 662 (1231)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++| .|+|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999963 4689999999999999999999999999999999999999999999998 3999
Q ss_pred EeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
|+|++-+|. .|++|||.|+.. .+ +++.+++++..+|.+..+ .+..+||||||||++||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999999995 699999999743 22 346677777777765444 44568999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
.++|+++|||||||+||+.+.+++. +.++... .+.|+|+|||+.+.+ ..||+|++|++|++++.|+++|+.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999875 4555543 379999999999975 569999999999999999999998753
No 98
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-38 Score=357.42 Aligned_cols=203 Identities=22% Similarity=0.417 Sum_probs=171.2
Q ss_pred EEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
++++|++++|+++. .+++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 24699999999999999999999999999999999999999999999887
Q ss_pred ---eEEEEeCCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ---~iayv~Q~~--~lf~~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.|+||+|+| .+|+.|++|||.|+.. .+. ++..++++.++|..+. ......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQMR 152 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 379999997 6888999999998742 233 2334455555543221 23557789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|++||||++.+|+++||||||++||+.+.+.+. +.++.+. .|+|+|+|||+++.+ ..||+|++|++|+|++.|+++
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVM-RLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999875 4565543 489999999999987 469999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
++.++
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98764
No 99
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.8e-38 Score=349.24 Aligned_cols=198 Identities=22% Similarity=0.373 Sum_probs=167.4
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------eE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~i 660 (1231)
++++|++++|+. +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 4699999999999999999999999999999999999999999999887 28
Q ss_pred EEEeCCCcCCCC-CHHHHHhcCCCC-------------C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 661 AYVSQTSWIQSG-SIRDNILYGKPM-------------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 661 ayv~Q~~~lf~~-TIreNI~fg~~~-------------~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
+|+||++.++.+ |++|||.++... + .++..++++..++ +........+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCChhhCCH
Confidence 999999999886 999999876421 0 1233344444433 3334556778999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEec
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~G 800 (1231)
|||||++||||+..+|+++||||||++||+.+.+.+.+ .+.... +++|+|++||+++.+.. ||+|++|++|+|++.|
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE-LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeec
Confidence 99999999999999999999999999999999998764 555443 68999999999998855 9999999999999999
Q ss_pred ChHHHHh
Q 000905 801 NYQELLL 807 (1231)
Q Consensus 801 t~~eL~~ 807 (1231)
+++++..
T Consensus 226 ~~~~~~~ 232 (236)
T cd03219 226 TPDEVRN 232 (236)
T ss_pred CHHHhcc
Confidence 9998864
No 100
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-38 Score=350.99 Aligned_cols=205 Identities=29% Similarity=0.384 Sum_probs=174.7
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g--------- 658 (1231)
..++++|++++|++ +++|+|+||+|++||.++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46899999999963 4699999999999999999999999999999999999997 489999876
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.|+|++|++.+++.|++|||.++.. .+ +++..++++.+++.+.+ ++.. ..+..+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKL----NTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHH----hCCcccCCHHH
Confidence 3899999999999999999998642 12 34556667777764333 2222 34577999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChH
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||++||||++++|+++||||||++||+++.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999876 46666656899999999999874 59999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
++.+.
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 98753
No 101
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.5e-38 Score=344.15 Aligned_cols=198 Identities=24% Similarity=0.444 Sum_probs=170.1
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
++++|+++.|+.. ++++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999642 25799999999999999999999999999999999999999999999987 3899
Q ss_pred EeCCCcCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~lf-~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
++|++.++ +.|++||+.++.. .+ +++++++++.++|.+..+ ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999988 6799999987421 22 245677777777754432 23457999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHH
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
.++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIW-DLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999876 46666656799999999999886 4999999999999999998875
No 102
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.3e-38 Score=363.84 Aligned_cols=200 Identities=32% Similarity=0.445 Sum_probs=173.8
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .|+||
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 789999999963 4699999999999999999999999999999999999999999999987 49999
Q ss_pred eCCCcCCC-CCHHHHHhcCCC-------CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 664 SQTSWIQS-GSIRDNILYGKP-------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 664 ~Q~~~lf~-~TIreNI~fg~~-------~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|++.+|. .|++|||.|+.. .+ +++..++++..+|.+..+. +...||||||||++||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHHHH
Confidence 99999996 599999998742 12 3466677777777654443 3468999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||++++|+++|||||||+||+++.+++. +.++...+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++++..+
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELR-RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999876 45655543 78999999999975 55999999999999999999999865
Q ss_pred C
Q 000905 809 G 809 (1231)
Q Consensus 809 ~ 809 (1231)
.
T Consensus 228 p 228 (353)
T PRK10851 228 P 228 (353)
T ss_pred c
Confidence 3
No 103
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.8e-38 Score=365.73 Aligned_cols=202 Identities=28% Similarity=0.433 Sum_probs=176.2
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCC--cEEEEcC-----------e
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS--GTVNLYG-----------S 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~--G~I~v~g-----------~ 659 (1231)
+.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999963 469999999999999999999999999999999999999999 9999987 3
Q ss_pred EEEEeCCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 660 IAYVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 660 iayv~Q~~~lf~~-TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
|+||+|++.+|.. |++|||.|+.. .+ +++++++++..+|.+..+..| .+||||||||++||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999965 99999998642 22 346777888888876655544 48999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC---CcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHh
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE---KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~---~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
||+.++|+++|||||||+||+...+++.+ .++...+ |+|+|+|||+++.+ ..||+|++|++|++++.|+++|+.+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~-~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMRE-EIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999998754 4554432 78999999999975 5699999999999999999999987
Q ss_pred cC
Q 000905 808 AG 809 (1231)
Q Consensus 808 ~~ 809 (1231)
+.
T Consensus 229 ~p 230 (362)
T TIGR03258 229 AP 230 (362)
T ss_pred Cc
Confidence 53
No 104
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.2e-38 Score=344.04 Aligned_cols=189 Identities=24% Similarity=0.429 Sum_probs=162.8
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
++++|++++|+.+ .+++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999632 24699999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCcCCC-CCHHHHHhcCCC---C----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 659 SIAYVSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 ~iayv~Q~~~lf~-~TIreNI~fg~~---~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
.++|++|++.++. .|++||+.++.. . .++++.++++.+++.+..+..| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 3899999999886 599999987521 1 2456778888888876554433 4799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeE
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQI 796 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I 796 (1231)
|||++++|+++||||||++||+++.+.+.+ .+... .+++|+|+|||+++.+. .||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999998764 56554 34899999999999886 5899999999985
No 105
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.9e-38 Score=340.01 Aligned_cols=188 Identities=34% Similarity=0.515 Sum_probs=164.0
Q ss_pred EEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------eEEEEeC
Q 000905 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQ 665 (1231)
Q Consensus 596 ~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----------~iayv~Q 665 (1231)
+++|++++|+.. +++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++| .++|++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 367899999631 4799999999999999999999999999999999999999999999987 4899999
Q ss_pred CC--cCCCCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 666 TS--WIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 666 ~~--~lf~~TIreNI~fg~~---~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
+| .+++.|++||+.++.+ .++++..++++.+++.+..+..| ..||||||||++||||+..+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCCE
Confidence 98 5778999999998643 23467888999999876655444 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEe
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~ 797 (1231)
+||||||++||+++.+.+. +.++.. .+++|+|++||+++.+. .||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999998875 456554 46899999999999886 59999999999975
No 106
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-38 Score=366.83 Aligned_cols=200 Identities=26% Similarity=0.376 Sum_probs=174.3
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iay 662 (1231)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .|+|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4889999999963 4699999999999999999999999999999999999999999999987 3999
Q ss_pred EeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
|+|++.+|. .|++|||.|+.. .+ +++++++++.++|.+..+.. ..+||||||||++||||+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999986 599999998743 22 34677788888886655443 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhc
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
.++|+++|||||||+||+++.+.+.+ .++... .++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999998764 555543 389999999999876 56999999999999999999999764
No 107
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-38 Score=343.21 Aligned_cols=191 Identities=30% Similarity=0.416 Sum_probs=163.7
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
++++|++++|++ +++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999953 4799999999999999999999999999999999999999999999987 38999
Q ss_pred eCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 664 ~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
||++.++. .|++||+.++.. .+ +++++++++.+++.+..+. ...+||||||||++||||+.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR-----------YPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHHHHHHHh
Confidence 99998885 699999987632 12 2456677777777655443 34689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
++|+++||||||++||+++.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELR-EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999876 4565543 3899999999999864 59999999999998875
No 108
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=350.27 Aligned_cols=206 Identities=28% Similarity=0.417 Sum_probs=176.9
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC--------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g-------- 658 (1231)
.+.++++|++++|++ +++|+|+||+|++||.++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999963 469999999999999999999999999999999999986 5899998876
Q ss_pred -------eEEEEeCCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 -------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 -------~iayv~Q~~~lf~~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
+|+|++|++.+++.|++||+.++.. .+ +++.+++++..++.+++. +..++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 3899999999999999999987632 22 245667777777754432 2345678899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecCh
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~ 802 (1231)
||||++||||++++|+++||||||++||+.+.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIE-ELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999998875 46666556789999999999875 5999999999999999999
Q ss_pred HHHHhc
Q 000905 803 QELLLA 808 (1231)
Q Consensus 803 ~eL~~~ 808 (1231)
+++.+.
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 998754
No 109
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-38 Score=364.11 Aligned_cols=202 Identities=27% Similarity=0.392 Sum_probs=172.4
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
|+++|++++|+... ++++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999996321 35799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeCCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 -~iayv~Q~~~lf~-~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
.|+|++|++.++. .|++|||.++.. .++ ++..+.++..+|.+..+ ....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 3999999999886 699999987632 222 34556666666654333 345689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHH
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
||||++++|+++|||||||+||+.+.+.+. +.++... .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~-~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSIL-ELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999876 4565543 38999999999998765 9999999999999999999997
Q ss_pred hc
Q 000905 807 LA 808 (1231)
Q Consensus 807 ~~ 808 (1231)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 65
No 110
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=345.78 Aligned_cols=201 Identities=25% Similarity=0.389 Sum_probs=174.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999953 4699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCcCCCCCHHHHHhcCCCC---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 661 AYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 661 ayv~Q~~~lf~~TIreNI~fg~~~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
+|++|++.+++.|++||+.++... ++++..+.++.+++.++.. .....+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999986432 2456677777777753221 235668999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|+++||||||++||+.+.+.+. +.++... .++|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999988765 5665543 3899999999999876 5999999999999999999998754
No 111
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-38 Score=327.68 Aligned_cols=200 Identities=30% Similarity=0.443 Sum_probs=173.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
.|+++|++..||. ++.+|+||||+|++||.+||+|+|||||||||++|.|+.+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999974 46899999999999999999999999999999999999999999999988
Q ss_pred -eEEEEeCCCcCC-CCCHHHHHhcCCC------------CCHHHHH---HHHHHhcchHHHhcCCCCCcccccCCCCcCC
Q 000905 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP------------MDKARYD---KAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1231)
Q Consensus 659 -~iayv~Q~~~lf-~~TIreNI~fg~~------------~~~~~~~---~vl~~~~L~~di~~lp~G~~T~IGe~G~~LS 721 (1231)
+||+++|++-|- ..|+-+|++.|+- +++++.. ++++..++.+..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 499999999875 5699999998752 3444444 4455555554332 5778999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchh-hccCeEEEEeCCeEeE
Q 000905 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQ 798 (1231)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~ 798 (1231)
|||+|||+|||||+++|+|+|=|||+|+||+.+++++++ .++.. -.|.|+|+.-|++.+. +.||||+-|++|+|+.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~-~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD-ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 999999999999999999999999999999999999885 45433 4689999999999985 5699999999999999
Q ss_pred ecChHHHHh
Q 000905 799 SGNYQELLL 807 (1231)
Q Consensus 799 ~Gt~~eL~~ 807 (1231)
.|+.+|+-+
T Consensus 229 Dg~~~el~~ 237 (258)
T COG3638 229 DGPASELTD 237 (258)
T ss_pred eCChhhhhH
Confidence 999999754
No 112
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=356.50 Aligned_cols=203 Identities=25% Similarity=0.428 Sum_probs=172.0
Q ss_pred EEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
|+++|++++|+... ..++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996432 13699999999999999999999999999999999999999999998853
Q ss_pred -----------------------eEEEEeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCC
Q 000905 659 -----------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFD 706 (1231)
Q Consensus 659 -----------------------~iayv~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp 706 (1231)
.|+||+|+| .+++.|++|||.|+.. .+ +++..++++.++|.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 279999986 6888999999998742 22 34567777777775322
Q ss_pred CCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchh-hc
Q 000905 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SE 784 (1231)
Q Consensus 707 ~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l-~~ 784 (1231)
......+||||||||++||||+..+|+++||||||++||+...+.+. +.++.. .+|+|+|+|||+++.+ ..
T Consensus 159 ------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 ------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 12456789999999999999999999999999999999999988875 455544 3589999999999875 56
Q ss_pred cCeEEEEeCCeEeEecChHHHHhc
Q 000905 785 VDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 785 aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||+|++|++|+|++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998754
No 113
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-38 Score=342.75 Aligned_cols=196 Identities=32% Similarity=0.451 Sum_probs=167.2
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------eEEEEeC
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------~iayv~Q 665 (1231)
++++|++++|+... .+++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996421 14799999999999999999999999999999999999999999999987 4999999
Q ss_pred CCcCCC-CCHHHHHhcCCC---C----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 666 TSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 666 ~~~lf~-~TIreNI~fg~~---~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
++.++. .|++|||.++.. . .+++.+++++..++.+.+...| .+||||||||++||||++++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHHHHHcC
Confidence 999987 699999987532 1 2345677788888766555433 57999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEe--CCeEeEecCh
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLE--GGQITQSGNY 802 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~--~G~I~~~Gt~ 802 (1231)
|+++||||||++||+.+.+.++ +.+.... .++|+|++||+++.+ ..||+|++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999876 4565543 389999999999976 4599999999 7999998764
No 114
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.1e-38 Score=343.29 Aligned_cols=190 Identities=29% Similarity=0.443 Sum_probs=161.5
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
++++|++++|++.. .+++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 14799999999999999999999999999999999999999999999875
Q ss_pred --eEEEEeCCCcCCCC-CHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 659 --SIAYVSQTSWIQSG-SIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 659 --~iayv~Q~~~lf~~-TIreNI~fg~~~---~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
.++|++|++.+|.. |++||+.++... + ++++.++++..++.+.++ ....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 38999999999876 999999886431 1 345666677766654333 34568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeE
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I 796 (1231)
+||||++++|+++||||||++||+++.+.+. +.+.... +++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVM-ELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999998875 5666554 38999999999998889999999999975
No 115
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=350.06 Aligned_cols=206 Identities=24% Similarity=0.391 Sum_probs=177.0
Q ss_pred CCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC-------
Q 000905 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG------- 658 (1231)
Q Consensus 591 ~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g------- 658 (1231)
.++.|+++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3457999999999963 4799999999999999999999999999999999999975 899999877
Q ss_pred --------eEEEEeCCCcCCCCCHHHHHhcCCC---C--C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCC
Q 000905 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1231)
Q Consensus 659 --------~iayv~Q~~~lf~~TIreNI~fg~~---~--~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LS 721 (1231)
.++|++|++.+++.|++|||.++.. . + +++++++++.+++.+++. +.....+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 2899999999999999999987531 1 1 345677788777765442 22346678999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
||||||++||||++.+|+++||||||++||+++.+.+. +.++...+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVE-ELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999865 56766656789999999999874 58999999999999999
Q ss_pred ChHHHHh
Q 000905 801 NYQELLL 807 (1231)
Q Consensus 801 t~~eL~~ 807 (1231)
+++++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9999864
No 116
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-37 Score=346.89 Aligned_cols=198 Identities=30% Similarity=0.423 Sum_probs=168.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
++++|++++|+. ++++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 14799999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCcCCC-CCHHHHHhcCCC---------------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 659 SIAYVSQTSWIQS-GSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 659 ~iayv~Q~~~lf~-~TIreNI~fg~~---------------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
.++|+||++.+|. .|++||+.++.. .++++..++++..++.+. ....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 2899999998876 699999987531 112345555666655432 2345678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEe
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQS 799 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~ 799 (1231)
|||||++||||++++|+++|||||||+||+++.+.+. +.++... .++|+|++||+++.+. .||+|++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM-DLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999876 4565543 3899999999999887 6999999999999999
Q ss_pred cChHHHH
Q 000905 800 GNYQELL 806 (1231)
Q Consensus 800 Gt~~eL~ 806 (1231)
|+++++.
T Consensus 227 ~~~~~~~ 233 (241)
T cd03256 227 GPPAELT 233 (241)
T ss_pred cCHHHhh
Confidence 9999874
No 117
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=353.44 Aligned_cols=201 Identities=25% Similarity=0.456 Sum_probs=175.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
.++++|++++|+. ++++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 24799999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 659 SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 ~iayv~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
.++|++|+| .+++.|++|||.++.. ++ +++++++++.++|.+.. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 289999998 6789999999987532 22 34567777888876432 3557899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHH
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
||||++.+|+++||||||++||+.+.+.+. +.+....+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIM-KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999875 45655543 899999999999986 69999999999999999999987
Q ss_pred hc
Q 000905 807 LA 808 (1231)
Q Consensus 807 ~~ 808 (1231)
+.
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 64
No 118
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.3e-37 Score=346.55 Aligned_cols=198 Identities=31% Similarity=0.433 Sum_probs=169.2
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
++++|++++|+. ++++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 24799999999999999999999999999999999999999999999887
Q ss_pred eEEEEeCCCcCCC-CCHHHHHhcCCC---------------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 659 SIAYVSQTSWIQS-GSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 659 ~iayv~Q~~~lf~-~TIreNI~fg~~---------------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
.++|+||++.++. .|++||+.++.. .++++..++++.+++.+.+ .....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 2899999998886 699999987531 1134556666766665443 245678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEe
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQS 799 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~ 799 (1231)
|||||++||||++.+|+++||||||++||+.+.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVM-DYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999998875 4565543 3799999999999874 5999999999999999
Q ss_pred cChHHHH
Q 000905 800 GNYQELL 806 (1231)
Q Consensus 800 Gt~~eL~ 806 (1231)
|+++++.
T Consensus 228 ~~~~~~~ 234 (243)
T TIGR02315 228 GAPSELD 234 (243)
T ss_pred CCHHHhC
Confidence 9999863
No 119
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-38 Score=353.07 Aligned_cols=198 Identities=28% Similarity=0.400 Sum_probs=170.1
Q ss_pred EEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------------
Q 000905 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1231)
Q Consensus 596 ~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----------------- 658 (1231)
.++|++..|.. +++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 4689999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCcCCC-CCHHHHHhcCCC---C----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 659 SIAYVSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 ~iayv~Q~~~lf~-~TIreNI~fg~~---~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
+++|+||++.++. .|++|||.++.. . .++++.++++.++|.+.+...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 3899999999984 699999987531 1 2356777888888877666554 3799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHh
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|||++++|+++||||||++||+.+.+.+. +.+.... .|+|+|++||+++.+ ..||+|++|++|++++.|+++|+.+
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQ-DELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999876 4565543 379999999999986 4599999999999999999999875
Q ss_pred c
Q 000905 808 A 808 (1231)
Q Consensus 808 ~ 808 (1231)
.
T Consensus 251 ~ 251 (269)
T cd03294 251 N 251 (269)
T ss_pred C
Confidence 4
No 120
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=343.77 Aligned_cols=201 Identities=26% Similarity=0.405 Sum_probs=170.3
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
|+++|++++|+... ..++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67999999996421 12799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 -~iayv~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
.++|+||++.+|. .|++|||.++.. .+ .++..+.++..++.+..+ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 3899999999987 699999987532 22 234566666666654433 344689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHH
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
||||+.++|+++||||||++||+.+.+.+. +.+.... .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSIL-ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999875 4565543 3899999999999875 49999999999999999998876
Q ss_pred h
Q 000905 807 L 807 (1231)
Q Consensus 807 ~ 807 (1231)
+
T Consensus 230 ~ 230 (233)
T cd03258 230 A 230 (233)
T ss_pred c
Confidence 4
No 121
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.7e-37 Score=343.84 Aligned_cols=199 Identities=24% Similarity=0.394 Sum_probs=170.0
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
++++|++++|++ +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999953 4799999999999999999999999999999999999999999999987 3899
Q ss_pred EeCCCcC-CCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWI-QSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~l-f~~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
++|++.+ ++.|++||+.++.. .+. ++..+.++..++. .....+..+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 57899999987532 222 2334444444443 334566679999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
+++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999876 4565554 48999999999999888999999999999999999998765
No 122
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-37 Score=341.56 Aligned_cols=196 Identities=22% Similarity=0.394 Sum_probs=168.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
|+++|++++|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999953 4699999999999999999999999999999999999999999999987 3899
Q ss_pred EeCCCcCCCC-CHHHHHhcCCC---C----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWIQSG-SIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~lf~~-TIreNI~fg~~---~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
++|++.++.. |++|||.++.. . .+++.+++++..++.+..+.. ..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999988874 99999987421 1 234667788888886544432 357999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHH
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
+.+|+++||||||++||+++.+.+. +.+.... + ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999998876 4565543 3 789999999999876 4999999999999999988764
No 123
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=350.70 Aligned_cols=204 Identities=25% Similarity=0.416 Sum_probs=175.7
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++++|+.....++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48899999999743334699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 661 ayv~Q~~--~lf~~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|++|+| .+++.|+.|||.++.. .++ ++++++++.+++.+..+. ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4778999999987532 222 345777888887654433 3468999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
||+.++|+++||||||++||+.+.+.+. +.+....+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIM-RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 9999999999999999999999999876 45655543 89999999999998889999999999999999999987653
No 124
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.8e-37 Score=340.50 Aligned_cols=199 Identities=29% Similarity=0.479 Sum_probs=165.7
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------eE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~i 660 (1231)
|+++|++++|+. +++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999953 4799999999999999999999999999999999999999999999887 28
Q ss_pred EEEeCCCcCCCC-CHHHHHhcCCCC-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 661 AYVSQTSWIQSG-SIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 661 ayv~Q~~~lf~~-TIreNI~fg~~~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
+|++|++.++.. |++||+.++... . .++..++++... .++ .....+..+||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 999999999886 999999886542 1 122333333331 122 223456678999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHh
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
..+|+++||||||++||+++.+.+. +.++... +++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999876 4565543 5899999999999864 599999999999999999888753
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-37 Score=349.26 Aligned_cols=200 Identities=26% Similarity=0.456 Sum_probs=172.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------eE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~i 660 (1231)
++++|++++|+. ++++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 679999999953 24699999999999999999999999999999999999999999999887 28
Q ss_pred EEEeCCCc--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 661 ayv~Q~~~--lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|++|+|. +++.|++|||.++.. .+ ++++.++++..++.+... .....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999986 577899999988642 22 345666777777765443 34568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||++++|+++||||||++||+.+.+.+.+ .++... +|+|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLE-RIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999988764 565443 58999999999999989999999999999999999988653
No 126
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=348.50 Aligned_cols=207 Identities=24% Similarity=0.370 Sum_probs=178.1
Q ss_pred CCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC-------
Q 000905 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1231)
Q Consensus 591 ~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g------- 658 (1231)
....|+++|++++|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 17 EEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3456999999999952 579999999999999999999999999999999999996 5899998876
Q ss_pred --------eEEEEeCCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 659 --------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 659 --------~iayv~Q~~~lf~~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
.|+|++|++.+|..|++|||.++.. .+ ++++.++++.+++.+++. +..+....+|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~ 166 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSG 166 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCH
Confidence 3899999999999999999988532 12 345667778888765543 234567889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecC
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt 801 (1231)
|||||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLE-ETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999988875 46666666899999999999874 599999999999999999
Q ss_pred hHHHHhc
Q 000905 802 YQELLLA 808 (1231)
Q Consensus 802 ~~eL~~~ 808 (1231)
.+++.+.
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14237 246 TRNIFTN 252 (267)
T ss_pred HHHHhcC
Confidence 9998753
No 127
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=342.28 Aligned_cols=196 Identities=24% Similarity=0.372 Sum_probs=167.0
Q ss_pred cEEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
.++++|++++|+.+. .+++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 24799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCCcCCCC-CHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 ---SIAYVSQTSWIQSG-SIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 ---~iayv~Q~~~lf~~-TIreNI~fg~---~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
.++|++|++.++.. |++||+.++. ..+ +++..++++.+++.+.. .....+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 28999999998875 9999998742 122 34566677777664433 34456899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeEeEecC
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt 801 (1231)
++||||++.+|+++||||||++||+.+.+.+. +.+.... +|+|+|++||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIF-QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999875 4565543 4899999999999999999999999999998875
No 128
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-37 Score=350.07 Aligned_cols=203 Identities=24% Similarity=0.381 Sum_probs=177.5
Q ss_pred cEEEEeeeEeeCCCC---CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------
Q 000905 594 SVKIQEGNFSWDPEL---AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~---~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------ 658 (1231)
-++++|++++|+... .+++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 488999999996421 25799999999999999999999999999999999999999999999986
Q ss_pred --eEEEEeCCCc--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 --~iayv~Q~~~--lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
.++|++|+|. +++.|+.||+.|+.. .+ +++++++++.++|.+..+..| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 3899999984 777899999998632 12 356788888888877666544 5899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHH
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
++||||++++|+++||||||++||+++.+.+. +.+.... .++|+|++||+++.+..||++++|++|+|++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999876 5666553 38999999999999888999999999999999999998
Q ss_pred Hhc
Q 000905 806 LLA 808 (1231)
Q Consensus 806 ~~~ 808 (1231)
..+
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 765
No 129
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.4e-37 Score=336.00 Aligned_cols=191 Identities=23% Similarity=0.369 Sum_probs=167.0
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
|+++|++++|+. +++|+|+||++++|+.++|+|++|||||||+++|.|+.+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999953 4799999999999999999999999999999999999999999999987 38999
Q ss_pred eCCCcCC-CCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCC
Q 000905 664 SQTSWIQ-SGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1231)
Q Consensus 664 ~Q~~~lf-~~TIreNI~fg~~---~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1231)
||++.++ +.|++||+.++.. .++++.+++++..++.+..+ .....||||||||++||||++++|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999887 5799999987532 35677888888888876543 3456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 740 IYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 740 IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999876 4565543 5899999999999886 59999999999998865
No 130
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-37 Score=350.82 Aligned_cols=203 Identities=22% Similarity=0.359 Sum_probs=176.3
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCC---cEEEEcC-----------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS---GTVNLYG----------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~---G~I~v~g----------- 658 (1231)
..++++|++++|++. .+++|+|+||+|++||.++|+|++|||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 458999999999643 3469999999999999999999999999999999999999998 8999887
Q ss_pred --eEEEEeCCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 --~iayv~Q~~~--lf~~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
.|+|++|+|. +++.|++|||.|+.+ .++ +++.++++.++|.+..+..| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 3899999984 678999999998642 233 45677888888876555444 6899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHH
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
++||||++++|+++||||||++||+.+.+.+.+ .+.... .++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999998764 565543 38999999999999888999999999999999999998
Q ss_pred Hhc
Q 000905 806 LLA 808 (1231)
Q Consensus 806 ~~~ 808 (1231)
.+.
T Consensus 231 ~~~ 233 (282)
T PRK13640 231 FSK 233 (282)
T ss_pred hcC
Confidence 654
No 131
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=346.52 Aligned_cols=204 Identities=26% Similarity=0.406 Sum_probs=172.7
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc--C---CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~--~---~~G~I~v~g---------- 658 (1231)
.++++|++++|+. +++|+|+||+|++||.++|+|++|||||||+++|.|+.+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 469999999999999999999999999999999999853 6 589999876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~---~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|+||++.+|+.|++||+.++.. . + +++..++++.+++.+.+. +..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 3999999999999999999987521 1 1 234455666666654332 234566789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||+.++|+++||||||++||+++.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIE-ETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH-HHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999876 46666656799999999998764 599999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8754
No 132
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=346.76 Aligned_cols=205 Identities=28% Similarity=0.425 Sum_probs=173.7
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc--C---CCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~--~---~~G~I~v~g--------- 658 (1231)
..++++|+++.|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 35899999999963 469999999999999999999999999999999999987 3 589998876
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~----~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.++|++|++.+++.|++||+.++.. .++ ++..++++..++.+++. +.....+.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 3899999999999999999987642 122 23455666666654432 23346678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChH
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE-ELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999998865 56776666899999999999875 59999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
++.++
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98654
No 133
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=346.41 Aligned_cols=204 Identities=25% Similarity=0.428 Sum_probs=174.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCC---CcC--CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPK--ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~---~~~--~~G~I~v~g---------- 658 (1231)
.++++|+++.|+. +++|+|+||++++||.++|+|++|||||||+++|.|+ ++| ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5889999999963 4699999999999999999999999999999999996 454 589998876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC----C----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~----~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|+||++.+++.|++|||.++.. . .+++.+++++.+++.++++ +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 3899999999999999999987532 1 1245667777777755443 234467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+.+.+.+. +.++...+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVE-ELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999875 56766667899999999999874 599999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8754
No 134
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-37 Score=347.38 Aligned_cols=203 Identities=25% Similarity=0.422 Sum_probs=174.2
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------e
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ 659 (1231)
..++++|++++|+++ ++++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999632 35799999999999999999999999999999999999999999999887 3
Q ss_pred EEEEeCCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 660 iayv~Q~~--~lf~~TIreNI~fg~~---~~~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
++|++|+| .+++.|++|||.++.. ++.+ +..++++..++.+.++. ...+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHH
Confidence 89999998 4667899999988632 3333 35667777777665543 346999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|||++++|+++||||||++||+.+.+.++ +.+.... + ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIK-KIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999876 4565543 3 5899999999998888999999999999999999988754
No 135
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-37 Score=361.47 Aligned_cols=202 Identities=26% Similarity=0.363 Sum_probs=174.5
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEE
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~ia 661 (1231)
..++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++| .|+
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 45999999999953 4699999999999999999999999999999999999999999999998 389
Q ss_pred EEeCCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 662 YVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 662 yv~Q~~~lf~~-TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
||+|++-+|.. |++|||.|+.. .+ ++++.++++..++.+..+.. ..+|||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRK-----------PHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999965 99999998742 22 34566777777776554443 35799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
++.+|+++|||||||+||+++.+.+.+ .++... .+.|+|+|||+.+.+ ..||+|++|++|+|++.|+++|+..+.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQL-EVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 999999999999999999999988754 344432 379999999999974 669999999999999999999998753
No 136
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=346.35 Aligned_cols=204 Identities=28% Similarity=0.447 Sum_probs=173.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g---------- 658 (1231)
.++++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4889999999953 479999999999999999999999999999999999997 4799998876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~---~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.+|+.|++|||.++.. . + ++++.++++.+++.++.. ........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHH
Confidence 2899999999999999999987632 1 1 234566677766643211 123456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIE-ETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHH-HHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999998875 566666567999999999998754 99999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8654
No 137
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.9e-37 Score=326.92 Aligned_cols=166 Identities=34% Similarity=0.610 Sum_probs=152.6
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe------------EEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~------------iay 662 (1231)
|+++|++++|+.. ++++++|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999643 247999999999999999999999999999999999999999999999873 899
Q ss_pred EeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEE
Q 000905 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1231)
Q Consensus 663 v~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~Ill 742 (1231)
++|++++++.|++||| ..+||||||||++||||++++|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 56899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEec
Q 000905 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 743 LDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G 800 (1231)
|||||++||+++.+.+. +.+....+++|+|++||+++.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLL-SLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999998876 4566555789999999999999999999999999998765
No 138
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.6e-37 Score=338.30 Aligned_cols=194 Identities=22% Similarity=0.374 Sum_probs=164.1
Q ss_pred EEEEeeeEeeCCCCC-CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEE
Q 000905 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~-~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~ia 661 (1231)
++++|++++|+.... .++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 678999999964211 2699999999999999999999999999999999999999999999987 399
Q ss_pred EEeCCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 662 YVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 662 yv~Q~~~lf~~-TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
|++|++.+|.. |++||+.+... .+ +++..++++..++.+.+ .....+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHHH
Confidence 99999999885 99999976422 12 34556667776665433 34667899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
++.+|+++||||||++||+.+.+.+. +.+.... +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALR-EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999998875 4565543 5899999999999865 59999999999998765
No 139
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.2e-37 Score=337.71 Aligned_cols=191 Identities=29% Similarity=0.426 Sum_probs=163.2
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
|+++|++++|+. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999963 4799999999999999999999999999999999999999999999987 39999
Q ss_pred eCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 664 ~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
+|++.++. .|++||+.++.. .+ ++++.++++..++.+..+ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99999985 699999987532 22 234556667776655443 334689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEec
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~G 800 (1231)
++|+++||||||++||+++.+.+. +.++... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999876 4565543 38999999999998764 9999999999999876
No 140
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-37 Score=346.56 Aligned_cols=205 Identities=26% Similarity=0.393 Sum_probs=173.7
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g--------- 658 (1231)
..++++|+++.|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36899999999953 4699999999999999999999999999999999999985 799998876
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.+|+.|++|||.|+.. .+. ++.+++++.+++.+++. ........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 2899999999999999999987532 222 24556677666643321 223456778999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++.+|+++||||||++||+.+.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIE-DLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999875 56666556899999999999875 599999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8653
No 141
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-37 Score=343.84 Aligned_cols=202 Identities=28% Similarity=0.395 Sum_probs=169.2
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
++++|++++|++. +++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999642 4699999999999999999999999999999999999999999999987 389
Q ss_pred EEeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 662 yv~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
|+||++.++. .|++||+.++.. .+ +++..++++..++.+ +......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999986 699999987532 22 234555556555543 012345668899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhc
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
++++|+++||||||++||+.+.+.+. +.+.... .++|+|++||+++.+ ..||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQ-EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999988765 4565543 389999999999975 56999999999999999999988653
No 142
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.7e-37 Score=312.23 Aligned_cols=193 Identities=24% Similarity=0.398 Sum_probs=172.8
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
|+|+||+..|+.+ +++|+||||+|++||.+-++||||||||||+++|.|+..|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999754 6799999999999999999999999999999999999999999999988
Q ss_pred eEEEEeCCCcCC-CCCHHHHHhcCCC-----C--CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 659 SIAYVSQTSWIQ-SGSIRDNILYGKP-----M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 ~iayv~Q~~~lf-~~TIreNI~fg~~-----~--~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
+||+|.||.-|. +-|+.||+.|.-. - -++++.++++.++|.+-...||. .||||++||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 599999998865 5699999998543 2 25678889999999999999984 699999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhhccC-eEEEEeCCeEeEecC
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVD-RILVLEGGQITQSGN 801 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~l~~aD-~Iivl~~G~I~~~Gt 801 (1231)
|||+..+|+++|=||||-+||+.++..|++ .+.+ ...|.||++.||+.+.+..++ +++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999985 4544 357999999999999998764 899999999987543
No 143
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=347.99 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=173.0
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g--------- 658 (1231)
..++++|++++|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+.+ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 45899999999963 469999999999999999999999999999999999864 6899998875
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCCC--------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM--------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~~--------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.++|++|++.+|++|++||+.++... .+++..++++.+++.+++. ...+....+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHH
Confidence 38999999999999999999875321 1234555666666543221 23456678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChH
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||++||||++++|+++||||||++||+.+.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE-ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHH-HHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999875 56766656799999999999765 69999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
++..+
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 98754
No 144
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.7e-37 Score=336.88 Aligned_cols=188 Identities=37% Similarity=0.591 Sum_probs=161.1
Q ss_pred EEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe--------EEEEeCCCc
Q 000905 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSW 668 (1231)
Q Consensus 597 ~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~--------iayv~Q~~~ 668 (1231)
++|++++|+. +++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|. ++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6889999953 46999999999999999999999999999999999999999999999983 999999987
Q ss_pred C---CCCCHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 669 I---QSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 669 l---f~~TIreNI~fg~~~-----------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
+ ++.|++|||.++... ++++++++++..++.++++. ...+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHH
Confidence 6 568999999876421 23567788888888765543 3457999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEec
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~G 800 (1231)
.++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIY-ELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999876 4565543 68999999999998754 8999999986 55554
No 145
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-37 Score=348.01 Aligned_cols=206 Identities=24% Similarity=0.397 Sum_probs=176.5
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC--------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g-------- 658 (1231)
...++++|++++|+. +++|+|+||+|++||.++|+|++|||||||+++|.|++++ ++|+|.++|
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999953 4699999999999999999999999999999999999884 899998876
Q ss_pred -------eEEEEeCCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 -------~iayv~Q~~~lf~~TIreNI~fg~~---~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
.++|++|++.+|+.|++|||.++.. . . +++.+++++.+++.+++. +..+.++.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 4899999999999999999987532 1 1 244666777777765443 2446778899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecCh
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~ 802 (1231)
||||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|+|++.|++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 251 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE-ELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999988765 56766656899999999999865 5999999999999999999
Q ss_pred HHHHhc
Q 000905 803 QELLLA 808 (1231)
Q Consensus 803 ~eL~~~ 808 (1231)
+++.+.
T Consensus 252 ~~~~~~ 257 (272)
T PRK14236 252 DTLFTS 257 (272)
T ss_pred HHHhcC
Confidence 998653
No 146
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-37 Score=336.18 Aligned_cols=190 Identities=26% Similarity=0.399 Sum_probs=164.4
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
|+++|+++.|+. +++++|+||++++| .++|+||+|||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999953 47999999999999 9999999999999999999999999999999987 3899
Q ss_pred EeCCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~lf~~-TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
++|++.+|.. |++|||.+... .+ +++.+++++.+++.+..+ ....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999999875 99999986421 11 345677788888865443 23457999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
.++|+++||||||++||+.+.+.+. +.++...+++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFR-NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999876 56666656799999999999885 59999999999998865
No 147
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=351.24 Aligned_cols=205 Identities=22% Similarity=0.368 Sum_probs=169.1
Q ss_pred CcEEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------
Q 000905 593 RSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------ 658 (1231)
+.|+++|++++|+... ..++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999996432 13699999999999999999999999999999999999999999998865
Q ss_pred ------eEEEEeCCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 ------SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 ------~iayv~Q~~--~lf~~TIreNI~fg~~---~~~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
.|+|++|+| .+++.|++|||.|+.. .+.+ +..+.++..+| |+++ ......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCHH
Confidence 389999998 4678899999998642 2222 23334444444 2221 23556789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEec
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~G 800 (1231)
||||++||||++++|+++||||||++||+++.+.+. +.+.... .++|+|+|||+++.+ +.||+|++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999998875 4565543 389999999999986 469999999999999999
Q ss_pred ChHHHHhc
Q 000905 801 NYQELLLA 808 (1231)
Q Consensus 801 t~~eL~~~ 808 (1231)
+++++.+.
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99988654
No 148
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=343.39 Aligned_cols=204 Identities=29% Similarity=0.435 Sum_probs=173.9
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g---------- 658 (1231)
.++++|+++.|++ +++++|+||+|++||+++|+|++|||||||+++|.|++++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999998763 699999876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~---~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.+++.|++|||.++.. . + +++..++++.+++.+++. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 3899999999999999999998632 1 1 344556666777654443 234456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIE-ELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999875 56766666899999999999765 599999999999999999998
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8643
No 149
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.5e-37 Score=341.89 Aligned_cols=198 Identities=22% Similarity=0.367 Sum_probs=170.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------eE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~i 660 (1231)
|+++|+++.|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| .+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 4699999999999999999999999999999999999999999999987 29
Q ss_pred EEEeCCCcCCCC-CHHHHHhcCCCC---------------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 661 AYVSQTSWIQSG-SIRDNILYGKPM---------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 661 ayv~Q~~~lf~~-TIreNI~fg~~~---------------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
+|++|++.++++ |++||+.++... ++++.+++++..++.+ .......+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 999999999986 999999885321 1234444555544432 3345567899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChH
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||++||||++++|+++||||||++||+++.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA-ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHH
Confidence 99999999999999999999999999999999875 56766666899999999999986 49999999999999999999
Q ss_pred HHHh
Q 000905 804 ELLL 807 (1231)
Q Consensus 804 eL~~ 807 (1231)
++..
T Consensus 228 ~~~~ 231 (242)
T TIGR03411 228 QVQA 231 (242)
T ss_pred HHhc
Confidence 9864
No 150
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-37 Score=341.85 Aligned_cols=196 Identities=28% Similarity=0.346 Sum_probs=170.3
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------eEEEEe
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------~iayv~ 664 (1231)
..|+++|++++|+. +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 45999999999963 4799999999999999999999999999999999999999999999987 499999
Q ss_pred CCCcCCC-CCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEE
Q 000905 665 QTSWIQS-GSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1231)
Q Consensus 665 Q~~~lf~-~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~Ill 742 (1231)
|++.+++ .|++||+.++.. ..+++..++++..++.+..+ .+..+||||||||++||||++++|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999887 699999998642 23456777888887765433 4457899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChH
Q 000905 743 FDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 743 LDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||||++||+.+.+.+. +.+.... .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999876 4565543 4799999999999864 59999999999999988754
No 151
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.9e-37 Score=340.27 Aligned_cols=198 Identities=24% Similarity=0.421 Sum_probs=167.0
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------eE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~i 660 (1231)
++++|+++.|+. +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 28
Q ss_pred EEEeCCCcCCCC-CHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHH
Q 000905 661 AYVSQTSWIQSG-SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1231)
Q Consensus 661 ayv~Q~~~lf~~-TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLAR 732 (1231)
+|++|++.++.+ |++||+.++.+ .+. ++.++.++..++. ........+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHHH
Confidence 999999999886 99999987532 122 2334444444443 3334566789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHh
Q 000905 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 733 Aly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|+..+|+++||||||++||+.+.+.+. +.++... +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999998876 4565543 589999999999765 5599999999999999999998764
No 152
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=346.13 Aligned_cols=202 Identities=23% Similarity=0.354 Sum_probs=172.9
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++++|++. .+++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999642 24699999999999999999999999999999999999999999999988 38
Q ss_pred EEEeCCCc--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 661 ayv~Q~~~--lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|++|+|+ +++.|+++|+.++.. .+ +++.+++++..++.++.+ .+..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999995 556799999988642 22 234556666666654332 34568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||++.+|+++||||||++||+++.+.+. +.++... .++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999876 4666553 37999999999998888999999999999999999998764
No 153
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=349.00 Aligned_cols=203 Identities=21% Similarity=0.355 Sum_probs=169.9
Q ss_pred EEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
++++|++++|+... .+++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996422 14699999999999999999999999999999999999999999999877
Q ss_pred ---eEEEEeCCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ---~iayv~Q~~--~lf~~TIreNI~fg~~---~~~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.|+|++|++ .+++.|++|||.++.. .+.+ +.+++++..++.++. ...+..+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 289999998 6888999999987532 2332 334455555554221 23456789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
|++||||++++|+++||||||++||+++.+.+. +.++... +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELM-TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999998875 4565543 4899999999999875 599999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 8654
No 154
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.3e-37 Score=337.29 Aligned_cols=191 Identities=28% Similarity=0.441 Sum_probs=161.6
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
++++|++++|++.. .+++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996421 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeCCCcCCC-CCHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 659 --SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 659 --~iayv~Q~~~lf~-~TIreNI~fg~---~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
.++|++|++.+++ .|++||+.++. ..+ +++..++++..++.+.+. .....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 3899999999885 69999998742 122 234556666666654333 34468999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeEe
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~ 797 (1231)
+||||++++|+++||||||++||+++.+.+. +.+.... .++|+|++||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999876 4665543 379999999999998889999999999985
No 155
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-37 Score=348.62 Aligned_cols=204 Identities=24% Similarity=0.425 Sum_probs=171.8
Q ss_pred cEEEEeeeEeeCCCC--CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~--~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
.|+++|++++|++.. .+++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 24699999999999999999999999999999999999999999999887
Q ss_pred ----eEEEEeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ----~iayv~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.|+|++|+| .+++.|++|||.|+.. .+ +++.+++++.++|..+. ......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 279999998 5788999999987532 22 23456667777765322 1244668999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
||++||||+..+|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+ ..||+|++|++|++++.|+++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~-~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMM-QLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999988765 5666543 589999999999986 469999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98653
No 156
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.1e-37 Score=340.35 Aligned_cols=199 Identities=25% Similarity=0.423 Sum_probs=169.2
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------e
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------~ 659 (1231)
++++|+++.|++ +++|+|+||++++||+++|+|++|||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 679999999953 4699999999999999999999999999999999999999999999887 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
++|++|++.++. .|++||+.++.. .+ ++++.++++..++.+.+ ..+...||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 899999998885 699999987631 22 23445555655554333 34457899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|||++++|++++|||||++||+++.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999876 4565543 5899999999999985 4999999999999999999998654
No 157
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=344.73 Aligned_cols=203 Identities=26% Similarity=0.396 Sum_probs=172.0
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC-----------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG----------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g----------- 658 (1231)
-+++|+++.|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999953 479999999999999999999999999999999999986 4799999876
Q ss_pred ----eEEEEeCCCcCCCCCHHHHHhcCCC-----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 ----SIAYVSQTSWIQSGSIRDNILYGKP-----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ----~iayv~Q~~~lf~~TIreNI~fg~~-----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.+|++|++|||.++.. .+ ++++.++++..++.+++. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 3899999999999999999987621 11 234456666666654322 234556789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIE-NLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999988865 56766667899999999999876 599999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8754
No 158
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.5e-37 Score=344.13 Aligned_cols=203 Identities=26% Similarity=0.421 Sum_probs=172.9
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
++.++++|+++.|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356999999999963 4699999999999999999999999999999999999999999998876
Q ss_pred -------------eEEEEeCCCcCCC-CCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCC
Q 000905 659 -------------SIAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1231)
Q Consensus 659 -------------~iayv~Q~~~lf~-~TIreNI~fg~----~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~ 716 (1231)
.++|+||++.++. .|++||+.++. ..+ +++..++++..++.+.+. ...
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCC
Confidence 2899999999997 59999998642 122 234555666666544321 345
Q ss_pred CCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCC
Q 000905 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G 794 (1231)
...||||||||++||||++++|+++||||||++||+.+.+.+. +.+.... +++|+|+|||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 6789999999999999999999999999999999999999876 4565543 48999999999999875 9999999999
Q ss_pred eEeEecChHHHHhc
Q 000905 795 QITQSGNYQELLLA 808 (1231)
Q Consensus 795 ~I~~~Gt~~eL~~~ 808 (1231)
++++.|+++++.+.
T Consensus 229 ~i~~~~~~~~~~~~ 242 (257)
T PRK10619 229 KIEEEGAPEQLFGN 242 (257)
T ss_pred EEEEeCCHHHhhhC
Confidence 99999999998654
No 159
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-37 Score=343.04 Aligned_cols=204 Identities=27% Similarity=0.383 Sum_probs=175.4
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g---------- 658 (1231)
-++++|+++.|+. +++|+|+||+|++||.++|+|++|||||||+++|.|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4789999999963 4699999999999999999999999999999999999875 799999876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~~----~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|+||++.+++.|++||+.|+... + +++++++++.+++.+++.. ....+...||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 28999999999999999999976321 2 2455677888877554432 23456778999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++|||||||+||+.+.+.+. +.++...+++|+|+|||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIE-DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999875 567666667999999999998754 99999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
No 160
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-37 Score=346.21 Aligned_cols=201 Identities=26% Similarity=0.430 Sum_probs=174.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++++|+.+ +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 661 ayv~Q~~--~lf~~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+||+|+| .+++.|++|||.++.. .++ ++++++++.+++.+.+... ...||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHH
Confidence 9999997 4788999999987532 333 3567788888887665544 358999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||++.+|+++||||||++||+.+.+.+. +.++... .++|+|++||+++.+ +.||+|++|++|++++.|+++|+.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELI-DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999998865 4565543 389999999999987 56999999999999999999999764
No 161
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-37 Score=342.31 Aligned_cols=204 Identities=28% Similarity=0.408 Sum_probs=173.2
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC-----CcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~-----~G~I~v~g---------- 658 (1231)
.++++|++++|+. +++|+|+||+|++|++++|+|++|||||||+++|.|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5889999999963 46999999999999999999999999999999999999987 69998765
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~~----~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.+++.|++|||.++..+ . +++++++++..++.+.++ +.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 39999999999999999999986421 1 233444555555543332 335577889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+.+...+. +.+....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIE-ELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999865 566665568999999999998765 79999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8654
No 162
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.9e-37 Score=359.58 Aligned_cols=200 Identities=26% Similarity=0.446 Sum_probs=175.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
.++++|++++|+. +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4789999999963 5799999999999999999999999999999999999999999999988 39
Q ss_pred EEEeCCCcC-CCCCHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 661 AYVSQTSWI-QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 661 ayv~Q~~~l-f~~TIreNI~fg~~-----------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
+||+|++.+ ++.|++||+.+|+. .++++++++++..++.+..+. ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 68899999988741 134567888888888655432 3568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHH
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
+||||++++|+++||||||++||+.+...+. +.++.+. +++|+|++||+++.+ +.||+|++|++|++++.|+++|++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~-~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999998876 4565543 589999999999997 569999999999999999999988
Q ss_pred hc
Q 000905 807 LA 808 (1231)
Q Consensus 807 ~~ 808 (1231)
..
T Consensus 228 ~~ 229 (402)
T PRK09536 228 TA 229 (402)
T ss_pred Cc
Confidence 64
No 163
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-37 Score=345.40 Aligned_cols=205 Identities=25% Similarity=0.382 Sum_probs=173.0
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g--------- 658 (1231)
..++++|+++.|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 35999999999963 469999999999999999999999999999999999987 6999999876
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~---~-~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.++|++|++.+|..|++|||.++.. . ++ ++..++++..++.+++. ......+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 3899999999999999999987532 2 21 22344444444433332 33456788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChH
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE-ELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999875 56766666899999999999875 59999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 98654
No 164
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.5e-37 Score=350.65 Aligned_cols=201 Identities=25% Similarity=0.433 Sum_probs=170.9
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eE
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~i 660 (1231)
..++++|++++|++ ..+|+|+||+|++||.++++||+|||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999963 4799999999999999999999999999999999999999999999987 49
Q ss_pred EEEeCCCcCCC-CCHHHHHhc-CCC--CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHH
Q 000905 661 AYVSQTSWIQS-GSIRDNILY-GKP--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1231)
Q Consensus 661 ayv~Q~~~lf~-~TIreNI~f-g~~--~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLAR 732 (1231)
|||||++.++. .|++||+.| +.- .+. ++.+++++.++|.+ ..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 699999985 321 122 34455566665543 333443 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhc
Q 000905 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 733 Aly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|+.++|++++|||||++||+.+.+.+. +.++... +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999876 4566543 58999999999998854 999999999999999999999754
No 165
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-37 Score=333.70 Aligned_cols=189 Identities=30% Similarity=0.466 Sum_probs=164.0
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
|+++|++++|++ +. .|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999953 22 399999999999999999999999999999999999999999988 38999
Q ss_pred eCCCcCCCC-CHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 664 SQTSWIQSG-SIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 664 ~Q~~~lf~~-TIreNI~fg~~-------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
+|++.++.+ |++||+.++.. .++++.+++++.+++.+.....| .+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999999975 99999987642 12456788888888877666544 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEec
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~G 800 (1231)
++|+++||||||++||+++.+.+. +.++... +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEML-DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999875 4565543 38999999999998865 9999999999998765
No 166
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-37 Score=344.33 Aligned_cols=205 Identities=23% Similarity=0.366 Sum_probs=174.4
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g--------- 658 (1231)
..++++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999987 6899999876
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCCC---C---HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~~---~---~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.++|++|++.+|..|++||+.++... + +++..++++.+++...+ .+.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 38999999999989999999986532 1 34556666766664332 22345667889999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchh-hccCeEEEEeC-----------C
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEG-----------G 794 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l-~~aD~Iivl~~-----------G 794 (1231)
|++||||++++|+++||||||++||+.+.+++. +.++...+++|+|++||+++.+ ..||+|++|++ |
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIE-ETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 999999999999999999999999999999875 4666665689999999999876 56999999996 6
Q ss_pred eEeEecChHHHHhc
Q 000905 795 QITQSGNYQELLLA 808 (1231)
Q Consensus 795 ~I~~~Gt~~eL~~~ 808 (1231)
++++.|+.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 79999999998754
No 167
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.5e-37 Score=335.46 Aligned_cols=188 Identities=26% Similarity=0.424 Sum_probs=161.1
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
++++|+++.|+.+ +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999632 4699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 ~iayv~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
.++|++|++.++. .|++||+.++.. .+ ++++.++++.+++.+..+.. ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 2899999999887 599999987532 12 34567778887776554433 35899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-cCeEEEEeCCeE
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I 796 (1231)
|||++++|+++||||||++||+++.+.+. +.++.. .+++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIM-NLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999876 456554 358999999999998875 899999999975
No 168
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-37 Score=343.62 Aligned_cols=204 Identities=27% Similarity=0.389 Sum_probs=172.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g---------- 658 (1231)
.++++|++++|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4789999999963 4699999999999999999999999999999999999987 499998876
Q ss_pred -----eEEEEeCCCcCCCC-CHHHHHhcCCC---C--CH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 -----SIAYVSQTSWIQSG-SIRDNILYGKP---M--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~-TIreNI~fg~~---~--~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
.++|++|++.+|.. |++||+.++.. . +. ++.+++++..++.+++. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 38999999999975 99999987531 1 12 34555666666644332 1234567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecCh
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~ 802 (1231)
||||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE-ELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999876 46666556799999999999865 5999999999999999999
Q ss_pred HHHHhc
Q 000905 803 QELLLA 808 (1231)
Q Consensus 803 ~eL~~~ 808 (1231)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 998754
No 169
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-37 Score=339.26 Aligned_cols=198 Identities=27% Similarity=0.405 Sum_probs=167.4
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
++++|++++|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 4699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCCcCCCC-CHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ---SIAYVSQTSWIQSG-SIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ---~iayv~Q~~~lf~~-TIreNI~fg~----~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.|+|+||++.++.+ |++|||.++. ..+ .++..+.++..++.+.+. ....+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHH
Confidence 38999999999874 9999997421 111 234455555555544433 344689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
|++||||++++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIV-SIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999998876 4666543 4899999999999986 499999999999999999988
Q ss_pred HHh
Q 000905 805 LLL 807 (1231)
Q Consensus 805 L~~ 807 (1231)
+.+
T Consensus 228 ~~~ 230 (242)
T PRK11124 228 FTQ 230 (242)
T ss_pred hcC
Confidence 754
No 170
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-37 Score=333.23 Aligned_cols=191 Identities=27% Similarity=0.449 Sum_probs=162.4
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------eEEEEeC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------~iayv~Q 665 (1231)
++++|+++.|++ +++++|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999953 4699999999999999999999999999999999999999999999987 4999999
Q ss_pred CCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 666 TSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 666 ~~~lf~~-TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
++.++.+ |++||+.++.. .+ +++..+.++..++.+.. .....+||||||||++||||++++
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9998874 99999987432 11 34455666666665433 345678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
|+++||||||++||+.+.+.+.+ .++.. .+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKD-VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999998764 56544 35799999999999875 59999999999998765
No 171
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.2e-37 Score=356.66 Aligned_cols=187 Identities=33% Similarity=0.468 Sum_probs=163.2
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------------eEEEEeCCCc
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------------SIAYVSQTSW 668 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------------~iayv~Q~~~ 668 (1231)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999986 3999999999
Q ss_pred CCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 669 IQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 669 lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
+|+ .|++|||.++.. .+ +++..++++..+|.+..+.. ..+||||||||++||||++++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999998742 22 34567778888876554433 357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhc
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
+|||||||+||+.+.+.+.+ .+.... .++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~-~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQD-ELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999998764 454443 389999999999985 66999999999999999999999865
No 172
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-37 Score=341.60 Aligned_cols=204 Identities=28% Similarity=0.377 Sum_probs=172.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g---------- 658 (1231)
.++++|++++|++ +++|+|+||+|++||.++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4789999999963 4699999999999999999999999999999999999974 699999887
Q ss_pred ---eEEEEeCCCcCC-CCCHHHHHhcCCCC-----C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 ---SIAYVSQTSWIQ-SGSIRDNILYGKPM-----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ---~iayv~Q~~~lf-~~TIreNI~fg~~~-----~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.|+|++|++.++ +.|++||+.++... + +++.+++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 389999999754 67999999876321 1 245566777777754322 122345678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||+.++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIE-SLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999999876 45666556899999999999875 699999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8754
No 173
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.9e-37 Score=338.29 Aligned_cols=197 Identities=29% Similarity=0.482 Sum_probs=166.6
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------eE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~i 660 (1231)
++++|+++.|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 4799999999999999999999999999999999999999999999886 38
Q ss_pred EEEeCCCcCCCC-CHHHHHhcCCC-C--C-HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 661 AYVSQTSWIQSG-SIRDNILYGKP-M--D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 661 ayv~Q~~~lf~~-TIreNI~fg~~-~--~-~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
+|++|++.+|.. |++||+.++.. . + ++...++++..+. ..........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 99999987642 2 1 2233444444431 112234566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHH
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
++|+++||||||++||+.+.+.+. +.+.... .++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999875 4565544 37999999999998875 999999999999999999987
No 174
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-37 Score=359.14 Aligned_cols=186 Identities=26% Similarity=0.426 Sum_probs=162.9
Q ss_pred CceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------------eEEEEeCCCcCCC-C
Q 000905 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS-G 672 (1231)
Q Consensus 611 ~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------------~iayv~Q~~~lf~-~ 672 (1231)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 489999999999999999999999999999999999999999999876 3899999999986 5
Q ss_pred CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000905 673 SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1231)
Q Consensus 673 TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDe 745 (1231)
|++|||.++.. ++ +++..++++.++|.+..+..| .+||||||||++||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 22 346677888888876555444 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhc
Q 000905 746 PFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 746 p~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|||+||+.+.+.+. +.+.... .++|+|+|||+++.+ +.||+|++|++|+|++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~-~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQ-DELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHH-HHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999875 4555542 489999999999986 46999999999999999999999865
No 175
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1e-36 Score=343.34 Aligned_cols=205 Identities=25% Similarity=0.380 Sum_probs=170.3
Q ss_pred EEEEeeeEeeCCC------CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------
Q 000905 595 VKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~------~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------- 658 (1231)
++++|++++|+.. .++++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 135799999999999999999999999999999999999999999999887
Q ss_pred ------eEEEEeCCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCC
Q 000905 659 ------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1231)
Q Consensus 659 ------~iayv~Q~~~--lf-~~TIreNI~fg~----~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LS 721 (1231)
.|+|++|+|. ++ +.|++|||.++. .++ +++..++++..++.+. ....++.+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhCC
Confidence 3999999983 43 479999996532 122 2345566666655321 1235667899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeE
Q 000905 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQ 798 (1231)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~ 798 (1231)
||||||++||||++++|+++||||||++||+.+.+.+. +.++... .++|+|+|||+++.+. .||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL-ELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999988765 4666554 3899999999999886 599999999999999
Q ss_pred ecChHHHHhcCc
Q 000905 799 SGNYQELLLAGT 810 (1231)
Q Consensus 799 ~Gt~~eL~~~~~ 810 (1231)
.|+++++.....
T Consensus 232 ~g~~~~~~~~~~ 243 (265)
T TIGR02769 232 ECDVAQLLSFKH 243 (265)
T ss_pred ECCHHHHcCCCC
Confidence 999999986433
No 176
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=335.34 Aligned_cols=197 Identities=28% Similarity=0.489 Sum_probs=171.9
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
++++|++++|+. .+ .|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 689999999963 22 399999999999999999999999999999999999999999987 38999
Q ss_pred eCCCcCCCC-CHHHHHhcCC-C------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 664 SQTSWIQSG-SIRDNILYGK-P------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 664 ~Q~~~lf~~-TIreNI~fg~-~------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
+|++.++.+ |++|||.++. + .++++..++++..++.+.++..| ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999999875 9999998753 1 12456788888888887766655 379999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhc
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
++|+++||||||++||+.+.+.+. +.+.... .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEML-TLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999876 4565543 37899999999998765 899999999999999999998764
No 177
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=7.5e-37 Score=342.08 Aligned_cols=199 Identities=26% Similarity=0.416 Sum_probs=169.9
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
|+++|+++.|+. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 4799999999999999999999999999999999999999999998876
Q ss_pred ----------eEEEEeCCCcCCC-CCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCc
Q 000905 659 ----------SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1231)
Q Consensus 659 ----------~iayv~Q~~~lf~-~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~ 719 (1231)
.++|++|++.++. .|++||+.++.. .+ ++++.++++..++.+.++ .....
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 3899999999885 799999987521 22 244566666666654443 44578
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeE
Q 000905 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQI 796 (1231)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I 796 (1231)
||||||||++||||+.++|+++||||||++||+.+.+.+. +.+.... .++|+|++||+++.+. .||++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL-NVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999998876 4565543 3899999999999874 5999999999999
Q ss_pred eEecChHHHHhc
Q 000905 797 TQSGNYQELLLA 808 (1231)
Q Consensus 797 ~~~Gt~~eL~~~ 808 (1231)
++.|+++++.+.
T Consensus 226 ~~~g~~~~~~~~ 237 (252)
T TIGR03005 226 VEQGKPDEIFRQ 237 (252)
T ss_pred EEeCCHHHHhcC
Confidence 999999998754
No 178
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-37 Score=341.16 Aligned_cols=203 Identities=26% Similarity=0.397 Sum_probs=173.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g---------- 658 (1231)
.++++|+++.|+. +++|+|+||+|++||.++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999963 4799999999999999999999999999999999999986 599999876
Q ss_pred ----eEEEEeCCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ----~iayv~Q~~~lf~~TIreNI~fg~~---~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.++|++|++.+|+.|++|||.++.. . + ++++.++++..++.+++. +.......+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 2899999999999999999987632 1 1 234455666666655442 2345667899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
|++||||++.+|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+.. ||+|++|++|+|++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIE-ELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999988765 567666667999999999998765 999999999999999998887
Q ss_pred Hh
Q 000905 806 LL 807 (1231)
Q Consensus 806 ~~ 807 (1231)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
No 179
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8.9e-37 Score=352.04 Aligned_cols=206 Identities=24% Similarity=0.384 Sum_probs=172.3
Q ss_pred CcEEEEeeeEeeCCCC----------CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----
Q 000905 593 RSVKIQEGNFSWDPEL----------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~----------~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---- 658 (1231)
.-++++|++++|+.+. ..++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4589999999996321 24689999999999999999999999999999999999999999999877
Q ss_pred ------------eEEEEeCCC--cCC-CCCHHHHHhcCC-----CCCH----HHHHHHHHHhcchHHHhcCCCCCccccc
Q 000905 659 ------------SIAYVSQTS--WIQ-SGSIRDNILYGK-----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIG 714 (1231)
Q Consensus 659 ------------~iayv~Q~~--~lf-~~TIreNI~fg~-----~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IG 714 (1231)
+|+||+|+| .++ ..||.|||.++. ..++ ++..++++..++.++. ..
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------IN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------hc
Confidence 499999998 365 579999997531 2332 3455667777764322 22
Q ss_pred CCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEE
Q 000905 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVL 791 (1231)
Q Consensus 715 e~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl 791 (1231)
.....|||||||||+||||++.+|+++|+|||||+||+.+.+.+.+ .++.+. .+.|+|+|||+++.+.. ||+|++|
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3456899999999999999999999999999999999999998864 565543 38999999999999865 9999999
Q ss_pred eCCeEeEecChHHHHhcC
Q 000905 792 EGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 792 ~~G~I~~~Gt~~eL~~~~ 809 (1231)
++|+|++.|+.+++.++.
T Consensus 236 ~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNP 253 (331)
T ss_pred ECCEEEEEcCHHHHHcCC
Confidence 999999999999998653
No 180
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7.2e-37 Score=336.19 Aligned_cols=197 Identities=24% Similarity=0.363 Sum_probs=168.0
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------e
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ 659 (1231)
..|+++|+++.|+. +++++|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 35899999999953 4799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeCCCcCCCCCHHHHHhcCCC-----CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 660 IAYVSQTSWIQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 660 iayv~Q~~~lf~~TIreNI~fg~~-----~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
++|++|++.+++.|++||+.++.. .++++..+.++..++.+ +.......+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999999999999999987421 23344556666666532 223456779999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEE-eCCeEeEecChH
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVL-EGGQITQSGNYQ 803 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl-~~G~I~~~Gt~~ 803 (1231)
+++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.++.||+|++| +++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVN-EIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999988765 5566543 388999999999999999999999 477788889886
No 181
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=342.99 Aligned_cols=200 Identities=25% Similarity=0.353 Sum_probs=173.0
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------e
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ 659 (1231)
..++++|++++|+. +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 45899999999953 4799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~-----------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
++|++|++-++. .|++||+.++.. .++++.+++++.+++.+.++..| .+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHH
Confidence 899999976655 599999987531 12356778888888876555443 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
++||||+..+|+++||||||++||+.+.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.|+.+|
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999865 4565543 3799999999999875 699999999999999999998
Q ss_pred HHh
Q 000905 805 LLL 807 (1231)
Q Consensus 805 L~~ 807 (1231)
+.+
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 865
No 182
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=342.54 Aligned_cols=204 Identities=27% Similarity=0.398 Sum_probs=175.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g---------- 658 (1231)
.++++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999953 479999999999999999999999999999999999976 4799999876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCCC------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~~------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
+++|++|++.+++.|++|||.++... .+++..++++.+++.+++.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 38999999999999999999886431 13456667777887665532 2356678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchh-hccCeEEEEe---------CCeEe
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLE---------GGQIT 797 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l-~~aD~Iivl~---------~G~I~ 797 (1231)
++||||++++|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+ ..||+|++|+ +|+|+
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIE-ELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999865 5676666679999999999986 4589999998 89999
Q ss_pred EecChHHHHhc
Q 000905 798 QSGNYQELLLA 808 (1231)
Q Consensus 798 ~~Gt~~eL~~~ 808 (1231)
+.|+.+|+.+.
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999999754
No 183
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=341.29 Aligned_cols=204 Identities=25% Similarity=0.347 Sum_probs=173.4
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g---------- 658 (1231)
.|+++|++++|++ +++|+|+||++++||+++|+|++|||||||+++|.|+.++ ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999953 4799999999999999999999999999999999998753 489998876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~~----~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.+|+.|++|||.++... + +++..++++..++.+++ .+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 38999999999999999999986431 1 22345555555554433 2345677889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIE-DLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9999999999999999999999999999999875 56766656799999999999886 599999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 235 ~~~~ 238 (253)
T PRK14261 235 IFEN 238 (253)
T ss_pred HHhC
Confidence 8653
No 184
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=341.22 Aligned_cols=199 Identities=22% Similarity=0.373 Sum_probs=168.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|+++.|+. +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999953 4799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEeCCCcCCCC-CHHHHHhcCCC----------------CC------HHHHHHHHHHhcchHHHhcCCCCCcccccCC
Q 000905 660 IAYVSQTSWIQSG-SIRDNILYGKP----------------MD------KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1231)
Q Consensus 660 iayv~Q~~~lf~~-TIreNI~fg~~----------------~~------~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~ 716 (1231)
++|++|++.++.. |++|||.++.. .+ .+++.+.++..++ +.....+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-----------LEHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-----------hhhhhCC
Confidence 8899999999985 99999998631 00 0123333333333 3344566
Q ss_pred CCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEccCcchhhc-cCeEEEEeC
Q 000905 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLSE-VDRILVLEG 793 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~~-aD~Iivl~~ 793 (1231)
..+||||||||++||||++.+|+++||||||++||+.+.+.+. +.+.... + ++|+|++||+++.+.. ||+|++|++
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD-ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-HHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 7899999999999999999999999999999999999999875 4565543 3 7899999999998755 999999999
Q ss_pred CeEeEecChHHHHh
Q 000905 794 GQITQSGNYQELLL 807 (1231)
Q Consensus 794 G~I~~~Gt~~eL~~ 807 (1231)
|++++.|+.+++..
T Consensus 230 g~i~~~~~~~~~~~ 243 (255)
T PRK11300 230 GTPLANGTPEEIRN 243 (255)
T ss_pred CeEEecCCHHHHhh
Confidence 99999999998864
No 185
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=344.79 Aligned_cols=200 Identities=26% Similarity=0.463 Sum_probs=171.4
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------e
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------~ 659 (1231)
++++|++++|+. .+++++|+||+|++||.++|+|++|||||||+++|.|+++|.+|+|.++| .
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 679999999963 24699999999999999999999999999999999999999999999887 2
Q ss_pred EEEEeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 660 iayv~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
|+|++|+| .+++.|++|||.++.. .+ +++..++++.++|.+..+ ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 89999997 5788999999987632 22 245666777777753322 2345899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|||++.+|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIM-KLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999876 4565543 4899999999999876 5999999999999999999998754
No 186
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-37 Score=341.33 Aligned_cols=204 Identities=25% Similarity=0.386 Sum_probs=173.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g---------- 658 (1231)
.|+++|+++.|++ +++|+|+||++++||+++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4789999999963 4799999999999999999999999999999999999974 899999876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~---~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.++..|++||+.++.. . . +++.+++++..++.+++. +..+.+..+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 3999999999999999999987531 1 1 233455666666654442 234567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+ ..||+|++|++|++++.|+.++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIE-KLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHH-HHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999865 5676666689999999999975 5599999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 8754
No 187
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.1e-36 Score=343.73 Aligned_cols=201 Identities=23% Similarity=0.338 Sum_probs=170.4
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
..|+++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 35899999999953 4799999999999999999999999999999999999999999999886
Q ss_pred --eEEEEeCCCcCCCC-CHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 --SIAYVSQTSWIQSG-SIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 --~iayv~Q~~~lf~~-TIreNI~fg~----~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
.++|++|++.+++. |++|||.++. ..+. ++..+.++..++.+..+ ....+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 28999999999986 9999998642 1222 34455566666543322 2346899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHH
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~e 804 (1231)
++||||++++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLV-KLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999998875 4565543 37999999999988755 99999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 231 ~~~~ 234 (269)
T PRK11831 231 LQAN 234 (269)
T ss_pred HhcC
Confidence 8764
No 188
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.5e-36 Score=339.42 Aligned_cols=200 Identities=27% Similarity=0.436 Sum_probs=168.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
.++++|++++|++ +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3789999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEeCCCcCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 ------SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~-~TIreNI~fg~----~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
.++|+||++.+++ .|++||+.++. ..+. ++..++++..++.+ .......+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-----------KETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------hhhCChhhCChH
Confidence 3899999999885 69999998642 1222 23444555555432 223567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecC
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt 801 (1231)
||||++||||+..+|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL-NTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999876 4565543 48999999999998864 99999999999999999
Q ss_pred hHHHHhc
Q 000905 802 YQELLLA 808 (1231)
Q Consensus 802 ~~eL~~~ 808 (1231)
++++.+.
T Consensus 228 ~~~~~~~ 234 (250)
T PRK11264 228 AKALFAD 234 (250)
T ss_pred HHHHhcC
Confidence 9998653
No 189
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=340.56 Aligned_cols=198 Identities=27% Similarity=0.420 Sum_probs=171.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
++++|++++|++ +++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999953 4799999999999999999999999999999999999999999999987 399
Q ss_pred EEeCCCcCCCC-CHHHHHhcCCC-----C------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 662 YVSQTSWIQSG-SIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 662 yv~Q~~~lf~~-TIreNI~fg~~-----~------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
|++|++.++.+ |+.||+.++.. + ++++.+++++..++.+..+ .....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999998876 99999998631 1 2345667777777765443 345789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHh
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
||||+.++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELM-RLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999998875 4565543 5899999999999875 599999999999999999999864
No 190
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.2e-36 Score=335.31 Aligned_cols=194 Identities=28% Similarity=0.411 Sum_probs=166.5
Q ss_pred cEEEEeeeEeeCCCCC-CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~-~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
.++++|++++|+++.. .++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999964321 3699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCCcCCCC-CHHHHHhcCC---CC----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 ---SIAYVSQTSWIQSG-SIRDNILYGK---PM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 ---~iayv~Q~~~lf~~-TIreNI~fg~---~~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
.++|++|++.++.. |++|||.++. .. .++++.++++.+++.+.++..| .+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 38999999998874 9999998642 11 2456777888888876655443 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeEeEe
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~ 799 (1231)
++||||++++|+++||||||++||+.+.+.+. +.++... .++|+|++||+++.+..||+|++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIA-DLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999988875 4565543 37899999999999888999999999999864
No 191
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.4e-36 Score=348.43 Aligned_cols=200 Identities=28% Similarity=0.425 Sum_probs=168.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~ia 661 (1231)
.|+++|++++|++ +++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.++| .++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 5899999999963 4699999999999999999999999999999999999999999999987 399
Q ss_pred EEeCCCcCCC-CCHHHHHhc-CC--CCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 662 YVSQTSWIQS-GSIRDNILY-GK--PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 662 yv~Q~~~lf~-~TIreNI~f-g~--~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
|+||++.++. .|++||+.+ +. ..++ ++.+++++.+++.+. .++ +..+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~----~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADV----RVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcC----chhhCCHHHHHHHHHHHH
Confidence 9999998885 699999975 22 1232 234455555555432 232 345799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
++++|+++||||||++||+.+.+.+. +.+... .+|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999876 455544 35899999999999875 5999999999999999999998754
No 192
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=343.85 Aligned_cols=205 Identities=24% Similarity=0.348 Sum_probs=173.6
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g--------- 658 (1231)
..++++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35899999999963 4799999999999999999999999999999999999986 699999876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC----CCHHHH----HHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~----~~~~~~----~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.+|+.|++|||.++.. .+++++ .+.++.+++.+.+ .+.......+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHH
Confidence 3899999999999999999987632 233333 3445555553322 2344567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE-EFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999876 46666556789999999999865 599999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 9764
No 193
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1e-36 Score=318.57 Aligned_cols=162 Identities=26% Similarity=0.453 Sum_probs=148.0
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCCC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~~ 672 (1231)
|+++|++++|+.+ +++|+|+||++++||+++|+|++|||||||+++|+|+++|++|+|.++| +++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999632 4799999999999999999999999999999999999999999999988 79999999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 000905 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1231)
Q Consensus 673 TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~ 752 (1231)
|++|||.++ +...||||||||++||||++++|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCe
Q 000905 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1231)
Q Consensus 753 ~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~ 795 (1231)
++.+.+. +.+... ++|+|++||+.+....||+|++|++|-
T Consensus 125 ~~~~~l~-~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLY-QLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHH-HHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999876 456554 699999999999888999999998763
No 194
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=341.54 Aligned_cols=205 Identities=28% Similarity=0.414 Sum_probs=176.7
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC--------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g-------- 658 (1231)
.+.|+++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+.+| ++|+|.++|
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999963 4799999999999999999999999999999999999875 799998864
Q ss_pred ---------eEEEEeCCCcCCCCCHHHHHhcCCC--------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCC
Q 000905 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP--------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1231)
Q Consensus 659 ---------~iayv~Q~~~lf~~TIreNI~fg~~--------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LS 721 (1231)
.++|++|++.+|++|++|||.++.. ..++++.++++.+++.+++. +..+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3899999999999999999987631 12356777777777755443 34456778999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
||||||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIE-ELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999998865 46666556789999999999885 59999999999999999
Q ss_pred ChHHHHh
Q 000905 801 NYQELLL 807 (1231)
Q Consensus 801 t~~eL~~ 807 (1231)
+++++..
T Consensus 243 ~~~~~~~ 249 (265)
T PRK14252 243 ATDTIFI 249 (265)
T ss_pred CHHHHHh
Confidence 9999864
No 195
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=7.2e-37 Score=333.85 Aligned_cols=187 Identities=24% Similarity=0.446 Sum_probs=161.5
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
++++|++++|+. ++++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 679999999952 24799999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCcCCC-CCHHHHHhcCCC---C----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 659 SIAYVSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 ~iayv~Q~~~lf~-~TIreNI~fg~~---~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
.++|++|+|.+|. .|++||+.++.. . .+++++++++..++.+.+...| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 3899999999985 699999987521 1 2456778888888876555443 4799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCe
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~ 795 (1231)
|||++++|+++||||||++||+.+.+.+. +.++... +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERIL-DLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999876 4565543 58999999999998875 89999999985
No 196
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=343.04 Aligned_cols=199 Identities=26% Similarity=0.379 Sum_probs=169.6
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------e
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------~ 659 (1231)
++++|++++|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 678999999953 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCc--CCCCCHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 660 IAYVSQTSW--IQSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 660 iayv~Q~~~--lf~~TIreNI~fg~---~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
|+|++|++. ++..|+.||+.++. ..++ +++.++++..++.+..+ ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 899999985 67789999998742 1222 34556677777754332 3456899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|||++.+|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMI-AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999876 4565543 5899999999999875 5999999999999999999998654
No 197
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.5e-37 Score=332.53 Aligned_cols=187 Identities=31% Similarity=0.513 Sum_probs=158.5
Q ss_pred EEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEEE
Q 000905 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1231)
Q Consensus 596 ~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~iay 662 (1231)
+++|++++|+.. ++++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 24799999999999999999999999999999999999999999999987 3899
Q ss_pred EeCCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 663 VSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 663 v~Q~~--~lf~~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
++|++ .+++.|++||+.++.. .+ +++..+.++..++.+.++ .+..+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99998 3678999999987532 22 234566777777765444 3446899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCe
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~ 795 (1231)
++++|+++||||||++||+.+.+.+.+ .+.... +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLE-LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999998764 565543 48999999999999876 99999999985
No 198
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=344.55 Aligned_cols=206 Identities=28% Similarity=0.447 Sum_probs=174.7
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC--------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g-------- 658 (1231)
+..++++|+++.|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345899999999953 469999999999999999999999999999999999997 6899999876
Q ss_pred -------eEEEEeCCCcCCCCCHHHHHhcCCC---C---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -------~iayv~Q~~~lf~~TIreNI~fg~~---~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.+|..|++|||.++.. . .+++++++++..++.+.+.. ....+..+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHH
Confidence 3899999999999999999987532 1 24566777777777544321 23466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEE-EEeCCeEeEecChH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRIL-VLEGGQITQSGNYQ 803 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Ii-vl~~G~I~~~Gt~~ 803 (1231)
||++||||++++|+|+||||||++||+.+.+.+. +.++...+++|+|++||+++.+.. ||+++ +|++|+|++.|+++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~-~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIE-DLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 9999999999999999999999999999999875 567666566899999999998765 99975 57999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
++.+.
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 88653
No 199
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=339.37 Aligned_cols=205 Identities=25% Similarity=0.378 Sum_probs=174.1
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc--C---CCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~--~---~~G~I~v~g--------- 658 (1231)
+.|+++|++++|+. +++|+|+||+|++||.++|+|++|||||||+++|.|+++ | ++|+|.++|
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46899999999963 469999999999999999999999999999999999986 3 689999877
Q ss_pred ------eEEEEeCCCcCCC-CCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~-~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
.++|++|++.++. .|++|||.++.. .+ +++..++++.+++.+.+.. ..+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 2899999999988 699999987421 22 2456677777777654432 223457789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecCh
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~ 802 (1231)
||||++||||++.+|+++||||||++||+.+.+.+. +.++...+++|+|++||+++.+. .||++++|++|+|++.|++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIE-ELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999998875 56766667799999999999875 5999999999999999999
Q ss_pred HHHHhc
Q 000905 803 QELLLA 808 (1231)
Q Consensus 803 ~eL~~~ 808 (1231)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 998653
No 200
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.8e-36 Score=335.62 Aligned_cols=199 Identities=32% Similarity=0.454 Sum_probs=170.2
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
++++|++++|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 48999
Q ss_pred eCCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 664 SQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 664 ~Q~~~lf~~-TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
||+|.+|.+ |++||+.++.+ .+ +++..++++..++.+..+ ....+||||||||++||||+.
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 999999975 99999988643 22 334556666666654433 334689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
++|+++||||||++||+++.+.+. +.+....+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999876 45655433 799999999999865 4999999999999999999998753
No 201
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=334.17 Aligned_cols=204 Identities=23% Similarity=0.359 Sum_probs=166.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|++++|+. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999953 4799999999999999999999999999999999999999999999887 2
Q ss_pred EEEEeCCCcCCCC-CHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 660 IAYVSQTSWIQSG-SIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 660 iayv~Q~~~lf~~-TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
++|++|++.+|.+ |++|||.++... +.++.++.++ +-++.++...++ .......||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHHHhC
Confidence 8999999999985 999999886432 2222222111 111111111111 2245678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHh
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|+|+||||||++||+.+.+.+. +.++... +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999998875 4565543 589999999999865 5699999999999999999999864
No 202
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=336.17 Aligned_cols=199 Identities=30% Similarity=0.401 Sum_probs=173.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
|+++|++++|+. +++++|+||++++||+++|+|++|||||||+++|.|+++|.+|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999963 4799999999999999999999999999999999999999999999987 48999
Q ss_pred eCCCcCCCC-CHHHHHhcCCC---C----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 664 SQTSWIQSG-SIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 664 ~Q~~~lf~~-TIreNI~fg~~---~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
+|++.+|.+ |++||+.++.. . .+++++++++..++.+.+...| .+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHh
Confidence 999999965 99999987532 1 2456777888888876665544 589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
++|+++||||||++||+.+.+.+. +.+....+ ++|+|++||+++.++ .||+|++|++|++.+.|+++++.+.
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQ-LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999865 56665543 899999999999875 5899999999999999999988754
No 203
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.9e-37 Score=336.12 Aligned_cols=195 Identities=26% Similarity=0.406 Sum_probs=158.5
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
++++|++++|+... ..++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996421 12699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCc--CC-CCCHHHHHhcCCC-----CCHHHHH----HHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -SIAYVSQTSW--IQ-SGSIRDNILYGKP-----MDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -~iayv~Q~~~--lf-~~TIreNI~fg~~-----~~~~~~~----~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++. ++ +.|++|||.++.. .+++..+ +.++..++. .........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 3899999993 33 5799999976421 1122211 333333332 1234456678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
||++||||++++|+++||||||++||+++.+.+. +.++...+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQIL-DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999998865 46665543 899999999999887 69999999999998765
No 204
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=340.23 Aligned_cols=201 Identities=22% Similarity=0.323 Sum_probs=173.1
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
...|+++|++++|+. +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 5 ~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 356899999999963 4699999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCcCC-CCCHHHHHhcCC-C-------C---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 SIAYVSQTSWIQ-SGSIRDNILYGK-P-------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ~iayv~Q~~~lf-~~TIreNI~fg~-~-------~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.++|++|++.++ +.|++||+.++. + . ++++++++++..++.+... ....+|||||||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~q 150 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQ 150 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHH
Confidence 389999999887 469999998752 1 1 1345677777777765433 346789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|++||||++++|+++||||||++||+++.+++. +.+.... +++|+|++||+++.+ ..||+|++|++|++++.|+++
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL-ELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999876 4565543 378999999999976 559999999999999999999
Q ss_pred HHHh
Q 000905 804 ELLL 807 (1231)
Q Consensus 804 eL~~ 807 (1231)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 9865
No 205
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=338.61 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=175.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g---------- 658 (1231)
.++++|+++.|++ +++|+|+||+|++||.++|+|++|||||||+++|.|+.+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 479999999999999999999999999999999999864 4899998877
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|+||++++|+.|++|||.++.. .+ ++++.++++.+++.+++..+ .+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 3899999999999999999987521 12 24567778888887665422 3456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+++.+.+. +.++...+++|+|++||+++.+.. +|+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIE-DLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999988875 567666668999999999998665 88999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 8644
No 206
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=346.17 Aligned_cols=205 Identities=27% Similarity=0.441 Sum_probs=175.0
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g--------- 658 (1231)
..|+++|+++.|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 45899999999963 479999999999999999999999999999999999986 6899999876
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCCC--------------------CHHHHHHHHHHhcchHHHhcCCCCCccc
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM--------------------DKARYDKAIKACALDKDINNFDHGDLTE 712 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~~--------------------~~~~~~~vl~~~~L~~di~~lp~G~~T~ 712 (1231)
.++|++|++.+|+.|++|||.++... .++++.++++.+++.+++ ++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------NDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hHH
Confidence 38999999999999999999976321 123456666666664433 345
Q ss_pred ccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeE-EE
Q 000905 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRI-LV 790 (1231)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~I-iv 790 (1231)
......+||||||||++||||++++|+|+||||||++||+.+.+.+. +.++...+++|+|++||+++.+. .||+| ++
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~-~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE-DLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 56778899999999999999999999999999999999999999875 56766666799999999999975 49997 57
Q ss_pred EeCCeEeEecChHHHHhc
Q 000905 791 LEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 791 l~~G~I~~~Gt~~eL~~~ 808 (1231)
|++|++++.|+++++.+.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 899999999999998653
No 207
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.3e-36 Score=349.56 Aligned_cols=201 Identities=27% Similarity=0.430 Sum_probs=169.6
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eE
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~i 660 (1231)
..|+++|++++|++ +.+|+|+||+|++||.++++||+|||||||+++|+|+++|++|+|.++| .|
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 45999999999963 4699999999999999999999999999999999999999999999987 39
Q ss_pred EEEeCCCcCC-CCCHHHHHhc-CCC--CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHH
Q 000905 661 AYVSQTSWIQ-SGSIRDNILY-GKP--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1231)
Q Consensus 661 ayv~Q~~~lf-~~TIreNI~f-g~~--~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLAR 732 (1231)
+|+||++.++ +.|++||+.+ +.- .+. ++.+++++.++|. +..++. ..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-------~~~~~~----~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-------SKADAR----VSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hhhCCC----hhhCCHHHHHHHHHHH
Confidence 9999999986 5799999975 321 222 2344455555543 333333 3579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 733 Aly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|+.++|+++||||||++||+.+.+.+. +.+.... +|+|+|++||+++.+. .||+|++|++|+|+..|+.+++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIW-ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999876 4565543 5899999999999885 5999999999999999999998754
No 208
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=338.67 Aligned_cols=197 Identities=27% Similarity=0.450 Sum_probs=168.5
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC---CcEEEEcC------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG------------ 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~---~G~I~v~g------------ 658 (1231)
-++++|++++|+. +++|+|+||++++||+++|+|++|||||||+++|.|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4889999999953 47999999999999999999999999999999999999986 49998887
Q ss_pred ------eEEEEeCCCcCCC-CCHHHHHhcCCC------------C---CHHHHHHHHHHhcchHHHhcCCCCCcccccCC
Q 000905 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP------------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~-~TIreNI~fg~~------------~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~ 716 (1231)
.++|+||++.++. .|++||+.++.. . .+++++++++..++.+.++ ..
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CC
Confidence 2799999999887 599999987631 0 1235666777777654433 34
Q ss_pred CCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeC
Q 000905 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEG 793 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~ 793 (1231)
..+||||||||++||||++.+|+++||||||++||.++.+.+. +.++... +++|+|++||+++.+ ..||+|++|++
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 228 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM-DTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5689999999999999999999999999999999999999875 5666554 379999999999975 56999999999
Q ss_pred CeEeEecChHHH
Q 000905 794 GQITQSGNYQEL 805 (1231)
Q Consensus 794 G~I~~~Gt~~eL 805 (1231)
|++++.|+++++
T Consensus 229 g~i~~~g~~~~~ 240 (262)
T PRK09984 229 GHVFYDGSSQQF 240 (262)
T ss_pred CEEEEeCCHHHh
Confidence 999999999996
No 209
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3e-36 Score=337.93 Aligned_cols=198 Identities=27% Similarity=0.416 Sum_probs=169.7
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
++++|+++.|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 678999999953 4799999999999999999999999999999999999999999999987 389
Q ss_pred EEeCCCc-CCCCCHHHHHhcCCC---------C--CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 662 YVSQTSW-IQSGSIRDNILYGKP---------M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 662 yv~Q~~~-lf~~TIreNI~fg~~---------~--~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
|++|++. .++.|++||+.++.. . ++++..++++.+++.+..+ .....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999985 556899999988631 1 1235666777777654332 345689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHh
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
||||++.+|+++||||||++||+++.+.+. +.++... +++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETL-ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999998875 4565543 479999999999998 4699999999999999999998864
No 210
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=337.95 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=177.7
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g--------- 658 (1231)
..+.+++.++.|.. .++|+|+||++++||+++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 7 ~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 35788999999853 4799999999999999999999999999999999999986 799999887
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC---C---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~---~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.++|++|++.+|+.|++|||.++.. + .++++.++++..++.+++.. ..++...+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 2899999999999999999998743 1 23567888888888766543 234677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEe--------CCeEe
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLE--------GGQIT 797 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~--------~G~I~ 797 (1231)
|++||||++++|+++||||||++||+.+.+.+. +.++...+++|+|++||+++.+. .||+|++|+ +|+++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~-~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVE-ELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999876 45666556899999999999765 599999996 89999
Q ss_pred EecChHHHHhc
Q 000905 798 QSGNYQELLLA 808 (1231)
Q Consensus 798 ~~Gt~~eL~~~ 808 (1231)
+.|+++++.+.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 211
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-36 Score=336.01 Aligned_cols=198 Identities=28% Similarity=0.388 Sum_probs=171.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
++++|+++.|+. +++|+|+||++++|++++|+|++|||||||+++|.|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 4699999999999999999999999999999999999999999999987 289
Q ss_pred EEeCCCcC-CCCCHHHHHhcCCC-C------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 662 YVSQTSWI-QSGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 662 yv~Q~~~l-f~~TIreNI~fg~~-~------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
|++|++.+ ++.|++||+.++.. . ++++.+++++..++.+..+ .....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999987 67899999988642 1 1345667777777765433 3456899999999999999
Q ss_pred Hh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 734 VY------NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 734 ly------~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
++ .+|+++||||||++||+.+.+++. +.++... +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL-RLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 99 599999999999999999999875 5666543 5899999999999876 699999999999999999998
Q ss_pred HHh
Q 000905 805 LLL 807 (1231)
Q Consensus 805 L~~ 807 (1231)
+.+
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 865
No 212
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.1e-36 Score=345.00 Aligned_cols=199 Identities=24% Similarity=0.409 Sum_probs=172.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
++++|++++|++ +.+|+|+||++++||.++|+||+|||||||+++|+|+++|++|+|.++| .++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 789999999953 4699999999999999999999999999999999999999999999988 3999
Q ss_pred EeCCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~lf~~-TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
+||++.++.. |++||+.+... .+ .++.+++++..+|.+.. ..+..+||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 9999999875 99999975321 12 34556666666665433 345678999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhc
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
+++|++++|||||++||+.+.+.+. +.+....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIR-NVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999876 466666668999999999998765 999999999999999999998754
No 213
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=333.87 Aligned_cols=199 Identities=21% Similarity=0.385 Sum_probs=167.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|++++|+. +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999953 4799999999999999999999999999999999999999999999887 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~----~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
++|++|++.++. .|++||+.++.. .+. +++.+.++..++ +.....+...||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-----------EHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCC-----------HHHhhcchhhCCHHHHHHHHH
Confidence 899999999887 599999987532 122 233444444433 233456678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHh
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|||++++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIK-RIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999988765 4555443 589999999999765 5699999999999999999999865
No 214
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=3.4e-36 Score=328.15 Aligned_cols=189 Identities=26% Similarity=0.434 Sum_probs=164.1
Q ss_pred EEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEEe
Q 000905 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVS 664 (1231)
Q Consensus 596 ~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv~ 664 (1231)
+++|+++.|+. .++|+||++++||.++|+|++|||||||+++|+|+++|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 68999999952 46899999999999999999999999999999999999999999987 389999
Q ss_pred CCCcCCC-CCHHHHHhcCC-C-C-----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhc
Q 000905 665 QTSWIQS-GSIRDNILYGK-P-M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1231)
Q Consensus 665 Q~~~lf~-~TIreNI~fg~-~-~-----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~ 736 (1231)
|+|.+|. .|++||+.++. + . ++++++++++..++.+.....| .+||||||||++||||+++
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHHhc
Confidence 9999987 49999998642 1 1 2456778888888876666555 3799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecC
Q 000905 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 737 ~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt 801 (1231)
+|+++||||||++||+++.+.+. +.+.... .++|+|+|||+++.+. .||++++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEML-ALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999876 4565543 3789999999999875 599999999999999874
No 215
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=342.88 Aligned_cols=206 Identities=27% Similarity=0.383 Sum_probs=172.6
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-----CCCcEEEEcC--------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-----~~~G~I~v~g-------- 658 (1231)
+..++++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 345899999999953 469999999999999999999999999999999999864 4999998876
Q ss_pred -------eEEEEeCCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 -------~iayv~Q~~~lf~~TIreNI~fg~~---~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
.++|++|++.+++.|++|||.++.. . + +++..++++..++.+.+. .....+...||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHH
Confidence 3899999999999999999998642 1 2 233445566665543221 1234567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecCh
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~ 802 (1231)
||||++||||++++|+++||||||++||+++.+.+. +.++...+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE-DLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999876 46766656789999999999875 5999999999999999999
Q ss_pred HHHHhc
Q 000905 803 QELLLA 808 (1231)
Q Consensus 803 ~eL~~~ 808 (1231)
+++.++
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 998754
No 216
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-36 Score=333.11 Aligned_cols=198 Identities=30% Similarity=0.428 Sum_probs=171.5
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv 663 (1231)
|+++|+++.|+. ++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468999999952 379999999999999999999999999999999999999999999987 49999
Q ss_pred eCCCcCCC-CCHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 664 SQTSWIQS-GSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 664 ~Q~~~lf~-~TIreNI~fg~~~-------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
+|++.+|. .|++||+.++... .+++..+.++.++|.++++.. ..+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHHHH
Confidence 99999885 7999999875321 234556778888887665543 3579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
++|++++|||||++||+.+.+.+. +.++... +++|+|++||+++.++ .||+|++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999875 4565543 3899999999999876 4999999999999999999988764
No 217
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.4e-36 Score=330.33 Aligned_cols=190 Identities=24% Similarity=0.360 Sum_probs=160.7
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
++++|+++.|+. ++++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999952 24799999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCcC-CCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 659 SIAYVSQTSWI-QSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 ~iayv~Q~~~l-f~~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
.++|++|+|.+ ++.|++|||.++.. .++ +++++.++..++.+++. ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 38999999987 57899999987531 222 24556666666655443 3346899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCeEeE
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~ 798 (1231)
|||++++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGIL-RLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999988876 4565543 57999999999998865 89999999999854
No 218
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-36 Score=345.90 Aligned_cols=204 Identities=21% Similarity=0.320 Sum_probs=171.2
Q ss_pred cEEEEeeeEeeCCCC-------CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------
Q 000905 594 SVKIQEGNFSWDPEL-------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~-------~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------- 658 (1231)
-++++|++++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996321 24699999999999999999999999999999999999999999999887
Q ss_pred --------eEEEEeCCCc--CCC-CCHHHHHhcC----CCC----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCc
Q 000905 659 --------SIAYVSQTSW--IQS-GSIRDNILYG----KPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1231)
Q Consensus 659 --------~iayv~Q~~~--lf~-~TIreNI~fg----~~~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~ 719 (1231)
+|+||+|+|. +.. .||.+|+... ... ..++..++++.++|.++. .+ .....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~----~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH------YD----RYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH------hc----CCCcc
Confidence 4999999983 443 5999998632 112 234567778888875322 12 23467
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeE
Q 000905 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQI 796 (1231)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I 796 (1231)
||||||||++||||+..+|+++|+||||++||..+.++|++ .+.... .|.|+|+|||+++.+. .||+|++|++|+|
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN-LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999875 555543 3899999999999986 5999999999999
Q ss_pred eEecChHHHHhc
Q 000905 797 TQSGNYQELLLA 808 (1231)
Q Consensus 797 ~~~Gt~~eL~~~ 808 (1231)
+|.|+.+++.+.
T Consensus 234 ve~g~~~~~~~~ 245 (327)
T PRK11308 234 VEKGTKEQIFNN 245 (327)
T ss_pred EEECCHHHHhcC
Confidence 999999999875
No 219
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.2e-36 Score=335.34 Aligned_cols=198 Identities=23% Similarity=0.291 Sum_probs=163.8
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC--cCCCcEEEEcCe-------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYGS------------- 659 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~--~~~~G~I~v~g~------------- 659 (1231)
++++|++++|+. +++|+|+||+|++||+++|+||+|||||||+++|.|+. +|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 47999999999999999999999999999999999994 799999999872
Q ss_pred -EEEEeCCCcCCCC-CHHHHHhcCCC----------CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCC-cCCh
Q 000905 660 -IAYVSQTSWIQSG-SIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSG 722 (1231)
Q Consensus 660 -iayv~Q~~~lf~~-TIreNI~fg~~----------~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~-~LSG 722 (1231)
++|++|++.++.+ |++||+.+... .+ ++++.++++..++.++.. + .... +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL------N----RSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhc------c----cccccCcCH
Confidence 8999999998875 89999976421 12 234555666666643221 1 1222 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc--cCeEEEEeCCeEeEe
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~--aD~Iivl~~G~I~~~ 799 (1231)
|||||++||||++++|+++||||||++||+.+.+.+. +.+.... +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA-EGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999876 4565543 57999999999999876 799999999999999
Q ss_pred cChHHHH
Q 000905 800 GNYQELL 806 (1231)
Q Consensus 800 Gt~~eL~ 806 (1231)
|+++++.
T Consensus 227 g~~~~~~ 233 (243)
T TIGR01978 227 GDVELAK 233 (243)
T ss_pred cCHHHhc
Confidence 9987653
No 220
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.7e-36 Score=317.92 Aligned_cols=159 Identities=38% Similarity=0.616 Sum_probs=146.1
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
++++|++++|+.. .+++++|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999642 34699999999999999999999999999999999999999999999987 489
Q ss_pred EEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEE
Q 000905 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1231)
Q Consensus 662 yv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 741 (1231)
|++|++++++.|++||+ ||||||||++||||+.++|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEEEEeCCeE
Q 000905 742 LFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1231)
Q Consensus 742 lLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~I 796 (1231)
||||||++||+++.+.+.+ .++... +++|+|++||+++.+..||+|++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQ-AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999998764 565543 58999999999999889999999999975
No 221
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=337.27 Aligned_cols=205 Identities=25% Similarity=0.418 Sum_probs=174.8
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g--------- 658 (1231)
..++++|++++|++ +++|+|+||++++||.++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 4699999999999999999999999999999999999985 489999876
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.|+|++|++.+|+.|++|||.++.. ++ +++..++++.+++.+++.. .....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 3899999999999999999987521 12 2456677788887655432 2345677999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEe-----CCeEeE
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLE-----GGQITQ 798 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~-----~G~I~~ 798 (1231)
|||++||||++++|+++||||||++||+.+.+.+. +.++...+++|+|++||+++.+. .||++++|+ +|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVE-ELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 99999999999999999999999999999998875 46666556799999999999875 599999997 599999
Q ss_pred ecChHHHHhc
Q 000905 799 SGNYQELLLA 808 (1231)
Q Consensus 799 ~Gt~~eL~~~ 808 (1231)
.|+.+++.+.
T Consensus 235 ~~~~~~~~~~ 244 (259)
T PRK14260 235 FGVTTQIFSN 244 (259)
T ss_pred eCCHHHHhcC
Confidence 9999998653
No 222
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-36 Score=349.51 Aligned_cols=197 Identities=27% Similarity=0.451 Sum_probs=170.6
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------- 658 (1231)
+++ |++++|.. . .+ |+||++++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 456 88899853 2 23 99999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCcCCC-CCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 659 -SIAYVSQTSWIQS-GSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 659 -~iayv~Q~~~lf~-~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
.++||+|++.+|. .|++|||.|+.+ .++++.+++++..++.+.++.. ..+||||||||++||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHHHHH
Confidence 3899999999986 699999999854 3567788888888887655543 3589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
++|+++|||||||+||+++.+.+.+ .++...+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLP-YLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999998764 5655432 78999999999876 459999999999999999999998754
No 223
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.5e-36 Score=329.62 Aligned_cols=195 Identities=22% Similarity=0.314 Sum_probs=169.5
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------eEEEEeC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------~iayv~Q 665 (1231)
++++|++++|+. +++|+|+||++++||.++|+|++|||||||+++|+|+++|++|+|.++| .++|+||
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 4799999999999999999999999999999999999999999999987 4899999
Q ss_pred CCcCCC-CCHHHHHhcCC---CCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEE
Q 000905 666 TSWIQS-GSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1231)
Q Consensus 666 ~~~lf~-~TIreNI~fg~---~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 741 (1231)
++.++. .|++||+.++. ..++++..++++..++.+..+ ....+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 998876 69999998643 235677788888888865433 235689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 742 LFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 742 lLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||||||++||+.+.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~-~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELR-ELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999865 5665543 5899999999999875 599999999999999998765
No 224
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.7e-36 Score=329.04 Aligned_cols=187 Identities=28% Similarity=0.442 Sum_probs=158.7
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------e
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------~ 659 (1231)
++++|++++|+. +++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999963 4699999999999999999999999999999999999999999999887 2
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~----~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
++|++|++.++. .|++||+.++. ..+. +++.++++..++.+.++ ....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------hCccccCHHHHHHHHH
Confidence 899999999886 69999998753 2222 34555666666654433 3446899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeE
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQI 796 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I 796 (1231)
|||++++|+++||||||++||+++.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVL-DVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998875 4565543 4899999999999885 5999999999975
No 225
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.5e-36 Score=333.79 Aligned_cols=202 Identities=26% Similarity=0.418 Sum_probs=172.7
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC----CCcEEEEcC-----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG----------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~----~~G~I~v~g----------- 658 (1231)
.++++|++++| . +++|+|+||++++||+++|+|++|||||||+++|.|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 58999999999 2 3699999999999999999999999999999999999999 999999876
Q ss_pred eEEEEeCCCc-CCC--CCHHHHHhc-----CCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 659 SIAYVSQTSW-IQS--GSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 ~iayv~Q~~~-lf~--~TIreNI~f-----g~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
.++||+|++. .|+ .|+.+|+.+ +.+.+++++.++++.+++.+. ++.++....+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3999999984 443 588888753 333345678888888877532 234566778999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHh
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|||++++|+++||||||++||+.+.+.+. +.++... .++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999988765 4565543 3799999999999875 599999999999999999999976
Q ss_pred c
Q 000905 808 A 808 (1231)
Q Consensus 808 ~ 808 (1231)
.
T Consensus 231 ~ 231 (254)
T PRK10418 231 A 231 (254)
T ss_pred C
Confidence 5
No 226
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-36 Score=335.14 Aligned_cols=193 Identities=26% Similarity=0.440 Sum_probs=165.1
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------eEEEEeCC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQT 666 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------~iayv~Q~ 666 (1231)
++++|+++.|+. +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 689999999953 4799999999999999999999999999999999999999999999987 38999999
Q ss_pred CcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC
Q 000905 667 SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1231)
Q Consensus 667 ~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1231)
+.++. .|++||+.++.. .+ ++++.++++..++.+... ....+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 99887 699999987531 22 245667777777754433 345789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEe--CCeEeEecCh
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLE--GGQITQSGNY 802 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~--~G~I~~~Gt~ 802 (1231)
+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+. .||+|++|+ +|+|++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQ-TLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999875 4565542 4899999999999875 599999998 5999998764
No 227
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=331.18 Aligned_cols=206 Identities=26% Similarity=0.412 Sum_probs=176.9
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCC
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~ 671 (1231)
.++++|++++|++ +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4889999999963 4699999999999999999999999999999999999999999999987 6999999998765
Q ss_pred ---CCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000905 672 ---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1231)
Q Consensus 672 ---~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~S 748 (1231)
.|+++|+.+....+++++.++++.+++.+.++. ....||||||||++||||++++|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 489999877654567788899999998765543 356899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhc-C-CcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhcCchHHHHH
Q 000905 749 AVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1231)
Q Consensus 749 alD~~t~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~ 816 (1231)
+||+.+.+.+. +.+.... + ++|+|++||+++.+ ..||+|++|++ +|++.|+++++.+ ...+.+++
T Consensus 150 ~LD~~~~~~l~-~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 150 GVDVNGQVALY-DLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 99999999876 4565543 3 79999999999987 45999999965 7999999999864 33444443
No 228
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=335.08 Aligned_cols=204 Identities=26% Similarity=0.379 Sum_probs=168.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC-----CcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~-----~G~I~v~g---------- 658 (1231)
.++++|++++|++ +++|+|+||+|++||.++|+|++|||||||+++|.|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 47999999999999999999999999999999999999874 89998876
Q ss_pred -----eEEEEeCCCcCCCC-CHHHHHhcCCC---C-CHHH----HHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 -----SIAYVSQTSWIQSG-SIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~-TIreNI~fg~~---~-~~~~----~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.++|++|++.++.. |++||+.++.. . .+++ ..+.++..++.+.+ ++.. .....+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRL----KTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhh----cCCcccCCHHH
Confidence 38999999999884 99999986532 1 2222 23334444443322 2222 24467899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChH
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||++||||++++|+++||||||++||+.+.+.+. +.++...+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIE-DLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999998875 466665568999999999998875 8999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
+++..
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 98764
No 229
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=9.2e-36 Score=335.75 Aligned_cols=213 Identities=19% Similarity=0.324 Sum_probs=174.4
Q ss_pred cEEEEeeeEeeCCC------CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------
Q 000905 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~------~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------- 658 (1231)
.++++|++++|+.. .++++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 124799999999999999999999999999999999999999999999986
Q ss_pred ----eEEEEeCCCc--CCC-CCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 ----SIAYVSQTSW--IQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 ----~iayv~Q~~~--lf~-~TIreNI~fg~----~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
.++|+||++. +++ -|+.+|+.++. ..+ +++..++++.+++.++... ....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS----------YYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh----------cCchhcCHH
Confidence 3899999985 443 48999987532 122 3456777888888433221 234589999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEec
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~G 800 (1231)
||||++||||++++|+++||||||++||+++.+.+. +.+.... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLI-NLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999988765 4565543 38999999999999875 9999999999999999
Q ss_pred ChHHHHhcC--chHHHHHH
Q 000905 801 NYQELLLAG--TAFEQLVN 817 (1231)
Q Consensus 801 t~~eL~~~~--~~~~~l~~ 817 (1231)
+++++.+.. ..+.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 999998653 33445543
No 230
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-36 Score=335.25 Aligned_cols=204 Identities=26% Similarity=0.418 Sum_probs=170.9
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc--C---CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~--~---~~G~I~v~g---------- 658 (1231)
.|+++|+++.|+. +++|+|+||+|++||+++|+|++|||||||+++|.|+.+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 479999999999999999999999999999999999865 4 589998876
Q ss_pred -----eEEEEeCCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.++|++|++.+++.|++||+.++.. .. +++..++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 3899999999999999999987521 11 23445555666554322 2234456779999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
||++||||++++|+++||||||++||+++.+.+. +.+....+++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIE-NMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999875 56666556789999999999875 599999999999999999888
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 7654
No 231
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=336.24 Aligned_cols=205 Identities=24% Similarity=0.344 Sum_probs=174.6
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g--------- 658 (1231)
..|+++|+++.|+. +++|+|+||+|++||.++|+|++|||||||+++|.|++++ ++|+|.++|
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 46999999999963 4699999999999999999999999999999999999863 689998876
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC---C---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~---~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.|+|++|++.+++.|++|||.++.. + .+++..++++.+++.+.+.. ........|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 3899999999999999999988642 1 13445666777777554431 234667889999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEe---------CCeE
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLE---------GGQI 796 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~---------~G~I 796 (1231)
|++||||++++|+++||||||++||+++.+.+. +.+....+++|+|++||+++.+. .||+|++|+ +|++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVE-ELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999875 46666666799999999999875 599999997 8999
Q ss_pred eEecChHHHHhc
Q 000905 797 TQSGNYQELLLA 808 (1231)
Q Consensus 797 ~~~Gt~~eL~~~ 808 (1231)
++.|+.+|+...
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
No 232
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=336.16 Aligned_cols=204 Identities=25% Similarity=0.398 Sum_probs=171.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g---------- 658 (1231)
.++++|++++|+. +++|+|+||+|++||.++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4889999999963 4699999999999999999999999999999999999974 699999876
Q ss_pred -----eEEEEeCCCcCCC-CCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~-~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.++|++|++.++. .|++||+.++.. .+ +++.+++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 2899999999887 599999987531 11 234556666776643332 22345677899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEe------CCeEe
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLE------GGQIT 797 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~------~G~I~ 797 (1231)
|||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|++||+++.+. .||+|++|+ +|+|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE-DLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999999875 56666556799999999999874 699999996 89999
Q ss_pred EecChHHHHhc
Q 000905 798 QSGNYQELLLA 808 (1231)
Q Consensus 798 ~~Gt~~eL~~~ 808 (1231)
+.|+++++...
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999998753
No 233
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.2e-36 Score=344.22 Aligned_cols=187 Identities=24% Similarity=0.404 Sum_probs=162.1
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEEEeCCCcCCCC-CHHH
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVSQTSWIQSG-SIRD 676 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iayv~Q~~~lf~~-TIre 676 (1231)
+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++| .++|+||++.++.. |++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4799999999999999999999999999999999999999999999988 39999999998875 9999
Q ss_pred HHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000905 677 NILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1231)
Q Consensus 677 NI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~Sa 749 (1231)
|+.+... .+ +++.+++++..+|.+..+ .+..+||||||||++||||++++|+++||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9987421 12 345677788887765433 34468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 750 VDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 750 lD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||+.+.+.+.+ .++... +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~-~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWD-YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999998764 565543 5899999999999876 5999999999999999999998754
No 234
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-36 Score=344.97 Aligned_cols=206 Identities=19% Similarity=0.367 Sum_probs=169.2
Q ss_pred EEEEeeeEeeCCCCC-CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc----CCCcEEEEcC-----------
Q 000905 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG----------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~-~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~----~~~G~I~v~g----------- 658 (1231)
++++|++++|+.... .++|+||||+|++||.++|+|+||||||||+++|+|+++ +++|+|.++|
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999964321 369999999999999999999999999999999999997 4899999987
Q ss_pred ------eEEEEeCCCc--CC-CCCHHHHHhc----CCCC----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCC
Q 000905 659 ------SIAYVSQTSW--IQ-SGSIRDNILY----GKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1231)
Q Consensus 659 ------~iayv~Q~~~--lf-~~TIreNI~f----g~~~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LS 721 (1231)
.|+||+|+|. +. .-|+.+|+.. .... .+++..++++..+|.+.. ........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 2999999995 33 2477666542 2111 245667778888775321 12335667899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeE
Q 000905 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQ 798 (1231)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~ 798 (1231)
|||||||+||||+..+|+++|+|||||+||+.+.+.+.+ .+..+. .++|+|+|||+++.+. .||+|++|.+|+|+|
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~-lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE-LLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999874 555543 4899999999999884 699999999999999
Q ss_pred ecChHHHHhcC
Q 000905 799 SGNYQELLLAG 809 (1231)
Q Consensus 799 ~Gt~~eL~~~~ 809 (1231)
.|+.+++.++.
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99999998653
No 235
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=9.3e-36 Score=334.37 Aligned_cols=201 Identities=22% Similarity=0.338 Sum_probs=165.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
.++++|++++|++ +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 4799999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEeCCCc--C-CCCCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcC
Q 000905 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1231)
Q Consensus 659 -------~iayv~Q~~~--l-f~~TIreNI~fg~----~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~L 720 (1231)
.++|++|++. + .+.|+.|||.+.. ..+. ++..++++..++. .+..+.++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~L 152 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID----------AARIDDLPTTF 152 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCC----------hhHHhCCCccC
Confidence 2899999984 3 3458999986421 1121 2223333333332 13455778899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEe
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~ 797 (1231)
|||||||++||||+.++|+++||||||++||+.+.+.+. +.++... .++|+|++||+++.+. .||+|++|++|+++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999876 4565543 3889999999999987 59999999999999
Q ss_pred EecChHHHHhc
Q 000905 798 QSGNYQELLLA 808 (1231)
Q Consensus 798 ~~Gt~~eL~~~ 808 (1231)
+.|+++++..+
T Consensus 232 ~~~~~~~~~~~ 242 (258)
T PRK11701 232 ESGLTDQVLDD 242 (258)
T ss_pred EeCCHHHHhcC
Confidence 99999998754
No 236
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-35 Score=336.79 Aligned_cols=201 Identities=26% Similarity=0.452 Sum_probs=175.3
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~ia 661 (1231)
.++++|++..|.. ++.+|+||||+|++|+.+|++||+|||||||+++|+|++.|++|+|.++| +||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999963 25799999999999999999999999999999999999999999999998 499
Q ss_pred EEeCCCcCCC-CCHHHHHhcCC-----C--CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHH
Q 000905 662 YVSQTSWIQS-GSIRDNILYGK-----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 662 yv~Q~~~lf~-~TIreNI~fg~-----~--~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARA 733 (1231)
|+||+|.++. -|++||+.|.. + .++++++++++..+|.++- ..+-..||||||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 9999998765 59999998732 2 2467889999999887621 24567899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhc
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EK-KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~-kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|..+|+++|||||||+||+...+.+. +.++... ++ +|++++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIW-ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999876 4666554 45 799999999998766 999999999999999999997653
No 237
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=7.2e-36 Score=327.28 Aligned_cols=190 Identities=27% Similarity=0.448 Sum_probs=164.0
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
++++|+++.|+++. .+++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 25799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCcCCC-CCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 659 -~iayv~Q~~~lf~-~TIreNI~fg~~----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
.++|++|++.+|. .|+.||+.++.. .+ ++++.++++.+++.++++..| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 3899999999987 699999987542 22 235677777777776665544 58999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhccCeEEEEeCCeE
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~aD~Iivl~~G~I 796 (1231)
+||||++++|+++||||||++||+++.+.+. +.++... +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVV-ELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999998876 4565554 48999999999998888999999999986
No 238
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.5e-35 Score=342.16 Aligned_cols=213 Identities=17% Similarity=0.368 Sum_probs=172.2
Q ss_pred CcEEEEeeeEeeCCC-CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC---CcEEEEcC----------
Q 000905 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG---------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~-~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~---~G~I~v~g---------- 658 (1231)
.-++++|++++|... ...++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 458999999999642 2346999999999999999999999999999999999999996 99999887
Q ss_pred -------eEEEEeCCCc--CC-CCCHHHHHhcC----CCCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcC
Q 000905 659 -------SIAYVSQTSW--IQ-SGSIRDNILYG----KPMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1231)
Q Consensus 659 -------~iayv~Q~~~--lf-~~TIreNI~fg----~~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~L 720 (1231)
.|+||+|+|. +. ..|+.+||... ...+. ++..+.++..+| |++. +.++.....|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccC
Confidence 3999999983 43 35888887532 12332 233444444443 4433 2356778899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEe
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~ 797 (1231)
|||||||++||||++.+|+++|+||||||||+.+.+.+.+ .+..+. .+.|+|+|||+++.+. .||+|+||++|+|+
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMT-LLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998864 565543 3899999999999886 59999999999999
Q ss_pred EecChHHHHhcC-chHHH
Q 000905 798 QSGNYQELLLAG-TAFEQ 814 (1231)
Q Consensus 798 ~~Gt~~eL~~~~-~~~~~ 814 (1231)
|.|+.+++.+.. ..|.+
T Consensus 242 e~g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 242 EYGNARDVFYQPSHPYSI 259 (330)
T ss_pred EECCHHHHHhCCCCHHHH
Confidence 999999998753 33443
No 239
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6.7e-36 Score=328.90 Aligned_cols=199 Identities=29% Similarity=0.450 Sum_probs=158.9
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc---CCCcEEEEcC----------eE
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------SI 660 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~---~~~G~I~v~g----------~i 660 (1231)
+.++|++|.|+..+ .+++|+|+||++++||.++|+||+|||||||+++|.|+++ |++|+|.++| .+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 57899999997532 3689999999999999999999999999999999999999 9999999987 39
Q ss_pred EEEeCCCcCCCC-CHHHHHhcCCCC-----CHHHHHHHHHHhcchHHHhcCCCCCcccc-cCCCCcCChHHHHHHHHHHH
Q 000905 661 AYVSQTSWIQSG-SIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEI-GQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 661 ayv~Q~~~lf~~-TIreNI~fg~~~-----~~~~~~~vl~~~~L~~di~~lp~G~~T~I-Ge~G~~LSGGQkQRIaLARA 733 (1231)
+|++|++.+|++ |++|||.++... ..+..... ..++ ..++....+.+ .....+||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~----~~~~--~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK----RVED--VLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHH----HHHH--HHHHhhcchhhhcccccCcCHHHHHHHHHHHH
Confidence 999999999987 999999875321 11111100 0001 01222222333 34567999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCc--chhhccCeEEEEeCCeEeEec
Q 000905 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQV--EFLSEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 734 ly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l--~~l~~aD~Iivl~~G~I~~~G 800 (1231)
++++|+++||||||++||+.+.+++.+ .+.... +++|+|++||++ +....||+|++|++|++++.|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~-~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVS-TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999998764 565543 589999999998 346779999999999999876
No 240
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=331.60 Aligned_cols=205 Identities=22% Similarity=0.345 Sum_probs=171.8
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
..+.++|++++|+. +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 46899999999953 4799999999999999999999999999999999999999997776554
Q ss_pred -----eEEEEeCCCcCCCC-CHHHHHhcCCC---C-CHH----HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 -----SIAYVSQTSWIQSG-SIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 -----~iayv~Q~~~lf~~-TIreNI~fg~~---~-~~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.++|++|+|.++.+ |++|||.++.. . +++ +..++++..++.+.+. ...+..+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 38999999999875 99999997532 2 222 3345555555543221 12345678899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChH
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|||++||||++++|+++||||||++||+.+.+.+. +.+....+++|+|+|||+++.+ ..||++++|++|++++.|+++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE-KLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999865 5676665679999999999988 569999999999999999999
Q ss_pred HHHhc
Q 000905 804 ELLLA 808 (1231)
Q Consensus 804 eL~~~ 808 (1231)
|+.+.
T Consensus 238 ~~~~~ 242 (257)
T PRK14246 238 EIFTS 242 (257)
T ss_pred HHHhC
Confidence 98754
No 241
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.3e-35 Score=334.43 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=171.5
Q ss_pred cEEEEeeeEeeCCC------CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------
Q 000905 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~------~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------- 658 (1231)
.|+++|+++.|+.. .++++++|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999631 135799999999999999999999999999999999999999999999887
Q ss_pred -------eEEEEeCCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcC
Q 000905 659 -------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1231)
Q Consensus 659 -------~iayv~Q~~~--lf-~~TIreNI~fg~----~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~L 720 (1231)
.++|++|++. ++ +.|++||+.+.. ..+ .++.++.++..++..+ ..+.....|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 2999999983 33 579999996531 112 2245555555554321 234567789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEe
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~ 797 (1231)
|||||||++||||+.++|+++||||||++||+++.+.+. +++.... .++|+|++||+++.+. .||+|++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI-RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999998875 5666554 3899999999999987 59999999999999
Q ss_pred EecChHHHHhcCchHH
Q 000905 798 QSGNYQELLLAGTAFE 813 (1231)
Q Consensus 798 ~~Gt~~eL~~~~~~~~ 813 (1231)
+.|+++|+......|.
T Consensus 232 ~~g~~~~~~~~~~~~~ 247 (268)
T PRK10419 232 ETQPVGDKLTFSSPAG 247 (268)
T ss_pred eeCChhhccCCCCHHH
Confidence 9999999886555443
No 242
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=342.90 Aligned_cols=212 Identities=19% Similarity=0.291 Sum_probs=172.6
Q ss_pred cEEEEeeeEeeCCC-CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc----CCCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~-~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~----~~~G~I~v~g---------- 658 (1231)
-++++|++++|+.+ ....+++|+||+|++||.++|+|+||||||||+++|+|+.+ +++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 23469999999999999999999999999999999999986 5899999987
Q ss_pred -------eEEEEeCCCcC--C-CCCHHHHHhcC---C---C--C-----CHHHHHHHHHHhcchHHHhcCCCCCcccccC
Q 000905 659 -------SIAYVSQTSWI--Q-SGSIRDNILYG---K---P--M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1231)
Q Consensus 659 -------~iayv~Q~~~l--f-~~TIreNI~fg---~---~--~-----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe 715 (1231)
.|+||+|+|.. . ..||.+||... . . . .+++..++++..+|.+.-+ ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 39999999973 2 46899999642 1 0 0 1346677788888853211 1123
Q ss_pred CCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEe
Q 000905 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLE 792 (1231)
Q Consensus 716 ~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~ 792 (1231)
....|||||||||+||||++.+|+++|||||||+||+.+.+++. +.++.+. .|.|+|+|||+++.+. .||+|++|+
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIF-RLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 45689999999999999999999999999999999999999876 4565543 3899999999999985 599999999
Q ss_pred CCeEeEecChHHHHhcC-chHHH
Q 000905 793 GGQITQSGNYQELLLAG-TAFEQ 814 (1231)
Q Consensus 793 ~G~I~~~Gt~~eL~~~~-~~~~~ 814 (1231)
+|+|++.|+.+++.+.. ..|.+
T Consensus 234 ~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 234 CGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CCEEEEECCHHHHHhCCCCHHHH
Confidence 99999999999998653 34543
No 243
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=332.44 Aligned_cols=198 Identities=27% Similarity=0.368 Sum_probs=168.7
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC--------CcEEEEcC--------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--------SGTVNLYG-------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~--------~G~I~v~g-------- 658 (1231)
++++|++++|+. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|+ +|+|.++|
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999953 47999999999999999999999999999999999999998 99999987
Q ss_pred -----eEEEEeCCCc-CCCCCHHHHHhcCCC--------C---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCC
Q 000905 659 -----SIAYVSQTSW-IQSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1231)
Q Consensus 659 -----~iayv~Q~~~-lf~~TIreNI~fg~~--------~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LS 721 (1231)
.++|++|++. +++.|++|||.++.. . ++++.+++++..++. +..+....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 2799999985 578999999988631 1 123455566666554 33445678999
Q ss_pred hHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhh-ccCeEE
Q 000905 722 GGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRIL 789 (1231)
Q Consensus 722 GGQkQRIaLARAly---------~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~-~aD~Ii 789 (1231)
||||||++||||++ .+|+++||||||++||+.+.+.+. +.+....+ ++|+|+|||+++.+. .||+|+
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~ 226 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL-DTVRRLARDWNLGVLAIVHDPNLAARHADRIA 226 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 99999999999999 599999999999999999999876 45655443 799999999999885 699999
Q ss_pred EEeCCeEeEecChHHHHh
Q 000905 790 VLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 790 vl~~G~I~~~Gt~~eL~~ 807 (1231)
+|++|+|++.|+.+++..
T Consensus 227 ~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 227 MLADGAIVAHGAPADVLT 244 (272)
T ss_pred EEECCeEEEecCHHHHcC
Confidence 999999999999999865
No 244
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=332.13 Aligned_cols=205 Identities=25% Similarity=0.405 Sum_probs=173.7
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC-----CcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~-----~G~I~v~g--------- 658 (1231)
+.++++|++++|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++|+ +|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36899999999953 36999999999999999999999999999999999999985 89887765
Q ss_pred ------eEEEEeCCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 659 ------~iayv~Q~~~lf~~TIreNI~fg~~---~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.++|++|++.+|+.|++||+.++.. . + +++..++++..++.+++.. ..+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 3999999999999999999986521 1 1 2345667777777554432 2356778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeC-----CeE
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEG-----GQI 796 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~-----G~I 796 (1231)
|||++||||++++|+++||||||++||+.+.+.+. +.+.... +++|+|+|||+++.+. .||+|++|++ |++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~-~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE-SLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceE
Confidence 99999999999999999999999999999999876 4555532 4899999999999875 5899999999 999
Q ss_pred eEecChHHHHhc
Q 000905 797 TQSGNYQELLLA 808 (1231)
Q Consensus 797 ~~~Gt~~eL~~~ 808 (1231)
++.|+++++.+.
T Consensus 235 ~~~~~~~~~~~~ 246 (261)
T PRK14258 235 VEFGLTKKIFNS 246 (261)
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
No 245
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=332.87 Aligned_cols=199 Identities=26% Similarity=0.423 Sum_probs=168.2
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------eEEEE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYV 663 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----------~iayv 663 (1231)
.++++|++++|++ ++++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 5899999999963 24799999999999999999999999999999999999999999999987 39999
Q ss_pred eCCCcC---CCCCHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 664 SQTSWI---QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 664 ~Q~~~l---f~~TIreNI~fg~~-----------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
||++.+ +..+++||+.++.. .++++.+++++..++.+..+ ....+||||||||++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGGQKKRVF 152 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHH
Confidence 999865 45689999976421 12345667778887765443 234579999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHh
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
||||++++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+ ..||+++++ +|++++.|+++++..
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARII-SLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 999999999999999999999999999875 4565543 589999999999876 568999777 899999999999863
No 246
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-35 Score=326.99 Aligned_cols=193 Identities=21% Similarity=0.310 Sum_probs=162.0
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCC-CCHHHHHhcCC---CCC
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS-GSIRDNILYGK---PMD 685 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~-~TIreNI~fg~---~~~ 685 (1231)
.++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++|.+++++|++++.+ .|++|||.++. ..+
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~ 116 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFK 116 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999999999999999999999999999998764 69999998642 233
Q ss_pred HHHH----HHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000905 686 KARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761 (1231)
Q Consensus 686 ~~~~----~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~ 761 (1231)
.++. .++++..++.+.+ .....+||||||||++||||++++|+++||||||++||+.+.+.+.+
T Consensus 117 ~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~- 184 (264)
T PRK13546 117 RKEIKAMTPKIIEFSELGEFI-----------YQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD- 184 (264)
T ss_pred HHHHHHHHHHHHHHcCCchhh-----------cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-
Confidence 3333 3345544554333 34567899999999999999999999999999999999999888764
Q ss_pred HHHHh-cCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhcCchHHH
Q 000905 762 CVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1231)
Q Consensus 762 ~i~~~-l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~ 814 (1231)
.+... ..++|+|++||+++.+.. ||+|++|++|+|++.|+++++.++...|.+
T Consensus 185 ~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 185 KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHH
Confidence 45443 358999999999998765 999999999999999999999876544433
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-35 Score=318.47 Aligned_cols=179 Identities=23% Similarity=0.362 Sum_probs=152.0
Q ss_pred cEEEEeeeEeeCCC-CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc---CCCcEEEEcC-----------
Q 000905 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~-~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~---~~~G~I~v~g----------- 658 (1231)
.+.++|++|.|+.. .++++|+|+||++++||+++|+|++|||||||+++|.|+++ |++|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 36899999999854 35679999999999999999999999999999999999999 8999999887
Q ss_pred -eEEEEeCCCcCCC-CCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhc
Q 000905 659 -SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1231)
Q Consensus 659 -~iayv~Q~~~lf~-~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~ 736 (1231)
.++|++|++.++. .|++|||.++.... ..+....||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 3899999998886 59999998753210 224556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccC-cch-hhccCeEEEEeCCeEeEec
Q 000905 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQ-VEF-LSEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 737 ~~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~-l~~-l~~aD~Iivl~~G~I~~~G 800 (1231)
+|+++||||||++||+++.+.+. +.++...+ +.|+|+++|+ .+. ...||+|++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999876 46665543 5677777665 455 4679999999999998765
No 248
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.8e-35 Score=342.86 Aligned_cols=194 Identities=24% Similarity=0.410 Sum_probs=164.8
Q ss_pred eeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------------eEE
Q 000905 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1231)
Q Consensus 599 ~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------------~ia 661 (1231)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78888853 2 35 99999999999999999999999999999999999999998876 289
Q ss_pred EEeCCCcCCCC-CHHHHHhcCCCC-C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 662 YVSQTSWIQSG-SIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 662 yv~Q~~~lf~~-TIreNI~fg~~~-~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
|++|++.+|.. |++|||.|+... + +++++++++..+|.+..+ ....+||||||||++||||+.
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-----------RLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 99999999974 999999987431 1 234667777776655443 344689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
.+|+++|||||||+||+.+.+.+.+ .++... + ++|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILP-YLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999998764 565543 2 799999999999875 59999999999999999999987653
No 249
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-35 Score=307.80 Aligned_cols=207 Identities=29% Similarity=0.459 Sum_probs=175.7
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
-++++|++-.|.. .++|+++||++++||.++++|++|+|||||+++|.|..++.+|+|.++| .
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4688999999964 4799999999999999999999999999999999999999999999998 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCCCCHH-HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKPMDKA-RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~~~~~-~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
|+||||.-.+|. -||+||+..|....++ +..+ ..+++-.+.+|. +......+|.+|||||+|-+||||||.++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999996 5999999988533211 1111 113344555663 34455688999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcch-hhccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
|++++||||+.+|-|...+.||+ .|+.+.+ +-|+++|-++... ++-+|+.+||++|+|+.+|+.+||.++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999985 5666543 6699999999986 6789999999999999999999998763
No 250
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.5e-35 Score=315.09 Aligned_cols=173 Identities=25% Similarity=0.434 Sum_probs=151.2
Q ss_pred cEEEEeeeEeeCCC---CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC--cCCCcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPE---LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~---~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~--~~~~G~I~v~g---------- 658 (1231)
.++++|++++|+.. .++++|+|+||++++||.++|+||+|||||||+++|.|++ +|.+|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 48899999999642 1257999999999999999999999999999999999999 99999999887
Q ss_pred eEEEEeCCCcCCC-CCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 659 ~iayv~Q~~~lf~-~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
.++|++|++.++. .|++|||.++.... .||||||||++||||++++
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~~---------------------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKLR---------------------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHhc---------------------------------cCCHHHHHHHHHHHHHHcC
Confidence 4899999999886 59999997642100 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcc-hh-hccCeEEEEeCCeEeEec
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVE-FL-SEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~-~l-~~aD~Iivl~~G~I~~~G 800 (1231)
|+++||||||++||+++.+.+. +.++... +++|+|++||+++ .+ ..||+|++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999998876 4565543 5899999999996 44 469999999999998764
No 251
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-35 Score=309.01 Aligned_cols=158 Identities=28% Similarity=0.522 Sum_probs=143.6
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
++++|++++|+. .++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 468999999963 3699999999999999999999999999999999999999999999877 3899
Q ss_pred EeCCCcCCCC-CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEE
Q 000905 663 VSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1231)
Q Consensus 663 v~Q~~~lf~~-TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 741 (1231)
++|++.++.+ |++||+. ||||||||++||||++++|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999886 9999984 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeE
Q 000905 742 LFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQI 796 (1231)
Q Consensus 742 lLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I 796 (1231)
||||||++||+++.+.+.+ .++... +++|+|++||+.+.+. .||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWE-LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999998764 565543 5799999999999887 6999999999974
No 252
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-35 Score=314.70 Aligned_cols=173 Identities=22% Similarity=0.360 Sum_probs=150.9
Q ss_pred cEEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC--cCCCcEEEEcC---------eEE
Q 000905 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------SIA 661 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~--~~~~G~I~v~g---------~ia 661 (1231)
.++++|+++.|+++. ++++|+|+||++++||.++|+|++|||||||+++|.|.+ +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 478999999996421 257999999999999999999999999999999999986 48999999987 489
Q ss_pred EEeCCCcCCCC-CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 662 YVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 662 yv~Q~~~lf~~-TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
|++|++.++.. |++||+.++.. ++ +||||||||++||||++++|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 99999988775 99999986421 00 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcch--hhccCeEEEEeC-CeEeEec
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF--LSEVDRILVLEG-GQITQSG 800 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~--l~~aD~Iivl~~-G~I~~~G 800 (1231)
+||||||++||+.+.+.+.+ .+.... +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVR-FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHH-HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999998764 565543 48999999999983 577999999999 9999876
No 253
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-35 Score=319.31 Aligned_cols=184 Identities=30% Similarity=0.443 Sum_probs=156.0
Q ss_pred eeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------------eEE
Q 000905 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1231)
Q Consensus 599 ~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------------~ia 661 (1231)
|++++|++ +.+ |+||++++ |.++|+|++|||||||+++|+|+++|++|+|.++| .++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 78899964 234 99999999 99999999999999999999999999999998876 389
Q ss_pred EEeCCCcCCC-CCHHHHHhcCCCC-----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 662 YVSQTSWIQS-GSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 662 yv~Q~~~lf~-~TIreNI~fg~~~-----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
|++|++.++. .|++|||.++... +++++.+.++..++.+. ......+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHL-----------LNRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhH-----------hhcCcccCCHHHHHHHHHHHHHh
Confidence 9999999985 5999999876431 23455666666666443 33566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
++|+++||||||++||+.+.+.+. +.+.... + ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLL-PELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999998876 4565543 3 799999999999875 69999999999998876
No 254
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-35 Score=306.73 Aligned_cols=158 Identities=41% Similarity=0.667 Sum_probs=145.5
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
++++|+++.|+.. ..++++|+||++++||.++|+||+|||||||+++|.|+++|.+|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999643 23699999999999999999999999999999999999999999999987 389
Q ss_pred EEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEE
Q 000905 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1231)
Q Consensus 662 yv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 741 (1231)
|++|++.+|+.|++||+ ||||||||++||||++++|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCe
Q 000905 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1231)
Q Consensus 742 lLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~ 795 (1231)
||||||++||+.+.+++. +.+....+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~-~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALIL-EALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHH-HHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999988875 56666666899999999999988899999999985
No 255
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-34 Score=339.34 Aligned_cols=210 Identities=21% Similarity=0.246 Sum_probs=174.5
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCC-
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS- 671 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~- 671 (1231)
..++++|++|.|+.+..+++|+|+||+|++|++++|+|++|||||||+++|.|+++|++|+|.++|.-.++++.+.+++
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 3588999999997654457999999999999999999999999999999999999999999999997666666665554
Q ss_pred CCHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEe
Q 000905 672 GSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1231)
Q Consensus 672 ~TIreNI~fg~---~~~~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLD 744 (1231)
.|++|||.++. ..+++ +..++++.+++.++++. ...+||||||||++||||++.+|+++|||
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 59999998743 23332 34567777777655443 45689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhcCchHHH
Q 000905 745 DPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1231)
Q Consensus 745 ep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~ 814 (1231)
|||++||+.+.+.+.+ .+... .+++|+|++||+++.+.. ||+|++|++|++++.|+++++...-..|.+
T Consensus 169 EPTsgLD~~sr~~Lle-lL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~ 239 (549)
T PRK13545 169 EALSVGDQTFTKKCLD-KMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK 239 (549)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHH
Confidence 9999999999998764 56544 358999999999998754 999999999999999999999865444433
No 256
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-34 Score=323.41 Aligned_cols=201 Identities=23% Similarity=0.322 Sum_probs=164.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
.++++|+++.|++ .++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 3689999999999999999999999999999999999999999999875
Q ss_pred -------eEEEEeCCCc--C-CCCCHHHHHhcC-----CC-C--CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcC
Q 000905 659 -------SIAYVSQTSW--I-QSGSIRDNILYG-----KP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1231)
Q Consensus 659 -------~iayv~Q~~~--l-f~~TIreNI~fg-----~~-~--~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~L 720 (1231)
.++|++|++. + +..|+.+||.+. .. . .+++.. +.++.+.-+ .+.......+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~l~~l~l~-~~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAH---------DWLEEVEID-PTRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHH---------HHHHHcCCC-hhhhhcCchhc
Confidence 2799999984 2 346889998642 11 1 112223 334444211 13455677899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEe
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~ 797 (1231)
|||||||++||||++++|+++||||||++||+.+.+.+. +.+.... .++|+|+|||+++.+. .||++++|++|+++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999876 4565543 3899999999999887 59999999999999
Q ss_pred EecChHHHHhc
Q 000905 798 QSGNYQELLLA 808 (1231)
Q Consensus 798 ~~Gt~~eL~~~ 808 (1231)
+.|+.+++...
T Consensus 229 ~~~~~~~~~~~ 239 (253)
T TIGR02323 229 ESGLTDQVLDD 239 (253)
T ss_pred EECCHHHHhcC
Confidence 99999988753
No 257
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-35 Score=313.99 Aligned_cols=187 Identities=30% Similarity=0.463 Sum_probs=165.3
Q ss_pred ceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------------eEEEEeCCCcCC-CCC
Q 000905 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SGS 673 (1231)
Q Consensus 612 ~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------------~iayv~Q~~~lf-~~T 673 (1231)
.++|+||+|+.||+..|-|-||||||||++++.|+++|++|+|.++| +++.|+|+.-|+ +-|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 48899999999999999999999999999999999999999999998 499999998876 569
Q ss_pred HHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000905 674 IRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1231)
Q Consensus 674 IreNI~fg~~~---~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep 746 (1231)
|.||..||.+. + +++-.++++.++|+.+=...| ..||||+||||.|||||..||||+|+|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----------~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-----------NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-----------ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 99999999863 2 356677888899988777666 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcch-hhccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 747 FSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 747 ~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
+|||||--....-++.+.- ..-+||+|+|||+++. ++-.|+|..|+||+|++.||++|++.+.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCc
Confidence 9999999888865554432 2237999999999975 7889999999999999999999999764
No 258
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=306.99 Aligned_cols=159 Identities=34% Similarity=0.473 Sum_probs=143.9
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------e
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------~ 659 (1231)
|+++|++++|+. +++++|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999963 4799999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1231)
++|++|+|.++. .|++||+.+. ||||||||++||||+.++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 899999999885 5999999764 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhh-ccCeEEEEeCCe
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLS-EVDRILVLEGGQ 795 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~~i~~~l~--~kTvIlvTH~l~~l~-~aD~Iivl~~G~ 795 (1231)
+++||||||++||+.+.+.+. +.+....+ ++|+|++||+++.+. .||+|++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999876 45655443 699999999999987 599999999985
No 259
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=9.4e-35 Score=320.59 Aligned_cols=188 Identities=24% Similarity=0.374 Sum_probs=158.1
Q ss_pred ceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC----CCcEEEEcC-----------eEEEEeCCCc-CCC--CC
Q 000905 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG-----------SIAYVSQTSW-IQS--GS 673 (1231)
Q Consensus 612 ~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~----~~G~I~v~g-----------~iayv~Q~~~-lf~--~T 673 (1231)
+++|+||++++||+++|+||+|||||||+++|.|+++| ++|+|.++| .++|++|++. .|+ .|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999887 4999999995 343 69
Q ss_pred HHHHHhcCC-----CC--CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000905 674 IRDNILYGK-----PM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1231)
Q Consensus 674 IreNI~fg~-----~~--~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep 746 (1231)
++||+.+.. .. +++++.++++.+++.+ + .+.......+||||||||++||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999986532 11 1345667777777642 1 1234566789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 747 FSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 747 ~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|++||+.+.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 153 t~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVL-KLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999998875 4565543 3789999999999885 5999999999999999999999754
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9e-35 Score=308.91 Aligned_cols=159 Identities=29% Similarity=0.508 Sum_probs=143.3
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|++++| +|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48899999987 79999999999999999999999999999999999999999999987 4
Q ss_pred EEEEeCCC----cCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 660 IAYVSQTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 660 iayv~Q~~----~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
++|++|++ ..++.|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 89999985 4556899999987531 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCeE
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I 796 (1231)
.+|+++||||||++||+++.+.+. +.++... +++|+|++||+++.+.. ||+|++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999876 4565543 58999999999988766 999999999975
No 261
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=9.5e-35 Score=320.34 Aligned_cols=181 Identities=35% Similarity=0.477 Sum_probs=153.5
Q ss_pred eeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe--------EEEEeCCCcCCC-CCHHHHHhcCC-
Q 000905 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQS-GSIRDNILYGK- 682 (1231)
Q Consensus 613 L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~--------iayv~Q~~~lf~-~TIreNI~fg~- 682 (1231)
|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|. .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999883 589999999887 69999998741
Q ss_pred ----CCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 000905 683 ----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1231)
Q Consensus 683 ----~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t 754 (1231)
..++ ++..+.++.+++.+..+ .....||||||||++||||++++|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 2222 34566777777754433 3356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHH
Q 000905 755 AATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 755 ~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
.+.+. +.+.... .++|+|++||+++.+. .||+|++|++|++++.|+..++
T Consensus 150 ~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQ-EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99876 4565543 3789999999999865 5999999999999998875554
No 262
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3e-34 Score=321.23 Aligned_cols=198 Identities=23% Similarity=0.346 Sum_probs=163.9
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCC--CcCCCcEEEEcC-------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~--~~~~~G~I~v~g------------- 658 (1231)
.++++|+++.|+. +++|+|+||++++||+++|+|++|||||||+++|.|+ ++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5899999999963 4699999999999999999999999999999999998 689999999876
Q ss_pred -eEEEEeCCCcCCCC-CHHHHHhcCCC----------CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCC-cCC
Q 000905 659 -SIAYVSQTSWIQSG-SIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLS 721 (1231)
Q Consensus 659 -~iayv~Q~~~lf~~-TIreNI~fg~~----------~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~-~LS 721 (1231)
.++|++|++.++.+ |+++|+.++.. .+ .+++.++++.+++.+.. .+.... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF----------LSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh----------hccccccCCC
Confidence 27899999998875 89999876421 11 13345566666654211 122222 599
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc--cCeEEEEeCCeEeE
Q 000905 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE--VDRILVLEGGQITQ 798 (1231)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~--aD~Iivl~~G~I~~ 798 (1231)
||||||++||||++++|+++||||||++||+.+.+.+. +.+.... +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999876 4565543 58999999999998875 89999999999999
Q ss_pred ecChHHH
Q 000905 799 SGNYQEL 805 (1231)
Q Consensus 799 ~Gt~~eL 805 (1231)
.|+++++
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9998843
No 263
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.9e-35 Score=366.69 Aligned_cols=191 Identities=28% Similarity=0.415 Sum_probs=163.3
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC---CcEEEEcCe----------EEEEeCCCcCCC-CCH
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS----------IAYVSQTSWIQS-GSI 674 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~---~G~I~v~g~----------iayv~Q~~~lf~-~TI 674 (1231)
++++|+|+|+++++||+++|+||+|||||||+++|.|+.++. +|+|.++|. ++||+|++++++ .||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 578999999999999999999999999999999999999874 899999983 699999999985 599
Q ss_pred HHHHhcCCCC------CHH----HHHHHHHHhcchHHHhcCCCCCcccccCC--CCcCChHHHHHHHHHHHHhcCCCEEE
Q 000905 675 RDNILYGKPM------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQR--GLNLSGGQKQRIQLARAVYNDADIYL 742 (1231)
Q Consensus 675 reNI~fg~~~------~~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~--G~~LSGGQkQRIaLARAly~~~~Ill 742 (1231)
+|||.|+... +++ +++++++..+ |++..+|.||+. +..||||||||++||||++++|++++
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll 189 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF 189 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------chhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE
Confidence 9999986532 212 2333333333 445678999985 48999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcc--hhhccCeEEEEeCCeEeEecChHHHHh
Q 000905 743 FDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVE--FLSEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 743 LDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~--~l~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
||||||+||++++.++++. ++.. .+|+|+|+++|+++ ..+.+|+|++|++|++++.|+++|+.+
T Consensus 190 lDEPtsgLD~~~~~~l~~~-L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 190 CDEPTSGLDSFMAYSVVQV-LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred eeCCCcchhHHHHHHHHHH-HHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999999999998754 5443 46899999999996 368899999999999999999999863
No 264
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.1e-34 Score=314.66 Aligned_cols=180 Identities=28% Similarity=0.432 Sum_probs=153.8
Q ss_pred EEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------------e
Q 000905 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1231)
Q Consensus 597 ~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------------~ 659 (1231)
++|+++.|++ +++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 4799999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCC---C----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~---~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
++|++|++.++. .|++||+.++.. . .+++++++++..++.++.+ ....+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHH
Confidence 899999999987 699999987532 1 2345667777777755433 34567999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEEEE
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVL 791 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl 791 (1231)
||++++|+++||||||++||+.+.+.+. +.++... +++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVL-DLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999875 4565543 489999999999988889999875
No 265
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.1e-34 Score=352.04 Aligned_cols=199 Identities=24% Similarity=0.411 Sum_probs=171.4
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|++++|+. +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 4699999999999999999999999999999999999999999999987 2
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCCC---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
++|++|++.++. .|++||+.++... .+++..++++..++.++. ..+..+||||||||++||||++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 899999998876 4999999987542 235666777777664322 2344679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHh
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
.+|+++||||||++||+.+.+.+.+ .++.. .+|+|+|++||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFS-RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999998764 55544 35899999999999875 599999999999999999998764
No 266
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=7.2e-34 Score=317.43 Aligned_cols=198 Identities=25% Similarity=0.340 Sum_probs=156.9
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC--cCCCcEEEEcC--------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~--~~~~G~I~v~g-------------- 658 (1231)
|+++|+++.|+. +++|+|+||+|++|++++|+|++|||||||+++|.|+. +|++|+|.++|
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 689999999963 46999999999999999999999999999999999995 69999999887
Q ss_pred eEEEEeCCCcCCCC-CHHHHHhcC-------CC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 SIAYVSQTSWIQSG-SIRDNILYG-------KP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 ~iayv~Q~~~lf~~-TIreNI~fg-------~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
.++|++|++.++.. |..+|+.+. .. .+ +++.++.++..+ +|+++.+... ..+||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~--~~~LS~G 149 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLTRSV--NVGFSGG 149 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhcccCC--CCCCCHH
Confidence 29999999987754 545544321 11 11 112222333222 4444433221 2379999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc--cCeEEEEeCCeEeEec
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~--aD~Iivl~~G~I~~~G 800 (1231)
||||++||||++++|+|+||||||++||+.+.+.+. +.++... +++|+|++||+++.+.. +|+|++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA-DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999998875 4565543 47999999999999876 8999999999999999
Q ss_pred ChHHH
Q 000905 801 NYQEL 805 (1231)
Q Consensus 801 t~~eL 805 (1231)
++++.
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 98854
No 267
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.1e-34 Score=307.71 Aligned_cols=172 Identities=30% Similarity=0.407 Sum_probs=149.0
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCC--CcCCCcEEEEcC--------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG-------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~--~~~~~G~I~v~g-------------- 658 (1231)
++++|++++|+. +++++|+||++++||.++|+|++|||||||+++|.|+ ++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999963 4799999999999999999999999999999999999 589999999987
Q ss_pred eEEEEeCCCcCCCC-CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 659 SIAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 659 ~iayv~Q~~~lf~~-TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
.++|+||++.++++ |+++|+ + ....+||||||||++||||+.++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 29999999998876 555544 0 01247999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh--ccCeEEEEeCCeEeEecChHHHH
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS--EVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~--~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
|+++||||||++||+.+.+.+. +++.... +++|+|++||+++.+. .||+|++|++|++.+.| ..|+.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999998875 4565543 4899999999999887 69999999999999999 45453
No 268
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.4e-34 Score=313.66 Aligned_cols=191 Identities=28% Similarity=0.333 Sum_probs=153.5
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeC-CCcC-CCC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ-TSWI-QSG 672 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q-~~~l-f~~ 672 (1231)
+.++|.+..|.. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++|...+..+ ...+ .+.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 566777777753 57999999999999999999999999999999999999999999999997544333 3333 357
Q ss_pred CHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000905 673 SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1231)
Q Consensus 673 TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDe 745 (1231)
|++||+.++.. .+. ++..++++..++.+.+ + ....+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------D----LPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-------h----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999987532 122 2344555555554332 2 2335799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 746 PFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 746 p~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
||++||+.+.+.+.+ .+... .+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQR-RLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999998764 55544 35799999999999875 59999999999998865
No 269
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7.2e-34 Score=316.85 Aligned_cols=192 Identities=25% Similarity=0.422 Sum_probs=161.1
Q ss_pred EEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEEE
Q 000905 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1231)
Q Consensus 596 ~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~iay 662 (1231)
+++|+++. .+|+|+||++++||.++|+|++|||||||+++|.|.+++ +|+|.++| .++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46677763 279999999999999999999999999999999999865 99999987 2899
Q ss_pred EeCCCc-CCCCCHHHHHhcCCCC--C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 663 VSQTSW-IQSGSIRDNILYGKPM--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 663 v~Q~~~-lf~~TIreNI~fg~~~--~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
++|++. .++.|++||+.++.+. + ++++.++++..++.+..+ .....||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHh
Confidence 999975 5678999999987432 2 345667777777754333 345689999999999999999
Q ss_pred c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHH
Q 000905 736 N-------DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 736 ~-------~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
+ +|+++||||||++||+.+.+.+. +.++... +++|+|++||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALD-RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8 67999999999999999988875 5565543 589999999999965 569999999999999999999886
Q ss_pred h
Q 000905 807 L 807 (1231)
Q Consensus 807 ~ 807 (1231)
.
T Consensus 222 ~ 222 (248)
T PRK03695 222 T 222 (248)
T ss_pred C
Confidence 4
No 270
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=285.28 Aligned_cols=179 Identities=27% Similarity=0.423 Sum_probs=157.0
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEEEEeCCCcCCCCCHH
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIR 675 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~iayv~Q~~~lf~~TIr 675 (1231)
+.++|+|+||++.+||.++|+||||||||||++.+.-+.+|++|.+...| +|+||.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 46899999999999999999999999999999999999999999999988 59999999999999999
Q ss_pred HHHhcC-----CCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 000905 676 DNILYG-----KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1231)
Q Consensus 676 eNI~fg-----~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~Sal 750 (1231)
||+.|- +..|.+...+-++..++. ++.+..+-.+||||+||||||+|-|---|+|+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999984 235666666666666553 34455778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhc--CCcEEEEEccCcch-hhccCeEEEEeCCeEeE
Q 000905 751 DAHTAATLFNECVMAAL--EKKTVILVTHQVEF-LSEVDRILVLEGGQITQ 798 (1231)
Q Consensus 751 D~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~ 798 (1231)
|.+..+.| ++.|.... ++..++.|||.... +++||+++-+..|++-+
T Consensus 165 D~~nkr~i-e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 165 DESNKRNI-EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred ChhhHHHH-HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 99999986 45555543 68899999999986 99999999999998744
No 271
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-34 Score=357.63 Aligned_cols=207 Identities=20% Similarity=0.353 Sum_probs=170.5
Q ss_pred CcEEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 593 RSVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
..++++|++++|+... ..++|+||||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3689999999996322 34799999999999999999999999999999999999999999998754
Q ss_pred --------------eEEEEeCCC--cCCC-CCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCcccc
Q 000905 659 --------------SIAYVSQTS--WIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEI 713 (1231)
Q Consensus 659 --------------~iayv~Q~~--~lf~-~TIreNI~fg~----~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~I 713 (1231)
.|+||+|+| -++. .||+|||.++. ..+ +++..++++..+|.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 389999998 4654 69999998752 122 2455566666665310 1122
Q ss_pred cCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEccCcchhh-ccCeEEE
Q 000905 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFLS-EVDRILV 790 (1231)
Q Consensus 714 Ge~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~-~kTvIlvTH~l~~l~-~aD~Iiv 790 (1231)
.....+|||||||||+||||++.+|+++||||||++||+.+.+.+.+ .++.+. + |+|+|+|||+++.+. .||+|++
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 34566899999999999999999999999999999999999998764 565543 3 899999999999864 5999999
Q ss_pred EeCCeEeEecChHHHHhc
Q 000905 791 LEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 791 l~~G~I~~~Gt~~eL~~~ 808 (1231)
|++|+|++.|+++++...
T Consensus 242 l~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 242 MYQGEAVETGSVEQIFHA 259 (623)
T ss_pred eeCCeecccCCHHHhhcC
Confidence 999999999999998754
No 272
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-34 Score=350.66 Aligned_cols=198 Identities=23% Similarity=0.376 Sum_probs=166.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC--CCcEEEEcC-------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~--~~G~I~v~g------------- 658 (1231)
.++++|++++|+. +++|+|+||+|++||+++|+||+|||||||+++|.|+++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999952 4799999999999999999999999999999999999996 899999987
Q ss_pred -eEEEEeCCCcCCC-CCHHHHHhcCCC------CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 -SIAYVSQTSWIQS-GSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 -~iayv~Q~~~lf~-~TIreNI~fg~~------~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.++||+|++.++. .|++|||.++.. .+. ++.+++++..++.+ .......+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHHHH
Confidence 2899999998876 599999998742 122 23444444444422 122345689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
|++||||+..+|+++|||||||+||++..+.+.+ .+... .+++|+|+|||+++.+. .||+|++|++|+|++.|+.++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 9999999999999999999999999999998764 55544 35899999999999875 599999999999999999888
Q ss_pred HH
Q 000905 805 LL 806 (1231)
Q Consensus 805 L~ 806 (1231)
+.
T Consensus 230 ~~ 231 (506)
T PRK13549 230 MT 231 (506)
T ss_pred CC
Confidence 64
No 273
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2e-31 Score=306.55 Aligned_cols=446 Identities=17% Similarity=0.207 Sum_probs=277.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHH---HHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHH
Q 000905 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIV---NYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFG 414 (1231)
Q Consensus 339 ~~~~~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~ii---nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~ 414 (1231)
.|....+..+.|..+..-+|++-++-..-+.-.+..+.|- .|++.|++++..... ....+..+|+.++.-.+-++.
T Consensus 143 ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~ 222 (659)
T KOG0060|consen 143 KFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFE 222 (659)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhh
Confidence 3455677888999998888887665322111111112222 478889988765432 223333445555444455555
Q ss_pred HHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHH
Q 000905 415 VVGLGALPGLVLF-LICGLLNV----PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKE 489 (1231)
Q Consensus 415 ~lg~~~l~gl~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e 489 (1231)
..||...+.+..- ++...++. |+.++..+ ++...-|-|.+. .++..|-+.|-+|+-++.-...++..-+.-
T Consensus 223 s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~---qeklEGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~~~~~f~~L 298 (659)
T KOG0060|consen 223 SAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVE---QEKLEGDFRYKH-SRLRVNAEEIAFYRGGQVEHQRTDQRFRNL 298 (659)
T ss_pred hcCcccHHHHHHHHHHHHHHHhhhccchhHHHHH---HHHhhcchhhhe-eeeeecchhhhhhccCchHHHHHHHHHHHH
Confidence 5554332222111 11222222 33333322 222233444433 345566777888876543333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhC--CCCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000905 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGC---ALTG--SAPLNASTIFTVLA----TLRSMGEPVRMIPEALSIMI 560 (1231)
Q Consensus 490 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~l~~--~~~lt~~~~f~~l~----~~~~l~~pl~~l~~~i~~~~ 560 (1231)
++.+++.........++....--+..++.++.. ...+ .+.+++...+..++ .+..+...+..+......+.
T Consensus 299 v~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls 378 (659)
T KOG0060|consen 299 VQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLS 378 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 222222111111101100000011111111000 0011 13566766554332 23334445555555555666
Q ss_pred HHHHHHHHHHHHhccc-CC-------------CCchhh-------hccccCCCCcEEEEeeeEeeCCCCCCCceeeEEEE
Q 000905 561 QVKVSFDRINAFLLDH-EL-------------NNDDVR-------RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLD 619 (1231)
Q Consensus 561 ~a~vs~~Ri~~fl~~~-e~-------------~~~~~~-------~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~~inl~ 619 (1231)
+-..-..||.++.+.- +. ..+... .......+..|++++|+++=|.+ +..+.+|+||+
T Consensus 379 ~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~ 457 (659)
T KOG0060|consen 379 RLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLE 457 (659)
T ss_pred HhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-CceeeeeeeeE
Confidence 6666677888776310 00 000000 01112345789999999997764 44567889999
Q ss_pred eeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEc--C---eEEEEeCCCcCCCCCHHHHHhcCC--------CCCH
Q 000905 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---SIAYVSQTSWIQSGSIRDNILYGK--------PMDK 686 (1231)
Q Consensus 620 i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~--g---~iayv~Q~~~lf~~TIreNI~fg~--------~~~~ 686 (1231)
|+.|+.+.|+||||||||||++.+.|+++..+|++.-. | .+-|+||.|+.-.||+||-+.+-. -.++
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d 537 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASD 537 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCH
Confidence 99999999999999999999999999999999999753 3 399999999999999999999852 1578
Q ss_pred HHHHHHHHHhcchHHHhcCCCCCccccc-CCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000905 687 ARYDKAIKACALDKDINNFDHGDLTEIG-QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765 (1231)
Q Consensus 687 ~~~~~vl~~~~L~~di~~lp~G~~T~IG-e~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~ 765 (1231)
+++.+.++.++|..-++. -+|+|+++- |=+..||+|++||+|.||-+|.+|++-+|||+|||||.++|..+.+.| ++
T Consensus 538 ~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~-r~ 615 (659)
T KOG0060|consen 538 EDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC-RE 615 (659)
T ss_pred HHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHH-HH
Confidence 999999999999876665 467776654 558899999999999999999999999999999999999999987654 22
Q ss_pred hcCCcEEEEEccCcchhhccCeEEEEeC
Q 000905 766 ALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1231)
Q Consensus 766 ~l~~kTvIlvTH~l~~l~~aD~Iivl~~ 793 (1231)
.|-|.|-|.||-+.-+.-|.++-|+.
T Consensus 616 --~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 616 --MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred --cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 48999999999999999999999986
No 274
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7e-34 Score=314.72 Aligned_cols=179 Identities=24% Similarity=0.367 Sum_probs=148.2
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEEEe-CCCcCC-CCCHH
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVS-QTSWIQ-SGSIR 675 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iayv~-Q~~~lf-~~TIr 675 (1231)
+++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| .++|++ |++.++ +.|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 5799999999999999999999999999999999999999999999877 489997 556665 57999
Q ss_pred HHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000905 676 DNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1231)
Q Consensus 676 eNI~fg~~---~~~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~S 748 (1231)
||+.++.. .+++ +..++++.+++.+.. ++ +..+||||||||++||||++++|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976532 2222 334455555554322 22 345799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 749 AVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 749 alD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
+||+++.+.+. +.+.... +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 183 ~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIR-NFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHH-HHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999876 4565543 3789999999999875 49999999999998765
No 275
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-34 Score=355.16 Aligned_cols=204 Identities=19% Similarity=0.299 Sum_probs=171.1
Q ss_pred CcEEEEeeeEeeCCCC--------CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------
Q 000905 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~--------~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------ 658 (1231)
..++++|+++.|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 3589999999996311 24699999999999999999999999999999999999999999999977
Q ss_pred ----------eEEEEeCCCc--CC-CCCHHHHHhcCC---CC-C----HHHHHHHHHHhcchH-HHhcCCCCCcccccCC
Q 000905 659 ----------SIAYVSQTSW--IQ-SGSIRDNILYGK---PM-D----KARYDKAIKACALDK-DINNFDHGDLTEIGQR 716 (1231)
Q Consensus 659 ----------~iayv~Q~~~--lf-~~TIreNI~fg~---~~-~----~~~~~~vl~~~~L~~-di~~lp~G~~T~IGe~ 716 (1231)
.|+||+|+|. ++ +.||+||+.++. .. + .+++.++++.++|.+ ..+. .
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~-----------~ 460 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR-----------Y 460 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC-----------C
Confidence 3899999984 55 469999997632 11 1 245667788888753 3333 2
Q ss_pred CCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeC
Q 000905 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEG 793 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~ 793 (1231)
..+|||||||||+||||+..+|+++|||||||+||+.+.+++. +.++... .++|+|+|||+++.+. .||+|++|++
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~-~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII-NLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999986 4565543 3799999999999875 5999999999
Q ss_pred CeEeEecChHHHHhc
Q 000905 794 GQITQSGNYQELLLA 808 (1231)
Q Consensus 794 G~I~~~Gt~~eL~~~ 808 (1231)
|+|++.|+.+++...
T Consensus 540 G~iv~~g~~~~i~~~ 554 (623)
T PRK10261 540 GQIVEIGPRRAVFEN 554 (623)
T ss_pred CEEEEecCHHHHhcC
Confidence 999999999999764
No 276
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.7e-33 Score=351.49 Aligned_cols=191 Identities=25% Similarity=0.367 Sum_probs=163.0
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC--CcEEEEcC---------eEEEEeCCCcCCC-CCHHH
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--SGTVNLYG---------SIAYVSQTSWIQS-GSIRD 676 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~--~G~I~v~g---------~iayv~Q~~~lf~-~TIre 676 (1231)
++++|+|+|+++++||++||+||+|||||||+++|.|..+|. +|+|.++| +++||+|++.++. .|++|
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 356999999999999999999999999999999999999885 89999998 3899999999985 59999
Q ss_pred HHhcCC------CCCHH----HHHHHHHHhcchHHHhcCCCCCcccccCC-CCcCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000905 677 NILYGK------PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1231)
Q Consensus 677 NI~fg~------~~~~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IllLDe 745 (1231)
|+.|+. ..+++ +.+++++..+| ++..+|.||++ +..||||||||++||||+.++|+|++|||
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE 232 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC
Confidence 998852 12332 23444444444 44568888865 67899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcch--hhccCeEEEEeCCeEeEecChHHHHh
Q 000905 746 PFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 746 p~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~--l~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|||+||+.++.++.+ .++... +|+|+|++||+++. .+.+|+|++|++|++++.|+++++.+
T Consensus 233 PtsgLD~~~~~~l~~-~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 233 PTSGLDATAAYRLVL-TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCcCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999864 565543 68999999999984 56799999999999999999999874
No 277
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-34 Score=289.67 Aligned_cols=200 Identities=25% Similarity=0.357 Sum_probs=170.1
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
+++.+++.+|++ ...+++|+||+++.||.++|.|++|+||||+|+.|.+++.|++|+|.++| +||.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 577889999975 24589999999999999999999999999999999999999999999998 5888
Q ss_pred EeCCCcCC-CCCHHHHHhcCCC-C------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH
Q 000905 663 VSQTSWIQ-SGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1231)
Q Consensus 663 v~Q~~~lf-~~TIreNI~fg~~-~------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl 734 (1231)
++-+.-|+ ..|.||||.|... + .+.+..+..+.-++.+-++ .+-.++|-|+||||+||||+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 88776666 4699999986432 2 2456666777766665543 34456999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 735 y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
.+||+|++||||||+||.-+.+.+ ++-+.... .||++|+.||-++.++ -||+|+++++|+++..|+.+++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~-~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKF-HDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHH-HHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999998865 55565544 5999999999999987 7999999999999999999999765
No 278
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-34 Score=350.51 Aligned_cols=199 Identities=23% Similarity=0.356 Sum_probs=167.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|++++|++ +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999953 4699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCC----------CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHH
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~----------~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
++||+|++.++. .|++||+.++.. .+ +++..++++.+++.+. ......+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHH
Confidence 899999998876 499999987631 01 1234455555554321 123446899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecCh
Q 000905 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 725 kQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~ 802 (1231)
|||++||||+..+|+++||||||++||+.+.+.+.+ .+... .+|+|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 999999999999999999999999999999998764 55543 35899999999999875 5999999999999999999
Q ss_pred HHHHh
Q 000905 803 QELLL 807 (1231)
Q Consensus 803 ~eL~~ 807 (1231)
+++..
T Consensus 230 ~~~~~ 234 (510)
T PRK09700 230 SDVSN 234 (510)
T ss_pred hhCCH
Confidence 88753
No 279
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-33 Score=305.37 Aligned_cols=181 Identities=24% Similarity=0.339 Sum_probs=153.1
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
++++|++++|++ +++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 678999999963 4699999999999999999999999999999999999999999999987 4899
Q ss_pred EeCCCcCC-CCCHHHHHhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCC
Q 000905 663 VSQTSWIQ-SGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1231)
Q Consensus 663 v~Q~~~lf-~~TIreNI~fg~~--~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 739 (1231)
++|++.++ +.|++||+.++.. .++++..++++..++.+..+ ....+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-----------YPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999886 6799999998642 23445666666665543221 2234799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhccCeEEE
Q 000905 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILV 790 (1231)
Q Consensus 740 IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~Iiv 790 (1231)
++||||||++||+.+.+.+. +.+... .+++|+|++||+.+.+.+||.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999875 456554 358999999999999999997654
No 280
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.3e-34 Score=348.03 Aligned_cols=198 Identities=20% Similarity=0.352 Sum_probs=165.9
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
-|+++|++++|+. +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4889999999953 4799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCCC-------CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGKP-------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~~-------~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
++|++|++.++. -|++|||.++.. .+. ++..++++..++.+. ......+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 899999988775 599999998642 122 234445555554321 123345799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHH
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
++||||+..+|+++||||||++||+.+.+.+. +.+... .+++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999999999876 455543 35789999999999875 5999999999999999998876
Q ss_pred H
Q 000905 806 L 806 (1231)
Q Consensus 806 ~ 806 (1231)
.
T Consensus 229 ~ 229 (501)
T PRK10762 229 T 229 (501)
T ss_pred C
Confidence 4
No 281
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=330.88 Aligned_cols=213 Identities=21% Similarity=0.377 Sum_probs=176.5
Q ss_pred CcEEEEeeeEeeCCC--------CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------
Q 000905 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~--------~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------ 658 (1231)
.-++++|++..|... ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 457899999999742 134689999999999999999999999999999999999999999999977
Q ss_pred ---------eEEEEeCCCcC---CCCCHHHHHhcC----CCC----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCC
Q 000905 659 ---------SIAYVSQTSWI---QSGSIRDNILYG----KPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1231)
Q Consensus 659 ---------~iayv~Q~~~l---f~~TIreNI~fg----~~~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~ 718 (1231)
++-+|.|+|+= -..||+++|.-- ... -++++.+.++..+|.+++ ..-...
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~----------l~ryP~ 428 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF----------LDRYPH 428 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH----------HhcCch
Confidence 48899999973 367999999631 121 234567778888888642 223456
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeCCe
Q 000905 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1231)
Q Consensus 719 ~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~G~ 795 (1231)
.|||||||||||||||..+|+++++|||+||||+-+.+++.+ .+..+- -|-|.|+|||+++.+++ ||+|+||++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln-Ll~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN-LLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH-HHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 799999999999999999999999999999999999999875 454432 37899999999999865 99999999999
Q ss_pred EeEecChHHHHhc-CchHHHHH
Q 000905 796 ITQSGNYQELLLA-GTAFEQLV 816 (1231)
Q Consensus 796 I~~~Gt~~eL~~~-~~~~~~l~ 816 (1231)
|+|.|+.+++.+. ...|.+.+
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHH
Confidence 9999999998875 34565443
No 282
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.2e-33 Score=303.08 Aligned_cols=182 Identities=24% Similarity=0.362 Sum_probs=156.7
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
++++|+++.|+. +++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999963 4699999999999999999999999999999999999999999999886 4899
Q ss_pred EeCCCcCC-CCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 663 VSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 663 v~Q~~~lf-~~TIreNI~fg~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
++|++.++ +.|++||+.+..+ .++++++++++..++.+... ....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 6899999988654 36778888999998875432 23467999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcch-hhccCeEEEE
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF-LSEVDRILVL 791 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~-l~~aD~Iivl 791 (1231)
+||||||++||+.+.+.+. +.+.... +++|+|++||+... ...+|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999998875 4565443 58999999998765 5667888776
No 283
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-33 Score=305.77 Aligned_cols=186 Identities=23% Similarity=0.332 Sum_probs=155.4
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------eEEE
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----------~iay 662 (1231)
..++++|++++|++ +++++|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 35899999999953 4699999999999999999999999999999999999999999999988 2899
Q ss_pred EeCCCcCCCC-CHHHHHhcCCCC----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 663 VSQTSWIQSG-SIRDNILYGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 663 v~Q~~~lf~~-TIreNI~fg~~~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
++|++.++.. |++||+.++.+. .+++.+++++..++.+. . ..+..+||||||||++||||++++
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~----~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------E----DTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------c----cCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998876 999999765321 23444555555554322 2 234468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeC
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEG 793 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~ 793 (1231)
|++++|||||++||+...+.+. +.++.. .+++|+|++||+++.+. .||++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999998765 456543 45799999999999874 6899999874
No 284
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=8.6e-34 Score=300.81 Aligned_cols=176 Identities=28% Similarity=0.460 Sum_probs=142.6
Q ss_pred EEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-EEEEeCCCcCCCCCH
Q 000905 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGSI 674 (1231)
Q Consensus 596 ~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~-iayv~Q~~~lf~~TI 674 (1231)
+++|+++.|+. +++|+|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++|. +. + .-...+
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~---~---~~~~~~ 71 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA---S---LSPKEL 71 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC---c---CCHHHH
Confidence 47899999963 46999999999999999999999999999999999999999999999984 10 0 000012
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 000905 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1231)
Q Consensus 675 reNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t 754 (1231)
+..|.+- .++++.+++.+++. ..+.+||||||||++||||+.++|+++||||||++||+++
T Consensus 72 ~~~i~~~--------~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 72 ARKIAYV--------PQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred HHHHhHH--------HHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 2222211 11777778776544 3467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CcEEEEEccCcchh-hccCeEEEEeCCeEeEec
Q 000905 755 AATLFNECVMAALE--KKTVILVTHQVEFL-SEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 755 ~~~i~~~~i~~~l~--~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~G 800 (1231)
.+.+. +.+....+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 133 ~~~~~-~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 133 QIELL-ELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 88865 56665543 78999999999987 569999999999998754
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=345.74 Aligned_cols=195 Identities=26% Similarity=0.344 Sum_probs=162.2
Q ss_pred EEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------eEEE
Q 000905 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIAY 662 (1231)
Q Consensus 597 ~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~iay 662 (1231)
++|++++|++ +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3688999953 4799999999999999999999999999999999999999999999987 3899
Q ss_pred EeCCCcCCC-CCHHHHHhcCCC------CCHH----HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 663 VSQTSWIQS-GSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 663 v~Q~~~lf~-~TIreNI~fg~~------~~~~----~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
++|++.++. .|++||+.++.. .+.+ +.+++++.+++. ........+||||||||++||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHH
Confidence 999997764 699999997642 1222 233344444332 222345678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHH
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
||+.++|+++||||||++||+.+.+.+.+ .+... .+++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999998764 45543 35899999999999875 59999999999999999988864
No 286
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-33 Score=302.94 Aligned_cols=183 Identities=25% Similarity=0.335 Sum_probs=157.3
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------eEEEEe
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVS 664 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----------~iayv~ 664 (1231)
++++|+++.|+. +.+|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++| .++|++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 789999999963 3699999999999999999999999999999999999999999999988 379999
Q ss_pred CCCcCC-CCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 665 QTSWIQ-SGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 665 Q~~~lf-~~TIreNI~fg~~---~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
|++.++ +.|++||+.+... .++++..++++..++.++.+ .| ..+||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~----------~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LP----------FGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CC----------hhhcCHHHHHHHHHHHHHhcCCCE
Confidence 887664 6899999987532 34566888888888875433 22 247999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhccCeEEEEeC
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEG 793 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~Iivl~~ 793 (1231)
+||||||++||+.+.+++. +.+... .+++|+|++||+++.++. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999876 456543 368999999999999988 99988854
No 287
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=344.63 Aligned_cols=193 Identities=23% Similarity=0.359 Sum_probs=162.5
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|++++|++ +++|+|+||++++||+++|+|++|||||||+++|.|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4889999999953 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCcCCCC-CHHHHHhcCCC------CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 660 IAYVSQTSWIQSG-SIRDNILYGKP------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 660 iayv~Q~~~lf~~-TIreNI~fg~~------~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
|+|++|++.++.. |++||+.++.. .+ +++..++++.+++.+. ......+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHH
Confidence 8999999988875 99999998631 12 2345556666555321 1234568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecC
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt 801 (1231)
+||||++.+|+++||||||++||+++.+.+.+ .+... .+|+|+|+|||+++.+. .||+|++|++|+|++.++
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999998764 55443 35899999999999875 599999999999987665
No 288
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-33 Score=303.14 Aligned_cols=182 Identities=25% Similarity=0.304 Sum_probs=156.8
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
++++|++++|+. +++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 678999999963 4699999999999999999999999999999999999999999999987 3899
Q ss_pred EeCCCcCCC-CCHHHHHhcCCC----CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 663 VSQTSWIQS-GSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 663 v~Q~~~lf~-~TIreNI~fg~~----~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
++|++.+++ .|++|||.++.+ .++++++++++..++.+..+ ....+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 699999987643 24567888999998875543 23467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhcc-CeEEEE
Q 000905 738 ADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEV-DRILVL 791 (1231)
Q Consensus 738 ~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~a-D~Iivl 791 (1231)
|++++|||||++||+.+.+.+. +.++.. .+++|+|++||+++.+..| ++++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999875 456554 3579999999999999765 466665
No 289
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.6e-33 Score=292.01 Aligned_cols=159 Identities=26% Similarity=0.434 Sum_probs=129.9
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-EEEEeCCCcCCCCC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGS 673 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~-iayv~Q~~~lf~~T 673 (1231)
++++|++++|+. +++++|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++|. +.. .+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~---------~~ 68 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF---------AS 68 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc---------CC
Confidence 468999999963 47999999999999999999999999999999999999999999999884 110 00
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 000905 674 IRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753 (1231)
Q Consensus 674 IreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~ 753 (1231)
.++ .+. ..+...|+ ||||||||++||||++++|+++||||||++||++
T Consensus 69 ~~~-----------~~~---------~~i~~~~q------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 69 PRD-----------ARR---------AGIAMVYQ------------LSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred HHH-----------HHh---------cCeEEEEe------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 000 000 00001111 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeE
Q 000905 754 TAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQ 798 (1231)
Q Consensus 754 t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~ 798 (1231)
+.+++. +.++... +++|+|++||+++.+. .||++++|++|++++
T Consensus 117 ~~~~l~-~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 117 EVERLF-KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999876 4565543 5899999999999775 599999999999975
No 290
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-33 Score=300.61 Aligned_cols=179 Identities=18% Similarity=0.261 Sum_probs=152.9
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------eEEEEeC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------~iayv~Q 665 (1231)
++++|++++|+. +. +.++||+|++||+++|+|++|||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 2 l~~~~l~~~~~~---~~-l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KN-LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cE-EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 679999999953 34 4459999999999999999999999999999999999999999998 2899999
Q ss_pred CCcC-CCCCHHHHHhcCCCC--CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEE
Q 000905 666 TSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1231)
Q Consensus 666 ~~~l-f~~TIreNI~fg~~~--~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~Ill 742 (1231)
++.+ ++.|++|||.++.+. ++++++++++.+++.+..+ .++.+||||||||++||||++++|+++|
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 778999999886542 4566777888888765433 4567899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhhccCeEE
Q 000905 743 FDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRIL 789 (1231)
Q Consensus 743 LDep~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~l~~aD~Ii 789 (1231)
|||||++||+.+.+.+. +.++. ..+++|+|++||+++.++.||-|.
T Consensus 147 lDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 147 LDEVETNLSKENRDLLN-NLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999988765 45543 346899999999999999999763
No 291
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-33 Score=310.31 Aligned_cols=192 Identities=22% Similarity=0.348 Sum_probs=158.1
Q ss_pred EeeCCCCCCCceeeEEEEee-----CCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-eEEEEeCCCc-CCCCCH
Q 000905 602 FSWDPELAIPTLRGVNLDIK-----WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSW-IQSGSI 674 (1231)
Q Consensus 602 f~y~~~~~~~~L~~inl~i~-----~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-~iayv~Q~~~-lf~~TI 674 (1231)
|+|++. ...++|++|+++ +||+++|+|++|||||||+++|.|+++|++|+|.++| .|+|+||++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 567643 358888988887 7999999999999999999999999999999999999 8999999987 478999
Q ss_pred HHHHhcCCC-C--CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 000905 675 RDNILYGKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1231)
Q Consensus 675 reNI~fg~~-~--~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD 751 (1231)
+||+.+... . .+++..++++.+++.+.++ ....+||||||||++||||+.++|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999976432 1 2344566777777654332 3456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEe--EecChHHHHh
Q 000905 752 AHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQIT--QSGNYQELLL 807 (1231)
Q Consensus 752 ~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~--~~Gt~~eL~~ 807 (1231)
+.+...+. +.++... .++|+|+|||+++.+. .||+|++|+++..+ ..++++++.+
T Consensus 148 ~~~~~~l~-~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 148 VEQRLMAS-KVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 99998865 4566553 4899999999999887 59999999776544 5677777653
No 292
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-33 Score=344.15 Aligned_cols=197 Identities=22% Similarity=0.400 Sum_probs=162.8
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC--CCcEEEEcC--------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG-------------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~--~~G~I~v~g-------------- 658 (1231)
++++|++++|+. +++|+|+||++++||+++|+||+|||||||+++|.|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999953 4699999999999999999999999999999999999987 799999987
Q ss_pred eEEEEeCCCcCCC-CCHHHHHhcCCC-------CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 SIAYVSQTSWIQS-GSIRDNILYGKP-------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 ~iayv~Q~~~lf~-~TIreNI~fg~~-------~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
.++||+|++.++. .|++||+.++.. .+. ++.+++++..++.+.. ++. ...+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~----~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTR----PVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccC----chhhCCHHHHH
Confidence 3899999998776 599999988643 121 2344445554442211 112 24579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
|++||||++++|+++||||||++||+.+.+.+.+ .++.. .+|+|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9999999999999999999999999999998764 55543 35889999999999875 499999999999999998766
Q ss_pred H
Q 000905 805 L 805 (1231)
Q Consensus 805 L 805 (1231)
+
T Consensus 228 ~ 228 (500)
T TIGR02633 228 M 228 (500)
T ss_pred C
Confidence 4
No 293
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2e-33 Score=308.29 Aligned_cols=178 Identities=31% Similarity=0.491 Sum_probs=151.1
Q ss_pred EEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe--------EEEEeCCCcC---CCCCHHHHHhcCC----
Q 000905 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWI---QSGSIRDNILYGK---- 682 (1231)
Q Consensus 618 l~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~--------iayv~Q~~~l---f~~TIreNI~fg~---- 682 (1231)
|++++||+++|+|++|||||||+++|.|+++|++|+|.++|. ++|++|++.+ ++.|++|||.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999983 9999999876 4589999998752
Q ss_pred -----C--CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 000905 683 -----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1231)
Q Consensus 683 -----~--~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~ 755 (1231)
+ .++++..++++.+++.+..+ ....+||||||||++||||++++|+++||||||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELAD-----------RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 12345677777777754332 23456999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 756 ATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 756 ~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
+.+.+ .+.... +++|+|++||+++.+. .||+|+++ +|++++.|+++++.++
T Consensus 150 ~~l~~-~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 150 ELLTE-LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 98764 565543 5899999999999775 59999999 8999999999998664
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-33 Score=344.71 Aligned_cols=208 Identities=22% Similarity=0.376 Sum_probs=168.8
Q ss_pred CcEEEEeeeEeeCC--CCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEc-C-----------
Q 000905 593 RSVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G----------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~--~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~-g----------- 658 (1231)
..++++|++++|+. +..+++|+|+||+|++||+++|+||+|||||||+++|.|+.+|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 35999999999953 123479999999999999999999999999999999999999999999984 3
Q ss_pred --------eEEEEeCCCcCCC-CCHHHHHhcCCC--CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 --------SIAYVSQTSWIQS-GSIRDNILYGKP--MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 --------~iayv~Q~~~lf~-~TIreNI~fg~~--~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
+++|+||++.+++ .|++||+.++.. .. +++..++++.+++.+.- + +.........||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~---~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK---A---EEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc---c---hhhhhCChhhCCHH
Confidence 2899999998776 599999976321 11 23455566666664200 0 00122445679999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
||||++||||+..+|+++||||||++||+++.+.+. +.++... .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g 510 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVT-HSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999876 4565543 3799999999999875 59999999999999999
Q ss_pred ChHHHHh
Q 000905 801 NYQELLL 807 (1231)
Q Consensus 801 t~~eL~~ 807 (1231)
+++++.+
T Consensus 511 ~~~~~~~ 517 (520)
T TIGR03269 511 DPEEIVE 517 (520)
T ss_pred CHHHHHh
Confidence 9988754
No 295
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=291.15 Aligned_cols=206 Identities=22% Similarity=0.386 Sum_probs=170.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.+..+|+..+|.. +++.+|+||++++||.|++.||+|+||||....+.|+.+|++|+|.++| .
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4677888889953 5799999999999999999999999999999999999999999999998 3
Q ss_pred EEEEeCCCcCCCC-CHHHHHhcCCCCCH---HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh
Q 000905 660 IAYVSQTSWIQSG-SIRDNILYGKPMDK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 660 iayv~Q~~~lf~~-TIreNI~fg~~~~~---~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly 735 (1231)
|+|.||||-+|.+ ||+|||..--++.+ ++-++-.+.-+|-+++. ....-..+|.+||||+|.|+-|||||.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~-----i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH-----ITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc-----hHHHhcCcccccccchHHHHHHHHHHh
Confidence 9999999999976 99999986555322 22222222233333332 222334679999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcc-hhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~-~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
.+|+.+||||||+++||.+-..| ++.+..+. +|--+++.-|++. ++.-|||.+++.+|+|..+|+++|+.++
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dI-q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDI-QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHH-HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999886 56665543 4667777779985 7899999999999999999999999865
No 296
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.8e-33 Score=306.74 Aligned_cols=186 Identities=24% Similarity=0.357 Sum_probs=152.0
Q ss_pred EEEEeeeEeeCCC---C-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEc--C----------
Q 000905 595 VKIQEGNFSWDPE---L-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~---~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~--g---------- 658 (1231)
++++|++++|+.. . .+++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6789999999631 1 2469999999999999999999999999999999999999999999986 3
Q ss_pred ---------eEEEEeCCCcCCC-CCHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCC
Q 000905 659 ---------SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1231)
Q Consensus 659 ---------~iayv~Q~~~lf~-~TIreNI~fg~---~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LS 721 (1231)
.++|++|++.++. .|++|||.++. ..+ +++..++++..++.++.. ...+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 3899999998876 59999997631 122 234455555555543221 13467899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEE
Q 000905 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVL 791 (1231)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl 791 (1231)
||||||++||||++++|+++||||||++||+++.+.+. +.++... +++|+|++||+++.+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV-ELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999876 4565543 5899999999999875 69999876
No 297
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.1e-33 Score=341.36 Aligned_cols=199 Identities=23% Similarity=0.327 Sum_probs=169.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eE
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~i 660 (1231)
-|+++|++++|+. +++|+|+||++++||+++|+||+|||||||+++|.|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3789999999963 3699999999999999999999999999999999999999999999876 28
Q ss_pred EEEeCCCcC---------CCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 661 AYVSQTSWI---------QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 661 ayv~Q~~~l---------f~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
+|++|++.+ +..|++||+.++.+ ++++.+++++..++.+..+ .....||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHH
Confidence 999998753 24699999876532 3567778888887764333 34467999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
||+..+|+++||||||++||+.+.+.+.+ .+... .+|+|+|+|||+++.+. .||+|++|++|+++..|+.+++.+.
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAE-LLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 99999999999999999999999998764 55543 34799999999999875 5999999999999999999987653
No 298
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.2e-33 Score=344.06 Aligned_cols=206 Identities=20% Similarity=0.361 Sum_probs=168.9
Q ss_pred cEEEEeeeEeeCCC-CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC---------
Q 000905 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~-~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g--------- 658 (1231)
-++++|++++|+.+ ..+++|+|+||++++||.++|+||||||||||+++|.|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 125799999999999999999999999999999999999986 799998865
Q ss_pred --------eEEEEeCCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCc
Q 000905 659 --------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1231)
Q Consensus 659 --------~iayv~Q~~~--lf-~~TIreNI~fg~----~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~ 719 (1231)
.++|++|+|. ++ ..|++||+.++. ..+ .++.+++++.+++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3899999985 44 359999986421 121 345667777777743111 11234568
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeE
Q 000905 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQI 796 (1231)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I 796 (1231)
||||||||++||||++.+|+++|||||||+||+++.+.+. +.++... .++|+|+|||+++.+. .||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL-QLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999876 4565543 3899999999999875 5999999999999
Q ss_pred eEecChHHHHhc
Q 000905 797 TQSGNYQELLLA 808 (1231)
Q Consensus 797 ~~~Gt~~eL~~~ 808 (1231)
++.|+.+++...
T Consensus 236 ~~~g~~~~~~~~ 247 (529)
T PRK15134 236 VEQNRAATLFSA 247 (529)
T ss_pred EEeCCHHHHhhC
Confidence 999999998754
No 299
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.4e-33 Score=344.82 Aligned_cols=203 Identities=19% Similarity=0.340 Sum_probs=167.8
Q ss_pred cEEEEeeeEeeCCC--------CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------
Q 000905 594 SVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~--------~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------- 658 (1231)
.++++|+++.|+.. .++++|+|+||+|++||.++|+||+|||||||+++|.|+++ ++|+|.++|
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 58999999999521 13579999999999999999999999999999999999995 899999887
Q ss_pred ---------eEEEEeCCC--cCCC-CCHHHHHhcCCC-----CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCC
Q 000905 659 ---------SIAYVSQTS--WIQS-GSIRDNILYGKP-----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1231)
Q Consensus 659 ---------~iayv~Q~~--~lf~-~TIreNI~fg~~-----~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G 717 (1231)
.++|++|++ .++. .|++||+.++.. .+ +++..++++..++.++. .....
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET----------RHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHH----------HhcCC
Confidence 289999998 3554 699999987521 22 23455666666664221 12345
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCC
Q 000905 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGG 794 (1231)
Q Consensus 718 ~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G 794 (1231)
.+||||||||++||||+..+|+++||||||++||+++.+.+.+ .++... .++|+|+|||+++.+. .||+|++|++|
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA-LLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 6799999999999999999999999999999999999998764 565543 3799999999999875 59999999999
Q ss_pred eEeEecChHHHHhc
Q 000905 795 QITQSGNYQELLLA 808 (1231)
Q Consensus 795 ~I~~~Gt~~eL~~~ 808 (1231)
+|++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999998753
No 300
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.4e-33 Score=343.36 Aligned_cols=198 Identities=26% Similarity=0.404 Sum_probs=166.9
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC--cCCCcEEEEc---------------
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLY--------------- 657 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~--~~~~G~I~v~--------------- 657 (1231)
|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999952 47999999999999999999999999999999999996 7999999885
Q ss_pred --------C-----------------------eEEEEeCC-CcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhc
Q 000905 658 --------G-----------------------SIAYVSQT-SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACA 697 (1231)
Q Consensus 658 --------g-----------------------~iayv~Q~-~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~ 697 (1231)
| .++|++|+ +.+++ .|++||+.++.. .+ ++++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 56665 599999987521 22 245666777777
Q ss_pred chHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEE
Q 000905 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILV 775 (1231)
Q Consensus 698 L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlv 775 (1231)
+.+..+ ....+||||||||++||||+..+|+++||||||++||+++.+.+.+ .+.... .++|+|+|
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN-ALEEAVKASGISMVLT 225 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEE
Confidence 754432 3456799999999999999999999999999999999999998764 565543 37999999
Q ss_pred ccCcchhh-ccCeEEEEeCCeEeEecChHHHHh
Q 000905 776 THQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 776 TH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
||+++.+. .||+|++|++|++++.|+++++..
T Consensus 226 tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 226 SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred eCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999875 599999999999999999998865
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6e-33 Score=343.93 Aligned_cols=207 Identities=26% Similarity=0.372 Sum_probs=162.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCC
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~ 671 (1231)
.|+++|++++|+. ++++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.+++ .|+||+|+|.+++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 25799999999999999999999999999999999999999999999874 6999999999986
Q ss_pred C-CHHHHHhcCCC-C----------------C-H---------HHHHHHHHHhc-------chHHHhcCCCCCcccccCC
Q 000905 672 G-SIRDNILYGKP-M----------------D-K---------ARYDKAIKACA-------LDKDINNFDHGDLTEIGQR 716 (1231)
Q Consensus 672 ~-TIreNI~fg~~-~----------------~-~---------~~~~~vl~~~~-------L~~di~~lp~G~~T~IGe~ 716 (1231)
. |++||+.++.. + . + .++.+.++.++ +.+.++.+ |.. ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~-~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RCP-PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CCC-cccCc
Confidence 5 99999987521 0 0 0 00011111111 11111211 111 12344
Q ss_pred CCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCe
Q 000905 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~ 795 (1231)
..+||||||||++||||++++|+++|||||||+||+.+.+.+. +.++.. ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLE-QFLHDY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 5689999999999999999999999999999999999999875 456554 3599999999998765 89999999999
Q ss_pred Ee-EecChHHHHhc
Q 000905 796 IT-QSGNYQELLLA 808 (1231)
Q Consensus 796 I~-~~Gt~~eL~~~ 808 (1231)
++ ..|+++++.+.
T Consensus 238 i~~~~g~~~~~~~~ 251 (556)
T PRK11819 238 GIPWEGNYSSWLEQ 251 (556)
T ss_pred EEEecCCHHHHHHH
Confidence 86 78999987653
No 302
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=6.5e-33 Score=298.85 Aligned_cols=179 Identities=26% Similarity=0.332 Sum_probs=150.1
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eEEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~iay 662 (1231)
++++|+++.|+. +++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468999999963 4799999999999999999999999999999999999999999999987 3899
Q ss_pred EeCCCcCCC-CCHHHHHhcCCCC---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC
Q 000905 663 VSQTSWIQS-GSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1231)
Q Consensus 663 v~Q~~~lf~-~TIreNI~fg~~~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1231)
++|++.+++ .|++||+.+..+. +++++.++++..++.+.++ ....+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998876 7999999875432 2446788888888876543 234579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhccCeEE
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRIL 789 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~Ii 789 (1231)
++++|||||++||+.+.+.+. +.+... .+++|+|++||+...+.. |+++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLA-GLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 999999999999999988764 566554 468999999999854433 5544
No 303
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7e-33 Score=343.28 Aligned_cols=207 Identities=26% Similarity=0.350 Sum_probs=169.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCC
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~ 671 (1231)
-++++|++++|++ ++++|+|+||+|++|++++|+|++|||||||+++|.|+++|++|+|.+++ .|+||+|+|++++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4789999999962 24799999999999999999999999999999999999999999999975 6999999999885
Q ss_pred -CCHHHHHhcCCC-------------------CC--------HHHHHHHHHHhcchH-------HHhcCCCCCcccccCC
Q 000905 672 -GSIRDNILYGKP-------------------MD--------KARYDKAIKACALDK-------DINNFDHGDLTEIGQR 716 (1231)
Q Consensus 672 -~TIreNI~fg~~-------------------~~--------~~~~~~vl~~~~L~~-------di~~lp~G~~T~IGe~ 716 (1231)
.|++|||.++.. .+ .+++.++++.++..+ -++.+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 599999987521 11 123555566666432 12222 221 12455
Q ss_pred CCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCe
Q 000905 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~ 795 (1231)
..+||||||||++||||++++|+++||||||++||+++.+.+. +.+... ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~-~~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLE-QHLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 6789999999999999999999999999999999999999875 455543 3699999999998865 89999999999
Q ss_pred Ee-EecChHHHHhc
Q 000905 796 IT-QSGNYQELLLA 808 (1231)
Q Consensus 796 I~-~~Gt~~eL~~~ 808 (1231)
++ ..|++++..+.
T Consensus 236 i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 236 GIPWEGNYSSWLEQ 249 (552)
T ss_pred EEEecCCHHHHHHH
Confidence 76 78999987653
No 304
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.1e-33 Score=274.94 Aligned_cols=195 Identities=26% Similarity=0.408 Sum_probs=165.5
Q ss_pred cEEEEeeeEeeCCC-CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~-~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
.|++++++..-... .+-.+|++++|.|++||.+|||||||||||||+..+.|+-+|++|+|.+.|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 46677776655432 235799999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCCcC-CCCCHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 ---SIAYVSQTSWI-QSGSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 ---~iayv~Q~~~l-f~~TIreNI~fg~~-------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
+|++|+|...| -|.|--||+..-.+ ...+.-++-+++.+|.+-+...| .+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 59999999875 57899999975322 22344677788888887776665 5799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEe
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM-AALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~-~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~ 799 (1231)
||||||+...|+|++-||||-+||.+|+++|.+-.+. ..-.|.|.|+|||+.+...+|||++-|++|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999999999999999999999998764443 23369999999999999999999999999999863
No 305
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-33 Score=344.04 Aligned_cols=202 Identities=19% Similarity=0.317 Sum_probs=164.7
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc-CCCcEEEEcC--------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG-------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~-~~~G~I~v~g-------------- 658 (1231)
.++++|+++.|+.+++.++|+|+||+|++||+++|+|++|||||||+++|+|+++ |++|+|.++|
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999953223569999999999999999999999999999999999998 5999999876
Q ss_pred eEEEEeCCC---cCC-CCCHHHHHhcCCC--------CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 659 SIAYVSQTS---WIQ-SGSIRDNILYGKP--------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 659 ~iayv~Q~~---~lf-~~TIreNI~fg~~--------~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
.++|++|++ .++ +.|+.||+.++.. .+. ++.++.++.+++..+ .......+|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA----------SPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCC----------CcccccccCCH
Confidence 289999996 355 5699999987521 121 234455555554210 12244568999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
|||||++||||+..+|+++||||||++||+.+.+.+.+ .+... .+|+|+|+|||+++.+. .||++++|++|+|+..|
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999998764 55544 35899999999999875 59999999999999999
Q ss_pred ChHHHH
Q 000905 801 NYQELL 806 (1231)
Q Consensus 801 t~~eL~ 806 (1231)
+.+++.
T Consensus 488 ~~~~~~ 493 (506)
T PRK13549 488 INHNLT 493 (506)
T ss_pred ccccCC
Confidence 888763
No 306
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-33 Score=341.51 Aligned_cols=197 Identities=20% Similarity=0.378 Sum_probs=162.4
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCC-
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS- 671 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~- 671 (1231)
|+++|++++|+. +++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .|+|++|++.++.
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 689999999953 4799999999999999999999999999999999999999999999986 6999999987775
Q ss_pred CCHHHHHhcCCC-C--------------------------------------CHHHHHHHHHHhcchHHHhcCCCCCccc
Q 000905 672 GSIRDNILYGKP-M--------------------------------------DKARYDKAIKACALDKDINNFDHGDLTE 712 (1231)
Q Consensus 672 ~TIreNI~fg~~-~--------------------------------------~~~~~~~vl~~~~L~~di~~lp~G~~T~ 712 (1231)
.|++||+.++.. . .+++..++++..++.+..
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---------- 148 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ---------- 148 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH----------
Confidence 599999987531 0 011222333333332111
Q ss_pred ccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEE
Q 000905 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVL 791 (1231)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl 791 (1231)
-.....+||||||||++||||++.+|+++||||||++||+++.+.+.+ .+.. .++|+|+|||+++.+. .||+|++|
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~--~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLED-VLNE--RNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH-HHHh--CCCeEEEEeCCHHHHHhhcceEEEE
Confidence 113456899999999999999999999999999999999999998754 4543 4899999999999875 58999999
Q ss_pred eCCeE-eEecChHHHHh
Q 000905 792 EGGQI-TQSGNYQELLL 807 (1231)
Q Consensus 792 ~~G~I-~~~Gt~~eL~~ 807 (1231)
++|++ ++.|++++.++
T Consensus 226 ~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 226 DYGELRVYPGNYDEYMT 242 (530)
T ss_pred eCCEEEEecCCHHHHHH
Confidence 99999 47999998875
No 307
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-33 Score=282.60 Aligned_cols=195 Identities=27% Similarity=0.426 Sum_probs=161.0
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe--------EEEEeCC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQT 666 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~--------iayv~Q~ 666 (1231)
...++++.+|+.. ..++|+|+|++|.+||+++++|||||||||||+++.|+++|..|+|.++|+ =|.|.|+
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 3456788899754 356999999999999999999999999999999999999999999999984 7999999
Q ss_pred CcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC
Q 000905 667 SWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1231)
Q Consensus 667 ~~lf~-~TIreNI~fg~~---~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~ 738 (1231)
+-|+. -|+.||+.||.. .++ +...+.+..++|.+.= + ..--.||||||||+.|||||..+|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-------~----~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-------H----KYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-------c----cceEeecchHHHHHHHHHHhhcCc
Confidence 88876 699999999965 232 3334445555554321 1 224579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcch-hhccCeEEEEe--CCeEeEecCh
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEF-LSEVDRILVLE--GGQITQSGNY 802 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~-l~~aD~Iivl~--~G~I~~~Gt~ 802 (1231)
+.++||||++|||+-|.+++ |+.+... ..||-+++|||.++. +--|++++||+ .|||++.=+.
T Consensus 152 ~~LlLDEPfgAlDa~tRe~m-QelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 152 QLLLLDEPFGALDALTREQM-QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred ceEeecCchhhHHHHHHHHH-HHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999999986 5555443 369999999999986 66799999996 6899986543
No 308
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.2e-33 Score=324.68 Aligned_cols=206 Identities=24% Similarity=0.400 Sum_probs=172.0
Q ss_pred cEEEEeeeEeeCCCCC-CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC----CcEEEEcC----------
Q 000905 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----SGTVNLYG---------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~-~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~----~G~I~v~g---------- 658 (1231)
-++++|++..|..... .++++||||++.+||.+||||.|||||||+.++|+|+.++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5889999998875432 25999999999999999999999999999999999999988 89999887
Q ss_pred -------eEEEEeCCCc-CCCC--CHHHHHh----cCCCC----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcC
Q 000905 659 -------SIAYVSQTSW-IQSG--SIRDNIL----YGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1231)
Q Consensus 659 -------~iayv~Q~~~-lf~~--TIreNI~----fg~~~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~L 720 (1231)
.|||++|+|+ .+|- ||.+-|. ...+. ..++..+.++..+|.+.... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4999999987 5664 7766664 22222 34556666777777554443 2345789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEe
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~ 797 (1231)
|||||||+.||+|+..||+++|+||||+|||+.+.++|.+ .++.+. .|.++|+|||.+..+. -||+|+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~-llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD-LLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH-HHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999874 566554 6899999999999875 59999999999999
Q ss_pred EecChHHHHhcC
Q 000905 798 QSGNYQELLLAG 809 (1231)
Q Consensus 798 ~~Gt~~eL~~~~ 809 (1231)
|.|+.+++.++.
T Consensus 235 E~G~~~~i~~~p 246 (539)
T COG1123 235 ETGPTEEILSNP 246 (539)
T ss_pred EecCHHHHHhcc
Confidence 999999999764
No 309
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=7.9e-33 Score=301.09 Aligned_cols=186 Identities=17% Similarity=0.243 Sum_probs=153.1
Q ss_pred ceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEE-EcCeEEEEeCCCcCCCC-CHHHHHhcCC---CCCH
Q 000905 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-LYGSIAYVSQTSWIQSG-SIRDNILYGK---PMDK 686 (1231)
Q Consensus 612 ~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~-v~g~iayv~Q~~~lf~~-TIreNI~fg~---~~~~ 686 (1231)
+|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|. ++|....+.|++.+++. |++|||.+.. ..+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 69999999999999999999999999999999999999999997 88865556778888875 9999998743 2344
Q ss_pred HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 000905 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766 (1231)
Q Consensus 687 ~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~ 766 (1231)
++..+.+. +...+++..++.+ ..||||||||++||||++++|+++|||||++++|+++.+.+.+ .+...
T Consensus 82 ~~~~~~~~------~~~~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~-~l~~~ 150 (213)
T PRK15177 82 DEFSHFCY------QLTQLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA-ALACQ 150 (213)
T ss_pred HHHHHHHH------HHhChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH-HHHHH
Confidence 44333221 1223444444444 4599999999999999999999999999999999999988754 45444
Q ss_pred cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 767 LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 767 l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
++++|+|++||+++.+. .||+|++|++|++++.|+-++..+.
T Consensus 151 ~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 151 LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL 193 (213)
T ss_pred hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence 57789999999999885 6999999999999999998888644
No 310
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-33 Score=282.57 Aligned_cols=200 Identities=30% Similarity=0.433 Sum_probs=166.6
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
|+.+|++++-. .+.+|++++|++++||.+||+||+|+||||||++|.||+.|++|++.++| +-|
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 67788888764 35799999999999999999999999999999999999999999999998 379
Q ss_pred EEeCCCcC-CCCCHHHHHhcCCC-C----C--HHH--HHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 662 YVSQTSWI-QSGSIRDNILYGKP-M----D--KAR--YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 662 yv~Q~~~l-f~~TIreNI~fg~~-~----~--~~~--~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
..||+..+ |.-|++|-+.+|+- . + ++. .++++.+|++ ..|.+-+ -..||||++|||.||
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~----~~la~R~-------y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL----SGLAGRD-------YRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcCh----hhhhccc-------hhhcCchHHHHHHHH
Confidence 99999887 99999999999862 2 2 222 4555555554 4343322 357999999999999
Q ss_pred HHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHH
Q 000905 732 RAVYN------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 732 RAly~------~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
|.|.+ ++++++|||||||||.+...++++-+-.-..+|-.|+.|-|+++.. ..||+|++|.+||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 4458999999999999999888753322334689999999999974 6799999999999999999999
Q ss_pred HHhc
Q 000905 805 LLLA 808 (1231)
Q Consensus 805 L~~~ 808 (1231)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8864
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=338.71 Aligned_cols=201 Identities=24% Similarity=0.386 Sum_probs=170.6
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCc--
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~-- 668 (1231)
..++++|++++|+. +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 46999999999953 4699999999999999999999999999999999999999999999988 6999999974
Q ss_pred CC-CCCHHHHHhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000905 669 IQ-SGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1231)
Q Consensus 669 lf-~~TIreNI~fg~--~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDe 745 (1231)
++ +.|++||+.+.. ..++++.+++++..++..+. ......+||||||||++||||++++|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD----------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH----------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 44 369999996532 23456777888888774221 124456899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEe-EecChHHHHhcC
Q 000905 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLLAG 809 (1231)
Q Consensus 746 p~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~-~~Gt~~eL~~~~ 809 (1231)
||++||+.+.+.+.+ .++.. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++..
T Consensus 465 Pt~~LD~~~~~~l~~-~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 465 PTNHMDMESIESLNM-ALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CCCCCCHHHHHHHHH-HHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 999999999988764 56554 4599999999998764 9999999999998 889999887653
No 312
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-33 Score=295.00 Aligned_cols=183 Identities=26% Similarity=0.458 Sum_probs=164.5
Q ss_pred eEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------------eEEEEeCCCcCCC-CCHHH
Q 000905 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS-GSIRD 676 (1231)
Q Consensus 615 ~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------------~iayv~Q~~~lf~-~TIre 676 (1231)
++||+.+.-..+|+-|+||||||||+++|.|+..|++|.|.++| +||||+||+-||. -|||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68999998789999999999999999999999999999999998 5999999999996 59999
Q ss_pred HHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 000905 677 NILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1231)
Q Consensus 677 NI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~ 755 (1231)
|+.||... +.++++++++.-++..-++..| .+||||+||||||+|||+.+|+++++|||+|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99999876 5778999999999999988877 57999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhc--CCcEEEEEccCcch-hhccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 756 ATLFNECVMAAL--EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 756 ~~i~~~~i~~~l--~~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
++|+. -+..+. -+--++.|||.+.. ++-||+|++|+||++...|.-+|..++.
T Consensus 165 ~Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 88764 333332 25579999999976 6779999999999999999999998653
No 313
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-33 Score=275.90 Aligned_cols=201 Identities=24% Similarity=0.431 Sum_probs=171.7
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
..++++|+...|.. ..+||+||++.++|+.+.|+|.|||||||+|++|.=+-.|.+|.|.++|
T Consensus 5 ~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 46888999988864 4699999999999999999999999999999999999999999999987
Q ss_pred ------------eEEEEeCCCcCCC-CCHHHHHh------cCCCCC--HHHHHHHHHHhcchHHHhcCCCCCcccccCCC
Q 000905 659 ------------SIAYVSQTSWIQS-GSIRDNIL------YGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1231)
Q Consensus 659 ------------~iayv~Q~~~lf~-~TIreNI~------fg~~~~--~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G 717 (1231)
+.+.|.|..-|.+ .|+-||+. +|.+-+ -|+-+.-+...++.+--+.-|
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------
Confidence 3899999998875 69999986 343322 245566677777776555444
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-cCeEEEEeCCe
Q 000905 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1231)
Q Consensus 718 ~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~ 795 (1231)
..|||||+||+||||||.-+|+++|+||||||||++---.+. ++++.+ -.|||.++|||.+.+.++ +.+|+.+.+|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVL-kv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHH-HHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecce
Confidence 579999999999999999999999999999999999877765 455544 479999999999999887 57999999999
Q ss_pred EeEecChHHHHhc
Q 000905 796 ITQSGNYQELLLA 808 (1231)
Q Consensus 796 I~~~Gt~~eL~~~ 808 (1231)
|.|+|+++++..+
T Consensus 230 iEE~G~P~qvf~n 242 (256)
T COG4598 230 IEEEGPPEQVFGN 242 (256)
T ss_pred ecccCChHHHhcC
Confidence 9999999999864
No 314
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-32 Score=300.47 Aligned_cols=211 Identities=24% Similarity=0.442 Sum_probs=169.7
Q ss_pred EEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC----------
Q 000905 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1231)
Q Consensus 595 I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g---------- 658 (1231)
++++|++..|..+. ...+++||||++++||.+||||.|||||||+.++|+|++++ .+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57889988886532 35799999999999999999999999999999999999983 578998887
Q ss_pred -------eEEEEeCCCcC-CC--CCHHHHHh----cCCCC-----CHHHHHHHHHHhcchH---HHhcCCCCCcccccCC
Q 000905 659 -------SIAYVSQTSWI-QS--GSIRDNIL----YGKPM-----DKARYDKAIKACALDK---DINNFDHGDLTEIGQR 716 (1231)
Q Consensus 659 -------~iayv~Q~~~l-f~--~TIreNI~----fg~~~-----~~~~~~~vl~~~~L~~---di~~lp~G~~T~IGe~ 716 (1231)
.|||++|+|-- +| -||.+-|. ..... ..++..+.++..++.+ -++..|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 49999999852 33 35555543 22212 2346677777787764 234444
Q ss_pred CCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeC
Q 000905 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEG 793 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~ 793 (1231)
..||||||||+.||-|+..+|+++|-||||+|||..+.++|++ .++++. .|.|+|+|||++..+ ..||+|.||.+
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa 229 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRVAVMYA 229 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC
Confidence 5799999999999999999999999999999999999999874 565543 599999999999976 56999999999
Q ss_pred CeEeEecChHHHHhcCc-hHH-HHHH
Q 000905 794 GQITQSGNYQELLLAGT-AFE-QLVN 817 (1231)
Q Consensus 794 G~I~~~Gt~~eL~~~~~-~~~-~l~~ 817 (1231)
|+|+|.|+.+|+.++.. .|. .|++
T Consensus 230 G~iVE~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 230 GRIVEEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred cEEEEeCCHHHHhcCCCChHHHHHHH
Confidence 99999999999987643 354 3444
No 315
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=9.4e-33 Score=295.67 Aligned_cols=160 Identities=27% Similarity=0.431 Sum_probs=136.0
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------eEEEEeCCC--cCCCC
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------SIAYVSQTS--WIQSG 672 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------------~iayv~Q~~--~lf~~ 672 (1231)
+++|+|+||+|++||.++|+||+|||||||+++|.|.++|++|+|.++| .++|++|+| .+++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 5799999999999999999999999999999999999999999999876 389999998 57889
Q ss_pred CHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000905 673 SIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1231)
Q Consensus 673 TIreNI~fg~---~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDe 745 (1231)
|++|||.++. ..++ ++.+++++..++.+..+. +..+||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999998853 1222 356667777777654433 346899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcch
Q 000905 746 PFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF 781 (1231)
Q Consensus 746 p~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~ 781 (1231)
||++||+.+.+.+. +.+... .+++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~-~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQML-AILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeecccc
Confidence 99999999999876 456554 358999999999864
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.5e-32 Score=363.88 Aligned_cols=203 Identities=24% Similarity=0.364 Sum_probs=175.9
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------eE
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~i 660 (1231)
..|+++|+++.|+++ ++++++|+||++++||+++|+|++|||||||+++|.|+.+|++|+|.++| .+
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 469999999999632 35799999999999999999999999999999999999999999999988 38
Q ss_pred EEEeCCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHH
Q 000905 661 AYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1231)
Q Consensus 661 ayv~Q~~~lf~-~TIreNI~fg~~---~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLAR 732 (1231)
|||||++.+++ .|++|||.|+.. .+ ++++++.++..+|.+.. ..+..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999998886 599999987421 22 34566677777664432 3456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 733 Aly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|+..+|+++|||||||+||+.+.+++.+ .+++..+|+|+|++||+++.+. .||+|++|++|+++..|+.++|.++
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~-lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWD-LLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999864 5666667999999999999875 5999999999999999999999765
No 317
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.2e-32 Score=277.55 Aligned_cols=141 Identities=33% Similarity=0.527 Sum_probs=129.6
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCCC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~~ 672 (1231)
++++|+++.|++ .++++|+||++++||.++|+|++|||||||+++|.|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468999999963 3699999999999999999999999999999999999999999999998 5999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 000905 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1231)
Q Consensus 673 TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~ 752 (1231)
||||||||++||||+.++|+++|||||+++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCe
Q 000905 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1231)
Q Consensus 753 ~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~ 795 (1231)
++.+.+. +.++.. ++|+|++||+++.+.. ||++++|++|+
T Consensus 104 ~~~~~l~-~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALE-EALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHH-HHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9998865 456554 5899999999998865 89999999986
No 318
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=5.7e-32 Score=339.73 Aligned_cols=201 Identities=25% Similarity=0.400 Sum_probs=171.6
Q ss_pred cEEEEeeeEeeCCCC-CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~-~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
.++++|+++.|+... .+++|+|+||++++||+++|+|++|||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 488999999996422 24799999999999999999999999999999999999999999999887
Q ss_pred ---eEEEEeCCCcCCC-CCHHHHHhcCCC---C----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 ---SIAYVSQTSWIQS-GSIRDNILYGKP---M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 ---~iayv~Q~~~lf~-~TIreNI~fg~~---~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
.++|++|++.+|+ .|+.||+.++.. . .+++..+.++.+++.+.++ ....+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~-----------~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-----------YQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhc-----------CCcccCCHHHHHH
Confidence 3899999999986 599999986421 1 1234555666666655443 3445899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHH
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
++||||+.++|+++||||||++||+++.+.+. +.++... +++|+|++||+++.+..||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~-~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVM-AILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999875 4565543 589999999999999899999999999999999999875
No 319
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=1.8e-32 Score=288.92 Aligned_cols=200 Identities=24% Similarity=0.394 Sum_probs=169.2
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------eE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~i 660 (1231)
.+.++++.+|.. -.+++|+||++++||.++++||+||||||++++|.|+|+|++|+|.++| .|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 568889988853 4699999999999999999999999999999999999999999999998 38
Q ss_pred EEEeCCCcCCCC-CHHHHHhcCCC-------------C--C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcC
Q 000905 661 AYVSQTSWIQSG-SIRDNILYGKP-------------M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1231)
Q Consensus 661 ayv~Q~~~lf~~-TIreNI~fg~~-------------~--~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~L 720 (1231)
+--+|.+-+|.+ |+-||++.|.. + + .++-.+.++.++|.+. -.+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~-----------a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL-----------ADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-----------hcchhhcC
Confidence 999999999965 99999987622 1 1 2333444555555443 33567789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchh-hccCeEEEEeCCeEe
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFL-SEVDRILVLEGGQIT 797 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~ 797 (1231)
|+||+.|+.||||+..+|++++||||.+++.+.-..++. +.|+... .|.|+++|-|+++.+ .-||+|+||+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~-~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 999999999999999999999999999999998888876 4566655 359999999999975 669999999999999
Q ss_pred EecChHHHHhcC
Q 000905 798 QSGNYQELLLAG 809 (1231)
Q Consensus 798 ~~Gt~~eL~~~~ 809 (1231)
.+|+++|+.++.
T Consensus 230 AeG~P~eV~~dp 241 (250)
T COG0411 230 AEGTPEEVRNNP 241 (250)
T ss_pred ccCCHHHHhcCH
Confidence 999999988653
No 320
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.98 E-value=3.8e-32 Score=363.83 Aligned_cols=203 Identities=22% Similarity=0.347 Sum_probs=173.0
Q ss_pred cEEEEeeeEeeCCC-CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc---CCCcEEEEcC---------eE
Q 000905 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG---------SI 660 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~-~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~---~~~G~I~v~g---------~i 660 (1231)
.++++|++++|+.+ .++++|+|+|+++++||++||+||||||||||+++|.|..+ +++|+|.++| .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999998632 24579999999999999999999999999999999999998 6889999998 38
Q ss_pred EEEeCCCc-CCCCCHHHHHhcCC----C--CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 661 AYVSQTSW-IQSGSIRDNILYGK----P--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 661 ayv~Q~~~-lf~~TIreNI~fg~----~--~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
|||+|++. +.+.|+|||+.|+. + .++ ++++++++..+|.+ -.++.||+.|.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHH
Confidence 99999865 56789999999852 1 222 34567777776643 3588999999999999999999
Q ss_pred HHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcch--hhccCeEEEEeCC-eEeEecChHH
Q 000905 730 LARAVYNDAD-IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF--LSEVDRILVLEGG-QITQSGNYQE 804 (1231)
Q Consensus 730 LARAly~~~~-IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~--l~~aD~Iivl~~G-~I~~~Gt~~e 804 (1231)
||||+.++|+ |++||||||+||++++.++. +.+++. .+|+|+|++||+++. ...+|+|++|++| ++++.|+.++
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~-~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSIC-KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 99999999999999999876 456554 468999999999986 3679999999987 9999999754
No 321
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=2.7e-32 Score=265.93 Aligned_cols=199 Identities=29% Similarity=0.430 Sum_probs=168.4
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
+|++++.+|.|.. ..+|.||+|+.+.||.+.+.||||+|||||++.|.=+--|.+|+..+.|
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 5889999999964 4699999999999999999999999999999999888889999998866
Q ss_pred ----eEEEEeCCCcCCC-CCHHHHHhc------CCCCC--HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 ----SIAYVSQTSWIQS-GSIRDNILY------GKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ----~iayv~Q~~~lf~-~TIreNI~f------g~~~~--~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.+|.|.|+-.|.. -|+-||+.= |-+-+ ..+-.+.++...|.+.-+.+| ..|||||.
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 4999999999985 599999863 22222 234455666777776666665 57999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~ 803 (1231)
||+|||||+.-+|+++++||||+|||++...++. ..|+++. .|-|-++|||.++..++ |.+++.|++|+|+|+|+++
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv-~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIV-SIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHH-HHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999988876 4566543 58999999999998765 8999999999999999987
Q ss_pred HHHh
Q 000905 804 ELLL 807 (1231)
Q Consensus 804 eL~~ 807 (1231)
-.-+
T Consensus 227 ~ft~ 230 (242)
T COG4161 227 CFTE 230 (242)
T ss_pred hccC
Confidence 6543
No 322
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=4e-32 Score=292.92 Aligned_cols=187 Identities=26% Similarity=0.384 Sum_probs=157.9
Q ss_pred cEEEEeeeEeeCCCC------CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-EEEEeCC
Q 000905 594 SVKIQEGNFSWDPEL------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQT 666 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~------~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~-iayv~Q~ 666 (1231)
-++++|++..|+... ...+++||||+|++||.+++||.|||||||+-++|+|+++|++|+|.++|+ +.-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 467888888886432 136899999999999999999999999999999999999999999999985 11111
Q ss_pred CcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHH-hcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000905 667 SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI-NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1231)
Q Consensus 667 ~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di-~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDe 745 (1231)
+.-..+++.+.++.++|.++. ...| ..|||||||||+||||+.-+|++++.||
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHHHhhCCcEEEecC
Confidence 222356799999999988754 3444 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhcC
Q 000905 746 PFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 746 p~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
|+||||.-+.++|.+ .+..+ ..|-|.++|||+++..++ +|+|.||..|+|+|.|+-+++.++.
T Consensus 136 pvSaLDvSiqaqIln-LL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 136 PVSALDVSVQAQILN-LLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred chhhcchhHHHHHHH-HHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 999999999999874 44332 358899999999999876 8999999999999999999998753
No 323
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.98 E-value=3.1e-32 Score=314.66 Aligned_cols=169 Identities=30% Similarity=0.417 Sum_probs=144.9
Q ss_pred EECcCCCChHHHHHHHhCCCcCCCcEEEEcC-----------eEEEEeCCCcCCCC-CHHHHHhcCCC---CC----HHH
Q 000905 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQSG-SIRDNILYGKP---MD----KAR 688 (1231)
Q Consensus 628 IvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-----------~iayv~Q~~~lf~~-TIreNI~fg~~---~~----~~~ 688 (1231)
|+||||||||||+++|.|+++|++|+|.++| .++|++|++.+|.. |++|||.|+.. .+ +++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 5899999999999999999999999999987 39999999999965 99999998742 22 245
Q ss_pred HHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-
Q 000905 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767 (1231)
Q Consensus 689 ~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l- 767 (1231)
++++++..++.+..+. ...+||||||||++||||+.++|+++|||||||+||+++.+.+. +.+....
T Consensus 81 ~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~ 148 (325)
T TIGR01187 81 VLEALRLVQLEEFADR-----------KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ-LELKTIQE 148 (325)
T ss_pred HHHHHHHcCCcchhcC-----------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHH
Confidence 6677777777654443 34689999999999999999999999999999999999999875 4565543
Q ss_pred -CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 768 -EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 768 -~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
.++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+.
T Consensus 149 ~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 149 QLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3899999999998764 5999999999999999999999865
No 324
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.98 E-value=6.7e-32 Score=359.86 Aligned_cols=205 Identities=19% Similarity=0.296 Sum_probs=175.1
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------e
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------S 659 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------~ 659 (1231)
+..|+++|+++.|+.+ .+++|+|+||+|++||+++|+|++|||||||+++|.|+.+|++|+|.++| .
T Consensus 1935 ~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 4569999999999642 35799999999999999999999999999999999999999999999988 3
Q ss_pred EEEEeCCCcCCC-CCHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 660 IAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 660 iayv~Q~~~lf~-~TIreNI~fg~---~~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
||||||++.++. -|++||+.+.. ..+ +++.+++++.++|.+..+ .+...||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 999999988875 69999997631 122 234556777888765433 33467999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhcC
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
||++.+|+|++|||||++||+.+.+.+.+ .++.. .+|+|+|++||+++.+. .||+|++|++|+++..|+.+++.++-
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~-lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWN-TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 99999999999999999999999999874 56554 36899999999999875 59999999999999999999997653
No 325
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.7e-32 Score=334.43 Aligned_cols=193 Identities=20% Similarity=0.376 Sum_probs=157.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|+++.|. .+|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 589999998752 389999999999999999999999999999999999999999999987 2
Q ss_pred EEEEeCCC---cCCC-CCHHHHHhcCCCC------------CH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCc
Q 000905 660 IAYVSQTS---WIQS-GSIRDNILYGKPM------------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1231)
Q Consensus 660 iayv~Q~~---~lf~-~TIreNI~fg~~~------------~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~ 719 (1231)
++||||++ .++. -|++||+.++... +. ++.+++++..++.. +- .......
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~----~~~~~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------HS----VNQNITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------CC----ccCcccc
Confidence 89999984 4554 5999999876321 11 22334444443320 11 2234457
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchh-hccCeEEEEeCCeEe
Q 000905 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRILVLEGGQIT 797 (1231)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~ 797 (1231)
||||||||++||||+..+|+|+|||||||+||+.+.+.+.+ .++.. .+|+|+|+|||+++.+ ..||+|++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999998764 56543 3589999999999876 569999999999999
Q ss_pred EecCh
Q 000905 798 QSGNY 802 (1231)
Q Consensus 798 ~~Gt~ 802 (1231)
+.|+.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88865
No 326
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=3.3e-32 Score=334.19 Aligned_cols=200 Identities=21% Similarity=0.285 Sum_probs=160.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-CCcEEEEcC--------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG-------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-~~G~I~v~g-------------- 658 (1231)
.++++|+++.|+.+.+.++|+|+||+|++||+++|+|++|||||||+++|.|+++| ++|+|.++|
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999988432234699999999999999999999999999999999999985 899999976
Q ss_pred eEEEEeCCC---cCC-CCCHHHHHhcCCC--------CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 659 SIAYVSQTS---WIQ-SGSIRDNILYGKP--------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 659 ~iayv~Q~~---~lf-~~TIreNI~fg~~--------~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
+++|++|++ .++ +.|++||+.++.. .+ +++.+++++.+++.++ ........|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA----------SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----------CccCccccCCH
Confidence 289999996 355 4699999988521 11 1234555555554211 11233457999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
|||||++||||+..+|+++||||||++||+.+.+.+.+ .+... .+|+|+|+|||+++.+. .||+|++|++|+++..+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99999999999999999999999999999999998764 55443 35899999999999875 59999999999999877
Q ss_pred ChHH
Q 000905 801 NYQE 804 (1231)
Q Consensus 801 t~~e 804 (1231)
+-++
T Consensus 486 ~~~~ 489 (500)
T TIGR02633 486 VNHA 489 (500)
T ss_pred cccc
Confidence 5443
No 327
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.8e-31 Score=310.37 Aligned_cols=195 Identities=27% Similarity=0.392 Sum_probs=165.1
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-------------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~------------- 659 (1231)
.-++++|++.+|+. .++|+|+||++.+||.+|++|.+|+|||||+|.|.|.|+|++|+|.++|.
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35789999999974 57999999999999999999999999999999999999999999999993
Q ss_pred -EEEEeCCCcCC-CCCHHHHHhcCCCC-------CHHHHHH----HHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 660 -IAYVSQTSWIQ-SGSIRDNILYGKPM-------DKARYDK----AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 660 -iayv~Q~~~lf-~~TIreNI~fg~~~-------~~~~~~~----vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
|+.|.||.-|+ +-||.|||-+|++. |..+.++ +++..++. ..-++.| .+||+||||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v----~~LsiaqrQ 152 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLV----GDLSIAQRQ 152 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhh----hhCCHHHHH
Confidence 99999999887 56999999998763 3343333 33333332 1234454 469999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchh-hccCeEEEEeCCeEeEecCh
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~ 802 (1231)
-|+||||+..+++|+|||||||||+.+-.+++|+ .++.+ .+|.++|+||||++.+ .-||+|.||.||+.+..++.
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999985 55554 4799999999999875 56999999999999987773
No 328
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=7.2e-32 Score=330.90 Aligned_cols=193 Identities=23% Similarity=0.419 Sum_probs=158.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|+++ ++|+|+||+|++||+++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 588999873 379999999999999999999999999999999999999999999987 2
Q ss_pred EEEEeCCC---cCC-CCCHHHHHhcCCC---------CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 660 IAYVSQTS---WIQ-SGSIRDNILYGKP---------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 660 iayv~Q~~---~lf-~~TIreNI~fg~~---------~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
|+|+||++ .++ +.|++||+.++.. .+ +++.+++++.+++.+ -.......+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT----------PSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC----------CCccCchhhCCH
Confidence 89999997 344 5799999987421 11 123444555544421 112345668999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
|||||++||||+..+|+++||||||++||+.+.+.+. +.++... +|+|+|++||+++.+. .||+|++|++|+++..|
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIY-QLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999876 4565543 5899999999999864 59999999999999999
Q ss_pred ChHHH
Q 000905 801 NYQEL 805 (1231)
Q Consensus 801 t~~eL 805 (1231)
+.+++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87765
No 329
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-31 Score=328.77 Aligned_cols=195 Identities=22% Similarity=0.346 Sum_probs=159.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|+++. .+++|+||+|++||+++|+||+|||||||+++|+|+++|++|+|.++| .
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5888998742 489999999999999999999999999999999999999999999986 2
Q ss_pred EEEEeCCC---cCC-CCCHHHHHhcCCC-C--------C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 660 IAYVSQTS---WIQ-SGSIRDNILYGKP-M--------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 660 iayv~Q~~---~lf-~~TIreNI~fg~~-~--------~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
++|+||++ .++ +.|+.||+.++.. . + +++.++.++.+++.++ .......+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTP----------SREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccC----------CccCccccCCH
Confidence 79999997 244 5799999987531 0 1 1234445555544211 12234558999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hccCeEEEEeCCeEeEec
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSG 800 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~G 800 (1231)
|||||++||||+..+|+++||||||++||..+.+.+. +++..+. .|+|+|+|||+++.+ +.||+|++|++|++++.|
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY-NVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHH-HHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999876 4565543 589999999999987 569999999999999999
Q ss_pred ChHHHH
Q 000905 801 NYQELL 806 (1231)
Q Consensus 801 t~~eL~ 806 (1231)
+.+|..
T Consensus 479 ~~~~~~ 484 (501)
T PRK11288 479 AREQAT 484 (501)
T ss_pred ccccCC
Confidence 988764
No 330
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=3.7e-31 Score=292.10 Aligned_cols=208 Identities=22% Similarity=0.405 Sum_probs=173.2
Q ss_pred CcEEEEeeeEeeCCCC--------CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------
Q 000905 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~--------~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------ 658 (1231)
.-++.+|+...|+-+. ...+.+++||+.++||.++|||.||||||||-.+|+|+.++. |+|..+|
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 4578888888776321 134789999999999999999999999999999999999987 9999988
Q ss_pred ----------eEEEEeCCCcC---CCCCHHHHHhcCCC-----C----CHHHHHHHHHHhcchHHHh-cCCCCCcccccC
Q 000905 659 ----------SIAYVSQTSWI---QSGSIRDNILYGKP-----M----DKARYDKAIKACALDKDIN-NFDHGDLTEIGQ 715 (1231)
Q Consensus 659 ----------~iayv~Q~~~l---f~~TIreNI~fg~~-----~----~~~~~~~vl~~~~L~~di~-~lp~G~~T~IGe 715 (1231)
++-.|+|||+= ...||.+-|.=|.. . -++++.+|++.++|++... ..|
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP--------- 424 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP--------- 424 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------
Confidence 48999999982 35688888865532 1 2467788888999987654 344
Q ss_pred CCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchhhc-cCeEEEEe
Q 000905 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLE 792 (1231)
Q Consensus 716 ~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l~~-aD~Iivl~ 792 (1231)
...|||||||||||||+.-+|.+++|||||||||--+..+|++ .++.+ ..+-+=++|||++..++. ||+|+||+
T Consensus 425 --hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 425 --HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred --cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 4689999999999999999999999999999999999999874 45433 347799999999999865 99999999
Q ss_pred CCeEeEecChHHHHhcC-chHH
Q 000905 793 GGQITQSGNYQELLLAG-TAFE 813 (1231)
Q Consensus 793 ~G~I~~~Gt~~eL~~~~-~~~~ 813 (1231)
+|+|+|+|+-+++.++. ..|.
T Consensus 502 ~GkiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 502 DGKIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred CCEEeeeCCHHHHhcCCCcHHH
Confidence 99999999999998764 3454
No 331
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=5.3e-31 Score=326.60 Aligned_cols=200 Identities=23% Similarity=0.355 Sum_probs=163.9
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCC-cC
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~-~l 669 (1231)
..++++|+++.|++ +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+++ .|||+||++ .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 35999999999953 4699999999999999999999999999999999999999999999966 599999997 55
Q ss_pred C-CCCHHHHHhcCCCC-----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEE
Q 000905 670 Q-SGSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1231)
Q Consensus 670 f-~~TIreNI~fg~~~-----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1231)
+ +.|++||+.++... ++++.+++++..++.++. ......+||||||||++||||+..+|+++||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5 45999999876421 233344555555553211 1234467999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeC-CeEe-EecChHHHHhc
Q 000905 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEG-GQIT-QSGNYQELLLA 808 (1231)
Q Consensus 744 Dep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~-G~I~-~~Gt~~eL~~~ 808 (1231)
||||++||+.+.+.+. +.+... + .|+|+|||+++.+. .||+|++|++ |++. ..|+++++++.
T Consensus 470 DEPt~~LD~~~~~~l~-~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALE-EALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHH-HHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999875 456554 4 49999999999875 4999999986 7876 48898887654
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=5.8e-31 Score=326.18 Aligned_cols=199 Identities=22% Similarity=0.366 Sum_probs=162.9
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCc-C
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-I 669 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~-l 669 (1231)
..++++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|.|+.+|++|+|.+++ .|+|++|++. +
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcccc
Confidence 35999999999953 4699999999999999999999999999999999999999999999966 5999999973 5
Q ss_pred C-CCCHHHHHhcCCC---CC--HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEE
Q 000905 670 Q-SGSIRDNILYGKP---MD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1231)
Q Consensus 670 f-~~TIreNI~fg~~---~~--~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1231)
+ +.|++||+.++.+ .+ +.+.+++++..++.++. ......+||||||||++||||+..+|+++||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 5 4699999998643 11 23344555555553211 1234567999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeC-CeEe-EecChHHHHh
Q 000905 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLL 807 (1231)
Q Consensus 744 Dep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~-G~I~-~~Gt~~eL~~ 807 (1231)
||||++||+.+.+.+. +.+... . .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.+
T Consensus 468 DEPt~~LD~~~~~~l~-~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 468 DEPTNDLDVETLRALE-EALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred eCCCCCCCHHHHHHHH-HHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999875 456554 3 499999999998764 999999987 5876 5688877654
No 333
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=6.9e-31 Score=329.66 Aligned_cols=198 Identities=24% Similarity=0.405 Sum_probs=165.0
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCC
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf 670 (1231)
..++++|++++|+++ +++|+|+||+|++|++++|+||+|||||||+++|+|+.+|++|+|.+++ +|+|++|++. .
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 468999999999532 3699999999999999999999999999999999999999999999886 5999999873 3
Q ss_pred CCCHHHHHhc--C---CCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000905 671 SGSIRDNILY--G---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1231)
Q Consensus 671 ~~TIreNI~f--g---~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDe 745 (1231)
..++.+|+.+ . ...++++++++++..++.++... ....+||||||||++||||++++|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~----------~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhc----------CCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4466666432 1 12457788889999888654321 3356899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEe-EecChHHHH
Q 000905 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1231)
Q Consensus 746 p~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~-~~Gt~~eL~ 806 (1231)
||++||+.+...+.+ .+... + .|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 654 PT~~LD~~s~~~l~~-~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 654 PSNHLDLDAVEALIQ-GLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCCCCHHHHHHHHH-HHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999888754 44443 3 499999999998864 9999999999998 678887753
No 334
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=3.6e-30 Score=344.82 Aligned_cols=189 Identities=21% Similarity=0.309 Sum_probs=157.7
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC----cCCCcEEEEcC------------eEEEEeCCCcCCC-C
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYG------------SIAYVSQTSWIQS-G 672 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~----~~~~G~I~v~g------------~iayv~Q~~~lf~-~ 672 (1231)
+++|+|+|+++++||+++|+||+|||||||+++|.|.. .|.+|+|.++| .++||+|++.++. .
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 56999999999999999999999999999999999986 46899999987 2899999987765 5
Q ss_pred CHHHHHhcCCC----------CCHHHH-----HHHHHHhcchHHHhcCCCCCcccccCC-CCcCChHHHHHHHHHHHHhc
Q 000905 673 SIRDNILYGKP----------MDKARY-----DKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYN 736 (1231)
Q Consensus 673 TIreNI~fg~~----------~~~~~~-----~~vl~~~~L~~di~~lp~G~~T~IGe~-G~~LSGGQkQRIaLARAly~ 736 (1231)
|++||+.|+.. .+++++ +.+++..+| .+-.+|.||++ ...||||||||++||||+..
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999998521 233332 223444444 34457888764 56899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcc--hhhccCeEEEEeCCeEeEecChHHHH
Q 000905 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVE--FLSEVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 737 ~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~--~l~~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
+|+|++||||||+||+.++..+. +.++... .|+|+|+++|+++ ....+|+|++|++|+++..|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999986 4666653 3899999999974 35679999999999999999999875
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.6e-31 Score=296.09 Aligned_cols=187 Identities=22% Similarity=0.314 Sum_probs=151.0
Q ss_pred EeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEE-----------EcC--------
Q 000905 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG-------- 658 (1231)
Q Consensus 598 ~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~-----------v~g-------- 658 (1231)
.|++++|++. +++|+|+| .+++||+++|+||+|||||||+++|+|+++|++|+|. ++|
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 3688889532 36999999 4999999999999999999999999999999999995 544
Q ss_pred -------eEEEEeCCCcCCCCCHHHHHhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHH
Q 000905 659 -------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 -------~iayv~Q~~~lf~~TIreNI~fg~~--~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
.++|++|++.+++.++.+||.+.-. -.+++..++++.+++.+. ...+..+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 2688889888777666666654311 134567777777766432 33566789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEec
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~G 800 (1231)
||||++++|+++||||||++||+++.+.+. +.++... +++|+|+|||+++.+. .||+|++|+ |++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~-~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAA-RLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999998875 4565543 4799999999999887 499999995 6666543
No 336
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.8e-31 Score=277.39 Aligned_cols=151 Identities=26% Similarity=0.326 Sum_probs=131.1
Q ss_pred EeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-eEEEEeCCCcCCCCCHHH
Q 000905 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRD 676 (1231)
Q Consensus 598 ~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-~iayv~Q~~~lf~~TIre 676 (1231)
.|+++.|.. +++++| ++++++||.++|+||+|||||||+++|.|+++|++|+|.++| .++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 578888853 468888 599999999999999999999999999999999999999999 5999999753
Q ss_pred HHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 000905 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756 (1231)
Q Consensus 677 NI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~ 756 (1231)
||||||||++||||+..+|++++|||||++||+++.+
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-C-CcEEEEEccCcchhh-ccCeEEEEeCCeEeEe--cChHH
Q 000905 757 TLFNECVMAAL-E-KKTVILVTHQVEFLS-EVDRILVLEGGQITQS--GNYQE 804 (1231)
Q Consensus 757 ~i~~~~i~~~l-~-~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~--Gt~~e 804 (1231)
.+.+ .+.... + ++|+|+|||+++.+. .||+|++|+++-.+.+ |.+..
T Consensus 109 ~l~~-~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 109 NAAR-AIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred HHHH-HHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 8764 555543 4 489999999999887 5999999998866533 54443
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=327.36 Aligned_cols=198 Identities=20% Similarity=0.405 Sum_probs=165.8
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCC--
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~-- 667 (1231)
...|+++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|+|.+++ ++||++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 346999999999953 4799999999999999999999999999999999999999999999974 699999985
Q ss_pred cCC-CCCHHHHHhc-CCCCCHHHHHHHHHHhcchH-HHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEe
Q 000905 668 WIQ-SGSIRDNILY-GKPMDKARYDKAIKACALDK-DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1231)
Q Consensus 668 ~lf-~~TIreNI~f-g~~~~~~~~~~vl~~~~L~~-di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLD 744 (1231)
.+. +.|+.+|+.- .....+++..++++..++.. +.. ....+||||||||++||||++++|+++|||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSgGekqRl~La~~l~~~p~lLlLD 455 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVT-----------EETRRFSGGEKARLVLALIVWQRPNLLLLD 455 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhc-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 343 3488888752 22234566777777777643 222 234579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEe-EecChHHHH
Q 000905 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQIT-QSGNYQELL 806 (1231)
Q Consensus 745 ep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~-~~Gt~~eL~ 806 (1231)
|||++||..+...+. +.+... . .|+|+|||+..++. .||+|++|++|+++ ..|+|++..
T Consensus 456 EPt~~LD~~~~~~l~-~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 456 EPTNHLDLDMRQALT-EALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCCHHHHHHHH-HHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999998865 566654 4 49999999999886 49999999999997 789999874
No 338
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=3e-31 Score=325.65 Aligned_cols=195 Identities=18% Similarity=0.368 Sum_probs=157.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------~ 659 (1231)
.++++|++. .+|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++| .
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 588999873 259999999999999999999999999999999999999999999987 2
Q ss_pred EEEEeCCC---cCCC-CCHHHHHhcC----CC--CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 660 IAYVSQTS---WIQS-GSIRDNILYG----KP--MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 660 iayv~Q~~---~lf~-~TIreNI~fg----~~--~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
|+|+||++ -++. .|+.||+... .. .. +++.+++++..++.. + ....+...||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------N----HAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------C----CccCccccCCcHHH
Confidence 89999986 2554 5999998532 01 11 123344444444420 1 12344567999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChH
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~ 803 (1231)
||++||||+..+|+++||||||++||+.+.+.+.+ .+.... +|+|+|+|||+++.+. .||+|++|++|+|+..|+.+
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999998764 555442 5899999999999875 59999999999999999888
Q ss_pred HHHh
Q 000905 804 ELLL 807 (1231)
Q Consensus 804 eL~~ 807 (1231)
++..
T Consensus 489 ~~~~ 492 (510)
T PRK15439 489 AINV 492 (510)
T ss_pred cCCH
Confidence 7653
No 339
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.3e-32 Score=272.72 Aligned_cols=199 Identities=29% Similarity=0.462 Sum_probs=171.6
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEE
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~ia 661 (1231)
|+++|++.+|.. +.+|+|+|++|++|++++++||+|+||||||+.+.|++++++|+|.++| .++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 678999999963 5899999999999999999999999999999999999999999999998 378
Q ss_pred EEeCCCcCCC-CCHHHHHhcCC-CC--------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH
Q 000905 662 YVSQTSWIQS-GSIRDNILYGK-PM--------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1231)
Q Consensus 662 yv~Q~~~lf~-~TIreNI~fg~-~~--------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA 731 (1231)
..-|+..+-. -||||=+.||+ || |+..++++++--.|.+ |.+.+. ..||||||||.=+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~----l~dryL-------d~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED----LSDRYL-------DELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc----hHHHhH-------Hhcccchhhhhhhh
Confidence 8889988764 59999999997 44 3456777877776643 333332 35999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhc
Q 000905 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 732 RAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
-.+.+|.|-++||||+.+||.+....+++ .++.+. -+||+|+|-|+..+.+ .+|+|+-|+||+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk-~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHH-HHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999988875 454432 3899999999999975 5899999999999999999999875
No 340
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=5.7e-31 Score=322.46 Aligned_cols=193 Identities=24% Similarity=0.401 Sum_probs=157.0
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-CCcEEEEcC-------------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG------------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-~~G~I~v~g------------- 658 (1231)
..++++|+++.|++ +++|+|+||++++||+++|+||+|||||||+++|.|+.++ ++|+|.++|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 45999999999953 3699999999999999999999999999999999998876 699999876
Q ss_pred -eEEEEeCCCcCC---CCCHHHHHhcCC--------CCC---HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChH
Q 000905 659 -SIAYVSQTSWIQ---SGSIRDNILYGK--------PMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1231)
Q Consensus 659 -~iayv~Q~~~lf---~~TIreNI~fg~--------~~~---~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGG 723 (1231)
.|+|++|++.++ ..|++||+.++. ... +++++++++.+++.++. ......+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT----------ADAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh----------ccCchhhCCHH
Confidence 289999998654 247887776431 011 24566777777765422 12345679999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEccCcchhhc--cCeEEEEeCCeEeEe
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EK-KTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~-kTvIlvTH~l~~l~~--aD~Iivl~~G~I~~~ 799 (1231)
||||++||||+..+|+++||||||++||+++.+.+. +.+.... ++ .|+|+|||+++.+.. ||++++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999999999999999999999999999876 4565543 34 469999999999864 799999999998874
No 341
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.4e-30 Score=321.70 Aligned_cols=192 Identities=22% Similarity=0.326 Sum_probs=163.2
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcC-CC
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~l-f~ 671 (1231)
..++++|+++.|++ ..|+++||+|++||.++|+|++|||||||+++|.|+.+|++|+|.++-.++|+||++.+ ++
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 35899999999953 35999999999999999999999999999999999999999999988789999999764 57
Q ss_pred CCHHHHHhcCCC-CC-HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000905 672 GSIRDNILYGKP-MD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1231)
Q Consensus 672 ~TIreNI~fg~~-~~-~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~Sa 749 (1231)
.|++||+.++.. ++ +...+++++..++.+..+ ....+||||||||++||||+.++|++|||||||++
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 799999987632 32 345677788888764333 33457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecC
Q 000905 750 VDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 750 lD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt 801 (1231)
||+.+...+. +.++... .++|+|+|||+++.+. .||+|++|++ ++...|+
T Consensus 484 LD~~~~~~l~-~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 484 LDVEQRLAVA-KAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999998875 5666553 3899999999999875 5999999965 8877776
No 342
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.6e-30 Score=272.45 Aligned_cols=149 Identities=26% Similarity=0.462 Sum_probs=123.1
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe--------EEEEeCCCcCCCCCHHHHHhc
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQSGSIRDNILY 680 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~--------iayv~Q~~~lf~~TIreNI~f 680 (1231)
..++|+|+||++++|++++|+||||||||||++++++ .+|++.++|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 4579999999999999999999999999999999974 6899988764 444444
Q ss_pred CCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHH
Q 000905 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATL 758 (1231)
Q Consensus 681 g~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~--~~IllLDep~SalD~~t~~~i 758 (1231)
.++++..++. +. ..+++..+||||||||++||||++++ |+++||||||++||+++.+.+
T Consensus 68 ---------~~~l~~~~L~---------~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGLG---------YL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCCC---------cc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 2344444432 11 24567889999999999999999999 999999999999999999987
Q ss_pred HHHHHHHhc-CCcEEEEEccCcchhhccCeEEEEeCCeE
Q 000905 759 FNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1231)
Q Consensus 759 ~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~I 796 (1231)
.+ .++... .++|+|+|||+++.+..||+|++|++|+.
T Consensus 129 ~~-~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 129 LE-VIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HH-HHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 64 565543 58999999999999999999999977544
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=3.3e-30 Score=323.78 Aligned_cols=199 Identities=24% Similarity=0.399 Sum_probs=162.5
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCC-cC
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~-~l 669 (1231)
..++++|++++|++ +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++. .|+|++|++ .+
T Consensus 318 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 318 IVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAEL 394 (635)
T ss_pred ceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCccccc
Confidence 35899999999953 4699999999999999999999999999999999999999999999954 599999986 35
Q ss_pred C-CCCHHHHHhcCCC-C--C--HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEE
Q 000905 670 Q-SGSIRDNILYGKP-M--D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1231)
Q Consensus 670 f-~~TIreNI~fg~~-~--~--~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1231)
+ +.|+.||+.++.+ . + ..+..+.++..++..+. ...+...||||||||++||||+.++|+++||
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred CCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 4599999987642 1 2 33445555555553221 1123457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEe-CCeEeE-ecChHHHHh
Q 000905 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLE-GGQITQ-SGNYQELLL 807 (1231)
Q Consensus 744 Dep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~-~G~I~~-~Gt~~eL~~ 807 (1231)
||||++||..+...+. +.+... +.|+|+|||+.+++. .||+|++|+ +|++.+ .|+|++.++
T Consensus 465 DEPt~~LD~~~~~~l~-~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 465 DEPTNDLDVETLELLE-ELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred cCCCCCCCHHHHHHHH-HHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999987654 556554 459999999999875 599999998 899876 688888753
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=321.47 Aligned_cols=197 Identities=23% Similarity=0.369 Sum_probs=156.7
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCCC
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~~ 672 (1231)
|.++|++++|+. +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++| .++|++|++..+..
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 689999999953 4799999999999999999999999999999999999999999999988 58999997655566
Q ss_pred CHHHHHhcCCC-C---------------------------------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCC
Q 000905 673 SIRDNILYGKP-M---------------------------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1231)
Q Consensus 673 TIreNI~fg~~-~---------------------------------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~ 718 (1231)
|+.+++.-+.. + .++++.++++..++.+ ........
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~ 148 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN----------EQLERPVS 148 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc----------hhhcCchh
Confidence 77666542110 0 0112222333332211 11223456
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-ccCeEEEEeCCeEe
Q 000905 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1231)
Q Consensus 719 ~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~ 797 (1231)
+||||||||++||||+..+||++||||||++||+.+...+. +.+... +.|+|+|||+..++. .||+|++|++|++.
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~-~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLE-KWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHH-HHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 79999999999999999999999999999999999998764 455543 579999999999986 48999999999996
Q ss_pred -EecChHHHHh
Q 000905 798 -QSGNYQELLL 807 (1231)
Q Consensus 798 -~~Gt~~eL~~ 807 (1231)
..|+|++...
T Consensus 226 ~~~g~~~~~~~ 236 (638)
T PRK10636 226 EYTGNYSSFEV 236 (638)
T ss_pred EecCCHHHHHH
Confidence 5799988764
No 345
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-30 Score=316.78 Aligned_cols=196 Identities=21% Similarity=0.355 Sum_probs=155.0
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-------------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~------------- 659 (1231)
..|+++|+++.+ +++|+|+||++++||+++|+|++|||||||+++|.|+.+|++|+|.++|.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 358999999873 25899999999999999999999999999999999999999999999871
Q ss_pred -EEEEeCCCc---CCC-CCHHHHHhcC-----CC----CCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCC
Q 000905 660 -IAYVSQTSW---IQS-GSIRDNILYG-----KP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1231)
Q Consensus 660 -iayv~Q~~~---lf~-~TIreNI~fg-----~~----~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LS 721 (1231)
++|+||++. +|. .|+.+|+.+. .+ .+. ++.++.++..++. .+ .......+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~~-~~~~~~~~LS 393 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK---------TP-GHRTQIGSLS 393 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc---------CC-CcccccccCC
Confidence 899999853 444 5777774322 11 121 1223333333321 10 1245567899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEe
Q 000905 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQS 799 (1231)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~ 799 (1231)
||||||++||||+.++|+|+||||||++||+.+.+.+.+ .+..+ .+++|+|+|||+++.+. .||++++|++|+++..
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH-HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999998864 55543 36899999999999864 6999999999999988
Q ss_pred cChHH
Q 000905 800 GNYQE 804 (1231)
Q Consensus 800 Gt~~e 804 (1231)
++.++
T Consensus 473 ~~~~~ 477 (491)
T PRK10982 473 VDTKT 477 (491)
T ss_pred Ecccc
Confidence 76543
No 346
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=3.4e-30 Score=294.41 Aligned_cols=192 Identities=26% Similarity=0.427 Sum_probs=166.2
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-------------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~------------- 659 (1231)
..+++++++..|+ ...+++||||+|++||..|+.|.+|+|||||++.|.|+|+|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999997 357899999999999999999999999999999999999999999999993
Q ss_pred -EEEEeCCCcCCCC-CHHHHHhcCCCC------C----HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 660 -IAYVSQTSWIQSG-SIRDNILYGKPM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 660 -iayv~Q~~~lf~~-TIreNI~fg~~~------~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
||.|.|++-|++. |+.|||..|.+- + .+++++..+..+|.=|.+ ++-..||-|+|||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 9999999999865 999999999862 2 356666666666654433 4455799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEe
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQS 799 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~ 799 (1231)
|.|-+|||++|+++|||||||-|-|.-.+++|+ .++.+ ..|||+|+|||++..+. -||++-||.+|+++..
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 999999999999999999999999999999885 45443 47999999999998765 5999999999998654
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=8.1e-30 Score=339.90 Aligned_cols=203 Identities=25% Similarity=0.385 Sum_probs=168.9
Q ss_pred cEEEEeeeEeeCCC----------CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCc--CCCcEEEEcC---
Q 000905 594 SVKIQEGNFSWDPE----------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG--- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~----------~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~--~~~G~I~v~g--- 658 (1231)
.+.++|+++..+.. +.+.+|+|+|+++++|+++||+||||||||||+++|.|..+ +.+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58999999987521 22469999999999999999999999999999999999976 3789999988
Q ss_pred -------eEEEEeCCCcCCC-CCHHHHHhcCC------CCCH----HHHHHHHHHhcchHHHhcCCCCCcccccCCC-Cc
Q 000905 659 -------SIAYVSQTSWIQS-GSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG-LN 719 (1231)
Q Consensus 659 -------~iayv~Q~~~lf~-~TIreNI~fg~------~~~~----~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G-~~ 719 (1231)
.+|||+|++.++. .|++||+.|+. ..++ ++++++++..+|.+. .++.+|..| ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCCCC
Confidence 2899999987654 69999998752 1222 236678888877542 356777655 57
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcch--hhccCeEEEEeC-Ce
Q 000905 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF--LSEVDRILVLEG-GQ 795 (1231)
Q Consensus 720 LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~--l~~aD~Iivl~~-G~ 795 (1231)
||||||||++||||+..+|+|++||||||+||++++.++.+ .+++. .+|+|+|++||+++. ...+|++++|++ |+
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~-~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 99999999999999999999999999999999999998764 55544 368999999999984 578999999986 89
Q ss_pred EeEecChHH
Q 000905 796 ITQSGNYQE 804 (1231)
Q Consensus 796 I~~~Gt~~e 804 (1231)
++..|+..+
T Consensus 1099 ~v~~G~~~~ 1107 (1470)
T PLN03140 1099 VIYSGPLGR 1107 (1470)
T ss_pred EEEECCccc
Confidence 999998754
No 348
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=2.2e-29 Score=316.27 Aligned_cols=196 Identities=25% Similarity=0.391 Sum_probs=156.1
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe--EEEEeCCCcC-C
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWI-Q 670 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~--iayv~Q~~~l-f 670 (1231)
.|+++|++++|+. +++|+|+||+|++|++++|+||+|||||||+++|.|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 3789999999953 47999999999999999999999999999999999999999999999884 7999998643 3
Q ss_pred CCCHHHHHhcCCC-------------------C----------------------CHHHHHHHHHHhcchHHHhcCCCCC
Q 000905 671 SGSIRDNILYGKP-------------------M----------------------DKARYDKAIKACALDKDINNFDHGD 709 (1231)
Q Consensus 671 ~~TIreNI~fg~~-------------------~----------------------~~~~~~~vl~~~~L~~di~~lp~G~ 709 (1231)
.+++.+++..+.. . .++++.++++..++
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl----------- 148 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL----------- 148 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC-----------
Confidence 4688887643210 0 01112222222221
Q ss_pred cccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeE
Q 000905 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRI 788 (1231)
Q Consensus 710 ~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~I 788 (1231)
. .......|||||||||+||||+..+|+++||||||++||+++.+.+. +.+... +.|+|+|||+..++.. ||+|
T Consensus 149 ~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~-~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 149 D--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLE-GFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred C--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHH-HHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 1 12345689999999999999999999999999999999999998865 456554 3699999999999865 8999
Q ss_pred EEEeCCeEeE-ecChHHHHhc
Q 000905 789 LVLEGGQITQ-SGNYQELLLA 808 (1231)
Q Consensus 789 ivl~~G~I~~-~Gt~~eL~~~ 808 (1231)
++|++|+++. .|+|++.++.
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred EEEECCEEEEecCCHHHHHHH
Confidence 9999999974 6999887653
No 349
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3.7e-29 Score=264.40 Aligned_cols=188 Identities=27% Similarity=0.371 Sum_probs=161.6
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCC--cCCCCCHHHHHhc-----C
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS--WIQSGSIRDNILY-----G 681 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~--~lf~~TIreNI~f-----g 681 (1231)
..++|+||||++++||.++|+|++|||||||+++|.|-++|++|+|.++|+|++.---. +-.+.|-||||.+ |
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 35799999999999999999999999999999999999999999999999988654433 3345699999975 2
Q ss_pred C--CCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 000905 682 K--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759 (1231)
Q Consensus 682 ~--~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~ 759 (1231)
- ..-+++++++++-+.|.++++. .-.+.|-|.+.|++.|=|.-.+|||||+||.+|..|+.=.++=.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~-----------PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQ-----------PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhC-----------chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 2 2357889999999999988762 35689999999999999999999999999999999998766533
Q ss_pred HHHHHHh-cCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhc
Q 000905 760 NECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 760 ~~~i~~~-l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
++ +.+. .+++|+|+|||+++.+++ ||++++|++|+|...|+.+|..+.
T Consensus 188 ~r-l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 188 ER-LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred HH-HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 32 3344 688999999999999865 999999999999999999999853
No 350
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.3e-29 Score=258.98 Aligned_cols=141 Identities=40% Similarity=0.624 Sum_probs=126.4
Q ss_pred EEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-------------EEEE
Q 000905 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYV 663 (1231)
Q Consensus 597 ~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~-------------iayv 663 (1231)
++|++|.|+. +++++|+||++++|+.++|+|++|||||||+++|.|+++|.+|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6889999963 36999999999999999999999999999999999999999999999883 5666
Q ss_pred eCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEE
Q 000905 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1231)
Q Consensus 664 ~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllL 743 (1231)
+| ||||||||++||||+..+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-cCeEEEEeCCe
Q 000905 744 DDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1231)
Q Consensus 744 Dep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~-aD~Iivl~~G~ 795 (1231)
||||++||.++...+. +.+.... +++|+|++||+++.++. ||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999988765 4565443 36899999999999888 59999999985
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=6.8e-29 Score=239.75 Aligned_cols=184 Identities=23% Similarity=0.355 Sum_probs=153.2
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC---CcEEEEcC-----------e
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG-----------S 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~---~G~I~v~g-----------~ 659 (1231)
...++|++..-+. +-.|.|+|++|.+||++-+.||||||||||++-+.|.+.+. +|++.+++ +
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ 78 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence 3568899977653 46899999999999999999999999999999999999875 79999987 5
Q ss_pred EEEEeCCCcCCCC-CHHHHHhcCCCCC------HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHH
Q 000905 660 IAYVSQTSWIQSG-SIRDNILYGKPMD------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1231)
Q Consensus 660 iayv~Q~~~lf~~-TIreNI~fg~~~~------~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLAR 732 (1231)
+|...||+|||.- +|-+||+|.-|.+ ......+++..+|+..+.+.| .+||||||.||+|-|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R 147 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALLR 147 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHHH
Confidence 9999999999975 9999999987743 234567888888888887766 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhccCeEEEE
Q 000905 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVL 791 (1231)
Q Consensus 733 Aly~~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~Iivl 791 (1231)
++++.|+.++||||+|.||..-..+.-+-++.+. ..|--+|+|||+.+-.+.-.+|+-|
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999988776433334333 3588899999999888754454443
No 352
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.3e-29 Score=257.96 Aligned_cols=189 Identities=29% Similarity=0.390 Sum_probs=157.0
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEEEEeCCCcC---CCC
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI---QSG 672 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~iayv~Q~~~l---f~~ 672 (1231)
++++|+++|++|++|+++.|+|.+|+|||||+++|.|..+|++|+|.++| .++-|.|+|-- -+-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46899999999999999999999999999999999999999999999998 38889999974 366
Q ss_pred CHHHHHhcCC----C--CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000905 673 SIRDNILYGK----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1231)
Q Consensus 673 TIreNI~fg~----~--~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep 746 (1231)
||.||+.... . +.... ..-+...-.+-+..+|.|++-.++.+-.-|||||||-++|+-|.++.|+|++|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~l--n~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSAL--NERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhh--hHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999998642 1 22110 01112223445778899999999999889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcch-hhccCeEEEEeCCeEeEe
Q 000905 747 FSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF-LSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 747 ~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~~ 799 (1231)
|+||||+++..+++..-+-. -.+-|.++|||+++. +..-+|.|+|++|+|+-.
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999998876432211 245699999999975 778899999999999864
No 353
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=296.18 Aligned_cols=207 Identities=28% Similarity=0.428 Sum_probs=165.5
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCCC
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf~ 671 (1231)
.|.++|++++|+ ++++++|+|+++.+|+++++||++|+|||||+++|.|+..|++|+|...+ +|+|++|++...+
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 478999999994 35899999999999999999999999999999999999999999999987 7999999999986
Q ss_pred C-CHHHHHhcCCCC---CHHHHHHHHHH-------------------------hcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 672 G-SIRDNILYGKPM---DKARYDKAIKA-------------------------CALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 672 ~-TIreNI~fg~~~---~~~~~~~vl~~-------------------------~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
. |++|.+.-|... -..+++++... ......+..|. ...+ ...-.+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg--~~~~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLG--FPDE-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCC--CCcc-cCchhhcCH
Confidence 5 999999887531 11222222110 11122222222 2111 233457999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEe-Eec
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSG 800 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~-~~G 800 (1231)
|||-|++|||||..+||+|||||||.+||.++-..+ ++-+. ..+| |+|+|||+-++|.. |++|+-+++|++. ..|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WL-e~~L~-~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL-EDYLK-RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHH-HHHHH-hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 999999999999999999999999999999999886 33343 4567 99999999999976 8999999999875 678
Q ss_pred ChHHHHhcC
Q 000905 801 NYQELLLAG 809 (1231)
Q Consensus 801 t~~eL~~~~ 809 (1231)
+|+..++..
T Consensus 234 ny~~~~~~r 242 (530)
T COG0488 234 NYSSYLEQK 242 (530)
T ss_pred CHHHHHHHH
Confidence 999887654
No 354
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.2e-28 Score=245.22 Aligned_cols=189 Identities=24% Similarity=0.364 Sum_probs=155.9
Q ss_pred CceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEEEEeCCCc-CCC-----
Q 000905 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSW-IQS----- 671 (1231)
Q Consensus 611 ~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~iayv~Q~~~-lf~----- 671 (1231)
.+.+.|||+.++|+.+||+|.+|||||||.+.|.|..+|++|+|.+|| +|-.+.|||- -||
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 478899999999999999999999999999999999999999999998 4999999984 233
Q ss_pred CCH-----HHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000905 672 GSI-----RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1231)
Q Consensus 672 ~TI-----reNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep 746 (1231)
|+| |-|=-+..+...+++.+.++.++|.+|-..+ ....||-||||||||||||.-+|+|+|-||+
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 222 2121122222346788889999987765543 3467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH-HhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhcC
Q 000905 747 FSAVDAHTAATLFNECVM-AALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 747 ~SalD~~t~~~i~~~~i~-~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~~ 809 (1231)
+.+||+.+..++.+-.+. ....|-.-|.|++++-.+++ +|+|+||++|+++|.|+..|+.+..
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 999999999998753332 22358899999999999876 8999999999999999999998753
No 355
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=256.47 Aligned_cols=206 Identities=23% Similarity=0.398 Sum_probs=172.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------eEEEEe
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVS 664 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g---------~iayv~ 664 (1231)
.+++++++.+|. +..+++|+||++++|+..+++|++|+||||.+++|+|+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 478999999995 35799999999999999999999999999999999999999999999999 799999
Q ss_pred CCCcCCC-CCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE
Q 000905 665 QTSWIQS-GSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1231)
Q Consensus 665 Q~~~lf~-~TIreNI~fg~~---~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 740 (1231)
.+--|+. .|+.|-+.|-.. ++.++.++- +..+++.+.-+. .-..+-..||-|..|+|.+--|+.++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~--~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVG--KKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhccccc--cccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 9998874 699999987432 454444332 233455443221 12356678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecChHHHHhcCc
Q 000905 741 YLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810 (1231)
Q Consensus 741 llLDep~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~~eL~~~~~ 810 (1231)
+|||||||+|||-..+.+ ++.+.. .-+|+|+|+.||+++.+. -||++++|++|+.+-.|+-+++.++.|
T Consensus 152 lILDEPFSGLDPVN~elL-k~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 152 LILDEPFSGLDPVNVELL-KDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred EEecCCccCCChhhHHHH-HHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999988765 455544 457999999999999875 499999999999999999999887543
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=7.4e-29 Score=330.71 Aligned_cols=197 Identities=24% Similarity=0.380 Sum_probs=159.7
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC---CcEEEEcC----------eEEEEeCCCcCC-CCCHH
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG----------SIAYVSQTSWIQ-SGSIR 675 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~---~G~I~v~g----------~iayv~Q~~~lf-~~TIr 675 (1231)
+++|+|+|+.++|||+++|+||+||||||||++|.|.++|+ +|+|.++| .++||+|++.++ +.|++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46899999999999999999999999999999999999998 99999987 389999997666 56999
Q ss_pred HHHhcCCC-------CC-------HH---------HHHHHHHHhcc---------hHHHh--cCCCCCcccccCCC-CcC
Q 000905 676 DNILYGKP-------MD-------KA---------RYDKAIKACAL---------DKDIN--NFDHGDLTEIGQRG-LNL 720 (1231)
Q Consensus 676 eNI~fg~~-------~~-------~~---------~~~~vl~~~~L---------~~di~--~lp~G~~T~IGe~G-~~L 720 (1231)
||+.|+.. ++ ++ +++...+++.. +.-++ .|.+-.+|.||++. ..|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99998521 10 11 11111122111 11222 34556688998754 589
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcc--hhhccCeEEEEeCCeE
Q 000905 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVE--FLSEVDRILVLEGGQI 796 (1231)
Q Consensus 721 SGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~--~l~~aD~Iivl~~G~I 796 (1231)
|||||||++||||++.+|++++|||||++||+.+..++. ++++... .|+|+|+++|+++ ....+|+|++|++|++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999999999987 4666553 4899999999974 4678999999999999
Q ss_pred eEecChHHHHh
Q 000905 797 TQSGNYQELLL 807 (1231)
Q Consensus 797 ~~~Gt~~eL~~ 807 (1231)
+..|+.+++.+
T Consensus 417 vy~G~~~~~~~ 427 (1470)
T PLN03140 417 VYQGPRDHILE 427 (1470)
T ss_pred EEeCCHHHHHH
Confidence 99999999863
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.3e-28 Score=304.01 Aligned_cols=180 Identities=24% Similarity=0.376 Sum_probs=149.6
Q ss_pred EeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEE-----------EcC--------
Q 000905 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG-------- 658 (1231)
Q Consensus 598 ~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~-----------v~g-------- 658 (1231)
++++.+|.++ ..+|++++ .+++||.++|+||+|||||||+++|.|+++|++|+|. ++|
T Consensus 77 ~~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 3478888642 36999999 9999999999999999999999999999999999996 655
Q ss_pred -------eEE----EEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH
Q 000905 659 -------SIA----YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1231)
Q Consensus 659 -------~ia----yv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR 727 (1231)
.++ |++|.|.+|.+|++||+.... ..++.+++++..+|....+ ..-.+||||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qr 220 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILD-----------RDISELSGGELQR 220 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHH
Confidence 134 555677888999999997531 3456788888887754332 2345799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCC
Q 000905 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1231)
Q Consensus 728 IaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G 794 (1231)
++||||+.++|++||||||||+||++...++. +.++.+.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~-~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVA-RLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999876 466665459999999999998755 8999999874
No 358
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.5e-28 Score=254.41 Aligned_cols=195 Identities=23% Similarity=0.390 Sum_probs=157.1
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
+.-|+++|+++.|. ++++|+|||.+|++||.-+|+|++||||||||+++.|+++|++|.+.+-|
T Consensus 29 ~~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 29 EPLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred cceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 34699999999996 36899999999999999999999999999999999999999999998766
Q ss_pred -eEEEEeCC---CcCCCCCHHHHHhcC---------CCCCHHHHHH---HHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 659 -SIAYVSQT---SWIQSGSIRDNILYG---------KPMDKARYDK---AIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 659 -~iayv~Q~---~~lf~~TIreNI~fg---------~~~~~~~~~~---vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
+||||+-+ -+.-+.+++|=++=| +++|++++.+ .++.+++.+ ..+..=..||-
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----------la~r~~~~LS~ 174 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----------LADRPFGSLSQ 174 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----------hccCchhhcCH
Confidence 48998743 223366788877632 2456655544 445555543 22234467999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc---CCcEEEEEccCcchhh-ccCeEEEEeCCeEeE
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL---EKKTVILVTHQVEFLS-EVDRILVLEGGQITQ 798 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l---~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~ 798 (1231)
|||||+-||||+..+|.++|||||+++||......+.+ .+.+.. .+.|+|+|||+.+.++ ..++++.+++|+++.
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~-~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLN-RLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 99999999999999999999999999999998877654 344432 3789999999998765 569999999999999
Q ss_pred ecC
Q 000905 799 SGN 801 (1231)
Q Consensus 799 ~Gt 801 (1231)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
No 359
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=7.2e-28 Score=298.02 Aligned_cols=207 Identities=27% Similarity=0.426 Sum_probs=177.1
Q ss_pred CcEEEEeeeEeeCCC--CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC---CCcEEEEcC---------
Q 000905 593 RSVKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG--------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~--~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~---~~G~I~v~g--------- 658 (1231)
..++++|.+..-+.. ..+.+|+|||.++++||+.||.||||||||||+++|.|-.+. .+|+|.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 457888888876543 246899999999999999999999999999999999999874 799999999
Q ss_pred -eEEEEeCCCcCCC-CCHHHHHhcCCC------CC----HHHHHHHHHHhcchHHHhcCCCCCcccccCC-CCcCChHHH
Q 000905 659 -SIAYVSQTSWIQS-GSIRDNILYGKP------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQK 725 (1231)
Q Consensus 659 -~iayv~Q~~~lf~-~TIreNI~fg~~------~~----~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~-G~~LSGGQk 725 (1231)
..|||+||..++. -||||++.|... .+ +++++++++.-+|. +. .||.||.. +..+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~------~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KC------ADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hh------ccceecCCCCCccccchh
Confidence 3999999988765 599999988531 22 46778888888776 33 47888743 358999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcch--hhccCeEEEEeCCeEeEecCh
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~--l~~aD~Iivl~~G~I~~~Gt~ 802 (1231)
+|+++|--+..||+|++||||||+||+.++.++++ .+++ +.+|||||+.=|+++. .+..|++++|.+|+++..|+.
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 99999999999999999999999999999999885 5554 4579999999999974 688999999999999999999
Q ss_pred HHHHh
Q 000905 803 QELLL 807 (1231)
Q Consensus 803 ~eL~~ 807 (1231)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 98764
No 360
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.95 E-value=3.1e-27 Score=261.20 Aligned_cols=214 Identities=22% Similarity=0.421 Sum_probs=170.1
Q ss_pred CcEEEEeeeEeeCC-CCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-----CCcEEEEcC--------
Q 000905 593 RSVKIQEGNFSWDP-ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~-~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-----~~G~I~v~g-------- 658 (1231)
.-++++|.+.++.. +....+++||||+|++||++|+||.||||||--..+++|+++. -+|+|..+|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 34778888877752 2346799999999999999999999999999999999999986 478999887
Q ss_pred ---------eEEEEeCCCcC-CC--CCHHHH----HhcCCCC----CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCC
Q 000905 659 ---------SIAYVSQTSWI-QS--GSIRDN----ILYGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1231)
Q Consensus 659 ---------~iayv~Q~~~l-f~--~TIreN----I~fg~~~----~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~ 718 (1231)
+|+.++|||.- .| -||-.- |..-+.. -+++..+.++.+++.+-=. .+..-..
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCc
Confidence 59999999963 23 254444 4443332 3566777777777754211 1223346
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchhhc-cCeEEEEeCCe
Q 000905 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1231)
Q Consensus 719 ~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~ 795 (1231)
.|||||||||-||-||..+||++|=||||.|||..+..+|.+ .++++ ..|..+++|||++..+++ ||+|.||.+|+
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 799999999999999999999999999999999999999874 55543 248999999999999865 89999999999
Q ss_pred EeEecChHHHHhcC-chHHHH
Q 000905 796 ITQSGNYQELLLAG-TAFEQL 815 (1231)
Q Consensus 796 I~~~Gt~~eL~~~~-~~~~~l 815 (1231)
|+|+|+-+++.+.. -.|.+.
T Consensus 236 ivE~~~t~~lF~~PqHpYTr~ 256 (534)
T COG4172 236 IVETGTTETLFAAPQHPYTRK 256 (534)
T ss_pred EeecCcHHHHhhCCCChHHHH
Confidence 99999999998764 346543
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=7e-27 Score=293.61 Aligned_cols=205 Identities=22% Similarity=0.310 Sum_probs=148.2
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCC
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~ 672 (1231)
..|+++|++++|++ +++|+|+||+|++|++++|||++|||||||+++|.|+.. .| +--+|+|+|++|++.-.+-
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCC
Confidence 45999999999953 469999999999999999999999999999999999741 13 2234678889998644444
Q ss_pred CHHHHHhcC-------------------------------------CCCC--HHHHHHHHHHhcch----------HHHh
Q 000905 673 SIRDNILYG-------------------------------------KPMD--KARYDKAIKACALD----------KDIN 703 (1231)
Q Consensus 673 TIreNI~fg-------------------------------------~~~~--~~~~~~vl~~~~L~----------~di~ 703 (1231)
|+.|.+.-. .+.+ .+++.++.+..++. +-+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 554332210 0001 02233333322221 1111
Q ss_pred cCCCCCc-ccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 000905 704 NFDHGDL-TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782 (1231)
Q Consensus 704 ~lp~G~~-T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l 782 (1231)
.+ |.. ......-.+||||||||++||||+..+|+++||||||++||+.....+. +.++.. ++|+|+|||+..++
T Consensus 330 ~l--gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~~tviivsHd~~~l 404 (718)
T PLN03073 330 GL--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE-TYLLKW--PKTFIVVSHAREFL 404 (718)
T ss_pred HC--CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH-HHHHHc--CCEEEEEECCHHHH
Confidence 11 111 0111234579999999999999999999999999999999999998875 455554 78999999999998
Q ss_pred hc-cCeEEEEeCCeEe-EecChHHHHhc
Q 000905 783 SE-VDRILVLEGGQIT-QSGNYQELLLA 808 (1231)
Q Consensus 783 ~~-aD~Iivl~~G~I~-~~Gt~~eL~~~ 808 (1231)
.. ||+|++|++|++. ..|+|++..+.
T Consensus 405 ~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 432 (718)
T PLN03073 405 NTVVTDILHLHGQKLVTYKGDYDTFERT 432 (718)
T ss_pred HHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 76 9999999999996 68998876643
No 362
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=4.1e-27 Score=258.55 Aligned_cols=179 Identities=22% Similarity=0.301 Sum_probs=122.6
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHH-HHHhC--------------------CCcCCCcEEEEcC-eEEEEeCC
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL-YAILG--------------------EIPKISGTVNLYG-SIAYVSQT 666 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl-~~Llg--------------------~~~~~~G~I~v~g-~iayv~Q~ 666 (1231)
+.++|+|+||+|++||.++|+|+||||||||+ ..+.. .+.|..++ +.| ..++..|+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 84 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQ 84 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecC
Confidence 45799999999999999999999999999996 22221 11122222 122 23444444
Q ss_pred Cc-CCC--CCHH---HHHhc-CCCCC---HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhc
Q 000905 667 SW-IQS--GSIR---DNILY-GKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1231)
Q Consensus 667 ~~-lf~--~TIr---eNI~f-g~~~~---~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~ 736 (1231)
+. ..+ .++. +...+ ..-+. .++..+.++.+++.+. .......+||||||||++||||+++
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 85 KTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHHHHh
Confidence 43 111 1222 21111 10011 1111233444433211 2345677899999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhccCeEEEE------eCCeEeEec
Q 000905 737 DA--DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVL------EGGQITQSG 800 (1231)
Q Consensus 737 ~~--~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~Iivl------~~G~I~~~G 800 (1231)
+| +++||||||++||+.+.+.+.+ .+... .+|+|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~-~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIE-TLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999998764 45443 3689999999999999999999999 999999987
No 363
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.9e-27 Score=238.74 Aligned_cols=199 Identities=23% Similarity=0.384 Sum_probs=171.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
.++++|++.+++. -.+|+|+||++.+||+-+|+||+|+||||++..|.|-.+|++|++.++|
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4788999999864 3699999999999999999999999999999999999999999999998
Q ss_pred eEEEEeCCCcCCCC-CHHHHHhcCCC---------------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 659 SIAYVSQTSWIQSG-SIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 659 ~iayv~Q~~~lf~~-TIreNI~fg~~---------------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
.|+--.|.|-+|.. ||+||+-.... ..++++++++...+|.+--. .-..+||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhcc
Confidence 28888999999965 99999965321 12457888888888764322 33568999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEec
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAV-DAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~Sal-D~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~G 800 (1231)
||||++-|+--+.++|++++||||.+++ |++|++. .+.++.+.+++++++|-|++.+++. ||+|-||..|.+..+|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~t--aeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT--AELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHH--HHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 9999999999999999999999999999 7888774 4667777789999999999999865 9999999999999999
Q ss_pred ChHHHHhc
Q 000905 801 NYQELLLA 808 (1231)
Q Consensus 801 t~~eL~~~ 808 (1231)
+.+|+.++
T Consensus 229 sld~v~~d 236 (249)
T COG4674 229 SLDEVQND 236 (249)
T ss_pred cHHHhhcC
Confidence 99998643
No 364
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=1.6e-27 Score=241.21 Aligned_cols=123 Identities=38% Similarity=0.622 Sum_probs=113.6
Q ss_pred eeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEEEEeCCCcCCCCC-HHHHH
Q 000905 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGS-IRDNI 678 (1231)
Q Consensus 613 L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~iayv~Q~~~lf~~T-IreNI 678 (1231)
|+|+|++|++|++++|+|++|||||||+++|.|.++|.+|+|.++| .++|++|++.++++. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7999999999999999999999999999999999999999999987 499999999998875 9999
Q ss_pred hcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000905 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1231)
Q Consensus 679 ~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~S 748 (1231)
..+++++++++.+++.+ ..++.++.++..||||||||++||||++++|+++||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 45678899999988765 45677888899999999999999999999999999999996
No 365
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.94 E-value=7.7e-23 Score=232.29 Aligned_cols=488 Identities=17% Similarity=0.198 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 284 ICALLRTIAVVVGPLLLYAFVNYSNRGE--ENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1231)
Q Consensus 284 ~~~l~~~~~~~~~P~ll~~li~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~i~~K~ 361 (1231)
++.+..+.+.+...-+=++++..+...+ +..+...-|++ .++-.++.+....+...+++..+|..|....|++-
T Consensus 125 ~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~l----iaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y 200 (728)
T KOG0064|consen 125 FFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFL----IAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMY 200 (728)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHh----hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555545444455555443221 11122222222 22223333334445567889999999999999987
Q ss_pred HcCCcccCCCCCHHH---HHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHH
Q 000905 362 LKLSSLGRKKHSTGE---IVNYIAVDAYRMGEFPFWFHLTWSLA-LQLFLAIGVLFGVV---GLG--ALPGLVLFLICGL 432 (1231)
Q Consensus 362 l~l~~~~~~~~~~G~---iinl~s~D~~~i~~~~~~~~~~~~~~-~~i~~~~~~L~~~l---g~~--~l~gl~~~~~~~~ 432 (1231)
+.-...+.-.+.-|. .=|.++.|+..+.+....+..-..-| +.++++.+.|.... |.+ .++|+++ .+...
T Consensus 201 ~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv-~lTa~ 279 (728)
T KOG0064|consen 201 LSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVV-YLTAF 279 (728)
T ss_pred hccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHH-HHHHH
Confidence 653321111112222 23568899988877544332222222 33444333333222 211 1122111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----
Q 000905 433 LNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ-LRKAYGTVIY---- 507 (1231)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~-~~~~~~~~~~---- 507 (1231)
+...++....+...+....+...-.+-+.++++-..|-+|+-.+.-.+++++..+.-...+.... ....+...-.
T Consensus 280 iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mK 359 (728)
T KOG0064|consen 280 ILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMK 359 (728)
T ss_pred HHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222222222222222335677889999999998766555555443333221111100 0001111100
Q ss_pred --HHHHHH--HHHHHHHHHHHhCCCC--C-----cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000905 508 --WMSPTI--ISSVIFLGCALTGSAP--L-----NASTIF-TVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1231)
Q Consensus 508 --~~~~~~--~~~v~~~~~~l~~~~~--l-----t~~~~f-~~l~~~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fl~~ 575 (1231)
|.+.-+ +++-++.+. ....+. + +-...| +.=-++......+..+-..+..+.|-..--.|+.+.++.
T Consensus 360 YvWsg~GlvmvsiPI~~~t-~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v 438 (728)
T KOG0064|consen 360 YTWSGTGLVMVSIPILTST-LASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSV 438 (728)
T ss_pred HhhccCceEEEEeeeeecc-cCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 100000 000000000 001111 1 111122 222233344556666667777777777777777754421
Q ss_pred -cC-----------CCCchhh-------hcccc-----CCCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECc
Q 000905 576 -HE-----------LNNDDVR-------RISLQ-----KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGS 631 (1231)
Q Consensus 576 -~e-----------~~~~~~~-------~~~~~-----~~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~ 631 (1231)
++ .++.+.. ..+.+ .....|.++|+-.--|.. ..+..++||+|++|..+.|+||
T Consensus 439 ~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGP 516 (728)
T KOG0064|consen 439 LHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGP 516 (728)
T ss_pred HHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECC
Confidence 00 0000000 00000 012458888887765543 3578999999999999999999
Q ss_pred CCCChHHHHHHHhCCCcCCCcEEEEc--CeEEEEeCCCcCCCCCHHHHHhcCC--------CCCHHHHHHHHHHhcchHH
Q 000905 632 VGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKD 701 (1231)
Q Consensus 632 sGSGKSTLl~~Llg~~~~~~G~I~v~--g~iayv~Q~~~lf~~TIreNI~fg~--------~~~~~~~~~vl~~~~L~~d 701 (1231)
+|||||||.+.|-|++|...|..... .++-|+||.|+.=-||.||-|.+-. .+.|++.++.++...|+.-
T Consensus 517 NGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i 596 (728)
T KOG0064|consen 517 NGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHI 596 (728)
T ss_pred CCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHH
Confidence 99999999999999999999988775 4799999999999999999999753 3678899999999999865
Q ss_pred HhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcch
Q 000905 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1231)
Q Consensus 702 i~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~ 781 (1231)
++ -..|.+.. -+----||||+|||++.||..|++|+--+|||+||||-.++|..||+. .++ .|-+.|-||||++.
T Consensus 597 ~q-r~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~-ak~--~gi~llsithrpsl 671 (728)
T KOG0064|consen 597 LQ-REGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQA-AKD--AGISLLSITHRPSL 671 (728)
T ss_pred HH-hccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHH-HHh--cCceEEEeecCccH
Confidence 44 45555543 233456999999999999999999999999999999999999999964 333 48899999999987
Q ss_pred hhc
Q 000905 782 LSE 784 (1231)
Q Consensus 782 l~~ 784 (1231)
.+.
T Consensus 672 wk~ 674 (728)
T KOG0064|consen 672 WKY 674 (728)
T ss_pred HHH
Confidence 654
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=8.9e-26 Score=271.69 Aligned_cols=201 Identities=26% Similarity=0.430 Sum_probs=171.6
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCC-c
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-W 668 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~-~ 668 (1231)
...++++|++++|+++ +++++|+||.|++|+++||+||+|+|||||+++|+|...|.+|+|.+.. ++||.+|+- -
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~ 396 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE 396 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh
Confidence 4568999999999653 6899999999999999999999999999999999999999999999876 599999986 3
Q ss_pred C-CCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000905 669 I-QSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1231)
Q Consensus 669 l-f~~TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep 746 (1231)
+ -+.|+-|++.=+.|. .+..++..+...++..+-.. .....||||||.|+.||+.+.++|.+||||||
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~----------~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE----------KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHh----------CchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 3 455999999866643 47888899988888765432 44567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEe-cChHHHHhc
Q 000905 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS-GNYQELLLA 808 (1231)
Q Consensus 747 ~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~-Gt~~eL~~~ 808 (1231)
|..||.++-..+ ++++... .-|+|+|||+-+++.. |++|+.+++ ++.+. |+|++..+.
T Consensus 467 TNhLDi~s~~aL-e~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 467 TNHLDIESLEAL-EEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CccCCHHHHHHH-HHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999998765 4555433 4599999999999976 899999999 77766 999987754
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1.8e-26 Score=255.94 Aligned_cols=181 Identities=24% Similarity=0.404 Sum_probs=133.3
Q ss_pred CceeeEEEEeeCCeEEEEECcCCCChHHHHHHHh--------CCC--cCCCcE-----------EEEcC-----------
Q 000905 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI--PKISGT-----------VNLYG----------- 658 (1231)
Q Consensus 611 ~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Ll--------g~~--~~~~G~-----------I~v~g----------- 658 (1231)
..|+|+|++||.|.+++|+|.||||||||++.++ +.. .|..++ |.++.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998663 110 122221 22221
Q ss_pred ----------------------------eEEEEeCCCc-CCCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCC
Q 000905 659 ----------------------------SIAYVSQTSW-IQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHG 708 (1231)
Q Consensus 659 ----------------------------~iayv~Q~~~-lf~~TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G 708 (1231)
.+.|..++.. +.+.|+.||+.|.... +.++..++++.++|...
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l------- 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI------- 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh-------
Confidence 1344444432 3456777776554332 22333334444443221
Q ss_pred CcccccCCCCcCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc
Q 000905 709 DLTEIGQRGLNLSGGQKQRIQLARAVYND---ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE 784 (1231)
Q Consensus 709 ~~T~IGe~G~~LSGGQkQRIaLARAly~~---~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~ 784 (1231)
..++...+||||||||++||||+.++ |+++||||||++||++..+.+.+ .+.... +|.|+|+|||+++.+..
T Consensus 162 ---~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 162 ---KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred ---hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHh
Confidence 35677889999999999999999996 79999999999999999998764 565543 58999999999999999
Q ss_pred cCeEEEE------eCCeEeEecCh
Q 000905 785 VDRILVL------EGGQITQSGNY 802 (1231)
Q Consensus 785 aD~Iivl------~~G~I~~~Gt~ 802 (1231)
||+|++| ++|+|+++|++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999 89999999974
No 368
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-24 Score=227.27 Aligned_cols=201 Identities=25% Similarity=0.359 Sum_probs=167.0
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCC--CcCCCcEEEEcC-------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~--~~~~~G~I~v~g------------- 658 (1231)
-++++|+..+-+.. +++|+++||+|++||..||.||+|||||||.++|+|. |++++|+|.++|
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 36788888876432 4799999999999999999999999999999999995 699999999999
Q ss_pred -eEEEEeCCCcCCCC-CHHHHHhcCCC----------CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 659 -SIAYVSQTSWIQSG-SIRDNILYGKP----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 -~iayv~Q~~~lf~~-TIreNI~fg~~----------~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
-|....|.|-=+.| |+++=+.-+.. -..++++++++..++++++.. ..| ...+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~------R~v---N~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE------RYV---NEGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh------ccc---CCCcCcchHH
Confidence 38899999998877 88877653211 124567777888888774431 122 3468999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcc--CeEEEEeCCeEeEecChH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~a--D~Iivl~~G~I~~~Gt~~ 803 (1231)
|.-|+.++.-+|++.|||||=|+||...-+.+ .+.++.+. +++++++|||.-..+... |++.||-+|+|+..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V-~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIV-AEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHH-HHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-
Confidence 99999999999999999999999999988765 45666544 699999999999998876 99999999999999998
Q ss_pred HHHh
Q 000905 804 ELLL 807 (1231)
Q Consensus 804 eL~~ 807 (1231)
||..
T Consensus 230 el~~ 233 (251)
T COG0396 230 ELAE 233 (251)
T ss_pred HHHH
Confidence 7764
No 369
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.9e-25 Score=224.46 Aligned_cols=163 Identities=23% Similarity=0.370 Sum_probs=137.8
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe------------EEEEeCCCcCC-CCCHH
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQTSWIQ-SGSIR 675 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~------------iayv~Q~~~lf-~~TIr 675 (1231)
+...+.++||++.+||.+-|.||+||||||||+.|.|+++|++|+|.++|. .-|..-++-+= .-|+.
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 457999999999999999999999999999999999999999999999862 44555555553 56999
Q ss_pred HHHhcCCC----CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 000905 676 DNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1231)
Q Consensus 676 eNI~fg~~----~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD 751 (1231)
||+.|-++ -+++.++++++..+|.. ++.+|- .+||-|||.|+||||-.++.+|+.|||||++|+|
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dlp~----------~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPV----------GQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCccc-ccccch----------hhcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 99999765 35789999999999964 454553 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhcCCcEEEEEccCcchhh
Q 000905 752 AHTAATLFNECVM-AALEKKTVILVTHQVEFLS 783 (1231)
Q Consensus 752 ~~t~~~i~~~~i~-~~l~~kTvIlvTH~l~~l~ 783 (1231)
.+.... +...+. ..-+|-.||+.||+.--+.
T Consensus 163 k~g~a~-l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 163 KEGVAL-LTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred HHHHHH-HHHHHHHHhcCCCEEEEecCCccCCC
Confidence 998875 555554 3457899999999976554
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.4e-25 Score=237.93 Aligned_cols=190 Identities=25% Similarity=0.360 Sum_probs=146.8
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe------------EEEEe----CCCcCCCCC
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVS----QTSWIQSGS 673 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~------------iayv~----Q~~~lf~~T 673 (1231)
-++.+||||+||||+.++.+|++|+||||+||+|.|...|++|.|.++|. +++|. |--|=.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp-- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP-- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech--
Confidence 46899999999999999999999999999999999999999999999993 33332 2223222
Q ss_pred HHHHHhcCC---CCCHHHH----HHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000905 674 IRDNILYGK---PMDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1231)
Q Consensus 674 IreNI~fg~---~~~~~~~----~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep 746 (1231)
+.|-+..-+ +.+++++ +.-.+.-+|+ ..+-..-..||=|||-|.-||-||+++|+|++||||
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-----------~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLE-----------GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcch-----------hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 333332211 1233333 3333333333 334456788999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchh-hccCeEEEEeCCeEeEecChHHHHhcCchHH
Q 000905 747 FSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1231)
Q Consensus 747 ~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l-~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~ 813 (1231)
|=+||..+...|- +.++.. .++.||++.||.++-+ .-||+|++|++|+++..|+.++|.++-+.+.
T Consensus 184 TvgLDV~aq~~ir-~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k 252 (325)
T COG4586 184 TVGLDVNAQANIR-EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYK 252 (325)
T ss_pred ccCcchhHHHHHH-HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCce
Confidence 9999999988874 455543 4689999999999876 5699999999999999999999987755443
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=214.57 Aligned_cols=214 Identities=26% Similarity=0.415 Sum_probs=163.4
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC---------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------- 658 (1231)
-+++++++..|.+. ..-+|+||++.|||..+|||.||||||||+++|.+-+.|++|+|..+.
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 46788999999754 467999999999999999999999999999999999999999998753
Q ss_pred -------eEEEEeCCCc--C-CCCCHHHHHhcCCC-C--CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHH
Q 000905 659 -------SIAYVSQTSW--I-QSGSIRDNILYGKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 -------~iayv~Q~~~--l-f~~TIreNI~fg~~-~--~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQk 725 (1231)
.-++|.|+|- | ..-|--.|| |+. + ....|-+ +++.+ .++++... =+.+.|.+....+|||.+
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni--GERlma~G~RHYG~-iR~~a-~~WL~~VE-I~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNI--GERLMAIGARHYGN-IRAEA-QDWLEEVE-IDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCcc--chhHHhhhhhhhhh-HHHHH-HHHHHhcc-cCcccccCcccccchHHH
Confidence 2799999984 1 111222222 110 0 1112222 12111 23444332 245677888999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhh-ccCeEEEEeCCeEeEecCh
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 726 QRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~-~aD~Iivl~~G~I~~~Gt~ 802 (1231)
||+.|||-+...|+++.+||||-+||..+.+++.+ +++++. -+-.+|+|||.+...+ .+|+..||++|+++|+|-.
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLD-llrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHH-HHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 99999999999999999999999999999999874 666654 3679999999999876 4899999999999999988
Q ss_pred HHHHhcC-chHHHHH
Q 000905 803 QELLLAG-TAFEQLV 816 (1231)
Q Consensus 803 ~eL~~~~-~~~~~l~ 816 (1231)
+.++... ..|.+++
T Consensus 237 DrvLDDP~hPYTQLL 251 (258)
T COG4107 237 DRVLDDPHHPYTQLL 251 (258)
T ss_pred cccccCCCCchHHHH
Confidence 8877643 3466554
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.92 E-value=5.8e-25 Score=235.96 Aligned_cols=153 Identities=21% Similarity=0.219 Sum_probs=123.3
Q ss_pred eeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCc---------EEEEcC----------eEEEEeCCCcCCCCCH
Q 000905 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---------TVNLYG----------SIAYVSQTSWIQSGSI 674 (1231)
Q Consensus 614 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G---------~I~v~g----------~iayv~Q~~~lf~~TI 674 (1231)
+++++++++| .++|+||||||||||+++|.|..++..| ++..+| +|+||+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999999866533 343333 689999999988
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCC
Q 000905 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAV 750 (1231)
Q Consensus 675 reNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly----~~~~IllLDep~Sal 750 (1231)
|+.. .+++++++++. ++-. ......||||||||++||||+. ++|++++|||||++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~~~~----~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------PGKK----VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------CCcc----ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 3321 24555666555 1111 2445679999999999999985 577999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEe
Q 000905 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1231)
Q Consensus 751 D~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~ 792 (1231)
|++....+. +.++...++.|+|+|||+++.+..||+++.|.
T Consensus 149 D~~~~~~l~-~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 149 DDANVERFA-RLLKEFSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CHHHHHHHH-HHHHHhccCCEEEEEECCHHHHhhcceEEEEE
Confidence 999999876 46666666899999999999999999999985
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=1.2e-23 Score=234.33 Aligned_cols=177 Identities=22% Similarity=0.268 Sum_probs=123.6
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC----------------cCCCcEEEEcCeEEEEeCCCcCC---
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI----------------PKISGTVNLYGSIAYVSQTSWIQ--- 670 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~----------------~~~~G~I~v~g~iayv~Q~~~lf--- 670 (1231)
..++++++ |++++|+||+|||||||+++|.+.+ .+.+|.....+.|.++.|++.-+
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 34677766 8899999999999999999998443 33333111112334444443110
Q ss_pred ---CCCHH-------HHHhcCC-CCCHHHHHHHHHHhcchHHH--hcCCCCCccc-------ccCCCCcCChHHHHHHHH
Q 000905 671 ---SGSIR-------DNILYGK-PMDKARYDKAIKACALDKDI--NNFDHGDLTE-------IGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 671 ---~~TIr-------eNI~fg~-~~~~~~~~~vl~~~~L~~di--~~lp~G~~T~-------IGe~G~~LSGGQkQRIaL 730 (1231)
+-+++ +|+.+.. ..+.+++...++.+++.++- ...|+|..+. .++++.+||||||||++|
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 01111 3333322 35667788888887775431 1134443332 357889999999999999
Q ss_pred HHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEe
Q 000905 731 ARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1231)
Q Consensus 731 ARAly----~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~ 792 (1231)
|||++ ++|++++|||||++||+++.+.+.+ .+....+++|+|++||+.+....||+|++|+
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~-~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN-MIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 99996 4689999999999999999998764 5666656889999999988888999999995
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=1.6e-23 Score=228.34 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=130.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEee-CCeEEEEECcCCCChHHHHHHHhC-CCcCCCcEEEEc------------Ce
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIK-WAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLY------------GS 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~-~Ge~vaIvG~sGSGKSTLl~~Llg-~~~~~~G~I~v~------------g~ 659 (1231)
.|+++|.. +|..+ ++++|+.. +|+.++|+||+|||||||+++|.+ ++.+..+....+ ..
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 57888877 66422 57787654 599999999999999999999995 444444444321 25
Q ss_pred EEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCC-CcccccCCCCcCChHHHHHHHHHHHHhc--
Q 000905 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHG-DLTEIGQRGLNLSGGQKQRIQLARAVYN-- 736 (1231)
Q Consensus 660 iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G-~~T~IGe~G~~LSGGQkQRIaLARAly~-- 736 (1231)
|++++|++.-.- .++.+. ..+.+.+.+.+. ++.| +++.+...+.+||||||||++||||+..
T Consensus 78 v~~~f~~~~~~~----~~~r~~-gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p 142 (213)
T cd03279 78 VSFTFQLGGKKY----RVERSR-GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSE 142 (213)
T ss_pred EEEEEEECCeEE----EEEEec-CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHH
Confidence 888988873322 222222 334444433221 2223 3455567788999999999999999974
Q ss_pred --------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-cCeEEEEeCCeE
Q 000905 737 --------DADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1231)
Q Consensus 737 --------~~~IllLDep~SalD~~t~~~i~~~~i~~~l~-~kTvIlvTH~l~~l~~-aD~Iivl~~G~I 796 (1231)
+|++++|||||++||+.+.+.+. +.+....+ ++|+|+|||+++.+.. +|+|++|++|.+
T Consensus 143 ~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 143 VLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 67999999999999999999865 56665544 8899999999998755 799999999864
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.6e-23 Score=206.89 Aligned_cols=187 Identities=24% Similarity=0.394 Sum_probs=138.9
Q ss_pred EEEEeeeEeeC----CCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC------------
Q 000905 595 VKIQEGNFSWD----PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1231)
Q Consensus 595 I~~~~~sf~y~----~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------ 658 (1231)
+.++|++.++. .+-.-|+++|+||+++.||++++-||||||||||++.|-|-|.|++|+|.+.-
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 45666654442 11124799999999999999999999999999999999999999999998752
Q ss_pred ---------eEEEEeCCCc-CCCCC----HHHHH-hcCCCCC--HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCC
Q 000905 659 ---------SIAYVSQTSW-IQSGS----IRDNI-LYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1231)
Q Consensus 659 ---------~iayv~Q~~~-lf~~T----IreNI-~fg~~~~--~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LS 721 (1231)
.||||+|--- +..-+ +.|-+ .-|-+.+ .++-...+..-.+-+-+=.|| ..+.|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------CcccC
Confidence 4999999522 22222 22221 1233322 233444455555555555554 46899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhh-ccCeEEEEe
Q 000905 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLS-EVDRILVLE 792 (1231)
Q Consensus 722 GGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~l~-~aD~Iivl~ 792 (1231)
||++||+.|||.+.-|-+|++|||||++||+...+.++ +.|.+ ..+|...|=|=|+-+.-. -|||++-|.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVv-eli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVV-ELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHH-HHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999999999999999999999999988776 45654 457999999999877643 489888774
No 376
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.89 E-value=5e-23 Score=265.84 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=175.0
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------- 658 (1231)
..+..+|.+..|+.... +.+++|+.|++||+.++.|++||||||++++|.|+.+|++|++.++|
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 56889999999975432 89999999999999999999999999999999999999999999976
Q ss_pred eEEEEeCCCcCCC-CCHHHHHhcCC-----CC-C-HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHH
Q 000905 659 SIAYVSQTSWIQS-GSIRDNILYGK-----PM-D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 ~iayv~Q~~~lf~-~TIreNI~fg~-----~~-~-~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaL 730 (1231)
++|||||+.-++. -|.||.+.+-. +. | ++.+++.+++.+|.+.... .-.++|||||.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-----------~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-----------QVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-----------chhhCCCcchhhHHH
Confidence 3999999977765 59999997632 21 2 3446777888887765442 246899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHHHhc
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 731 ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~-~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
|-|+..+|++++|||||+++||+..+++. +.+....+ +|.+|+.||.++.... |||+.+|.+|++...|+.++|..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW-~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLW-DIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 99999999999999999999999999987 46766655 4599999999998764 999999999999999999999866
Q ss_pred Cch
Q 000905 809 GTA 811 (1231)
Q Consensus 809 ~~~ 811 (1231)
-|.
T Consensus 789 fG~ 791 (885)
T KOG0059|consen 789 YGS 791 (885)
T ss_pred cCC
Confidence 443
No 377
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.5e-21 Score=227.13 Aligned_cols=282 Identities=17% Similarity=0.256 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHH
Q 000905 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1231)
Q Consensus 937 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~ 1016 (1231)
...+..++.++++++.++|..++.+.+.+..+++...++++++|+.++|||.|-+|.|++|+|+|...+-..++..+...
T Consensus 190 ~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~ 269 (716)
T KOG0058|consen 190 ACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDG 269 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 34556667778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH---HHHHHH-HHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhcccc
Q 000905 1017 AASGTELLAIIGIMTFVTWQVLV---VAIFAM-VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092 (1231)
Q Consensus 1017 ~~~~~~~l~~i~vi~~~~~~~~~---~~ipl~-~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~ 1092 (1231)
+.+.++.++.++.+++.+|.+.. +.+|++ ++..++.++|.+.||+.+--- ++ ......|.+++++|||+|+.
T Consensus 270 lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~--A~--a~~vaeE~ls~~rTVRsfa~ 345 (716)
T KOG0058|consen 270 LRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDAL--AR--ANQVAEEVLSAMRTVRSFAA 345 (716)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHhhhhhHHHhhh
Confidence 99999999999999999998643 345554 445668889989999987532 22 25788999999999999999
Q ss_pred HHHHHHHHHHHhhh----hhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcChhHHHHHHHHHHHHHHHH
Q 000905 1093 VDRFFQNYLKLVDI----DASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQ 1167 (1231)
Q Consensus 1093 ~~~f~~~~~~~lD~----~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~-~v~~~~~~~~~g~~Gl~lsyal~l~~~l 1167 (1231)
|++=.++|.+.++. +.+..+.. ....|.. ++.+++.+...-.. .-+...+.+++|.+--.+-|+..+...+
T Consensus 346 E~~E~~ry~~~l~~~~~i~~k~a~a~-~~f~~~~---~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl 421 (716)
T KOG0058|consen 346 EEQEVKRYNKKLREVLKLSKKEAVAY-GIFFGST---NLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSL 421 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-hHhHhHH---HHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHH
Confidence 97777777666665 33322221 2223432 34444332221111 1122467899999988999999999999
Q ss_pred HHHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEe--cCCCC
Q 000905 1168 VFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSL--HMELI 1230 (1231)
Q Consensus 1168 ~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rY--r~~l~ 1230 (1231)
.++...|+++-..+.|-||+.||++.+|.=+.. +...|. +-+|.|||+||++.| ||+.|
T Consensus 422 ~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~~ 482 (716)
T KOG0058|consen 422 SGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAPD--HLQGVIEFEDVSFAYPTRPDVP 482 (716)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Cccccc--cccceEEEEEeeeecCCCCCch
Confidence 999999999999999999999999886665432 322333 678999999999999 56543
No 378
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.89 E-value=1.2e-22 Score=258.58 Aligned_cols=97 Identities=27% Similarity=0.552 Sum_probs=87.6
Q ss_pred ccCCCCcCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeE
Q 000905 713 IGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRI 788 (1231)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~~~---~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~I 788 (1231)
.+.+..+||||||||++||||+.++| ++|||||||++||++..+.+. +.+..+. +|+|+|+|||+++.+..||+|
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 57788899999999999999999999 999999999999999999876 4565543 589999999999999999999
Q ss_pred EEE------eCCeEeEecChHHHHhcCc
Q 000905 789 LVL------EGGQITQSGNYQELLLAGT 810 (1231)
Q Consensus 789 ivl------~~G~I~~~Gt~~eL~~~~~ 810 (1231)
++| ++|+|++.|+++++.+...
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 999 7999999999999987553
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.89 E-value=9.5e-23 Score=220.20 Aligned_cols=153 Identities=21% Similarity=0.311 Sum_probs=122.9
Q ss_pred EEEEeeCCeEEEEECcCCCChHHHHHHH----hCCCcCCCcEEEEc----------CeEEEEeCCC-----cCCC-CCHH
Q 000905 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI----LGEIPKISGTVNLY----------GSIAYVSQTS-----WIQS-GSIR 675 (1231)
Q Consensus 616 inl~i~~Ge~vaIvG~sGSGKSTLl~~L----lg~~~~~~G~I~v~----------g~iayv~Q~~-----~lf~-~TIr 675 (1231)
.++++.+| +++|+||+|||||||+.+| .|..+|.+|.+..+ ..|++++|++ .+.. -|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 44667778 9999999999999999999 49999988865411 2699999998 3322 3999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH------HHHHHHHhcCCCEEEEeCCCCC
Q 000905 676 DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR------IQLARAVYNDADIYLFDDPFSA 749 (1231)
Q Consensus 676 eNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR------IaLARAly~~~~IllLDep~Sa 749 (1231)
||+.++. +++.++.+ .+...+|||||||| ++||||+..+|++++||||+++
T Consensus 95 ~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~ 151 (204)
T cd03240 95 ENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN 151 (204)
T ss_pred hceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc
Confidence 9998763 33333332 45677999999996 7999999999999999999999
Q ss_pred CCHHHHH-HHHHHHHHHhcC--CcEEEEEccCcchhhccCeEEEEeC
Q 000905 750 VDAHTAA-TLFNECVMAALE--KKTVILVTHQVEFLSEVDRILVLEG 793 (1231)
Q Consensus 750 lD~~t~~-~i~~~~i~~~l~--~kTvIlvTH~l~~l~~aD~Iivl~~ 793 (1231)
||++..+ .+. +.+....+ ++|+|++||+.+.+..||+|++|++
T Consensus 152 LD~~~~~~~l~-~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 152 LDEENIEESLA-EIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCHHHHHHHHH-HHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999988 765 45555544 7899999999999999999999954
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=4.4e-23 Score=236.63 Aligned_cols=199 Identities=23% Similarity=0.366 Sum_probs=168.0
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCC--
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~-- 667 (1231)
...|.++|++|.|+++. .+++++||-|.+++.+|+|||+|+||||||+++.|+..|..|.|.-.. .+++-.|.-
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh
Confidence 35689999999998653 799999999999999999999999999999999999999999997653 577767753
Q ss_pred -cCCCCCHHHHHh--cCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEe
Q 000905 668 -WIQSGSIRDNIL--YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1231)
Q Consensus 668 -~lf~~TIreNI~--fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLD 744 (1231)
--.+.|.-||+. |.+.-..+.++..+..|+|..|...-| -.+||+|||.||..||..++.|.|++||
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHhcCCcEEEec
Confidence 356778888885 454467889999999999998877655 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeE-ecChHHH
Q 000905 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQEL 805 (1231)
Q Consensus 745 ep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~-~Gt~~eL 805 (1231)
|||++||.++-..+ .++|... .-++|+|||...++.+ |++|.+.+||.+.. .|.+..-
T Consensus 535 EPtnhLDi~tid~l-aeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 535 EPTNHLDIETIDAL-AEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred CCCcCCCchhHHHH-HHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 99999999997764 4566553 4589999999999876 89999999998864 5665543
No 381
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=2.5e-22 Score=224.63 Aligned_cols=172 Identities=20% Similarity=0.247 Sum_probs=131.0
Q ss_pred CeEEEEECcCCCChHHHHHHHhCCCcCCC-cEEEEcC----------------eEEEEeCCCcC----------CCCCHH
Q 000905 623 AQKIAVCGSVGAGKSSLLYAILGEIPKIS-GTVNLYG----------------SIAYVSQTSWI----------QSGSIR 675 (1231)
Q Consensus 623 Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~-G~I~v~g----------------~iayv~Q~~~l----------f~~TIr 675 (1231)
..+++||||||||||||+.+|.+.+.+.. |++...| .|+++.|++-. ..-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 55999999999999999999999987753 4554422 68999998632 145888
Q ss_pred HHHhcCCC---------CCHHHHHHHHHHhcchHH-H-hcCCCCCc-------ccccCCCCcCChHHHHHHHHHHHHh--
Q 000905 676 DNILYGKP---------MDKARYDKAIKACALDKD-I-NNFDHGDL-------TEIGQRGLNLSGGQKQRIQLARAVY-- 735 (1231)
Q Consensus 676 eNI~fg~~---------~~~~~~~~vl~~~~L~~d-i-~~lp~G~~-------T~IGe~G~~LSGGQkQRIaLARAly-- 735 (1231)
+||..+.. ...+++.+.++.+++..| . .-+++|.= .....+..+||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88866532 235678888888887521 0 00122211 1234567789999999999999997
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEe--CCe
Q 000905 736 --NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE--GGQ 795 (1231)
Q Consensus 736 --~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~--~G~ 795 (1231)
++|++++|||||++||+...+++.+ .++...+|.|+|+|||+.+.+..||+|+-+. ||.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 6889999999999999999998764 5666667899999999999999999999774 554
No 382
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.87 E-value=6.4e-20 Score=234.02 Aligned_cols=279 Identities=19% Similarity=0.213 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHH
Q 000905 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1231)
Q Consensus 938 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~ 1017 (1231)
+.+++++.++..++.+++..+..+.+.+...++++++++++++.|++|||++++|.++||+++|++.++..+...+..++
T Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l 283 (711)
T TIGR00958 204 IFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLL 283 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666777777888888889999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccH
Q 000905 1018 ASGTELLAIIGIMTFVTWQVLVVAI---FAM-VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV 1093 (1231)
Q Consensus 1018 ~~~~~~l~~i~vi~~~~~~~~~~~i---pl~-~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~ 1093 (1231)
..++.+++.++++...+|.+.++.+ |+. ++..++.+++.+.+++.+. ..+...+++.|+++|+.|||+|+.|
T Consensus 284 ~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~g~~~Ik~~~~e 359 (711)
T TIGR00958 284 RNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQE----AVAKANQVAEEALSGMRTVRSFAAE 359 (711)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcChHHHHHhccc
Confidence 8888888888888888887655433 222 2223344555444544443 3344578999999999999999999
Q ss_pred HHHHHHHHHHhhhhhchHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHH
Q 000905 1094 DRFFQNYLKLVDIDASLFFHT---NGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFL 1170 (1231)
Q Consensus 1094 ~~f~~~~~~~lD~~~~~~~~~---~~~~rWl~~rl~~i~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~ 1170 (1231)
+++.+++.+..|+..+..... .....|...-+..++.++++..+...+ ..+.+++|.+...+.|...+...+..+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv--~~g~it~G~lva~~~~~~~l~~~l~~l 437 (711)
T TIGR00958 360 EGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLV--LTGKVSSGNLVSFLLYQEQLGEAVRVL 437 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888766544332 233445544444443333333333222 467899999999999999999999999
Q ss_pred HHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEec
Q 000905 1171 SRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLH 1226 (1231)
Q Consensus 1171 vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr 1226 (1231)
...+.++.....|.||+.+|.+.++|.+.. + ....+|.+|.|+|+||+++|.
T Consensus 438 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~~~~~~~~I~~~nVsf~Y~ 489 (711)
T TIGR00958 438 SYVYSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLAPLNLEGLIEFQDVSFSYP 489 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCCCCCCCCeEEEEEEEEECC
Confidence 999999999999999999999877665321 1 112356789999999999995
No 383
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=2.2e-22 Score=224.31 Aligned_cols=170 Identities=21% Similarity=0.258 Sum_probs=130.4
Q ss_pred eCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--------------------eEEEEeCCC--cCCCCCHHHHH
Q 000905 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------------SIAYVSQTS--WIQSGSIRDNI 678 (1231)
Q Consensus 621 ~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--------------------~iayv~Q~~--~lf~~TIreNI 678 (1231)
.+| .++|+||+|||||||+.+|.+...+..|++..++ .+.|..|++ .++..+++++-
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 344 9999999999999999999998877666664321 234444442 23333444432
Q ss_pred h-c---CCCCCHHHHHHHHHHhcchHHHhc--CCCCCcccccCCC---------CcCChHHHHHHHHHHHHhc----CCC
Q 000905 679 L-Y---GKPMDKARYDKAIKACALDKDINN--FDHGDLTEIGQRG---------LNLSGGQKQRIQLARAVYN----DAD 739 (1231)
Q Consensus 679 ~-f---g~~~~~~~~~~vl~~~~L~~di~~--lp~G~~T~IGe~G---------~~LSGGQkQRIaLARAly~----~~~ 739 (1231)
. + |++.++++|++.++.++++.|... .++|+-+.+.+.. .+||||||||++||||+.. +|+
T Consensus 100 ~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~ 179 (247)
T cd03275 100 SSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAP 179 (247)
T ss_pred eEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCC
Confidence 1 1 445788999999999999866443 4677777776544 7899999999999999975 499
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhccCeEEEEe
Q 000905 740 IYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLE 792 (1231)
Q Consensus 740 IllLDep~SalD~~t~~~i~~~~i~~~l~-~kTvIlvTH~l~~l~~aD~Iivl~ 792 (1231)
++||||||++||+....++. +.+....+ |.|+|+|||+.+.+..||++++|.
T Consensus 180 ~lllDEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 180 FFVLDEVDAALDNTNVGKVA-SYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred EEEEecccccCCHHHHHHHH-HHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 99999999999999999876 45665544 899999999999999999999985
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=2.8e-21 Score=255.00 Aligned_cols=199 Identities=22% Similarity=0.338 Sum_probs=143.5
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHH---------HHhCCCcC---------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY---------AILGEIPK--------------- 649 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~---------~Llg~~~~--------------- 649 (1231)
.++++|++. ..|+|+|++|++||+++|+|++|||||||++ .|.|...+
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 578888752 3699999999999999999999999999999 55554322
Q ss_pred ---------CCcEEE-----------------------------Ec---C------eEE---E-EeCCC-----------
Q 000905 650 ---------ISGTVN-----------------------------LY---G------SIA---Y-VSQTS----------- 667 (1231)
Q Consensus 650 ---------~~G~I~-----------------------------v~---g------~ia---y-v~Q~~----------- 667 (1231)
-++.+. .+ | -++ + .+..-
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 111222 11 0 012 2 11100
Q ss_pred ------cCC-CCCHHHHHhcCCC-----C-CHHHHHHHHHHhcchHHHhcCCCCCccc-ccCCCCcCChHHHHHHHHHHH
Q 000905 668 ------WIQ-SGSIRDNILYGKP-----M-DKARYDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQLARA 733 (1231)
Q Consensus 668 ------~lf-~~TIreNI~fg~~-----~-~~~~~~~vl~~~~L~~di~~lp~G~~T~-IGe~G~~LSGGQkQRIaLARA 733 (1231)
..+ ..||.||+.++-. + +.++..+.++ .++.+ |+... .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 122 3488999887642 1 1233333332 12222 34333 577788999999999999999
Q ss_pred Hh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEEEEe------CCeEeEecChH
Q 000905 734 VY---NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLE------GGQITQSGNYQ 803 (1231)
Q Consensus 734 ly---~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~------~G~I~~~Gt~~ 803 (1231)
+. ++|++|||||||++||++..+.+++ .+..+. +|+|+|+|||+++.++.||+|++|+ +|++++.|+++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 98 5999999999999999999998764 565543 5899999999999999999999996 89999999999
Q ss_pred HHHhcC
Q 000905 804 ELLLAG 809 (1231)
Q Consensus 804 eL~~~~ 809 (1231)
++....
T Consensus 903 el~~~~ 908 (1809)
T PRK00635 903 ELIHLH 908 (1809)
T ss_pred HHHhcc
Confidence 998643
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=5e-21 Score=243.50 Aligned_cols=92 Identities=29% Similarity=0.582 Sum_probs=83.2
Q ss_pred ccCCCCcCChHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeE
Q 000905 713 IGQRGLNLSGGQKQRIQLARAVYN---DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRI 788 (1231)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~---~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~I 788 (1231)
+++...+||||||||++||||+.+ +|++|||||||++||++..+.+.+ .+..+. +|+|+|+|||+++.+..||+|
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~TVIvi~H~~~~i~~aD~i 900 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNTVVVIEHNLDVIKTADYI 900 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 578889999999999999999997 599999999999999999998764 565543 589999999999999999999
Q ss_pred EEE------eCCeEeEecChHHH
Q 000905 789 LVL------EGGQITQSGNYQEL 805 (1231)
Q Consensus 789 ivl------~~G~I~~~Gt~~eL 805 (1231)
++| ++|+|++.|+++++
T Consensus 901 i~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 901 IDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEecCCccCCCCEEEEeCCHHHh
Confidence 999 79999999999886
No 386
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=5.5e-22 Score=215.30 Aligned_cols=184 Identities=15% Similarity=0.167 Sum_probs=129.8
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCC-
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG- 672 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~- 672 (1231)
.++++|.. +|. +..+++++++ ++++|+||+||||||++++|...+-...... -.++++|++|+....+.
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCC
Confidence 35666654 553 3468888887 8999999999999999999982211110111 12469999999877654
Q ss_pred CHHHHHhcCCCC-CHHHHH--HH-HH--H----hcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhc----CC
Q 000905 673 SIRDNILYGKPM-DKARYD--KA-IK--A----CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN----DA 738 (1231)
Q Consensus 673 TIreNI~fg~~~-~~~~~~--~v-l~--~----~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~----~~ 738 (1231)
|.++++.+-... +.+.++ .. .+ . .+-..++..||++.++.+ ..||||||||++||||++. +|
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHHHHHHHHHhcccCCC
Confidence 788877654332 111100 00 00 0 011123455677777654 4799999999999999973 58
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEe
Q 000905 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1231)
Q Consensus 739 ~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~ 792 (1231)
++++|||||++||++..+.+. +.+....++.|+|++||+.+....||+|++|.
T Consensus 151 ~ililDEPt~gLD~~~~~~l~-~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVA-NYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHH-HHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 999999999999999998765 56766667889999999988888999999995
No 387
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=1e-21 Score=246.27 Aligned_cols=190 Identities=25% Similarity=0.376 Sum_probs=161.0
Q ss_pred CCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC--cCCCcEEEEcC----------eEEEEeCCC-cCCCCCH
Q 000905 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG----------SIAYVSQTS-WIQSGSI 674 (1231)
Q Consensus 608 ~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~--~~~~G~I~v~g----------~iayv~Q~~-~lf~~TI 674 (1231)
+.+..|+||+=-++||.++|+.|+|||||||||+.|.|-. =..+|+|.++| .+|||.|+. ++-.-||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 3467999999999999999999999999999999999864 34578899998 499999975 6778899
Q ss_pred HHHHhcCC----C--C-CH---HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC-CEEEE
Q 000905 675 RDNILYGK----P--M-DK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA-DIYLF 743 (1231)
Q Consensus 675 reNI~fg~----~--~-~~---~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~-~IllL 743 (1231)
||-+.|.. | . ++ +.+++|++..+|++-- |..||.-|..||.+||.|+.||=-|..|| .|+.|
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFL 954 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSILFL 954 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeEEe
Confidence 99999862 2 2 23 3467888888886533 45699999999999999999999999999 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcch--hhccCeEEEEe-CCeEeEecChHHH
Q 000905 744 DDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEF--LSEVDRILVLE-GGQITQSGNYQEL 805 (1231)
Q Consensus 744 Dep~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~--l~~aD~Iivl~-~G~I~~~Gt~~eL 805 (1231)
|||||+||++++..|++ .+++ ...|+|++..=|+++. .+..|+++.|+ +|+.+..|+..+=
T Consensus 955 DEPTSGLDsqaA~~i~~-~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVMR-FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred cCCCCCccHHHHHHHHH-HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 99999999999998874 4544 4589999999999984 68999999995 7899999986653
No 388
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.3e-20 Score=221.32 Aligned_cols=196 Identities=25% Similarity=0.422 Sum_probs=153.5
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe--------------
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------- 659 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~-------------- 659 (1231)
.++++|.+.. ..++|+||++++||.++|.|-.|||+|=++.+|.|.-++.+|+|.++|+
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4556665431 2588999999999999999999999999999999998999999999994
Q ss_pred EEEEeCCC----cCCCCCHHHHHhcCC--CCCHH-HHHHHHHHhcchHHHhcC---CCCCcccccCCCCcCChHHHHHHH
Q 000905 660 IAYVSQTS----WIQSGSIRDNILYGK--PMDKA-RYDKAIKACALDKDINNF---DHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 660 iayv~Q~~----~lf~~TIreNI~fg~--~~~~~-~~~~vl~~~~L~~di~~l---p~G~~T~IGe~G~~LSGGQkQRIa 729 (1231)
|+|||.|- -+...||++||.+.. .+... .+.+.-+....++.++.| ..+.++. -.+||||-+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~----v~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP----IGTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch----hhcCCchhhhhHH
Confidence 99999863 466889999998761 11100 233333333333444433 2233334 4579999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEccCcch-hhccCeEEEEeCCeEeEecC
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 730 LARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~-~l~~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~~Gt 801 (1231)
|||.++.+|+|+||||||.++|.-+.+.|++ .+++ ..+|+++|+||..+.. +..||||+||.+|+|+..=+
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999985 5554 4579999999999876 56899999999999987533
No 389
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=3.2e-18 Score=212.31 Aligned_cols=282 Identities=13% Similarity=0.040 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHH
Q 000905 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1231)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~ 1025 (1231)
++..++.++..++....+.+...++..++++++++.|.+||++++.|+++||+++|++.++..+...+..++..++.+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~ 143 (529)
T TIGR02868 64 IGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSA 143 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666777788889999999999999999999999999999999999999998888777777777777777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHh
Q 000905 1026 IIGIMTFVTWQVLVVAIFAMVAV-RFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV 1104 (1231)
Q Consensus 1026 ~i~vi~~~~~~~~~~~ipl~~~~-~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~l 1104 (1231)
.++++....|.+.++++..+.++ .....++.+..|..++-....++...+++.|+++|+.|||+|+.|+++.+++.+..
T Consensus 144 ~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~ 223 (529)
T TIGR02868 144 AVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAAD 223 (529)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHH
Confidence 77777778887765544332222 22233333334444343344567889999999999999999999999999999888
Q ss_pred hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 000905 1105 DIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIIS 1183 (1231)
Q Consensus 1105 D~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a-~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~S 1183 (1231)
+...+........+.+...-..++..+..+... +.......|.+++|.+...+.|+..+...+..+...+.++.....|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 303 (529)
T TIGR02868 224 RELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAA 303 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666544433333332222332222111111 1111224678899999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1184 VERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1184 vERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
.||+.++.+.|+|.+.. +...+++.+|..|+|+|+||+++|.++
T Consensus 304 ~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~Y~~~ 347 (529)
T TIGR02868 304 AERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLELRDLSFGYPGS 347 (529)
T ss_pred HHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEEEEEEEEecCCC
Confidence 99999999877764321 111122245677899999999999653
No 390
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.83 E-value=5.9e-18 Score=216.79 Aligned_cols=278 Identities=14% Similarity=0.143 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHH
Q 000905 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1231)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~ 1020 (1231)
++++.++..++.+++..+....+.+...++..++++++++.|++||++.++|.++||++ |.+.+-+.+...+...+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~ 280 (708)
T TIGR01193 202 LIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDM 280 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHH
Confidence 44444555667777888888889999999999999999999999999999999999998 77766555444444444444
Q ss_pred HHHHHHHHHHHhhhHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHH
Q 000905 1021 TELLAIIGIMTFVTWQVLVVA---IFAMV-AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1231)
Q Consensus 1021 ~~~l~~i~vi~~~~~~~~~~~---ipl~~-~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f 1096 (1231)
+.++..++++...+|++.++. +|+.+ +..++++.+.+..++..+ ..+-..+++.|+++|+.|||+||.|+++
T Consensus 281 ~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 356 (708)
T TIGR01193 281 WILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQ----ANAVLNSSIIEDLNGIETIKSLTSEAER 356 (708)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHhcccHHH
Confidence 444555555556666654433 23322 223344444444444433 3456678999999999999999999999
Q ss_pred HHHHHHHhhhhhchHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHH
Q 000905 1097 FQNYLKLVDIDASLFFHTNG---VMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRW 1173 (1231)
Q Consensus 1097 ~~~~~~~lD~~~~~~~~~~~---~~rWl~~rl~~i~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~ 1173 (1231)
.+++.+..+...+..+.... ...++..-+..++.+.++..+...+ ..+.++.|.+-..++++..+...+..+...
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv--~~g~ls~G~lva~~~l~~~~~~pl~~l~~~ 434 (708)
T TIGR01193 357 YSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLV--MRGKLTLGQLITFNALLSYFLTPLENIINL 434 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877765555443322 2233333334344444434443333 367899999888899999999999999999
Q ss_pred HHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1174 ~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
+.++.....++||+.++.+.|+|.+.. ..+.+.++..|+|+|+||+++|.++
T Consensus 435 ~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~~~~~~~~~~I~~~~vsf~y~~~ 486 (708)
T TIGR01193 435 QPKLQAARVANNRLNEVYLVDSEFINK---KKRTELNNLNGDIVINDVSYSYGYG 486 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccccc---ccccCCCCCCCcEEEEEEEEEcCCC
Confidence 999999999999999999988876421 1122346678999999999999643
No 391
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=9e-18 Score=211.02 Aligned_cols=278 Identities=18% Similarity=0.252 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHH
Q 000905 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1231)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~ 1020 (1231)
++++.++..++.+.+.......+.+.+.+++.++++++++.|++||+..+.|+++||+++|++.++......+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666777777788888999999999999999999999999999999999999999988888777777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHH---HHHHHHHH-HHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHH
Q 000905 1021 TELLAIIGIMTFVTWQVLVVA---IFAMVAVR-FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1231)
Q Consensus 1021 ~~~l~~i~vi~~~~~~~~~~~---ipl~~~~~-~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f 1096 (1231)
+.+++.++++....|++.++. +|+.++.. +.++...+..++.+ ..++...+|+.|+++|+.+||+|+.++++
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~~~~~ik~~~~~~~~ 226 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVR----AYLADINDGFNEVINGMSVIQQFRQQARF 226 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcChHHHHHhhhhHHH
Confidence 777777777777777654332 33333222 22333223333332 34567789999999999999999999999
Q ss_pred HHHHHHHhhhhhchHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 1097 FQNYLKLVDIDASLFFHTNGVMEWL-ILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1231)
Q Consensus 1097 ~~~~~~~lD~~~~~~~~~~~~~rWl-~~rl~~i~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~ 1175 (1231)
.+++.+..+...+..+.....+.+. ..-..++..+.++...+.......+.++.|.+-..++|+..+...++.+...+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~ 306 (592)
T PRK10790 227 GERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQS 306 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887766555444332222221 112222222221111111111236778999988999999999999999999999
Q ss_pred HHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1176 ~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
++++...|.||+.++.+.++|++. +. ..++..|+|+|+|++++|+++
T Consensus 307 ~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~~~~v~f~y~~~ 353 (592)
T PRK10790 307 MLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRIDIDNVSFAYRDD 353 (592)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEEEEEEEEEeCCC
Confidence 999999999999999887655321 11 124556899999999999643
No 392
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.83 E-value=9.8e-18 Score=210.08 Aligned_cols=286 Identities=13% Similarity=0.222 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHH
Q 000905 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1231)
Q Consensus 937 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~ 1016 (1231)
+.++++++.++..++.+++..+....+.+....++..+++++++.|.++|++.+.|+++||+++|++.+++.+...+..+
T Consensus 56 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 135 (571)
T TIGR02203 56 VPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVL 135 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777778888888889999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHH
Q 000905 1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1231)
Q Consensus 1017 ~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f 1096 (1231)
+..++.++..++++.+.+|++.++.+..+.+..++...+.+..++..+-.....+...++++|+++|+.+||+++.++++
T Consensus 136 i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~ 215 (571)
T TIGR02203 136 VRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE 215 (571)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHH
Confidence 88888888888888888888776655555454444444444444444444445678899999999999999999999999
Q ss_pred HHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1231)
Q Consensus 1097 ~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~-~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~ 1175 (1231)
.+++.+..|...+..........|+..-.+++..+...+..++ ......+.+++|.+...++|+..+...+..+...+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 295 (571)
T TIGR02203 216 TRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNA 295 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887776666556666555554443222211111 112246789999999999999999999999999999
Q ss_pred HHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1176 ~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
++.....+.||+.++.+.++|.+. +..+++ |..|+|+|+||+++|.+
T Consensus 296 ~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~~~~v~f~y~~ 342 (571)
T TIGR02203 296 PMQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVEFRNVTFRYPG 342 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEEEEEEEEEcCC
Confidence 999999999999999987766542 111211 34689999999999965
No 393
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.83 E-value=2.1e-20 Score=197.20 Aligned_cols=150 Identities=21% Similarity=0.224 Sum_probs=104.8
Q ss_pred EEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeE--EEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHH
Q 000905 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIK 694 (1231)
Q Consensus 617 nl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~i--ayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~ 694 (1231)
.+...++.+.+|+||+|||||+++.+|.=.+--.+-....+... .+-...++--+++|+ |.|.
T Consensus 16 ~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f~------------- 80 (178)
T cd03239 16 TVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVE--ITFD------------- 80 (178)
T ss_pred EEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEE--EEEE-------------
Confidence 33333334899999999999999999853221111111000000 011111222222221 2222
Q ss_pred HhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CC
Q 000905 695 ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EK 769 (1231)
Q Consensus 695 ~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl----y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~ 769 (1231)
..+..+|+|+.|+| ||||||||++||||+ +++|+++++|||++++|++..+.+.+ .+.... ++
T Consensus 81 -----~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~~g 148 (178)
T cd03239 81 -----KSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAKHT 148 (178)
T ss_pred -----CceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCC
Confidence 22778999999998 999999999999998 47999999999999999999998764 565543 46
Q ss_pred cEEEEEccCcchhhccCeEEEEeC
Q 000905 770 KTVILVTHQVEFLSEVDRILVLEG 793 (1231)
Q Consensus 770 kTvIlvTH~l~~l~~aD~Iivl~~ 793 (1231)
+|+|++||+.+.+..+|+++.+++
T Consensus 149 ~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 149 SQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CEEEEEECCHHHHhhCCeEEEEEE
Confidence 999999999999999999999975
No 394
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.82 E-value=4.7e-17 Score=181.64 Aligned_cols=270 Identities=20% Similarity=0.216 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 280 IFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVY 358 (1231)
Q Consensus 280 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~i~ 358 (1231)
++..++.++..+...+.|++++.+++...++..+ ....+.+..++++..++.......+.+...+.+.+++..++..+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888899999999999986554333 333444444444444445554445555577899999999999999
Q ss_pred HHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 359 QKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1231)
Q Consensus 359 ~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~ 437 (1231)
+|.++.+...++++++|+++|++++|++.+++.... +.........++.++++++..-...++..++.+++..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 999999999999999999999999999999987654 3333334444444444444433333333343444555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000905 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIYWMSPTIISS 516 (1231)
Q Consensus 438 ~~~~~~~~~~~~~~~d~r~~~~~E~L~gir~IK~~~~E~~f~~~i~~~r~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 516 (1231)
.++.++..++..+..+++.+.++|.++|+++||.|++|+.+.++.++..++..+...+...... ..............+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999988888777655443333322222 222233333333444
Q ss_pred HHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHH
Q 000905 517 VIFLGCAL-TGSAPLNASTIFTVLATLRSMGEPV 549 (1231)
Q Consensus 517 v~~~~~~l-~~~~~lt~~~~f~~l~~~~~l~~pl 549 (1231)
+.+.+..+ ..++.+++|.+++++.+...+..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 55556666 6778999999999999999998885
No 395
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.81 E-value=1.6e-19 Score=207.66 Aligned_cols=208 Identities=24% Similarity=0.394 Sum_probs=141.6
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCC
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~ 671 (1231)
...|.++|.++++.+ .+.++|..|++.+|+.++|+|++||||||+|++|.|--.|..-++. +...+|+.--=.
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d----~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID----FYLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc----hhhhcccCCCch
Confidence 356899999999864 5799999999999999999999999999999999998777655442 222222211101
Q ss_pred CC-HHHHHhcCCC------CCHHHHHHHHHH-------------hcchHH-----H-hcCC-CCCc-ccccCCCCcCChH
Q 000905 672 GS-IRDNILYGKP------MDKARYDKAIKA-------------CALDKD-----I-NNFD-HGDL-TEIGQRGLNLSGG 723 (1231)
Q Consensus 672 ~T-IreNI~fg~~------~~~~~~~~vl~~-------------~~L~~d-----i-~~lp-~G~~-T~IGe~G~~LSGG 723 (1231)
.+ ++.-+.+... +-.|+|.+.++. ..++.| + +.|+ .|.. ...-..-.+||||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 11 1111101100 001122221111 000000 0 0010 1222 2233456799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCc-EEEEEccCcchhhc-cCeEEEEeCCe-EeEec
Q 000905 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSE-VDRILVLEGGQ-ITQSG 800 (1231)
Q Consensus 724 QkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~k-TvIlvTH~l~~l~~-aD~Iivl~~G~-I~~~G 800 (1231)
||.|++|||||..+|++|||||||.+||.++-..+ ++-+... ++ |.++++|.-.+++. |-+|+.|++++ +...|
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wL-ee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWL-EEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH-HHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 99999999999999999999999999999988775 3334332 45 89999999999976 99999999999 78999
Q ss_pred ChHHHHhcC
Q 000905 801 NYQELLLAG 809 (1231)
Q Consensus 801 t~~eL~~~~ 809 (1231)
+|++.....
T Consensus 303 nydqy~~tr 311 (614)
T KOG0927|consen 303 NYDQYVKTR 311 (614)
T ss_pred CHHHHhhHH
Confidence 999988654
No 396
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.81 E-value=3.2e-17 Score=210.29 Aligned_cols=288 Identities=13% Similarity=0.117 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHH
Q 000905 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1231)
Q Consensus 938 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~ 1017 (1231)
...++++.++..++.+++..+....+.+...++..++++++++.|++||++.++|.++||++.| +.+.+.+...+...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~ 275 (710)
T TIGR03796 197 LLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTA 275 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHH
Confidence 3445555566667778888888889999999999999999999999999999999999999988 556666655555566
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHH
Q 000905 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1231)
Q Consensus 1018 ~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~ 1097 (1231)
..++.++..++++...+|++.++.+.++.++..+...+.+..+...+-....++...+++.|+++|+.|||+||.|+++.
T Consensus 276 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~ 355 (710)
T TIGR03796 276 LDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFF 355 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHH
Confidence 66666666777777777776555443333333332222222222222222334566899999999999999999999999
Q ss_pred HHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT---LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174 (1231)
Q Consensus 1098 ~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~---~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~ 1174 (1231)
+++.+..+...+..+.....+.|+..-.+++..+. ++..+.. ....+.++.|.+-..++++..+...+..+...+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~--~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~ 433 (710)
T TIGR03796 356 SRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGL--RVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFG 433 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777766665555544555544444443322 2222222 224678999998888999999999999999999
Q ss_pred HHHhhhchhHHHHHhhhcCCCCCCCCCCC--C-CCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1175 CYLANYIISVERIKQFMHIPPEPPAIVED--K-RPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1175 ~~lE~~m~SvERi~eY~~l~~E~~~~~~~--~-~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
.++.....+.||+.++.+.|+|.+....+ . ...+.++..|.|+|+||+++|.++
T Consensus 434 ~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~ 490 (710)
T TIGR03796 434 GTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL 490 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC
Confidence 99999999999999999888776422100 0 111125668999999999999753
No 397
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=2.4e-19 Score=192.67 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=112.7
Q ss_pred eeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCC-----cEE---EE-----cCeEEEEeCCCcCCCCCHHHHHh
Q 000905 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTV---NL-----YGSIAYVSQTSWIQSGSIRDNIL 679 (1231)
Q Consensus 613 L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~-----G~I---~v-----~g~iayv~Q~~~lf~~TIreNI~ 679 (1231)
++++++++.+| +.+|+||+|||||||+.+|.-.+.... |.. .+ .+.|.+..|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C--
Confidence 46778888887 889999999999999999874332211 210 00 124777777655444 2
Q ss_pred cCCCC---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCH
Q 000905 680 YGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDA 752 (1231)
Q Consensus 680 fg~~~---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl----y~~~~IllLDep~SalD~ 752 (1231)
+. ++++.+++++. .+ ...++..+||||||||++||||+ +.+|+++||||||+++|.
T Consensus 84 ---~~~~~~~~~~~~~l~~----------~~----~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 84 ---PLCVLSQDMARSFLTS----------NK----AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred ---cCCHHHHHHHHHHhcc----------cc----ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 22 12333333333 11 12355678999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHHHHhcC----CcEEEEEccCcchhhccCeEEEEeCCe
Q 000905 753 HTAATLFNECVMAALE----KKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1231)
Q Consensus 753 ~t~~~i~~~~i~~~l~----~kTvIlvTH~l~~l~~aD~Iivl~~G~ 795 (1231)
.....+.+ .+....+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 147 ~~~~~~~~-~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 147 VNRKISTD-LLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHH-HHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99888764 5555432 358999999999999999999998754
No 398
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.80 E-value=1.6e-20 Score=186.39 Aligned_cols=184 Identities=26% Similarity=0.418 Sum_probs=151.3
Q ss_pred ceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEEEEeCC-CcCCCCCHHHH
Q 000905 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQT-SWIQSGSIRDN 677 (1231)
Q Consensus 612 ~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~iayv~Q~-~~lf~~TIreN 677 (1231)
-|-.+|.++..||..-+|||+|||||||+..+.|..+ -+|+|.++| +=||.+|+ .-.|..-|-.-
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 4667899999999999999999999999999999876 589999999 36888876 55788889888
Q ss_pred HhcCCCCC--HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhc-------CCCEEEEeCCCC
Q 000905 678 ILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFS 748 (1231)
Q Consensus 678 I~fg~~~~--~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~-------~~~IllLDep~S 748 (1231)
+.+..|.. .+.+.++++.-++++ .+|..-..||||+-|||-||-.+++ +.+++|+|||-+
T Consensus 93 L~L~qP~~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~ 161 (248)
T COG4138 93 LTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN 161 (248)
T ss_pred hhhcCchHHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc
Confidence 88888752 244555555555543 2345567899999999999988886 346999999999
Q ss_pred CCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcc-hhhccCeEEEEeCCeEeEecChHHHHhc
Q 000905 749 AVDAHTAATLFNECVMAA-LEKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLA 808 (1231)
Q Consensus 749 alD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~-~l~~aD~Iivl~~G~I~~~Gt~~eL~~~ 808 (1231)
.||...+..+ ++.+... -.|.|+|+..|++. ++++||++..+..|++..+|.-+|++..
T Consensus 162 ~LDvAQ~~aL-drll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 162 SLDVAQQSAL-DRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred chhHHHHHHH-HHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 9999887754 5555444 37999999999996 7999999999999999999999999864
No 399
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.1e-19 Score=198.08 Aligned_cols=197 Identities=22% Similarity=0.399 Sum_probs=147.5
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCc-C
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-I 669 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~-l 669 (1231)
..+-++||+|.|+.. +|.+++++|-|.--..+|||||+|.||||||++|+|.++|+.|+.+-+- +||+-.|+.- -
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 456789999999753 6899999999999999999999999999999999999999999987665 5888888643 1
Q ss_pred --CCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 000905 670 --QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747 (1231)
Q Consensus 670 --f~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~ 747 (1231)
-..|--|-+.-+-..+-++-++.+-..+|..- -.|. +-..||||||.||+||--.++.|||+||||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 23355555532222233334455555554321 1221 34579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccC-eEEEEeCCeEeE-ecChHH
Q 000905 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD-RILVLEGGQITQ-SGNYQE 804 (1231)
Q Consensus 748 SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD-~Iivl~~G~I~~-~Gt~~e 804 (1231)
.+||.++-..+ .++|+.. +-.||+|||.-..+...| ...|+++-.|-+ .|.+++
T Consensus 733 NNLDIESIDAL-aEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 733 NNLDIESIDAL-AEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CCcchhhHHHH-HHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999987765 3566554 457999999999988877 455666655544 344443
No 400
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.80 E-value=6.8e-17 Score=200.43 Aligned_cols=282 Identities=12% Similarity=0.037 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHH
Q 000905 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1231)
Q Consensus 937 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~ 1016 (1231)
+++.+++++++..++.+++.+.....+.+...+++.++++++++.|.+||++.++|+++||+++|++.++..+...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455566666677777788888888899999999999999999999999999999999999999999998777666666
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHH-HHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhcccc
Q 000905 1017 AASGTELLAIIGIMTFVTWQVLVVA---IFAMVAVR-FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092 (1231)
Q Consensus 1017 ~~~~~~~l~~i~vi~~~~~~~~~~~---ipl~~~~~-~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~ 1092 (1231)
+...+.++..++++....|.+.+++ +|+.++.. +..++..+..++.+. ..+-..+++.|+++|+.+||+|+.
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~g~~~ik~~~~ 201 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWA----ALSRLSGHFLDRLRGLPTLKLFGR 201 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCHHHHHHccc
Confidence 6666666666666666777654432 33332222 223332233333322 234567899999999999999999
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHH
Q 000905 1093 VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLS 1171 (1231)
Q Consensus 1093 ~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a-~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~v 1171 (1231)
|+++.+++.+..+...+..+.....+.|...-.++++.+..+... +.......+.++.|.+-..++|+..+...+..+.
T Consensus 202 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~ 281 (529)
T TIGR02857 202 AKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLG 281 (529)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887776665554444444554444444443322221 1111223677888888888888888988999999
Q ss_pred HHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1172 RWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1172 r~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
..+.++.....|.||+.++.+.|+|.+. . ++...|..|+|+|+||+++|.+
T Consensus 282 ~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~--~~~~~~~~~~i~~~~v~f~y~~ 332 (529)
T TIGR02857 282 ADYHARADGVAAAEALFAVLDAPRPLAG---K--APVTAAPAPSLEFSGLSVAYPG 332 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCC---C--cCCCCCCCCeEEEEEEEEECCC
Confidence 9999999999999999999876544321 1 1112344579999999999965
No 401
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.80 E-value=9e-19 Score=201.19 Aligned_cols=205 Identities=21% Similarity=0.342 Sum_probs=168.2
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g------------- 658 (1231)
+..++++|++..= +.+.+.++||||++++||.++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|
T Consensus 255 ~~vL~V~~L~v~~--~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKD--RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeec--CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 4457888888753 2235789999999999999999999999999999999999999999999998
Q ss_pred --eEEEEeCCCc----CCCCCHHHHHhcCCCC----------CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCCh
Q 000905 659 --SIAYVSQTSW----IQSGSIRDNILYGKPM----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 659 --~iayv~Q~~~----lf~~TIreNI~fg~~~----------~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSG 722 (1231)
.+||||.|-. ...-|+.||+.++.-. +...+.+..+.--=+-|+. +.|-++. -.+|||
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr--~~~~~~~----a~~LSG 406 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR--APSPDAP----ARSLSG 406 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc--CCCCCcc----hhhcCC
Confidence 3899999874 6788999999876532 3344444333322222333 5555544 457999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcch-hhccCeEEEEeCCeEeEecC
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~-l~~aD~Iivl~~G~I~~~Gt 801 (1231)
|+.||+-+||-+.++|+++|...||-+||....+.|.++.+...-+|+.+++|+-.++. +..||+|.||.+|+|+...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999988777777789999999999986 57799999999999998776
Q ss_pred hHH
Q 000905 802 YQE 804 (1231)
Q Consensus 802 ~~e 804 (1231)
.++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 655
No 402
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=6e-17 Score=206.92 Aligned_cols=279 Identities=17% Similarity=0.220 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHH
Q 000905 939 GVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAA 1018 (1231)
Q Consensus 939 ~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~ 1018 (1231)
..++++.++..++.+++..+....+.+....+..++++++++.|++||++.++|.+++|+ +|++.+.+.+...+...+.
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~ 261 (694)
T TIGR01846 183 LAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVL 261 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence 344555556667778888888889999999999999999999999999999999999999 6999988776665555554
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHH
Q 000905 1019 SGTELLAIIGIMTFVTWQVLVVAIFAMVAV----RFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVD 1094 (1231)
Q Consensus 1019 ~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~----~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~ 1094 (1231)
..+.++..++++.+.+|++.++++..+.++ .++.+.+.+..++.. ...+...+++.|+++|+.|||+||.|+
T Consensus 262 ~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~g~~~ik~~~~e~ 337 (694)
T TIGR01846 262 DLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKF----ERSAAATSFLVESVTGIETIKATATEP 337 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHcccCH
Confidence 444444455666667777655443222222 223333333233222 234566799999999999999999999
Q ss_pred HHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHH
Q 000905 1095 RFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL---FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLS 1171 (1231)
Q Consensus 1095 ~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~---~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~v 1171 (1231)
++.+++.+..+...+..+.....+.+...-.+++..+.. +..+... ...+.++.|.+-...+++..+...+..+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l--v~~g~it~G~lia~~~l~~~~~~pl~~l~ 415 (694)
T TIGR01846 338 QFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHL--VIGGALSPGQLVAFNMLAGRVTQPVLRLA 415 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777766665555565555555443322 2222222 23678999988888899999999999999
Q ss_pred HHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1172 RWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1172 r~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
..+.+++....+.||+.++.+.|+|.+.. +..+.+ +..|.|+|+||+++|.++
T Consensus 416 ~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~--~~~~~i~~~~vsf~y~~~ 468 (694)
T TIGR01846 416 QLWQDFQQTGIALERLGDILNSPTEPRSA--GLAALP--ELRGAITFENIRFRYAPD 468 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCC--CCCCeEEEEEEEEEcCCC
Confidence 99999999999999999999888775421 111111 236899999999999764
No 403
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=1.1e-16 Score=204.41 Aligned_cols=279 Identities=19% Similarity=0.239 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHH
Q 000905 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1231)
Q Consensus 938 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~ 1017 (1231)
..+++++.++..++.+++.......+.+...++..++++++++.|++||++.++|.++||++ |++.+.+.+...+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~ 257 (686)
T TIGR03797 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTL 257 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 34455556666777788888888889999999999999999999999999999999999997 78888777666555544
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccH
Q 000905 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAM----VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV 1093 (1231)
Q Consensus 1018 ~~~~~~l~~i~vi~~~~~~~~~~~ipl~----~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~ 1093 (1231)
...+.++..++++...+|++.++++.++ ++..+.++...+..++.++.+ +...+++.|+++|+.|||+|+.|
T Consensus 258 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~gi~~ik~~~~e 333 (686)
T TIGR03797 258 LSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELS----GKISGLTVQLINGISKLRVAGAE 333 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHccHHHHHHhccc
Confidence 4444455556666666776654433222 223334555555555555543 45689999999999999999999
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHH
Q 000905 1094 DRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL---FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFL 1170 (1231)
Q Consensus 1094 ~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~---~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~ 1170 (1231)
+++.+++.+..+...+..+.....+.|......++..+.. +..+... ...+.++.|.+-...+++..+...+..+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l--v~~g~ltiG~lva~~~l~~~~~~pl~~l 411 (686)
T TIGR03797 334 NRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISL--LGGAGLSLGSFLAFNTAFGSFSGAVTQL 411 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888887777666666666655554433222 2222222 2467788888777788888889999999
Q ss_pred HHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1171 SRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1171 vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
...+.++....++.||+.++.+.|+|.+. +..++ .+..|.|+|+||+++|+++
T Consensus 412 ~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvsf~Y~~~ 464 (686)
T TIGR03797 412 SNTLISILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVTFRYRPD 464 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEEEEcCCC
Confidence 99999999999999999999988777542 11111 2356899999999999754
No 404
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.79 E-value=1.3e-16 Score=199.99 Aligned_cols=284 Identities=17% Similarity=0.162 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHH
Q 000905 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1231)
Q Consensus 938 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~ 1017 (1231)
+.+++++.++..++.+++.++....+.+....+...+++++++.|.++|+....|+++||+++|++.++......+..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~ 140 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMAL 140 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555666777777778889999999999999999999999999999999999999999887777777767
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccH
Q 000905 1018 ASGTELLAIIGIMTFVTWQVLVVAI---FAMVA-VRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV 1093 (1231)
Q Consensus 1018 ~~~~~~l~~i~vi~~~~~~~~~~~i---pl~~~-~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~ 1093 (1231)
...+.+++.++++....|++.++++ |+.++ ..+..+.+.+.+++.+ ..+....+++.|+++|+.+||+|+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~~ik~~~~~ 216 (576)
T TIGR02204 141 RNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQ----DRIADAGSYAGETLGAIRTVQAFGHE 216 (576)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCcHHHHHhccC
Confidence 7777777777777777777554432 32222 2223344433344433 34556789999999999999999999
Q ss_pred HHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHH
Q 000905 1094 DRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1231)
Q Consensus 1094 ~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~-a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr 1172 (1231)
+++.+++.+..+..............|+..-..++..+...+. .+.......+.++.|.+.....|+..+...+..+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~ 296 (576)
T TIGR02204 217 DAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSE 296 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887666655444444555444333332211111 111112236788999999999999999999999999
Q ss_pred HHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1173 ~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
.+.++.....|+||+.++.+.++|.+... ...+..+|..+.|+|+||+++|.+
T Consensus 297 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~ 349 (576)
T TIGR02204 297 VWGELQRAAGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPA 349 (576)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEEEECCC
Confidence 99999999999999999988766532111 111233566789999999999964
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.1e-19 Score=204.28 Aligned_cols=192 Identities=23% Similarity=0.376 Sum_probs=157.7
Q ss_pred CcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC--eEEEEeCCCcCC
Q 000905 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670 (1231)
Q Consensus 593 ~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g--~iayv~Q~~~lf 670 (1231)
..+++.+|+|.|++++. +.++++|+++..-+.+++||++|+||||+++++.|+..|..|.+.+.+ +|+|-.|...=+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~ 439 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDF 439 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhH
Confidence 46899999999987643 799999999999999999999999999999999999999999998887 699999974322
Q ss_pred -CCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000905 671 -SGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1231)
Q Consensus 671 -~~TIreNI~fg~~---~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep 746 (1231)
+-.+..==.+-+. -.+++|++.+..-||..++..-+ -..||||||-||++|-....+|.+|+||||
T Consensus 440 l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLVLDEP 509 (582)
T KOG0062|consen 440 LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLVLDEP 509 (582)
T ss_pred HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEEecCC
Confidence 2222111111111 27899999999999988876422 256999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEeE
Q 000905 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1231)
Q Consensus 747 ~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~ 798 (1231)
|..||.++-..+- ++++.. +--||+|||+.++++. |+.+.+.+||++..
T Consensus 510 TNhLD~dsl~AL~-~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 510 TNHLDRDSLGALA-KALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CccccHHHHHHHH-HHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999876653 344332 3479999999999975 99999999999975
No 406
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=1.6e-16 Score=199.74 Aligned_cols=288 Identities=12% Similarity=0.039 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHH
Q 000905 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1231)
Q Consensus 938 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~ 1017 (1231)
+.+++++.++..++.+++.++....+.+....+..++++++++.|++||+..++|.++||+++|++.++..+...+..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~ 145 (588)
T PRK11174 66 FILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMA 145 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445555556666777777778888889999999999999999999999999999999999999999988777777777
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHH
Q 000905 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1231)
Q Consensus 1018 ~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~ 1097 (1231)
..++..++.++++...+|.+.++++..+.+...+...+.+..++..+-.....+-..+++.|+++|+.+||+|+.|+++.
T Consensus 146 ~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 225 (588)
T PRK11174 146 LAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAET 225 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHH
Confidence 77777777777777777776444322222222222233232333333233345667899999999999999999999999
Q ss_pred HHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcChhHH---------HHHHHHHHHHHHHHH
Q 000905 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLV---------GLSLSYAFTLTGTQV 1168 (1231)
Q Consensus 1098 ~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~~v~~~~~~~~~g~~---------Gl~lsyal~l~~~l~ 1168 (1231)
+++.+..+...+......-...+...-..++..+.+++..++......+.++.|.+ -+++.++..+...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~ 305 (588)
T PRK11174 226 ESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLR 305 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHH
Confidence 99988887766655443333333333333333322211111111111244554432 122345566777788
Q ss_pred HHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1169 FLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1169 ~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
.+...+.++.....|.+|+.+..+.|+|++.. +..+. .-|..|+|+|+||++.|.++
T Consensus 306 ~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~-~~~~~~~i~~~~vsf~~~~~ 362 (588)
T PRK11174 306 DLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL-ASNDPVTIEAEDLEILSPDG 362 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc-CCCCCceEEEEeeEEeccCC
Confidence 88888999999999999999999877654321 11111 11346789999999888654
No 407
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.78 E-value=1.9e-16 Score=202.50 Aligned_cols=276 Identities=16% Similarity=0.140 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHH
Q 000905 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1231)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~ 1020 (1231)
++++.++..++.+++..+....+.+...++..++++++++.|++| ++.++|.+++|+ +|++.+.+.+...+...+..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~ 270 (694)
T TIGR03375 193 VALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDL 270 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Confidence 344445566777788888888899999999999999999999998 789999999999 799999887766655555555
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHH
Q 000905 1021 TELLAIIGIMTFVTWQVLVVAI---FAMV-AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1231)
Q Consensus 1021 ~~~l~~i~vi~~~~~~~~~~~i---pl~~-~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f 1096 (1231)
+.++..++++.+.+|++.++.+ |+.+ +.+++++.+.+..++..+ ..+...+++.|+++|+.|||+|+.|+++
T Consensus 271 ~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 346 (694)
T TIGR03375 271 PFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMR----ESAQRNAVLVESLSGLETIKALNAEGRF 346 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHccccHHH
Confidence 5555555666666776544432 3322 223345555444544443 4456789999999999999999999999
Q ss_pred HHHHHHHhhhhhchHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHH
Q 000905 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEAL---QNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRW 1173 (1231)
Q Consensus 1097 ~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i---~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~ 1173 (1231)
.+++.+..+...+..+.....+.+...-.+++ +.+.++..+...+ ..+.++.|.+-..++|...+...+..+...
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v--~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~ 424 (694)
T TIGR03375 347 QRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLI--SDGELTMGGLIACVMLSGRALAPLGQLAGL 424 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888776665554433333332222222 2222223333222 367899998888889999999999999999
Q ss_pred HHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1174 ~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
+.++....+|+||+.++.+.|+|.+.. ..+.+..+..|.|+|+||+++|.+
T Consensus 425 ~~~~~~~~~~~~ri~~il~~~~e~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~ 475 (694)
T TIGR03375 425 LTRYQQAKTALQSLDELMQLPVERPEG---TRFLHRPRLQGEIEFRNVSFAYPG 475 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCCCCCccceEEEEEEEEEeCC
Confidence 999999999999999999888775421 111112245789999999999964
No 408
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=2.7e-16 Score=196.38 Aligned_cols=283 Identities=12% Similarity=0.049 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHH
Q 000905 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1231)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~ 1020 (1231)
..+++++..++.++..++....+.+....+..++++++++.|++||++.+.|.+++|+++|++.++..+...+..++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666667777788889999999999999999999999999999999999999999988877777777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHH
Q 000905 1021 TELLAIIGIMTFVTWQVLVVA-IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1231)
Q Consensus 1021 ~~~l~~i~vi~~~~~~~~~~~-ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~ 1099 (1231)
+.+++++++++...|.+.+++ +++.+++..+..++.+..+...+-.....+-..+++.|+++|+.+||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 778888888888888776543 2221112222222323333333333344566778999999999999999999999999
Q ss_pred HHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcChhHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 000905 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYA-FTLTGTQVFLSRWYCYLA 1178 (1231)
Q Consensus 1100 ~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsya-l~l~~~l~~~vr~~~~lE 1178 (1231)
+.+..++..+..+.....+.+...-.+++..+.++....+......+.++.|.+-..+.|+ +.....+.-+...+.++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887776665554444444444444433322211111111124556666544444554 333445666677788888
Q ss_pred hhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1179 ~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
....|.||+.++.+.|+|.+.. +..++ -|..|.|+|+||+++|.+
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~ 350 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPD 350 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCC
Confidence 9999999999998877664211 11111 145689999999999965
No 409
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.78 E-value=2.5e-16 Score=197.77 Aligned_cols=277 Identities=14% Similarity=0.190 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHH
Q 000905 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022 (1231)
Q Consensus 943 ~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~ 1022 (1231)
++.++..++.+++..+....+.+....+..++++++++.|.++|+....|.+++|+++|++.+...+...+..++...+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 73 GLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666677777888889999999999999999999999999999999999999988777777777777778
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHH
Q 000905 1023 LLAIIGIMTFVTWQVLVVAIFAMVAV----RFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQ 1098 (1231)
Q Consensus 1023 ~l~~i~vi~~~~~~~~~~~ipl~~~~----~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~ 1098 (1231)
+++.++++....|++.++++..+.++ .+.++.+.+..++.+ ...+...+++.|.++|..+||+|+.++++.+
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~ 228 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQ----NTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCHHHHHHhCcCHHHHH
Confidence 88887777777777655433332222 233333333333333 3345678999999999999999999999999
Q ss_pred HHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 1099 NYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYL 1177 (1231)
Q Consensus 1099 ~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~-~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~l 1177 (1231)
++.+..+...+........+.|...-.++++.+.......+ ......+.+++|.+...+++..++...++.+...+.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~ 308 (582)
T PRK11176 229 RFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQF 308 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777766665556666655565544332222211 11224578999999999999999999999999999999
Q ss_pred hhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1178 ANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1178 E~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
.....+.||+.++.+.|+|.+. +.. ...|..|.|+|+||+++|+++
T Consensus 309 ~~~~~~~~ri~~~~~~~~~~~~---~~~--~~~~~~~~i~~~~vsf~y~~~ 354 (582)
T PRK11176 309 QRGMAACQTLFAILDLEQEKDE---GKR--VIERAKGDIEFRNVTFTYPGK 354 (582)
T ss_pred HHHHHHHHHHHHHhcCCCcCCC---CCc--CCCCCCCeEEEEEEEEecCCC
Confidence 9999999999999988766432 111 123556889999999999753
No 410
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.9e-19 Score=205.89 Aligned_cols=199 Identities=26% Similarity=0.388 Sum_probs=141.7
Q ss_pred CCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhC---CCcCCCcEEEEcCeEEEEeCCCc
Q 000905 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG---EIPKISGTVNLYGSIAYVSQTSW 668 (1231)
Q Consensus 592 ~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg---~~~~~~G~I~v~g~iayv~Q~~~ 668 (1231)
...|..+|.+.+|. ++..|++-|+++..|..+++||++|+|||||+++|.. ..-|.+-++ .|.--..-| .-
T Consensus 78 ~~Di~~~~fdLa~G---~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~--~g~~t~~~~-~~ 151 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG---GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV--RGDDTEALQ-SV 151 (582)
T ss_pred ccceeeeeeeeeec---chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhe--eccchHHHh-hh
Confidence 35688888888885 3579999999999999999999999999999999987 111111111 111111111 11
Q ss_pred CCCCCHHHHHhcCCC-C----C-HHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEE
Q 000905 669 IQSGSIRDNILYGKP-M----D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1231)
Q Consensus 669 lf~~TIreNI~fg~~-~----~-~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~Ill 742 (1231)
+-.+|-|.-.+.-.+ . + +|-|.+++.-.+..++....|- ..||||=|-|++||||+.++|||||
T Consensus 152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAlf~~pDlLL 221 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARALFAKPDLLL 221 (582)
T ss_pred hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHHhcCCCEEe
Confidence 223333333333221 0 2 2234447777777777776663 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEe-EecChHHHHhcC
Q 000905 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLLAG 809 (1231)
Q Consensus 743 LDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~-~~Gt~~eL~~~~ 809 (1231)
|||||..||...-..+- +-+... ..|+|+|+|+-.+|.. |..||.+++-++- ..|+|++..++.
T Consensus 222 LDEPTNhLDv~av~WLe-~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 222 LDEPTNHLDVVAVAWLE-NYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred ecCCcccchhHHHHHHH-HHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 99999999999888753 344333 3899999999999976 7889999887763 578888876543
No 411
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.78 E-value=3.2e-16 Score=196.00 Aligned_cols=268 Identities=11% Similarity=0.079 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 000905 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1231)
Q Consensus 954 ~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~ 1033 (1231)
+........+.+..+.+.+++++++++.|++||+++++|.+++|+++|++.+.......+...+..++.++..++++...
T Consensus 75 ~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (585)
T TIGR01192 75 LVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAM 154 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555566679999999999999999999999999999999988766666655566666666666666777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHH
Q 000905 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1231)
Q Consensus 1034 ~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~ 1113 (1231)
+|.+.++++.++.++.++.+.+.+..++..+......+...+++.|+++|+.|||+|+.++++.+++.+..+...+..+.
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (585)
T TIGR01192 155 DWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYP 234 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 88876665544455555555555555666555555667789999999999999999999999988888877765554443
Q ss_pred HHHHhHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHhh
Q 000905 1114 TNGVMEWLILRVEALQ---NLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQF 1190 (1231)
Q Consensus 1114 ~~~~~rWl~~rl~~i~---~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~eY 1190 (1231)
......+...-..++. .+.++..+... ...+.++.|.+-..++|+..+...+..+...+.++.....+.+|+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~--v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~ 312 (585)
T TIGR01192 235 VLDWWALASGLNRMASTISMMCILVIGTVL--VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDL 312 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221222111111222 22222222222 246788999888888999999999999999999999999999999998
Q ss_pred hcCCCCCCCCCCCCCCCCCCC-CCCeEEEEeEEEEecC
Q 000905 1191 MHIPPEPPAIVEDKRPPSSWP-FKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1191 ~~l~~E~~~~~~~~~pp~~WP-~~G~I~f~~v~~rYr~ 1227 (1231)
.+.++|.+. .. .++.+| ..|.|+|+||+++|.+
T Consensus 313 ~~~~~~~~~---~~-~~~~~~~~~~~i~~~~v~~~y~~ 346 (585)
T TIGR01192 313 EDSVFQREE---PA-DAPELPNVKGAVEFRHITFEFAN 346 (585)
T ss_pred HcCCccccC---Cc-cCCCCCCCCCeEEEEEEEEECCC
Confidence 776544321 11 111233 3678999999999964
No 412
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.77 E-value=5.4e-16 Score=193.31 Aligned_cols=280 Identities=20% Similarity=0.266 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHH
Q 000905 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1231)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~ 1020 (1231)
.++.++...++.++|++.+...+-|....+=.+.+++++|-|++||.+.++|.+++|++ |++.|-+.+..++...+..+
T Consensus 200 ~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~ 278 (709)
T COG2274 200 LLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDL 278 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45556777788899999999999999999999999999999999999999999999997 88888877777665555555
Q ss_pred HHHHHHHHHHHhhhHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHH
Q 000905 1021 TELLAIIGIMTFVTWQVLVVA---IFAMVA-VRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1231)
Q Consensus 1021 ~~~l~~i~vi~~~~~~~~~~~---ipl~~~-~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f 1096 (1231)
+.++..++++.+.+|++.+++ +|+.++ ..+.+.+..+..|+...-++ -..++..|++.|+.||++.+.|++|
T Consensus 279 ~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a----~~~s~lvE~i~gi~tvK~~~~e~~~ 354 (709)
T COG2274 279 LFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESA----EQQSFLVETIKGIETVKALAAEPRF 354 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHhhhHHHHHhhhhHHH
Confidence 555556666666666665443 333332 33445555555666554443 4478999999999999999999999
Q ss_pred HHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHH
Q 000905 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT---LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRW 1173 (1231)
Q Consensus 1097 ~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~---~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~ 1173 (1231)
..+.+++.++..+..+...-.+-|...-..++..+. ++..+...| ..+.++.|.+=-..+.+-.+++.+..++..
T Consensus 355 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lV--l~~~lTlG~LiAf~~l~~~f~~pi~~L~~~ 432 (709)
T COG2274 355 RSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILV--LEGELTLGQLVAFNMLAGYFISPITRLSQL 432 (709)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999888888777777776666655433 333333333 467788887766667777888999999999
Q ss_pred HHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCCCC
Q 000905 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHMELI 1230 (1231)
Q Consensus 1174 ~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~l~ 1230 (1231)
|.++...-++.||+.+-.+.|+|.+. ++.+...|+-+|+|+|+||++||+++-|
T Consensus 433 ~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~~nvsf~y~~~~~ 486 (709)
T COG2274 433 WTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVSFRYGPDDP 486 (709)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEEEEEEEEeCCCCc
Confidence 99999999999999999999999752 3336677888999999999999998854
No 413
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.77 E-value=6.7e-16 Score=192.14 Aligned_cols=284 Identities=12% Similarity=0.078 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHH
Q 000905 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019 (1231)
Q Consensus 940 vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~ 1019 (1231)
.++++.++..++.++..++....+.+..+.+..++++++++.|++||++.+.|++++|+++|++.++..+. .+..++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~ 136 (555)
T TIGR01194 58 SFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIA 136 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHH
Confidence 34455555666677777777888889999999999999999999999999999999999999999987664 35555566
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHH--HHH
Q 000905 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVD--RFF 1097 (1231)
Q Consensus 1020 ~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~--~f~ 1097 (1231)
.+.+++.++++++..|.+.++++.++.+...+.....+..++..+-.....+.+.+++.|++.|+.+||+|+.++ ...
T Consensus 137 ~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~ 216 (555)
T TIGR01194 137 LAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAH 216 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHH
Confidence 666666677777777776555333222222222211111122222122234577899999999999999999854 344
Q ss_pred HHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL-IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1231)
Q Consensus 1098 ~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~~v~-~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~ 1176 (1231)
+++.+..+...+...........+..-.+++.. +..++.++. ...+.++.|.+...+.|+..+...+..+...+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~ 293 (555)
T TIGR01194 217 GAIQESANNIADLHIIEILIFIAAENFGQLLFF---LLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPI 293 (555)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444443332221111111111122211 111111111 1125678888888888888999999999999999
Q ss_pred HhhhchhHHHHHhhhcCCCCCCCCC--C--CCC-CCCCCCCCCeEEEEeEEEEecC
Q 000905 1177 LANYIISVERIKQFMHIPPEPPAIV--E--DKR-PPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1177 lE~~m~SvERi~eY~~l~~E~~~~~--~--~~~-pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
++....|.||+.++.+.+.|++... + +.. +++..+..|+|+|+||+++|.+
T Consensus 294 ~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~ 349 (555)
T TIGR01194 294 LAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKA 349 (555)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCC
Confidence 9999999999999976433321111 1 111 0011234588999999999964
No 414
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=2.9e-18 Score=193.12 Aligned_cols=180 Identities=22% Similarity=0.368 Sum_probs=136.4
Q ss_pred eeeEeeCCCCCCCceeeEEEEe-----eCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCC-cCCCC
Q 000905 599 EGNFSWDPELAIPTLRGVNLDI-----KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS-WIQSG 672 (1231)
Q Consensus 599 ~~sf~y~~~~~~~~L~~inl~i-----~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~-~lf~~ 672 (1231)
+.-++|+.- ...+.+..|++ ..||.++++||+|-||||++++|.|.++|++|. ..+=+|+|=||-- --++|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCC
Confidence 344556532 23455666655 567789999999999999999999999999998 5556899999963 35999
Q ss_pred CHHHHHhcCCC--CCHHHHH-HHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000905 673 SIRDNILYGKP--MDKARYD-KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1231)
Q Consensus 673 TIreNI~fg~~--~~~~~~~-~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~Sa 749 (1231)
||++=+.-..+ +....|+ ++++--.|++-++ ..-.+||||+-||+|+|-||.++||+||||||.+-
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99987653322 4444443 3444455544333 34567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-cCeEEEEeC
Q 000905 750 VDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEG 793 (1231)
Q Consensus 750 lD~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~~l~~-aD~Iivl~~ 793 (1231)
||.+..- +..++|+... .++|.++|-|++-.+.. +|+++|.+.
T Consensus 486 LDvEqR~-~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 486 LDVEQRI-IVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ccHHHHH-HHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9987543 3456665543 68999999999998875 899999964
No 415
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=1.5e-15 Score=190.86 Aligned_cols=318 Identities=13% Similarity=0.108 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 000905 906 VLAQSGFVGLQAAATYWLAYAIQIP--KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPM 983 (1231)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm 983 (1231)
+++.++..++..+..+++..-.+.- +.....++.++.+++++..+..++..........+....+-.++++++++.|.
T Consensus 25 ~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 104 (588)
T PRK13657 25 AVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPL 104 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3334444445555555555433321 11111223333333333333333333333333444444555689999999999
Q ss_pred ccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000905 984 LFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELI 1063 (1231)
Q Consensus 984 ~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelk 1063 (1231)
++|++.+.|++++|+++|++.+.......+..++...+..++.++++....|++.++.+..++++..+..++.+..++.+
T Consensus 105 ~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~ 184 (588)
T PRK13657 105 AWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQ 184 (588)
T ss_pred HHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887655555555555555555555556667776655554444444555566655566665
Q ss_pred HHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000905 1064 RINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FLVL 1142 (1231)
Q Consensus 1064 Rl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~-~~v~ 1142 (1231)
+-.....+...+++.|+++|..+||+||.++++.+++.+..+...+..........|...-.+++..+..++..+ ....
T Consensus 185 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 264 (588)
T PRK13657 185 AAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAAL 264 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556678889999999999999999999999888888777766654443333333332222222221111111 1112
Q ss_pred hcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCC-CCCCeEEEEeE
Q 000905 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSW-PFKGRIELRQL 1221 (1231)
Q Consensus 1143 ~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~W-P~~G~I~f~~v 1221 (1231)
...|.+++|.+-..+.|+..+...+..+...+.++.....+.+|+.+..+.++|.+.. ++. + .+ +..|.|+|+||
T Consensus 265 v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~-~--~~~~~~~~I~~~~v 340 (588)
T PRK13657 265 VQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGA-I--DLGRVKGAVEFDDV 340 (588)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCC-C--CcCCCCCeEEEEEE
Confidence 2467899999988999999999999999999999999999999999987655443211 111 1 12 24578999999
Q ss_pred EEEecC
Q 000905 1222 KVSLHM 1227 (1231)
Q Consensus 1222 ~~rYr~ 1227 (1231)
+++|.+
T Consensus 341 sf~y~~ 346 (588)
T PRK13657 341 SFSYDN 346 (588)
T ss_pred EEEeCC
Confidence 999954
No 416
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=6.6e-16 Score=192.84 Aligned_cols=284 Identities=13% Similarity=0.174 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHH
Q 000905 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1231)
Q Consensus 937 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~ 1016 (1231)
++++++++.++..++.++...+....+.+...++..++++++++.|++||++.++|.++||+++|++.+.......+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444445555555655666667888899999999999999999999999999999999999999986555555555
Q ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHH
Q 000905 1017 AASGTELLAIIGIM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1231)
Q Consensus 1017 ~~~~~~~l~~i~vi-~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~ 1095 (1231)
+...+..+..++++ ....|.+.++.+..+.++.++.+.+.+..++..+-.....+...+++.|+++|+.+||+|+.+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 55544444444444 35666554433222222222222222222222222233456788999999999999999999999
Q ss_pred HHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHH
Q 000905 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEAL---QNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1231)
Q Consensus 1096 f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i---~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr 1172 (1231)
+.+++.+..+...+..+.....+.+...-...+ +.+.++..+... ...+.++.|.+-..+.|+..+...+..+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l--v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~ 275 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWM--VVNGSLTLGQLTSFVMYLGLMIWPMLALAW 275 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888776655544332222222111111 112222222222 246788999888888888888888888999
Q ss_pred HHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1173 ~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
.+.++....+|.||+.++.+.|+|.+.. +..++ +..|+|+|+|++++|.+
T Consensus 276 ~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~ 325 (569)
T PRK10789 276 MFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQ 325 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCC
Confidence 9999999999999999998876554311 11111 24588999999999975
No 417
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.75 E-value=1.3e-15 Score=190.36 Aligned_cols=283 Identities=17% Similarity=0.261 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHH
Q 000905 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1231)
Q Consensus 938 l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~ 1017 (1231)
+..++++.++..++.+...+...+.+.+....++.++.+++++.|++|||.++.|.+++|+++|++.++..+......+.
T Consensus 55 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~ 134 (567)
T COG1132 55 LLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVF 134 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHH
Confidence 33344444455555555556666667899999999999999999999999999999999999999999988777655455
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHH
Q 000905 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1231)
Q Consensus 1018 ~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~ 1097 (1231)
...+.+++.+++.....|.+.++.+....++.++...+.+..+...+-...+.+.+.+++.|+++|..+||+|+.+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~ 214 (567)
T COG1132 135 TSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDREL 214 (567)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHH
Confidence 45666777777777777776555443333333333444333455555555667889999999999999999999999776
Q ss_pred HHHHHHhhhhhchHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 1098 QNYLKLVDIDASLFFHTN---GVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174 (1231)
Q Consensus 1098 ~~~~~~lD~~~~~~~~~~---~~~rWl~~rl~~i~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~ 1174 (1231)
+++.+..+...+...... ....++...+..++...++..+...+ ..+.++.|.+...++|...+...+..+.+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~ 292 (567)
T COG1132 215 KRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLV--LSGSLTVGALAAFILYLLRLLTPILQLGEVV 292 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555444332211 22222323333333333333333332 3456889999999999999999999999999
Q ss_pred HHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1175 CYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1175 ~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
..++....|.||+.+..+.|+|... .. .+.++..|+|+|+||+++|.+
T Consensus 293 ~~~~~~~~a~~ri~~~l~~~~~~~~---~~--~~~~~~~~~I~f~~vsf~y~~ 340 (567)
T COG1132 293 SLLQRASAAAERLFELLDEEPEVED---PP--DPLKDTIGSIEFENVSFSYPG 340 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccC---CC--CCCCCCCCeEEEEEEEEEcCC
Confidence 9999999999999999887665321 11 115677899999999999985
No 418
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.75 E-value=3.6e-16 Score=174.48 Aligned_cols=216 Identities=16% Similarity=0.333 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHH
Q 000905 951 FVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIM 1030 (1231)
Q Consensus 951 ~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi 1030 (1231)
+...........+.+..+++++++++++++.|.+|||++++|+++||+++|++.+++.+...+..++......++.++++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 136 (275)
T PF00664_consen 57 FSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILL 136 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcc
Confidence 33334444567788999999999999999999999999999999999999999999999998888888888888888888
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhch
Q 000905 1031 TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASL 1110 (1231)
Q Consensus 1031 ~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~ 1110 (1231)
...+|.+.++.+....++.++..++.+..++..+-.....+...++++|.++|+++||+|+.|+++.+++.+..|+..+.
T Consensus 137 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 216 (275)
T PF00664_consen 137 FFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKA 216 (275)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 88899988887777777777778787888888777778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHH-hcCCCcChhHHHHHHHHHHHHHHH
Q 000905 1111 FFHTNGVMEWLILRVEALQNLTLFTAALF-LVL-IPRGYVAPGLVGLSLSYAFTLTGT 1166 (1231)
Q Consensus 1111 ~~~~~~~~rWl~~rl~~i~~~~~~~~a~~-~v~-~~~~~~~~g~~Gl~lsyal~l~~~ 1166 (1231)
.+.....+.|.....+++..+.......+ ... ...+.+++|.+-..++|...+++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 217 SFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 88888889999988888876643333222 233 457788999888888887776654
No 419
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.74 E-value=3.8e-18 Score=184.17 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=110.9
Q ss_pred eeeEEEEeeCCe-EEEEECcCCCChHHHHHHHh--------CCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCC
Q 000905 613 LRGVNLDIKWAQ-KIAVCGSVGAGKSSLLYAIL--------GEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKP 683 (1231)
Q Consensus 613 L~~inl~i~~Ge-~vaIvG~sGSGKSTLl~~Ll--------g~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~ 683 (1231)
..++|+++++|+ .++|+||+|||||||++.|. |.+.|....+ .++|+.|.--
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----~~~~~~~~~~--------------- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----SLPVFENIFA--------------- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----cCcCccEEEE---------------
Confidence 457899999995 69999999999999999998 6554433221 2344444311
Q ss_pred CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 000905 684 MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763 (1231)
Q Consensus 684 ~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i 763 (1231)
.+ |++..+.++-.++|+|+|||..+++++ .+|+++++|||++++|+...+.+....+
T Consensus 78 --------------------~l--g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l 134 (200)
T cd03280 78 --------------------DI--GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAIL 134 (200)
T ss_pred --------------------ec--CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 00 111123344468999999999999995 8999999999999999999888765555
Q ss_pred HHhc-CCcEEEEEccCcchhhccCeEEEEeCCeEeEe
Q 000905 764 MAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 764 ~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~ 799 (1231)
.... ++.|+|++||..+....+|++++|++|++...
T Consensus 135 ~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 135 EELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 5443 47899999999777788999999999999765
No 420
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=4.5e-17 Score=176.96 Aligned_cols=170 Identities=16% Similarity=0.187 Sum_probs=110.6
Q ss_pred eeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCc---E------EEEcC----eEEEEeC-CCcCCCCCHHHHHh
Q 000905 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---T------VNLYG----SIAYVSQ-TSWIQSGSIRDNIL 679 (1231)
Q Consensus 614 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G---~------I~v~g----~iayv~Q-~~~lf~~TIreNI~ 679 (1231)
+++.+++.+| +.+|+|++|||||||+.+|.-.+-.... + ..-.| .|-...+ +++ +|.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~--------~~~ 85 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPG--------NIQ 85 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCC--------ccc
Confidence 4556666555 7799999999999999988644421110 0 00011 1111111 111 133
Q ss_pred cCCC---CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCH
Q 000905 680 YGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDA 752 (1231)
Q Consensus 680 fg~~---~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl----y~~~~IllLDep~SalD~ 752 (1231)
+.++ .++++..+....... +-+..+|.+++.. ..+...||||||||+.+|+++ ..+|+++++||||++||+
T Consensus 86 ~~n~~~~~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~ 163 (213)
T cd03277 86 VDNLCQFLPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDP 163 (213)
T ss_pred cCCceEEEchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCH
Confidence 3333 255666666555433 4445677766543 456789999999998877554 589999999999999999
Q ss_pred HHHHHHHHHHHHHhc-C-C-cEEEEEccCcc-hhhccC--eEEEEeCCe
Q 000905 753 HTAATLFNECVMAAL-E-K-KTVILVTHQVE-FLSEVD--RILVLEGGQ 795 (1231)
Q Consensus 753 ~t~~~i~~~~i~~~l-~-~-kTvIlvTH~l~-~l~~aD--~Iivl~~G~ 795 (1231)
.+.+.+.+ .+.... + + .|+|++||++. .+..+| +|++|++|+
T Consensus 164 ~~~~~i~~-~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 164 TNERKVFD-MLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHHHH-HHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99998764 454443 3 4 48999999985 455565 788888886
No 421
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.72 E-value=1.2e-17 Score=184.49 Aligned_cols=189 Identities=18% Similarity=0.196 Sum_probs=139.3
Q ss_pred EEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHH---hcCCCCC---HHHHH
Q 000905 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNI---LYGKPMD---KARYD 690 (1231)
Q Consensus 617 nl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI---~fg~~~~---~~~~~ 690 (1231)
=+.+.+||.++|+|++|+|||||++.+.+.++...+.+. .+.++.+++-.=-..+.+.| .+..+.| ..++.
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~---~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~ 86 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY---LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQ 86 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE---EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHH
Confidence 357889999999999999999999999999887644332 24555666433222333343 1111211 12221
Q ss_pred ---HHHHHh------c-----chHHHhcCCCCCcccccCCCCcCChHH--------HHHHHHHHHHhcCCCEEEEeCCCC
Q 000905 691 ---KAIKAC------A-----LDKDINNFDHGDLTEIGQRGLNLSGGQ--------KQRIQLARAVYNDADIYLFDDPFS 748 (1231)
Q Consensus 691 ---~vl~~~------~-----L~~di~~lp~G~~T~IGe~G~~LSGGQ--------kQRIaLARAly~~~~IllLDep~S 748 (1231)
.+.+.+ + +-+++..+|+++++.+|+.|.++|||| |||+++||+..++++|.+| ||+
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~ 164 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATA 164 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeh
Confidence 111111 1 236788999999999999999999999 9999999999999999999 999
Q ss_pred CCCHHHHHH-HHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHHHhcCchHHHHHH
Q 000905 749 AVDAHTAAT-LFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817 (1231)
Q Consensus 749 alD~~t~~~-i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~~~~~~~~~l~~ 817 (1231)
++|+.++.. ++-+.+++ .++|.|++||+++...++|.|.||+.|++ |++++..++.|+.+..
T Consensus 165 ~~d~~~~~~~~i~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~ 227 (249)
T cd01128 165 LVDTGSRMDDVIFEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWL 227 (249)
T ss_pred eecCCCcccchHHHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHH
Confidence 999766654 33122222 57999999999999999999999999998 7888877777766654
No 422
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.72 E-value=9.4e-17 Score=163.74 Aligned_cols=201 Identities=22% Similarity=0.369 Sum_probs=152.8
Q ss_pred CCCcEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-----------
Q 000905 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659 (1231)
Q Consensus 591 ~~~~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~----------- 659 (1231)
.+.+|++.+..|+|+.. .|+.-|+|+++|.|....+||.+||||||||++|.|-.-...|.|.+.|+
T Consensus 10 ~~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ccceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 35689999999999754 38999999999999999999999999999999999988777799988772
Q ss_pred --EEEEeC----------CCcCCCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH
Q 000905 660 --IAYVSQ----------TSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 660 --iayv~Q----------~~~lf~~TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ 726 (1231)
..|..- +.-|+-+-=.+-..||-.. |.++-++.++.-.++ +-=+-..+|-|||.
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDId-------------l~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDID-------------LRWRMHKVSDGQRR 154 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheecc-------------ceEEEeeccccchh
Confidence 233221 2223323223445555443 445555554443221 22345678999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcchhhc-cCeEEEEeCCeEeEecChH
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1231)
Q Consensus 727 RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~ 803 (1231)
|+.|+--|++.=++++|||.|--||.-....+.+ -++.. -+|.|+|..||-..-+.. ..+++.|.+|+++..-+|+
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLe-FlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLE-FLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHH-HHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 9999999999999999999999999988877764 34432 479999999999987754 8899999999999866666
Q ss_pred HHHh
Q 000905 804 ELLL 807 (1231)
Q Consensus 804 eL~~ 807 (1231)
+..+
T Consensus 234 ~i~e 237 (291)
T KOG2355|consen 234 KIKE 237 (291)
T ss_pred hhhh
Confidence 6543
No 423
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=7.1e-17 Score=193.49 Aligned_cols=100 Identities=28% Similarity=0.546 Sum_probs=88.9
Q ss_pred cccCCCCcCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhccCe
Q 000905 712 EIGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDR 787 (1231)
Q Consensus 712 ~IGe~G~~LSGGQkQRIaLARAly~~~---~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~ 787 (1231)
.+|..-.+||||+.|||-||.-|.+++ -+|||||||.+|-.+--++++ +++..+ -+|.|||+|-|+++.++.||+
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIEHNLdVIk~AD~ 893 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIEHNLDVIKTADW 893 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecccceEeecCE
Confidence 468999999999999999999999988 899999999999999988876 456544 379999999999999999999
Q ss_pred EEEE------eCCeEeEecChHHHHhcCchH
Q 000905 788 ILVL------EGGQITQSGNYQELLLAGTAF 812 (1231)
Q Consensus 788 Iivl------~~G~I~~~Gt~~eL~~~~~~~ 812 (1231)
|+-| +.|+|+.+||++|+.+..+.|
T Consensus 894 IIDLGPeGG~~GG~iva~GTPeeva~~~~S~ 924 (935)
T COG0178 894 IIDLGPEGGDGGGEIVASGTPEEVAKVKASY 924 (935)
T ss_pred EEEcCCCCCCCCceEEEecCHHHHHhCccch
Confidence 9998 479999999999998754433
No 424
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.71 E-value=1e-16 Score=212.29 Aligned_cols=101 Identities=24% Similarity=0.382 Sum_probs=89.1
Q ss_pred CCCcccccCCCCcCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchh
Q 000905 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYND---ADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL 782 (1231)
Q Consensus 707 ~G~~T~IGe~G~~LSGGQkQRIaLARAly~~---~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l 782 (1231)
-||.+ +|+.-.+||||+.|||-||.-|.++ +.+|+|||||.+|+++.-+++.+ ++..+ -+|.|+|+|.|++..+
T Consensus 1688 LgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~~g~tvivieH~~~~i 1765 (1809)
T PRK00635 1688 LGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVSLGHSVIYIDHDPALL 1765 (1809)
T ss_pred CCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHH
Confidence 36664 6999999999999999999999976 78999999999999999988764 56554 4799999999999999
Q ss_pred hccCeEEEE------eCCeEeEecChHHHHhcC
Q 000905 783 SEVDRILVL------EGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 783 ~~aD~Iivl------~~G~I~~~Gt~~eL~~~~ 809 (1231)
+.||+|+-| +.|+|+.+||++|+.+..
T Consensus 1766 ~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1766 KQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 999999999 468999999999998654
No 425
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=3.8e-17 Score=205.60 Aligned_cols=195 Identities=23% Similarity=0.349 Sum_probs=158.5
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC---CCcEEEEcC----------eEEEEeCCCcCC-CCCHH
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG----------SIAYVSQTSWIQ-SGSIR 675 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~---~~G~I~v~g----------~iayv~Q~~~lf-~~TIr 675 (1231)
..+|+|++.-++||+.+.+.||.|||||||++++.|..+. ..|+|..+| .++|++|+.+-+ ..|+|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4689999999999999999999999999999999998764 356899888 499999987655 56999
Q ss_pred HHHhcCC-------CCC---HHHHHHHHHHhcchHHHhcCCCCCcccccCCC-CcCChHHHHHHHHHHHHhcCCCEEEEe
Q 000905 676 DNILYGK-------PMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFD 744 (1231)
Q Consensus 676 eNI~fg~-------~~~---~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G-~~LSGGQkQRIaLARAly~~~~IllLD 744 (1231)
|-+-|.. .+| +.++.++...-- --+-.|.+..||.||.+. ...|||||.||++|-++..++.++..|
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~--lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYL--LKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHH--HHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9998842 132 333332111111 112345678899999875 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEccCcc--hhhccCeEEEEeCCeEeEecChHHHHh
Q 000905 745 DPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVE--FLSEVDRILVLEGGQITQSGNYQELLL 807 (1231)
Q Consensus 745 ep~SalD~~t~~~i~~~~i~~~--l~~kTvIlvTH~l~--~l~~aD~Iivl~~G~I~~~Gt~~eL~~ 807 (1231)
|+|-+||+.|+-++. ++++.. .-+.|.++.=|+.+ .....|+|++|.+|+++.+|+.++.+.
T Consensus 286 e~t~GLDSsTal~ii-k~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQII-KALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccccHHHHHHHH-HHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999876 466553 35788888889876 578899999999999999999999874
No 426
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.9e-16 Score=179.57 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=67.7
Q ss_pred cCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCC
Q 000905 719 NLSGGQKQRIQLARAVYN----DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1231)
Q Consensus 719 ~LSGGQkQRIaLARAly~----~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G 794 (1231)
+||||||||++|||+++. +|++++||||+++||++..+.+. +.+....+++|+|+|||+++....||++++|++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSRSHQVLCITHLPQVAAMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence 599999999999997643 99999999999999999999876 4676666789999999999988999999999886
Q ss_pred e
Q 000905 795 Q 795 (1231)
Q Consensus 795 ~ 795 (1231)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 4
No 427
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.68 E-value=7e-14 Score=174.01 Aligned_cols=271 Identities=11% Similarity=0.066 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHH
Q 000905 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1231)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~ 1025 (1231)
++..++.++..++....+.+...++..++++++++.|++||+.++.|.++||+++|++.+...+. .+..++...+.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 59 LLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33344455666677777888999999999999999999999999999999999999998876433 34455666666777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccH---HHHHHHHHH
Q 000905 1026 IIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV---DRFFQNYLK 1102 (1231)
Q Consensus 1026 ~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~---~~f~~~~~~ 1102 (1231)
.++++....|.+.++.+..+.+...+..+..+..+...+-.....+...++++|.++|+.+|+ ++.+ +++.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 777777778877655433332222222222221111111112345677899999999999995 5443 456666666
Q ss_pred HhhhhhchHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHhc-CCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000905 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLT-LFTAALFLVLIP-RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180 (1231)
Q Consensus 1103 ~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~-~~~~a~~~v~~~-~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~ 1180 (1231)
..+...+..+.. .++......+..++ .+..++.++... .+....+.+++...+.+.+...+..+...+.++...
T Consensus 217 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 292 (547)
T PRK10522 217 DAQEYRHHIIRA----DTFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSA 292 (547)
T ss_pred HHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544333221 12222222222111 111221222111 111233334444444555667788888999999999
Q ss_pred chhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1181 m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
..|.||+.++.+.|+|++. ++..+++ ..|.|+|+||+++|+.
T Consensus 293 ~~a~~ri~~l~~~~~~~~~--~~~~~~~---~~~~i~~~~v~f~y~~ 334 (547)
T PRK10522 293 QVAFNKLNKLALAPYKAEF--PRPQAFP---DWQTLELRNVTFAYQD 334 (547)
T ss_pred HHHHHHHHHHhcccccccc--ccccccC---cCceEEEEEEEEEeCC
Confidence 9999999999765554321 1111111 2468999999999964
No 428
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.68 E-value=3e-16 Score=174.70 Aligned_cols=177 Identities=27% Similarity=0.336 Sum_probs=136.7
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCC--------CcCCCcEEEEcCe--EEEEeC--CCcCCCCCHHHH
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--------IPKISGTVNLYGS--IAYVSQ--TSWIQSGSIRDN 677 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~--------~~~~~G~I~v~g~--iayv~Q--~~~lf~~TIreN 677 (1231)
..+|+|+||+|++|+.++|+|+|||||||++++|+|. |.|++|.|.+.-+ -|.+|- +|-+=.-||.|.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 4689999999999999999999999999999999987 5789999887542 334444 344444466665
Q ss_pred HhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 000905 678 ILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757 (1231)
Q Consensus 678 I~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~ 757 (1231)
+. ..+-|..--.+++..++|.+-+- --.+-..||-|||-|..||+++-.+|.+++.||--|.||..|+..
T Consensus 476 l~-s~tGD~~~AveILnraGlsDAvl---------yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~r 545 (593)
T COG2401 476 LR-SKTGDLNAAVEILNRAGLSDAVL---------YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545 (593)
T ss_pred Hh-hccCchhHHHHHHHhhccchhhh---------hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHH
Confidence 42 22335455567788888765432 123445799999999999999999999999999999999999998
Q ss_pred HHHHHHHHhc--CCcEEEEEccCcchhhc--cCeEEEEeCCeEe
Q 000905 758 LFNECVMAAL--EKKTVILVTHQVEFLSE--VDRILVLEGGQIT 797 (1231)
Q Consensus 758 i~~~~i~~~l--~~kTvIlvTH~l~~l~~--aD~Iivl~~G~I~ 797 (1231)
+-.+ +.++. .+-|.+.||||.+.... =|+++.+.=|+..
T Consensus 546 VArk-iselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 546 VARK-ISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHH-HHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 7543 54443 68999999999999865 4899888766543
No 429
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.67 E-value=1.8e-16 Score=165.27 Aligned_cols=133 Identities=22% Similarity=0.290 Sum_probs=95.6
Q ss_pred EEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe--EEE-EeCCCcCCCCCHHHHHhcCCCCCHHHHHHHH
Q 000905 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAY-VSQTSWIQSGSIRDNILYGKPMDKARYDKAI 693 (1231)
Q Consensus 617 nl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~--iay-v~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl 693 (1231)
++.+.+|..++|+||+||||||+++++....-..+|.+..... .++ +|+..--+
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------- 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL----------------------- 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----------------------
Confidence 4445556799999999999999999976554444443332111 110 11111000
Q ss_pred HHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cC
Q 000905 694 KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN----DADIYLFDDPFSAVDAHTAATLFNECVMAA-LE 768 (1231)
Q Consensus 694 ~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~----~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~ 768 (1231)
..+. ..||||||||++|||++.. +|++++||||++++|++....+.+ .+... .+
T Consensus 72 ---------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~-~l~~~~~~ 130 (162)
T cd03227 72 ---------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAE-AILEHLVK 130 (162)
T ss_pred ---------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhc
Confidence 0011 1199999999999999986 789999999999999999998765 45443 34
Q ss_pred CcEEEEEccCcchhhccCeEEEEeC
Q 000905 769 KKTVILVTHQVEFLSEVDRILVLEG 793 (1231)
Q Consensus 769 ~kTvIlvTH~l~~l~~aD~Iivl~~ 793 (1231)
+.|+|++||+.+....+|+++.|+.
T Consensus 131 ~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 131 GAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred CCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 6899999999999999999999964
No 430
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.64 E-value=2.8e-13 Score=168.67 Aligned_cols=277 Identities=10% Similarity=0.018 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHH-HHHH
Q 000905 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF-SIVF 1015 (1231)
Q Consensus 937 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~-~l~~ 1015 (1231)
++.+++++.++..++.+++.++....+.+....+..++++++++.|++. .|..++++++|++.+...+.. .+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~ 122 (544)
T TIGR01842 48 LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFA 122 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444445555566667777777888888999999999999999999843 367789999999999876554 3334
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHH
Q 000905 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1231)
Q Consensus 1016 ~~~~~~~~l~~i~vi~~~~~~~~~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~ 1095 (1231)
++...+.++. ++++....|++.++++..+.+.+.+...+.+..+...+-.....+...+++.|+++|+.|||+|+.+++
T Consensus 123 ~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 201 (544)
T TIGR01842 123 FFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201 (544)
T ss_pred HHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHH
Confidence 4444443333 344556666654433211111112222211111222122223455667899999999999999999999
Q ss_pred HHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHHHHH
Q 000905 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEAL---QNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1231)
Q Consensus 1096 f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i---~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr 1172 (1231)
+.+++.+..++..+..+.......+...-..++ +.+.++..+.. ....|.+++|.+-..+.|+..+...+..+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~ 279 (544)
T TIGR01842 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY--LAIDGEITPGMMIAGSILVGRALAPIDGAIG 279 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888776555443322222222112222 22222222222 2246789999998889999999999999999
Q ss_pred HHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecC
Q 000905 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1173 ~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~ 1227 (1231)
.+.++.....|.||+.++.+.|+|.+. +..++ +.+|.|+|+|++++|++
T Consensus 280 ~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~ 328 (544)
T TIGR01842 280 GWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPG 328 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCC
Confidence 999999999999999999887666431 11111 24588999999999964
No 431
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.64 E-value=5e-16 Score=175.30 Aligned_cols=177 Identities=24% Similarity=0.372 Sum_probs=134.9
Q ss_pred eeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEE-----------E-----------
Q 000905 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------L----------- 656 (1231)
Q Consensus 599 ~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~-----------v----------- 656 (1231)
++.-+|..+ .+.|..+- ..++|+.++|+|++|-||||-++.|.|++.|.=|+-. .
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 455666543 24444433 3578999999999999999999999999999877642 1
Q ss_pred --cC------eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHH
Q 000905 657 --YG------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1231)
Q Consensus 657 --~g------~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRI 728 (1231)
+| ++-||.--|-.+.|+++|=+.--. ...+.+++++..+|.+-++ ..-..||||+-||+
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~d--e~g~~devve~l~L~nvl~-----------r~v~~LSGGELQr~ 222 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVD--ERGKFDEVVERLGLENVLD-----------RDVSELSGGELQRV 222 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhh--hcCcHHHHHHHhcchhhhh-----------hhhhhcCchHHHHH
Confidence 11 355555567888999998764322 2246777888887776544 34567999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-cCeEEEEe
Q 000905 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLE 792 (1231)
Q Consensus 729 aLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~-~kTvIlvTH~l~~l~~-aD~Iivl~ 792 (1231)
|||-|+.+++|+|++|||+|-||....-.. .+.++++.+ +|+||+|-|++..|.. +|.|-++-
T Consensus 223 aIaa~l~rdADvY~FDEpsSyLDi~qRl~~-ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 223 AIAAALLRDADVYFFDEPSSYLDIRQRLNA-ARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHhccCCEEEEcCCcccccHHHHHHH-HHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999999999999998765443 356777776 7999999999999976 78887774
No 432
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.62 E-value=1.7e-13 Score=173.14 Aligned_cols=324 Identities=6% Similarity=-0.091 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCchH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 902 LCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITSGI--LIGVYA----GVSTASAVFVYFRSFFAAHLGLKASKAFFSG 973 (1231)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~--~l~vy~----~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ 973 (1231)
+++.+++.++...+.+...++.....+.- .....+ ++..++ +++++..+..++...+......+..+++|++
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 177 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSK 177 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556666666665543321 111111 133333 3333334444444455556667788888888
Q ss_pred HHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Q 000905 974 FTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFVQ 1052 (1231)
Q Consensus 974 ~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~-~~~~~~~~~ipl~~~~~~~~ 1052 (1231)
.+++...-+++|||. ++|.+++|+++|++.+...+...+..++..++.+++.++++.. ..|.+.++++....+..++.
T Consensus 178 ~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~ 256 (659)
T TIGR00954 178 YLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVL 256 (659)
T ss_pred HhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 888888888999997 8899999999999999988888888888888887776666554 66766555444444444455
Q ss_pred HHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 000905 1053 RYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT 1132 (1231)
Q Consensus 1053 ~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~ 1132 (1231)
+++.+..+.+.+-.....+-..++++|+++|..+|++|+.+++..+++.+..+...+..+.....+.|+..-.+++....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555555555545555567789999999999999999999998888888888777766666666666666655554321
Q ss_pred -----HHHHHHHHHHhcC----CCcChhH-HHHHHHH---HHHHHHHHHHHHHHHHHHhhhchhHHHHHhhhcCCCCCCC
Q 000905 1133 -----LFTAALFLVLIPR----GYVAPGL-VGLSLSY---AFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1231)
Q Consensus 1133 -----~~~~a~~~v~~~~----~~~~~g~-~Gl~lsy---al~l~~~l~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~ 1199 (1231)
.+.++.. ++... +.++.|. +|..++| ..++...+..++..+.++.....+.|||.|+.+.++|...
T Consensus 337 ~~~~~~~~~g~~-~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 337 WSAVGLVAVSIP-IFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHH-HHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111 12112 4566664 4544444 5566788889999999999999999999999865433110
Q ss_pred ------CCCC--------CCCCCCC------CCCCeEEEEeEEEEecC
Q 000905 1200 ------IVED--------KRPPSSW------PFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1200 ------~~~~--------~~pp~~W------P~~G~I~f~~v~~rYr~ 1227 (1231)
..++ .+++..+ ...|.|+|+|++++|..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~ 463 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN 463 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC
Confidence 0000 0000011 13578999999999953
No 433
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=1e-15 Score=167.31 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=108.6
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEE-EEeCCCcCCCCCHHHHHhcCCCCCHHH
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA-YVSQTSWIQSGSIRDNILYGKPMDKAR 688 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~ia-yv~Q~~~lf~~TIreNI~fg~~~~~~~ 688 (1231)
+++.+|+++++++|+.++|+||+||||||+++.+.- +.+-.++| |||.+...+. +.|+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------~~~la~~g~~vpa~~~~~~--~~~~----------- 75 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------IVLMAQIGCFVPCDSADIP--IVDC----------- 75 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------HHHHHHhCCCcCcccEEEe--ccce-----------
Confidence 478999999999999999999999999999998861 11112233 5554431110 1111
Q ss_pred HHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHH
Q 000905 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV--YNDADIYLFDDP---FSAVDAHTAATLFNECV 763 (1231)
Q Consensus 689 ~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAl--y~~~~IllLDep---~SalD~~t~~~i~~~~i 763 (1231)
+++..++ ++. ...++|+|++|+..+|+++ ..+|+++||||| |+++|.......+-+.+
T Consensus 76 ---il~~~~l---------~d~-----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l 138 (222)
T cd03285 76 ---ILARVGA---------SDS-----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYI 138 (222)
T ss_pred ---eEeeecc---------ccc-----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 1111122 111 1357999999999999999 899999999999 99999887754332223
Q ss_pred HHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecC
Q 000905 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 764 ~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt 801 (1231)
.. .+++|+|++||..+....||++..+++|++...++
T Consensus 139 ~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 139 AT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred Hh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 22 24789999999756667799999999999987653
No 434
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=1.2e-14 Score=164.35 Aligned_cols=176 Identities=18% Similarity=0.246 Sum_probs=111.9
Q ss_pred eeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC----------------CcEE----------------------
Q 000905 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----------------SGTV---------------------- 654 (1231)
Q Consensus 613 L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~----------------~G~I---------------------- 654 (1231)
+++.++++.+| +++|+|++||||||++.+|.-..... +..|
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34567777776 68999999999999999875433211 1111
Q ss_pred ---EEcC--------------eEEEEeCCCcCCCCCHHHHHhc----CCCCCH------HHHHHHHHHhcchHHHhcCCC
Q 000905 655 ---NLYG--------------SIAYVSQTSWIQSGSIRDNILY----GKPMDK------ARYDKAIKACALDKDINNFDH 707 (1231)
Q Consensus 655 ---~v~g--------------~iayv~Q~~~lf~~TIreNI~f----g~~~~~------~~~~~vl~~~~L~~di~~lp~ 707 (1231)
.+|| .|.+.|++..|+.++-.+-..| +.+.++ ++|+++++. ...+..-|+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~---~~~~~~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQ---RNALLKGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---HHHHhCCCC
Confidence 1222 2555566666664433332222 112222 123333221 122222577
Q ss_pred CCcccccCCCCc----CChHHHHHHHHHHHH---------hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Q 000905 708 GDLTEIGQRGLN----LSGGQKQRIQLARAV---------YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774 (1231)
Q Consensus 708 G~~T~IGe~G~~----LSGGQkQRIaLARAl---------y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIl 774 (1231)
.|+..+.-++.+ +|+|||||+++||++ +++|+++||||||++||++..+.+.+ .+... + .+++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~-~l~~~--~-q~ii 243 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLD-AIEGR--V-QTFV 243 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHH-HhhcC--C-CEEE
Confidence 777776555544 899999999999997 47999999999999999999988764 44332 2 4556
Q ss_pred EccCcchhhc-c---CeEEEEeCCeE
Q 000905 775 VTHQVEFLSE-V---DRILVLEGGQI 796 (1231)
Q Consensus 775 vTH~l~~l~~-a---D~Iivl~~G~I 796 (1231)
++|+...+.. | ++|+.+++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 244 TTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EeCCchhccchhccCccEEEEeCcEE
Confidence 6665554433 4 78999999987
No 435
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.58 E-value=8.3e-15 Score=149.77 Aligned_cols=200 Identities=22% Similarity=0.332 Sum_probs=148.8
Q ss_pred EEeeeEeeCC-CCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEE-----Ec-------------
Q 000905 597 IQEGNFSWDP-ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----LY------------- 657 (1231)
Q Consensus 597 ~~~~sf~y~~-~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~-----v~------------- 657 (1231)
++|.+..... .+...+.+++|++...||.-++||.||||||-+.++|.|-..- .=.|. ++
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhhcCChHHhh
Confidence 3444444332 2234579999999999999999999999999999999997642 22222 21
Q ss_pred ----CeEEEEeCCCcCCC---CC----HHHHHhc----CC---C--CCHHHHHHHHHHhcch--HHHh-cCCCCCccccc
Q 000905 658 ----GSIAYVSQTSWIQS---GS----IRDNILY----GK---P--MDKARYDKAIKACALD--KDIN-NFDHGDLTEIG 714 (1231)
Q Consensus 658 ----g~iayv~Q~~~lf~---~T----IreNI~f----g~---~--~~~~~~~~vl~~~~L~--~di~-~lp~G~~T~IG 714 (1231)
..|+.+.|+|.-.- .+ +-+||-+ |+ . ..+.+-.+.+..+|.+ +||. +-|
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-------- 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-------- 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc--------
Confidence 25999999997432 22 3456532 11 1 2345556677788874 4554 333
Q ss_pred CCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--hcCCcEEEEEccCcchhhc-cCeEEEE
Q 000905 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA--ALEKKTVILVTHQVEFLSE-VDRILVL 791 (1231)
Q Consensus 715 e~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~--~l~~kTvIlvTH~l~~l~~-aD~Iivl 791 (1231)
-.|--|+-|+|.||-|+..+|+++|-||||.++|+.|..+||. .+.. .-.|.|+++++|++..+.+ ||+|-||
T Consensus 157 ---~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~Vl 232 (330)
T COG4170 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVL 232 (330)
T ss_pred ---chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEE
Confidence 2345577889999999999999999999999999999999984 4433 3468999999999998865 9999999
Q ss_pred eCCeEeEecChHHHHhcC
Q 000905 792 EGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 792 ~~G~I~~~Gt~~eL~~~~ 809 (1231)
--|+-+|.+.-+++++..
T Consensus 233 YCGQ~~ESa~~e~l~~~P 250 (330)
T COG4170 233 YCGQTVESAPSEELVTMP 250 (330)
T ss_pred EecccccccchhHHhcCC
Confidence 999999999999998764
No 436
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.55 E-value=2.8e-15 Score=162.14 Aligned_cols=149 Identities=12% Similarity=0.095 Sum_probs=103.2
Q ss_pred EEEEeeCCeEEEEECcCCCChHHHHHHHhC-CCcCCCcEEEE--cCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHH
Q 000905 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNL--YGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKA 692 (1231)
Q Consensus 616 inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg-~~~~~~G~I~v--~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~v 692 (1231)
.++++.+|++++|+||+|||||||+++|.+ .+....|...- +..++|..|
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dq--------------------------- 74 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDR--------------------------- 74 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCE---------------------------
Confidence 355566899999999999999999999993 33333332110 011222111
Q ss_pred HHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcE
Q 000905 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKT 771 (1231)
Q Consensus 693 l~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kT 771 (1231)
.+..++..+ .+-++-..+++++|| ++.+.+...+|+++|||||++++|+.....+....+.... ++.|
T Consensus 75 --------i~~~~~~~d--~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~ 143 (202)
T cd03243 75 --------IFTRIGAED--SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR 143 (202)
T ss_pred --------EEEEecCcc--cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 112222221 122334566777765 7777788899999999999999999988776544444332 4889
Q ss_pred EEEEccCcchhhccCeEEEEeCCeEeEecCh
Q 000905 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 772 vIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~ 802 (1231)
+|++||+.+....+|++..+++|++.+.++.
T Consensus 144 vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 144 TLFATHFHELADLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred EEEECChHHHHHHhhcCCCeEEEEEEEEecC
Confidence 9999999999999999999999999887754
No 437
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.53 E-value=1.3e-14 Score=156.00 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=93.8
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcC-CCcEEEEcCeEEEEeCCCcCC-CCCHHHHHhcCCCCCH-
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYGSIAYVSQTSWIQ-SGSIRDNILYGKPMDK- 686 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~-~~G~I~v~g~iayv~Q~~~lf-~~TIreNI~fg~~~~~- 686 (1231)
+++++|++++. |+.++|+||+|||||||+++|.|.... ..|. .+.+ -.++.|..-+| ..|++||+.+|.....
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a-~~~~~q~~~l~~~~~~~d~l~~~~s~~~~ 89 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCA-SSFELPPVKIFTSIRVSDDLRDGISYFYA 89 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEec-CccCcccceEEEeccchhccccccChHHH
Confidence 46788887765 799999999999999999999875531 2232 1222 13556644444 5699999998864322
Q ss_pred --HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000905 687 --ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764 (1231)
Q Consensus 687 --~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~ 764 (1231)
++..++++..++ .+|+++|+|||++++|+.....+....+.
T Consensus 90 e~~~~~~iL~~~~~-------------------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~ 132 (199)
T cd03283 90 ELRRLKEIVEKAKK-------------------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLK 132 (199)
T ss_pred HHHHHHHHHHhccC-------------------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHH
Confidence 223333332221 79999999999999999988776544444
Q ss_pred Hh-cCCcEEEEEccCcchhhcc
Q 000905 765 AA-LEKKTVILVTHQVEFLSEV 785 (1231)
Q Consensus 765 ~~-l~~kTvIlvTH~l~~l~~a 785 (1231)
.. .++.|+|++||+++.+...
T Consensus 133 ~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 133 FLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHCCCEEEEEcCcHHHHHhh
Confidence 33 2578999999998876443
No 438
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=3.4e-14 Score=181.53 Aligned_cols=95 Identities=27% Similarity=0.452 Sum_probs=84.7
Q ss_pred ccCCCCcCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhccCeEE
Q 000905 713 IGQRGLNLSGGQKQRIQLARAVYNDA--DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRIL 789 (1231)
Q Consensus 713 IGe~G~~LSGGQkQRIaLARAly~~~--~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~aD~Ii 789 (1231)
.+....+|||||+|||.||||+.++| ++|||||||++||++..++++ +.++.+ -+|+|+|+|+|+++.+..||+|+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVIVVEHDEETIRAADYVI 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHhhCCEEE
Confidence 45677899999999999999999986 899999999999999999876 456554 35899999999999999999999
Q ss_pred EE------eCCeEeEecChHHHHhc
Q 000905 790 VL------EGGQITQSGNYQELLLA 808 (1231)
Q Consensus 790 vl------~~G~I~~~Gt~~eL~~~ 808 (1231)
+| ++|+|++.|+++++...
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhcC
Confidence 99 99999999999998643
No 439
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.52 E-value=3.5e-14 Score=181.81 Aligned_cols=135 Identities=21% Similarity=0.324 Sum_probs=102.2
Q ss_pred cCCCCCHHHHHhcCCCC--CHH--H-----HHHHHHHhcchHHHhcCCCCCccc-ccCCCCcCChHHHHHHHHHHHHhcC
Q 000905 668 WIQSGSIRDNILYGKPM--DKA--R-----YDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQLARAVYND 737 (1231)
Q Consensus 668 ~lf~~TIreNI~fg~~~--~~~--~-----~~~vl~~~~L~~di~~lp~G~~T~-IGe~G~~LSGGQkQRIaLARAly~~ 737 (1231)
-+++.||.|.+.|-+.. +++ . ..+..+.. +.++.+ |.... .+..-.+|||||||||+||||+.++
T Consensus 433 ~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl---~~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 433 EVSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL---KFLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HHhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH---HHhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhhC
Confidence 45678888888774432 221 1 11222222 123333 33222 3566789999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEEEE------eCCeEeEecChHHHHhc
Q 000905 738 A--DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVL------EGGQITQSGNYQELLLA 808 (1231)
Q Consensus 738 ~--~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl------~~G~I~~~Gt~~eL~~~ 808 (1231)
| ++|||||||++||++..+.++ +.++.+. +|+|+|+|+|+++.+..||+|++| ++|+|+..|+++++.+.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 7 999999999999999999876 4565543 589999999999999999999999 99999999999998654
No 440
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=5.5e-13 Score=143.78 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=99.6
Q ss_pred CCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEE-EEeCCCcCCCCCHHHHHhcCCCCCHH
Q 000905 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA-YVSQTSWIQSGSIRDNILYGKPMDKA 687 (1231)
Q Consensus 609 ~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~ia-yv~Q~~~lf~~TIreNI~fg~~~~~~ 687 (1231)
++++.+|+++++++|+.++|+||+||||||+++.+.+..-. +++| +||-.. .+-++.|||..
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------a~~G~~vpa~~--~~l~~~d~I~~------- 77 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------AQIGCFVPAEY--ATLPIFNRLLS------- 77 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------HHcCCCcchhh--cCccChhheeE-------
Confidence 35789999999999999999999999999999998765311 0111 122111 12255555532
Q ss_pred HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc
Q 000905 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767 (1231)
Q Consensus 688 ~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l 767 (1231)
.+..++ .+.++..++|+|+||+ +.+-++..+|++++||||++++|+..+..+....+....
T Consensus 78 ----------------~~~~~d--~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~ 138 (204)
T cd03282 78 ----------------RLSNDD--SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI 138 (204)
T ss_pred ----------------ecCCcc--ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH
Confidence 222222 2345667899999975 555567789999999999999999887776655554433
Q ss_pred -CCcEEEEEccCcchhhcc
Q 000905 768 -EKKTVILVTHQVEFLSEV 785 (1231)
Q Consensus 768 -~~kTvIlvTH~l~~l~~a 785 (1231)
.++|+|++||..+....+
T Consensus 139 ~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 139 KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred hcCCEEEEECChHHHHHHh
Confidence 489999999998876543
No 441
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.41 E-value=8.6e-13 Score=144.81 Aligned_cols=159 Identities=23% Similarity=0.361 Sum_probs=99.6
Q ss_pred eeEEEEeeCCeEEEEECcCCCChHHHHHHH---hCCCcCCC-------cEEEE--------cCeEEEEeCCCc----CCC
Q 000905 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAI---LGEIPKIS-------GTVNL--------YGSIAYVSQTSW----IQS 671 (1231)
Q Consensus 614 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~~L---lg~~~~~~-------G~I~v--------~g~iayv~Q~~~----lf~ 671 (1231)
++..+.+.+ .+++|+||+||||||++.+| +|.-+..+ .-|.- ...|....+++- +..
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 456666665 49999999999999999999 45322211 11211 112333222221 111
Q ss_pred C--CHHHHH--------h-cCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHH----HHHhc
Q 000905 672 G--SIRDNI--------L-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA----RAVYN 736 (1231)
Q Consensus 672 ~--TIreNI--------~-fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLA----RAly~ 736 (1231)
. .|+..+ . -+.+...+++.+.++...+..+ .||||||-+++|| ..-+.
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~~~~~ 157 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLALQRYK 157 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHHHTCS
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccccccc
Confidence 1 111000 0 1223456677777766666544 8999999999998 33467
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEE
Q 000905 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1231)
Q Consensus 737 ~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl 791 (1231)
++++++|||+.++||....+++. +.+....++.-+|++||+......||+.+.+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLA-DLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHH-HHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 89999999999999999999876 4677777788999999999999999988765
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=8.5e-13 Score=178.68 Aligned_cols=121 Identities=21% Similarity=0.310 Sum_probs=101.8
Q ss_pred CCCc--CCCCCHHHHHhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHH------HHHHHHHHh
Q 000905 665 QTSW--IQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ------RIQLARAVY 735 (1231)
Q Consensus 665 Q~~~--lf~~TIreNI~fg~~~-~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQ------RIaLARAly 735 (1231)
.+-| .|+||++|||.+ +|. +++ ..+++.++...++..+|.| +|+++.+| +||||||| |++||||+.
T Consensus 1147 ~~~w~~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~ 1221 (1311)
T TIGR00606 1147 RDLWRSTYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFC 1221 (1311)
T ss_pred HHHHHHHcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHh
Confidence 3456 689999999999 664 555 6888899999999999999 89999887 89999999 999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc------CCcEEEEEccCcchhh------ccCeEEEE
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL------EKKTVILVTHQVEFLS------EVDRILVL 791 (1231)
Q Consensus 736 ~~~~IllLDep~SalD~~t~~~i~~~~i~~~l------~~kTvIlvTH~l~~l~------~aD~Iivl 791 (1231)
.+|++++|||||++||+.+...+. +.+.... .|.|+|+|||++.++. .+|+.+-+
T Consensus 1222 ~~~~il~lDEPt~~lD~~~~~~l~-~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1222 LNCGIIALDEPTTNLDRENIESLA-HALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 999999999999999999998765 3444331 3789999999999875 35666655
No 443
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1e-12 Score=146.76 Aligned_cols=197 Identities=24% Similarity=0.390 Sum_probs=141.6
Q ss_pred cEEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCC---CcCCCcEEEEcCeEEEEeCCCcCC
Q 000905 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPKISGTVNLYGSIAYVSQTSWIQ 670 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~---~~~~~G~I~v~g~iayv~Q~~~lf 670 (1231)
.|.++|-+.+-. .+..+-|.|+.|-.|..+++|||+|-||||||+-|..- +||. =.+-||.|+..-=
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn-------IDvLlCEQEvvad 333 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN-------IDVLLCEQEVVAD 333 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC-------CceEeeeeeeeec
Confidence 477787776643 34678899999999999999999999999999988742 2221 1367888887766
Q ss_pred CCCHHHHHhcC---------------------CCCCHHHHHHHH---HHhcc-------hHHHhcCCCCCcccccCCCC-
Q 000905 671 SGSIRDNILYG---------------------KPMDKARYDKAI---KACAL-------DKDINNFDHGDLTEIGQRGL- 718 (1231)
Q Consensus 671 ~~TIreNI~fg---------------------~~~~~~~~~~vl---~~~~L-------~~di~~lp~G~~T~IGe~G~- 718 (1231)
+.|--+-|+=. ..-..|+++++. ++.+. .+-+.. -|..-+.-++..
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTT 411 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCcc
Confidence 65555554422 111123444332 22222 122222 267777777765
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-cCeEEEEeCCeEe
Q 000905 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1231)
Q Consensus 719 ~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~-aD~Iivl~~G~I~ 797 (1231)
.+|||=|-||+||||||-.|-++.|||||..||-...-.+ ++.+.++ .||.++|+|.-.++.. |..||.+|+-++-
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 6899999999999999999999999999999998765443 4445554 5899999999999975 8999999998874
Q ss_pred -EecChHHH
Q 000905 798 -QSGNYQEL 805 (1231)
Q Consensus 798 -~~Gt~~eL 805 (1231)
..|+|.-.
T Consensus 489 yYrGNY~~F 497 (807)
T KOG0066|consen 489 YYRGNYTLF 497 (807)
T ss_pred hhcchHHHH
Confidence 56776543
No 444
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.38 E-value=6.3e-13 Score=126.34 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=57.6
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC-------------eEEEEeCCCcCCCCCHHH
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRD 676 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g-------------~iayv~Q~~~lf~~TIre 676 (1231)
.++|++++|++++|+.++|+||||||||||++++. +|++.++| .++|+||+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999987 78998877 27788887 99999999
Q ss_pred HHhc
Q 000905 677 NILY 680 (1231)
Q Consensus 677 NI~f 680 (1231)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 445
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.36 E-value=1.5e-12 Score=142.00 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=98.0
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCC-cCCCcEEEE--cCeEEEEeCCCcCCCCCHHHHHhcCCCCCH
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-PKISGTVNL--YGSIAYVSQTSWIQSGSIRDNILYGKPMDK 686 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~-~~~~G~I~v--~g~iayv~Q~~~lf~~TIreNI~fg~~~~~ 686 (1231)
+.+.+|++++.++ ++++|+||+||||||+++.+.+.. ....|...- ..+++|+.|-. ..-+++|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~--~~~~~~~---------- 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF--TRIGASD---------- 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe--ccCCchh----------
Confidence 4688999999987 999999999999999999996532 112232111 12455554310 1123333
Q ss_pred HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHH----HHHHHHHh--cCCCEEEEeCC---CCCCCHHHH-H
Q 000905 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR----IQLARAVY--NDADIYLFDDP---FSAVDAHTA-A 756 (1231)
Q Consensus 687 ~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQR----IaLARAly--~~~~IllLDep---~SalD~~t~-~ 756 (1231)
++|+||.++ ..+++++- .+|+++||||| |+++|.... .
T Consensus 85 --------------------------------~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~ 132 (216)
T cd03284 85 --------------------------------DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAW 132 (216)
T ss_pred --------------------------------hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHH
Confidence 344444443 34666664 59999999999 999997542 2
Q ss_pred HHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeCCeEeEecChHHH
Q 000905 757 TLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 757 ~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
.+.+ .+.. ..+.|+|++||..+....+|++.-+++|++...++.+++
T Consensus 133 ~il~-~l~~-~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 133 AIVE-YLHE-KIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHH-HHHh-ccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 2222 1211 137899999999887778888877888988776654443
No 446
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.32 E-value=3.9e-12 Score=142.28 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=89.5
Q ss_pred eEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe-EEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHH
Q 000905 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1231)
Q Consensus 624 e~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~-iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di 702 (1231)
+-++|+||+|||||||+++|.|++.+.+|+|.++|. +..+ | ++ .+.. . .+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~---------------------d-~~-~ei~-~-----~~ 162 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIV---------------------D-ER-SEIA-G-----CV 162 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecc---------------------h-hH-HHHH-H-----Hh
Confidence 678999999999999999999999999999999984 3311 1 11 0111 0 11
Q ss_pred hcCCCCCcccccCCCCcCChHHHH--HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcc
Q 000905 703 NNFDHGDLTEIGQRGLNLSGGQKQ--RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780 (1231)
Q Consensus 703 ~~lp~G~~T~IGe~G~~LSGGQkQ--RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~ 780 (1231)
..+|+- .+|.+-..+-+=.|+ -..++|| .+|+++++|||.+. + .+...+....+|+|+|++||..+
T Consensus 163 ~~~~q~---~~~~r~~v~~~~~k~~~~~~~i~~--~~P~villDE~~~~---e----~~~~l~~~~~~G~~vI~ttH~~~ 230 (270)
T TIGR02858 163 NGVPQH---DVGIRTDVLDGCPKAEGMMMLIRS--MSPDVIVVDEIGRE---E----DVEALLEALHAGVSIIATAHGRD 230 (270)
T ss_pred cccccc---cccccccccccchHHHHHHHHHHh--CCCCEEEEeCCCcH---H----HHHHHHHHHhCCCEEEEEechhH
Confidence 222221 122221222222222 3455565 59999999999742 1 12233333447999999999765
Q ss_pred h--h------------hccCeEEEEeCCeEeEecChHHHH
Q 000905 781 F--L------------SEVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 781 ~--l------------~~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
. + ..+|++++|++|+ ..|+.+++.
T Consensus 231 ~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 231 VEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred HHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 5 3 4489999999887 677766543
No 447
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.30 E-value=1e-11 Score=139.60 Aligned_cols=195 Identities=26% Similarity=0.357 Sum_probs=138.8
Q ss_pred eeEeeCCCCCCCceeeEEEEeeCCe-----EEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCc-CCCCC
Q 000905 600 GNFSWDPELAIPTLRGVNLDIKWAQ-----KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW-IQSGS 673 (1231)
Q Consensus 600 ~sf~y~~~~~~~~L~~inl~i~~Ge-----~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~-lf~~T 673 (1231)
..+.|+.. +..+.+..|.|+.|+ .+.-.|.+|-||||+++.+.|..+|++|.=.-.=+|+|=||.-- =+.+|
T Consensus 341 ~~y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~t 418 (592)
T KOG0063|consen 341 GRYSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGT 418 (592)
T ss_pred heeccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccch
Confidence 44667643 467889999999996 47889999999999999999999998873222226999999733 68899
Q ss_pred HHHHHhc--CCC-CCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 000905 674 IRDNILY--GKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1231)
Q Consensus 674 IreNI~f--g~~-~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~Sal 750 (1231)
+|+=+.= -.. .+..-..+|.+--..+ ..++..-.+||||+.||+|||-++=+.||+|+.|||-+-|
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~ie-----------~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAyl 487 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQIE-----------NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYL 487 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhHH-----------HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhc
Confidence 9875420 011 2334444444433332 3445667899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH--hcCCcEEEEEccCcchh-hccCeEEEEeC--CeEeEecChHHHHhc
Q 000905 751 DAHTAATLFNECVMA--ALEKKTVILVTHQVEFL-SEVDRILVLEG--GQITQSGNYQELLLA 808 (1231)
Q Consensus 751 D~~t~~~i~~~~i~~--~l~~kTvIlvTH~l~~l-~~aD~Iivl~~--G~I~~~Gt~~eL~~~ 808 (1231)
|.+..... .++++. +-.+||-.+|-|..-.. =.||+++|.+. +.....-+++.|++.
T Consensus 488 DSeQRi~A-skvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~g 549 (592)
T KOG0063|consen 488 DSEQRIIA-SKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAG 549 (592)
T ss_pred ChHHHHHH-HHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHH
Confidence 99865432 233333 23589999999997554 34899999874 333334445555543
No 448
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.3e-09 Score=121.20 Aligned_cols=262 Identities=13% Similarity=0.100 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-
Q 000905 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV- 1040 (1231)
Q Consensus 962 ~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~~~~~~~~~~- 1040 (1231)
...+.=.++.-++++++.-.+-.-.+.--.|+++||...|++.+|+..=..+...+..+...+++++..++..|++.+.
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll 164 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLL 164 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3455556666666677766666666666789999999999999998877777666666665555555555666665433
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHHHHHHhHH
Q 000905 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1231)
Q Consensus 1041 ~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~rW 1120 (1231)
.+.+++....+--.+.+.+|...+=-...|.-.++||.|-++|.+--+.||++++|.+.+.+.-+...++.........|
T Consensus 165 ~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~ 244 (573)
T COG4987 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGL 244 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222223334443333345778899999999999999999999999999999998888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcCCCcChhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhchhHHHHHhhhcCCCCCC
Q 000905 1121 LILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLS-RWYCYLANYIISVERIKQFMHIPPEPP 1198 (1231)
Q Consensus 1121 l~~rl~~i~~~~~~~~a~~-~v~~~~~~~~~g~~Gl~lsyal~l~~~l~~~v-r~~~~lE~~m~SvERi~eY~~l~~E~~ 1198 (1231)
-..-+.++..+.+....+. +.....|..+.-.+-+++--++.....+.-+. -.+.++....-|.+|+.+-.+-++|.+
T Consensus 245 ~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~ 324 (573)
T COG4987 245 SDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT 324 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccC
Confidence 9888888776655422221 11122333331112222222233444444444 445788888999999998776666654
Q ss_pred CCCCCCCCCCCCCCCC-eEEEEeEEEEecCCC
Q 000905 1199 AIVEDKRPPSSWPFKG-RIELRQLKVSLHMEL 1229 (1231)
Q Consensus 1199 ~~~~~~~pp~~WP~~G-~I~f~~v~~rYr~~l 1229 (1231)
.. +. .-|..| .++++||+++|..+-
T Consensus 325 ~~--~~----~~~~~~~~l~~~~vsF~y~~~~ 350 (573)
T COG4987 325 FP--DE----QTATTGQALELRNVSFTYPGQQ 350 (573)
T ss_pred CC--cc----ccCCccceeeeccceeecCCCc
Confidence 32 11 122233 899999999997543
No 449
>PRK00064 recF recombination protein F; Reviewed
Probab=99.28 E-value=6.4e-11 Score=139.21 Aligned_cols=76 Identities=29% Similarity=0.336 Sum_probs=63.1
Q ss_pred CcCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc---c
Q 000905 718 LNLSGGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE---V 785 (1231)
Q Consensus 718 ~~LSGGQkQRIaLARAly---------~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~---a 785 (1231)
..+|+||+++++||+++. .+|+|+|||||+|.||++..+.+++ .+... +.+++++||+...++. .
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~-~l~~~--~~qv~it~~~~~~~~~~~~~ 348 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLE-RLKGL--GAQVFITTTDLEDLADLLEN 348 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHH-HHhcc--CCEEEEEcCChhhhhhhhcc
Confidence 578999999999999885 7999999999999999999888764 34321 4688999998776543 4
Q ss_pred CeEEEEeCCeE
Q 000905 786 DRILVLEGGQI 796 (1231)
Q Consensus 786 D~Iivl~~G~I 796 (1231)
++++.|++|+|
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 68999999997
No 450
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.25 E-value=8.7e-12 Score=156.26 Aligned_cols=107 Identities=23% Similarity=0.351 Sum_probs=87.1
Q ss_pred HHHHHHHHhcchHHHhcCCCCCcccccCCC------CcCChHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCC
Q 000905 688 RYDKAIKACALDKDINNFDHGDLTEIGQRG------LNLSGGQKQRIQLARAVY----------NDADIYLFDDPF-SAV 750 (1231)
Q Consensus 688 ~~~~vl~~~~L~~di~~lp~G~~T~IGe~G------~~LSGGQkQRIaLARAly----------~~~~IllLDep~-Sal 750 (1231)
.+.+.++..+. +....+|+|.++.+++.| .+||||||||++||||+. .+|++++||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34445554442 222357899999999998 789999999999999987 599999999998 789
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeC-CeEe
Q 000905 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG-GQIT 797 (1231)
Q Consensus 751 D~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~-G~I~ 797 (1231)
|+.....+. +.+... +++|+|+|||+.+....+|++++|++ |+..
T Consensus 511 d~~~~~~~~-~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~~ 556 (562)
T PHA02562 511 DAEGTKALL-SILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRFS 556 (562)
T ss_pred chhHHHHHH-HHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCee
Confidence 999998876 466666 88999999999988889999999986 6543
No 451
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.1e-08 Score=119.32 Aligned_cols=285 Identities=13% Similarity=0.063 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHH
Q 000905 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1231)
Q Consensus 937 ~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~ 1016 (1231)
+++..+++.++-.+....+.-.....+.++...+..++++++.+.+-.|-...|+|.+....+.-++.++.-+...+-..
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~ 121 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQM 121 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566666667777888888899999999999999999999999999999998888887666666666
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHH-HHHHH-hhhHHHHHHhhcccchHHHHHHHhhcCcchhhccc
Q 000905 1017 AASGTELLAIIGIMTFVTWQVL---VVAIFAMVAVRFV-QRYYI-ATARELIRINGTTKAPVMNYTAETSQGVVTIRAFN 1091 (1231)
Q Consensus 1017 ~~~~~~~l~~i~vi~~~~~~~~---~~~ipl~~~~~~~-~~~Y~-~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~ 1091 (1231)
+.+.+..+..++.+....|... ++..|++.++..+ ...=- .+.++.+-+ .-+-+||-+.+.|+.|+|+||
T Consensus 122 ~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~-----~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSAL-----ARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHhcChHHHHHhc
Confidence 6666666666667777777643 3345666555432 22110 112222222 234589999999999999999
Q ss_pred cHHHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCcChhHHHHHHHHHHHHHHHHHH
Q 000905 1092 MVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI-PR-GYVAPGLVGLSLSYAFTLTGTQVF 1169 (1231)
Q Consensus 1092 ~~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~~v~~-~~-~~~~~g~~Gl~lsyal~l~~~l~~ 1169 (1231)
..+.-.++..+.-....+......-.+-=-+.-||++..+.+..+|+.+.+. .. |.++-.-.=++|--|-.+..-+--
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 9877666655544443333222111111112345555555555555443321 12 344433223445555566666666
Q ss_pred HHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1170 LSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1170 ~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
+-..|-.--+...+.|.+..+.+.|.+.+.. +......|-...+|+.+|++++|+++
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~--~~~~~~~~~~~~ei~~~~l~~~y~~g 333 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGS--GEKAEVANEPPIEISLENLSFRYPDG 333 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCC--ccccccccCCCceeeecceEEecCCC
Confidence 6666666677778899999998877765432 22224456566788888999999876
No 452
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=7.8e-11 Score=128.27 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=92.9
Q ss_pred CceeeEEEEeeCCeEEEEECcCCCChHHHHHHHh--CCCcCCCcEEEEc--CeEEEEeCCCcCCC--CCHHHHHhcCCCC
Q 000905 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--GEIPKISGTVNLY--GSIAYVSQTSWIQS--GSIRDNILYGKPM 684 (1231)
Q Consensus 611 ~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Ll--g~~~~~~G~I~v~--g~iayv~Q~~~lf~--~TIreNI~fg~~~ 684 (1231)
++-.|++++=..+.+++|+||+|+|||||++.+. +.+ ...|..... ..++|..|...-++ .|+.+++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~------ 89 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQ------ 89 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhcc------
Confidence 4556666643223899999999999999999998 334 456665432 36788777532211 1222211
Q ss_pred CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000905 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764 (1231)
Q Consensus 685 ~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~ 764 (1231)
-|. --+-||+++|+++..+++++|||||++++|+..+..+....++
T Consensus 90 -------------------------S~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 90 -------------------------SAF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred -------------------------chH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 111 3356999999999999999999999999999877777655665
Q ss_pred HhcC----CcEEEEEccCcchhhcc
Q 000905 765 AALE----KKTVILVTHQVEFLSEV 785 (1231)
Q Consensus 765 ~~l~----~kTvIlvTH~l~~l~~a 785 (1231)
...+ +.++|++||..+.....
T Consensus 136 ~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 136 HLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhcCCCCcEEEEEcChHHHHHhh
Confidence 5442 24899999998876543
No 453
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.19 E-value=6e-11 Score=150.69 Aligned_cols=145 Identities=20% Similarity=0.273 Sum_probs=100.4
Q ss_pred cEEEEeeeEeeCCCCCCCceee-----EEEEeeCC-eEEEEECcCCCChHHHHHHHhCC-CcCCCcEEEEcCeEEEEeCC
Q 000905 594 SVKIQEGNFSWDPELAIPTLRG-----VNLDIKWA-QKIAVCGSVGAGKSSLLYAILGE-IPKISGTVNLYGSIAYVSQT 666 (1231)
Q Consensus 594 ~I~~~~~sf~y~~~~~~~~L~~-----inl~i~~G-e~vaIvG~sGSGKSTLl~~Llg~-~~~~~G~I~v~g~iayv~Q~ 666 (1231)
.+.++++.. |.+++ +|+++.+| +.++|+||+|+||||+++.+.|. +.+..|. +||..
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------~Vpa~ 358 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------PIPAN 358 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------CccCC
Confidence 566666543 34433 68888887 99999999999999999999987 4555552 33433
Q ss_pred CcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000905 667 SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1231)
Q Consensus 667 ~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep 746 (1231)
... .-.+.++|.- .+ |++-.+.++-.++|+|++++..+++++ .+++++|||||
T Consensus 359 ~~~-~~~~~d~i~~-----------------------~i--~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~ 411 (771)
T TIGR01069 359 EHS-EIPYFEEIFA-----------------------DI--GDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDEL 411 (771)
T ss_pred ccc-cccchhheee-----------------------ec--ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCC
Confidence 210 0011222210 00 111123345678999999999999987 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcch
Q 000905 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF 781 (1231)
Q Consensus 747 ~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~ 781 (1231)
++++|+..+..+....+.... ++.++|++||..+.
T Consensus 412 g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 412 GAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 999999999887554554432 58899999999765
No 454
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.18 E-value=1.4e-11 Score=131.45 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=85.3
Q ss_pred EEEECcCCCChHHHHHHHh-CCCcCCCcEEEEcC--eEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHH
Q 000905 626 IAVCGSVGAGKSSLLYAIL-GEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1231)
Q Consensus 626 vaIvG~sGSGKSTLl~~Ll-g~~~~~~G~I~v~g--~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di 702 (1231)
++|+||+|+||||+++.+. ..+-...|...-.. +++|+.|- +
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~i-----------------------------------l 46 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRI-----------------------------------F 46 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceE-----------------------------------E
Confidence 6799999999999999997 44444444321111 22222111 1
Q ss_pred hcCCCCCcccccCCCCcCChHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEccC
Q 000905 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN--DADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQ 778 (1231)
Q Consensus 703 ~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IllLDep~SalD~~t~~~i~~~~i~~~l--~~kTvIlvTH~ 778 (1231)
..++.. -.+.++-.++|+|++| +++++-. +|+++|+|||++++|+.....+....++... .+.++|++||.
T Consensus 47 ~~~~~~--d~~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~ 121 (185)
T smart00534 47 TRIGAS--DSLAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred EEeCCC--CchhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 122211 1134555688888887 5555555 9999999999999999988887766665543 37899999999
Q ss_pred cchhhccCeEEEEeCCeE
Q 000905 779 VEFLSEVDRILVLEGGQI 796 (1231)
Q Consensus 779 l~~l~~aD~Iivl~~G~I 796 (1231)
.+....+|+---+++++.
T Consensus 122 ~~l~~~~~~~~~v~~~~~ 139 (185)
T smart00534 122 HELTKLADEHPGVRNLHM 139 (185)
T ss_pred HHHHHHhhcCccceEEEE
Confidence 987666765333344433
No 455
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.09 E-value=7.5e-09 Score=118.21 Aligned_cols=287 Identities=12% Similarity=0.161 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCc
Q 000905 936 ILIGVYAGVSTAS------AVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI 1009 (1231)
Q Consensus 936 ~~l~vy~~l~~~~------~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~l 1009 (1231)
.....|..+-+++ +++..+|+++.....--+.|.+--++++++..-.++|.=..-+|.+|.-..+-.+.+. .+
T Consensus 254 ~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll 332 (790)
T KOG0056|consen 254 SLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LL 332 (790)
T ss_pred HHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HH
Confidence 3445566554443 4555667766666666788888889999999999999999999988777766666554 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHH---HHH-hhhHHHHHHhhcccchHHHHHHHhhcCc
Q 000905 1010 PFSIVFVAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRFVQR---YYI-ATARELIRINGTTKAPVMNYTAETSQGV 1084 (1231)
Q Consensus 1010 p~~l~~~~~~~~~~l~~i~vi~-~~~~~~~~~~ipl~~~~~~~~~---~Y~-~tsRelkRl~s~srSPi~s~f~Etl~Gl 1084 (1231)
........-....++..++..+ ...|||.++....+.+|.++.- -++ +.-|.+.--+.++ +..-.+++-+-
T Consensus 333 ~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nes----rAr~vDsllNF 408 (790)
T KOG0056|consen 333 EYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNES----RARQVDSLLNF 408 (790)
T ss_pred HHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhh----hhhhhhhhhcc
Confidence 1111111112222322322222 3567776665555556655311 011 1112222222223 34556889999
Q ss_pred chhhccccHHHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcChhHHHHHHHHHHHH
Q 000905 1085 VTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL-IPRGYVAPGLVGLSLSYAFTL 1163 (1231)
Q Consensus 1085 ~tIRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~~v~-~~~~~~~~g~~Gl~lsyal~l 1163 (1231)
.|++-|++|+.=.+++.+.++..++.-+.....-..|..--..+-.+-++...++++. ...+....|-.-+..+|.+++
T Consensus 409 ETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqL 488 (790)
T KOG0056|consen 409 ETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQL 488 (790)
T ss_pred hhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHH
Confidence 9999999999999999999999998877766555455433332222222233333222 124556777777999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCCCC
Q 000905 1164 TGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHMELI 1230 (1231)
Q Consensus 1164 ~~~l~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~l~ 1230 (1231)
-+-+||+-..+-.++++++-.||+.+..+-++|--. .+..||- =-.+|.|+|+||++.|.|+.|
T Consensus 489 y~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--~P~a~pl-~~~~G~i~fsnvtF~Y~p~k~ 552 (790)
T KOG0056|consen 489 YMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--LPGAPPL-KVTQGKIEFSNVTFAYDPGKP 552 (790)
T ss_pred hCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc--CCCCCCc-cccCCeEEEEEeEEecCCCCc
Confidence 999999999999999999999999998765554321 1122222 235799999999999999976
No 456
>PRK13695 putative NTPase; Provisional
Probab=99.06 E-value=2.5e-10 Score=120.58 Aligned_cols=152 Identities=18% Similarity=0.248 Sum_probs=97.0
Q ss_pred EEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhc
Q 000905 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704 (1231)
Q Consensus 625 ~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~ 704 (1231)
+++|+|++|||||||++.+.+.+.+ .| +.+ .+|+.|+... ++. ..|-... .+ . .+-..-+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~---~g~~~~~~~~-~~~-----~~~~~~~--~~----~-~~~~~~l~~ 63 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKV---GGFYTEEVRE-GGK-----RIGFKII--DL----D-TGEEGILAR 63 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeE---EEEEcHHHHh-cCC-----ccceEEE--Ec----C-CCCeEEccc
Confidence 6899999999999999999988765 46 222 4566664211 000 0110000 00 0 000000011
Q ss_pred CCCC-CcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcch
Q 000905 705 FDHG-DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD--PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1231)
Q Consensus 705 lp~G-~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDe--p~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~ 781 (1231)
. +. ....++.....+||+++-++.+++...++|+++++|| |+..+|.+..+. +++++ ..++++|+++|.-..
T Consensus 64 ~-~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~-l~~~~---~~~~~~i~v~h~~~~ 138 (174)
T PRK13695 64 V-GFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKA-VEEVL---DSEKPVIATLHRRSV 138 (174)
T ss_pred c-CCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHH-HHHHH---hCCCeEEEEECchhh
Confidence 1 00 1123345566799999999999999999999999999 444555443332 33333 358999999999655
Q ss_pred hhccCeEEEEeCCeEeEe
Q 000905 782 LSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 782 l~~aD~Iivl~~G~I~~~ 799 (1231)
-+.+|+|..+.+|+|.+.
T Consensus 139 ~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 139 HPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred HHHHHHHhccCCcEEEEE
Confidence 567999999999999886
No 457
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=4.2e-10 Score=122.75 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=87.8
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhC-CCcCCCcEEEEcC--eEEEEeCCCcCCCCCHHHHHhcCCCCCH
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKPMDK 686 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg-~~~~~~G~I~v~g--~iayv~Q~~~lf~~TIreNI~fg~~~~~ 686 (1231)
+++.+|+++++++|++++|+||+|+||||+++.+.+ .+.+..|...... +++|.+|=-. ....+|++.-|.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~--~~~~~d~~~~~~---- 91 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLT--RMGASDSIQHGM---- 91 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEE--EecCcccccccc----
Confidence 478999999999999999999999999999999999 8888888765433 3444333110 001111111111
Q ss_pred HHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q 000905 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766 (1231)
Q Consensus 687 ~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~ 766 (1231)
-|. ..+=+|++-.=.-..+++++|||||.++.|+..+..+....+..+
T Consensus 92 -----------------------StF---------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l 139 (222)
T cd03287 92 -----------------------STF---------MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYL 139 (222)
T ss_pred -----------------------chH---------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHH
Confidence 010 112222222212235789999999988887766666544444443
Q ss_pred c--CCcEEEEEccCcchhh
Q 000905 767 L--EKKTVILVTHQVEFLS 783 (1231)
Q Consensus 767 l--~~kTvIlvTH~l~~l~ 783 (1231)
. ++.|+|++||..+...
T Consensus 140 ~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 140 LEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HhccCCeEEEEcccHHHHH
Confidence 3 4789999999988654
No 458
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.04 E-value=3.1e-10 Score=141.22 Aligned_cols=78 Identities=24% Similarity=0.276 Sum_probs=69.5
Q ss_pred CCcCChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEe
Q 000905 717 GLNLSGGQKQRIQLARAVYND----ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~~----~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~ 792 (1231)
+..+|||||||++||||+... |+++|||||+++||+.+...+. +.+....+++|+|+|||+++....||++++|+
T Consensus 438 ~~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 438 AKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLSERHQVLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hhhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEEChHHHHHhcCeEEEEE
Confidence 347999999999999999875 6999999999999999998865 56666667999999999999999999999998
Q ss_pred CCe
Q 000905 793 GGQ 795 (1231)
Q Consensus 793 ~G~ 795 (1231)
+|.
T Consensus 517 k~~ 519 (563)
T TIGR00634 517 KEG 519 (563)
T ss_pred Ecc
Confidence 875
No 459
>PRK10869 recombination and repair protein; Provisional
Probab=99.00 E-value=7.5e-10 Score=136.57 Aligned_cols=77 Identities=23% Similarity=0.225 Sum_probs=68.9
Q ss_pred CcCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEeC
Q 000905 718 LNLSGGQKQRIQLARAVYN----DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1231)
Q Consensus 718 ~~LSGGQkQRIaLARAly~----~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~ 793 (1231)
..+||||+|||+|||++.. +|+++|||||+++||..+...+. +.+....+++|+|+|||.++....||+++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG-KLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEec
Confidence 3699999999999999997 58999999999999999999875 466666678999999999999999999999987
Q ss_pred Ce
Q 000905 794 GQ 795 (1231)
Q Consensus 794 G~ 795 (1231)
+.
T Consensus 508 ~~ 509 (553)
T PRK10869 508 ET 509 (553)
T ss_pred cc
Confidence 53
No 460
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.99 E-value=6.5e-09 Score=123.77 Aligned_cols=176 Identities=15% Similarity=0.193 Sum_probs=111.1
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCe----EE-EEeCCCcCCCCCHHHHHhcCCCC
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----IA-YVSQTSWIQSGSIRDNILYGKPM 684 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~----ia-yv~Q~~~lf~~TIreNI~fg~~~ 684 (1231)
..+++++ +++++|++++|+|++|+|||||++.|.|.++++.|.|.+.|. +. ++.. .+-...++..|.+-...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~--~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIER--DLGPEGLKRSIVVVATS 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHh--hcChhhhcCeEEEEECC
Confidence 4689999 999999999999999999999999999999999988776431 11 0000 01111123333332222
Q ss_pred ---CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCE-EEEeC--CCCCCCHHHHHHH
Q 000905 685 ---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI-YLFDD--PFSAVDAHTAATL 758 (1231)
Q Consensus 685 ---~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~I-llLDe--p~SalD~~t~~~i 758 (1231)
.-+++..+--++...+.+.. .|.+-.+=-. +++ | .|||.= +| +.+.| .++++|+.....+
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~D--slt-----r--~A~A~r---Eisl~~ge~P~~~G~dp~~~~~l 288 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRD--QGLNVMLMMD--SVT-----R--VAMAQR---EIGLAVGEPPTTKGYTPSVFAIL 288 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChH-----H--HHHHHH---HHHHhcCCCCccccCCHHHHHHH
Confidence 24566666666666666653 2433322100 000 1 111110 00 01234 4789999988765
Q ss_pred HHHHHHHhc---CCc-----EEEEEccCcchhhccCeEEEEeCCeEeEecChHH
Q 000905 759 FNECVMAAL---EKK-----TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804 (1231)
Q Consensus 759 ~~~~i~~~l---~~k-----TvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt~~e 804 (1231)
- +.+...- +|. |+++.+|+++. +-||++.+|.||+|+..|+..+
T Consensus 289 ~-~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 289 P-KLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred H-HHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 4 3444332 465 99999999985 8899999999999999987443
No 461
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.98 E-value=3.7e-09 Score=134.99 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=96.3
Q ss_pred ceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCC-CcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHH
Q 000905 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE-IPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD 690 (1231)
Q Consensus 612 ~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~-~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~ 690 (1231)
+-.|+++. +.+..+.|+||+++||||+++.+... +-...|. +||-+.- -.-++-|+|..
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~--------~vpa~~~-~~i~~~~~i~~---------- 376 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL--------PIPANEP-SEIPVFKEIFA---------- 376 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC--------CcccCCC-ccccccceEEE----------
Confidence 33445543 34567999999999999999988422 1111110 2332210 01122233321
Q ss_pred HHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CC
Q 000905 691 KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EK 769 (1231)
Q Consensus 691 ~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~ 769 (1231)
.-||...+..+-.++|+|++|++.++|++ .+|+++|||||++++|+..+..+....+.... ++
T Consensus 377 ---------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~ 440 (782)
T PRK00409 377 ---------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRG 440 (782)
T ss_pred ---------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 11333344456678999999999999999 89999999999999999999887655554332 57
Q ss_pred cEEEEEccCcchhhcc-CeEEEEeCCeEe
Q 000905 770 KTVILVTHQVEFLSEV-DRILVLEGGQIT 797 (1231)
Q Consensus 770 kTvIlvTH~l~~l~~a-D~Iivl~~G~I~ 797 (1231)
.++|++||..+....+ |+.. +.++.+.
T Consensus 441 ~~vIitTH~~el~~~~~~~~~-v~~~~~~ 468 (782)
T PRK00409 441 AKIIATTHYKELKALMYNREG-VENASVE 468 (782)
T ss_pred CEEEEECChHHHHHHHhcCCC-eEEEEEE
Confidence 8999999998876554 3333 3344443
No 462
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.94 E-value=7.5e-10 Score=124.83 Aligned_cols=158 Identities=23% Similarity=0.340 Sum_probs=115.1
Q ss_pred eCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEE-----------cC-------------------eEEEEeCCCcCC
Q 000905 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-----------YG-------------------SIAYVSQTSWIQ 670 (1231)
Q Consensus 621 ~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v-----------~g-------------------~iayv~Q~~~lf 670 (1231)
++|+..++||.+|-||||-++.++|..+|.-|.-.. .| ..-||.|-|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 589999999999999999999999999998776421 11 234555556556
Q ss_pred CCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 000905 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1231)
Q Consensus 671 ~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~Sal 750 (1231)
.+++++++- +..+.+...++++.-+|+.-++ ..-..||||+-||.++|-+..+++|+|++|||.|-|
T Consensus 178 k~~v~~~l~--~~~~r~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 178 KGTVGSLLD--RKDERDNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred HHHHHHHHH--HHhhcccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 667776653 2233344555565555543332 123469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-cCeEEEEe
Q 000905 751 DAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLE 792 (1231)
Q Consensus 751 D~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~-aD~Iivl~ 792 (1231)
|.+..-+- ...|+.+ ..++-+|+|-|+++.+.. .|-|-++-
T Consensus 245 DVKQRLka-A~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 245 DVKQRLKA-AITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred hHHHhhhH-HHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99876543 2345544 468999999999998764 56666653
No 463
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.93 E-value=7e-10 Score=121.34 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHH
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPF-----SAVDAHTAATLFNECVMA 765 (1231)
Q Consensus 723 GQkQRIaLARAly~~~~IllLDep~-----SalD~~t~~~i~~~~i~~ 765 (1231)
-|++++.|||+++.+|++++||||| ++||+.+.+++.+ .+..
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~-~~~~ 202 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEK-ELQA 202 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHH-HHHH
Confidence 3999999999999999999999999 9999999998764 4443
No 464
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.2e-08 Score=123.78 Aligned_cols=107 Identities=28% Similarity=0.415 Sum_probs=89.2
Q ss_pred HHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEcc
Q 000905 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA--DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTH 777 (1231)
Q Consensus 701 di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~--~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH 777 (1231)
++...--||.|. ...-.+||||+.|||-||+.+.++= =+|+||||..+|-+.--.++++ .++.+. .|.|+|+|-|
T Consensus 464 fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~-tL~~LRDlGNTviVVEH 541 (935)
T COG0178 464 FLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE-TLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHH-HHHHHHhcCCeEEEEec
Confidence 444555577775 3345699999999999999999974 4899999999999887777764 454443 5999999999
Q ss_pred CcchhhccCeEEEE------eCCeEeEecChHHHHhcC
Q 000905 778 QVEFLSEVDRILVL------EGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 778 ~l~~l~~aD~Iivl------~~G~I~~~Gt~~eL~~~~ 809 (1231)
+.++++.||+|+=| ..|+|+.+|+++|++++.
T Consensus 542 Dedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 542 DEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 99999999999998 579999999999999875
No 465
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.84 E-value=3.1e-08 Score=109.26 Aligned_cols=144 Identities=25% Similarity=0.246 Sum_probs=82.6
Q ss_pred eeCCeEEEEECcCCCChHHH-HHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcc
Q 000905 620 IKWAQKIAVCGSVGAGKSSL-LYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL 698 (1231)
Q Consensus 620 i~~Ge~vaIvG~sGSGKSTL-l~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L 698 (1231)
+++|+.+.|.|++||||||| ++.+.+..++. .++.|++.+ .|..+.+ +-++..+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-------~~~~yi~~e-----~~~~~~~------------~~~~~~g~ 76 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNG-------YSVSYVSTQ-----LTTTEFI------------KQMMSLGY 76 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-------CcEEEEeCC-----CCHHHHH------------HHHHHhCC
Confidence 89999999999999999999 68888776543 245666532 1222222 11122221
Q ss_pred hHHHhcCC-CCCcccccCCCCcCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCC----CHHHHHHHHHHHHHHhc-C
Q 000905 699 DKDINNFD-HGDLTEIGQRGLNLSGGQKQRIQLARAVYN----DADIYLFDDPFSAV----DAHTAATLFNECVMAAL-E 768 (1231)
Q Consensus 699 ~~di~~lp-~G~~T~IGe~G~~LSGGQkQRIaLARAly~----~~~IllLDep~Sal----D~~t~~~i~~~~i~~~l-~ 768 (1231)
|++.+- .|.--.+ +-...+|+++.++-.++|.+-. +|+++++|||++.+ |+...+.+. +.++... +
T Consensus 77 --~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~ 152 (230)
T PRK08533 77 --DINKKLISGKLLYI-PVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSL 152 (230)
T ss_pred --chHHHhhcCcEEEE-EecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhC
Confidence 111110 0110000 1112467777766666665544 69999999999999 666555554 4455443 3
Q ss_pred CcEEEEEccCcchhh---------ccCeEEEEe
Q 000905 769 KKTVILVTHQVEFLS---------EVDRILVLE 792 (1231)
Q Consensus 769 ~kTvIlvTH~l~~l~---------~aD~Iivl~ 792 (1231)
|.|+++ ||+..... -||-|+.|+
T Consensus 153 g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 153 NKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred CCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 666555 56544321 157777775
No 466
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.78 E-value=9.2e-09 Score=118.56 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=96.2
Q ss_pred EEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHH
Q 000905 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKA 695 (1231)
Q Consensus 616 inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~ 695 (1231)
+++.+++|+.++|+|++|||||||+++|++++++..|.+.+....-+ .+.. .|.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El-----~~~~----~~~----------------- 190 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREI-----FLPH----PNY----------------- 190 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCcccc-----CCCC----CCE-----------------
Confidence 45678899999999999999999999999999998876654311000 0000 000
Q ss_pred hcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCC-cEEEE
Q 000905 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVIL 774 (1231)
Q Consensus 696 ~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~-kTvIl 774 (1231)
+++ .....+.. .++-...=.+++++..+||++++|||.+ .+. + +.++....| .+++.
T Consensus 191 ~~l-------------~~~~~~~~-~~~~~~~~~l~~~Lr~~pd~ii~gE~r~---~e~----~-~~l~a~~~g~~~~i~ 248 (308)
T TIGR02788 191 VHL-------------FYSKGGQG-LAKVTPKDLLQSCLRMRPDRIILGELRG---DEA----F-DFIRAVNTGHPGSIT 248 (308)
T ss_pred EEE-------------EecCCCCC-cCccCHHHHHHHHhcCCCCeEEEeccCC---HHH----H-HHHHHHhcCCCeEEE
Confidence 000 00000000 2222233467788999999999999996 222 2 234333344 45699
Q ss_pred EccCcchhhccCeEEEEeCCeEeEecChHHHH
Q 000905 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 775 vTH~l~~l~~aD~Iivl~~G~I~~~Gt~~eL~ 806 (1231)
++|..+.....||+..|..|++...|...+.+
T Consensus 249 T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 249 TLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred EEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 99999988889999999999999999888876
No 467
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.77 E-value=2e-05 Score=89.18 Aligned_cols=265 Identities=15% Similarity=0.159 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHHHHHHHH
Q 000905 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1231)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~ 1020 (1231)
++++..+..+...+........|-+.--++..+..+.++.+|+.-+++-..||++.++++|+.+|...... +-.+.+..
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~-lp~~~qa~ 132 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSR-LPELVQAI 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhh-hHHHHHHH
Confidence 33333333333444455556677777888899999999999999999999999999999999999733222 22355666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HHHHHH--HHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccH
Q 000905 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAV-----RFVQRY--YIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV 1093 (1231)
Q Consensus 1021 ~~~l~~i~vi~~~~~~~~~~~ipl~~~~-----~~~~~~--Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~ 1093 (1231)
+-.+++.+..++.+|++..+.+..+++. +.+.+. |+.++||. .-.++.|++--++|..-.+--+..
T Consensus 133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~-------ed~Lq~~y~~il~G~KEL~l~r~R 205 (546)
T COG4615 133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARET-------EDKLQNDYQTILEGRKELTLNRER 205 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHhcchhhheechHH
Confidence 6777888888888888765543333322 222222 34455554 236788999999999887765544
Q ss_pred HHHHHHHHHHhhhh------hchHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcChhHHHHHHHHHHHH---
Q 000905 1094 DRFFQNYLKLVDID------ASLFFHTNGVMEWLILRV-EALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTL--- 1163 (1231)
Q Consensus 1094 ~~f~~~~~~~lD~~------~~~~~~~~~~~rWl~~rl-~~i~~~~~~~~a~~~v~~~~~~~~~g~~Gl~lsyal~l--- 1163 (1231)
.+....+...=|.+ .+..-....++.|-.+-+ -++|..+- .++. - ...+.. .+.++++.+
T Consensus 206 ~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~--lal~-----~-~w~st~--~a~tivlvlLfl 275 (546)
T COG4615 206 AEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFW--LALS-----L-GWASTN--VAATIVLVLLFL 275 (546)
T ss_pred HHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHh-----h-ccchhh--HHHHHHHHHHHH
Confidence 33333222111111 111111123456665432 12221110 1110 0 111111 344444443
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCC
Q 000905 1164 TGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHME 1228 (1231)
Q Consensus 1164 ~~~l~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~ 1228 (1231)
-+.++.++...-.+-+.=++..||.+...-| ++ ++-..|..-|+=-.||++||.+.|.|+
T Consensus 276 r~pL~s~vgilP~l~~AqvA~~kiakle~~~-~~----a~~~~~q~~p~~~~lelrnvrfay~~~ 335 (546)
T COG4615 276 RTPLLSAVGILPTLLTAQVAFNKIAKLELAP-YK----ADFPRPQAFPDWKTLELRNVRFAYQDN 335 (546)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHhhcCC-cc----ccCCCCCcCCcccceeeeeeeeccCcc
Confidence 3446666666667777778899999885521 11 111122223444669999999999875
No 468
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.77 E-value=4.9e-08 Score=104.12 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=88.8
Q ss_pred EEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcC
Q 000905 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF 705 (1231)
Q Consensus 626 vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~l 705 (1231)
+.|.|++|+|||+|..-++-..-.. | ..+.|++=+ .+.+++.+-++..+.+ ++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g-----~~v~~~s~e-----------------~~~~~~~~~~~~~g~~--~~~l 56 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-G-----EPGLYVTLE-----------------ESPEELIENAESLGWD--LERL 56 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-C-----CcEEEEECC-----------------CCHHHHHHHHHHcCCC--hHHH
Confidence 6799999999999988766443322 2 245555411 1233333333333332 2222
Q ss_pred -CCCCcccccCCCCcCChHHHH-----HHHHHHH-HhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHh-cCCcEEEE
Q 000905 706 -DHGDLTEIGQRGLNLSGGQKQ-----RIQLARA-VYNDADIYLFDDPFSAVD---AHTAATLFNECVMAA-LEKKTVIL 774 (1231)
Q Consensus 706 -p~G~~T~IGe~G~~LSGGQkQ-----RIaLARA-ly~~~~IllLDep~SalD---~~t~~~i~~~~i~~~-l~~kTvIl 774 (1231)
..|....+......+|+||+| +..+.++ .-.+|+++++|+|++.+| ....+.+. +.+... ..|.|+|+
T Consensus 57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~-~l~~~l~~~g~tvi~ 135 (187)
T cd01124 57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIR-RLLFALKRFGVTTLL 135 (187)
T ss_pred HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 234444555666788999998 3444444 556899999999999999 55555443 344332 25889999
Q ss_pred EccCcch---------h-hccCeEEEEe
Q 000905 775 VTHQVEF---------L-SEVDRILVLE 792 (1231)
Q Consensus 775 vTH~l~~---------l-~~aD~Iivl~ 792 (1231)
++|.... + ..||.|+.|+
T Consensus 136 v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 136 TSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9998764 3 3489999987
No 469
>PRK01156 chromosome segregation protein; Provisional
Probab=98.76 E-value=1.3e-08 Score=134.48 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=64.5
Q ss_pred CCCcCChHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc---CC-cEEEEEccCcchhhcc
Q 000905 716 RGLNLSGGQKQRIQL------ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL---EK-KTVILVTHQVEFLSEV 785 (1231)
Q Consensus 716 ~G~~LSGGQkQRIaL------ARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l---~~-kTvIlvTH~l~~l~~a 785 (1231)
.+..||||||+|++| ||+++++|++++|||||++||+.....+.+ .+...+ .+ .|+|+|||+.+++..|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~-~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKD-IIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 456899999999975 599999999999999999999999888653 454322 22 5899999999999999
Q ss_pred CeEEEEe
Q 000905 786 DRILVLE 792 (1231)
Q Consensus 786 D~Iivl~ 792 (1231)
|+|+.++
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 470
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.68 E-value=9.1e-08 Score=123.73 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=54.9
Q ss_pred HhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHh-cCCcEEEEEccCcchh----------hccCeEEEEeCCeEeEecC
Q 000905 734 VYNDADIYLFDDPFSAV-DAHTAATLFNECVMAA-LEKKTVILVTHQVEFL----------SEVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 734 ly~~~~IllLDep~Sal-D~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l----------~~aD~Iivl~~G~I~~~Gt 801 (1231)
+..+|.++++|||+++| |+...+.+ .+.++.. .+|.++|++||+++.+ ..||..++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i-~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKI-REWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 36799999999999999 67777665 4555543 4588999999999875 4799999999999987764
Q ss_pred h
Q 000905 802 Y 802 (1231)
Q Consensus 802 ~ 802 (1231)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 471
>PRK03918 chromosome segregation protein; Provisional
Probab=98.68 E-value=3.1e-08 Score=130.93 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=64.1
Q ss_pred CCcCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEE
Q 000905 717 GLNLSGGQKQ------RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRIL 789 (1231)
Q Consensus 717 G~~LSGGQkQ------RIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Ii 789 (1231)
...||||||| |++|||++..+|+++||||||+++|+....++.+ .+.... .+.|+|+|||+.++...||+++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~-~l~~~~~~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVD-IMERYLRKIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHhCCeEE
Confidence 3579999999 5566678889999999999999999999988764 555443 4679999999999888999999
Q ss_pred EEe
Q 000905 790 VLE 792 (1231)
Q Consensus 790 vl~ 792 (1231)
+|+
T Consensus 865 ~l~ 867 (880)
T PRK03918 865 RVS 867 (880)
T ss_pred EEE
Confidence 997
No 472
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.66 E-value=4.5e-08 Score=106.64 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=83.0
Q ss_pred CCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCC-CcEEEEcC---eEEEEeCCCcCC-CCCHHHHHhcCCCC
Q 000905 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYG---SIAYVSQTSWIQ-SGSIRDNILYGKPM 684 (1231)
Q Consensus 610 ~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~-~G~I~v~g---~iayv~Q~~~lf-~~TIreNI~fg~~~ 684 (1231)
+++-+|++++.++|++++|.||+|+||||+++.+.+..-.. -|. .+.. +++++. .|| .-.-.||+..|..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~-~vpa~~~~i~~~~---~i~~~~~~~d~~~~~~S- 91 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-DVPAKSMRLSLVD---RIFTRIGARDDIMKGES- 91 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC-ccCccccEecccc---EEEEecCcccccccCcc-
Confidence 47899999999999999999999999999999887542111 111 0000 111110 111 1122223322211
Q ss_pred CHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000905 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764 (1231)
Q Consensus 685 ~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~ 764 (1231)
++. .+-+|++-.=....+++++|||||.++.|+..+..+....+.
T Consensus 92 ----------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~ 136 (218)
T cd03286 92 ----------------------------------TFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLE 136 (218)
T ss_pred ----------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHH
Confidence 110 122233211112257899999999999999998888765455
Q ss_pred HhcC--CcEEEEEccCcchhhc
Q 000905 765 AALE--KKTVILVTHQVEFLSE 784 (1231)
Q Consensus 765 ~~l~--~kTvIlvTH~l~~l~~ 784 (1231)
.+.+ +.++|++||..+....
T Consensus 137 ~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 137 YLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHhcCCcEEEEeccHHHHHH
Confidence 4443 7899999999887544
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.64 E-value=5.6e-08 Score=104.87 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=78.7
Q ss_pred EEEEECcCCCChHHHHHHHhCCCcCC-CcEEEE-cCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHH
Q 000905 625 KIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNL-YGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1231)
Q Consensus 625 ~vaIvG~sGSGKSTLl~~Llg~~~~~-~G~I~v-~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di 702 (1231)
++.|+||+||||||++++|++++++. .|.|.. ...+-|..+.. .| .+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~---------------------------~~----~i 51 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK---------------------------RS----LI 51 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc---------------------------cc----ee
Confidence 68999999999999999999999754 455432 22221111100 00 00
Q ss_pred hcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchh
Q 000905 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782 (1231)
Q Consensus 703 ~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l 782 (1231)
.+.++|....+++. ++++|+..+||++++||+. |.++... +++....|.+++.++|..+..
T Consensus 52 ------~q~~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~----~l~~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 52 ------NQREVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRL----ALTAAETGHLVMSTLHTNSAA 112 (198)
T ss_pred ------eecccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHH----HHHHHHcCCEEEEEecCCcHH
Confidence 01233433333322 5889999999999999996 6665443 334445789999999999988
Q ss_pred hccCeEEEEe
Q 000905 783 SEVDRILVLE 792 (1231)
Q Consensus 783 ~~aD~Iivl~ 792 (1231)
...||++.|-
T Consensus 113 ~~~~Rl~~l~ 122 (198)
T cd01131 113 KTIDRIIDVF 122 (198)
T ss_pred HHHhHHHhhc
Confidence 8889987774
No 474
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=7.3e-08 Score=128.75 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=65.9
Q ss_pred CCcCChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhh-c
Q 000905 717 GLNLSGGQKQRIQLARAVYN----------DADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-E 784 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~----------~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~-~ 784 (1231)
-.+||||+++|++||+|+.. +|++++|||||++||+++...+++ ++..+ -.|+||++|||..+... .
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG-ILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 46899999999999999985 799999999999999999988764 55543 26899999999999764 5
Q ss_pred cCeEEEEeCC
Q 000905 785 VDRILVLEGG 794 (1231)
Q Consensus 785 aD~Iivl~~G 794 (1231)
+|+|.|+++|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 8999999754
No 475
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=1.9e-07 Score=110.40 Aligned_cols=167 Identities=18% Similarity=0.180 Sum_probs=114.5
Q ss_pred EEEEeeeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCH
Q 000905 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1231)
Q Consensus 595 I~~~~~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TI 674 (1231)
++-++++-.+.. ...++++ .+++.+|++++|+|++|+|||||++.|.|..+++.|.|. ++.|.. -++
T Consensus 131 ~~r~~i~~~l~T--GiraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~------~iGerg----~ev 197 (432)
T PRK06793 131 FEREEITDVFET--GIKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVIS------LVGERG----REV 197 (432)
T ss_pred hheechhhccCC--CCEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEE------eCCCCc----ccH
Confidence 444455544432 2457777 499999999999999999999999999999998877553 444443 344
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHh-------cCCCEEEEeCCC
Q 000905 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY-------NDADIYLFDDPF 747 (1231)
Q Consensus 675 reNI~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly-------~~~~IllLDep~ 747 (1231)
+|.+. +.++..++. .|.+=..-.+-|.|+|+|++.+.+.. .++-++++||+|
T Consensus 198 ~e~~~-----------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 198 KDFIR-----------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHH-----------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 44432 122221111 22222455778999999999998887 678899999999
Q ss_pred CCCCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhccCeEEEEeCCeEeEecC
Q 000905 748 SAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1231)
Q Consensus 748 SalD~~t~~~i~~~~i~~~l-~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~Gt 801 (1231)
...|+..+ | ...+.+.- .|.|..+.||..+.+.++-+ .++|.|...++
T Consensus 257 r~a~A~re--i-sl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 257 RFADARRS--V-DIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHHHHHH--H-HHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 99999733 3 22332222 47888888996566666665 37899887665
No 476
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.7e-06 Score=95.20 Aligned_cols=256 Identities=11% Similarity=0.141 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHhcCccccccc---cCccchhhhhcCccccccCCcHHHHHHHHHHHHHHHHHHHHHH-hhhHHHH
Q 000905 963 GLKASKAFFSGFTNSIFKAPMLFFDS---TPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT-FVTWQVL 1038 (1231)
Q Consensus 963 ~~~as~~lh~~~l~~vlrapm~FFD~---tP~GrIlNRfS~D~~~iD~~lp~~l~~~~~~~~~~l~~i~vi~-~~~~~~~ 1038 (1231)
+-.|-+.+--+-+.++..-.|.|.-+ -|.-|.+.|=++-++.+-. ..+...+-..+.+.-.+++.. ...|++.
T Consensus 10 ~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~---~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~ 86 (497)
T COG5265 10 GQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILR---WILFNILPTLVEISLVAVILWRVYGWWFA 86 (497)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHH---HHHHHhhHHHHHHHHHHHHHHhhcccHHH
Confidence 33444444445556677777777754 4666777777777766532 333333333333333333322 3467777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcchhhccccHHHHHHHHHHHhhhhhchHHHHHHHh
Q 000905 1039 VVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVM 1118 (1231)
Q Consensus 1039 ~~~ipl~~~~~~~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~tIRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~ 1118 (1231)
.+.+.-+++|.++--.-..---+.||.-..+.|-..+.--+++-.-.|++-||.|+.+..++...++...++.-....+-
T Consensus 87 ~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl 166 (497)
T COG5265 87 LTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSL 166 (497)
T ss_pred HHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHH
Confidence 77666666655433222111223455555555666778889999999999999999999999999999888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HhcCCCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHhhhc
Q 000905 1119 EWLILRVEALQNLTLFTAALFLV------LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192 (1231)
Q Consensus 1119 rWl~~rl~~i~~~~~~~~a~~~v------~~~~~~~~~g~~Gl~lsyal~l~~~l~~~vr~~~~lE~~m~SvERi~eY~~ 1192 (1231)
-||++--..+ +.+++... -...+.++.|-+-+.-.|..|++..++.+-..+.|+-+..+-.|++.+..+
T Consensus 167 ~~Ln~gQ~~I-----~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 167 LVLNFGQTAI-----FSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHhhHHH-----HHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 7776543332 22222211 123567889999899999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCeEEEEeEEEEecCCC
Q 000905 1193 IPPEPPAIVEDKRPPSSWP-FKGRIELRQLKVSLHMEL 1229 (1231)
Q Consensus 1193 l~~E~~~~~~~~~pp~~WP-~~G~I~f~~v~~rYr~~l 1229 (1231)
.+.|-. +....|+=|| ..|.|.|+||++.|.|.-
T Consensus 242 ~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r 276 (497)
T COG5265 242 VEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR 276 (497)
T ss_pred cchhhc---cCCCCccccccccceEEEEEEEeeccccc
Confidence 777653 2233456686 458999999999997754
No 477
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.59 E-value=9.1e-07 Score=88.31 Aligned_cols=118 Identities=25% Similarity=0.287 Sum_probs=83.8
Q ss_pred CCeEEEEECcCCCChHHHHHHHhCCCcCCC-cEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchH
Q 000905 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700 (1231)
Q Consensus 622 ~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~-G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~ 700 (1231)
+|..+.|+||+||||||+++.|++.+.... +-+.++.... ........+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI-------LEEVLDQLL----------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc-------cccCHHHHH-----------------------
Confidence 477899999999999999999999988765 3444433211 111111110
Q ss_pred HHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHhcCCcEEEE
Q 000905 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN------ECVMAALEKKTVIL 774 (1231)
Q Consensus 701 di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~------~~i~~~l~~kTvIl 774 (1231)
....++......+++.++..+++|-+.+++++++||+....+......... ........+..+|.
T Consensus 51 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 121 (148)
T smart00382 51 ---------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121 (148)
T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEE
Confidence 334456667888999999999999999999999999999999988776542 11123345778888
Q ss_pred EccC
Q 000905 775 VTHQ 778 (1231)
Q Consensus 775 vTH~ 778 (1231)
++|.
T Consensus 122 ~~~~ 125 (148)
T smart00382 122 TTND 125 (148)
T ss_pred EeCC
Confidence 8884
No 478
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.59 E-value=5.2e-08 Score=133.05 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCCCcCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEE
Q 000905 715 QRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1231)
Q Consensus 715 e~G~~LSGGQkQRIaLARAl----y~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iiv 790 (1231)
.....||||||||++|||++ +++|+++|||||+++||+.....+. +.+....++.|+|+|||+++.+..||+++.
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~-~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFA-NLLKEFSKNTQFIVITHNKGTMEVADQLYG 1163 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHH-HHHHHhccCCEEEEEEcChhHHHHhhhHee
Confidence 34568999999999999998 5788999999999999999988875 567666677899999999999999999875
Q ss_pred E
Q 000905 791 L 791 (1231)
Q Consensus 791 l 791 (1231)
+
T Consensus 1164 ~ 1164 (1179)
T TIGR02168 1164 V 1164 (1179)
T ss_pred e
Confidence 5
No 479
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.58 E-value=4.7e-07 Score=93.63 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=79.3
Q ss_pred EEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhc
Q 000905 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704 (1231)
Q Consensus 625 ~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L~~di~~ 704 (1231)
.++|+|++|+||||+++.+++...+.. +.+.|++++.-.- ...++.. . . ....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~------~~v~~~~~e~~~~--~~~~~~~---------------~--~--~~~~ 53 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKG------GKVVYVDIEEEIE--ELTERLI---------------G--E--SLKG 53 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcC------CEEEEEECCcchH--HHHHHHh---------------h--h--hhcc
Confidence 368999999999999999999887643 4566776653211 1111110 0 0 0000
Q ss_pred CCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHhc-CCcEEE
Q 000905 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----------HTAATLFNECVMAAL-EKKTVI 773 (1231)
Q Consensus 705 lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~----------~t~~~i~~~~i~~~l-~~kTvI 773 (1231)
.+ +....+......-+.++.+++..+++...+++++++||+++-+|. ...+.+ .+...... .+.|+|
T Consensus 54 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~~~vv 131 (165)
T cd01120 54 AL-DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEEL-RELLERARKGGVTVI 131 (165)
T ss_pred cc-ccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHhcCCceEE
Confidence 11 111222233334456677788999999999999999999965444 433433 33332222 489999
Q ss_pred EEccCcchh
Q 000905 774 LVTHQVEFL 782 (1231)
Q Consensus 774 lvTH~l~~l 782 (1231)
+++|.....
T Consensus 132 ~~~~~~~~~ 140 (165)
T cd01120 132 FTLQVPSGD 140 (165)
T ss_pred EEEecCCcc
Confidence 999987543
No 480
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.52 E-value=6.2e-08 Score=113.86 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=43.5
Q ss_pred CceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCc-EEEEcCe
Q 000905 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG-TVNLYGS 659 (1231)
Q Consensus 611 ~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G-~I~v~g~ 659 (1231)
.+|++||+++++||.++|+|||||||||||+ .|..+|.+| +|.++|.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~ 67 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT 67 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence 5899999999999999999999999999999 777888888 7999985
No 481
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.48 E-value=2.7e-07 Score=102.54 Aligned_cols=63 Identities=25% Similarity=0.349 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchh
Q 000905 719 NLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFL 782 (1231)
Q Consensus 719 ~LSGGQkQRIaLARAly~~~---~IllLDep~SalD~~t~~~i~~~~i~~~l~-~kTvIlvTH~l~~l 782 (1231)
.+|.|+||.+.|+-+++..+ .++++|||-++|+|+..+.++ +.+....+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEeCccchhc
Confidence 46999999999999998876 899999999999999999987 45665554 78999999998765
No 482
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.46 E-value=4.8e-07 Score=105.01 Aligned_cols=84 Identities=23% Similarity=0.173 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEeeeEeeCCCCCCCcee-----------eEEEEeeCCeEEEE
Q 000905 560 IQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLR-----------GVNLDIKWAQKIAV 628 (1231)
Q Consensus 560 ~~a~vs~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~y~~~~~~~~L~-----------~inl~i~~Ge~vaI 628 (1231)
.++..+.+|+.+++..+..+.. ++....+.+.|+|++|.||.+ +++|+ |+++.|.+|+.++|
T Consensus 101 ~R~~~~~ER~~~Ll~v~~vn~~-----~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 101 IRSPKEGERYFALLKVESVNGD-----DPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred EeccccHhHHHHHhCCCccCCC-----CccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 4456778999999875543221 112234679999999999854 47897 99999999999999
Q ss_pred ECcCCCChHHHHHHHhCCCcCC
Q 000905 629 CGSVGAGKSSLLYAILGEIPKI 650 (1231)
Q Consensus 629 vG~sGSGKSTLl~~Llg~~~~~ 650 (1231)
+||+|||||||+++|.+.+...
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred ECCCCCChhHHHHHHHHhhccc
Confidence 9999999999999999988654
No 483
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.44 E-value=2.2e-06 Score=95.16 Aligned_cols=148 Identities=17% Similarity=0.098 Sum_probs=88.2
Q ss_pred EeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHH-hcCCCCCHHHHHHHHHHhc
Q 000905 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACA 697 (1231)
Q Consensus 619 ~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI-~fg~~~~~~~~~~vl~~~~ 697 (1231)
-+++|+.+.|.|++|||||+|...++-+.-. + ++++.|+..+--. ..+.+|. .+|-+.++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-----g~~~~y~~~e~~~--~~~~~~~~~~g~~~~~----------- 81 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q-----GKKVYVITTENTS--KSYLKQMESVKIDISD----------- 81 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C-----CCEEEEEEcCCCH--HHHHHHHHHCCCChhH-----------
Confidence 4899999999999999999999998633211 1 2467777763211 1122222 22221111
Q ss_pred chHHHhcCCCCCccccc---CCCCcCChHHHHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHHHHHH-hcC
Q 000905 698 LDKDINNFDHGDLTEIG---QRGLNLSGGQKQRIQLARAVYN--DADIYLFDDPFSAVD---AHTAATLFNECVMA-ALE 768 (1231)
Q Consensus 698 L~~di~~lp~G~~T~IG---e~G~~LSGGQkQRIaLARAly~--~~~IllLDep~SalD---~~t~~~i~~~~i~~-~l~ 768 (1231)
. +..|....+. +.....|.++++.+...+..+. +|+++++|+|++.+| .+.-..+++ .+.. ..+
T Consensus 82 ---~---~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~ 154 (234)
T PRK06067 82 ---F---FLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDL 154 (234)
T ss_pred ---H---HhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhC
Confidence 0 0112111111 1223457789999999999997 999999999996544 433333332 2322 235
Q ss_pred CcEEEEEccCcchh--------hccCeEEEEe
Q 000905 769 KKTVILVTHQVEFL--------SEVDRILVLE 792 (1231)
Q Consensus 769 ~kTvIlvTH~l~~l--------~~aD~Iivl~ 792 (1231)
+.|+++++|..... .-+|-++.|+
T Consensus 155 g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 155 GKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred CCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 88999999976542 1246666665
No 484
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.42 E-value=3.5e-07 Score=124.86 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=65.3
Q ss_pred CCcCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeEEEEe
Q 000905 717 GLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly----~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~ 792 (1231)
...||||||++++||+++. .+||+++||||+++||+.....+. +.+....++.++|+|||+...+..||+++.+.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~-~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVA-KLIREKAGEAQFIVVSLRSPMIEYADRAIGVT 1150 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHH-HHHHHhcCCCeEEEEECcHHHHHhcceeEeEE
Confidence 3479999999999999997 578999999999999999888765 46666666788999999999999999998764
No 485
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00011 Score=86.90 Aligned_cols=279 Identities=14% Similarity=0.146 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccchhhhhcCccccccCCcHHHHH
Q 000905 935 GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014 (1231)
Q Consensus 935 ~~~l~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~~l~~vlrapm~FFD~tP~GrIlNRfS~D~~~iD~~lp~~l~ 1014 (1231)
..-+..|++..+++.+|..++.+.++....++-|....+.+...+...++||..-.+|.+-++..+-...|-..+-..+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 34567799999999999999999999999999999999999999999999999888775544443333333222222222
Q ss_pred HHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHhhcccchHHHHHHHhhcCcch
Q 000905 1015 FVAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRF-------VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVT 1086 (1231)
Q Consensus 1015 ~~~~~~~~~l~~i~vi~-~~~~~~~~~~ipl~~~~~~-------~~~~Y~~tsRelkRl~s~srSPi~s~f~Etl~Gl~t 1086 (1231)
.++-..+.+....+.+. -..+.+.++++.....|.. .+..|+ |+..+-|. -.-.-.-|++..-.+
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR---~~~N~Adn----~as~~~~dsL~Nye~ 226 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFR---KAMNNADN----SASRRAYDSLINYEI 226 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHH---HHHHhhhh----HHHHHHHHHHhhHHH
Confidence 22222222222221111 1233444333333333311 122222 22222222 223456789999999
Q ss_pred hhccccHHHHHHHHHHHhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-c----CCCcChhHHHHHHHHHH
Q 000905 1087 IRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI-P----RGYVAPGLVGLSLSYAF 1161 (1231)
Q Consensus 1087 IRAf~~~~~f~~~~~~~lD~~~~~~~~~~~~~rWl~~rl~~i~~~~~~~~a~~~v~~-~----~~~~~~g~~Gl~lsyal 1161 (1231)
|++|+.|++=.++++..+...-++.-.. .+|+++ +++.+..+..++..++..+ . .+.++-|-.=+.-+...
T Consensus 227 VKsfNnE~~Ea~~y~~~l~~~~~~~~~~---~~sl~~-lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~ 302 (591)
T KOG0057|consen 227 VKSFNNEEYEASRYDGSLKTYERAGLKY---SSSLAF-LNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLF 302 (591)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHhhhhH---HhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHH
Confidence 9999999998888888877666554333 456664 4666666554444333322 1 23444555555666667
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCeEEEEeEEEEecCCC
Q 000905 1162 TLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHMEL 1229 (1231)
Q Consensus 1162 ~l~~~l~~~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~~v~~rYr~~l 1229 (1231)
++...++.+-..+.++-.+++=.+-...- .+.+.. +.+. |++-=+..|.|+|+||++.|.|+-
T Consensus 303 qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l--~~~~~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k~ 365 (591)
T KOG0057|consen 303 QLSLPLNFLGSVYRELRQALTDMRTLFIL--LEVDED--IQEA-ALPIELFGGSIEFDDVHFSYGPKR 365 (591)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHHHhh--hhhhhh--hhhc-cCCcccCCCcEEEEeeEEEeCCCC
Confidence 77777887777777776666555444322 111111 1111 122223468899999999998874
No 486
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.36 E-value=3.2e-06 Score=98.19 Aligned_cols=172 Identities=22% Similarity=0.247 Sum_probs=116.2
Q ss_pred eeEeeCCCCCCCceeeEEEEeeCCeEEEEECcCCCChHHHHHHHh-CCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHH
Q 000905 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-GEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNI 678 (1231)
Q Consensus 600 ~sf~y~~~~~~~~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Ll-g~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI 678 (1231)
++|.-|.. -.+++ +-||+| .+.|||..=-||||||++|. |-|+..-| ||+=-.|.-..- ..||
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~VVT~~~a---vkir--- 290 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREFVVTDPDA---VKIR--- 290 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceEEEECCCc---eEEE---
Confidence 55555432 13443 568999 99999999999999999997 78876655 332111111000 0000
Q ss_pred hcCCCCCHHHHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 000905 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758 (1231)
Q Consensus 679 ~fg~~~~~~~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i 758 (1231)
..+ -+.++.+.+..||..||.|.+|. ----.|=||---|=-+|..|+-..+++||+||=|||----.....
T Consensus 291 -----AED---GR~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~r 361 (448)
T PF09818_consen 291 -----AED---GRSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDER 361 (448)
T ss_pred -----ecC---CceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHH
Confidence 000 12456678899999999999987 333457799999999999999999999999999999643332222
Q ss_pred HHHHH--------------HHh--cCCcEEEEEccCc-chhhccCeEEEEeCCeE
Q 000905 759 FNECV--------------MAA--LEKKTVILVTHQV-EFLSEVDRILVLEGGQI 796 (1231)
Q Consensus 759 ~~~~i--------------~~~--l~~kTvIlvTH~l-~~l~~aD~Iivl~~G~I 796 (1231)
+++++ +.+ ..|-++|+|+-.. .++..||+|++||+=+.
T Consensus 362 Mq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 362 MQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 22222 111 1477777777665 47899999999998553
No 487
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.33 E-value=8.5e-07 Score=117.96 Aligned_cols=75 Identities=25% Similarity=0.324 Sum_probs=61.4
Q ss_pred CCcCChHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhcc-C
Q 000905 717 GLNLSGGQKQRIQLARAVYN--------DADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEV-D 786 (1231)
Q Consensus 717 G~~LSGGQkQRIaLARAly~--------~~~IllLDep~SalD~~t~~~i~~~~i~~~-l~~kTvIlvTH~l~~l~~a-D 786 (1231)
..+|||||++|++||||+.. +|++++|||||++||+.+-..+. +.+..+ -.|+||++|||........ .
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~-~~l~~l~~~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTAL-DALDALNASGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCEEEEEecHHHHHHhccc
Confidence 46899999999999999995 89999999999999999999876 456554 3689999999966665554 4
Q ss_pred eEEEEe
Q 000905 787 RILVLE 792 (1231)
Q Consensus 787 ~Iivl~ 792 (1231)
+|.|-.
T Consensus 1026 qi~V~k 1031 (1047)
T PRK10246 1026 QIKVKK 1031 (1047)
T ss_pred eEEEEE
Confidence 555554
No 488
>PRK02224 chromosome segregation protein; Provisional
Probab=98.31 E-value=9.9e-07 Score=116.66 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=63.1
Q ss_pred CcCChHHHH------HHHHHHHHhcC------CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEccCcchhh
Q 000905 718 LNLSGGQKQ------RIQLARAVYND------ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EK-KTVILVTHQVEFLS 783 (1231)
Q Consensus 718 ~~LSGGQkQ------RIaLARAly~~------~~IllLDep~SalD~~t~~~i~~~~i~~~l-~~-kTvIlvTH~l~~l~ 783 (1231)
..||||||| |+++||++..+ ++++||||||+++|+.....+. +.+.... .| .++|+|||+.+.+.
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~-~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLV-DLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHH-HHHHHHHhcCCCeEEEEECChHHHH
Confidence 489999999 99999999863 2679999999999999988875 3454433 24 48999999999999
Q ss_pred ccCeEEEEeCC
Q 000905 784 EVDRILVLEGG 794 (1231)
Q Consensus 784 ~aD~Iivl~~G 794 (1231)
.||+++.|...
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 99999999643
No 489
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.30 E-value=1.1e-06 Score=102.88 Aligned_cols=123 Identities=23% Similarity=0.227 Sum_probs=81.4
Q ss_pred eeCCeEEEEECcCCCChHHHHHHHhCCCcCC-CcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcc
Q 000905 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL 698 (1231)
Q Consensus 620 i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~-~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~~~~~~vl~~~~L 698 (1231)
.+++..+.|+||+||||||+++++++.+++. +|.|. .+.+.+-+. .+.. .+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~------tiEdp~E~~-----------~~~~---------~~-- 170 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHII------TIEDPIEYV-----------HRNK---------RS-- 170 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEE------EEcCChhhh-----------ccCc---------cc--
Confidence 4578999999999999999999999988743 45443 221111000 0000 00
Q ss_pred hHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccC
Q 000905 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778 (1231)
Q Consensus 699 ~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~ 778 (1231)
.+ .+.++|..+.+ -.=++++|+-++||++++||+. |.++....+ .....|.+++.+.|.
T Consensus 171 --~i------~q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l----~aa~tGh~v~~T~Ha 229 (343)
T TIGR01420 171 --LI------NQREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELAL----TAAETGHLVFGTLHT 229 (343)
T ss_pred --eE------EccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHH----HHHHcCCcEEEEEcC
Confidence 00 11233433222 2345888999999999999997 888876544 344578999999999
Q ss_pred cchhhccCeEEEE
Q 000905 779 VEFLSEVDRILVL 791 (1231)
Q Consensus 779 l~~l~~aD~Iivl 791 (1231)
.+.....||++-|
T Consensus 230 ~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 230 NSAAQTIERIIDV 242 (343)
T ss_pred CCHHHHHHHHHHh
Confidence 8888777877655
No 490
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.29 E-value=3.3e-07 Score=98.78 Aligned_cols=100 Identities=25% Similarity=0.295 Sum_probs=74.0
Q ss_pred EEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCH--HHHHh----cCCCCCHHHHHHHHHHhcc
Q 000905 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI--RDNIL----YGKPMDKARYDKAIKACAL 698 (1231)
Q Consensus 625 ~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TI--reNI~----fg~~~~~~~~~~vl~~~~L 698 (1231)
+++|+|++|||||||++.+++++++..|-..+...+++..|.+|+.+.++ +||+. =|.+....+++.+...|+|
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L 82 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEAV 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHHH
Confidence 68999999999999999999998876554444455555555555554432 33442 1345556677788889999
Q ss_pred hHHHhcCCCCCcccccCCCCcCChHH
Q 000905 699 DKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1231)
Q Consensus 699 ~~di~~lp~G~~T~IGe~G~~LSGGQ 724 (1231)
.+++..+|++|.+.|+..|.++|.--
T Consensus 83 ~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 83 AEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHhcCCCCCEEEEECCCCCccccc
Confidence 99888889999999999998776655
No 491
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.19 E-value=1.9e-05 Score=81.27 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=93.7
Q ss_pred eEEEEECcCCCChHHHHHHHhCCCc--CCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhcCC--CC------CHHHHHHHH
Q 000905 624 QKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK--PM------DKARYDKAI 693 (1231)
Q Consensus 624 e~vaIvG~sGSGKSTLl~~Llg~~~--~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~fg~--~~------~~~~~~~vl 693 (1231)
.++.|+|.+||||||||.+|.--+. +..|.=...| +.......+.+|+..-. +. -.|..-.++
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~-------~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~a 110 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKG-------ELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVA 110 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCc-------ccccccchHHHhHHHhhcCCCCcceEEehhHHHHHH
Confidence 3789999999999999999874432 2223211111 11222345566665421 11 223333333
Q ss_pred HHhcchHHHhcCCCCCcccccCCCC---cCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCC
Q 000905 694 KACALDKDINNFDHGDLTEIGQRGL---NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEK 769 (1231)
Q Consensus 694 ~~~~L~~di~~lp~G~~T~IGe~G~---~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~t~~~i~~~~i~~-~l~~ 769 (1231)
. -.+|+.. +.+-+|. .-|-|+-=-=-+.|.+ .+.-||+||||-|||-+.-.-.+... +.. ...|
T Consensus 111 s---~~De~~~-------e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~-l~~la~sG 178 (233)
T COG3910 111 S---YLDEADG-------EANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAI-LRDLADSG 178 (233)
T ss_pred H---HHHhhhh-------hcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHH-HHHHHhcC
Confidence 3 1122221 1112233 3477776544444544 56789999999999999876665432 332 3468
Q ss_pred cEEEEEccCcchhhc-cCeEEEEeCCeEeEecChHHH
Q 000905 770 KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 770 kTvIlvTH~l~~l~~-aD~Iivl~~G~I~~~Gt~~eL 805 (1231)
.-+|++||.+=.+.. --.|+-++.|.+ +.-+|+|.
T Consensus 179 aQ~IiATHSPiLlAiP~A~I~~~~~~g~-~~~~fe~t 214 (233)
T COG3910 179 AQIIIATHSPILLAIPGAEIYEISESGI-EERDFEET 214 (233)
T ss_pred CeEEEEecChhheeCCCcEEEEEecCCc-cccchHHH
Confidence 899999999876533 347777777664 44456654
No 492
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.17 E-value=1.4e-06 Score=104.64 Aligned_cols=142 Identities=14% Similarity=0.175 Sum_probs=88.1
Q ss_pred eEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHHhc-CC----CC--CHH
Q 000905 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILY-GK----PM--DKA 687 (1231)
Q Consensus 615 ~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI~f-g~----~~--~~~ 687 (1231)
+.+..+++|+.+++|||+|+||||++.-|.+.+...+|.. +|+++++|+ |..+..||+.+ ++ +. .++
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~----kV~LI~~Dt--~RigA~EQLr~~AeilGVpv~~~~~ 321 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS----KVALLTTDS--YRIGGHEQLRIYGKILGVPVHAVKD 321 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC----eEEEEeCCc--cchhHHHHHHHHHHHhCCCeeccCC
Confidence 3444456799999999999999999999999987777642 678999998 77888999974 32 21 111
Q ss_pred HHHHHHHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCC-----CEEEEeCCCCCCCHHHHHHHHHHH
Q 000905 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA-----DIYLFDDPFSAVDAHTAATLFNEC 762 (1231)
Q Consensus 688 ~~~~vl~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~-----~IllLDep~SalD~~t~~~i~~~~ 762 (1231)
..+ +...+..+.+.+...|..-|.+-. ...+.-+.+.++++ .+|+||..+..-|.....+-|
T Consensus 322 ~~D-------l~~aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f--- 388 (484)
T PRK06995 322 AAD-------LRLALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAY--- 388 (484)
T ss_pred chh-------HHHHHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHh---
Confidence 111 122344556667777777553211 11233334444444 688998888764432221111
Q ss_pred HHHhcCCcEEEEEccC
Q 000905 763 VMAALEKKTVILVTHQ 778 (1231)
Q Consensus 763 i~~~l~~kTvIlvTH~ 778 (1231)
. ..+.+-+++|+-
T Consensus 389 -~--~~~~~g~IlTKl 401 (484)
T PRK06995 389 -R--GPGLAGCILTKL 401 (484)
T ss_pred -c--cCCCCEEEEeCC
Confidence 1 135666777774
No 493
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.15 E-value=2e-06 Score=92.86 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=70.1
Q ss_pred EEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcCeEEEEeCCCcCCCCCHHHHH-----hcC--CCCCHHHHHHHHHHhc
Q 000905 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNI-----LYG--KPMDKARYDKAIKACA 697 (1231)
Q Consensus 625 ~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g~iayv~Q~~~lf~~TIreNI-----~fg--~~~~~~~~~~vl~~~~ 697 (1231)
+++|+|++|||||||.+.|.+.+. .+.+.+++++.+...-+.+++- .++ .+++.+.+.+.++...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~--------~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 72 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--------NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLK 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--------CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHH
Confidence 479999999999999999999872 2456778888776544433322 222 2345455544444333
Q ss_pred chHHHhcCCCCCcccccCCCCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 000905 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753 (1231)
Q Consensus 698 L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLARAly~~~~IllLDep~SalD~~ 753 (1231)
. |.. +--...+.|.|++++-.+ ...+++++|+|.|+...++.
T Consensus 73 ~---------~~~--~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 73 N---------GKS--VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred C---------CCC--EeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 2 221 223345677777776554 56889999999999988763
No 494
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=3e-06 Score=99.77 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=53.4
Q ss_pred CcCChHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh
Q 000905 718 LNLSGGQKQRIQLARAVYN---------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1231)
Q Consensus 718 ~~LSGGQkQRIaLARAly~---------~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~ 783 (1231)
..+|+||++++.||.++.. +|+|+|||||+|.||++..+.+++ .+... |.+++++||+++.++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~-~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAE-LLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHH-HHhhc--CCEEEEEecChhhcc
Confidence 3689999999999999999 999999999999999998887764 34322 679999999987654
No 495
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.14 E-value=4.4e-06 Score=93.04 Aligned_cols=126 Identities=22% Similarity=0.337 Sum_probs=71.8
Q ss_pred CeEEEEECcCCCChHHHHHHHhCCCc---CCCc---EEEEcCeEEEEeCCCcCCCCCHHHHHhcCCCCCH----HHHHHH
Q 000905 623 AQKIAVCGSVGAGKSSLLYAILGEIP---KISG---TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDK----ARYDKA 692 (1231)
Q Consensus 623 Ge~vaIvG~sGSGKSTLl~~Llg~~~---~~~G---~I~v~g~iayv~Q~~~lf~~TIreNI~fg~~~~~----~~~~~v 692 (1231)
|....|+||.|+|||+|..-+.=-+- +.-| ...-.|++-|+. .+.+. +|+.++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~-----------------~Ed~~~~i~~Rl~~i 63 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS-----------------AEDPREEIHRRLEAI 63 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE-----------------CCCCHHHHHHHHHHH
Confidence 67889999999999999987752110 0001 011123455543 12222 344444
Q ss_pred HHHhcchHHHhcCCCCCcccccCCCCcCChHHHHHHHHHH----------------HHhcCCCEEEEeCCCCC------C
Q 000905 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR----------------AVYNDADIYLFDDPFSA------V 750 (1231)
Q Consensus 693 l~~~~L~~di~~lp~G~~T~IGe~G~~LSGGQkQRIaLAR----------------Aly~~~~IllLDep~Sa------l 750 (1231)
.+.+++.+ +++. .-..+|+.|++.+++ +...+|+++++| |+++ .
T Consensus 64 ~~~~~~~~----~~~r---------l~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~ 129 (239)
T cd01125 64 LQHLEPDD----AGDR---------LFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSEN 129 (239)
T ss_pred HhhcCCcC----cccc---------eEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcC
Confidence 44443211 1111 011245666666554 345799999999 8865 6
Q ss_pred CHHHHHHHHHHHHHHhc--CCcEEEEEccCcc
Q 000905 751 DAHTAATLFNECVMAAL--EKKTVILVTHQVE 780 (1231)
Q Consensus 751 D~~t~~~i~~~~i~~~l--~~kTvIlvTH~l~ 780 (1231)
|+...+.+++ .+.... .+.|+|+++|...
T Consensus 130 d~~~~~~~~~-~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 130 DNGAMDAVIK-ALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CHHHHHHHHH-HHHHHHHHhCCEEEEEeccCc
Confidence 8877776664 343332 4789999999753
No 496
>PRK01889 GTPase RsgA; Reviewed
Probab=98.13 E-value=4e-06 Score=98.45 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=71.3
Q ss_pred eeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC----------eEEEEeCCCcCCCCCHHHHHhcCC
Q 000905 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQTSWIQSGSIRDNILYGK 682 (1231)
Q Consensus 613 L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g----------~iayv~Q~~~lf~~TIreNI~fg~ 682 (1231)
++.+.-.+++|++++++|++|+|||||+++|+|+..+..|+|..++ .+.+++|..++++..-..|+.+..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~~ 264 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWD 264 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhcccC
Confidence 5556666889999999999999999999999999999999998864 589999999999988888887765
Q ss_pred CCC-----HHHHHHHHHHhcch
Q 000905 683 PMD-----KARYDKAIKACALD 699 (1231)
Q Consensus 683 ~~~-----~~~~~~vl~~~~L~ 699 (1231)
+.. ...+.+..+.|...
T Consensus 265 ~~~~l~~~f~~~~~~~~~c~f~ 286 (356)
T PRK01889 265 AEDGVEETFSDIEELAAQCRFR 286 (356)
T ss_pred chhhHHHhHHHHHHHHccCCCC
Confidence 421 13566667777654
No 497
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.11 E-value=0.0076 Score=65.14 Aligned_cols=176 Identities=15% Similarity=0.117 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1231)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1231)
+.++|.|++.+.....+.+..+++.++.|++.+..||-+-+++ ......++++.++..++.+. .+. .-.|+-.|
T Consensus 2 k~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~--~~~~~~~~~~~l~~~~igaa-RR~---~DTRvf~r 75 (237)
T PF13748_consen 2 KAIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGD--VWQALMYAALVLLMWAIGAA-RRI---YDTRVFSR 75 (237)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHhhh-hHH---HhhHHHHH
Confidence 5788999999999999999999999999999999999876543 33333444333333333222 222 23567778
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1231)
Q Consensus 349 ~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1231)
++..+-..++.+.- .++.+.+++..|++- ...+.|++. .+..+..+.++++.++++|...--+..+++++.+
T Consensus 76 Iy~~la~~vi~~qr------~~~~~~S~i~ARv~l-sRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l 148 (237)
T PF13748_consen 76 IYAELAVPVILSQR------QQGLSVSTIAARVAL-SREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLIL 148 (237)
T ss_pred HHHHHhHHHHHHHH------HhCCChhHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777665542 234566777777742 223334433 3556677888888888877655444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 428 LICGLLNVPFAKILQKCQSEFMIAQDERLR 457 (1231)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~ 457 (1231)
+++..+...+.++..+...+.+...+++++
T Consensus 149 ~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~ 178 (237)
T PF13748_consen 149 ALFLLILPRFARRNYRLYRRLNNRLEKEVD 178 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHcc
Confidence 444444455665555555544444444433
No 498
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.04 E-value=6.2e-06 Score=88.12 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=41.7
Q ss_pred ceeeEEEEeeCCeEEEEECcCCCChHHHHHHHhCCCcCCCcEEEEcC
Q 000905 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1231)
Q Consensus 612 ~L~~inl~i~~Ge~vaIvG~sGSGKSTLl~~Llg~~~~~~G~I~v~g 658 (1231)
..+-+.+.+++|+.++|+||+||||||++++|+|++++.+|.|.+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 34445677899999999999999999999999999999999998865
No 499
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.03 E-value=0.019 Score=68.04 Aligned_cols=216 Identities=10% Similarity=0.045 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 340 FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGL 418 (1231)
Q Consensus 340 ~~~~~~~~~~r~~L~~~i~~K~l~l~~~~~~~~~~G~iinl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~~L~~~lg~ 418 (1231)
+...++..+.|..|.....++=+++.. . +. -=.|++.|++++.+... ....+...++.++.-+.+||.+-|.
T Consensus 160 ~~~~~l~irWR~wLT~~yl~~Wl~~r~--i-en----PDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~ 232 (409)
T PRK11098 160 FFVSHYVFRWRTAMNEYYMAHWQKLRH--I-EG----AAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAH 232 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--C-CC----ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345678899999999998887776541 1 11 34678888888766432 2344555555555555566654332
Q ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHhchH-HHHHHHHH
Q 000905 419 G-------------ALPGLVLFLICGLLNVPFAKILQKCQ-SEFMIAQDERLRSTSEILNNMKIIKLQSWE-EKFKSLIE 483 (1231)
Q Consensus 419 ~-------------~l~gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~r~~~~~E~L~gir~IK~~~~E-~~f~~~i~ 483 (1231)
. ..+.++..++...+...+++++.+.. +++....|=|-+++. .=++-+ +.| +...++..
T Consensus 233 l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVr-vrenaE-----~~E~~~L~~~F~ 306 (409)
T PRK11098 233 VPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVY-GEDDAD-----RATPPTVRELFS 306 (409)
T ss_pred cccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhH-hhhhhh-----HHHHHHHHHHHH
Confidence 1 11111111222222333444333322 222233344443321 000000 112 12333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000905 484 SRREKEFKWLSEAQLRKAYGTVI---YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMI 560 (1231)
Q Consensus 484 ~~r~~e~~~l~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~l~~~~~lt~~~~f~~l~~~~~l~~pl~~l~~~i~~~~ 560 (1231)
+.++.-.+..........+.... ....|.++. +- .++ .+++|.|.+..+...|+.+...+..+.+.+..+.
T Consensus 307 ~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~----aP-~y~-aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~la 380 (409)
T PRK11098 307 NVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLL----FP-SIV-AGTITLGLMTQITNVFGQVRGSFQYLINSWTTIV 380 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHH-cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222222222222222211 112232221 11 122 3689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 000905 561 QVKVSFDRINAFLL 574 (1231)
Q Consensus 561 ~a~vs~~Ri~~fl~ 574 (1231)
+-+...+|+.+|.+
T Consensus 381 el~A~~~RL~~F~~ 394 (409)
T PRK11098 381 ELLSIYKRLRSFEA 394 (409)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999975
No 500
>PRK14079 recF recombination protein F; Provisional
Probab=98.01 E-value=1e-05 Score=94.88 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=59.6
Q ss_pred CcCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhccCeE
Q 000905 718 LNLSGGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788 (1231)
Q Consensus 718 ~~LSGGQkQRIaLARAly---------~~~~IllLDep~SalD~~t~~~i~~~~i~~~l~~kTvIlvTH~l~~l~~aD~I 788 (1231)
.-+|+||++++++|+.+. .+|+++|||||+|.||.+..+.+.+ .+... ..+ +|| ..+.-+-+|++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~-~l~~~--~q~--~it-~t~~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLA-LAASL--PQA--IVA-GTEAPPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHH-HHhcC--CcE--EEE-cCCCCCCCceE
Confidence 357999999999999998 8999999999999999998887753 34222 233 444 22445668999
Q ss_pred EEEeCCeEeEec
Q 000905 789 LVLEGGQITQSG 800 (1231)
Q Consensus 789 ivl~~G~I~~~G 800 (1231)
+.+++|++....
T Consensus 336 ~~~~~~~~~~~~ 347 (349)
T PRK14079 336 LRIEAGVFTPEA 347 (349)
T ss_pred EEEeccEecCCC
Confidence 999999886544
Done!