Query 000905
Match_columns 1231
No_of_seqs 375 out of 3839
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 15:57:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000905.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_675-679//hhsearch_pdb/000905hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1115.2 85.5 1001 217-1227 1-1088(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 867.5 82.6 936 276-1227 47-1042(1284)
3 4f4c_A Multidrug resistance pr 1.0 1 1 676.8 57.9 537 283-820 758-1317(1321)
4 4a82_A Cystic fibrosis transme 1.0 1 1 653.3 64.0 546 270-818 7-575 (578)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 644.8 61.3 544 272-820 32-591 (598)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 643.9 69.4 546 269-820 15-579 (587)
7 3b60_A Lipid A export ATP-bind 1.0 1 1 616.8 71.8 541 271-819 19-579 (582)
8 2yl4_A ATP-binding cassette SU 1.0 1 1 615.2 68.8 545 271-819 13-583 (595)
9 3b5x_A Lipid A export ATP-bind 1.0 1 1 614.9 74.6 542 270-819 18-579 (582)
10 3g5u_A MCG1178, multidrug resi 1.0 1 1 573.8 56.6 545 275-820 703-1271(1284)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1115.15 Aligned_cols=1001 Identities=18% Similarity=0.193 Sum_probs=709.7
Q ss_pred HHHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---------CCCCCCCHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 998142-699888999999944827899999999999998731---------2799982189999999-77979999999
Q 000905 217 LLSLGY-SKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVREN---------NSNNNGNLVRKVITNV-YLKENIFIAIC 285 (1231)
Q Consensus 217 l~~~g~-~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~---------~~~~~~~~l~~~l~~~-~~~~~~~~~~~ 285 (1231)
|++.|. |++|+..|.+.+.++|..+...+.+++.|.+..++. +++..++.-++.+||. -+++.++..+.
T Consensus 1 ~~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Lfrya~~~d~~l~~~g 80 (1321)
T 4f4c_A 1 MLRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVSIPQLYRYTTTLEKLLLFIG 80 (1321)
T ss_dssp ---CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCCHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHH
T ss_conf 98773100687635445679501110000113454243554334310012232025687799997315676789999999
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHCCC---------------CCC----CHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999---99999985027---------------973----37899----9999999999999999999999
Q 000905 286 ALLRTIAVVVGPL---LLYAFVNYSNR---------------GEE----NLQEG----LSIVGCLIITKVVESFTQRHCF 339 (1231)
Q Consensus 286 ~l~~~~~~~~~P~---ll~~li~~~~~---------------~~~----~~~~g----~~~~~~l~~~~~~~~~~~~~~~ 339 (1231)
.+...+.+...|+ ++..+++.+.+ ... ..... ..+.++++++..+..+.. .
T Consensus 81 ~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~---~ 157 (1321)
T 4f4c_A 81 TLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQIT---V 157 (1321)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_conf 9999999999999999999999999701000145430003443100168999999999999999999999999999---9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999987499345788998899999998999993167-89889999999999999999999978
Q 000905 340 FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGL 418 (1231)
Q Consensus 340 ~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~iinlms~D~~~i~~~~-~~~~~~~~~pl~i~~~~~~L~~~lG~ 418 (1231)
+....++.|+...++..+|+|.++++....+++++|+++|++++|+++++++. ..+..++..++.++.++++++..-+.
T Consensus 158 ~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~ 237 (1321)
T 4f4c_A 158 TCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQ 237 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999997889899879984899999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999999999999999920999998525999999999999999999999999
Q 000905 419 GALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL 498 (1231)
Q Consensus 419 ~~l~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~ 498 (1231)
.+++.++++.+..++...+.+++.+..++.++..+++.+.++|.++|||+||+|+||+.+.++..+..++..+...+...
T Consensus 238 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 317 (1321)
T 4f4c_A 238 LTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGL 317 (1321)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999983999998214299999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999-98999999999999998837987768899999999999999999999999999999999999999843457
Q 000905 499 RKAYGTVI-YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1231)
Q Consensus 499 ~~~~~~~~-~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e 577 (1231)
........ .........++.+.+..++.++.++++.+|+++.++..+..|+..++..+..+.++.+|.+|+.++++.++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 397 (1321)
T 4f4c_A 318 FLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKP 397 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999999599869999999999999999999899999999999999999999971785
Q ss_pred C-CCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 8-970000002358998489983268617999877103488885088099997768889588999982987588858998
Q 000905 578 L-NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL 656 (1231)
Q Consensus 578 ~-~~~~~~~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~V~v 656 (1231)
. ++.........+..+.|+++|++|+|+..++.|+|+|+||++++|++++||||+|||||||+++|+|++++.+|+|.+
T Consensus 398 ~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~i 477 (1321)
T 4f4c_A 398 VIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITI 477 (1321)
T ss_dssp CSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 34566655656778887679998554079999874333318862288278998058985778888754565164486157
Q ss_pred CC-------------EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 49-------------1999807886898898899713999-999999999998144588811889996302678876890
Q 000905 657 YG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1231)
Q Consensus 657 ~g-------------~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSG 722 (1231)
+| +|+||+|+||+||+||||||+||+| .+++++.++++.|++++|++.||+||+|+|||+|.+|||
T Consensus 478 dG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSG 557 (1321)
T 4f4c_A 478 DGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSG 557 (1321)
T ss_dssp TTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCH
T ss_pred CCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCEECCCCCCCCH
T ss_conf 99650112599985046665875332078616788641552209999999987565468870888886075589887777
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCH
Q ss_conf 79999999999823998999807788889998999999999782399689998269431201486999929838570486
Q 000905 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1231)
Q Consensus 723 GQKqRIsLARAly~~adI~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G~~ 802 (1231)
||||||+||||+|+||+||||||||||||+++++. +++++.+.+++||+|+|||++++++.||+|++|++|+|+|+|+|
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~-i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth 636 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGI-VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDH 636 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHH-HHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEECCEEECCCCH
T ss_conf 78799999998725999899845544688789999-99999998479889997363878986898999639965136899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCC----CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC-CCCCC-----CCC-----CCC
Q ss_conf 89986171699999984421016----999988899-985211125678999999988-88778-----744-----211
Q 000905 803 QELLLAGTAFEQLVNAHRDAITG----LGPLDNAGQ-GGAEKVEKGRTARPEEPNGIY-PRKES-----SEG-----EIS 866 (1231)
Q Consensus 803 ~eL~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~-----~~~ 866 (1231)
+||+++++.|+++++.+...... .+....+.. ...............+.++.. ..+.. ... +..
T Consensus 637 ~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1321)
T 4f4c_A 637 RALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEE 716 (1321)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCC--------------------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 99998532799999962212222332334433223211122222342222222110221110132124567740257775
Q ss_pred C--CCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCC---CCCHHH
Q ss_conf 1--12465653787641798708899999960623699999999999999989778999865----03888---783179
Q 000905 867 V--KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYA----IQIPK---ITSGIL 937 (1231)
Q Consensus 867 ~--~~~~~l~~~E~~~~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w----~~~~~---~~~~~~ 937 (1231)
. +......++|.++.|..++.+|+.|......++..++.+++..+.........+|++.| ...+. ....+|
T Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1321)
T 4f4c_A 717 RIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFW 796 (1321)
T ss_dssp CCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHH
T ss_pred HCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 31540389999999970786310999999987789999999999999999999999999999987517934556678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 999999999999999999999999999999999999999874496411003--684301552127521133772899999
Q 000905 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1231)
Q Consensus 938 l~vY~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~vlrapmsFFd~--tP~GrIlNRfS~Di~~iD~~lp~~l~~ 1015 (1231)
..+|.+++++..++.+++.+++...+.++++++|++++++++++||+|||+ ||+|||+|||++|++.+|..++..+..
T Consensus 797 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~ 876 (1321)
T 4f4c_A 797 ALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFST 876 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998887349933321678884888850250599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCH
Q ss_conf 999999999888888865579999999999999999999886--568899774016534999899965493003235618
Q 000905 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIA--TARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV 1093 (1231)
Q Consensus 1016 ~~~~~~~~l~~i~vi~~~~p~~~~~~ipl~~~~~~~~~~Y~~--tsRelkRL~s~srSPi~shf~Etl~Gl~tIRAf~~~ 1093 (1231)
++...+.+++.++++.+..|++.+++++++.++.+...++.+ ..++.++.+..++ ..+++.|+++|+.|||||++|
T Consensus 877 ~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~l~gi~tIra~~~e 954 (1321)
T 4f4c_A 877 VITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFAD--SGKIAIEAIENVRTVQALARE 954 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHH--HHHHHHHHHHTHHHHHHTTTH
T ss_pred HHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCH
T ss_conf 999865377770221378689999999988899999999999999999999999888--988999999627988861414
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 89999999975432304999999969999999888899---99999999988258876734799999999999-999999
Q 000905 1094 DRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNL---TLFTAALFLVLIPRGYVAPGLVGLSLSYAFTL-TGTQVF 1169 (1231)
Q Consensus 1094 ~~f~~~~~~~iD~~~~~~~~~~~~~rWl~~Rl~~ig~~---~~~~~a~~~v~~~~~~~~~g~vGlalsyal~~-~~~l~~ 1169 (1231)
++|.+++.+.+|.+.+..+.....+.|.......+..+ .++..+...+......++++.+ +++.+++.+ ...+.+
T Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 1033 (1321)
T 4f4c_A 955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRV-LRVMYAITISTSTLGF 1033 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHH-HHHHHHHHTTTSSTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 889999999999999999999999999999999999999999998757887537654214789-9999999877889999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC
Q ss_conf 9999999830102599998610599999987889999999999884999958998369
Q 000905 1170 LSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1170 ~vr~~~~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~nv~~rYr~ 1227 (1231)
+.+.+.+++..+.|+||+.+|.+.++|.+ +...+++.||..|+|+|+||+++|+.
T Consensus 1034 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~---~~~~~~~~~~~~g~I~f~nVsf~Y~~ 1088 (1321)
T 4f4c_A 1034 ATSYFPEYAKATFAGGIIFGMLRKISKID---SLSLAGEKKKLYGKVIFKNVRFAYPE 1088 (1321)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHCCCSSC---TTCCCSBCCCCCCCEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCEEEEEEEEEECCC
T ss_conf 99999999999999998999860766577---76677878888881899987985799
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=867.46 Aligned_cols=936 Identities=16% Similarity=0.155 Sum_probs=636.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------C---------CH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 797999999999999999999999999998502797---------3---------37-8999999999999999999999
Q 000905 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGE---------E---------NL-QEGLSIVGCLIITKVVESFTQR 336 (1231)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~---------~---------~~-~~g~~~~~~l~~~~~~~~~~~~ 336 (1231)
+..+++..++.++..+.....|+++..+++...... . .. .....++..++...++..++..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1284)
T 3g5u_A 47 RLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAY 126 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999998613444332222221111100244688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999874993457889988999999989999931678-9889999999999999999999
Q 000905 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGV 415 (1231)
Q Consensus 337 ~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~iinlms~D~~~i~~~~~-~~~~~~~~pl~i~~~~~~L~~~ 415 (1231)
...+...+.+.++...++..+|+|.++++....+++++|+++|+++.|++.+++... .+..+....+.++.++++++..
T Consensus 127 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 206 (1284)
T 3g5u_A 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTR 206 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998699899756887789999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97889999999999999999999999999999999999999999999920999998525999999999999999999999
Q 000905 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE 495 (1231)
Q Consensus 416 lG~~~l~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~ 495 (1231)
-...+++.++++.++..+...+.+...+..++.++..++......|.++||++||.|++|+.+.++..+..++-.+...+
T Consensus 207 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~ 286 (1284)
T 3g5u_A 207 GWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIK 286 (1284)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999999999978799998465399999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999-9998999999999999998837987768899999999999999999999999999999999999999843
Q 000905 496 AQLRKAYGT-VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1231)
Q Consensus 496 ~~~~~~~~~-~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~ 574 (1231)
......... ...........++.+.+..++..+.++++.+++++........|+..+...+..+.++..+.+|+.++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 366 (1284)
T 3g5u_A 287 KAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIID 366 (1284)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999999299889999999999999999999999999999999999999999972
Q ss_pred CCCC-CCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 4578-970000002358998489983268617999877103488885088099997768889588999982987588858
Q 000905 575 DHEL-NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1231)
Q Consensus 575 ~~e~-~~~~~~~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~ 653 (1231)
.++. ++.......++...+.|+++|++|+|+.+++.++|+|+||++++|+.++|+||+|||||||+++|+|++++.+|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~ 446 (1284)
T 3g5u_A 367 NKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446 (1284)
T ss_dssp CCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEE
T ss_conf 89867766656777777777189999899769999871012545897599889998999997999999980788999738
Q ss_pred EEECC-------------EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99849-------------1999807886898898899713999-999999999998144588811889996302678876
Q 000905 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1231)
Q Consensus 654 V~v~g-------------~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~n 719 (1231)
|.++| .++||+|+||+|++||+|||.||.+ .++++++++++.|+++++++.+|+|++|.+||+|.+
T Consensus 447 i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 526 (1284)
T 3g5u_A 447 VSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ 526 (1284)
T ss_dssp EEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCS
T ss_pred EEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999987757999998654898688753776699997457989999999999998296999974656334501478786
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEE
Q ss_conf 89079999999999823998999807788889998999999999782399689998269431201486999929838570
Q 000905 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1231)
Q Consensus 720 LSGGQKqRIsLARAly~~adI~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~ 799 (1231)
|||||||||+||||+|++|+|++|||||||||+++++.+. +++....+++|+|+|||+++.+..||+|++|++|+|+++
T Consensus 527 LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~ 605 (1284)
T 3g5u_A 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQ-AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHH-HHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEE
T ss_conf 5999999999999995299989997987777999999999-999997399989999407789974998999989999997
Q ss_pred CCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHH
Q ss_conf 48689986171699999984421016999988899985211125678999999988887787442--1111246565378
Q 000905 800 GNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGE--ISVKGLTQLTEDE 877 (1231)
Q Consensus 800 G~~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~E 877 (1231)
|+|+|++++++.|.++...+.......... ......++.. ...................... .......+..++|
T Consensus 606 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1284)
T 3g5u_A 606 GNHDELMREKGIYFKLVMTQTAGNEIELGN--EACKSKDEID-NLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKE 682 (1284)
T ss_dssp ECHHHHHHTTSHHHHHHHHTC-----------------------------------------------------------
T ss_pred CCHHHHHHCCCHHHHHHHHHHHCCCCCCCC--CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 889999867877999999743002211133--3333222223-4433333333200034543334456422332110245
Q ss_pred HHH--CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCC-----CCCHHHHHHHHHHHH
Q ss_conf 764--179870889999996062369999999999999998977----899986503888-----783179999999999
Q 000905 878 EME--IGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAA----TYWLAYAIQIPK-----ITSGILIGVYAGVST 946 (1231)
Q Consensus 878 ~~~--~G~V~~~vy~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~wl~~w~~~~~-----~~~~~~l~vY~~l~~ 946 (1231)
+.+ ....++..++.|.+.. +..+++.+++.++..+..... ..|+..|.+... .....+..+|.++++
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i 760 (1284)
T 3g5u_A 683 ALDEDVPPASFWRILKLNSTE--WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGI 760 (1284)
T ss_dssp -CCCCCSCCCTTHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 553136625899999984515--799999999999999999999999999999985568503367799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999987449641100--3684301552127521133772899999999999999
Q 000905 947 ASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD--STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELL 1024 (1231)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~vlrapmsFFd--~tP~GrIlNRfS~Di~~iD~~lp~~l~~~~~~~~~~l 1024 (1231)
...++.+++.+.+...+.+.++++|.+++++++++|++||| .+|+|+|+|||++|++.+|..++..+..++...+.++
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~ 840 (1284)
T 3g5u_A 761 ISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLG 840 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999839988875789988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCHHHHHHH
Q ss_conf 888888865579---9999999999999999998865--68899774016534999899965493003235618899999
Q 000905 1025 AIIGIMTFVTWQ---VLVVAIFAMVAVRFVQRYYIAT--ARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1231)
Q Consensus 1025 ~~i~vi~~~~p~---~~~~~ipl~~~~~~~~~~Y~~t--sRelkRL~s~srSPi~shf~Etl~Gl~tIRAf~~~~~f~~~ 1099 (1231)
+.++++....|. ++++.+|+++++.+++..++.. .+..++++. ...++.|+++|+.|||+|++|++|.++
T Consensus 841 ~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~l~gi~ti~a~~~e~~~~~~ 915 (1284)
T 3g5u_A 841 TGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEG-----SGKIATEAIENFRTVVSLTREQKFETM 915 (1284)
T ss_dssp HHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTCTTTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 999999999699999999999999999999999999999999999999-----999999999889999984659999999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999754323049999999699999998888999999999998----8258876734799999999999999999999999
Q 000905 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1231)
Q Consensus 1100 ~~~~iD~~~~~~~~~~~~~rWl~~Rl~~ig~~~~~~~a~~~v----~~~~~~~~~g~vGlalsyal~~~~~l~~~vr~~~ 1175 (1231)
+.+..+...+... ...+|.++...+...+..+..++... +...+.++.+.+...+.+.......+..+...+.
T Consensus 916 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 992 (1284)
T 3g5u_A 916 YAQSLQIPYRNAM---KKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP 992 (1284)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999---9999999999999999999999999999999990980699999999999999999999999999
Q ss_pred HHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC
Q ss_conf 9830102599998610599999987889999999999884999958998369
Q 000905 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKVSLHM 1227 (1231)
Q Consensus 1176 ~lE~~m~SvERi~eY~~l~~E~~~~~~~~~pp~~WP~~G~I~f~nv~~rYr~ 1227 (1231)
++...+.+++|+.++.+.++|.+... ..+++.||.+|.|+|+|++++|..
T Consensus 993 ~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~ 1042 (1284)
T 3g5u_A 993 DYAKATVSASHIIRIIEKTPEIDSYS--TQGLKPNMLEGNVQFSGVVFNYPT 1042 (1284)
T ss_dssp CSTHHHHHHHHHHHHHHSCCSSSSCC--SSCCCTTTTSCCEEEEEEEBCCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCCCEEEEEEEEECCC
T ss_conf 99999999999999983887666655--566545677785799998997799
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=676.76 Aligned_cols=537 Identities=18% Similarity=0.202 Sum_probs=391.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999985027-9733789999999999999999999999999999999999999999999998
Q 000905 283 AICALLRTIAVVVGPLLLYAFVNYSNR-GEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1231)
Q Consensus 283 ~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~ 361 (1231)
.++..+........++++..+++.... +......+..|+..+++..++..++.....+...+.+.++...++..+|+|.
T Consensus 758 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~i 837 (1321)
T 4f4c_A 758 MSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNV 837 (1321)
T ss_dssp HHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999998751793455667899999999999999999999999999999999999999998887
Q ss_pred HCCCCCCCCC--CCHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7499345788--9988999999989999931678-988999999999999999999997889999999999999999999
Q 000905 362 LKLSSLGRKK--HSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFA 438 (1231)
Q Consensus 362 L~ls~~~~~~--~~~G~iinlms~D~~~i~~~~~-~~~~~~~~pl~i~~~~~~L~~~lG~~~l~g~~~~~i~~~l~~~~~ 438 (1231)
++.+....+. +++|+++|+++.|++.+.+... .+..+....+.++.++++++..-...+++.++++.+.........
T Consensus 838 l~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~ 917 (1321)
T 4f4c_A 838 LSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRG 917 (1321)
T ss_dssp HTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34993332167888488885025059999999999999999986537777022137868999999998889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 999999999999999999999999920999998525999999999999999999999999999999999-8999999999
Q 000905 439 KILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY-WMSPTIISSV 517 (1231)
Q Consensus 439 ~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~-~~~p~~v~~~ 517 (1231)
+...+.+.+..+...+......|.++|+++||.|++|+.+.++..+.-+...+...+............ ........++
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1321)
T 4f4c_A 918 RRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCA 997 (1321)
T ss_dssp SCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998889889999996279888614148899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCE
Q ss_conf 9999988379--87768899999999999999999999999999999999999999843457897000000235899848
Q 000905 518 IFLGCALTGS--APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595 (1231)
Q Consensus 518 ~f~~~~l~~~--~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i 595 (1231)
.+.+..++.. ..+.+..++..+..+.....|+..+......+.++..+.+|+.++++.++..++........+..+.|
T Consensus 998 ~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I 1077 (1321)
T 4f4c_A 998 YRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKV 1077 (1321)
T ss_dssp HHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCE
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf 98757887537654214789999999987788999999999999999999998999860766577766778788888818
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EEEE
Q ss_conf 998326861799987710348888508809999776888958899998298758885899849-------------1999
Q 000905 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1231)
Q Consensus 596 ~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~V~v~g-------------~iay 662 (1231)
+|+|++|+|+.+++.|+|+|+||+|++||+++|||++|||||||+++|+|.++|.+|+|.++| +++|
T Consensus 1078 ~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~ 1157 (1321)
T 4f4c_A 1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157 (1321)
T ss_dssp EEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEE
T ss_pred EEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEE
T ss_conf 99987985799998821245169988989999989999819999999956863899789999998654999999854599
Q ss_pred EECCCCCCCCCHHHHHHCCC---CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 80788689889889971399---999999999999814458881188999630267887689079999999999823998
Q 000905 663 VSQTSWIQSGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1231)
Q Consensus 663 v~Q~pwi~n~TIreNIlfg~---~~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQKqRIsLARAly~~ad 739 (1231)
|||+|++|+|||||||.||. .+++++.+++++.|+++++++.||+|++|.|||+|.||||||||||+||||++++|+
T Consensus 1158 V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ 1237 (1321)
T 4f4c_A 1158 VSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPK 1237 (1321)
T ss_dssp ECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCS
T ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 87899732723999974549999999999999999829849997176789998238891569999999999999971799
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
Q ss_conf 99980778888999899999999978239968999826943120148699992983857048689986171699999984
Q 000905 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1231)
Q Consensus 740 I~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G~~~eL~~~~~~~~~l~~~~ 819 (1231)
|++|||||||||+++++.|. +.+....++||+|.||||++.+.+||+|+||++|+|+|+|+|+||++++|.|+++++.+
T Consensus 1238 ILiLDEaTSaLD~~tE~~Iq-~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q 1316 (1321)
T 4f4c_A 1238 ILLLDEATSALDTESEKVVQ-EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQ 1316 (1321)
T ss_dssp EEEEESCCCSTTSHHHHHHH-HHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC----------
T ss_pred EEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
T ss_conf 89996811157899999999-99999739998999606899999699999998989999888899984980999999999
Q ss_pred H
Q ss_conf 4
Q 000905 820 R 820 (1231)
Q Consensus 820 ~ 820 (1231)
.
T Consensus 1317 ~ 1317 (1321)
T 4f4c_A 1317 M 1317 (1321)
T ss_dssp -
T ss_pred H
T ss_conf 8
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=653.28 Aligned_cols=546 Identities=21% Similarity=0.273 Sum_probs=444.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-C-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999977979999999999999999999999999985027973-3-78----9999999999999999999999999999
Q 000905 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-N-LQ----EGLSIVGCLIITKVVESFTQRHCFFGSR 343 (1231)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~-~~----~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 343 (1231)
...+.+++.++...++.++..++..+.|++++.+++....... . .. ..+.+++++++..++..++.....+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (578)
T 4a82_A 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (578)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99889999999999999999999999999999999999816871146778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999874993457889988999999989999931678-98899999999999999999999788999
Q 000905 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1231)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~iinlms~D~~~i~~~~~-~~~~~~~~pl~i~~~~~~L~~~lG~~~l~ 422 (1231)
+.+.++...++..+|+|.++++....++.++|+++|++++|++++.++.. .+..+|..++.+++++++++...++.+++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 166 (578)
T 4a82_A 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999987899997689869999999999999999999999999999999999999999996999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999209999985259999999999999999999999999999
Q 000905 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1231)
Q Consensus 423 g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1231)
.++++.+...+...+.++..+..++.++..+++.+.+.|.++|+++||.|+||+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (578)
T 4a82_A 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (578)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999998249999981664999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999998999-999999-999998837987768899999999999999999999999999999999999999843457897
Q 000905 503 GTVIYWMSP-TIISSV-IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1231)
Q Consensus 503 ~~~~~~~~p-~~v~~~-~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~ 580 (1231)
......... .....+ .++++.... +.++++.+++++.++..+..|+..++..+..+.++.+|.+|+.++++.++..+
T Consensus 247 ~~~~~~~~~~~~~~~v~~~g~~~v~~-g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 247 SFAAINTVTDIGPIIVIGVGAYLAIS-GSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999985-99589999999999999999999999999999999999999999976897666
Q ss_pred CHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--
Q ss_conf 000000235899848998326861799987710348888508809999776888958899998298758885899849--
Q 000905 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1231)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~V~v~g-- 658 (1231)
+.....+.+...+.++++|++|+|+.+ +.++|+|+||++++||.++|+||+|||||||+++|+|+++|.+|+|.++|
T Consensus 326 ~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 404 (578)
T 4a82_A 326 NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404 (578)
T ss_dssp CCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCC-CCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEE
T ss_conf 787766667778807999999975899-9741343379987999999989999859999999846788999679999998
Q ss_pred -----------EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf -----------1999807886898898899713999-9999999999981445888118899963026788768907999
Q 000905 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1231)
Q Consensus 659 -----------~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQKq 726 (1231)
+++||+|+||++++||+|||.||.+ .++++..++++.+++.++++.+|+|++|.+||+|.+|||||||
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred HHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCHHHHH
T ss_conf 44278999960068992898347645999985279998899999999880959999757330102530688967999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999998239989998077888899989999999997823996899982694312014869999298385704868998
Q 000905 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1231)
Q Consensus 727 RIsLARAly~~adI~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G~~~eL~ 806 (1231)
|++||||++++|++++||||+|++|+++++.+. +++....+++|+|++||+++.+..||+|++|++|+|++.|+|+|++
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHH
T ss_conf 999999997499999997865457999999999-9999980899799983178999719989999899899988899998
Q ss_pred HCCCHHHHHHHH
Q ss_conf 617169999998
Q 000905 807 LAGTAFEQLVNA 818 (1231)
Q Consensus 807 ~~~~~~~~l~~~ 818 (1231)
++++.|+++.+.
T Consensus 564 ~~~~~~~~~~~~ 575 (578)
T 4a82_A 564 AKQGAYEHLYSI 575 (578)
T ss_dssp HTTSHHHHHHTT
T ss_pred HCCCHHHHHHHH
T ss_conf 588389999985
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=644.83 Aligned_cols=544 Identities=20% Similarity=0.209 Sum_probs=442.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99977979999999999999999999999999985027973378999999999999999999999999999999999999
Q 000905 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1231)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1231)
++.+++.++...++.++..++..+.|++++.+++....+.. ......++.++++..++..++.....+...+.+.++..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (598)
T 3qf4_B 32 LRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR-FDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVF 110 (598)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999973688-89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999874993457889988999999989999931678-9889999999999999999999978899999999999
Q 000905 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1231)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~iinlms~D~~~i~~~~~-~~~~~~~~pl~i~~~~~~L~~~lG~~~l~g~~~~~i~ 430 (1231)
.++..+|+|.++++....++.++|+++|++++|++++.+... .+..++..++.++.++++++..-++.+++.++++.+.
T Consensus 111 ~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~ 190 (598)
T 3qf4_B 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLT 190 (598)
T ss_dssp HHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999997799999768888999999999999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 9999999999999999999999999999999992099999852599999999999999999999999999999999-989
Q 000905 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI-YWM 509 (1231)
Q Consensus 431 ~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~-~~~ 509 (1231)
..+...+.++..+...+..+..+++.+.+.|.++|+++||.|+||+.+.++..+.+++..+...+........... ...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (598)
T 3qf4_B 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMV 270 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999737999997487099999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCC
Q ss_conf 99999999999998837987768899999999999999999999999999999999999999843457897000000235
Q 000905 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1231)
Q Consensus 510 ~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1231)
.......+.+.+..+...+.++++.+++.+.+...+..|+..++..+..+.++.++.+|+.++++.++..+.. ...+.+
T Consensus 271 ~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~ 349 (598)
T 3qf4_B 271 NNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELR 349 (598)
T ss_dssp HHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCC
T ss_conf 9999999999999999859978999999999999999999999999999999999999999997688777777-777777
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------
Q ss_conf 899848998326861799987710348888508809999776888958899998298758885899849-----------
Q 000905 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1231)
Q Consensus 590 ~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~V~v~g----------- 658 (1231)
...+.++++|++|+|++ +.++|+|+|+++++|+.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 350 ~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 350 EVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp SCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCEEEEEEEEEECCC--CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHH
T ss_conf 77771899998997799--9860122279986998899989999969999999945857998089999998301889999
Q ss_pred --EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --1999807886898898899713999-9999999999981445888118899963026788768907999999999982
Q 000905 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1231)
Q Consensus 659 --~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQKqRIsLARAly 735 (1231)
.++||+|+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++||||++
T Consensus 428 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 84108990798232463999974479999999999999996978889746453236422788987999999999999996
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
Q ss_conf 39989998077888899989999999997823996899982694312014869999298385704868998617169999
Q 000905 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1231)
Q Consensus 736 ~~adI~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G~~~eL~~~~~~~~~l 815 (1231)
++|+|++||||+|+||+++++.+. +++....+++|+|+|||+++.+..||+|++|++|+|++.|+|+|++++++.|.++
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 586 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQ-AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHH-HHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 499999998976679999999999-9999980899899994277899719989999899999877899998678779999
Q ss_pred HHHHH
Q ss_conf 99844
Q 000905 816 VNAHR 820 (1231)
Q Consensus 816 ~~~~~ 820 (1231)
+..+.
T Consensus 587 ~~~~~ 591 (598)
T 3qf4_B 587 FTSQY 591 (598)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99976
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=643.94 Aligned_cols=546 Identities=19% Similarity=0.243 Sum_probs=427.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999977979999999999999999999999999985027973378999999999999999999999999999999999
Q 000905 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1231)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1231)
+..++.+++.+++..++.++..++..+.|+++..+++...... .....+.++..+++..++..+......+...+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (587)
T 3qf4_A 15 ARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG-DFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQN 93 (587)
T ss_dssp GGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999987369-879999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998749934578899889999999899999316789-889999999999999999999978899999999
Q 000905 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1231)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~~~~~~~~G~iinlms~D~~~i~~~~~~-~~~~~~~pl~i~~~~~~L~~~lG~~~l~g~~~~ 427 (1231)
+...++..+|+|.++++....++.++|+++|++++|++++.++... +..++..++.++.++++++..-+..+++.++++
T Consensus 94 ~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~ 173 (587)
T 3qf4_A 94 FGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLI 173 (587)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999997889799765888999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999992099999852599999999999----999999999999999999
Q 000905 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQLRKAYG 503 (1231)
Q Consensus 428 ~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~----R~~El~~l~~~~~~~~~~ 503 (1231)
.+...+...+.++..+..++.++..+++.+.+.|.++|+++||.|+||+.+.++..+. ++.+.+..+........
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (587)
T 3qf4_A 174 PPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL- 252 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999999999999999999999999999999985599999862149999999999999999999999999999999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99998999999999999998837987768899999999999999999999999999999999999999843457897000
Q 000905 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1231)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1231)
...........+.+.+..++..+.++++.+++.+.++..+..|+..++..+..+.++.+|.+|+.++++.++..++..
T Consensus 253 --~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 330 (587)
T 3qf4_A 253 --FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD 330 (587)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf --999999999999999999998499389999999999999999999999999999999999999999976897657887
Q ss_pred HHCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----
Q ss_conf 000235899848998326861799987710348888508809999776888958899998298758885899849-----
Q 000905 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1231)
Q Consensus 584 ~~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~V~v~g----- 658 (1231)
.....+...+.++++|++|+|+.+ ++++|+|+||++++||.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 331 ~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 331 NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409 (587)
T ss_dssp TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred CCCCCCCCCCCEEEEEEEEECCCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 765668888807997889984899-9764211179986998899989999979999999927866998679899998340
Q ss_pred --------EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --------1999807886898898899713999-9999999999981445888118899963026788768907999999
Q 000905 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 --------~iayv~Q~pwi~n~TIreNIlfg~~-~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQKqRIs 729 (1231)
+++||+|+|++|++||+|||.+|.+ .+++++.++++.|++.++++.+|+|++|.+||+|.+||||||||++
T Consensus 410 ~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp BCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred CCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 78999984138977898676755999985248899999999999996849999756531212751898992999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99998239989998077888899989999999997823996899982694312014869999298385704868998617
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 730 LARAly~~adI~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G~~~eL~~~~ 809 (1231)
||||++++|+|++||||||+||+++++++.+ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+|+|+++++
T Consensus 490 lARal~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~ 568 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTSSVDPITEKRILD-GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHC 568 (587)
T ss_dssp HHHHHHTCCSEEEEESCCTTSCHHHHHHHHH-HHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHC
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 9999972999999979754479999999999-999867999899982276889819989999899899978899998678
Q ss_pred CHHHHHHHHHH
Q ss_conf 16999999844
Q 000905 810 TAFEQLVNAHR 820 (1231)
Q Consensus 810 ~~~~~l~~~~~ 820 (1231)
+.|.++.+.+.
T Consensus 569 ~~~~~~~~~~~ 579 (587)
T 3qf4_A 569 KPYREIYESQF 579 (587)
T ss_dssp HHHHHHHHHHC
T ss_pred CHHHHHHHHHH
T ss_conf 39999999984
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=616.81 Aligned_cols=541 Identities=18% Similarity=0.236 Sum_probs=432.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997797999999999999999999999999998502797337899999999999999999999999999999999999
Q 000905 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1231)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir 350 (1231)
..+.+++.++...++.++..++..+.|+++..+++...... .....+.++.++++..++..++.....+...+.+.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (582)
T 3b60_A 19 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 97 (582)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999884368-65799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998749934578899889999999899999316-78988999999999999999999997889999999999
Q 000905 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF-PFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1231)
Q Consensus 351 ~~l~~~iy~K~L~ls~~~~~~~~~G~iinlms~D~~~i~~~-~~~~~~~~~~pl~i~~~~~~L~~~lG~~~l~g~~~~~i 429 (1231)
..++..+|+|.++++....++.++|+++|+++.|++.+.+. ...+..++..++.+++++++++..-++.+++.++++.+
T Consensus 98 ~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l 177 (582)
T 3b60_A 98 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 177 (582)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999809999978898658999999879999999999999999999999999999999809999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999209999985259999999999----999999999999999999999
Q 000905 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES----RREKEFKWLSEAQLRKAYGTV 505 (1231)
Q Consensus 430 ~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~----~R~~El~~l~~~~~~~~~~~~ 505 (1231)
...+...+.++..+..++.++..+++.+.+.|.++|+++||.|++|+.+.++..+ .++.+.+..+..........+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T 3b60_A 178 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999996199999837689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99899999999999999883798776889999999999999999999999999999999999999984345789700000
Q 000905 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1231)
Q Consensus 506 ~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~ 585 (1231)
+... ....+.+.+..++..+.++++.+++.+.++..+..|+..++..+..+.++.++.+|+.++++.++..++. .
T Consensus 258 ~~~~---~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~ 332 (582)
T 3b60_A 258 IASL---ALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--K 332 (582)
T ss_dssp HHHH---HHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--C
T ss_pred HHHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--C
T ss_conf 9999---9999999999999849998999999999999999999999999999999999999999997599876677--7
Q ss_pred CCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------
Q ss_conf 0235899848998326861799987710348888508809999776888958899998298758885899849-------
Q 000905 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1231)
Q Consensus 586 ~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~V~v~g------- 658 (1231)
.+.+...+.++++|++|+|+.+ ++++|+|+|+++++||.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 333 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~ 411 (582)
T 3b60_A 333 RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 411 (582)
T ss_dssp BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC
T ss_pred CCCCCCCCCEEEEEEEEECCCC-CCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCC
T ss_conf 7777888847999889973999-974415615997699989998999998999999986106898976979999823069
Q ss_pred ------EEEEEECCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf ------199980788689889889971399--999999999999814458881188999630267887689079999999
Q 000905 659 ------SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 ------~iayv~Q~pwi~n~TIreNIlfg~--~~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQKqRIsL 730 (1231)
.++||+|+|+++++|++|||.+|. ..++++++++++.++++++++.+|+|++|.+||+|.+||||||||++|
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~i 491 (582)
T 3b60_A 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 491 (582)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred HHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999608088068747787899998545999989999999999849799998450411451147988789999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 99982399899980778888999899999999978239968999826943120148699992983857048689986171
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1231)
Q Consensus 731 ARAly~~adI~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G~~~eL~~~~~ 810 (1231)
|||++++|++++||||+|++|+++++.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+++|++++++
T Consensus 492 Aral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 570 (582)
T 3b60_A 492 ARALLRDSPILILDEATSALDTESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570 (582)
T ss_dssp HHHHHHCCSEEEEETTTSSCCHHHHHHHH-HHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 99997289989997865557989999999-99999967997999945477898599899997888988458999987698
Q ss_pred HHHHHHHHH
Q ss_conf 699999984
Q 000905 811 AFEQLVNAH 819 (1231)
Q Consensus 811 ~~~~l~~~~ 819 (1231)
.|+++.+.+
T Consensus 571 ~~~~~~~~q 579 (582)
T 3b60_A 571 VYAQLHKMQ 579 (582)
T ss_dssp SHHHHHHHT
T ss_pred HHHHHHHHH
T ss_conf 899999975
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=615.24 Aligned_cols=545 Identities=21% Similarity=0.230 Sum_probs=422.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999779799999999999999999999999999850279-7337-8999999999999999999999999999999999
Q 000905 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENL-QEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1231)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~-~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1231)
..+.+++.++...++.++..++..+.|+++..+++..... .... ...+.++..+++..++..++.....+...+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (595)
T 2yl4_A 13 LAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQR 92 (595)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98878999999999999999999999999999999997357402667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998749934578899889999999899999316-789889999999999999999999978899999999
Q 000905 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF-PFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1231)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~~~~~~~~G~iinlms~D~~~i~~~-~~~~~~~~~~pl~i~~~~~~L~~~lG~~~l~g~~~~ 427 (1231)
+...++..+|+|.++++....++.++|+++|+++.|++.+.+. ...+..++..++.+++++++++..-++.+++.++++
T Consensus 93 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 172 (595)
T 2yl4_A 93 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVV 172 (595)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998199999777984889999999999999999999999999999999999999998199999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999209999985259999999999----9999999999999999999
Q 000905 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES----RREKEFKWLSEAQLRKAYG 503 (1231)
Q Consensus 428 ~i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~----~R~~El~~l~~~~~~~~~~ 503 (1231)
.+...+...+.++..+..++..+..++..+.+.|.++|+++||.|++|+.+.++..+ .++.+.+..+.........
T Consensus 173 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (595)
T 2yl4_A 173 PPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT 252 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999811999998375699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99998999999999999998837987768899999999999999999999999999999999999999843457897000
Q 000905 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1231)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1231)
.++ .......+.+.+..++.++.++++..++.+.+...+..|+..++..+..+.++.++.+|+.++++.++..++..
T Consensus 253 ~~~---~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 329 (595)
T 2yl4_A 253 GLS---GNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNE 329 (595)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSC
T ss_pred HHH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999---99999999999999998699789999999999999999999999999999999999999999983897667777
Q ss_pred HHCCCCCCCCC-EEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----
Q ss_conf 00023589984-8998326861799987710348888508809999776888958899998298758885899849----
Q 000905 584 RRISLQKSDRS-VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1231)
Q Consensus 584 ~~~~~~~~~~~-i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~V~v~g---- 658 (1231)
...+.....+. ++++|++|+|+.+++.++|+|+||++++||.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 330 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 330 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 409 (595)
T ss_dssp SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHH
T ss_conf 87777678998389998899858998881201127998499889998999997999999982585789837999999811
Q ss_pred ---------EEEEEECCCCCCCCCHHHHHHCCCC----CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ---------1999807886898898899713999----999999999998144588811889996302678876890799
Q 000905 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1231)
Q Consensus 659 ---------~iayv~Q~pwi~n~TIreNIlfg~~----~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQK 725 (1231)
.++||+|+|+++++||+|||.||.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||||
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~ 489 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQK 489 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHH
T ss_pred HCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 17999997322898368832687799998405877665689999999998697999974732013501688786899999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999999823998999807788889998999999999782399689998269431201486999929838570486899
Q 000905 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1231)
Q Consensus 726 qRIsLARAly~~adI~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G~~~eL 805 (1231)
||++||||++++|++++||||+|+||+++++.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+++|+
T Consensus 490 qrv~iAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 568 (595)
T 2yl4_A 490 QRIAIARALLKNPKILLLDEATSALDAENEYLVQ-EALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEEL 568 (595)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHH-HHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC-
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHH
T ss_conf 9999999997599999998866689989999999-999999659979999468789975998999989989997889999
Q ss_pred HHC-CCHHHHHHHHH
Q ss_conf 861-71699999984
Q 000905 806 LLA-GTAFEQLVNAH 819 (1231)
Q Consensus 806 ~~~-~~~~~~l~~~~ 819 (1231)
+++ ++.|.++++.+
T Consensus 569 ~~~~~~~~~~~~~~q 583 (595)
T 2yl4_A 569 LSKPNGIYRKLMNKQ 583 (595)
T ss_dssp -----C---------
T ss_pred HHCCCHHHHHHHHHH
T ss_conf 747872999999974
No 9
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=614.85 Aligned_cols=542 Identities=18% Similarity=0.235 Sum_probs=432.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999779799999999999999999999999999850279733789999999999999999999999999999999999
Q 000905 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1231)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1231)
...+.+++.+++..++.++..++..+.|+++..+++...... .....+.++.++++..++..++.....+...+.+.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (582)
T 3b5x_A 18 TYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA-ESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998899999999999999999999999999999999986468-6679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998749934578899889999999899999316-7898899999999999999999999788999999999
Q 000905 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF-PFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1231)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~iinlms~D~~~i~~~-~~~~~~~~~~pl~i~~~~~~L~~~lG~~~l~g~~~~~ 428 (1231)
...++..+|+|.++++....++.++|+++|+++.|++.+.+. ...+..++..++.+++++++++..-++.+++.++++.
T Consensus 97 ~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~ 176 (582)
T 3b5x_A 97 VMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAP 176 (582)
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986999997789878999999988999999999999999999999999999999982999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999920999998525999999999----999999999999999999999
Q 000905 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE----SRREKEFKWLSEAQLRKAYGT 504 (1231)
Q Consensus 429 i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~----~~R~~El~~l~~~~~~~~~~~ 504 (1231)
+...+...+.++..+..++.++..++..+.+.|.++|+++||.|++|+.+.++.. +.++.+.+..+..........
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T 3b5x_A 177 VVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999519999970875999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 99989999999999999988379877688999999999999999999999999999999999999998434578970000
Q 000905 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1231)
Q Consensus 505 ~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~ 584 (1231)
++... ....+.+.+..++.++.++++.+++.+.++..+..|+..++..+..+.++.++.+|+.++++.++..++.
T Consensus 257 ~~~~~---~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-- 331 (582)
T 3b5x_A 257 MIASL---ALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG-- 331 (582)
T ss_pred HHHHH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_conf 99999---9999999999999859988999999999999999999999999999999999999999997589767777--
Q ss_pred HCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------
Q ss_conf 00235899848998326861799987710348888508809999776888958899998298758885899849------
Q 000905 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1231)
Q Consensus 585 ~~~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~V~v~g------ 658 (1231)
..+.+...+.++++|++|+|+.+ ++++|+|+|+++++||.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~ 410 (582)
T 3b5x_A 332 KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY 410 (582)
T ss_pred CCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHC
T ss_conf 77777788828999989972899-86540041699879998999899999799999999657789998798999985638
Q ss_pred -------EEEEEECCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -------199980788689889889971399--99999999999981445888118899963026788768907999999
Q 000905 659 -------SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1231)
Q Consensus 659 -------~iayv~Q~pwi~n~TIreNIlfg~--~~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQKqRIs 729 (1231)
.++||+|+|+++++|++|||.+|. ..++++++++++.++++++++.+|+|++|.+||+|.+||||||||++
T Consensus 411 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~ 490 (582)
T 3b5x_A 411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490 (582)
T ss_pred CHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHH
T ss_conf 89999648589827990531029999856688999999999999987989999847653345106888847999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99998239989998077888899989999999997823996899982694312014869999298385704868998617
Q 000905 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1231)
Q Consensus 730 LARAly~~adI~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G~~~eL~~~~ 809 (1231)
||||++++|++++||||+|++|+++++.+. +.+....+++|+|++||+++.+..||+|++|++|++++.|+++|+++.+
T Consensus 491 iAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 491 IARALLRDAPVLILDEATSALDTESERAIQ-AALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569 (582)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 999997499999997854468999999999-9999972899899993688999819989999899899977899998488
Q ss_pred CHHHHHHHHH
Q ss_conf 1699999984
Q 000905 810 TAFEQLVNAH 819 (1231)
Q Consensus 810 ~~~~~l~~~~ 819 (1231)
+.|.++.+.+
T Consensus 570 ~~~~~~~~~q 579 (582)
T 3b5x_A 570 GAYAQLHRIQ 579 (582)
T ss_pred CHHHHHHHHH
T ss_conf 5899999986
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=573.79 Aligned_cols=545 Identities=20% Similarity=0.224 Sum_probs=396.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77979999999999999999999999999985027973---378999999999999999999999999999999999999
Q 000905 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE---NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1231)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~---~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1231)
.++.+++..++.++...+....|+++..+++....... .......+...+++..++..+......+...+.+.++..
T Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~ 782 (1284)
T 3g5u_A 703 EWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTK 782 (1284)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57999999999999999999999999999999855685033677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998749934578--89988999999989999931678-98899999999999999999999788999999999
Q 000905 352 ALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1231)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~--~~~~G~iinlms~D~~~i~~~~~-~~~~~~~~pl~i~~~~~~L~~~lG~~~l~g~~~~~ 428 (1231)
.++..+|+|.++.+....+ ++++|+++|+++.|++.+.+... .+..+....+.++.++++++..-...+++.++++.
T Consensus 783 ~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p 862 (1284)
T 3g5u_A 783 RLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP 862 (1284)
T ss_dssp HHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998399888757899889999999999999999999999999999999999999999996999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 9999999999999999999999999999999999920999998525999999999999999999999999999999-999
Q 000905 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT-VIY 507 (1231)
Q Consensus 429 i~~~l~~~~~~~~~~~~~~~~~~~d~R~~~~~E~L~~ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~-~~~ 507 (1231)
+...+.....+...+...+..+..++..+...|.++|+++||.+++|+.+.++..+..+...+...+......... +..
T Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1284)
T 3g5u_A 863 IIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQ 942 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999889999984659999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHC
Q ss_conf 89999999999999988379877688999999999999999999999999999999999999998434578970-00000
Q 000905 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND-DVRRI 586 (1231)
Q Consensus 508 ~~~p~~v~~~~f~~~~l~~~~~Lt~~~~f~~l~l~~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~-~~~~~ 586 (1231)
.........+.+.+..++..+.++.+.++..+.++.....|+..+......+.++..+.+|+.++++.++..+. .....
T Consensus 943 ~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 1022 (1284)
T 3g5u_A 943 AMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGL 1022 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999999999999999990980699999999999999999999999999999999999999999838876666555665
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------
Q ss_conf 235899848998326861799987710348888508809999776888958899998298758885899849--------
Q 000905 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1231)
Q Consensus 587 ~~~~~~~~i~~~n~sf~w~~~~~~~~L~~inl~i~~G~lvaIvG~~GSGKSTLl~allGe~~~~~G~V~v~g-------- 658 (1231)
.+....+.++++|++|+|+..++.++|+|+||++++||.++|+|++|||||||+++|.|.+++.+|+|.++|
T Consensus 1023 ~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A 1023 KPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp CTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCH
T ss_pred CCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH
T ss_conf 45677785799998997799998700203059976998899988999978999999946867899779899998000789
Q ss_pred -----EEEEEECCCCCCCCCHHHHHHCCCC---CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -----1999807886898898899713999---99999999999814458881188999630267887689079999999
Q 000905 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1231)
Q Consensus 659 -----~iayv~Q~pwi~n~TIreNIlfg~~---~d~~~y~~vl~ac~L~~dl~~Lp~Gd~T~IGe~G~nLSGGQKqRIsL 730 (1231)
.++||||+|.++++||+|||.+|.+ .++++.+++++.+.+++.++.+|+|++|.+||+|.+|||||||||+|
T Consensus 1103 ~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~i 1182 (1284)
T 3g5u_A 1103 QWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182 (1284)
T ss_dssp HHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHH
T ss_pred HHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99970268987787406666999974668778999999999999839599997270424561178889338999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 99982399899980778888999899999999978239968999826943120148699992983857048689986171
Q 000905 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1231)
Q Consensus 731 ARAly~~adI~LLDDplSAlDa~~~~~If~~~i~~~l~~kTvIlvTH~l~~l~~aD~Iivl~~G~I~~~G~~~eL~~~~~ 810 (1231)
|||++++|+|++||||||+||.++++.|. +.+....+++|+|+|||+++.+..||+|++|++|+|++.|+|+|++++++
T Consensus 1183 ARal~~~p~iLiLDEpTs~lD~~~~~~i~-~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g 1261 (1284)
T 3g5u_A 1183 ARALVRQPHILLLDEATSALDTESEKVVQ-EALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG 1261 (1284)
T ss_dssp HHHHHHCCSSEEEESCSSSCCHHHHHHHH-HHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCS
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 99997499999986875557999999999-99998679998999955879998099899998998999778999984777
Q ss_pred HHHHHHHHHH
Q ss_conf 6999999844
Q 000905 811 AFEQLVNAHR 820 (1231)
Q Consensus 811 ~~~~l~~~~~ 820 (1231)
.|.++++.+.
T Consensus 1262 ~y~~l~~~q~ 1271 (1284)
T 3g5u_A 1262 IYFSMVSVQA 1271 (1284)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
T ss_conf 7999999976
Done!