BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000906
(1231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 155/277 (55%), Gaps = 16/277 (5%)
Query: 935 VSQESLEAAIRRVSRDSSLDPQKKSFIIQNLLMSRWITGQQMTHSKVT----ISSSGEEI 990
Q+S+ I + S L ++K+ ++Q +LMS ++ ++ TH K + +SSS E
Sbjct: 72 TQQDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYLKYRR-THKKESDENQLSSSDLE- 129
Query: 991 PGQQPSYRDTEKLIFGCKHYKRNCKLVATCCNSLYTCIRCHDEVADHALDRKSISEMMCM 1050
+Y D E+ I GC HY RNCK+ C+ YTC CH++ DH L+R ++ M+CM
Sbjct: 130 ----KTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCM 185
Query: 1051 KCLIIQPVGSTCSTTSCKNFSMARYYCRICKLFDDE--REIYHCPYCNLCRVGKGLGIDY 1108
C +QP C CKN M RYYC CKL+DD+ + YHC C +CR+G+GLG DY
Sbjct: 186 ICSKVQPAAQYCKY--CKN-CMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDY 242
Query: 1109 FHCMNCNACMSRSL-QVHICREKSFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDY 1167
FHC C C+ S+ H C E+S NCPIC E +F+S L C H +H C ++Y
Sbjct: 243 FHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEY 302
Query: 1168 TCTHYTCPICSKSLGDMKVYFSMLDALLAEEKMPPEY 1204
T+Y CP C K++ ++ F +LD + + MP Y
Sbjct: 303 IRTNYRCPTCYKTIINVNSLFRILDMEIERQPMPYPY 339
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 118/209 (56%), Gaps = 6/209 (2%)
Query: 1001 EKLIFGCKHYKRNCKLVATCCNSLYTCIRCHDEVADHALDRKSISEMMCMKCLIIQPVGS 1060
E+ GC+HY R C L A CC+ LYTC CHD DH LDR + E+ C+ C IQ
Sbjct: 14 ERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQ 73
Query: 1061 TCSTTSCKNFSMARYYCRICKLFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSR 1120
TC S YYC IC LFD +++ YHC C +CR+G D+FHC+ CN C++
Sbjct: 74 TCEECS---TLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKE--DFFHCLKCNLCLAM 128
Query: 1121 SLQ-VHICREKSFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSK 1179
+LQ H C E NCPIC ED+ +S A LPCGH++H TC+++ Y CP+C
Sbjct: 129 NLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 188
Query: 1180 SLGDMKVYFSMLDALLAEEKMPPEYLGQT 1208
S DM Y+ LD +A+ MP EY T
Sbjct: 189 SALDMTRYWRQLDDEVAQTPMPSEYQNMT 217
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 115/204 (56%), Gaps = 6/204 (2%)
Query: 1006 GCKHYKRNCKLVATCCNSLYTCIRCHDEVADHALDRKSISEMMCMKCLIIQPVGSTCSTT 1065
GC+HY R C L A CC+ LYTC CHD DH LDR + E+ C+ C +Q TC
Sbjct: 19 GCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDC 78
Query: 1066 SCKNFSMARYYCRICKLFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSLQ-V 1124
S YYC IC LFD ++ YHC C +CR+G D+FHC+ CN C++ +L+
Sbjct: 79 S---TLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKE--DFFHCLKCNLCLTTNLRGK 133
Query: 1125 HICREKSFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLGDM 1184
H C E NCPIC ED+ +S A LPCGH++H TC+++ Y CP+C S DM
Sbjct: 134 HKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDM 193
Query: 1185 KVYFSMLDALLAEEKMPPEYLGQT 1208
Y+ LD +A+ MP EY T
Sbjct: 194 TRYWRQLDTEVAQTPMPSEYQNVT 217
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
CP+C ED ++ + LPC H+ H+ C + H TCP+C KSL
Sbjct: 228 CPVCKED-YTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
CP+C ED ++ + LPC H+ H+ C + H TCP+C KSL
Sbjct: 227 CPVCKED-YTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
CP+C ED ++ + LPC H+ H+ C + H TCP+C KSL
Sbjct: 228 CPVCKED-YTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
CP+C ED ++ + LPC H+ H +C + H +CP+C KSL
Sbjct: 231 CPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 1134 DN-CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
DN C IC ED+ N +K LPCGH+ H+TC + + TCP C
Sbjct: 286 DNICIICREDM---VNHSKKLPCGHIFHTTCLRSWFQRQQTCPTC 327
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 1136 CPICHEDLFSSTNP------AKALPCGHMMHSTCFQDYTCTHYTCPICSKSL--GDMKVY 1187
C IC +D+ +T AK LPCGHM+H C + + TCPIC S+ D +
Sbjct: 320 CIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSWMERSQTCPICRLSVFANDSNSH 379
Query: 1188 FSMLDALLAEEKMPPEYL 1205
+ A E+ PP+ L
Sbjct: 380 ATT----QAREQTPPDLL 393
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
CP+C +D ++ + LPC H+ H C + H +CP+C KSL
Sbjct: 229 CPVCKDD-YALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
CP+C ED ++ + LPC H HS+C + H TCP+C KSL
Sbjct: 229 CPVCKED-YTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
CP+C ED ++ + LPC H HS+C + H TCP+C KSL
Sbjct: 228 CPVCKED-YTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
CP+C +D + + LPC H+ H C + H +CP+C KSL
Sbjct: 232 CPVCKDD-YGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLGDMKVYFSMLDA 1193
D+C IC + S A+ LPCGH+ H++C + + +CP C SL ++ D
Sbjct: 339 DDCAIC----WDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSL-------NIADG 387
Query: 1194 LLAEEKMPPEYLGQTQVRNPLIPLNVANVSPDI-------FFDG 1230
A E E L + L+P+ A P + FDG
Sbjct: 388 SRAREDHQGENLDEN-----LVPVAAAEGRPRLNQHNHFFHFDG 426
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLGDM--KVYFSML 1191
D C IC E + T+ + LPC H H C + H TCP+C + V+
Sbjct: 301 DCCAICIE-AYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKLDVLKFYGYVFLGSE 359
Query: 1192 DALLAEEKMPPEYLGQTQVRNPLIPLN 1218
+++L + PP+ L + R+ LN
Sbjct: 360 ESILEYQPDPPQGLALVEARDESADLN 386
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
+NC +C E+ F + + LPC H+ H C + H TCP+C K+LG
Sbjct: 267 ENCAVCIEN-FKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALG 318
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 1122 LQVHICRE-----KSFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPI 1176
LQV R+ +S DNC +C E + + + LPC H+ H +C + H TCP+
Sbjct: 258 LQVRTIRKGDKETESDFDNCAVCIEG-YKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPM 316
Query: 1177 CS----KSLG 1182
C K+LG
Sbjct: 317 CKMNILKALG 326
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
D+C IC + S A+ LPCGH+ H++C + + +CP C SL
Sbjct: 339 DDCAIC----WDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSL 382
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKS 1180
++C ICHE +F S N + L CGH H CF+ + TCP C S
Sbjct: 1929 NSCEICHE-IFKSKN-MRVLKCGHKFHKGCFKQWLKGQSTCPTCGSS 1973
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2
SV=1
Length = 338
Score = 43.9 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1131 SFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
S + C +C +D F AK +PC H+ H C + H +CP+C L
Sbjct: 219 SEFNQCAVCMDD-FEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHEL 268
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis GN=syvn1-b
PE=2 SV=1
Length = 595
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1133 MDN-CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
MDN C IC E++ S AK LPC H+ H++C + + TCP C
Sbjct: 281 MDNVCIICREEMVSG---AKRLPCNHIFHTSCLRSWFQRQQTCPTC 323
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 1130 KSFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
+S DNC +C E + + + LPC H+ H +C + H TCP+C K+LG
Sbjct: 272 ESDFDNCAVCIEG-YKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALG 327
>sp|Q566M8|RN150_DANRE RING finger protein 150 OS=Danio rerio GN=rnf150 PE=2 SV=1
Length = 419
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 1122 LQVHICRE-----KSFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPI 1176
LQV R+ +S DNC +C E + + + LPC H+ H C + H TCP+
Sbjct: 248 LQVRTIRKGDQETESDFDNCAVCIEG-YKPNDVVRILPCRHLFHKCCVDPWLVDHRTCPM 306
Query: 1177 CS----KSLG 1182
C K+LG
Sbjct: 307 CKMNILKALG 316
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1136 CPICHEDLFSSTNP-AKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
CPIC++D+ + A +PCGH+ C Q + H TCP+C K +
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEV 153
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1 SV=1
Length = 551
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 1134 DN-CPICHEDLFSSTN---------PAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLGD 1183
DN C IC ++L S N K LPCGH++H +C +++ TCPIC + D
Sbjct: 346 DNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPICRLPVFD 405
Query: 1184 MK 1185
K
Sbjct: 406 EK 407
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1
SV=2
Length = 617
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1133 MDN-CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
MDN C IC E++ + AK LPC H+ H++C + + TCP C
Sbjct: 287 MDNVCIICREEMVTG---AKRLPCNHIFHTSCLRSWFQRQQTCPTC 329
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis GN=syvn1-a
PE=2 SV=1
Length = 605
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1133 MDN-CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
MDN C IC E++ + AK LPC H+ H++C + + TCP C
Sbjct: 281 MDNVCIICREEMVTG---AKRLPCNHIFHTSCLRSWFQRQQTCPTC 323
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 17/63 (26%)
Query: 1136 CPICHEDLFSSTNPA-----------------KALPCGHMMHSTCFQDYTCTHYTCPICS 1178
C IC E++F +P K LPCGH++H C +++ TCPIC
Sbjct: 292 CTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPICR 351
Query: 1179 KSL 1181
+S+
Sbjct: 352 RSV 354
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1 SV=1
Length = 241
Score = 42.0 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 1134 DNCPICHEDLFSSTNPAKALP-CGHMMHSTCFQDYTCTHYTCPICSKSL 1181
D+C +C +D F ++LP C HM H C ++ H +CP+C + +
Sbjct: 194 DSCSVCLQD-FQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 1107 DYFHCMNCNACMSRSLQVHICREKSFMDN--CPICHEDLFSSTNPAKALP-CGHMMHSTC 1163
D H ++ + +S+ V + + F D C +C DL + A+ LP C H H C
Sbjct: 89 DPLHNAGLDSKILQSIHVVVFKCTDFKDGLECAVCLSDLVDG-DKARVLPRCNHGFHVDC 147
Query: 1164 FQDYTCTHYTCPICSKSLGDMK 1185
+ +H TCP+C ++G ++
Sbjct: 148 IDMWFQSHSTCPLCRNTVGSVE 169
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 1134 DN-CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
DN C IC E++ + AK LPC H+ HS+C + + TCP C
Sbjct: 288 DNVCIICREEMVTG---AKKLPCNHIFHSSCLRSWFQRQQTCPTC 329
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
+NC +C E+ F + + LPC H+ H C + H TCP+C K+LG
Sbjct: 263 ENCAVCIEN-FKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALG 314
>sp|Q2TA44|RN148_BOVIN RING finger protein 148 OS=Bos taurus GN=RNF148 PE=2 SV=1
Length = 303
Score = 41.2 bits (95), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
DNC +C D++ + + L C H+ H C + H TCP+C
Sbjct: 254 DNCVVCF-DIYKPQDVVRILTCKHIFHKACIDPWLLAHRTCPMC 296
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 1123 QVHICREKSFMDNCPICHEDLFSSTNPAKALP-CGHMMHSTCFQDYTCTHYTCPICSKSL 1181
V I E+ F +C +C + FS T+ + LP C H H C + ++ TCP+C +SL
Sbjct: 196 NVTISLEQPF--DCAVCLNE-FSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252
Query: 1182 GDMKVYFSMLDALLA 1196
V ++ + L+A
Sbjct: 253 STSNVCYNHSETLVA 267
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
D C IC++D+ N A PC H H C + + TCP+C
Sbjct: 535 DICSICYQDM----NSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 40.8 bits (94), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
D+C +C E + + + LPC H+ H +C + H TCP+C K+LG
Sbjct: 262 DHCAVCIES-YKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMCKLNILKALG 313
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 40.8 bits (94), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
D+C +C E + + + LPC H+ H +C + H TCP+C K+LG
Sbjct: 262 DHCAVCIES-YKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMCKLNILKALG 313
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 40.8 bits (94), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
D C IC++D+ N A PC H H C + + TCP+C
Sbjct: 535 DICSICYQDM----NSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 1122 LQVHICR--EKSF---MDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPI 1176
LQ+H + EK +NC +C E+ + + + + LPC H+ H C + H TCP+
Sbjct: 245 LQLHRVKKGEKGIDIDAENCAVCIEN-YKTKDLVRILPCKHIFHRLCIDPWLIEHRTCPM 303
Query: 1177 CS----KSLG 1182
C K+LG
Sbjct: 304 CKLDVIKALG 313
>sp|Q7TPV2|DZIP3_MOUSE E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=2 SV=2
Length = 1204
Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
C ICHE+L S LPC H HS C + + TCP C
Sbjct: 1144 CVICHENL--SPENLSVLPCAHKFHSQCIRPWLMQQGTCPTC 1183
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 1129 EKSFMD-NCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSL 1181
E S MD C IC E++ ++P K LPC H+ H+ C + + TCP C +
Sbjct: 284 ELSAMDATCIICREEMTVESSP-KRLPCSHVFHAHCLRSWFQRQQTCPTCRTDI 336
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1
SV=3
Length = 612
Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 1133 MDN-CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
+DN C IC E++ + AK LPC H+ H++C + + TCP C
Sbjct: 287 VDNVCIICREEMVTG---AKRLPCNHIFHTSCLRSWFQRQQTCPTC 329
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 40.4 bits (93), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 1135 NCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
+C ICHE +F S N + L CGH H CF+ + CP C
Sbjct: 1956 SCEICHE-VFKSKN-VRVLKCGHKYHKGCFKQWLKGQSACPAC 1996
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
D+C +C E + + + LPC H+ H +C + H TCP+C K+LG
Sbjct: 262 DHCAVCIES-YKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMCKLNILKALG 313
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
D+C +C E L+ + + L C H+ H TC + H TCP+C K+LG
Sbjct: 275 DSCAVCIE-LYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDILKALG 326
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
D+C +C E L+ + + L C H+ H TC + H TCP+C K+LG
Sbjct: 275 DSCAVCIE-LYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDILKALG 326
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27 PE=2
SV=1
Length = 221
Score = 40.0 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 1118 MSRSLQVHICREKSFMDNCPICHEDLFSSTNPAKALP-CGHMMHSTCFQDYTCTHYTCPI 1176
++R +V I + +C +C +D F ++LP C HM H C + H +CP+
Sbjct: 158 LNRIPKVRITDTSPEIVSCSVCLQD-FQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPL 216
Query: 1177 CSKSL 1181
C + L
Sbjct: 217 CRRHL 221
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
D+C +C E L+ + + L C H+ H TC + H TCP+C K+LG
Sbjct: 275 DSCAVCIE-LYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDILKALG 326
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2 SV=1
Length = 431
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 1134 DNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICS----KSLG 1182
D+C +C E L+ + + L C H+ H TC + H TCP+C K+LG
Sbjct: 278 DSCAVCIE-LYKPNDLVRILTCNHVFHKTCVDPWLLEHRTCPMCKCDILKALG 329
>sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo sapiens GN=DZIP3 PE=1 SV=2
Length = 1208
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 1136 CPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPIC 1177
C ICHE+L S LPC H H+ C + + TCP C
Sbjct: 1148 CVICHENL--SPENLSVLPCAHKFHAQCIRPWLMQQGTCPTC 1187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,807,389
Number of Sequences: 539616
Number of extensions: 19092590
Number of successful extensions: 46433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 46246
Number of HSP's gapped (non-prelim): 313
length of query: 1231
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1102
effective length of database: 121,958,995
effective search space: 134398812490
effective search space used: 134398812490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)