Query 000906
Match_columns 1231
No_of_seqs 404 out of 1624
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 16:30:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000906.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_675-679//hhsearch_pdb/000906hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 1.0 1 1 360.4 7.1 138 992-1134 4-142 (143)
2 2p0n_A Hypothetical protein NM 1.0 1 1 104.3 11.8 151 590-761 15-169 (172)
3 2p0n_A Hypothetical protein NM 1.0 1 1 99.1 17.2 153 32-213 13-168 (172)
4 3cax_A Uncharacterized protein 1.0 1 1 95.3 15.6 149 590-756 8-162 (369)
5 1v87_A Deltex protein 2; ring- 1.0 1 1 91.0 4.4 55 1130-1184 22-95 (114)
6 2k2d_A Ring finger and CHY zin 1.0 1 1 90.9 -0.5 52 1174-1229 1-52 (79)
7 2l0b_A E3 ubiquitin-protein li 1.0 1 1 90.6 2.8 51 1131-1182 38-88 (91)
8 2ecl_A Ring-box protein 2; RNF 1.0 1 1 90.3 4.2 50 1132-1182 25-75 (81)
9 1x4j_A Ring finger protein 38; 1.0 1 1 89.0 2.0 53 1131-1184 21-73 (75)
10 2ep4_A Ring finger protein 24; 1.0 1 1 88.0 4.0 57 1128-1185 10-66 (74)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=1.00 E-value=1 Score=360.41 Aligned_cols=138 Identities=41% Similarity=0.972 Sum_probs=132.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997557334644644422253222365697215932102237876540000111144446423578766777557853
Q 000906 992 GQQPSYRDTEKLIFGCKHYKRNCKLVATCCNSLYTCIRCHDEVADHALDRKSISEMMCMKCLIIQPVGSTCSTTSCKNFS 1071 (1231)
Q Consensus 992 ~~~psy~d~~~~~~GC~HY~R~ckL~cpCC~k~Y~CR~CHDe~~dH~ldR~~~~~vlC~~C~~~Qpv~~~C~~~sC~g~~ 1071 (1231)
|..|+++|++++++||+||+|+|+|+||||++|||||+||||.++|+++|+.+++|+||.|+++||+++.|++ | |..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~--C-g~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCHHCCCEEEECCCCCCCCCCCCCCC--C-CCC
T ss_conf 8888643434576788366888617888789814614420334556643110504442356760654673887--7-862
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 341716755555699970038999754458988844324888864334443-410012578898
Q 000906 1072 MARYYCRICKLFDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRSL-QVHICREKSFMD 1134 (1231)
Q Consensus 1072 fa~Y~C~iCkl~Dddk~~yHC~~CgICRvG~gL~~d~fHC~~C~~C~s~~l-~~HkC~E~~~~~ 1134 (1231)
|++|||+||||||++|+||||++|||||+|+ ++|||||++||+|++++| ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CEEEEECEEECCCCCCCEECCCCCCCEECCC--CCCCEECCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 0106711004355778604278887324468--7576788918823635657674657667668
No 2
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=104.27 Aligned_cols=151 Identities=16% Similarity=0.187 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCC-CCCCHH
Q ss_conf 98711688999999999988999841135--7-8888999999999999999985114321232001001454-554202
Q 000906 590 PIPMDLIFFFHKALKKDLDYLVFGSAQLA--E-NALFLVEFHRRFNLIRLLYEIHSDAEDEIAFPAMEAKGKL-QNISHS 665 (1231)
Q Consensus 590 ~~Pid~If~fHKALRrEL~~L~~~a~rl~--~-D~~~i~~l~~Rf~~L~~~yr~Hs~aEDEvIfPALeaR~~l-~NVs~s 665 (1231)
..||+.+.--|+.+|+.+..|...+.++. + |......+..-+.+|...++.|+..|++++||+|..+.+. .+....
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 21999999999999999999999999998759983999999999999987798777407888519998638514489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 36757779998999999999999873200456320347888999999999999999999999998897789876799862
Q 000906 666 YSIDHRLEAEHFKKISNILIEMLELQASVSSNESNAQDKRMLKYKQLCIRLQDICKSMHKLLSEHIHREETELWPLFREC 745 (1231)
Q Consensus 666 yslEHk~Ee~Lf~~Is~lLa~l~~L~~~~~a~~~~~~~~~~~~y~~La~~La~~~~sL~tsL~qHL~~EE~el~PLl~~h 745 (1231)
...||.....+...+...|..+... ...+ . . . ..++.+...+.+|+++||. +||.+.+.
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~-----~~~~-~-~---------~----~~l~~~~~~l~~Hi~~EE~-lfP~a~~~ 153 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEAD-----NAYV-P-D---------E----EAFKRFVAGYDVHLAIEEP-LFDMGNTF 153 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----TTCC-C-C---------H----HHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-----CCCC-C-C---------H----HHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 9999999999999999999998769-----9774-3-4---------9----9999999999999999877-77999976
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 8999999999989506
Q 000906 746 FSIEEQEKIIKCMLGR 761 (1231)
Q Consensus 746 FS~eEqa~Lv~r~ias 761 (1231)
+|.++|.+|+.++...
T Consensus 154 L~~~~~~~l~~~~~~r 169 (172)
T 2p0n_A 154 IPKEKLTEIGEIMAAR 169 (172)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 9999999999999977
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=1.00 E-value=1 Score=99.08 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=122.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC---HH
Q ss_conf 999643449999999999999999999874117989989999999999999999986411520243384874100---12
Q 000906 32 LVDAPILLLVYFHKAQRAELVELHRLAVTALERGFHDRKLILELQRRFEFLKVVYKYHCVAEDEVIFLALDAHIK---NV 108 (1231)
Q Consensus 32 ~~~~pi~~~~~~HkAlR~eL~~L~~la~~~~~~d~~d~~~i~~l~~r~~~l~~~~~~H~~aEDevIfPaL~~r~~---nv 108 (1231)
....||+++.--|+.+|+.+..|.+++..+...+ .++.....+..-+.+|...++.||..|++++||+|..+.+ +.
T Consensus 13 ~~~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~ 91 (172)
T 2p0n_A 13 TFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENG-CNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQES 91 (172)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 1621999999999999999999999999998759-983999999999999987798777407888519998638514489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 46587655329999999999985220899888731788999996778999886599888621027888754345788766
Q 000906 109 VSTYSLEHESIDELFDSVFDLLNVLLGGSENVSKPFQEVVFCIGTIKTFICQHMLKEEEQYVLSSKYPTASLVNEGGIHE 188 (1231)
Q Consensus 109 ~~~~~~EH~~~d~Lfd~i~~lL~~~~~~~~~~~~~~~eLa~~i~~l~t~l~qHl~~EE~q~~~~~~~~~~~~~~~~~~~~ 188 (1231)
+..+..||..+..+++.+...+..+..+... ... +..+..+...+.+|+.+||.
T Consensus 92 i~~l~~EH~~~~~~l~~l~~~l~~~~~~~~~-~~~----~~~l~~~~~~l~~Hi~~EE~--------------------- 145 (172)
T 2p0n_A 92 VDELLRQHIGLHDNWAAVSAEFAKLEADNAY-VPD----EEAFKRFVAGYDVHLAIEEP--------------------- 145 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-CCC----HHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCC----HHHHHHHHHHHHHHHHHHHH---------------------
T ss_conf 9999999999999999999999998769977-434----99999999999999999877---------------------
Q ss_pred CCHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 5213478730899999999976730
Q 000906 189 DEVFPLLVRQFSSTEQASLVCQFLC 213 (1231)
Q Consensus 189 ~~v~PLl~~~fS~~Eqa~Lv~~f~~ 213 (1231)
+||.+.+.+|.++|.+|+.++..
T Consensus 146 --lfP~a~~~L~~~~~~~l~~~~~~ 168 (172)
T 2p0n_A 146 --LFDMGNTFIPKEKLTEIGEIMAA 168 (172)
T ss_dssp --HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHCCHHHHHHHHHHHHH
T ss_conf --77999976999999999999997
No 4
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=1.00 E-value=1 Score=95.30 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=82.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CC-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 98711688999999999988999841135-78-----8889999999999999999851143212320010014545542
Q 000906 590 PIPMDLIFFFHKALKKDLDYLVFGSAQLA-EN-----ALFLVEFHRRFNLIRLLYEIHSDAEDEIAFPAMEAKGKLQNIS 663 (1231)
Q Consensus 590 ~~Pid~If~fHKALRrEL~~L~~~a~rl~-~D-----~~~i~~l~~Rf~~L~~~yr~Hs~aEDEvIfPALeaR~~l~NVs 663 (1231)
-.||+.+..=|++||+.|..|...+.++. +. ...+..+..-+..|..+-+.|+.-|-++|||.|+.+ ...+.+
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~-g~~~p~ 86 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERR-GLTVIA 86 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTT-TCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCC
T ss_conf 9878999999999999999999999998603652113678999999999999878876312576663899984-998789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02367577799989999999999998732004563203478889999999999999999999999988977898767998
Q 000906 664 HSYSIDHRLEAEHFKKISNILIEMLELQASVSSNESNAQDKRMLKYKQLCIRLQDICKSMHKLLSEHIHREETELWPLFR 743 (1231)
Q Consensus 664 ~syslEHk~Ee~Lf~~Is~lLa~l~~L~~~~~a~~~~~~~~~~~~y~~La~~La~~~~sL~tsL~qHL~~EE~el~PLl~ 743 (1231)
..+..||.....++..+..++.... . . ... ..+..+ ...+.++...+.+|+++||.-+||.+.
T Consensus 87 ~vM~~eHd~~r~~l~~l~~~~~~~~-------~-~--~~~---~~~~~~----~~~l~~~~~~l~~Hi~kEe~iLfP~a~ 149 (369)
T 3cax_A 87 TVLWTKHDEIRAMIKQLAELLRKRE-------E-M--PWE---EFVEKF----KAKAGEVAFALSDMVFRENNIFYPTLK 149 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGG-------G-S--CHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCC-------C-C--CHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2677776999999999999984545-------6-6--415---689999----999999999999999999988999999
Q ss_pred HHCCHHHHHHHHH
Q ss_conf 6289999999999
Q 000906 744 ECFSIEEQEKIIK 756 (1231)
Q Consensus 744 ~hFS~eEqa~Lv~ 756 (1231)
+.||.++|..|-.
T Consensus 150 ~~ls~~dw~~i~~ 162 (369)
T 3cax_A 150 ALLSEGEWKAIKM 162 (369)
T ss_dssp HHCCHHHHHHHHH
T ss_pred HHCCHHHHHHHHH
T ss_conf 8689999999982
No 5
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=91.00 Aligned_cols=55 Identities=24% Similarity=0.526 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCCCCCCCC--------------CCCEECCCCCCCCHHHHHHHH-----CCCCCCCCCCCCCCCH
Q ss_conf 788988763223444689--------------992675868936577599831-----0299987788560573
Q 000906 1130 KSFMDNCPICHEDLFSST--------------NPAKALPCGHMMHSTCFQDYT-----CTHYTCPICSKSLGDM 1184 (1231)
Q Consensus 1130 ~~~~~~CPIClE~Lf~s~--------------~~v~~LpCGH~fH~~Ci~~wl-----~~~~tCPICRksi~dm 1184 (1231)
...+..||||++++.... ..++.++|||.||..||..|+ ..+.+||+||+.+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999684078100374443332223455752135229979960499999999703677898699999823777
No 6
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=90.93 Aligned_cols=52 Identities=31% Similarity=0.307 Sum_probs=48.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87788560573788897599884049993321146899985147889999972212
Q 000906 1174 CPICSKSLGDMKVYFSMLDALLAEEKMPPEYLGQTQVRNPLIPLNVANVSPDIFFD 1229 (1231)
Q Consensus 1174 CPICRksi~dm~~~f~~LD~~Ia~qpmPeeyr~~~q~~~~~I~C~~C~~s~~~~~~ 1229 (1231)
||+|+|+++||+.+|++||.+|+++|||++|+++. ++|.||+|+....+.|+
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~----v~I~CnDC~~~s~v~~h 52 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMT----VDILCNDCNGRSTVQFH 52 (79)
T ss_dssp --------------------------------CCE----EEEEESSSCCEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCE----EEEECCCCCCCCCCCCE
T ss_conf 98354169999999999999998578998995979----37899999987527740
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=90.61 Aligned_cols=51 Identities=29% Similarity=0.686 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 8898876322344468999267586893657759983102999877885605
Q 000906 1131 SFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLG 1182 (1231)
Q Consensus 1131 ~~~~~CPIClE~Lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPICRksi~ 1182 (1231)
..+..|+||++. |.....++.+||||.||..||..|+..+.+||+||+.+.
T Consensus 38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCCCCCCHH-HCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 899988436902-158982796279994899999999976996838094079
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=90.34 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCCCCCCCCEE-CCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 898876322344468999267-586893657759983102999877885605
Q 000906 1132 FMDNCPICHEDLFSSTNPAKA-LPCGHMMHSTCFQDYTCTHYTCPICSKSLG 1182 (1231)
Q Consensus 1132 ~~~~CPIClE~Lf~s~~~v~~-LpCGH~fH~~Ci~~wl~~~~tCPICRksi~ 1182 (1231)
.+..||||+++ +.....++. ++|||.||..||.+|+..+.+||+||+.+.
T Consensus 25 ~~~~C~iC~~~-~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 25 VMDACLRCQAE-NKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TTSCCTTHHHH-TCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred HHCCCCCCCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 65648600022-5788568994899984475999999986898988297843
No 9
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=88.97 Aligned_cols=53 Identities=34% Similarity=0.735 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 889887632234446899926758689365775998310299987788560573
Q 000906 1131 SFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLGDM 1184 (1231)
Q Consensus 1131 ~~~~~CPIClE~Lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPICRksi~dm 1184 (1231)
.....|+||++. +.....++.+||||.||..||..|++.+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCEECCCC-CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 799989388935-27998699878998757999999997499390708807888
No 10
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=88.02 Aligned_cols=57 Identities=25% Similarity=0.690 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 2578898876322344468999267586893657759983102999877885605737
Q 000906 1128 REKSFMDNCPICHEDLFSSTNPAKALPCGHMMHSTCFQDYTCTHYTCPICSKSLGDMK 1185 (1231)
Q Consensus 1128 ~E~~~~~~CPIClE~Lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPICRksi~dm~ 1185 (1231)
.+...+..|+||++. +.....++.+||||.||..||..|++.+.+||+||+.+..+.
T Consensus 10 ~~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 10 KELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCCCCCCCCC-CCCCCCEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 268999989577920-179972787089998549999999985996979593416611
Done!