BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000907
(1230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 21/162 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITGNITISGYPKNQETF 744
LN ++ + G AL+G +GSGK+TL+ +AG + T G Y PK++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV- 77
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLS--SEVNSKTRXXXXXXXXXXXXXNPLRQ 802
G QN P++TVY+++ + LR + E++ K R + +
Sbjct: 78 ----GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH--------IDK 125
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L P LS Q++R+ IA LV P ++ +DEP S LD
Sbjct: 126 LLNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Score = 37.4 bits (85), Expect = 0.046, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGGQ++RV LV L +DE + LD+ + L + L G + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTH 192
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239
E + D I ++ +G+I+ G + V + PK K + FL
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEV--------YYKPKYKFVGGFL 234
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 75/190 (39%), Gaps = 22/190 (11%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+L V+ F G + ++G GSGKTTL+ +LAG G I + G P + +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA---AAGEIFLDGSPADPFLLRKN 82
Query: 748 SGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 806
GY QN TV E + +S + E + R LVG
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVL-------------ELVG 129
Query: 807 LPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDT 861
L G+ LS Q++RL IA L + + +DEP S LD +
Sbjct: 130 LSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE 189
Query: 862 GRTVVCTIHQ 871
G+ ++ H+
Sbjct: 190 GKGIILVTHE 199
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 82/213 (38%), Gaps = 44/213 (20%)
Query: 12 LKASGKVTYNGHDMHEFVPQRTAAYISQH-DIHIGEMTVRETLAFSARCQGVGSRYDMLV 70
L A+G++ +G F+ ++ Y+ Q+ I TV E +AFS G+
Sbjct: 61 LAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDES----- 115
Query: 71 ELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGI 130
E+ +R I KVL+L + D + +
Sbjct: 116 EMRKR--------------------------------IKKVLELVGLSGLAAADPL--NL 141
Query: 131 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQP 190
SGGQ++R+ ML L +DE + LD + I L + G L++
Sbjct: 142 SGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVT---H 198
Query: 191 APEVYNLFDDIILVSDGQIVYQGPLEH-VEQFF 222
E + D I+ +S+G I + G E VE+ F
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEFVEREF 231
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 738
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 739 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 786
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 787 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 846
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 847 XXXXXXXXXXXXXDTGRTVVCTIHQPS 873
GRTV+ H+ S
Sbjct: 176 SEHVIMRNMHKIC-KGRTVIIIAHRLS 201
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 187
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G +I + V N D II++ G+IV QG
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 738
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 739 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 786
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 787 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 846
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 847 XXXXXXXXXXXXXDTGRTVVCTIHQPS 873
GRTV+ H+ S
Sbjct: 174 SEHVIMRNMHKIC-KGRTVIIIAHRLS 199
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 185
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G +I + V N D II++ G+IV QG
Sbjct: 186 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 738
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 739 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 786
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 787 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 846
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 847 XXXXXXXXXXXXXDTGRTVVCTIHQPS 873
GRTV+ H+ S
Sbjct: 180 SEHVIMRNMHKIC-KGRTVIIIAHRLS 205
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 191
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G +I + V N D II++ G+IV QG
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 225
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 38/207 (18%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 738
D V+L+ ++ + + G + ++G GSGK+TL ++ R YI G + I G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 739 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 786
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 787 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 846
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 847 XXXXXXXXXXXXXDTGRTVVCTIHQPS 873
GRTV+ H+ S
Sbjct: 176 SEHVIMRNMHKIC-KGRTVIIIAHRLS 201
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 187
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G +I + V N D II++ G+IV QG
Sbjct: 188 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 221
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 53/213 (24%)
Query: 16 GKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73
G++ +GHD+ E+ R + ++H+ TV +A+ AR + + S
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-ARTE----------QYS 446
Query: 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGG 133
R + + E D+I K +D DTV+G+ + +SGG
Sbjct: 447 REQ------------------IEEAARMAYAMDFINK---MDNGLDTVIGENGVL-LSGG 484
Query: 134 QRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI-----SLL 188
QR+R+ L+ + L +DE ++ LD+ + I +L + N T+L+ S +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTI 542
Query: 189 QPAPEVYNLFDDIILVSDGQIVYQGP----LEH 217
+ A D+I++V DG IV +G LEH
Sbjct: 543 EKA-------DEIVVVEDGVIVERGTHNDLLEH 568
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 34/227 (14%)
Query: 629 RRRNSSSQSRETTIETDQPKNRGM-VLPFEPFSLTFDEITYSV---DMPQEMKRRGVHDD 684
+R ++ Q+ T ++++Q K+ G V+ + F +T++ D+P
Sbjct: 309 QRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPA---------- 358
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYPKNQE 742
L ++ G AL+G +GSGK+T+ ++ TR Y G I + G+ +
Sbjct: 359 ----LRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGEILMDGHDLREY 410
Query: 743 TFTRISGYCE--QNDIHSPYVTVYESLLYSAWLRLSSE-VNSKTRXXXXXXXXXXXXXNP 799
T + ++H TV ++ Y+ + S E + R N
Sbjct: 411 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFI-----NK 465
Query: 800 LRQALVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+ L + G NG LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ 741
K+ ++GVS + G AL+G +G GKTT + +LAG + T G I ++ ++ P
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR 801
R G QN P++TV+E++ + R S+ + R +
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL------ID 124
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L P LS Q++R+ +A LV P ++ DEP S LD
Sbjct: 125 NLLDRKP--TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 9/153 (5%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGGQ++RV LV L DE + LD++ + + L G + +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-GITSVYVTH 192
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHV----EQFFISMGFKCPKRKGIADFLQEVTSR 245
E + I + + G++V G + V + F++ P + DF V ++
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENK 252
Query: 246 K---DQEQYWVRNDEPYRFVTVKEFVHAFQSFH 275
+ ++ ++ EP V +KE V + H
Sbjct: 253 QTILKRDDVIIKLPEPVD-VKLKEVVVGIRPEH 284
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 31/170 (18%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETF 744
+LN +S + PG + ++G +G GKTTL+ LAG + +G I++SG + KN
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 745 TRIS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQ 802
R GY Q + P++TVY ++ Y N K R +
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG-------NGKGRTAQERQRI---------E 120
Query: 803 ALVGLPGVNGLSTEQRKRLT--------IAVELVANPSIIFMDEPTSGLD 844
A++ L G++ L+ L+ +A L +P +I +DEP S LD
Sbjct: 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 738
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 739 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 786
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 787 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 846
+VG G GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 847 XXXXXXXXXXXXXDTGRTVVCTIHQPS 873
GRTV+ H+ S
Sbjct: 180 SEHVIMRNMHKIC-KGRTVIIIAHRLS 205
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+T+VG E G+SGGQR+R+ LV L D+ ++ LD + I+ ++ + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM---HKI 191
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G +I + V N D II++ G+IV QG
Sbjct: 192 CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQG 225
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 39/200 (19%)
Query: 16 GKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73
G + +GHD+ E+ R + ++H+ TV +A+ AR + E S
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-ARTE----------EYS 446
Query: 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGG 133
R + + E D+I K +D DT++G+ + +SGG
Sbjct: 447 REQ------------------IEEAARMAYAMDFINK---MDNGLDTIIGENGVL-LSGG 484
Query: 134 QRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPE 193
QR+R+ L+ + L +DE ++ LD+ + I +L + N T+L+ +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV--IAHRLS 540
Query: 194 VYNLFDDIILVSDGQIVYQG 213
D+I++V DG IV +G
Sbjct: 541 TIEQADEIVVVEDGIIVERG 560
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYPKNQETFTRISGYCE--QN 754
G AL+G +GSGK+T+ ++ TR Y G+I + G+ + T +
Sbjct: 369 GKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424
Query: 755 DIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNG-- 812
++H TV ++ Y+ + E + + N + L + G NG
Sbjct: 425 NVHLFNDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALD 512
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY---PKNQETF 744
+L G++ + G AL+G +G GK+T + ++ ++ + G ++I G N
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QA 803
I G Q + T+ E++ Y E+ + P +
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL---PHQFDT 518
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGR 863
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GR 576
Query: 864 TVVCTIHQPSI----DIFEAFDAGI 884
T + H+ S D+ FD G+
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGV 601
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 58 RCQ-GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV 116
R Q G+ S+ +L + S E A D V + +VR +EAN I +I + D
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIA--YGDNSRVVSYEEIVRAAKEAN-IHQFIDSLPD--- 1159
Query: 117 CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN 176
+T VGD+ + +SGGQ++R+ LV H L +DE ++ LD+ + + +L +
Sbjct: 1160 KYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR 1218
Query: 177 HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
G I + + N D I+++ +G++ G + +
Sbjct: 1219 E---GRTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHGTHQQL 1256
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 88 DVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG--ISGGQRKRVTTGEMLV 145
DV M + + +EAN D+I+K L DT+VG+ RG +SGGQ++R+ LV
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 146 GPAHALFMDEISTGLDSST 164
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 37/178 (20%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 738
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 739 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 786
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 787 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 185
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G +I + V N D II++ G+IV QG
Sbjct: 186 CKGRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 37/178 (20%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 738
D V+L+ ++ + + G + ++G +GSGK+TL ++ R YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 739 KNQETFTRISGYCEQNDI------------HSPYVTVYESLLYSAWLRLSSEVNSKTRXX 786
+ R G Q+++ +P ++V E ++Y+A L + + S+ R
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 787 XXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+T+VG E G+SGGQR+R+ LV L DE ++ LD + I+ ++ + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKI 191
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G +I + V N D II++ G+IV QG
Sbjct: 192 CKGRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQG 225
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY---PKNQETF 744
+L G++ + G AL+G +G GK+T + ++ ++ + G ++I G N
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QA 803
I G Q + T+ E++ Y E+ + P +
Sbjct: 463 REIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL---PHQFDT 518
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGR 863
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GR 576
Query: 864 TVVCTIHQPSI----DIFEAFDAGI 884
T + H+ S D+ FD G+
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGV 601
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 12/162 (7%)
Query: 58 RCQ-GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV 116
R Q G+ S+ +L + S E A D V + +VR +EAN I +I + D
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIA--YGDNSRVVSYEEIVRAAKEAN-IHQFIDSLPD--- 1159
Query: 117 CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN 176
+T VGD+ + +SGGQ++R+ LV H L +DE ++ LD+ + + +L +
Sbjct: 1160 KYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR 1218
Query: 177 HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
G I + + N D I+++ +G++ G + +
Sbjct: 1219 E---GRTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHGTHQQL 1256
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 88 DVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG--ISGGQRKRVTTGEMLV 145
DV M + + +EAN D+I+K L DT+VG+ RG +SGGQ++R+ LV
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 146 GPAHALFMDEISTGLDSST 164
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQET----FTRISGYCE 752
G +TAL+G +GSGK+T++ +L R Y +G I++ G+ Q ++I +
Sbjct: 370 GSVTALVGPSGSGKSTVLSLL----LRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425
Query: 753 QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QALVGLPGVN 811
+ + S ++ E++ Y A S R P +VG GV
Sbjct: 426 EPILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 871
LS Q++R+ IA L+ NP I+ +DE TS LD D GRTV+ H+
Sbjct: 484 -LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHR 541
Query: 872 PS 873
S
Sbjct: 542 LS 543
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 88/208 (42%), Gaps = 39/208 (18%)
Query: 14 ASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLV 70
ASG ++ +GHD+ + P + +SQ I + ++ E +A+ A
Sbjct: 397 ASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI-LFSCSIAENIAYGA------------- 442
Query: 71 ELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGI 130
D V + + R + AN + + + +TVVG++ + +
Sbjct: 443 -------------DDPSSVTAEEIQRVAEVANAVA----FIRNFPQGFNTVVGEKGVL-L 484
Query: 131 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQP 190
SGGQ++R+ L+ L +DE ++ LD+ + + +L + +++G ++ +
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL---DRLMDGRTVLVIAHR 541
Query: 191 APEVYNLFDDIILVSDGQIVYQGPLEHV 218
+ N + + ++ G+I G E +
Sbjct: 542 LSTIKNA-NMVAVLDQGKITEYGKHEEL 568
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 11/180 (6%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET----FTRISGYCEQN 754
G +TAL+G +GSGK+T++ +L + +G I++ G+ Q ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 755 DIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QALVGLPGVNGL 813
+ S ++ E++ Y A S R P +VG GV L
Sbjct: 459 ILFS--CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-L 515
Query: 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQPS 873
S Q++R+ IA L+ NP I+ +DE TS LD D GRTV+ H S
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHLS 574
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 88/208 (42%), Gaps = 39/208 (18%)
Query: 14 ASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLV 70
ASG ++ +GHD+ + P + +SQ I + ++ E +A+ A
Sbjct: 428 ASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI-LFSCSIAENIAYGA------------- 473
Query: 71 ELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGI 130
D V + + R + AN + + + +TVVG++ + +
Sbjct: 474 -------------DDPSSVTAEEIQRVAEVANAVA----FIRNFPQGFNTVVGEKGVL-L 515
Query: 131 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQP 190
SGGQ++R+ L+ L +DE ++ LD+ + + +L + +++G ++ +
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL---DRLMDGRTVLVIAHH 572
Query: 191 APEVYNLFDDIILVSDGQIVYQGPLEHV 218
+ N + + ++ G+I G E +
Sbjct: 573 LSTIKNA-NMVAVLDQGKITEYGKHEEL 599
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 41/202 (20%)
Query: 15 SGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
SG + +GHD+ ++ +R A +SQ ++H+ T+ +A++A +G +R + + +
Sbjct: 397 SGSICLDGHDVRDYKLTNLRRHFALVSQ-NVHLFNDTIANNIAYAA--EGEYTR-EQIEQ 452
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGIS 131
+R+ A + I + + DTV+G E +S
Sbjct: 453 AARQAHAMEFIEN-----------------------------MPQGLDTVIG-ENGTSLS 482
Query: 132 GGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPA 191
GGQR+RV L+ A L +DE ++ LD+ + I +L + N T L+ +
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLV--IAHR 538
Query: 192 PEVYNLFDDIILVSDGQIVYQG 213
D+I++V +G+I+ +G
Sbjct: 539 LSTIEQADEILVVDEGEIIERG 560
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYPKNQETFTR 746
L+ VS + G AL+G +GSGK+T+ ++ TR Y +G+I + G+ T
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 747 ISGY---CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQA 803
+ + QN +H T+ ++ Y+A E + + Q
Sbjct: 415 LRRHFALVSQN-VHLFNDTIANNIAYAA----EGEYTREQIEQAARQAHAMEFIENMPQG 469
Query: 804 LVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L + G NG LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
+N ++ + G L+G +G GKTT + ++AG T G I G+ ++ P +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNPLRQA 803
+ Q+ P++TVYE++ + ++ E++ + R + +
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ--------IEEL 134
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L P LS QR+R+ +A +V P ++ MDEP S LD
Sbjct: 135 LNRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGGQR+RV +V L MDE + LD+ + + + L T I +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 200
Query: 190 PAPEVYNLFDDIILVSDGQIVYQG 213
E + D I +++ GQ++ G
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
+N ++ + G L+G +G GKTT + ++AG T G I G+ ++ P +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNPLRQA 803
+ Q+ P++TVYE++ + ++ E++ + R + +
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ--------IEEL 135
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L P LS QR+R+ +A +V P ++ MDEP S LD
Sbjct: 136 LNRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGGQR+RV +V L MDE + LD+ + + + L T I +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 201
Query: 190 PAPEVYNLFDDIILVSDGQIVYQG 213
E + D I +++ GQ++ G
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGGQ++RV L L DE ++ LD +TT I+ L N L G ++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITH 199
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQE 249
V + D + ++S+G++ +EQ +S F PK F+Q E
Sbjct: 200 EMDVVKRICDCVAVISNGEL--------IEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPE 251
Query: 250 QYWVR-NDEPY 259
Y R EP+
Sbjct: 252 DYQERLQAEPF 262
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI-TGNITISGYPKNQETFT 745
+ GVS R G + L+G +GSGKTT++ ++AG R T+G + G ++ P +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNPLRQA 803
R G QN ++TVY+++ + + E++++ R
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANR----- 141
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
P + LS Q++R+ +A L P ++ DEP + +D
Sbjct: 142 ---FP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 13/198 (6%)
Query: 681 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP 738
+DD +L +S +P + A G +G GK+T+ +L R Y G ITI G P
Sbjct: 10 AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL----ERFYQPTAGEITIDGQP 65
Query: 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXX 795
+ E + G+ Q D T+ E+L Y + E +
Sbjct: 66 IDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 796 XXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXX 855
+ L VG GV +S QR+RL IA + NP I+ +DE T+ LD
Sbjct: 125 MPDQLNTE-VGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 856 XXXXDTGRTVVCTIHQPS 873
GRT + H+ S
Sbjct: 183 DSLM-KGRTTLVIAHRLS 199
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 19/139 (13%)
Query: 89 VFMKAVVRE----GQEANVITDYILKVLDLDVCA----------DTVVGDEMLRGISGGQ 134
M +RE G E + + + +VLDL +T VG+ ++ ISGGQ
Sbjct: 86 AIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK-ISGGQ 144
Query: 135 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEV 194
R+R+ + L +DE + LDS + + +L + ++ G + + +
Sbjct: 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL---DSLMKGRTTLVIAHRLSTI 201
Query: 195 YNLFDDIILVSDGQIVYQG 213
+ D I + GQI G
Sbjct: 202 VDA-DKIYFIEKGQITGSG 219
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 697 RPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI-TGNITISGY-------PKNQETFTR 746
+ G L+G +G GKTT + ++AG +RG I G+ ++ PK+++
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNPLRQAL 804
Y P++TVY+++ + LR E++ + R R+
Sbjct: 87 FQSYA-----LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE-- 139
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
LS QR+R+ + +V P + MDEP S LD
Sbjct: 140 --------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 128 RGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISL 187
R +SGGQR+RV G +V MDE + LD+ + L + L G I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYV 196
Query: 188 LQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
E + D I +++ G + G + V
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 40/229 (17%)
Query: 631 RNSSSQSRETTIETDQPK----NRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKL 686
R S+S R + ++P + + LP S++F+ + + ++
Sbjct: 308 RASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRY-----------FENTD 356
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETF 744
+L+GV+ + +PG L A++G TGSGK+TLM+++ RG + + K ++
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQAL 804
IS ++ + S T+ E+L + E+ + + +
Sbjct: 417 GHISAVPQETVLFSG--TIKENLKWGREDATDDEIVEAAKIAQ------------IHDFI 462
Query: 805 VGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 463 ISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLL 188
+SGGQ++RV L L D+ ++ LD +TT I+ L N L G ++ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLIT 221
Query: 189 QPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQ 248
V + D + ++S+G++ +EQ +S F PK F+Q
Sbjct: 222 HEMDVVKRICDCVAVISNGEL--------IEQDTVSEVFSHPKTPLAQKFIQSTLHLDIP 273
Query: 249 EQYWVR-NDEPY 259
E Y R EP+
Sbjct: 274 EDYQERLQAEPF 285
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 10/137 (7%)
Query: 124 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 183
D +SGGQ++RV L L D+ ++ LD +TT I+ L N L G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLT 216
Query: 184 LISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVT 243
++ + V + D + ++S+G++ +EQ +S F PK F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGEL--------IEQDTVSEVFSHPKTPLAQKFIQSTL 268
Query: 244 SRKDQEQYWVR-NDEPY 259
E Y R EP+
Sbjct: 269 HLDIPEDYQERLQAEPF 285
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 656 FEPFSLTFDEITYSVDM---------PQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMG 706
E FSLT E + V++ P++ R L ++ G AL+G
Sbjct: 2 LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHR--------TLKSINFFIPSGTTCALVG 53
Query: 707 VTGSGKTTLMDVLAGRKTRGY-ITGNITISGY---PKNQETFTRISGYCEQNDIHSPYVT 762
TGSGK+T+ +L R Y G+I I G N+ + I G Q+ I
Sbjct: 54 HTGSGKSTIAKLLY----RFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETI 109
Query: 763 VYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLR-QALVGLPGVNGLSTEQRKRL 821
Y ++LY EV T+ P + +VG G+ LS +R+R+
Sbjct: 110 KY-NILYGKLDATDEEVIKATKSAQLYDFIEAL---PKKWDTIVGNKGMK-LSGGERQRI 164
Query: 822 TIAVELVANPSIIFMDEPTSGLD 844
IA L+ +P I+ DE TS LD
Sbjct: 165 AIARCLLKDPKIVIFDEATSSLD 187
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF---HIVNSLGQF 175
DT+VG++ ++ +SGG+R+R+ L+ + DE ++ LDS T + V L +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 176 NHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
++ +S + A + IIL++ G+IV +G
Sbjct: 205 RTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 20/194 (10%)
Query: 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLM---DVLAGRKTRGYITGNITISGYPKNQE 742
L +L G++ R G + ++G +GSGK+T + ++L I I + N
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 743 TFTRISGYCEQNDIHSPYVTVYESLLYS-----AWLRLSSEVNSKTRXXXXXXXXXXXXX 797
G Q P++TV ++ + W R +E +
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-------- 127
Query: 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXX 857
L+ P + LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 128 --LKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 858 XXDTGRTVVCTIHQ 871
+ G T+V H+
Sbjct: 184 LANEGMTMVVVTHE 197
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 27/165 (16%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITGNITISGY------PKNQ 741
+S + G L+G +G GKTT + +AG TRG YI N+ PK +
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL--SSEVNSKTRXXXXXXXXXXXXXNP 799
+ Y P+ TVY+++ + LR E++ + R
Sbjct: 85 DVAXVFQSYALY-----PHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRK 139
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
R+ LS QR+R+ + ++ P + DEP S LD
Sbjct: 140 PRE----------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 128 RGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISL 187
R +SGGQR+RV G ++ DE + LD+ L + L G I +
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL-GVTTIYV 199
Query: 188 LQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
E D I + + G++ G + V
Sbjct: 200 THDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 11/167 (6%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYP- 738
+D K +L ++ +PG AL+G TGSGKTT++++L R Y G I + G
Sbjct: 364 YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM----RFYDVDRGQILVDGIDI 419
Query: 739 -KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXX 797
K + + R S D TV E+L Y E+ +
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHL-- 477
Query: 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
P V LS QR+ L I +ANP I+ +DE TS +D
Sbjct: 478 -PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741
+D++ +L ++ + G A +G++G GK+TL++++ + +G I I G+ N
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGH--NI 405
Query: 742 ETFTRIS-----GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXX 796
+ F S G +Q++I TV E++L EV +
Sbjct: 406 KDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLP 464
Query: 797 XNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
VG GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 465 QG--YDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 111 VLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVN 170
+++L DT VG+ ++ +SGGQ++R++ + + L +DE ++ LD + I
Sbjct: 460 IMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518
Query: 171 SLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
+L + + T LI + + + D I+++ +G IV G
Sbjct: 519 ALDVLSK--DRTTLIVAHRLSTITHA--DKIVVIENGHIVETG 557
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 21/178 (11%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDI 756
G + A++G G GK+TL+D+L G R +G I E + I G+ Q
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSI-GFVPQ-FF 75
Query: 757 HSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTE 816
SP+ S+L + S+ +N+ + + L + LS
Sbjct: 76 SSPFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 817 QRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDT-GRTVVCTIHQPS 873
QR+ + IA + + +I +DEPTS LD + TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 656 FEPFSLTFDEITYSVDMPQEM---KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGK 712
F P+ + F +++ VD+ +E R V D L G R G + ++G G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 713 TTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV-YESLLY 769
TT + +LAG T G + ++T++ P+ Y+ YE +Y
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--------------------YIKAEYEGTVY 435
Query: 770 SAWLRL-SSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 828
++ SS++NS PL + V LS + +R+ IA L+
Sbjct: 436 ELLSKIDSSKLNSN--------FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL 487
Query: 829 ANPSIIFMDEPTSGLD 844
+ I +DEP++ LD
Sbjct: 488 RDADIYLLDEPSAYLD 503
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 124 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 183
D L +SGG+ +RV L+ AH F DE S+ LD + + + N
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI---RRLANEGK 279
Query: 184 LISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPK--RKGIADFLQ 240
+ +++ V + D+I +VY P + F PK R GI +FLQ
Sbjct: 280 AVLVVEHDLAVLDYLSDVI-----HVVYGEP-------GVYGIFSKPKGTRNGINEFLQ 326
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 124 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 183
D + +SGGQR+RV G LV +DE + LD++ + + + + L G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRT 186
Query: 184 LISLLQPAPEVYNLFDDIILVSDGQIVYQG-PLE 216
+I + E L D I+++ G++ G PLE
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET--FTRISGYCEQNDI 756
G +G +G GK+TL+ ++AG +T IT G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 757 HSPYVTVYESLLYSAWLRLSSE--VNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLS 814
P+++V E++ + L + + +N + L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ--------LAHLLDRKP--KALS 135
Query: 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
QR+R+ I LVA PS+ +DEP S LD
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 24/198 (12%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYP---- 738
++ +L G+S + PG AL+G +G GK+T++ +L R Y T G I I G
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE----RFYDTLGGEIFIDGSEIKTL 1146
Query: 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXN 798
+ T ++I+ ++ + ++ E+++Y + +S T N
Sbjct: 1147 NPEHTRSQIAIVSQEPTLFD--CSIAENIIYGL------DPSSVTMAQVEEAARLANIHN 1198
Query: 799 PLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXX 853
+ + G G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 1199 FIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE 1258
Query: 854 XXXXXXDTGRTVVCTIHQ 871
+ GRT + H+
Sbjct: 1259 ALDRARE-GRTCIVIAHR 1275
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 32/200 (16%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+L G++ G AL+G +G GK+T++ +L + + G ITI G
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDG----------- 479
Query: 748 SGYCEQNDIHSPY------VTVYESLLYSAWLRLSSEVNSK--TRXXXXXXXXXXXXXNP 799
+ DI+ + V E L++ + + + + TR
Sbjct: 480 ---VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536
Query: 800 LR------QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXX 853
++ LVG G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 537 IKTLPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 854 XXXXXXDTGRTVVCTIHQPS 873
GRT + H+ S
Sbjct: 596 ALDKAAK-GRTTIIIAHRLS 614
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 119 DTVVGDEMLRG--ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN 176
+T VGD RG +SGGQ++R+ LV L +DE ++ LD+ + + +L +
Sbjct: 1208 ETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL---D 1261
Query: 177 HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G I + V N D I +VS+G I+ +G
Sbjct: 1262 RAREGRTCIVIAHRLNTVMNA-DCIAVVSNGTIIEKG 1297
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 119 DTVVGDEMLRG--ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN 176
+T+VGD RG +SGGQ++R+ LV L +DE ++ LD+ + + +L +
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL---D 598
Query: 177 HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G I + + N D II +GQ+V G
Sbjct: 599 KAAKGRTTIIIAHRLSTIRNA-DLIISCKNGQVVEVG 634
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 124 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 183
D + +SGGQR+RV G LV +DE + LD++ + + + + L G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRT 186
Query: 184 LISLLQPAPEVYNLFDDIILVSDGQIVYQG-PLE 216
+I + E L D I+++ G++ G PLE
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET--FTRISGYCEQNDI 756
G +G +G GK+TL+ ++AG +T IT G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 757 HSPYVTVYESLLYSAWLRLSSE--VNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLS 814
P+++V E++ + L + + +N + L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ--------LAHLLDRKP--KALS 135
Query: 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
QR+R+ I LVA PS+ +DEP S LD
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 24/210 (11%)
Query: 670 VDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM---DVLAGRKTRG 726
+D+ Q K G L +L G++ R G + ++G +GSGK+T + ++L
Sbjct: 25 IDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80
Query: 727 YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYS-----AWLRLSSEVNS 781
I I + N G Q P++TV ++ + W R +E +
Sbjct: 81 IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140
Query: 782 KTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841
L+ P + LS Q +R+ IA L P I+ DEPTS
Sbjct: 141 MELLDKVG----------LKDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTS 188
Query: 842 GLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 871
LD + G T+V H+
Sbjct: 189 ALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 10/195 (5%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA--GRKTRGYI-TGNITISGYPKNQETFT 745
L V+ + G ++MG +GSGK+T+++++ + T G + NI + ++ T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 746 RIS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQA 803
R G+ Q P +T E++ + ++ + R L +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE---LEER 137
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX-XXXXXXXXXXXXDTG 862
N LS Q++R+ IA L NP II D+PT LD + G
Sbjct: 138 FANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 863 RTVVCTIHQPSIDIF 877
+TVV H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 35/196 (17%)
Query: 656 FEPFSLTFDEITYSVDMPQEM---KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGK 712
F P+ + F +++ VD+ +E R V D L G R G + ++G G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 713 TTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV-YESLLY 769
TT + +LAG T G + ++T++ P+ Y+ YE +Y
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--------------------YIKAEYEGTVY 421
Query: 770 SAWLRL-SSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 828
++ SS++NS PL + V LS + +R+ IA L+
Sbjct: 422 ELLSKIDSSKLNSN--------FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL 473
Query: 829 ANPSIIFMDEPTSGLD 844
+ I +DEP++ LD
Sbjct: 474 RDADIYLLDEPSAYLD 489
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 124 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 183
D L +SGG+ +RV L+ AH F DE S+ LD + + + N
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI---RRLANEGK 265
Query: 184 LISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPK--RKGIADFLQ 240
+ +++ V + D+I +VY P + F PK R GI +FLQ
Sbjct: 266 AVLVVEHDLAVLDYLSDVI-----HVVYGEP-------GVYGIFSKPKGTRNGINEFLQ 312
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 671 DMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI 728
D+ E++ V+ + + G+ G + L+G G+GKTT + +AG R +G I
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 729 TGN-ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXX 787
N I+ P + I+ E I P +TVYE+L A+ N K +
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIF-PELTVYENLXXGAY-------NRKDKEGI 115
Query: 788 XXXXXXXXXXNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
P L++ L L G LS +++ L I L + P ++ DEP+ GL
Sbjct: 116 KRDLEWIFSLFPRLKERLKQLGGT--LSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 16/203 (7%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG----YITGNITISGYPKN 740
K+V L+ V+ G ++G +G+GKTT M ++AG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYS-AWLRLSSEVNSKTRXXXXXXXXXXXXXNP 799
R G Q P +T +E++ + +++S E K N
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXX 859
+ L G Q++R+ +A LV +PS++ +DEP S LD
Sbjct: 137 FPRELSG---------AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 860 DT-GRTVVCTIHQPSIDIFEAFD 881
G T++ H P+ DIF D
Sbjct: 188 SRLGVTLLVVSHDPA-DIFAIAD 209
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 128 RGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISL 187
R +SG Q++RV LV L +DE + LD+ + + L T L+
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 188 LQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
PA +++ + D + ++ G++V G E +
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 20/160 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG----RKTRGYITGNITISGYPKNQETF 744
L+ +S G ++G TG+GKT ++++AG R + G P+ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI- 74
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQAL 804
+ QN P++ V ++L + ++ + NPL
Sbjct: 75 ----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---- 126
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
LS +++R+ +A LV NP I+ +DEP S LD
Sbjct: 127 -------TLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 52/226 (23%)
Query: 15 SGKVTYNGHDMHEFVPQR-TAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73
SG++ +G D+ + P++ A++ Q+ M V++ L F R + +
Sbjct: 54 SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI----------- 102
Query: 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGG 133
K K + D D+ ++ ++ + N +T +SGG
Sbjct: 103 ---KDPKRVLDTARDLKIEHLL----DRNPLT------------------------LSGG 131
Query: 134 QRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPE 193
+++RV LV L +DE + LD T + L H N ++ + E
Sbjct: 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVL-HKKNKLTVLHITHDQTE 190
Query: 194 VYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239
+ D I +V DG+++ G E + F+ P +A F+
Sbjct: 191 ARIMADRIAVVMDGKLIQVGKPEEI--------FEKPVEGRVASFV 228
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 10/195 (5%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA--GRKTRGYI-TGNITISGYPKNQETFT 745
L V+ + G ++MG +GSGK+T+++++ + T G + NI + ++ T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 746 RIS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQA 803
R G+ Q P +T E++ + ++ + R L +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE---LEER 137
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX-XXXXXXXXXXXXDTG 862
N LS Q++R+ IA L NP II D+PT LD + G
Sbjct: 138 FANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 863 RTVVCTIHQPSIDIF 877
+TVV H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 124 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 183
D + +SGGQR+RV G LV +D+ + LD++ + + + + L G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRL-GRT 186
Query: 184 LISLLQPAPEVYNLFDDIILVSDGQIVYQG-PLE 216
+I + E L D I+++ G++ G PLE
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET--FTRISGYCEQNDI 756
G +G +G GK+TL+ ++AG +T IT G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 85
Query: 757 HSPYVTVYESLLYSAWLRLSSE--VNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLS 814
P+++V E++ + L + + +N + L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ--------LAHLLDRKP--KALS 135
Query: 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
QR+R+ I LVA PS+ +D+P S LD
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 16/203 (7%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG----YITGNITISGYPKN 740
K+V L+ V+ G ++G +G+GKTT M ++AG Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYS-AWLRLSSEVNSKTRXXXXXXXXXXXXXNP 799
R G Q P +T +E++ + +++S E K N
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH 136
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXX 859
+ L G Q++R+ +A LV +PS++ +DEP S LD
Sbjct: 137 FPRELSG---------GQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 860 DT-GRTVVCTIHQPSIDIFEAFD 881
G T++ H P+ DIF D
Sbjct: 188 SRLGVTLLVVSHDPA-DIFAIAD 209
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 128 RGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISL 187
R +SGGQ++RV LV L +DE + LD+ + + L T L+
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 188 LQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
PA +++ + D + ++ G++V G E +
Sbjct: 199 HDPA-DIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 24/195 (12%)
Query: 654 LPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKT 713
+ E + L +E+ Y+ + D L G++ + G +TA++G G GK+
Sbjct: 1 MSLEDYILKVEELNYN------------YSDGTHALKGINMNIKRGEVTAILGGNGVGKS 48
Query: 714 TLMDVLAG--RKTRGYITGNITISGYPKNQETFTRIS-GYCEQNDIHSPY-VTVYESLLY 769
TL G + + G I + Y + R S G Q+ + + +VY+ + +
Sbjct: 49 TLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF 108
Query: 770 SAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA 829
A VN K + L P + LS Q+KR+ IA LV
Sbjct: 109 GA-------VNMKLPEDEIRKRVDNALKRTGIEHLKDKP-THCLSFGQKKRVAIAGVLVM 160
Query: 830 NPSIIFMDEPTSGLD 844
P ++ +DEPT+GLD
Sbjct: 161 EPKVLILDEPTAGLD 175
Score = 36.6 bits (83), Expect = 0.088, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 124 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 183
D+ +S GQ+KRV +LV L +DE + GLD I+ L + L T
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 184 LISLLQPAPEVYNLF-DDIILVSDGQIVYQGPLEHV---EQFFISMGFKCPKRKGIADFL 239
+I+ ++ L+ D++ ++ +G+++ QG + V ++ + + P+ + + L
Sbjct: 198 IIATHD--IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEIL 255
Query: 240 QE 241
+E
Sbjct: 256 KE 257
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L +SG R G + L+G G+GK+TL+ AG T G G+I +G P + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 749 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 806
+H Y++ ++ ++ W L+ + KTR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR---------TELLNDVAGAL-A 115
Query: 807 LPGVNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXX 854
L G ST QR RL V + ANP+ ++ +DEP + LD
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKI 175
Query: 855 XXXXXDTGRTVVCTIH 870
G +V + H
Sbjct: 176 LSALSQQGLAIVXSSH 191
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 871
LS Q++R++IA L P ++ DEPTS LD + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGGQ++RV+ L L DE ++ LD ++ + Q G ++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
++ +I + G+I +G E V F P+ + FL+
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 254
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L +SG R G + L+G G+GK+TL+ +AG T G G+I +G P + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 749 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 806
+H Y++ ++ ++ W L+ + KTR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR---------TELLNDVAGAL-A 115
Query: 807 LPGVNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXX 854
L G ST QR RL V + ANP+ ++ +D+P + LD
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKI 175
Query: 855 XXXXXDTGRTVVCTIH 870
G +V + H
Sbjct: 176 LSALSQQGLAIVMSSH 191
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 34/170 (20%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L +SG R G + L+G G+GK+TL+ AG T G G+I +G P + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 749 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 806
+H Y++ ++ ++ W L+ + KTR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR---------TELLNDVAGAL-A 115
Query: 807 LPGVNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLD 844
L G ST QR RL V + ANP+ ++ +DEP + LD
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD 165
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 13/189 (6%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA--GRKTRGYITGNITISGYPKNQETF- 744
+L G+S + + G +++G +GSGK+TL+ +L T G + Y +E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 745 --TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQ 802
R G+ Q P +T E+++ + +K R L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELG------LGD 132
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTG 862
L P LS +++R+ IA L P ++F DEPT LD + G
Sbjct: 133 KLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 863 RTVVCTIHQ 871
++V H+
Sbjct: 191 TSIVMVTHE 199
Score = 37.0 bits (84), Expect = 0.069, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 86 DIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG---ISGGQRKRVTTGE 142
++ V M + + +EA +Y+L L L GD++ R +SGG+++RV
Sbjct: 102 NVIVPMLKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIAR 153
Query: 143 MLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDII 202
L LF DE + LDS+ T +++ + N GT+++ ++ E+ L +
Sbjct: 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINE--GGTSIV-MVTHERELAELTHRTL 210
Query: 203 LVSDGQIV 210
+ DG++V
Sbjct: 211 EMKDGKVV 218
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L +SG R G + L+G G+GK+TL+ +AG T G G+I +G P + T+++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 749 GYCEQNDIHSPYVTVYESLLYSA--WLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 806
+H Y++ ++ ++ W L+ + KTR N + AL
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR---------TELLNDVAGAL-A 115
Query: 807 LPGVNGLSTE-------QRKRLTIAVELV---ANPS--IIFMDEPTSGLDXXXXXXXXXX 854
L G ST QR RL V + ANP+ ++ +D+P LD
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKI 175
Query: 855 XXXXXDTGRTVVCTIH 870
G +V + H
Sbjct: 176 LSALSQQGLAIVMSSH 191
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX-XXXXXXXXXXXXDTGRTVVCTI 869
N LS Q++R+ IA L NP II DEPT LD + G+TVV
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVT 203
Query: 870 HQPSIDIF 877
H ++ F
Sbjct: 204 HDINVARF 211
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 33/164 (20%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR--KTRGYITGNITISGYP-----KNQ 741
LNG++ + G L A++G G GK++L+ L K G++ +++ P +N
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQND 80
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEV-NSKTRXXXXXXXXXXXXXNPL 800
I C+ + PY Y S++ + L E+ S R
Sbjct: 81 SLRENILFGCQ---LEEPY---YRSVIQACALLPDLEILPSGDRTE-------------- 120
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+G GVN LS Q++R+++A + +N I D+P S +D
Sbjct: 121 ----IGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 704 LMGVTGSGKTTLMDVLAG--RKTRGYITGN-ITISGYPKNQETFTRISGYCEQNDIHSPY 760
L+G TG+GK+ ++++AG + RG + N I+ P + R G+ Q+ P+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 761 VTVYESLLYSAWLR---LSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQ 817
++VY ++ Y LR P R LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 818 RKRLTIAVELVANPSIIFMDEPTSGLD 844
R+R+ +A LV P ++ +DEP S +D
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVD 158
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGG+R+RV LV L +DE + +D T ++ L +F ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTH 185
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
E L D++ ++ +G+IV +G L+ +
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 26/203 (12%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY----- 737
+DK +L G+S PG + A+MG GSGK+TL LAGR+ G + G
Sbjct: 12 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 70
Query: 738 -PKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXX 796
P+++ + Q + P V S L + +N+
Sbjct: 71 SPEDRAGEGIFMAF--QYPVEIPGV--------SNQFFLQTALNAVRSYRGQETLDRFDF 120
Query: 797 XNPLRQ--ALVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX 847
+ + + AL+ +P VN G S ++KR I V P + +DE SGLD
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
Query: 848 XXXXXXXXXXXXDTGRTVVCTIH 870
D R+ + H
Sbjct: 181 LKVVADGVNSLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 26/203 (12%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY----- 737
+DK +L G+S PG + A+MG GSGK+TL LAGR+ G + G
Sbjct: 31 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
Query: 738 -PKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXX 796
P+++ + Q + P V S L + +N+
Sbjct: 90 SPEDRAGEGIFMAF--QYPVEIPGV--------SNQFFLQTALNAVRSYRGQETLDRFDF 139
Query: 797 XNPLRQ--ALVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXX 847
+ + + AL+ +P VN G S ++KR I V P + +DE SGLD
Sbjct: 140 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 199
Query: 848 XXXXXXXXXXXXDTGRTVVCTIH 870
D R+ + H
Sbjct: 200 LKVVADGVNSLRDGKRSFIIVTH 222
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG----RKTRGYITGNITISGYPKNQ--- 741
L+GVS + G +T ++G GSGK+TL++V+ G + R Y + P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 742 ---ETFTRISGYCEQNDIHS-------PYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXX 791
TF E + + P + SL Y W+ E+ K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF-- 140
Query: 792 XXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
L+ + + LS Q K + I L+ NP +I MDEP +G+
Sbjct: 141 --------LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 108 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 167
IL+ L L D G+ +SGGQ K V G L+ + MDE G+
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 168 IVNSLGQFNHIL----NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
I FNH+L G + + V N D + ++ +GQI+ +G
Sbjct: 192 I------FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 26/171 (15%)
Query: 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFT 745
+++L G++ RPG +TAL+G GSGK+T+ +L + G + + G P Q
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL--QNLYQPTGGQLLLDGKPLPQY--- 84
Query: 746 RISGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQAL 804
E +H V E ++ L+ + T+ + +
Sbjct: 85 ------EHRYLHRQVAAVGQEPQVFGRSLQ-ENIAYGLTQKPTMEEITAAAVKSGAHSFI 137
Query: 805 VGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 844
GLP G TE QR+ + +A L+ P ++ +D+ TS LD
Sbjct: 138 SGLP--QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 186
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 23/198 (11%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+L G++ PG +TAL+G GSGK+T+ +L + G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ------ 85
Query: 748 SGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 806
+ + +H+ V E LL+ R + TR + + G
Sbjct: 86 ---YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISG 141
Query: 807 LPG---------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXX 857
P N LS QR+ + +A L+ P ++ +D+ TS LD
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYE 201
Query: 858 XXD-TGRTVVCTIHQPSI 874
+ RTV+ HQ S+
Sbjct: 202 SPEWASRTVLLITHQLSL 219
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 33/195 (16%)
Query: 656 FEPFSLTFDEITYSVDMPQEM---KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGK 712
F P+ + F + V++ +E R V D L G + G + ++G G GK
Sbjct: 266 FRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK 325
Query: 713 TTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYS 770
TT + LAG T G I ++T++ P+ Y + + YE +Y
Sbjct: 326 TTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YIKAD---------YEGTVYE 366
Query: 771 AWLRL-SSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA 829
++ +S++NS PL + VN LS + +R+ IA L+
Sbjct: 367 LLSKIDASKLNSN--------FYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR 418
Query: 830 NPSIIFMDEPTSGLD 844
+ I +DEP++ LD
Sbjct: 419 DADIYLLDEPSAYLD 433
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 14/184 (7%)
Query: 697 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT----ISGYPKN--QETFTRISGY 750
+ G + ++G G+GK+T + +LAG+ N + I + N Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 751 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGV 810
+ + YV + + + L + + + N L + +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE--NVLERE------I 156
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIH 870
LS + +R+ IA L+ N + F DEP+S LD + G++V+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 871 QPSI 874
++
Sbjct: 217 DLAV 220
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 37.4 bits (85), Expect = 0.057, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+S G+++RV L G L +DE + GLD +++ L + A I +
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
E+ F I+L+ DGQ + QG +E +
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDI 250
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.058, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 35/176 (19%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG-----------------YIT 729
L+GVS + G +T ++G GSGK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 730 GNITISGYPKNQETFTRISGYC--EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXX 787
G + P+ + T + E N SP SL Y W+ E+ K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESP----LNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 788 XXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
R+A LS Q K + I L+ NP +I MD+P +G+
Sbjct: 139 EFLKLSHLYD---RKA-------GELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 108 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 167
IL+ L L D G+ +SGGQ K V G L+ + MD+ G+
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHD 191
Query: 168 IVNSLGQFNHIL----NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
I FNH+L G + + V N D + ++ +GQI+ +G
Sbjct: 192 I------FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.058, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 35/176 (19%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG-----------------YIT 729
L+GVS + G +T ++G GSGK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 730 GNITISGYPKNQETFTRISGYC--EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXX 787
G + P+ + T + E N SP SL Y W+ E+ K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESP----LNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 788 XXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
L+ + + LS Q K + I L+ NP +I MDEP +G+
Sbjct: 139 EF----------LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 108 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 167
IL+ L L D G+ +SGGQ K V G L+ + MDE G+
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 168 IVNSLGQFNHIL----NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
I FNH+L G + + V N D + ++ +GQI+ +G
Sbjct: 192 I------FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 120 TVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHIL 179
T VG+ L+ +SGG+++RV ++ + +DE ++ LD+S I SL +
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV--CA 238
Query: 180 NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 216
N T ++ + V N D I+++ DG IV +G E
Sbjct: 239 NRTTIV-VAHRLSTVVNA-DQILVIKDGCIVERGRHE 273
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L VS PG AL+G +G+GK+T++ +L + +G I I G +Q T +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 749 ---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALV 805
G Q+ + T+ +++ Y + EV + + Q V
Sbjct: 128 SHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ--V 184
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
G G+ LS +++R+ IA ++ P II +DE TS LD
Sbjct: 185 GERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALD 222
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 11/167 (6%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG------Y 737
D +L GV+ G + ALMG G+GK+TL +LAG G I + G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 738 PKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXX 797
P + + Q + P VT+ L + +L EV
Sbjct: 74 PDERARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDW 131
Query: 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+ ++ + G S ++KR I LV P+ +DE SGLD
Sbjct: 132 D---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 22/111 (19%)
Query: 69 LVELSRREKAAK----------IIPDADIDVFMKAVVRE--GQEANVITDYI-----LKV 111
++ELS E+A K +P I F++ ++ G+E V + L++
Sbjct: 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALEL 128
Query: 112 LDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV-GPAHALFMDEISTGLD 161
LD D ++ + + G SGG++KR ++LV P +A+ +DE +GLD
Sbjct: 129 LDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV-LDETDSGLD 175
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGG+++RV ++V L +DE GLD ++ + ++ + G +I +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 196
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGP-LEHVEQF 221
V N D ++++ G+ V+ G +E +E++
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 871
LS +++R+ IA +V P I+ +DEP GLD G+TV+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGG+++RV ++V L +DE GLD ++ + ++ + G +I +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 198
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGP-LEHVEQF 221
V N D ++++ G+ V+ G +E +E++
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 231
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQ 871
LS +++R+ IA +V P I+ +DEP GLD G+TV+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 14/186 (7%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETF 744
+L G+S G + L+G G+GKTT + +++ +G +T+ G + E
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTVFGKNVVEEPHEVR 87
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQAL 804
IS E+ Y ++ +LR + + + L + +
Sbjct: 88 KLISYLPEE-------AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI 140
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXXDTGRT 864
V+ S ++L IA L+ NP + +DEPTSGLD G T
Sbjct: 141 KDR--VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 865 VVCTIH 870
++ + H
Sbjct: 199 ILVSSH 204
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-DV 718
S+ I SVD +++ G + L G+ +F GVLT++ GV+GSGK+TL+ D+
Sbjct: 632 SIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
Query: 719 LA 720
LA
Sbjct: 689 LA 690
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 22/167 (13%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+L G++ PG +TAL+G GSGK+T+ +L + G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ------ 85
Query: 748 SGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 806
+ + +H+ V E LL+ R + TR + + G
Sbjct: 86 ---YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISG 141
Query: 807 LPG---------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
P N LS QR+ + +A L+ P ++ +D TS LD
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 22/167 (13%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+L G++ PG +TAL+G GSGK+T+ +L + G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ------ 85
Query: 748 SGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTRXXXXXXXXXXXXXNPLRQALVG 806
+ + +H+ V E LL+ R + TR + + G
Sbjct: 86 ---YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFISG 141
Query: 807 LPG---------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
P N L+ QR+ + +A L+ P ++ +D TS LD
Sbjct: 142 FPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
LS ++R+ IA+ L+ +P ++ +DEPTS LD
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPK 739
+LN G F + +MG G+GKTTL+ +LAG + G + +S P+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQ 420
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 697 RPGVLTALMGVTGSGKTTLMDVLAGRK 723
RPG + L+G G GK+T + +LAG++
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+V +RG+SGGQ+ ++ H + +DE + LD + + +L +F
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE---- 948
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
+I + A NL +++ V DG++ G
Sbjct: 949 -GGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739
L +S +P V+ A++G+ +GK+ LM+ LAG+K +G+ G+ T+ + K
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK-KGFSLGS-TVQSHTK 76
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+V +RG+SGGQ+ ++ H + +DE + LD + + +L +F
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE---- 948
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
+I + A NL +++ V DG+ G
Sbjct: 949 -GGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 980
>pdb|2B9B|A Chain A, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|B Chain B, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|C Chain C, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
Length = 497
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 717 DVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQND 755
+V+A TR +TG++ I YP +Q T T + YC ND
Sbjct: 279 EVMAQLPTRVMVTGSL-IQAYPASQCTITPNTVYCRYND 316
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+V +RG+SGGQ+ ++ H + +DE + LD + + +L +F
Sbjct: 887 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE---- 942
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
+I + A NL +++ V DG+ G
Sbjct: 943 -GGVIIITHSAEFTKNLTEEVWAVKDGRXTPSG 974
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG 721
H + L+N VS G + A++G G+GK+TL+ +L G
Sbjct: 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 552 AYWYWLGVGALTGFIILFQFGFTLALSF-------LNPFGTSKAFISEESQ------STE 598
AYWY L +GA T F+ +F G+T L PF F+S E+
Sbjct: 636 AYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSGETVFMSMENPGLWILGCHN 695
Query: 599 HDSRTGGT---VQLSTCANSSSHITRSESRD---YVRRRNSSSQSR 638
D R G +++S+C ++ D Y+ +N++ + R
Sbjct: 696 SDFRNRGMTALLKVSSCDKNTGDYYEDSYEDISAYLLSKNNAIEPR 741
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 552 AYWYWLGVGALTGFIILFQFGFTLALSF-------LNPFGTSKAFISEESQ------STE 598
AYWY L +GA T F+ +F G+T L PF F+S E+
Sbjct: 635 AYWYILSIGAQTDFLSVFFSGYTFKHKMVYEDTLTLFPFSGETVFMSMENPGLWILGCHN 694
Query: 599 HDSRTGGT---VQLSTCANSSSHITRSESRD---YVRRRNSSSQSR 638
D R G +++S+C ++ D Y+ +N++ + R
Sbjct: 695 SDFRNRGMTALLKVSSCDKNTGDYYEDSYEDISAYLLSKNNAIEPR 740
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTL---MDVLAGRK 723
+ G F PGVLT + G SGKTTL +L+G+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
>pdb|4GIP|D Chain D, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|E Chain E, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|F Chain F, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
Length = 409
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 717 DVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQND 755
+V+A TR +TG++ I YP +Q T T + YC ND
Sbjct: 198 EVMAQLPTRVMVTGSL-IQAYPASQCTITPNTVYCRYND 235
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739
+S +P V+ A++G+ +GK+ LM+ LAG+K +G+ G+ T+ + K
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK-KGFSLGS-TVQSHTK 87
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLM 716
+L +S + PG L+G TGSGK+TL+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLL 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,502,549
Number of Sequences: 62578
Number of extensions: 1347008
Number of successful extensions: 4170
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3919
Number of HSP's gapped (non-prelim): 247
length of query: 1230
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1120
effective length of database: 8,089,757
effective search space: 9060527840
effective search space used: 9060527840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)