Query 000907
Match_columns 1230
No_of_seqs 571 out of 4420
Neff 8.6
Searched_HMMs 46136
Date Tue Apr 2 00:41:41 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 2E-196 5E-201 1775.2 83.0 1166 1-1230 158-1387(1391)
2 PLN03140 ABC transporter G fam 100.0 1E-187 3E-192 1831.7 125.5 1227 1-1230 208-1470(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 2E-165 4E-170 1632.6 117.9 1164 1-1229 104-1393(1394)
4 KOG0061 Transporter, ABC super 100.0 1.2E-92 2.7E-97 864.9 57.6 559 657-1230 22-612 (613)
5 PLN03211 ABC transporter G-25; 100.0 2.2E-91 4.8E-96 863.7 62.0 559 657-1227 36-659 (659)
6 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-90 2.5E-95 860.6 58.6 544 684-1230 36-617 (617)
7 TIGR00956 3a01205 Pleiotropic 100.0 5.5E-88 1.2E-92 894.3 62.1 566 657-1227 26-695 (1394)
8 PLN03140 ABC transporter G fam 100.0 6.7E-87 1.5E-91 878.2 59.4 569 656-1226 127-789 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 1.9E-81 4.1E-86 767.2 38.5 541 684-1228 126-732 (1391)
10 KOG0061 Transporter, ABC super 100.0 1.4E-77 3E-82 732.5 46.5 531 1-581 73-608 (613)
11 TIGR00955 3a01204 The Eye Pigm 100.0 8.4E-73 1.8E-77 701.0 50.8 536 1-580 68-612 (617)
12 PLN03211 ABC transporter G-25; 100.0 2.2E-70 4.8E-75 676.9 50.9 533 1-581 111-658 (659)
13 KOG0055 Multidrug/pheromone ex 100.0 2.7E-66 5.9E-71 636.7 36.6 196 654-873 981-1186(1228)
14 TIGR01257 rim_protein retinal- 100.0 1.6E-58 3.5E-63 607.7 56.2 201 660-882 1937-2139(2272)
15 KOG0054 Multidrug resistance-a 100.0 2.1E-58 4.5E-63 582.0 42.9 191 658-874 1136-1336(1381)
16 PLN03130 ABC transporter C fam 100.0 1.1E-55 2.3E-60 592.0 41.7 196 659-882 1236-1441(1622)
17 PLN03232 ABC transporter C fam 100.0 6.3E-55 1.4E-59 585.5 39.0 196 659-882 1233-1438(1495)
18 PTZ00265 multidrug resistance 100.0 2E-54 4.3E-59 574.3 34.9 201 659-882 1164-1427(1466)
19 TIGR00957 MRP_assoc_pro multi 100.0 4.9E-53 1.1E-57 568.1 37.1 196 659-882 1283-1488(1522)
20 COG1123 ATPase components of v 100.0 6.8E-52 1.5E-56 478.5 38.6 189 684-882 302-499 (539)
21 PTZ00243 ABC transporter; Prov 100.0 5.4E-51 1.2E-55 546.3 40.4 196 659-882 1307-1513(1560)
22 TIGR01271 CFTR_protein cystic 100.0 2.5E-50 5.4E-55 540.1 42.2 195 659-882 1216-1420(1490)
23 PRK13549 xylose transporter AT 100.0 5.1E-50 1.1E-54 489.4 36.4 190 686-882 275-474 (506)
24 PRK09700 D-allose transporter 100.0 5.2E-50 1.1E-54 490.3 34.4 187 688-882 278-478 (510)
25 PRK10261 glutathione transport 100.0 2.8E-49 6E-54 491.4 40.6 211 660-882 313-533 (623)
26 PRK10762 D-ribose transporter 100.0 1.5E-49 3.3E-54 484.6 36.4 187 688-882 267-464 (501)
27 TIGR03269 met_CoM_red_A2 methy 100.0 6.4E-49 1.4E-53 481.8 39.0 202 661-882 280-497 (520)
28 PRK15134 microcin C ABC transp 100.0 6E-49 1.3E-53 482.6 38.4 187 686-882 299-495 (529)
29 TIGR02633 xylG D-xylose ABC tr 100.0 5.3E-49 1.1E-53 480.7 36.7 190 686-882 273-472 (500)
30 PRK15439 autoinducer 2 ABC tra 100.0 6.6E-49 1.4E-53 479.1 36.9 187 688-882 278-472 (510)
31 PRK11288 araG L-arabinose tran 100.0 2E-48 4.3E-53 474.8 34.5 187 688-882 268-465 (501)
32 PRK10982 galactose/methyl gala 100.0 9.4E-48 2E-52 468.2 34.1 188 687-882 262-460 (491)
33 PRK10938 putative molybdenum t 100.0 1.8E-46 3.8E-51 457.3 33.1 202 660-882 260-472 (490)
34 COG4172 ABC-type uncharacteriz 100.0 2E-45 4.4E-50 396.6 34.8 212 660-882 276-496 (534)
35 PRK11819 putative ABC transpor 100.0 2.5E-43 5.4E-48 434.1 40.2 186 660-882 324-511 (556)
36 PRK15064 ABC transporter ATP-b 100.0 1.3E-43 2.8E-48 435.5 36.9 183 660-882 319-504 (530)
37 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.8E-42 3.9E-47 426.6 43.9 186 660-882 322-509 (552)
38 PRK13409 putative ATPase RIL; 100.0 6.9E-43 1.5E-47 427.1 33.8 183 660-882 340-523 (590)
39 COG1126 GlnQ ABC-type polar am 100.0 9.5E-44 2E-48 357.3 20.5 191 661-873 3-197 (240)
40 PRK11147 ABC transporter ATPas 100.0 1.5E-39 3.3E-44 405.7 43.8 186 660-882 319-506 (635)
41 PRK10636 putative ABC transpor 100.0 1.8E-39 3.8E-44 403.7 42.6 182 660-882 312-496 (638)
42 COG1116 TauB ABC-type nitrate/ 100.0 3.3E-41 7.1E-46 351.3 21.1 197 660-882 3-200 (248)
43 COG1136 SalX ABC-type antimicr 100.0 7.6E-41 1.7E-45 349.8 23.1 201 661-882 2-211 (226)
44 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.9E-40 6.4E-45 350.0 22.3 202 660-883 4-209 (254)
45 COG1135 AbcC ABC-type metal io 100.0 3.5E-40 7.6E-45 348.7 20.5 203 661-882 2-211 (339)
46 COG2884 FtsE Predicted ATPase 100.0 2.3E-40 5.1E-45 324.6 17.2 191 661-873 2-198 (223)
47 COG1127 Ttg2A ABC-type transpo 100.0 5E-40 1.1E-44 335.8 19.2 200 660-882 8-215 (263)
48 COG1125 OpuBA ABC-type proline 100.0 4.6E-40 1E-44 336.5 18.0 198 661-882 2-205 (309)
49 COG1131 CcmA ABC-type multidru 100.0 1.3E-39 2.7E-44 365.5 23.2 198 661-882 5-206 (293)
50 COG1129 MglA ABC-type sugar tr 100.0 2.2E-38 4.8E-43 364.4 32.5 187 688-882 274-470 (500)
51 COG1117 PstB ABC-type phosphat 100.0 1.8E-39 3.9E-44 324.2 18.5 194 660-873 7-209 (253)
52 COG3839 MalK ABC-type sugar tr 100.0 2.8E-39 6E-44 358.2 20.8 199 660-882 3-203 (338)
53 COG3842 PotA ABC-type spermidi 100.0 2.7E-39 5.8E-44 360.3 19.1 200 660-882 5-206 (352)
54 COG1120 FepC ABC-type cobalami 100.0 4E-39 8.7E-44 343.6 18.6 202 660-882 2-208 (258)
55 COG1118 CysA ABC-type sulfate/ 100.0 3.4E-39 7.3E-44 340.0 17.4 191 683-882 12-207 (345)
56 TIGR01257 rim_protein retinal- 100.0 1.6E-33 3.5E-38 372.3 70.5 201 659-882 927-1129(2272)
57 COG3638 ABC-type phosphate/pho 100.0 1.6E-38 3.5E-43 323.9 18.0 203 660-882 3-217 (258)
58 PLN03073 ABC transporter F fam 100.0 7.3E-37 1.6E-41 380.2 36.6 185 660-882 508-693 (718)
59 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-38 2.3E-43 315.4 14.0 185 687-882 16-202 (245)
60 PRK13537 nodulation ABC transp 100.0 1.2E-36 2.7E-41 345.1 25.3 199 660-882 7-207 (306)
61 COG0488 Uup ATPase components 100.0 2.6E-35 5.6E-40 349.7 36.7 176 659-873 320-497 (530)
62 PRK11650 ugpC glycerol-3-phosp 100.0 1.5E-36 3.2E-41 349.7 24.2 200 660-882 3-204 (356)
63 TIGR00960 3a0501s02 Type II (G 100.0 1.9E-36 4.2E-41 328.7 23.7 200 661-882 2-207 (216)
64 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-36 4.8E-41 345.0 25.0 202 661-882 2-210 (343)
65 PRK11432 fbpC ferric transport 100.0 2.4E-36 5.1E-41 346.9 24.6 199 660-882 6-206 (351)
66 TIGR03265 PhnT2 putative 2-ami 100.0 2.6E-36 5.5E-41 347.3 24.6 199 660-882 4-204 (353)
67 TIGR03258 PhnT 2-aminoethylpho 100.0 3.5E-36 7.7E-41 346.4 24.5 199 660-882 5-208 (362)
68 cd03261 ABC_Org_Solvent_Resist 100.0 4.5E-36 9.7E-41 330.1 24.0 198 662-882 2-206 (235)
69 COG3840 ThiQ ABC-type thiamine 100.0 9.9E-37 2.2E-41 296.1 16.4 181 691-882 17-199 (231)
70 COG1137 YhbG ABC-type (unclass 100.0 1.4E-37 3.1E-42 307.0 10.4 197 678-883 9-209 (243)
71 cd03259 ABC_Carb_Solutes_like 100.0 7.4E-36 1.6E-40 323.4 23.2 197 662-882 2-200 (213)
72 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.6E-36 1.9E-40 324.3 23.4 201 661-882 1-209 (218)
73 PRK09452 potA putrescine/sperm 100.0 9.9E-36 2.2E-40 343.8 25.1 199 660-882 14-214 (375)
74 PRK13536 nodulation factor exp 100.0 1.2E-35 2.7E-40 339.9 25.3 199 660-882 41-241 (340)
75 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.5E-35 3.3E-40 322.5 24.6 199 662-882 2-201 (220)
76 PRK10851 sulfate/thiosulfate t 100.0 1.1E-35 2.4E-40 342.1 24.5 202 660-882 2-206 (353)
77 cd03269 ABC_putative_ATPase Th 100.0 1.4E-35 3E-40 320.5 23.5 196 662-882 2-197 (210)
78 COG1124 DppF ABC-type dipeptid 100.0 6.3E-36 1.4E-40 308.0 19.6 201 660-882 3-211 (252)
79 PRK11607 potG putrescine trans 100.0 2.2E-35 4.9E-40 341.6 26.1 199 660-882 19-219 (377)
80 TIGR02673 FtsE cell division A 100.0 1.6E-35 3.5E-40 321.1 23.4 199 661-882 2-206 (214)
81 cd03234 ABCG_White The White s 100.0 2.5E-35 5.3E-40 322.0 24.5 208 661-882 4-213 (226)
82 cd03265 ABC_DrrA DrrA is the A 100.0 2.1E-35 4.5E-40 321.4 23.7 198 661-882 1-201 (220)
83 cd03292 ABC_FtsE_transporter F 100.0 1.9E-35 4.1E-40 320.7 23.3 198 662-882 2-205 (214)
84 TIGR01188 drrA daunorubicin re 100.0 1E-35 2.3E-40 338.3 22.0 188 684-882 4-193 (302)
85 cd03301 ABC_MalK_N The N-termi 100.0 2.5E-35 5.4E-40 319.4 23.7 197 662-882 2-200 (213)
86 PRK11000 maltose/maltodextrin 100.0 2.4E-35 5.1E-40 342.3 24.7 199 660-882 3-203 (369)
87 TIGR01288 nodI ATP-binding ABC 100.0 3.1E-35 6.8E-40 334.5 25.0 199 660-882 4-204 (303)
88 cd03266 ABC_NatA_sodium_export 100.0 2.5E-35 5.5E-40 320.5 22.9 202 661-882 2-205 (218)
89 TIGR01186 proV glycine betaine 100.0 2E-35 4.4E-40 338.6 23.0 189 683-882 3-199 (363)
90 COG4525 TauB ABC-type taurine 100.0 1.1E-35 2.3E-40 291.8 17.4 182 686-879 18-200 (259)
91 cd03219 ABC_Mj1267_LivG_branch 100.0 3.5E-35 7.7E-40 323.6 23.6 200 662-882 2-212 (236)
92 PRK11153 metN DL-methionine tr 100.0 3.8E-35 8.3E-40 338.0 24.7 202 661-882 2-210 (343)
93 cd03296 ABC_CysA_sulfate_impor 100.0 5.9E-35 1.3E-39 321.9 24.6 202 660-882 2-206 (239)
94 cd03226 ABC_cobalt_CbiO_domain 100.0 1.8E-35 3.9E-40 318.2 20.0 182 686-882 13-195 (205)
95 cd03218 ABC_YhbG The ABC trans 100.0 4.2E-35 9.1E-40 322.1 23.4 197 662-882 2-202 (232)
96 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.5E-35 5.4E-40 329.7 21.8 194 678-882 29-230 (269)
97 COG1122 CbiO ABC-type cobalt t 100.0 1.9E-35 4E-40 316.8 19.8 200 660-882 3-208 (235)
98 cd03262 ABC_HisP_GlnQ_permease 100.0 4.6E-35 1E-39 317.4 23.1 198 662-882 2-204 (213)
99 COG4181 Predicted ABC-type tra 100.0 1.5E-35 3.3E-40 284.5 16.7 201 661-882 7-215 (228)
100 cd03268 ABC_BcrA_bacitracin_re 100.0 4.3E-35 9.2E-40 316.2 21.9 193 662-882 2-195 (208)
101 COG3845 ABC-type uncharacteriz 100.0 6.8E-34 1.5E-38 319.0 32.0 204 660-882 257-472 (501)
102 PRK09536 btuD corrinoid ABC tr 100.0 5.1E-35 1.1E-39 339.4 23.3 202 660-882 3-208 (402)
103 PRK11629 lolD lipoprotein tran 100.0 1.1E-34 2.3E-39 318.5 24.6 196 660-874 5-208 (233)
104 cd03225 ABC_cobalt_CbiO_domain 100.0 4.1E-35 9E-40 317.2 20.9 186 686-882 14-203 (211)
105 TIGR03522 GldA_ABC_ATP gliding 100.0 9.1E-35 2E-39 330.1 24.7 198 660-882 2-201 (301)
106 cd03258 ABC_MetN_methionine_tr 100.0 6.3E-35 1.4E-39 320.8 22.4 202 661-882 2-210 (233)
107 PRK10908 cell division protein 100.0 1.1E-34 2.4E-39 316.2 24.0 199 661-882 2-206 (222)
108 PRK11248 tauB taurine transpor 100.0 1.3E-34 2.8E-39 321.1 24.5 196 661-882 2-198 (255)
109 cd03256 ABC_PhnC_transporter A 100.0 6.3E-35 1.4E-39 322.8 22.0 201 662-882 2-214 (241)
110 cd03260 ABC_PstB_phosphate_tra 100.0 8.4E-35 1.8E-39 318.4 22.3 198 662-882 2-209 (227)
111 cd03263 ABC_subfamily_A The AB 100.0 1.1E-34 2.3E-39 316.1 22.7 199 661-882 1-201 (220)
112 TIGR01166 cbiO cobalt transpor 100.0 9.7E-35 2.1E-39 308.5 21.6 179 685-873 4-188 (190)
113 TIGR02211 LolD_lipo_ex lipopro 100.0 1.5E-34 3.3E-39 315.2 23.3 201 661-882 2-210 (221)
114 TIGR03608 L_ocin_972_ABC putat 100.0 1.2E-34 2.6E-39 312.5 21.9 186 685-882 10-202 (206)
115 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-34 2.4E-39 316.7 21.7 195 662-882 2-201 (222)
116 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.6E-34 3.4E-39 319.2 23.0 197 662-882 2-205 (242)
117 PRK09493 glnQ glutamine ABC tr 100.0 2.2E-34 4.8E-39 317.7 24.2 199 661-882 2-205 (240)
118 PRK11264 putative amino-acid A 100.0 2.2E-34 4.7E-39 320.1 24.2 199 661-882 4-213 (250)
119 cd03235 ABC_Metallic_Cations A 100.0 5.7E-35 1.2E-39 316.4 19.0 187 686-882 12-201 (213)
120 PRK13637 cbiO cobalt transport 100.0 2E-34 4.4E-39 324.9 23.8 203 661-882 3-214 (287)
121 TIGR02315 ABC_phnC phosphonate 100.0 9.8E-35 2.1E-39 321.6 20.5 202 661-882 2-215 (243)
122 COG0411 LivG ABC-type branched 100.0 6.1E-35 1.3E-39 301.2 17.3 196 679-882 10-219 (250)
123 PRK11831 putative ABC transpor 100.0 3.1E-34 6.7E-39 321.1 24.4 200 660-882 7-213 (269)
124 PRK13538 cytochrome c biogenes 100.0 2.8E-34 6E-39 308.3 22.9 187 661-873 2-190 (204)
125 cd03264 ABC_drug_resistance_li 100.0 2.2E-34 4.8E-39 311.3 22.1 196 661-882 1-198 (211)
126 KOG0058 Peptide exporter, ABC 100.0 2.3E-35 5.1E-40 345.1 15.4 201 658-882 463-671 (716)
127 PRK13647 cbiO cobalt transport 100.0 3.1E-34 6.6E-39 321.6 23.5 200 660-882 4-207 (274)
128 PRK11247 ssuB aliphatic sulfon 100.0 2.8E-34 6E-39 317.5 22.7 191 660-882 12-203 (257)
129 PRK10070 glycine betaine trans 100.0 2.9E-34 6.2E-39 332.9 23.8 189 683-882 38-234 (400)
130 COG0410 LivF ABC-type branched 100.0 1.7E-34 3.7E-39 295.5 19.2 197 661-882 4-206 (237)
131 PRK10895 lipopolysaccharide AB 100.0 3.1E-34 6.7E-39 316.8 22.6 199 661-882 4-206 (241)
132 cd03257 ABC_NikE_OppD_transpor 100.0 3.5E-34 7.6E-39 314.1 22.9 203 661-882 2-215 (228)
133 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 6.7E-34 1.5E-38 312.9 24.5 197 661-882 2-201 (236)
134 PRK13634 cbiO cobalt transport 100.0 4E-34 8.7E-39 323.0 23.1 202 661-882 3-215 (290)
135 PRK10619 histidine/lysine/argi 100.0 7.2E-34 1.6E-38 316.7 24.9 200 660-882 5-221 (257)
136 TIGR01189 ccmA heme ABC export 100.0 5.4E-34 1.2E-38 304.8 22.8 185 662-873 2-188 (198)
137 PRK13651 cobalt transporter AT 100.0 4.5E-34 9.7E-39 323.3 23.3 204 660-882 2-234 (305)
138 PRK13650 cbiO cobalt transport 100.0 3.6E-34 7.8E-39 321.8 22.4 201 660-882 4-209 (279)
139 TIGR00972 3a0107s01c2 phosphat 100.0 6.4E-34 1.4E-38 315.3 24.1 199 661-882 2-212 (247)
140 PRK11124 artP arginine transpo 100.0 6.2E-34 1.3E-38 314.6 23.8 199 660-882 2-210 (242)
141 cd03231 ABC_CcmA_heme_exporter 100.0 4.1E-34 9E-39 306.0 21.7 191 662-882 2-194 (201)
142 PRK13643 cbiO cobalt transport 100.0 5.9E-34 1.3E-38 321.3 23.9 202 661-882 2-213 (288)
143 PRK15079 oligopeptide ABC tran 100.0 9.3E-34 2E-38 323.7 25.7 214 660-882 8-231 (331)
144 PRK13631 cbiO cobalt transport 100.0 5.5E-34 1.2E-38 324.4 23.4 203 660-882 21-245 (320)
145 PRK13543 cytochrome c biogenes 100.0 9.4E-34 2E-38 306.5 23.7 196 660-882 11-206 (214)
146 PRK13646 cbiO cobalt transport 100.0 6E-34 1.3E-38 321.2 23.1 203 660-882 2-215 (286)
147 PRK10584 putative ABC transpor 100.0 1.1E-33 2.4E-38 309.8 24.3 202 660-882 6-215 (228)
148 PRK14247 phosphate ABC transpo 100.0 1.1E-33 2.5E-38 314.1 24.7 202 660-882 3-214 (250)
149 TIGR03005 ectoine_ehuA ectoine 100.0 9.2E-34 2E-38 315.1 23.8 199 661-882 1-216 (252)
150 PRK14273 phosphate ABC transpo 100.0 1E-33 2.3E-38 315.0 24.1 200 660-882 7-218 (254)
151 PRK13539 cytochrome c biogenes 100.0 7.5E-34 1.6E-38 305.5 22.1 186 661-873 3-188 (207)
152 PRK11614 livF leucine/isoleuci 100.0 5.9E-34 1.3E-38 313.8 21.8 197 660-882 5-206 (237)
153 PRK13636 cbiO cobalt transport 100.0 9E-34 2E-38 319.3 23.7 200 660-882 5-211 (283)
154 cd03233 ABC_PDR_domain1 The pl 100.0 9.8E-34 2.1E-38 302.9 22.4 183 660-882 3-189 (202)
155 cd03298 ABC_ThiQ_thiamine_tran 100.0 7.6E-34 1.6E-38 307.2 21.8 195 662-882 2-198 (211)
156 TIGR01978 sufC FeS assembly AT 100.0 1.2E-33 2.6E-38 313.0 23.6 204 661-882 1-214 (243)
157 PRK13540 cytochrome c biogenes 100.0 1.2E-33 2.5E-38 302.5 22.7 185 661-873 2-188 (200)
158 PRK13641 cbiO cobalt transport 100.0 1.1E-33 2.3E-38 319.4 23.5 204 660-882 2-214 (287)
159 TIGR03415 ABC_choXWV_ATP choli 100.0 9.1E-34 2E-38 326.2 23.2 190 682-882 33-234 (382)
160 COG4152 ABC-type uncharacteriz 100.0 3.9E-34 8.4E-39 291.1 17.5 190 681-882 10-199 (300)
161 PRK13644 cbiO cobalt transport 100.0 9.9E-34 2.1E-38 317.4 22.6 198 661-882 2-204 (274)
162 cd03267 ABC_NatA_like Similar 100.0 1.3E-33 2.8E-38 310.0 22.9 189 683-882 31-223 (236)
163 PRK11231 fecE iron-dicitrate t 100.0 1E-33 2.2E-38 315.0 22.5 200 661-882 3-207 (255)
164 PRK13548 hmuV hemin importer A 100.0 1.4E-33 3E-38 313.9 23.3 198 661-882 3-210 (258)
165 PRK13635 cbiO cobalt transport 100.0 1.1E-33 2.3E-38 317.7 22.6 200 660-882 5-209 (279)
166 PRK14268 phosphate ABC transpo 100.0 1.9E-33 4.1E-38 313.3 24.3 199 660-882 12-222 (258)
167 TIGR03740 galliderm_ABC gallid 100.0 1.8E-33 3.8E-38 306.9 23.6 192 662-882 2-193 (223)
168 PRK14267 phosphate ABC transpo 100.0 1.7E-33 3.7E-38 313.3 23.8 202 660-882 4-217 (253)
169 PRK11300 livG leucine/isoleuci 100.0 1.6E-33 3.5E-38 314.1 23.4 202 660-882 5-223 (255)
170 TIGR03411 urea_trans_UrtD urea 100.0 1.7E-33 3.7E-38 311.3 23.4 200 661-882 3-211 (242)
171 PRK13652 cbiO cobalt transport 100.0 2E-33 4.4E-38 315.7 23.9 199 661-882 4-207 (277)
172 cd03300 ABC_PotA_N PotA is an 100.0 2.6E-33 5.7E-38 307.1 23.9 197 662-882 2-200 (232)
173 PRK14242 phosphate transporter 100.0 2.9E-33 6.3E-38 311.4 24.6 205 659-882 5-217 (253)
174 PRK14241 phosphate transporter 100.0 2.8E-33 6.2E-38 312.1 24.5 201 660-882 4-216 (258)
175 PRK13632 cbiO cobalt transport 100.0 1.8E-33 3.8E-38 315.4 22.9 200 660-882 7-211 (271)
176 PRK13638 cbiO cobalt transport 100.0 1.7E-33 3.6E-38 315.9 22.6 198 661-882 2-205 (271)
177 PRK10575 iron-hydroxamate tran 100.0 1.7E-33 3.7E-38 314.7 22.4 202 660-882 11-217 (265)
178 KOG0057 Mitochondrial Fe/S clu 100.0 2.6E-34 5.7E-39 324.3 15.7 197 657-882 348-554 (591)
179 TIGR01277 thiQ thiamine ABC tr 100.0 2E-33 4.3E-38 304.1 22.0 195 662-882 2-198 (213)
180 PRK13649 cbiO cobalt transport 100.0 2.6E-33 5.6E-38 316.2 23.8 203 660-882 2-214 (280)
181 TIGR02982 heterocyst_DevA ABC 100.0 3E-33 6.5E-38 304.3 23.4 202 661-882 2-210 (220)
182 PRK10744 pstB phosphate transp 100.0 3.1E-33 6.6E-38 312.0 23.8 203 657-882 10-224 (260)
183 PRK09984 phosphonate/organopho 100.0 2E-33 4.4E-38 314.0 22.4 204 660-882 4-222 (262)
184 cd03232 ABC_PDR_domain2 The pl 100.0 2.5E-33 5.5E-38 297.5 22.0 176 660-882 3-178 (192)
185 TIGR02769 nickel_nikE nickel i 100.0 3.4E-33 7.4E-38 312.3 24.2 208 661-882 3-220 (265)
186 PRK14245 phosphate ABC transpo 100.0 3.8E-33 8.3E-38 309.7 24.4 204 660-882 3-214 (250)
187 COG4598 HisP ABC-type histidin 100.0 2.4E-34 5.1E-39 278.0 12.6 187 678-873 11-213 (256)
188 PRK10253 iron-enterobactin tra 100.0 1.8E-33 4E-38 314.4 21.8 202 660-882 7-213 (265)
189 PRK13639 cbiO cobalt transport 100.0 3.1E-33 6.7E-38 313.9 23.7 199 661-882 2-206 (275)
190 TIGR03410 urea_trans_UrtE urea 100.0 2E-33 4.3E-38 308.2 21.5 195 661-882 1-201 (230)
191 COG4988 CydD ABC-type transpor 100.0 8.2E-34 1.8E-38 326.6 19.0 191 657-873 317-516 (559)
192 cd03213 ABCG_EPDR ABCG transpo 100.0 3.8E-33 8.3E-38 296.4 22.8 177 660-882 3-181 (194)
193 PRK14237 phosphate transporter 100.0 5.7E-33 1.2E-37 310.6 25.2 207 657-882 17-231 (267)
194 TIGR03873 F420-0_ABC_ATP propo 100.0 2.9E-33 6.4E-38 311.6 22.4 201 661-882 2-206 (256)
195 PRK14235 phosphate transporter 100.0 5.4E-33 1.2E-37 310.8 24.7 205 660-882 19-231 (267)
196 TIGR00968 3a0106s01 sulfate AB 100.0 5E-33 1.1E-37 305.8 23.5 197 662-882 2-200 (237)
197 COG2274 SunT ABC-type bacterio 100.0 8.1E-34 1.8E-38 347.8 18.8 201 655-882 466-676 (709)
198 PRK11022 dppD dipeptide transp 100.0 6.7E-33 1.5E-37 316.7 25.2 209 660-882 3-223 (326)
199 COG4559 ABC-type hemin transpo 100.0 1.2E-33 2.6E-38 281.8 16.4 200 661-882 2-210 (259)
200 TIGR01184 ntrCD nitrate transp 100.0 2.8E-33 6E-38 306.1 20.9 183 689-882 1-184 (230)
201 PRK11308 dppF dipeptide transp 100.0 7.8E-33 1.7E-37 316.0 25.3 210 660-882 5-224 (327)
202 PRK14259 phosphate ABC transpo 100.0 5E-33 1.1E-37 311.1 23.3 199 659-882 12-222 (269)
203 PRK09473 oppD oligopeptide tra 100.0 8.6E-33 1.9E-37 316.0 25.5 209 660-882 12-231 (330)
204 PRK14269 phosphate ABC transpo 100.0 5.3E-33 1.1E-37 307.6 23.0 204 661-882 3-210 (246)
205 PRK14250 phosphate ABC transpo 100.0 4.2E-33 9.2E-38 307.2 22.0 194 660-882 3-201 (241)
206 cd03299 ABC_ModC_like Archeal 100.0 6.6E-33 1.4E-37 304.4 23.4 184 688-882 14-199 (235)
207 PRK14256 phosphate ABC transpo 100.0 7.8E-33 1.7E-37 307.6 24.3 205 660-882 4-216 (252)
208 TIGR02868 CydC thiol reductant 100.0 1E-33 2.3E-38 349.1 19.1 188 659-872 333-529 (529)
209 PRK13547 hmuV hemin importer A 100.0 3.8E-33 8.2E-38 311.1 21.8 203 661-882 2-224 (272)
210 PRK13640 cbiO cobalt transport 100.0 4.3E-33 9.3E-38 313.7 22.4 202 660-882 5-212 (282)
211 PRK13645 cbiO cobalt transport 100.0 5E-33 1.1E-37 314.8 23.0 204 660-882 6-220 (289)
212 PRK13549 xylose transporter AT 100.0 3.7E-33 8E-38 341.1 23.6 204 660-882 5-212 (506)
213 TIGR02142 modC_ABC molybdenum 100.0 3.2E-33 7E-38 323.8 21.6 179 691-882 15-201 (354)
214 PRK13648 cbiO cobalt transport 100.0 7.7E-33 1.7E-37 310.1 23.9 200 660-882 7-211 (269)
215 cd03297 ABC_ModC_molybdenum_tr 100.0 4.9E-33 1.1E-37 301.4 21.2 183 684-882 11-201 (214)
216 PRK10247 putative ABC transpor 100.0 6E-33 1.3E-37 302.6 21.9 195 660-882 7-206 (225)
217 cd03230 ABC_DR_subfamily_A Thi 100.0 6E-33 1.3E-37 289.6 20.9 161 662-882 2-164 (173)
218 TIGR02324 CP_lyasePhnL phospho 100.0 1E-32 2.2E-37 301.4 23.4 205 661-882 2-218 (224)
219 PRK15093 antimicrobial peptide 100.0 1.1E-32 2.5E-37 316.1 24.9 211 660-882 3-228 (330)
220 COG0444 DppD ABC-type dipeptid 100.0 1E-32 2.2E-37 297.9 22.8 208 661-882 2-223 (316)
221 PRK15112 antimicrobial peptide 100.0 7.6E-33 1.6E-37 309.6 22.7 208 661-882 5-219 (267)
222 PRK11144 modC molybdate transp 100.0 4E-33 8.7E-38 322.4 20.9 175 691-882 16-198 (352)
223 PRK13633 cobalt transporter AT 100.0 7E-33 1.5E-37 311.8 22.4 204 660-882 4-213 (280)
224 KOG0055 Multidrug/pheromone ex 100.0 1.1E-33 2.4E-38 349.4 17.2 201 656-882 346-556 (1228)
225 PRK14260 phosphate ABC transpo 100.0 1.3E-32 2.8E-37 306.8 23.9 200 660-882 7-218 (259)
226 PRK10771 thiQ thiamine transpo 100.0 6.8E-33 1.5E-37 304.1 21.3 196 661-882 2-199 (232)
227 PRK14240 phosphate transporter 100.0 1.3E-32 2.9E-37 305.6 23.9 200 660-882 3-214 (250)
228 PRK14274 phosphate ABC transpo 100.0 1.3E-32 2.9E-37 306.8 24.0 204 660-882 12-223 (259)
229 PRK14270 phosphate ABC transpo 100.0 1.5E-32 3.2E-37 305.2 23.7 200 660-882 4-215 (251)
230 PRK14239 phosphate transporter 100.0 1.7E-32 3.6E-37 305.3 24.0 204 660-882 5-216 (252)
231 PRK14262 phosphate ABC transpo 100.0 1.6E-32 3.5E-37 304.8 23.8 203 661-882 4-214 (250)
232 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.3E-32 2.8E-37 299.3 22.4 185 678-882 27-211 (224)
233 PRK13642 cbiO cobalt transport 100.0 1.2E-32 2.5E-37 309.6 22.7 201 660-882 4-209 (277)
234 COG4175 ProV ABC-type proline/ 100.0 2.2E-33 4.8E-38 295.8 15.5 188 684-882 39-234 (386)
235 PRK13541 cytochrome c biogenes 100.0 2.1E-32 4.5E-37 291.6 22.8 183 661-873 2-184 (195)
236 PRK14244 phosphate ABC transpo 100.0 1.9E-32 4.2E-37 304.3 23.4 204 661-882 6-217 (251)
237 PRK14253 phosphate ABC transpo 100.0 1.9E-32 4.2E-37 304.1 23.3 204 660-882 3-213 (249)
238 PRK10762 D-ribose transporter 100.0 1.2E-32 2.6E-37 336.1 23.6 201 661-882 5-210 (501)
239 PRK15056 manganese/iron transp 100.0 1.5E-32 3.2E-37 308.2 22.3 203 660-882 6-211 (272)
240 PRK14236 phosphate transporter 100.0 3.3E-32 7.2E-37 305.3 25.1 204 660-882 25-236 (272)
241 COG4619 ABC-type uncharacteriz 100.0 8E-34 1.7E-38 271.8 10.1 188 682-882 12-203 (223)
242 PRK14254 phosphate ABC transpo 100.0 4.1E-32 9E-37 305.6 25.6 198 660-882 39-248 (285)
243 PRK14249 phosphate ABC transpo 100.0 2.9E-32 6.4E-37 302.8 24.0 204 660-882 4-215 (251)
244 PRK14271 phosphate ABC transpo 100.0 2.9E-32 6.3E-37 305.6 24.1 204 660-882 21-231 (276)
245 cd03229 ABC_Class3 This class 100.0 1.2E-32 2.6E-37 288.7 19.4 163 662-882 2-170 (178)
246 PRK14258 phosphate ABC transpo 100.0 3.7E-32 7.9E-37 303.3 24.5 205 660-882 7-220 (261)
247 PRK14272 phosphate ABC transpo 100.0 3.8E-32 8.3E-37 302.4 24.3 201 660-882 4-216 (252)
248 TIGR02770 nickel_nikD nickel i 100.0 1.5E-32 3.3E-37 300.7 20.5 186 688-882 1-195 (230)
249 PRK14261 phosphate ABC transpo 100.0 3.5E-32 7.7E-37 302.5 23.8 204 660-882 6-217 (253)
250 PRK14263 phosphate ABC transpo 100.0 4.6E-32 1E-36 301.7 24.3 204 658-882 6-217 (261)
251 PRK10418 nikD nickel transport 100.0 2.9E-32 6.2E-37 303.1 22.6 198 660-882 4-210 (254)
252 PRK14257 phosphate ABC transpo 100.0 4.8E-32 1E-36 309.3 25.0 205 660-882 80-293 (329)
253 PRK14251 phosphate ABC transpo 100.0 3.8E-32 8.3E-37 302.1 23.6 200 660-882 4-215 (251)
254 PRK11701 phnK phosphonate C-P 100.0 3.8E-32 8.1E-37 303.1 23.4 200 660-882 6-221 (258)
255 PRK11174 cysteine/glutathione 100.0 7.5E-33 1.6E-37 345.9 19.7 195 659-882 348-552 (588)
256 PRK09700 D-allose transporter 100.0 2.1E-32 4.6E-37 335.1 23.0 202 660-882 5-214 (510)
257 PRK14248 phosphate ABC transpo 100.0 3.8E-32 8.2E-37 304.6 23.0 200 660-882 21-232 (268)
258 PRK14275 phosphate ABC transpo 100.0 4.6E-32 1E-36 305.6 23.8 200 660-882 39-250 (286)
259 COG4987 CydC ABC-type transpor 100.0 3E-33 6.5E-38 315.7 13.5 196 660-882 336-541 (573)
260 PRK14255 phosphate ABC transpo 100.0 8.2E-32 1.8E-36 299.6 24.9 204 660-882 5-216 (252)
261 COG4161 ArtP ABC-type arginine 100.0 8.5E-33 1.8E-37 262.3 14.3 182 683-873 12-202 (242)
262 TIGR02633 xylG D-xylose ABC tr 100.0 3.6E-32 7.9E-37 332.5 24.1 203 661-882 2-210 (500)
263 PRK11288 araG L-arabinose tran 100.0 3.3E-32 7.1E-37 332.4 23.6 202 660-882 4-209 (501)
264 PRK15439 autoinducer 2 ABC tra 100.0 4.1E-32 9E-37 331.5 23.8 195 660-882 11-209 (510)
265 cd03215 ABC_Carb_Monos_II This 100.0 3.3E-32 7.2E-37 286.5 19.8 152 688-882 15-173 (182)
266 PRK14265 phosphate ABC transpo 100.0 7E-32 1.5E-36 302.5 23.7 203 659-882 19-229 (274)
267 PRK10419 nikE nickel transport 100.0 7.5E-32 1.6E-36 301.5 23.8 208 661-882 4-221 (268)
268 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-32 3.2E-37 299.3 17.5 196 661-882 3-207 (220)
269 PRK14238 phosphate transporter 100.0 6E-32 1.3E-36 302.8 22.9 200 660-882 24-235 (271)
270 PRK14243 phosphate transporter 100.0 5.7E-32 1.2E-36 302.0 22.6 202 660-882 10-219 (264)
271 cd03252 ABCC_Hemolysin The ABC 100.0 1.3E-32 2.8E-37 303.2 16.2 195 661-882 1-205 (237)
272 PRK14246 phosphate ABC transpo 100.0 1E-31 2.2E-36 298.2 23.3 201 660-882 10-221 (257)
273 CHL00131 ycf16 sulfate ABC tra 100.0 1.5E-31 3.3E-36 297.6 24.5 198 660-874 7-213 (252)
274 PRK14266 phosphate ABC transpo 100.0 1.2E-31 2.5E-36 298.0 23.0 204 660-882 3-214 (250)
275 TIGR02323 CP_lyasePhnK phospho 100.0 1.1E-31 2.4E-36 298.7 22.9 200 660-882 3-218 (253)
276 cd03246 ABCC_Protease_Secretio 100.0 4.4E-32 9.5E-37 283.1 18.3 160 662-882 2-164 (173)
277 PRK09544 znuC high-affinity zi 100.0 7.1E-32 1.5E-36 297.8 20.9 184 660-882 4-190 (251)
278 PRK10982 galactose/methyl gala 100.0 5E-32 1.1E-36 330.2 21.7 190 685-882 10-203 (491)
279 cd03248 ABCC_TAP TAP, the Tran 100.0 1.8E-32 3.9E-37 299.8 15.9 199 660-882 11-217 (226)
280 cd03251 ABCC_MsbA MsbA is an e 100.0 2.6E-32 5.7E-37 300.3 16.6 194 662-882 2-205 (234)
281 PRK11176 lipid transporter ATP 100.0 4.5E-32 9.8E-37 338.7 20.8 198 659-882 340-547 (582)
282 PRK14264 phosphate ABC transpo 100.0 2.2E-31 4.7E-36 302.7 24.2 206 660-882 45-268 (305)
283 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.4E-32 7.4E-37 345.2 19.6 194 659-882 450-653 (686)
284 PRK09580 sufC cysteine desulfu 100.0 1.8E-31 3.9E-36 296.4 22.7 196 661-873 2-206 (248)
285 PRK10790 putative multidrug tr 100.0 8.5E-32 1.8E-36 336.4 22.5 195 659-882 339-543 (592)
286 PRK03695 vitamin B12-transport 100.0 1.1E-31 2.4E-36 296.8 20.7 182 688-882 11-202 (248)
287 COG1129 MglA ABC-type sugar tr 100.0 7.7E-32 1.7E-36 310.5 20.0 202 660-882 8-214 (500)
288 PRK14252 phosphate ABC transpo 100.0 3E-31 6.6E-36 296.8 24.4 205 659-882 15-229 (265)
289 PRK11160 cysteine/glutathione 100.0 6.1E-32 1.3E-36 334.8 20.7 197 659-882 337-542 (574)
290 COG1123 ATPase components of v 100.0 2E-31 4.3E-36 309.0 23.4 208 660-882 5-224 (539)
291 cd03254 ABCC_Glucan_exporter_l 100.0 3.1E-32 6.7E-37 298.7 15.9 196 660-882 2-206 (229)
292 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.6E-32 7.7E-37 299.9 16.2 195 662-882 2-206 (238)
293 TIGR02857 CydD thiol reductant 100.0 5.4E-32 1.2E-36 333.9 18.5 196 660-882 320-525 (529)
294 TIGR03269 met_CoM_red_A2 methy 100.0 2.6E-31 5.6E-36 326.3 23.9 198 661-882 1-238 (520)
295 PRK13545 tagH teichoic acids e 100.0 3.7E-31 8.1E-36 308.0 23.8 176 686-882 37-212 (549)
296 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.5E-31 3.3E-36 297.3 19.8 195 660-882 2-205 (275)
297 COG4136 ABC-type uncharacteriz 100.0 7E-32 1.5E-36 253.3 13.9 181 684-873 13-196 (213)
298 COG4618 ArpD ABC-type protease 100.0 7.3E-32 1.6E-36 301.2 16.6 209 650-882 324-540 (580)
299 PRK13546 teichoic acids export 100.0 8.8E-31 1.9E-35 290.5 25.0 203 659-882 3-212 (264)
300 COG1132 MdlB ABC-type multidru 100.0 5E-32 1.1E-36 336.5 16.7 196 659-882 327-532 (567)
301 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.4E-31 5.3E-36 284.2 19.5 169 661-882 1-174 (200)
302 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 8.8E-32 1.9E-36 343.1 18.9 195 659-882 476-680 (710)
303 cd03247 ABCC_cytochrome_bd The 100.0 1.6E-31 3.4E-36 280.5 17.2 163 661-882 1-165 (178)
304 cd03253 ABCC_ATM1_transporter 100.0 1E-31 2.2E-36 296.0 16.5 193 662-882 2-204 (236)
305 COG1119 ModF ABC-type molybden 100.0 1.5E-31 3.1E-36 275.9 16.4 204 658-882 29-242 (257)
306 PRK10261 glutathione transport 100.0 5.2E-31 1.1E-35 328.0 24.5 204 660-882 12-238 (623)
307 cd03223 ABCD_peroxisomal_ALDP 100.0 4.5E-31 9.7E-36 272.9 19.6 156 661-882 1-156 (166)
308 TIGR01193 bacteriocin_ABC ABC- 100.0 1.2E-31 2.5E-36 341.4 18.6 196 659-882 472-677 (708)
309 COG4604 CeuD ABC-type enteroch 100.0 2.8E-32 6.1E-37 268.5 9.8 188 678-873 6-197 (252)
310 PRK15134 microcin C ABC transp 100.0 6.8E-31 1.5E-35 323.0 24.1 206 660-882 5-226 (529)
311 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-31 2.5E-36 339.8 17.7 195 660-882 478-682 (711)
312 COG3845 ABC-type uncharacteriz 100.0 2.8E-31 6.1E-36 298.1 18.6 202 660-882 4-209 (501)
313 TIGR03375 type_I_sec_LssB type 100.0 1.6E-31 3.5E-36 339.4 18.9 197 659-882 462-668 (694)
314 TIGR01842 type_I_sec_PrtD type 100.0 2.4E-31 5.1E-36 328.4 19.7 198 659-882 315-522 (544)
315 cd03244 ABCC_MRP_domain2 Domai 100.0 2.3E-31 4.9E-36 290.2 17.2 195 660-882 2-206 (221)
316 PRK00349 uvrA excinuclease ABC 100.0 5.1E-30 1.1E-34 322.5 31.7 106 104-218 469-583 (943)
317 cd03290 ABCC_SUR1_N The SUR do 100.0 5E-31 1.1E-35 286.6 19.5 181 686-882 14-210 (218)
318 PRK13657 cyclic beta-1,2-gluca 100.0 2.7E-31 5.8E-36 331.4 19.8 195 660-882 334-538 (588)
319 cd03214 ABC_Iron-Siderophores_ 100.0 2.4E-31 5.1E-36 279.5 16.1 152 686-882 12-167 (180)
320 cd03250 ABCC_MRP_domain1 Domai 100.0 4.3E-31 9.4E-36 283.9 17.9 179 661-873 1-189 (204)
321 KOG0056 Heavy metal exporter H 100.0 8.6E-32 1.9E-36 295.6 12.5 197 656-874 533-735 (790)
322 PRK00635 excinuclease ABC subu 100.0 9.5E-30 2.1E-34 331.4 33.4 118 757-882 759-880 (1809)
323 TIGR02203 MsbA_lipidA lipid A 100.0 3.9E-31 8.3E-36 330.1 19.8 197 660-882 330-536 (571)
324 cd03228 ABCC_MRP_Like The MRP 100.0 5.2E-31 1.1E-35 274.4 17.6 159 662-882 2-163 (171)
325 cd03216 ABC_Carb_Monos_I This 100.0 1E-30 2.3E-35 269.3 19.2 147 661-882 1-151 (163)
326 KOG0058 Peptide exporter, ABC 100.0 5.4E-32 1.2E-36 317.0 10.7 169 13-220 520-691 (716)
327 TIGR03771 anch_rpt_ABC anchore 100.0 6.4E-31 1.4E-35 286.1 18.2 179 694-882 1-182 (223)
328 COG4133 CcmA ABC-type transpor 100.0 6.7E-31 1.5E-35 258.7 16.2 184 677-873 6-191 (209)
329 COG0396 sufC Cysteine desulfur 100.0 2.6E-30 5.7E-35 262.9 20.5 198 660-873 3-205 (251)
330 TIGR01846 type_I_sec_HlyB type 100.0 8.6E-31 1.9E-35 332.4 19.9 197 659-882 454-660 (694)
331 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.6E-30 3.5E-35 280.2 18.6 184 660-882 6-192 (207)
332 COG4148 ModC ABC-type molybdat 100.0 2.1E-31 4.6E-36 275.9 11.2 175 691-882 16-198 (352)
333 PRK10789 putative multidrug tr 100.0 7.7E-31 1.7E-35 325.0 18.4 196 660-882 313-518 (569)
334 TIGR02204 MsbA_rel ABC transpo 100.0 7E-31 1.5E-35 327.9 17.8 197 660-882 337-543 (576)
335 PRK10938 putative molybdenum t 100.0 1.1E-30 2.4E-35 318.5 19.0 190 661-882 4-204 (490)
336 TIGR01192 chvA glucan exporter 100.0 1.2E-30 2.7E-35 323.5 18.9 195 660-882 334-538 (585)
337 PRK10535 macrolide transporter 100.0 2.1E-29 4.6E-34 314.6 29.1 202 660-882 4-212 (648)
338 cd03288 ABCC_SUR2 The SUR doma 100.0 1.5E-30 3.3E-35 289.6 16.6 196 659-882 18-223 (257)
339 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.1E-30 9E-35 282.3 19.4 171 688-882 9-185 (246)
340 PRK10522 multidrug transporter 100.0 3.6E-30 7.8E-35 317.8 20.7 193 660-882 322-518 (547)
341 TIGR00630 uvra excinuclease AB 100.0 6.8E-29 1.5E-33 311.8 32.1 103 108-218 470-581 (924)
342 COG1135 AbcC ABC-type metal io 100.0 1.3E-30 2.8E-35 276.2 12.7 182 13-242 58-245 (339)
343 TIGR01187 potA spermidine/putr 100.0 6.8E-30 1.5E-34 292.6 19.0 168 704-882 1-170 (325)
344 KOG0059 Lipid exporter ABCA1 a 100.0 3.2E-28 6.9E-33 311.7 34.8 184 688-882 580-767 (885)
345 COG4674 Uncharacterized ABC-ty 100.0 4.2E-30 9.1E-35 252.8 13.4 192 660-873 5-207 (249)
346 COG1126 GlnQ ABC-type polar am 100.0 3.7E-30 7.9E-35 259.5 12.4 180 13-240 54-237 (240)
347 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.7E-29 8.1E-34 279.3 21.4 184 657-882 36-227 (282)
348 TIGR01194 cyc_pep_trnsptr cycl 100.0 2E-29 4.3E-34 311.2 20.2 199 659-882 336-539 (555)
349 COG1131 CcmA ABC-type multidru 100.0 1.1E-29 2.5E-34 285.0 15.2 181 1-224 48-230 (293)
350 PTZ00265 multidrug resistance 100.0 1.3E-29 2.9E-34 337.6 17.6 207 660-882 382-648 (1466)
351 PRK15064 ABC transporter ATP-b 100.0 5.5E-29 1.2E-33 306.1 21.2 190 661-882 2-221 (530)
352 PRK11819 putative ABC transpor 100.0 1.1E-28 2.3E-33 304.4 22.1 191 660-882 6-229 (556)
353 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.8E-29 1E-33 274.9 16.9 178 687-882 15-208 (255)
354 PRK15177 Vi polysaccharide exp 100.0 1.1E-28 2.4E-33 265.8 17.7 171 687-882 1-172 (213)
355 TIGR00954 3a01203 Peroxysomal 100.0 6.8E-29 1.5E-33 310.2 18.3 193 660-882 451-647 (659)
356 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.2E-28 4.8E-33 246.1 18.3 135 662-882 2-136 (144)
357 COG1125 OpuBA ABC-type proline 100.0 5.5E-29 1.2E-33 255.5 13.2 168 13-220 53-225 (309)
358 cd03238 ABC_UvrA The excision 100.0 1.9E-28 4E-33 252.9 17.2 148 685-882 7-157 (176)
359 cd03222 ABC_RNaseL_inhibitor T 100.0 1.5E-28 3.3E-33 253.8 16.3 130 684-882 11-141 (177)
360 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-28 5E-33 301.5 20.9 191 660-882 4-227 (552)
361 KOG0927 Predicted transporter 100.0 6.9E-28 1.5E-32 271.1 21.5 177 660-873 389-567 (614)
362 COG1101 PhnK ABC-type uncharac 100.0 9.1E-29 2E-33 247.6 12.3 183 684-873 17-210 (263)
363 COG4608 AppF ABC-type oligopep 100.0 4.6E-28 1E-32 256.5 18.0 174 660-882 4-179 (268)
364 KOG0057 Mitochondrial Fe/S clu 100.0 6E-29 1.3E-33 281.1 11.9 169 13-220 403-574 (591)
365 COG5265 ATM1 ABC-type transpor 100.0 4.5E-29 9.8E-34 272.8 10.3 195 656-874 258-460 (497)
366 COG4586 ABC-type uncharacteriz 100.0 1.3E-28 2.8E-33 255.2 12.7 186 686-882 37-226 (325)
367 COG4172 ABC-type uncharacteriz 100.0 9.5E-28 2.1E-32 260.2 18.8 209 660-882 6-227 (534)
368 COG3839 MalK ABC-type sugar tr 100.0 2.3E-28 4.9E-33 271.4 12.9 176 1-219 46-222 (338)
369 COG2274 SunT ABC-type bacterio 100.0 2E-28 4.4E-33 300.4 12.7 178 2-221 517-697 (709)
370 COG4555 NatA ABC-type Na+ tran 99.9 2.8E-28 6.1E-33 241.7 10.3 176 1-220 45-222 (245)
371 COG1118 CysA ABC-type sulfate/ 99.9 6.2E-28 1.3E-32 255.1 12.9 177 1-218 45-225 (345)
372 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.4E-27 7.5E-32 242.4 16.9 135 686-882 12-149 (157)
373 COG1127 Ttg2A ABC-type transpo 99.9 9E-28 2E-32 246.2 12.4 178 1-220 51-235 (263)
374 PRK13409 putative ATPase RIL; 99.9 1.6E-27 3.5E-32 292.0 16.0 180 681-882 81-280 (590)
375 PRK10636 putative ABC transpor 99.9 5.7E-27 1.2E-31 291.9 20.6 189 661-882 2-215 (638)
376 PLN03232 ABC transporter C fam 99.9 2.9E-27 6.3E-32 318.8 18.7 187 660-882 614-808 (1495)
377 PLN03130 ABC transporter C fam 99.9 4.9E-27 1.1E-31 316.3 19.5 186 660-882 614-808 (1622)
378 COG3638 ABC-type phosphate/pho 99.9 2E-27 4.3E-32 243.0 11.8 185 1-221 47-238 (258)
379 COG1116 TauB ABC-type nitrate/ 99.9 1.8E-27 3.9E-32 248.6 11.7 162 1-207 46-207 (248)
380 PF00005 ABC_tran: ABC transpo 99.9 4E-27 8.6E-32 236.5 13.3 134 689-841 1-137 (137)
381 COG3842 PotA ABC-type spermidi 99.9 1.5E-27 3.1E-32 266.5 11.0 190 1-240 48-238 (352)
382 COG1134 TagH ABC-type polysacc 99.9 3.7E-26 8E-31 236.7 20.4 203 660-882 3-216 (249)
383 COG4778 PhnL ABC-type phosphon 99.9 5.4E-27 1.2E-31 225.3 13.0 199 660-873 4-213 (235)
384 KOG0056 Heavy metal exporter H 99.9 4.6E-28 1E-32 266.4 6.0 169 13-220 590-761 (790)
385 COG5265 ATM1 ABC-type transpor 99.9 1.2E-27 2.7E-32 261.6 8.0 169 13-220 315-486 (497)
386 PRK11147 ABC transporter ATPas 99.9 3.3E-26 7.1E-31 286.1 21.6 187 661-882 4-222 (635)
387 COG1120 FepC ABC-type cobalami 99.9 2.8E-27 6.2E-32 252.9 9.8 180 1-219 45-227 (258)
388 COG0488 Uup ATPase components 99.9 2E-26 4.4E-31 274.0 17.9 181 660-872 3-210 (530)
389 PRK11174 cysteine/glutathione 99.9 4.5E-27 9.8E-32 293.9 12.6 176 2-220 394-572 (588)
390 COG1117 PstB ABC-type phosphat 99.9 5.7E-27 1.2E-31 234.9 10.6 183 10-239 61-248 (253)
391 TIGR01186 proV glycine betaine 99.9 1.9E-26 4.2E-31 264.7 15.2 176 1-219 36-218 (363)
392 COG4988 CydD ABC-type transpor 99.9 7.7E-27 1.7E-31 269.2 11.9 177 1-220 364-543 (559)
393 PRK11650 ugpC glycerol-3-phosp 99.9 1.9E-26 4.1E-31 265.9 15.0 176 1-219 47-223 (356)
394 COG4107 PhnK ABC-type phosphon 99.9 2.5E-26 5.3E-31 221.2 13.1 178 684-873 17-213 (258)
395 TIGR03265 PhnT2 putative 2-ami 99.9 1.8E-26 3.8E-31 265.9 14.5 176 1-219 47-223 (353)
396 COG3840 ThiQ ABC-type thiamine 99.9 1.4E-26 3.1E-31 225.6 11.4 176 1-219 42-218 (231)
397 COG1132 MdlB ABC-type multidru 99.9 6.4E-27 1.4E-31 290.8 11.1 168 14-220 382-552 (567)
398 TIGR02314 ABC_MetN D-methionin 99.9 2.7E-26 5.8E-31 262.3 14.9 176 1-219 48-229 (343)
399 PRK11432 fbpC ferric transport 99.9 2.6E-26 5.5E-31 264.0 14.6 176 1-219 49-225 (351)
400 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 3.7E-26 8.1E-31 242.8 14.1 177 1-219 47-226 (254)
401 PRK13537 nodulation ABC transp 99.9 3.4E-26 7.4E-31 259.8 14.7 176 1-220 50-227 (306)
402 TIGR03258 PhnT 2-aminoethylpho 99.9 3.5E-26 7.7E-31 263.6 14.9 179 1-219 48-227 (362)
403 PRK09452 potA putrescine/sperm 99.9 4.6E-26 1E-30 263.5 14.5 176 1-219 57-233 (375)
404 TIGR00957 MRP_assoc_pro multi 99.9 1.2E-25 2.6E-30 303.7 19.8 186 660-882 636-830 (1522)
405 PRK11607 potG putrescine trans 99.9 8.6E-26 1.9E-30 261.8 14.7 176 1-219 62-238 (377)
406 PRK10851 sulfate/thiosulfate t 99.9 1.1E-25 2.4E-30 259.3 14.5 180 1-219 45-225 (353)
407 TIGR01188 drrA daunorubicin re 99.9 1E-25 2.2E-30 256.4 13.9 176 1-220 36-213 (302)
408 COG1136 SalX ABC-type antimicr 99.9 1.3E-25 2.9E-30 235.3 13.4 165 1-209 48-220 (226)
409 TIGR01271 CFTR_protein cystic 99.9 4.9E-25 1.1E-29 296.8 21.9 170 686-882 439-616 (1490)
410 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1E-25 2.2E-30 286.1 12.8 174 2-220 497-673 (686)
411 COG1245 Predicted ATPase, RNas 99.9 2.8E-24 6E-29 236.7 22.1 161 688-873 356-517 (591)
412 cd03261 ABC_Org_Solvent_Resist 99.9 2.5E-25 5.5E-30 244.8 14.1 176 1-218 43-224 (235)
413 COG1122 CbiO ABC-type cobalt t 99.9 2.3E-25 5E-30 239.0 13.4 177 1-220 47-228 (235)
414 PRK13536 nodulation factor exp 99.9 3.3E-25 7E-30 254.1 15.0 176 1-220 84-261 (340)
415 PRK10790 putative multidrug tr 99.9 2.3E-25 5.1E-30 278.5 14.0 177 1-220 384-563 (592)
416 PRK11000 maltose/maltodextrin 99.9 4.2E-25 9.1E-30 256.7 15.1 176 1-219 46-222 (369)
417 COG0410 LivF ABC-type branched 99.9 4.9E-25 1.1E-29 226.2 12.7 176 1-220 46-226 (237)
418 COG1124 DppF ABC-type dipeptid 99.9 5.2E-25 1.1E-29 227.5 12.7 175 2-220 51-231 (252)
419 cd03270 ABC_UvrA_I The excisio 99.9 2.3E-24 5E-29 234.4 18.0 184 685-882 7-207 (226)
420 PRK11153 metN DL-methionine tr 99.9 7E-25 1.5E-29 252.9 14.8 176 1-219 48-229 (343)
421 cd03234 ABCG_White The White s 99.9 9.3E-25 2E-29 238.6 14.9 176 1-213 50-226 (226)
422 COG4167 SapF ABC-type antimicr 99.9 2.7E-24 5.9E-29 208.9 16.3 188 685-882 25-219 (267)
423 TIGR01187 potA spermidine/putr 99.9 9.1E-25 2E-29 250.3 15.2 176 1-219 13-189 (325)
424 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.2E-25 4.7E-30 284.5 10.3 176 1-220 522-700 (710)
425 TIGR03375 type_I_sec_LssB type 99.9 2.9E-25 6.4E-30 282.2 11.3 177 2-220 509-688 (694)
426 PRK11176 lipid transporter ATP 99.9 2.6E-25 5.7E-30 277.9 10.6 179 1-220 386-567 (582)
427 COG4148 ModC ABC-type molybdat 99.9 3.8E-25 8.2E-30 229.7 9.8 171 1-220 41-218 (352)
428 PLN03073 ABC transporter F fam 99.9 4.6E-25 1E-29 274.9 12.6 201 659-882 176-410 (718)
429 PRK10070 glycine betaine trans 99.9 1.3E-24 2.7E-29 252.6 15.1 176 1-219 71-253 (400)
430 TIGR03522 GldA_ABC_ATP gliding 99.9 1.1E-24 2.3E-29 247.7 14.2 175 1-220 45-221 (301)
431 PRK11144 modC molybdate transp 99.9 1.2E-24 2.6E-29 251.8 14.7 170 1-219 41-217 (352)
432 PRK11160 cysteine/glutathione 99.9 6.6E-25 1.4E-29 272.1 13.3 170 2-220 384-562 (574)
433 COG1137 YhbG ABC-type (unclass 99.9 1.6E-24 3.5E-29 214.8 13.2 168 14-220 57-228 (243)
434 TIGR01288 nodI ATP-binding ABC 99.9 1.4E-24 3.1E-29 247.1 14.7 176 1-220 47-224 (303)
435 cd03296 ABC_CysA_sulfate_impor 99.9 1.8E-24 4E-29 238.5 14.8 179 1-218 45-224 (239)
436 PTZ00243 ABC transporter; Prov 99.9 2.5E-24 5.4E-29 290.0 18.8 173 684-882 671-850 (1560)
437 COG4175 ProV ABC-type proline/ 99.9 5.7E-25 1.2E-29 232.5 9.8 168 13-220 80-254 (386)
438 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.9E-24 4.2E-29 241.9 14.7 176 1-219 67-249 (269)
439 cd03278 ABC_SMC_barmotin Barmo 99.9 7.3E-25 1.6E-29 232.3 10.7 160 690-882 14-184 (197)
440 cd03265 ABC_DrrA DrrA is the A 99.9 1.6E-24 3.4E-29 235.9 13.5 175 1-218 43-219 (220)
441 COG4618 ArpD ABC-type protease 99.9 6.6E-25 1.4E-29 245.8 10.6 173 13-223 388-563 (580)
442 TIGR00958 3a01208 Conjugate Tr 99.9 4.9E-25 1.1E-29 279.4 10.0 175 2-220 525-702 (711)
443 TIGR01193 bacteriocin_ABC ABC- 99.9 5.8E-25 1.2E-29 280.2 10.4 177 2-220 518-697 (708)
444 cd03218 ABC_YhbG The ABC trans 99.9 2.6E-24 5.6E-29 236.5 14.1 174 1-218 43-220 (232)
445 cd03219 ABC_Mj1267_LivG_branch 99.9 2.6E-24 5.6E-29 237.1 14.1 184 1-218 43-230 (236)
446 cd03259 ABC_Carb_Solutes_like 99.9 2.2E-24 4.8E-29 233.6 13.2 170 1-213 43-213 (213)
447 TIGR02142 modC_ABC molybdenum 99.9 2.9E-24 6.4E-29 249.1 14.9 174 1-219 40-220 (354)
448 TIGR03415 ABC_choXWV_ATP choli 99.9 3.1E-24 6.6E-29 247.5 14.8 176 1-219 67-253 (382)
449 cd03301 ABC_MalK_N The N-termi 99.9 3.3E-24 7E-29 232.4 14.0 170 1-213 43-213 (213)
450 cd03258 ABC_MetN_methionine_tr 99.9 2.8E-24 6.1E-29 236.3 13.7 175 1-218 48-228 (233)
451 PRK13637 cbiO cobalt transport 99.9 4.1E-24 8.9E-29 241.2 15.3 176 1-219 50-233 (287)
452 cd03293 ABC_NrtD_SsuB_transpor 99.9 3.4E-24 7.3E-29 233.3 13.9 171 1-216 47-219 (220)
453 cd03260 ABC_PstB_phosphate_tra 99.9 2.1E-24 4.6E-29 236.2 12.3 177 1-217 43-226 (227)
454 cd03256 ABC_PhnC_transporter A 99.9 3.7E-24 8E-29 236.8 14.0 184 1-219 44-233 (241)
455 PRK09473 oppD oligopeptide tra 99.9 4.5E-24 9.8E-29 244.3 15.2 183 1-219 59-250 (330)
456 KOG0054 Multidrug resistance-a 99.9 8.5E-24 1.8E-28 269.0 19.0 187 659-882 517-711 (1381)
457 PRK15079 oligopeptide ABC tran 99.9 4.5E-24 9.7E-29 244.1 14.9 178 1-219 64-250 (331)
458 COG0411 LivG ABC-type branched 99.9 5.1E-24 1.1E-28 220.5 13.8 189 1-220 47-239 (250)
459 PRK13634 cbiO cobalt transport 99.9 5.6E-24 1.2E-28 240.5 14.8 175 1-219 50-234 (290)
460 PRK13643 cbiO cobalt transport 99.9 4E-24 8.6E-29 241.4 13.2 191 1-236 49-252 (288)
461 cd03295 ABC_OpuCA_Osmoprotecti 99.9 5.4E-24 1.2E-28 235.2 13.8 176 1-219 44-224 (242)
462 PRK13631 cbiO cobalt transport 99.9 6.6E-24 1.4E-28 241.9 14.7 174 1-219 69-264 (320)
463 PRK14257 phosphate ABC transpo 99.9 5.9E-24 1.3E-28 242.9 14.1 181 1-219 125-312 (329)
464 cd03263 ABC_subfamily_A The AB 99.9 4.5E-24 9.8E-29 232.6 12.6 173 1-218 45-219 (220)
465 cd03269 ABC_putative_ATPase Th 99.9 4.8E-24 1E-28 230.5 12.6 168 1-213 43-210 (210)
466 PRK09536 btuD corrinoid ABC tr 99.9 4.7E-24 1E-28 248.0 13.4 178 1-218 46-226 (402)
467 cd03224 ABC_TM1139_LivF_branch 99.9 6.1E-24 1.3E-28 232.0 13.4 173 1-219 43-220 (222)
468 cd03264 ABC_drug_resistance_li 99.9 4.8E-24 1E-28 230.6 12.5 168 1-213 42-211 (211)
469 cd03268 ABC_BcrA_bacitracin_re 99.9 5.9E-24 1.3E-28 229.4 13.0 165 1-213 43-208 (208)
470 TIGR00960 3a0501s02 Type II (G 99.9 4E-24 8.6E-29 232.2 11.6 165 1-209 46-216 (216)
471 cd03266 ABC_NatA_sodium_export 99.9 4.5E-24 9.8E-29 232.2 12.0 169 1-213 48-218 (218)
472 TIGR00972 3a0107s01c2 phosphat 99.9 8.3E-24 1.8E-28 234.5 14.2 177 1-219 44-231 (247)
473 PRK11629 lolD lipoprotein tran 99.9 1.1E-23 2.3E-28 231.4 14.7 171 1-215 52-229 (233)
474 COG2884 FtsE Predicted ATPase 99.9 7.3E-24 1.6E-28 208.9 11.7 161 13-214 54-220 (223)
475 cd03271 ABC_UvrA_II The excisi 99.9 1.8E-23 3.8E-28 228.9 16.1 180 687-882 9-240 (261)
476 PRK13657 cyclic beta-1,2-gluca 99.9 5.1E-24 1.1E-28 266.0 13.3 178 1-220 378-558 (588)
477 PRK13647 cbiO cobalt transport 99.9 1.3E-23 2.8E-28 235.7 15.2 174 1-218 48-225 (274)
478 PRK11264 putative amino-acid A 99.9 1E-23 2.2E-28 234.4 14.1 175 1-218 46-231 (250)
479 cd03233 ABC_PDR_domain1 The pl 99.9 1.1E-23 2.5E-28 225.3 13.9 151 1-213 50-202 (202)
480 PRK11831 putative ABC transpor 99.9 1.2E-23 2.6E-28 235.7 14.6 177 1-219 50-232 (269)
481 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 6.1E-24 1.3E-28 231.2 11.8 165 1-209 47-218 (218)
482 TIGR01846 type_I_sec_HlyB type 99.9 3.2E-24 7E-29 272.5 11.0 178 1-220 500-680 (694)
483 KOG0059 Lipid exporter ABCA1 a 99.9 5.4E-24 1.2E-28 272.9 13.0 181 2-227 609-793 (885)
484 TIGR02315 ABC_phnC phosphonate 99.9 8E-24 1.7E-28 234.4 12.4 183 1-218 45-233 (243)
485 cd03299 ABC_ModC_like Archeal 99.9 1.6E-23 3.4E-28 230.1 14.7 176 1-219 42-218 (235)
486 TIGR02203 MsbA_lipidA lipid A 99.9 3.2E-24 7E-29 267.9 10.2 178 2-220 376-556 (571)
487 TIGR01842 type_I_sec_PrtD type 99.9 5.7E-24 1.2E-28 262.8 12.2 179 1-220 361-542 (544)
488 PRK09493 glnQ glutamine ABC tr 99.9 1.3E-23 2.8E-28 232.0 13.6 175 1-219 44-224 (240)
489 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.3E-23 2.8E-28 227.3 13.2 170 1-213 41-211 (211)
490 TIGR01184 ntrCD nitrate transp 99.9 1.3E-23 2.9E-28 229.7 13.4 175 1-218 28-202 (230)
491 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.9E-23 4.2E-28 229.8 14.6 176 1-220 44-221 (236)
492 PRK13650 cbiO cobalt transport 99.9 1.8E-23 4E-28 235.1 14.4 175 1-219 50-228 (279)
493 COG0444 DppD ABC-type dipeptid 99.9 2.5E-23 5.4E-28 225.3 14.7 183 2-219 49-242 (316)
494 PRK13646 cbiO cobalt transport 99.9 1.2E-23 2.5E-28 237.6 12.7 175 1-219 50-234 (286)
495 PRK13635 cbiO cobalt transport 99.9 2E-23 4.3E-28 234.7 14.4 175 1-219 50-228 (279)
496 PRK11308 dppF dipeptide transp 99.9 2.1E-23 4.5E-28 238.5 14.8 177 1-219 58-243 (327)
497 PRK13636 cbiO cobalt transport 99.9 1.8E-23 4E-28 235.6 14.1 177 1-220 49-231 (283)
498 TIGR02770 nickel_nikD nickel i 99.9 2E-23 4.2E-28 228.7 13.8 179 1-219 29-214 (230)
499 PRK11022 dppD dipeptide transp 99.9 2.9E-23 6.3E-28 237.5 15.6 183 1-219 50-242 (326)
500 cd03226 ABC_cobalt_CbiO_domain 99.9 1.3E-23 2.8E-28 226.1 12.0 162 1-210 43-205 (205)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-196 Score=1775.19 Aligned_cols=1166 Identities=52% Similarity=0.903 Sum_probs=1066.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|.+++....+|+|++||++.++...++.++|++|+|+|+|.|||||||.|+++|++++.||+ +.+++|++.
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 5899999998888899999999999998888999999999999999999999999999999999987 455555541
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
+++|.+++++||.+|+||+||++++||+|||||||||+|++++++++++|+||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2589999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
||.|+.+++++||++++..+.|.+++|+||+++++++||+|++|++|+++|+||.+++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCCCCCCcccccCCcccCHHHHHHHHHHHHHH
Q 000907 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACFSREHL 320 (1230)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~~ 320 (1230)
++++..++.+.+.....++...+.+|+.+.|.+++.+.++..+++.+.++.+.++.......+..+.|+|++.|+.|.+.
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99998777777777666777777899999999999999999999999998888888888899999999999999999999
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHhhhCCC
Q 000907 321 LMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRF 400 (1230)
Q Consensus 321 ~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~ 400 (1230)
.++||...+...+.+.+++++++|++|++.+. .+..+...+.|++||.+.+.+++++++++.+++++||++|||+..+
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999873 4444566679999999999999999999999999999999999999
Q ss_pred CcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000907 401 YPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480 (1230)
Q Consensus 401 y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~ 480 (1230)
|++|++.++..++++|..++...+|.+|+||++|+.+++++||.++++.++++.+++++|++++++++++.+|+.++++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCcccccCCC---------------CCCcchHHHHhh
Q 000907 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPN---------------KTKPLGIEVLDS 545 (1230)
Q Consensus 481 ~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~~~~~~~---------------~~~~~g~~~l~~ 545 (1230)
++++.+++||+||..+||+||+|++|++|+.|++++++.|||++..|.|.+.+ ...+.|.++++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 99999999999999999999999999999999999999999999999887322 124568888888
Q ss_pred cCcc-----cCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCccccccccCCCCccc
Q 000907 546 RGFF-----TDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHIT 620 (1230)
Q Consensus 546 ~~~~-----~~~~~~w~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1230)
+++. ....|+|+++++++++.++|.+...+++.|+++....+.....++............
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~-------------- 755 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGS-------------- 755 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhccc--------------
Confidence 8777 667899999999999999999999999999998877766655544322211000000
Q ss_pred cccchhhhhhccCCCccccccccCCCCCCCCcccCCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCe
Q 000907 621 RSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGV 700 (1230)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 700 (1230)
.... +...+....+++++..|..+..++++||.+.++++-+++..+ +++++|+|||+.++||.
T Consensus 756 ------------~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~ 818 (1391)
T KOG0065|consen 756 ------------SSEI--EKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGV 818 (1391)
T ss_pred ------------cccc--cccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCc
Confidence 0000 000000000234556677788889999998888876665544 67889999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCC
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 780 (1230)
Q Consensus 701 ~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 780 (1230)
++||||+||||||||||+|+||.+.|.++|+|.+||.|.+++.++|.+|||.|+|.|.|.+||+|.|.|+|.||+|.+.+
T Consensus 819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~ 898 (1391)
T KOG0065|consen 819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVS 898 (1391)
T ss_pred eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000907 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAVVMRTVRNTV 859 (1230)
Q Consensus 781 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p-~illlDEPtsgLD~~~~~~i~~~l~~~~ 859 (1230)
.+++.++||++++.++|++++|.+||.|+ +|||.+|||||+||.+|+.|| .||||||||||||+.++..|++.+|+++
T Consensus 899 ~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla 977 (1391)
T KOG0065|consen 899 DEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA 977 (1391)
T ss_pred HHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999 8999999999999999999999999999
Q ss_pred hCCCEEEEEecCCCHHHHHHHhc----------------------------CCCCCccCCCCCCCCccccccCCchhhhh
Q 000907 860 DTGRTVVCTIHQPSIDIFEAFDA----------------------------GIPGVSKIRDGYNPATWMLEVTAPSQEIA 911 (1230)
Q Consensus 860 ~~g~tvi~~~H~~~~~i~~~fd~----------------------------~~~~~~~~~~~~npad~~l~~~~~~~~~~ 911 (1230)
++|+||+||+||||.+||+.||+ ..+|. .|++..|||||++|+++...+.+
T Consensus 978 ~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~ 1056 (1391)
T KOG0065|consen 978 DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEAS 1056 (1391)
T ss_pred hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccc
Confidence 99999999999999999999998 11223 46666699999999999887777
Q ss_pred hhhcHHHHHHhhHHHHHHHHHHHHhcCCCCC-CccccccCCCCchhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 000907 912 LGVDFAAIYKSSELYRINKALIQELSKPAPG-SKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISL 990 (1230)
Q Consensus 912 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l 990 (1230)
...||++.|++|++++++++.++++++++++ ..+..+.++|+.|+|.|++.++||+++.+||+|.++++|++..++.|+
T Consensus 1057 ~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl 1136 (1391)
T KOG0065|consen 1057 LSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGL 1136 (1391)
T ss_pred cCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999988887 666677788999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHH
Q 000907 991 IFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFV 1070 (1230)
Q Consensus 991 ~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~ 1070 (1230)
++|++||++|+ ++++++|.+|++|+++++.+..+.....+.+..||.+++||+++|+||+.+|++|++++|+|+.++
T Consensus 1137 ~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~ 1213 (1391)
T KOG0065|consen 1137 FIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLL 1213 (1391)
T ss_pred hheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999995 689999999999999999888877777787888999999999999999999999999999999999
Q ss_pred HHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccCCCCCchh
Q 000907 1071 QAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVW 1150 (1230)
Q Consensus 1071 ~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~ 1150 (1230)
++++|.+++|+|+||.+++.+|++|++.+++..++.+.+|+++.+++||.++|+.+.+++++++.+|||+++|++.||.|
T Consensus 1214 ~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~f 1293 (1391)
T KOG0065|consen 1214 QSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKF 1293 (1391)
T ss_pred HHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcHHHHHHHHHHHHhhCCCccccC----------CCCcHHHHHHhhhC----CCccchhHHHHHHHHHHHHHHH
Q 000907 1151 WRWSYWANPIAWTLYGFFASQFGDVQDRLE----------SGETVKQFLRSYYG----FKHDFLGAVAAVVFVLPSLFAF 1216 (1230)
Q Consensus 1151 ~~w~~~~sp~~y~~~~l~~nef~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~ 1216 (1230)
|+|+||+||+.|.+++++..+++|.+..|. +|.++|+|+..++| +.++.......+.++|.+++.+
T Consensus 1294 W~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~ 1373 (1391)
T KOG0065|consen 1294 WIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAF 1373 (1391)
T ss_pred eeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHH
Confidence 999999999999999999999999988874 24589999999999 7777766777788899999999
Q ss_pred HHHHHHHhhccccC
Q 000907 1217 VFALGIRVLNFQKR 1230 (1230)
Q Consensus 1217 ~~~~~l~~~~~~~r 1230 (1230)
++.+..++.+++||
T Consensus 1374 l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1374 LAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999886
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-187 Score=1831.71 Aligned_cols=1227 Identities=60% Similarity=1.064 Sum_probs=1052.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|++.+..+++|+|++||++.++...++.++||+|+|.|++++||+|||.|++++++.+.+++.+.+.+++++..+
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 68999998776678999999999987655578899999999999999999999999999876666665556666666655
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
..|..+++..+++...++.+.+..+|.+|+.+||++|+||.||++..|||||||||||+||++|+++|+++|||||||||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 55666666666665555555667789999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
|+.++.++++.|+++++..|+|+++++|||+++++++||+|++|++|+++|+||.+++.+||+++||+||++.|||||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999987678899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCCCCCCcccccCCcccCHHHHHHHHHHHHHH
Q 000907 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACFSREHL 320 (1230)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~~ 320 (1230)
+++++.++++.+.....|++..+.+++.++|++++.++.+.++++.+.++...++......++..++++|++.|++|+++
T Consensus 448 ~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~ 527 (1470)
T PLN03140 448 EVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWL 527 (1470)
T ss_pred HhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 99998666555443344445567899999999998887777666554443333333333456888899999999999999
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHhhhCCC
Q 000907 321 LMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRF 400 (1230)
Q Consensus 321 ~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~ 400 (1230)
.++||+..+..++++.+++|+++|++|++++.+..+..+...+.|++||.+.+.++.++.+++.++.+||+|+|||+.++
T Consensus 528 ~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~ 607 (1470)
T PLN03140 528 LMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLF 607 (1470)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccC
Confidence 99999999999999999999999999999976554444556678999999999999999999999999999999999999
Q ss_pred CcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000907 401 YPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480 (1230)
Q Consensus 401 y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~ 480 (1230)
|++++|+++++++++|+.++++++|++|+|||+|+++++++||.++++.+++++++++++++++++++++.+|+.+++++
T Consensus 608 Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~ 687 (1470)
T PLN03140 608 HPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALV 687 (1470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCccccc-CCCCCCcchHHHHhhcCcccCCcchhHHH
Q 000907 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKI-LPNKTKPLGIEVLDSRGFFTDAYWYWLGV 559 (1230)
Q Consensus 481 ~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~~~~-~~~~~~~~g~~~l~~~~~~~~~~~~w~~~ 559 (1230)
++++++|+||+++.++||+||+|++|+||+.|++++++.|||.+..|.+. +.+...+.|.++|+.+++..++.|+|+++
T Consensus 688 ~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~ 767 (1470)
T PLN03140 688 LLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGV 767 (1470)
T ss_pred HHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhH
Confidence 99999999999999999999999999999999999999999988776532 22334678999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCccccccccCCCC--ccccccchhhhhhccCCCcc
Q 000907 560 GALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSS--HITRSESRDYVRRRNSSSQS 637 (1230)
Q Consensus 560 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 637 (1230)
+++++++++|.+++++++.+.++....+.....+................. ...... ......... .........
T Consensus 768 ~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~ 844 (1470)
T PLN03140 768 GALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLS-SADGNNTREVAIQRMSN--PEGLSKNRD 844 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccc-ccccccccccccccccc--ccccccccc
Confidence 999999999999999999998865544333221110000000000000000 000000 000000000 000000000
Q ss_pred ccccccCCCCCCCCcccCCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 000907 638 RETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMD 717 (1230)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~ 717 (1230)
............+++.+|..|..++|+|++|.++.+.+.++.+...+++.+|+|||++++|||++||+||||||||||||
T Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~ 924 (1470)
T PLN03140 845 SSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMD 924 (1470)
T ss_pred cccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHH
Confidence 00000001122345566788899999999999987765555555556678999999999999999999999999999999
Q ss_pred HHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC
Q 000907 718 VLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 797 (1230)
Q Consensus 718 ~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 797 (1230)
+|+|+.++|..+|+|.+||.+.+...+++.+|||+|+|.+++.+||+|+|.|++.++.+...+.+++.++++++++.++|
T Consensus 925 ~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL 1004 (1470)
T PLN03140 925 VLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVEL 1004 (1470)
T ss_pred HHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 99999876667899999998876555677899999999999999999999999888876555666667789999999999
Q ss_pred CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000907 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 877 (1230)
Q Consensus 798 ~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~ 877 (1230)
.+++|+.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.+++
T Consensus 1005 ~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~ 1084 (1470)
T PLN03140 1005 DNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1084 (1470)
T ss_pred hhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH
Confidence 99999999988888999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHhcC----------------------------CCCCccCCCCCCCCccccccCCchhhhhhhhcHHHHHHhhHHHHHH
Q 000907 878 EAFDAG----------------------------IPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRIN 929 (1230)
Q Consensus 878 ~~fd~~----------------------------~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 929 (1230)
+.||+. .+|.+.||+++|||||++|+++.+.+.....||++.|++|+.+++.
T Consensus 1085 ~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~ 1164 (1470)
T PLN03140 1085 EAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRN 1164 (1470)
T ss_pred HhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHH
Confidence 999981 1233458999999999999988665544456899999999999888
Q ss_pred HHHHHHhcCCCCCCccccccCCCCchhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhh
Q 000907 930 KALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDL 1009 (1230)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~ 1009 (1230)
.+.+++...+++..++..+.++++.++|+|+.+|++|+++++||||.++.+|+++++++|+++|++||+++++..+++++
T Consensus 1165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~ 1244 (1470)
T PLN03140 1165 KALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDL 1244 (1470)
T ss_pred HHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhH
Confidence 77777666554444444445678999999999999999999999999999999999999999999999999877778899
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCH
Q 000907 1010 FNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTA 1089 (1230)
Q Consensus 1010 ~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~ 1089 (1230)
++++|++|+++++.++.++.+++|.+..||++|+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++
T Consensus 1245 ~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~ 1324 (1470)
T PLN03140 1245 TMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTA 1324 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccH
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHH
Q 000907 1090 AKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFA 1169 (1230)
Q Consensus 1090 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~ 1169 (1230)
++||+|+++++++.++++++|+++++++|+.++|..+++++++++++|+||++|+++||+||+|++|+||++|+++|++.
T Consensus 1325 ~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~ 1404 (1470)
T PLN03140 1325 AKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIV 1404 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCccccCC-----CCcHHHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000907 1170 SQFGDVQDRLES-----GETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230 (1230)
Q Consensus 1170 nef~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1230 (1230)
|||+|.+..|.+ ++++.+|++++|||+++++|++++++++|+++|+++++++++++|||||
T Consensus 1405 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1405 SQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999998776532 2467899999999999999999999999999999999999999999998
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-165 Score=1632.64 Aligned_cols=1164 Identities=31% Similarity=0.514 Sum_probs=949.8
Q ss_pred CccccCCcCCCC-ceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSL-KASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~-~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
||+|+|++.+.. ..+|+|++||++.++. ..++.++||+|+|.|++++||+|||.|+++++.+..+.+ +..+.++
T Consensus 104 Lk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~---~~~~~~~ 180 (1394)
T TIGR00956 104 LKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPD---GVSREEY 180 (1394)
T ss_pred HHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCC---CCCHHHH
Confidence 588999875432 4799999999987542 235679999999999999999999999998765322110 0111111
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
.++.++.+++.+||++++||.||++.++||||||||||+||++|+++|+|+||||||
T Consensus 181 -----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT 237 (1394)
T TIGR00956 181 -----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237 (1394)
T ss_pred -----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence 112357799999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchh
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIAD 237 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad 237 (1230)
||||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+|+.+++.+||+++||+||++.||||
T Consensus 238 sgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aD 317 (1394)
T TIGR00956 238 RGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTAD 317 (1394)
T ss_pred CCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence 99999999999999999997668899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCC---------------CCCCcccccCC
Q 000907 238 FLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKK---------------NSHPAALTTRK 302 (1230)
Q Consensus 238 ~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 302 (1230)
|+++++++.+.. ..... +...+.+.+++.+.|++++.++++.++++...++. ...+.......
T Consensus 318 fl~~~~~~~~~~-~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1394)
T TIGR00956 318 FLTSLTSPAERQ-IKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSP 395 (1394)
T ss_pred HHHhccChhhhh-ccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCC
Confidence 999998765421 11111 11223567899999999887766655443211110 00001112235
Q ss_pred cccCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHHHHH
Q 000907 303 YGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEI 382 (1230)
Q Consensus 303 ~~~~~~~~~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 382 (1230)
+..+++.|++.|++|+++..+||+..+..++++.+++|+++|++|++++.+..+ ...+.|++||++.+.++.++.++
T Consensus 396 ~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~---~~~r~g~lf~~~~~~~~~~~~~i 472 (1394)
T TIGR00956 396 YTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSD---FYSRGGALFFAILFNAFSSLLEI 472 (1394)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999998865433 34568999999999999999898
Q ss_pred HHHhccchhHHHhhhCCCCcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000907 383 SMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRL 462 (1230)
Q Consensus 383 ~~~~~~~~v~~rer~~~~y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~ 462 (1230)
..++.+|++++|||..++|++++|++|+.++++|+.++.+++|++|+|||+|++.++++||.++++.+++..++++++++
T Consensus 473 ~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~ 552 (1394)
T TIGR00956 473 ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRS 552 (1394)
T ss_pred HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCcccccC---C-------
Q 000907 463 IAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKIL---P------- 532 (1230)
Q Consensus 463 i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~~~~~---~------- 532 (1230)
++++++++..|+.+++++++++++++||+++.++||+||+|++|+||+.|++++++.|||.+..+.|.. .
T Consensus 553 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~ 632 (1394)
T TIGR00956 553 IGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNL 632 (1394)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998887731 1
Q ss_pred --------------CCCCcchHHHHhh-cCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 000907 533 --------------NKTKPLGIEVLDS-RGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQST 597 (1230)
Q Consensus 533 --------------~~~~~~g~~~l~~-~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 597 (1230)
+.+.+.|+++|+. +++. ..|.|.+++++++++++|.++.++++.+.++.........+.....
T Consensus 633 ~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 710 (1394)
T TIGR00956 633 GVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSL 710 (1394)
T ss_pred CccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeeccccc
Confidence 1124578899984 5554 5578999999999999999999999999885544332222221100
Q ss_pred cccccCCCccccccccCCCCccccccchhhhhhccCCCccccccccCCC-CCCCCcccCCCCceeEEeeeEEEEecCccc
Q 000907 598 EHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQ-PKNRGMVLPFEPFSLTFDEITYSVDMPQEM 676 (1230)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1230)
......... .... ........++. ... ...+... ........+.....++|+|+++.++.+
T Consensus 711 ~~~~~~~~~-~~~~------~~~~e~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~--- 772 (1394)
T TIGR00956 711 KRAKKAGET-SASN------KNDIEAGEVLG-----STD---LTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK--- 772 (1394)
T ss_pred cchhhcccc-cccc------cccccccccCC-----CCc---cccccccccccccccccCCCceEEEEeeEEEecCC---
Confidence 000000000 0000 00000000000 000 0000000 000000000112358999999987421
Q ss_pred ccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCeecChhcccceEEEEccCC
Q 000907 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQND 755 (1230)
Q Consensus 677 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~ 755 (1230)
.+++.+|+|||++++|||++||+||||||||||||+|+|+.+++ ..+|+|.+||++... .+++.+|||+|+|
T Consensus 773 ------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~ 845 (1394)
T TIGR00956 773 ------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQD 845 (1394)
T ss_pred ------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccc
Confidence 23467999999999999999999999999999999999997644 346999999998753 4678899999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-Ee
Q 000907 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPS-II 834 (1230)
Q Consensus 756 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~-il 834 (1230)
.+++.+||+||+.|++.++.+...+++++.++++++++.++|.+++|+.+|.++. +||||||||++||+||+.+|+ ||
T Consensus 846 ~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iL 924 (1394)
T TIGR00956 846 LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLL 924 (1394)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEE
Confidence 9999999999999999888765556666778899999999999999999987643 899999999999999999997 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcC---------------------------CCCC
Q 000907 835 FMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG---------------------------IPGV 887 (1230)
Q Consensus 835 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~---------------------------~~~~ 887 (1230)
||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||+. ..|.
T Consensus 925 lLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~ 1004 (1394)
T TIGR00956 925 FLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGA 1004 (1394)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCC
Confidence 9999999999999999999999998889999999999998899999981 0122
Q ss_pred ccCCCCCCCCccccccCCchhhhhhhhcHHHHHHhhHHHHHHHHHHHHhcCCCCCC---ccccccCCCCchhHHHHHHHH
Q 000907 888 SKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPAPGS---KELYFANQYPLSFFTQCMACL 964 (1230)
Q Consensus 888 ~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~ 964 (1230)
.+||+++|||||++|+++...+.....++.+.|+.|+.++...+.++....+.... .......+++.++|+|+++|+
T Consensus 1005 ~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~ 1084 (1394)
T TIGR00956 1005 PKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVL 1084 (1394)
T ss_pred CCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHH
Confidence 46899999999999998764433334589999999988776655544433221111 111122468899999999999
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHH-H
Q 000907 965 WKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVF-Y 1043 (1230)
Q Consensus 965 ~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~-~ 1043 (1230)
+|+++++||||.++++|+++++++|+++|++||++++ +++++++|+|++|+++++.++. +...+|.|+.||.+| +
T Consensus 1085 ~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~ 1160 (1394)
T TIGR00956 1085 WRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEV 1160 (1394)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999986 4678999999999988777665 344557788888886 8
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000907 1044 REKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAK-------FFWFLFFMFFSLLYFTFFGMMLVAW 1116 (1230)
Q Consensus 1044 rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~ 1116 (1230)
||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|++++++..++++++|++++++
T Consensus 1161 RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~ 1240 (1394)
T TIGR00956 1161 RERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISF 1240 (1394)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766 9999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCccccCC----------CCcH-
Q 000907 1117 TPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES----------GETV- 1185 (1230)
Q Consensus 1117 ~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~----------~~~~- 1185 (1230)
+|+..+|+.+++++++++++|+||++++++||.||+|++|+||++|+++|++.|||++.+..|.+ |.+|
T Consensus 1241 ~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~ 1320 (1394)
T TIGR00956 1241 NPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCG 1320 (1394)
T ss_pred CCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999998876632 1122
Q ss_pred -------------------------------HHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000907 1186 -------------------------------KQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQK 1229 (1230)
Q Consensus 1186 -------------------------------~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1229 (1230)
.+++ ..+|++.++.|+|++++++|++++ +++++++++....+
T Consensus 1321 ~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1321 EYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred HHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 3343 467999999999999999999988 77778887764433
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-92 Score=864.90 Aligned_cols=559 Identities=31% Similarity=0.540 Sum_probs=480.8
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEEC
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITIS 735 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~ 735 (1230)
.++.+.|+|+++..+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+...+ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567999999998753211 3578999999999999999999999999999999999998764 689999999
Q ss_pred CeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 736 GYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 736 g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
|++.+.+.+++.+|||+|||.++|++||+|+|.|++.+|+|...++++++++|+++++.+||.+++|+++|++..||+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888899999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcC---------CC-
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG---------IP- 885 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~---------~~- 885 (1230)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||++++|++||+. +.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999991 12
Q ss_pred ------------CCccCCCCCCCCccccccCCch-hhhhhhhcHHHHHHhhHHHH--H-HHHHHHHhcCCCCCCcccccc
Q 000907 886 ------------GVSKIRDGYNPATWMLEVTAPS-QEIALGVDFAAIYKSSELYR--I-NKALIQELSKPAPGSKELYFA 949 (1230)
Q Consensus 886 ------------~~~~~~~~~npad~~l~~~~~~-~~~~~~~~~~~~~~~s~~~~--~-~~~~~~~~~~~~~~~~~~~~~ 949 (1230)
|. +||++.|||||++|+++.+ .... ..+..+.++....++ . ..+......+....... .+
T Consensus 254 ~~~~~~~ff~~~G~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 329 (613)
T KOG0061|consen 254 SPRELLEFFSSLGF-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKK--VE 329 (613)
T ss_pred CHHHHHHHHHhCCC-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHHHHhhhcccccc--cc
Confidence 22 4899999999999998842 1100 001111111110000 0 00000000000000000 11
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhh
Q 000907 950 NQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVS 1029 (1230)
Q Consensus 950 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~ 1029 (1230)
.....+||.|+..+++|.+++.+|||.+...|+++.+++|+++|++||+++++ ..++++|.|++|+.+.++.+.++.
T Consensus 330 ~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~~~~~f~~~~ 406 (613)
T KOG0061|consen 330 IGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFILSFMTFLSMF 406 (613)
T ss_pred cccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11278999999999999999999999999999999999999999999999764 456779999999999998888888
Q ss_pred hhhhhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Q 000907 1030 SVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFF 1109 (1230)
Q Consensus 1030 ~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~ 1109 (1230)
+.++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..++++++
T Consensus 407 ~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~ 486 (613)
T KOG0061|consen 407 GAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESL 486 (613)
T ss_pred hHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCccccC-----CCCc
Q 000907 1110 GMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLE-----SGET 1184 (1230)
Q Consensus 1110 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~-----~~~~ 1184 (1230)
|+++++..||...|..+++++++++++|+||+++.++||.||+|++|+|+++|++||++.|||.+....|. +...
T Consensus 487 ~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~ 566 (613)
T KOG0061|consen 487 GLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCES 566 (613)
T ss_pred HHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999986333332 1122
Q ss_pred HHHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000907 1185 VKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230 (1230)
Q Consensus 1185 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1230 (1230)
.++.+..+.+++..+.|.++.+++++.++|+++++++|++..+.+|
T Consensus 567 ~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 567 TGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 3344446789999999999999999999999999999998776654
No 5
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.2e-91 Score=863.71 Aligned_cols=559 Identities=24% Similarity=0.402 Sum_probs=462.6
Q ss_pred CCceeEEeeeEEEEecCc----------------ccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 000907 657 EPFSLTFDEITYSVDMPQ----------------EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~ 720 (1230)
.+++++|.+++|+++... ..++..+.++++.+|+|+|+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 467899999999986432 1122333455678999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 000907 721 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800 (1230)
Q Consensus 721 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 800 (1230)
|+.+++..+|+|.+||++... ..++.+|||+|++.+++.+||+||+.|++.++.+.....+++.++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987654468999999998653 3346689999999999999999999998877765445556666789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHH
Q 000907 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 880 (1230)
Q Consensus 801 ~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~f 880 (1230)
+|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.+
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999988788999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hcCC----------------------CCCccCCCCCCCCccccccCCchhhh------h---hhhcHHHHHHhhHHHHHH
Q 000907 881 DAGI----------------------PGVSKIRDGYNPATWMLEVTAPSQEI------A---LGVDFAAIYKSSELYRIN 929 (1230)
Q Consensus 881 d~~~----------------------~~~~~~~~~~npad~~l~~~~~~~~~------~---~~~~~~~~~~~s~~~~~~ 929 (1230)
|+.. .|. .||+++|||||++|+++.+.+. . ......+.|++.. .+..
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 352 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL-APKV 352 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-cHHH
Confidence 9821 122 5899999999999998753210 0 0012233443211 1111
Q ss_pred HHHHHH--hcC-CCC-----CCccc-cccCCCCchhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCC
Q 000907 930 KALIQE--LSK-PAP-----GSKEL-YFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMG 1000 (1230)
Q Consensus 930 ~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~ 1000 (1230)
.+..+. ... ... ..+.. .....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|++||+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~ 431 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD 431 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111110 000 000 00000 011234578999999999999988 89999999999999999999999999984
Q ss_pred CCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 000907 1001 TKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVY 1080 (1230)
Q Consensus 1001 ~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y 1080 (1230)
..++++|.|++||++++.++.++++.++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|
T Consensus 432 -----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y 506 (659)
T PLN03211 432 -----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTY 506 (659)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 457899999999999998888887888999999999999999999999999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHH
Q 000907 1081 AMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPI 1160 (1230)
Q Consensus 1081 ~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~ 1160 (1230)
||+||++++++||+|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|++|+||+
T Consensus 507 ~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~ 584 (659)
T PLN03211 507 WMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTT 584 (659)
T ss_pred EcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 799999999999999
Q ss_pred HHHHHHHHHHhhCCCc-----cccCCC----CcHHHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000907 1161 AWTLYGFFASQFGDVQ-----DRLESG----ETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNF 1227 (1230)
Q Consensus 1161 ~y~~~~l~~nef~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1227 (1230)
+|+++|++.|||++.+ .+|+.. .....++ ...+++....|.++++|++++++|+++++++|++++|
T Consensus 585 ~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 585 FYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999998653 246321 0111122 2234445568999999999999999999999998876
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-90 Score=860.60 Aligned_cols=544 Identities=30% Similarity=0.475 Sum_probs=475.4
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCeecChhcccceEEEEccCCccCCCCC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 762 (1230)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4567999999999999999999999999999999999987653 357999999998776667888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
|+||+.|++.++.+.....++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+++|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988887666777778889999999999999999999764 67899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcCC---------CCC------------ccCCCCCCCCccc
Q 000907 842 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGI---------PGV------------SKIRDGYNPATWM 900 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~~---------~~~------------~~~~~~~npad~~ 900 (1230)
|||+.++..+++.|++++++|+|||+++|||+.+++++||+.. .|. ..||++.|||||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 9999999999999999988899999999999999999999921 110 2589999999999
Q ss_pred cccCCchhhhh-----hhhcHHHHHHhhHHHHHHHHHHHHhcCCCC---CCccccccCCCCchhHHHHHHHHHHHHHHhh
Q 000907 901 LEVTAPSQEIA-----LGVDFAAIYKSSELYRINKALIQELSKPAP---GSKELYFANQYPLSFFTQCMACLWKQHWSYS 972 (1230)
Q Consensus 901 l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~ 972 (1230)
+|+++.+.+.. ...++.+.|+.++.+++..+.......... .........++..+|+.|+.+|++|+++..|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~ 355 (617)
T TIGR00955 276 VQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVL 355 (617)
T ss_pred HHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 99987543211 123456667776655544333221111100 0111112245678999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCC
Q 000907 973 RNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYS 1052 (1230)
Q Consensus 973 R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~ 1052 (1230)
|||.++..|+++++++|+++|++||++++ +++++++|.|++|+++.++++.++....+.++.||++|+||+.+|+|+
T Consensus 356 R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~ 432 (617)
T TIGR00955 356 RDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence 99999999999999999999999999986 457789999999999998888887787888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 000907 1053 PMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYG 1132 (1230)
Q Consensus 1053 ~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 1132 (1230)
+++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.+++++++
T Consensus 433 ~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~ 512 (617)
T TIGR00955 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVI 512 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCcc-ccCCC------CcHHHHHHhhhCCCccchhHHHH
Q 000907 1133 LWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQD-RLESG------ETVKQFLRSYYGFKHDFLGAVAA 1205 (1230)
Q Consensus 1133 ~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 1205 (1230)
++++|+||++++++||+||+|++|+||++|++++++.|||.+.+. +|.++ +..|+++++.||++.++.|.+++
T Consensus 513 ~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~ 592 (617)
T TIGR00955 513 PFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLI 592 (617)
T ss_pred HHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHH
Confidence 999999999999999999999999999999999999999998765 56421 11257777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccC
Q 000907 1206 VVFVLPSLFAFVFALGIRVLNFQKR 1230 (1230)
Q Consensus 1206 il~~~~~~~~~~~~~~l~~~~~~~r 1230 (1230)
+|+++.++|+++++++|++...++|
T Consensus 593 il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 593 GLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999777776
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.5e-88 Score=894.30 Aligned_cols=566 Identities=23% Similarity=0.378 Sum_probs=483.2
Q ss_pred CCceeEEeeeEEEEecCcc--ccc---------------c--cccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 000907 657 EPFSLTFDEITYSVDMPQE--MKR---------------R--GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMD 717 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~--~~~---------------~--~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~ 717 (1230)
..+.+.|+|++........ .+. . +.+..++++|+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 4568999999887632110 000 0 12234578999999999999999999999999999999
Q ss_pred HHhCCCCC--CeEEEEEEECCeecCh--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC----CCCHHHHHH-HH
Q 000907 718 VLAGRKTR--GYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS----EVNSKTREM-FV 788 (1230)
Q Consensus 718 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~-~~ 788 (1230)
+|+|+.+. .+.+|+|.+||.+... ..+++.++|++|+|.+++.+||+|++.|++.++.+. ...+++..+ .+
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 1368999999987642 235667999999999999999999999998877543 223344333 35
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 000907 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVC 867 (1230)
Q Consensus 789 ~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~ 867 (1230)
+++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7789999999999999999889999999999999999999999999999999999999999999999999864 999999
Q ss_pred EecCCCHHHHHHHhcCC----------------------CCCccCCCCCCCCccccccCCchhhh----------hhhhc
Q 000907 868 TIHQPSIDIFEAFDAGI----------------------PGVSKIRDGYNPATWMLEVTAPSQEI----------ALGVD 915 (1230)
Q Consensus 868 ~~H~~~~~i~~~fd~~~----------------------~~~~~~~~~~npad~~l~~~~~~~~~----------~~~~~ 915 (1230)
++|||+.+++++||+.. .|. .||++.|||||++|++++++.. ....+
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~ 344 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQE 344 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCC-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHH
Confidence 99999999999999811 122 5899999999999998865321 11347
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCCC---------------CCCccccccCCCCchhHHHHHHHHHHHHHHhhcChHHHHH
Q 000907 916 FAAIYKSSELYRINKALIQELSKPA---------------PGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAV 980 (1230)
Q Consensus 916 ~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~ 980 (1230)
+++.|++|+.+++..+.++...... ...+.......+..|+|+|+++|++|+++++||||.++.+
T Consensus 345 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~ 424 (1394)
T TIGR00956 345 FETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLF 424 (1394)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8999999988776555443321110 0001112234578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCChHHHHHHH
Q 000907 981 RFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQ 1060 (1230)
Q Consensus 981 ~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~ 1060 (1230)
|+++++++|+++|++||+++++ +.++++|.|++||++++.++.++.++ +.++.||+||+||+.+|+|++++|++|+
T Consensus 425 r~~~~ii~~li~G~~F~~~~~~---~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~ 500 (1394)
T TIGR00956 425 MVFGNIIMALILSSVFYNLPKN---TSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIAS 500 (1394)
T ss_pred HHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHH
Confidence 9999999999999999999864 56789999999999999999887775 4566899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Q 000907 1061 VLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGF 1140 (1230)
Q Consensus 1061 ~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~ 1140 (1230)
+++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++++++++++|+||
T Consensus 501 ~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf 580 (1394)
T TIGR00956 501 IISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF 580 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCccccCC-------------------------C---CcHHHHHHhh
Q 000907 1141 IIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES-------------------------G---ETVKQFLRSY 1192 (1230)
Q Consensus 1141 ~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~-------------------------~---~~~~~~~~~~ 1192 (1230)
++|+++||+||+|++|+||++|+|||++.|||++..++|.. | .++.+|+...
T Consensus 581 ~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~ 660 (1394)
T TIGR00956 581 AIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLS 660 (1394)
T ss_pred ccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhc
Confidence 99999999999999999999999999999999998887731 0 1456888878
Q ss_pred hCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000907 1193 YGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNF 1227 (1230)
Q Consensus 1193 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1227 (1230)
||++.+|+|+|++||++|+++|++++++++++++.
T Consensus 661 ~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 661 FQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999874
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.7e-87 Score=878.17 Aligned_cols=569 Identities=23% Similarity=0.372 Sum_probs=475.8
Q ss_pred CCCceeEEeeeEEEEecCcc-----------------cccc-c---ccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHH
Q 000907 656 FEPFSLTFDEITYSVDMPQE-----------------MKRR-G---VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTT 714 (1230)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~-~---~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKST 714 (1230)
.+.+.+.|+|+++....... ..+. + ....++.+|+|+|+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 35678999999987652110 0000 1 1123578999999999999999999999999999
Q ss_pred HHHHHhCCCCCC-eEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCC-------CCHHHH--
Q 000907 715 LMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE-------VNSKTR-- 784 (1230)
Q Consensus 715 Ll~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~~-- 784 (1230)
|||+|+|+.++. .++|+|.+||.+......++.++||+|+|.+++.+||+|||.|++.++.+.. ...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999987542 4589999999987544446789999999999999999999999987763211 111111
Q ss_pred ----------------------HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 785 ----------------------EMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 785 ----------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+++||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999988999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhcCC----------------------CCCccCCCCCCCCcc
Q 000907 843 LDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDAGI----------------------PGVSKIRDGYNPATW 899 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~~~----------------------~~~~~~~~~~npad~ 899 (1230)
||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+.+ .|+ .||++.|||||
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf-~cP~~~n~ADF 445 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGF-KCPERKGTADF 445 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCC-CCCCCCChHHH
Confidence 999999999999999976 589999999999999999999821 122 58999999999
Q ss_pred ccccCCchhhhh------------hhhcHHHHHHhhHHHHHHHHHHHHhcCCCCCCccccccCCCCchhHHHHHHHHHHH
Q 000907 900 MLEVTAPSQEIA------------LGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQ 967 (1230)
Q Consensus 900 ~l~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~ 967 (1230)
++|++++.+... ...++++.|++|+.+++..+.++.........+.....++|..+++.|++.|++|+
T Consensus 446 l~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~ 525 (1470)
T PLN03140 446 LQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKE 525 (1470)
T ss_pred HHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHH
Confidence 999998643211 12468889999987766544332211000001111123458899999999999999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhc
Q 000907 968 HWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKG 1047 (1230)
Q Consensus 968 ~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~ 1047 (1230)
++.++|||..+..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.++ +.++.||+||+|||.
T Consensus 526 ~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~vf~ker~ 604 (1470)
T PLN03140 526 WLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPVFYKQRD 604 (1470)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccchhHHhhh
Confidence 9999999999999999999999999999999986544445567788999999888888776554 678899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 000907 1048 AGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVS 1127 (1230)
Q Consensus 1048 ~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 1127 (1230)
+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.++
T Consensus 605 ~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~ 684 (1470)
T PLN03140 605 LLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGG 684 (1470)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCcccc---C-CCCcHHHHHHhhhCCCcc--chh
Q 000907 1128 TLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRL---E-SGETVKQFLRSYYGFKHD--FLG 1201 (1230)
Q Consensus 1128 ~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~---~-~~~~~~~~~~~~~~~~~~--~~~ 1201 (1230)
+++++++++|+||++|+++||+||+|++|+||++|+++|++.|||.+..+.+ . +..+.|+.+++.+|++.+ |.|
T Consensus 685 ~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w 764 (1470)
T PLN03140 685 ALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYW 764 (1470)
T ss_pred HHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchh
Confidence 9999999999999999999999999999999999999999999997765431 1 122345555578999754 569
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 000907 1202 AVAAVVFVLPSLFAFVFALGIRVLN 1226 (1230)
Q Consensus 1202 ~~~~il~~~~~~~~~~~~~~l~~~~ 1226 (1230)
+++++|+||+++|++++++++++++
T Consensus 765 ~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 765 IGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-81 Score=767.20 Aligned_cols=541 Identities=25% Similarity=0.457 Sum_probs=476.2
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCeecChhcccceEEEEccCCccCCCCC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 762 (1230)
....+|+|+|+.++|||++.++||+||||||||++|+|..+.. ...|+|.+||.+.+...-++.++|++|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999976532 235799999998765444789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC----CHHHHH-HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEe
Q 000907 763 VYESLLYSAWLRLSSEV----NSKTRE-MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~----~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 837 (1230)
|+|+|.|+++++.+... .+.++. +..+.+++.+||++|+|+++|+...||+||||||||++|.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999999987322 222222 2577899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhcCC---------C-------------CCccCCCCC
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDAGI---------P-------------GVSKIRDGY 894 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~~~---------~-------------~~~~~~~~~ 894 (1230)
|+|+|||+.++.++++.||++++. +.|+++++|||+.++|++||+.+ . |+ .||+..
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf-~cP~r~ 364 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGF-KCPPRK 364 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCc-cCCCcc
Confidence 999999999999999999999854 89999999999999999999921 1 12 589999
Q ss_pred CCCccccccCCchhhhh------------hhhcHHHHHHhhHHHHHHHHHHHHhcCCCCCCccccccCCCCchhHHHHHH
Q 000907 895 NPATWMLEVTAPSQEIA------------LGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMA 962 (1230)
Q Consensus 895 npad~~l~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 962 (1230)
++|||+.++++..++.+ ...++.+.|.+|+.+++.....+........++......+|..++|.|++.
T Consensus 365 ~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~ 444 (1391)
T KOG0065|consen 365 GTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKA 444 (1391)
T ss_pred CHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHH
Confidence 99999999998321110 125789999999988876544432221112223334456789999999999
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHH
Q 000907 963 CLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVF 1042 (1230)
Q Consensus 963 l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~ 1042 (1230)
|+.|.++.+.||..++..++++.+++|+++|++|++.+. .+..+.+.|.|++||++++..+.++.++ +...+.||||
T Consensus 445 c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv~ 521 (1391)
T KOG0065|consen 445 CTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPVF 521 (1391)
T ss_pred HHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcchH
Confidence 999999999999999999999999999999999999983 4567789999999999999999988887 4455889999
Q ss_pred HhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Q 000907 1043 YREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHI 1122 (1230)
Q Consensus 1043 ~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1122 (1230)
+|||...+|++++|.++.+++++|+.++.+++|.+|.||++||++++++||.|+++++++.+|++++++++++++++...
T Consensus 522 ~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~ 601 (1391)
T KOG0065|consen 522 YKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSI 601 (1391)
T ss_pred HHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCccccCC-CC------------------
Q 000907 1123 ASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES-GE------------------ 1183 (1230)
Q Consensus 1123 a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~-~~------------------ 1183 (1230)
|+.++++.+++..+++||+||.++||+||+|++|+||+.|++|+++.|||++.+++|++ ||
T Consensus 602 An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~ 681 (1391)
T KOG0065|consen 602 ANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGAT 681 (1391)
T ss_pred HhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999961 10
Q ss_pred ------cHHHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000907 1184 ------TVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQ 1228 (1230)
Q Consensus 1184 ------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1228 (1230)
.+.+|++.+|++++.|.|+++||++||.++|.++..+++.|++.-
T Consensus 682 ~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 682 LGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred cCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 345788888999999999999999999999999999999998854
No 10
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-77 Score=732.55 Aligned_cols=531 Identities=28% Similarity=0.489 Sum_probs=449.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+||..++..++|+|++||++.+...+++.+|||+|||.++|+|||+|||.|+|++|.+.+ ....++
T Consensus 73 L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~k--- 142 (613)
T KOG0061|consen 73 LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEEK--- 142 (613)
T ss_pred HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHHH---
Confidence 6899999988889999999999888887889999999999999999999999999999986542 222222
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
+++||.++++|||++|+||+||+...||||||||||||||.+|+.||+|||||||||||
T Consensus 143 ---------------------~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 143 ---------------------RERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred ---------------------HHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 35699999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
||++|.++++.||++|+. |+|||+|||||+++++++||++++|++|+++|+|+++++.+||++.|++||++.||+||+.
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l 280 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLL 280 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHH
Confidence 999999999999999986 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCch--hhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCCCCCCcccccCCcccCHHHHHHHHHHHH
Q 000907 241 EVTSRK--DQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACFSRE 318 (1230)
Q Consensus 241 ~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~ 318 (1230)
++.+.+ ..+.... .......+.++..+...+....... .-.... ........+++.|+..+++|.
T Consensus 281 ~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 281 DLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLEALEK----SLSTSK-KVEIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHHHHhh----hccccc-ccccccCCcHHHHHHHHHHHH
Confidence 988743 1110000 0000001111100000000000000 000000 000111578999999999999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHHH-HHHHHhccchhHHHhhh
Q 000907 319 HLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMA-EISMTIAKLPVFYKQRD 397 (1230)
Q Consensus 319 ~~~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~-~~~~~~~~~~v~~rer~ 397 (1230)
+.+.+|++.....|.++.+.+++++|.+|++.+.+.... ....|++|+.+.+..+..+. .++.+..+++++.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999987554443 25678888888888777665 47788899999999999
Q ss_pred CCCCcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000907 398 LRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFG 477 (1230)
Q Consensus 398 ~~~y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~ 477 (1230)
.++|+.++|++|+.++++|+.++.+++|+.++|||+|++++..+|+++.++.++..+++++++.+++++.++...|.+++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCcccccCC--CCCCcchHHHHhhcCcccCCcch
Q 000907 478 SLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILP--NKTKPLGIEVLDSRGFFTDAYWY 555 (1230)
Q Consensus 478 ~~~~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~ 555 (1230)
+++.+++++++||+++.+.+|.||+|+.|+|+.+|++|+++.|+|.+....|... ..+...|.+++...++... ..
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 582 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SF 582 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--cc
Confidence 9999999999999999999999999999999999999999999998733344332 3456779999999888755 46
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000907 556 WLGVGALTGFIILFQFGFTLALSFLN 581 (1230)
Q Consensus 556 w~~~~~l~~~~~~~~~~~~~~l~~~~ 581 (1230)
|.++.++.++.++|++.+++++.+..
T Consensus 583 ~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 583 WLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999988753
No 11
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=8.4e-73 Score=701.01 Aligned_cols=536 Identities=27% Similarity=0.430 Sum_probs=449.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|+.......+|+|++||.+.+....++.+|||+|+|.+++++||+|||.|+++++.+.+. ...+
T Consensus 68 L~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~-------~~~~---- 136 (617)
T TIGR00955 68 MNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV-------TKKE---- 136 (617)
T ss_pred HHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC-------CHHH----
Confidence 57899998765567999999999987555678899999999999999999999999987643211 1111
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCc-cccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEM-LRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~-~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.++.++.+++.+||++++||.||+++ .++|||||||||+||+||+++|+|+||||||||
T Consensus 137 --------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 137 --------------------KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred --------------------HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 12357899999999999999999864 789999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhh
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l 239 (1230)
||+.++.++++.|+++++ .|+|+|+++|||+++++++||++++|++|+++|+||++++.+||+++|++||++.||+||+
T Consensus 197 LD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred hhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCCC---CCCcccccCCcccCHHHHHHHHHH
Q 000907 240 QEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKN---SHPAALTTRKYGVGKKELLKACFS 316 (1230)
Q Consensus 240 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~ 316 (1230)
+++.+...... .. ...+.+++.+.+++++.+.+............. ..........+..+++.|+..+++
T Consensus 276 ~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 276 VQVLAVIPGSE-----NE--SRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred HHHhhcCcccc-----cc--hHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 99876432211 00 011234455666665544443322211111000 000011123456788999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHH-HHHHHHhccchhHHHh
Q 000907 317 REHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGM-AEISMTIAKLPVFYKQ 395 (1230)
Q Consensus 317 R~~~~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~-~~~~~~~~~~~v~~re 395 (1230)
|.++..+||+..+..++++.+++++++|++|++.+.+.. +.....|++|+++.+.++.++ ..++....+|++++||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875433 334467888988888777765 4455666899999999
Q ss_pred hhCCCCcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000907 396 RDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANT 475 (1230)
Q Consensus 396 r~~~~y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~~ia~~ 475 (1230)
+..++|++++|++++.+.++|+.++.+++|.+++|||+|+++++.+|+.++++.++...++.+++.++++++++...|..
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCcc-cccCCC---CCCcchHHHHhhcCcccC
Q 000907 476 FGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW-KKILPN---KTKPLGIEVLDSRGFFTD 551 (1230)
Q Consensus 476 ~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~-~~~~~~---~~~~~g~~~l~~~~~~~~ 551 (1230)
+++++++++++|+||+++.+++|+||+|++|+||++|++++++.|||.+..+ .|...+ .+...|.++++.+|+..+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999988765 333211 234568999999998765
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000907 552 AYWYWLGVGALTGFIILFQFGFTLALSFL 580 (1230)
Q Consensus 552 ~~~~w~~~~~l~~~~~~~~~~~~~~l~~~ 580 (1230)
+.|.++++++++.++|+++.++++++.
T Consensus 586 --~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 586 --DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999998864
No 12
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.2e-70 Score=676.87 Aligned_cols=533 Identities=21% Similarity=0.335 Sum_probs=420.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|+++.. ..+|+|++||++.... .++.+|||+|+|.+++.+||+|||.|++.++.+.. ....+
T Consensus 111 L~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~---- 177 (659)
T PLN03211 111 LNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQE---- 177 (659)
T ss_pred HHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHH----
Confidence 57899987543 3699999999987543 24568999999999999999999999887653211 01111
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
.++.++++++++||++++||.||+...++|||||||||+||++|+++|+||+||||||||
T Consensus 178 --------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgL 237 (659)
T PLN03211 178 --------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 237 (659)
T ss_pred --------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 123478899999999999999999989999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
|+.++.++++.|+++++ .|+|+++++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.|||||++
T Consensus 238 D~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~l 316 (659)
T PLN03211 238 DATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLL 316 (659)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHH
Confidence 99999999999999986 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhC---CC--CCCC---CCCCc-ccccCCcccCHHHHH
Q 000907 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG---IP--FDKK---NSHPA-ALTTRKYGVGKKELL 311 (1230)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---~~--~~~~---~~~~~-~~~~~~~~~~~~~~~ 311 (1230)
++.+...........+.+ ...++..+.|++... .+..+... .. ..+. ..... ......+..+++.|+
T Consensus 317 dv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~ 392 (659)
T PLN03211 317 DLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQF 392 (659)
T ss_pred HHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHH
Confidence 998754321000000000 111223344432111 11000000 00 0000 00000 001112345789999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHH-HHHHHHHHHhccch
Q 000907 312 KACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITF-NGMAEISMTIAKLP 390 (1230)
Q Consensus 312 ~~l~~R~~~~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~-~~~~~~~~~~~~~~ 390 (1230)
..+++|.+++ +|++.....|+++.+++|+++|++|++.+ . .+.+...|++||++.+..+ ..+..++.+..+|+
T Consensus 393 ~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~ 466 (659)
T PLN03211 393 SILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERA 466 (659)
T ss_pred HHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999887 78888888999999999999999999874 1 2345568999998777665 44567777888999
Q ss_pred hHHHhhhCCCCcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 000907 391 VFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSM 470 (1230)
Q Consensus 391 v~~rer~~~~y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~ 470 (1230)
+++|||..++|++++|++|+.++++|+.++.+++|+.++|||+|+++++++|+.|+++.+++.+++++++.+++++++++
T Consensus 467 v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~ 546 (659)
T PLN03211 467 IFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDA 546 (659)
T ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCc-----ccccCCCCCCcchHHHHhh
Q 000907 471 VVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNS-----WKKILPNKTKPLGIEVLDS 545 (1230)
Q Consensus 471 ~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~-----~~~~~~~~~~~~g~~~l~~ 545 (1230)
..|+.+++++.+++++|+||+++ ++|+||+|++|+||++|++++++.|||.+.. +.|..+......+..++..
T Consensus 547 ~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~ 624 (659)
T PLN03211 547 KKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE 624 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh
Confidence 99999999999999999999997 7999999999999999999999999997643 2332211000001112222
Q ss_pred cCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000907 546 RGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLN 581 (1230)
Q Consensus 546 ~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~l~~~~ 581 (1230)
..+. ....|.++.++++++++++++.+++++..+
T Consensus 625 ~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 625 DVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 234788999999999999999999887543
No 13
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-66 Score=636.72 Aligned_cols=196 Identities=29% Similarity=0.427 Sum_probs=165.0
Q ss_pred cCCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEE
Q 000907 654 LPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT 733 (1230)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~ 733 (1230)
.|.-...++++||++.||.+ .+.+||+|+|+++++|+.+||+|||||||||.+.+|-..+++ ..|.|.
T Consensus 981 ~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp--~~G~V~ 1048 (1228)
T KOG0055|consen 981 LPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP--DAGKVK 1048 (1228)
T ss_pred cccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEE
Confidence 33445689999999999854 356799999999999999999999999999999999988775 479999
Q ss_pred ECCeecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCCccccc
Q 000907 734 ISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL-------VELNPLRQA 803 (1230)
Q Consensus 734 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~ 803 (1230)
+||.+++. ..+|+++|.|.|+|.||. .|++||+.|+. . +.+..+ +.+..+. .+|.+-.||
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE----IIEAAKLANAHNFISSLPQGYDT 1118 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH----HHHHHHHhhhHHHHhcCcCcccC
Confidence 99998654 567899999999999986 69999999971 1 123222 2222222 256677899
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 804 ~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.+|+.+. +||||||||++|||||++||+||||||.||+||+++.+.|++.|.+. ..|||.|++.|++|
T Consensus 1119 ~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1119 RVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS 1186 (1228)
T ss_pred ccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh
Confidence 9997664 79999999999999999999999999999999999999999999886 57999999999998
No 14
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.6e-58 Score=607.65 Aligned_cols=201 Identities=27% Similarity=0.396 Sum_probs=173.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. +++.+|+|||+.|++||++||+||||||||||+|+|+|..++ .+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4889999887731 135799999999999999999999999999999999998765 379999999886
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. ...++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 233444566889999999998888775 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||+.. ++..+.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDr 2139 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTR 2139 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998878999999999976 66677787
No 15
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-58 Score=581.96 Aligned_cols=191 Identities=23% Similarity=0.305 Sum_probs=159.2
Q ss_pred CceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCe
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 737 (1230)
...++|+|++.+|. ++...+|||||++|+|||.+||+|++|||||||.++|.+...+ .+|+|.|||.
T Consensus 1136 ~G~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCe
Confidence 34799999999884 2345799999999999999999999999999999999987764 4799999999
Q ss_pred ecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000907 738 PKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGL 807 (1230)
Q Consensus 738 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~ 807 (1230)
++.. .++|++++.+||||.+|. -|+|.||.- -.+..++.+.+++|..+|.+. .|..+.+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDP----------f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDP----------FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceec-CccccccCc----------ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 8754 578899999999999986 599999842 122234456777777766543 3444433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
+..++|-||||.+|+||||+++++||+|||+|+++|++|...|+++||+.. +++|||.+.|+.+.
T Consensus 1272 -gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T 1336 (1381)
T KOG0054|consen 1272 -GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT 1336 (1381)
T ss_pred -CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch
Confidence 345799999999999999999999999999999999999999999999865 58999999999874
No 16
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-55 Score=591.98 Aligned_cols=196 Identities=24% Similarity=0.307 Sum_probs=162.7
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|++++|.. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 46999999999841 224699999999999999999999999999999999998775 47999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 808 (1230)
+.. ..+|+.+++|||++.+|+. |++|||.+.. ..+ ++.+.++++..++. .-.|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 653 5678899999999999875 9999997531 112 23456666666653 2346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|++.. +++|+|+++|+++. + ..+|+
T Consensus 1372 G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~Dr 1441 (1622)
T PLN03130 1372 G-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDR 1441 (1622)
T ss_pred C-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCE
Confidence 3 4699999999999999999999999999999999999999999999874 58999999999874 3 44787
No 17
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.3e-55 Score=585.54 Aligned_cols=196 Identities=22% Similarity=0.275 Sum_probs=162.4
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|++++|+. +.+.+|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 36999999999841 234699999999999999999999999999999999998775 47999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+. ...+|+.++||||++.+++. |++|||.+.. ..+ ++.+.++++..++.+ -.|+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 64 35678899999999999874 9999997531 112 234566777666643 346666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|+||+||||||+||+++.+.|.+.|++.. +++|+|+++|+++. ...+|+
T Consensus 1369 G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~Dr 1438 (1495)
T PLN03232 1369 G-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDK 1438 (1495)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCE
Confidence 3 4699999999999999999999999999999999999999999999874 58999999999863 345787
No 18
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2e-54 Score=574.26 Aligned_cols=201 Identities=20% Similarity=0.314 Sum_probs=165.3
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC------------
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG------------ 726 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~------------ 726 (1230)
..++|+||+|+|+.. +++.+|+|+|++|+||+.+||+||||||||||+++|.|.+++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999998521 2246999999999999999999999999999999999987651
Q ss_pred ----------------------------------------eEEEEEEECCeecC---hhcccceEEEEccCCccCCCCCH
Q 000907 727 ----------------------------------------YITGNITISGYPKN---QETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 727 ----------------------------------------~~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+.+|+|.+||.++. ...+|+.+|||+|++.+|+ .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 13799999999864 3567889999999999885 799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-------NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+|||.++. + +.+. +.++++++..++ .+-.||.+|..+ ..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999851 1 2222 235556665554 344588888654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+||+.+++.|++.|+++. .+++|+|+++|+++ .....|+
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~ 1427 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDK 1427 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCE
Confidence 99999999999999999999886 36899999999985 3456777
No 19
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.9e-53 Score=568.11 Aligned_cols=196 Identities=19% Similarity=0.214 Sum_probs=162.3
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|++++|+. +...+|+|||++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEE
Confidence 46999999999852 123599999999999999999999999999999999998775 47999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+.. ..+|+.+++|||++.+|+. |++|||.... ..+ ++.+.++++..++.+ -.|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 653 5678899999999999975 9999996211 122 233566777776643 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+++|+++. ...+|+
T Consensus 1419 G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~Dr 1488 (1522)
T TIGR00957 1419 G-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTR 1488 (1522)
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCE
Confidence 3 4699999999999999999999999999999999999999999998864 58999999999863 345787
No 20
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.8e-52 Score=478.53 Aligned_cols=189 Identities=28% Similarity=0.357 Sum_probs=158.1
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec--C---hhcccceEEEEccCC--c
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK--N---QETFTRISGYCEQND--I 756 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~--~---~~~~~~~~~~v~q~~--~ 756 (1230)
+...+++||||++++||++||+|+||||||||.++|+|+.+| .+|+|.++|.+. + ....++.+-+++||+ .
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 345799999999999999999999999999999999998876 479999999762 1 123456777888876 6
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 757 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
+.|.+||++.+......... ....++++++.++++..+|.. ..+++ +++||||||||++|||||+.+|++|+
T Consensus 380 LnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli 452 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLI 452 (539)
T ss_pred cCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEE
Confidence 88999999999877554332 235566778999999999985 34443 56899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||||.||+..+..|.++|+++.++ |.|.|++|||.. -+-...|+
T Consensus 453 ~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~dr 499 (539)
T COG1123 453 LDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADR 499 (539)
T ss_pred ecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCce
Confidence 99999999999999999999999765 999999999976 34456676
No 21
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.4e-51 Score=546.27 Aligned_cols=196 Identities=24% Similarity=0.265 Sum_probs=163.4
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..|+|+|++++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 46999999999842 224599999999999999999999999999999999998775 47999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 808 (1230)
+.. ..+|+.++||||++.+|+. |++|||... ...+ ++.+.++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 653 5678899999999999874 999999531 1122 3446777887777543 46667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~-p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++ |+||+||||||+||+++.+.|.+.|++.. +++|||+++|+++ ....+|+
T Consensus 1443 G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~Dr 1513 (1560)
T PTZ00243 1443 G-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDK 1513 (1560)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCE
Confidence 3 46999999999999999996 89999999999999999999999998864 5899999999985 4466887
No 22
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-50 Score=540.12 Aligned_cols=195 Identities=21% Similarity=0.242 Sum_probs=163.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|++++|+. +.+.+|+|||++|+|||.+||+|+||||||||+++|.|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999999852 23569999999999999999999999999999999999875 37999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+.. ..+|+.++||||++.+|+. |+||||.... .. .++.+.++++..++.+ -.|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 753 4678899999999999974 9999995321 11 2345677888877743 346666653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1351 -G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~Dr 1420 (1490)
T TIGR01271 1351 -GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQ 1420 (1490)
T ss_pred -CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCE
Confidence 34699999999999999999999999999999999999999999999864 5799999999985 3455887
No 23
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-50 Score=489.37 Aligned_cols=190 Identities=20% Similarity=0.338 Sum_probs=155.0
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHS 758 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 758 (1230)
+.+|+|+|+++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.++.. ...++.++|++|++ .++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 4589999999999999999999999999999999998652 137999999987532 12345689999985 477
Q ss_pred CCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 759 PYVTVYESLLYSAWLRLSS--EVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
+.+||.||+.+........ ........+.++++++.+++. +..++.+ +.||||||||++||+||+.+|++|+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lll 428 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILI 428 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 8899999998753211110 012233445688999999996 4566654 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.+++.+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 429 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~ 474 (506)
T PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDR 474 (506)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999888999999999986 56667777
No 24
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-50 Score=490.32 Aligned_cols=187 Identities=22% Similarity=0.368 Sum_probs=153.5
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccC---CccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQN---DIHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~---~~~~~~ 760 (1230)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.+||++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 89999999999999999999999999999999998765 37999999987532 1234578999998 467889
Q ss_pred CCHHHHHHHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000907 761 VTVYESLLYSAWLR---LSS--E-VNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 833 (1230)
Q Consensus 761 ltv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~i 833 (1230)
+||.||+.+....+ ... . .......+.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|++
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCE
Confidence 99999998753211 000 0 11222335578899999996 6666654 46999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 834 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 834 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+|||+.++..+.+.|++++++|.|||++|||+. .+.+..|+
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~ 478 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDR 478 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999999878999999999986 45566676
No 25
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-49 Score=491.43 Aligned_cols=211 Identities=21% Similarity=0.211 Sum_probs=167.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+...... .....+.+.+|+||||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 37889999887421000 00000124699999999999999999999999999999999998764 379999999875
Q ss_pred Ch------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 740 NQ------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
.. ..+++.++|++|++ .+++.+||.|++.+....+. .....+..++++++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 32 12456799999997 58889999999987644321 112334456788999999996 455555 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++ .+.+..|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dr 533 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHR 533 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999999765 899999999987 45566777
No 26
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-49 Score=484.58 Aligned_cols=187 Identities=22% Similarity=0.353 Sum_probs=154.0
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 760 (1230)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.+||++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 69999999999999999999999999999999998765 37999999987532 12345799999995 57788
Q ss_pred CCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 761 VTVYESLLYSAWLRLS---SEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+||.||+.+....... ........++.++++++.+++. +..++.+ ..||||||||++||++|+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321110 0112233345688999999995 5566654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~ 464 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDR 464 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999878999999999986 55666776
No 27
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.4e-49 Score=481.85 Aligned_cols=202 Identities=20% Similarity=0.312 Sum_probs=160.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC-Cee-
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS-GYP- 738 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~- 738 (1230)
++++|+++.+... ..+++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcc
Confidence 6677777766310 01234699999999999999999999999999999999998764 37999996 532
Q ss_pred --cCh------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccc
Q 000907 739 --KNQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-----LRQALV 805 (1230)
Q Consensus 739 --~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~ 805 (1230)
... ...++.++|++|++.+++.+||.||+.+...+. ...+..+++++++++.+++.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999998899999999998754321 122333456788999999975 33444
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 806 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||++. .+.+..|+
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~ 497 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDR 497 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCE
Confidence 4579999999999999999999999999999999999999999999998764 899999999986 45566776
No 28
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6e-49 Score=482.63 Aligned_cols=187 Identities=26% Similarity=0.314 Sum_probs=154.5
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---h---cccceEEEEccCC--cc
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---E---TFTRISGYCEQND--IH 757 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~---~~~~~~~~v~q~~--~~ 757 (1230)
+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ .+|+|.++|.++.. . .+++.++|++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999864 37999999987532 1 1346789999996 47
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 758 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 758 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
++.+||.||+.+....+.. .....+.+++++++++.+++. +..++. +..|||||||||+||+||+.+|++|+|
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 8889999999886432211 122333456688999999997 355554 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+.+++.+.+.|++++++ |+|||++||++. .+.+..|+
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~ 495 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQ 495 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCe
Confidence 9999999999999999999999765 899999999986 45566676
No 29
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.3e-49 Score=480.68 Aligned_cols=190 Identities=18% Similarity=0.318 Sum_probs=155.5
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHS 758 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 758 (1230)
+.+|+|+||++++||+++|+||||||||||||+|+|..++ +.+|+|.++|.++.. ...++.+||++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3589999999999999999999999999999999998753 137999999987632 22356789999995 578
Q ss_pred CCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 759 PYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
+.+||+||+.+...-... ........++.++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 899999999875321110 01122334456889999999964 456554 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.++..+++.|++++++|.|||++|||+. ++.+..|+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 472 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDR 472 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999888999999999986 55566776
No 30
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.6e-49 Score=479.07 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=152.0
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChh----cccceEEEEccCC---ccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQND---IHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 760 (1230)
+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 58999999999999999999999999999999998765 379999999875321 1245689999984 47888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCC
Q 000907 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEP 839 (1230)
+|+.|++......+..........++.++++++.+++. +..++.+ +.||||||||++||++|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111110011222345678999999996 5666654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 840 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 840 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+|||+.+++.+.+.|++++++|.|||++||++. ++.+..|+
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~ 472 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADR 472 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 9999999999999999999878999999999986 56666777
No 31
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-48 Score=474.83 Aligned_cols=187 Identities=21% Similarity=0.363 Sum_probs=153.5
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 760 (1230)
+++|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 89999999999999999999999999999999998764 47999999987532 12346789999986 48888
Q ss_pred CCHHHHHHHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 761 VTVYESLLYSAWLRL-SSE--VNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+|+.||+.+...... ... ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987532111 000 11223345678899999994 5666664 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+.++..+++.|++++++|.|||++|||+. ++.+..|+
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 465 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADR 465 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCE
Confidence 9999999999999999999999888999999999986 45566676
No 32
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-48 Score=468.17 Aligned_cols=188 Identities=17% Similarity=0.285 Sum_probs=149.5
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChh----cccceEEEEccCC---ccCC
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQND---IHSP 759 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~ 759 (1230)
.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+. .+++
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 489999999999999999999999999999999998765 479999999876421 2345689999985 3678
Q ss_pred CCCHHHHHHHHHH--h-cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 760 YVTVYESLLYSAW--L-RLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 760 ~ltv~e~l~~~~~--~-~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
.+|+.+|..+... . ...........++.++++++.+++. +..++. +..||||||||++||++|+.+|+|||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEE
Confidence 8888877433210 0 1000012223345678899999985 344554 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.++..+++.|+++.++|+|||++||++. ++.+..|+
T Consensus 415 LDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~ 460 (491)
T PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDR 460 (491)
T ss_pred EcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCE
Confidence 99999999999999999999999888999999999986 45566676
No 33
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.8e-46 Score=457.33 Aligned_cols=202 Identities=19% Similarity=0.316 Sum_probs=155.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 378889988763 24699999999999999999999999999999999997542 1379999999764
Q ss_pred Ch----hcccceEEEEccCCccCC--CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000907 740 NQ----ETFTRISGYCEQNDIHSP--YVTVYESLLYSAWL--RLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGV 810 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~--~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 810 (1230)
.. ...++.++|++|++.+++ ..++++++.+.... ....... ...++.++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 123567999999876543 24677766543211 1111111 223456889999999986 666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHH-HHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~-~fd~ 882 (1230)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||++. ++.+ ..|+
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~ 472 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHR 472 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhhee
Confidence 4799999999999999999999999999999999999999999999998765 47999999986 3333 2454
No 34
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2e-45 Score=396.57 Aligned_cols=212 Identities=26% Similarity=0.323 Sum_probs=171.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++.+|++..++.+...-.. ..+...++++||+++++||.++|+|.||||||||-.+|.++.++ +|+|.++|.++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i 350 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDI 350 (534)
T ss_pred eEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccc
Confidence 34555555555543221111 12345799999999999999999999999999999999998764 49999999986
Q ss_pred Ch------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 740 NQ------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.. ...|+.+-.|+||+ .+.|.+||.|-+.-+.....+ ..+..++++++.+++++.||+...- -. .+.
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r--~R--YPh 425 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATR--NR--YPH 425 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHh--hc--CCc
Confidence 53 24567889999998 578999999999887666544 4678889999999999999986332 12 256
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||||++||||++.+|++++||||||+||-.-+.+|+++||++.+ .|.+-++++||.. -+-.+.|+
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~ 496 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHR 496 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhce
Confidence 8999999999999999999999999999999999999999999999964 5999999999986 44556665
No 35
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.5e-43 Score=434.10 Aligned_cols=186 Identities=22% Similarity=0.319 Sum_probs=150.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 488999988762 34699999999999999999999999999999999998765 3799998542
Q ss_pred ChhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGq 817 (1230)
..+||++|+. .+++.+||.|++.+...... .... ....+++++.+++.+ ..++.+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999986 67888999999987642211 1111 123457899999964 345543 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ .| |||++||++. .+....|+
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~-~~~~~~d~ 511 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHDRW-FLDRIATH 511 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999886 24 8999999986 45555666
No 36
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=435.50 Aligned_cols=183 Identities=20% Similarity=0.266 Sum_probs=150.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 588999998763 24699999999999999999999999999999999998765 3799999873
Q ss_pred ChhcccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000907 740 NQETFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgG 816 (1230)
+.+||++|+.. +.+.+|+.|++.+.. .. . ..++.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE---G--DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC---C--ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 46899999864 556789999986421 11 1 1134578899999984 4555553 479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||++. .+....|+
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~ 504 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATR 504 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999876 459999999986 44455565
No 37
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.8e-42 Score=426.57 Aligned_cols=186 Identities=20% Similarity=0.307 Sum_probs=150.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc--
Confidence 488899988762 34699999999999999999999999999999999998764 3799998542
Q ss_pred ChhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGq 817 (1230)
..+||++|+. .+++.+||.|++.+...... .... +..++++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999986 47888999999987642211 1111 123567899999964 345543 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||++. .+....|+
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~ 509 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATH 509 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999872 3 8999999986 44455666
No 38
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.9e-43 Score=427.07 Aligned_cols=183 Identities=22% Similarity=0.251 Sum_probs=153.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. + ..|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 478888887652 2 248999999999999999999999999999999998765 37999875
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888899999999875211 111 124688999999987777654 479999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+....|+
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDr 523 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDR 523 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999764 899999999976 44455676
No 39
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-44 Score=357.31 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=168.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|++.++ +..++|+|||+++++||+++|+|||||||||||+||.++..+ .+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEecc
Confidence 5666666554 567899999999999999999999999999999999998765 4799999997653
Q ss_pred ----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 ----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
....|+.+|+|+|+.++||++||.||+..+...- ...++++.++.+.++|+.+||.+.+|.+ +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2457889999999999999999999999874322 2456677778889999999999998876 4589999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
|||||+|||||+.+|+++|+|||||+|||+...++.+.+++++++|.|.|++||+-.
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH
Confidence 999999999999999999999999999999999999999999999999999999765
No 40
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-39 Score=405.69 Aligned_cols=186 Identities=24% Similarity=0.317 Sum_probs=149.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~- 381 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTK- 381 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCC-
Confidence 478899988763 35699999999999999999999999999999999998764 3799988 432
Q ss_pred ChhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGq 817 (1230)
-.+||++|+. .+++.+||.|++.+..... .... ....+.++++.+++. +..++.+ +.|||||
T Consensus 382 ------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 382 ------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred ------cEEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 1589999975 5888999999998753210 0111 123467889999885 3455554 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||++|||.. .+-...|+
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~ 506 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTE 506 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999875 459999999975 34445555
No 41
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=403.73 Aligned_cols=182 Identities=20% Similarity=0.333 Sum_probs=146.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++|+++.+. ++.+|+|+|++|++||++||+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 488899988762 35699999999999999999999999999999999998765 3799998641
Q ss_pred ChhcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000907 740 NQETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgG 816 (1230)
..+||++|+. .+.+..|+.+++.. . . .....+.++++++.+++.. ..++.+ +.||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34556677776531 1 1 1112345788999999963 455554 469999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ .| |||++|||+. .+....|+
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~ 496 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDD 496 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999886 34 9999999975 45555666
No 42
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-41 Score=351.33 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=172.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++++++.+. ...+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 467778877663 36799999999999999999999999999999999998875 479999999987
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
. .....++||+|++.++|.+||.||+.++...+. ..++++.+++++.++.+||.+..|.+ +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 345678999999999999999999999876653 34566667899999999999998876 5689999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||||+.+|+||+||||+++||+.|+..+.+.|.++. +.++||+++|||....+ .+-|+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv-~LsdR 200 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV-YLADR 200 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH-hhhCE
Confidence 9999999999999999999999999999999999888875 55899999999988554 46777
No 43
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.6e-41 Score=349.75 Aligned_cols=201 Identities=27% Similarity=0.412 Sum_probs=168.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|++..+... .....+|++||++|++||+++|+|||||||||||++|.|...| .+|.|.++|.+..
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 3467777666421 1225799999999999999999999999999999999998775 4799999998754
Q ss_pred h-------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCC
Q 000907 741 Q-------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ-ALVGLPGVNG 812 (1230)
Q Consensus 741 ~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~ 812 (1230)
. ..+++.+|||+|+..+.|.+||.||+.++..+... ......+.++++++.+||.+..+ +. +.+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 2 12456799999999999999999999987665432 22245667899999999986665 43 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||||+|||||+.+|+++|.||||.+||+.+++.|+++++++.++ |+|+|++||||. +-...|+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr 211 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADR 211 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCE
Confidence 9999999999999999999999999999999999999999999999765 999999999985 5567777
No 44
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-40 Score=350.04 Aligned_cols=202 Identities=27% Similarity=0.436 Sum_probs=171.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.|. ++ .+|+|||+++++||+++|+||||||||||+|+|.|..+| .+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 588999999874 12 599999999999999999999999999999999998775 489999999886
Q ss_pred ChhcccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQETFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.....+..+|||||... .-..+||+|.+..+...+.. ...+ +.+.+.++++|+.+|+.+.+|+.+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 65444578999999542 22337999999886332221 1222 3336779999999999999999876 5999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcC
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 883 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~ 883 (1230)
||+||+.|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~v 209 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRV 209 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEE
Confidence 9999999999999999999999999999999999999999999988999999999998 677889983
No 45
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-40 Score=348.68 Aligned_cols=203 Identities=23% Similarity=0.319 Sum_probs=176.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
+++++++..+... ..+...+|+|||++|++||++||+|.||||||||++++.++..| .+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 5788888766421 12346799999999999999999999999999999999998775 4899999997753
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...|+.+|+++|+..++...||.||+.|...+.. .++++.+++|.++++.+||.+.++.+ +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 2 3567899999999999999999999999977653 56788899999999999999888876 45899
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+|||||+.+|+|||+|||||+|||.+.+.|+++|+++.++ |.||+++||+.. -+-+..|+
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~r 211 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDR 211 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhh
Confidence 99999999999999999999999999999999999999999998654 999999999875 45556677
No 46
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.3e-40 Score=324.59 Aligned_cols=191 Identities=27% Similarity=0.367 Sum_probs=169.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
+.|++|+..|+ +++.+|+||||.|++||++-|+||||||||||||+|.+...+ .+|+|.++|.++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecc
Confidence 57888887774 236799999999999999999999999999999999997664 4799999999864
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...||.+|+|+||..+.+..||.||+.|+.... .....+.+++|.++++..||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 2 246789999999999999999999999987654 345566778899999999999887765 45899
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||||||++||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||++.|||..
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~ 198 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE 198 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH
Confidence 99999999999999999999999999999999999999999999889999999999853
No 47
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5e-40 Score=335.79 Aligned_cols=200 Identities=28% Similarity=0.391 Sum_probs=175.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++++++++ +++.|++|||++|++||+++||||||||||||||+|.|+.+|. +|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD--KGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC--CCeEEEcCcch
Confidence 57888888754 6788999999999999999999999999999999999988764 79999999875
Q ss_pred Ch------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCC
Q 000907 740 NQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~ 812 (1230)
.. ...++++|+++|+-.+|..+||+||+.|..+ .....+++..++.+..-++..||... .+.. +.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 32 2456789999999999999999999998743 33456777777888888999999876 5544 568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+||+++||||+.||+|+|+||||+||||.++..+-++++++.+. |.|++++|||.. +++...|+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Dr 215 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADR 215 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhce
Confidence 9999999999999999999999999999999999999999999999766 999999999987 57777787
No 48
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-40 Score=336.52 Aligned_cols=198 Identities=25% Similarity=0.370 Sum_probs=175.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++|+|++..+ +++.+++|+|++|++||+++++|||||||||+||+|.++..+ .+|+|.+||.++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 5677777655 457899999999999999999999999999999999998875 4899999999865
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP--LRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSg 815 (1230)
. ..+|+.+|||-|.-.+||++||.||+.+-..+. ..+++..+++++++++.+||.+ ..+++ +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 467899999999999999999999998876654 3567778889999999999975 55554 578999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||.+||||+.+|+|||+|||+++|||.++.++++.++++.++ |+|||++|||-. |-+.+-|+
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadr 205 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADR 205 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhce
Confidence 9999999999999999999999999999999999999999998755 999999999976 56678888
No 49
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-39 Score=365.46 Aligned_cols=198 Identities=32% Similarity=0.455 Sum_probs=174.8
Q ss_pred eEEeeeEEEEecCcccccccccCC-ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDD-KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
++++|++..+ + ++.+|+||||++++||++|++||||||||||||+|+|...+ .+|+|.++|.+.
T Consensus 5 i~~~~l~k~~-------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 5 IEVRNLTKKY-------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeecceEEEe-------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 5667777655 4 46899999999999999999999999999999999998875 489999999886
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.... ...+++++++++.++|.+..++. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 54 4567889999999999999999999999998886432 44566799999999999855554 45799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+++|++|||||||+||||.++..+++.|++++++| +||+++||+++ ++.+.+|+
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~ 206 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDR 206 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999887 89999999997 67777897
No 50
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=364.35 Aligned_cols=187 Identities=20% Similarity=0.379 Sum_probs=156.1
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccC---CccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQN---DIHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~---~~~~~~ 760 (1230)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.+||++... ...+..++|||.| +-+++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 57899999999999999999999999999999996543 37999999998643 2345678999987 467889
Q ss_pred CCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEe
Q 000907 761 VTVYESLLYSAWLRLSS--EVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 837 (1230)
++|.+|+.++...+... -.+.....+.+++..+.+++.... +.. +..||||.+|||.|||.|..+|++|+||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 99999998873222211 234445556788899999886332 233 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||.|.|.-++.+|.++|++++++|++||++|-+.. |+..+.|+
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DR 470 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDR 470 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCE
Confidence 999999999999999999999999999999999865 88889998
No 51
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=324.22 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=165.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC---CCCeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK---TRGYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g 736 (1230)
.++++|+++.| +++++|+|||++|++++++|++|||||||||||+++.... +.-.++|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 57788888876 4578999999999999999999999999999999998743 2235789999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGV 810 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~ 810 (1230)
+++.. ...|+.+|+|+|.+..|| +|++||+.|+.++.... .++.++.|+..++...|.+- .|++-.. .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 88633 457899999999999999 99999999998776432 25667888998988888643 3443222 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.+|||||+|||||||||+.+|+|||||||||+|||.+...|-+++.+++ +.-|||++||.+.
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq 209 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ 209 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH
Confidence 4799999999999999999999999999999999999999999999996 6799999999876
No 52
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-39 Score=358.23 Aligned_cols=199 Identities=28% Similarity=0.400 Sum_probs=178.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++.++ ++..+|+|+|+++++||+++|+||||||||||||+|+|+..+ .+|+|.++|.++
T Consensus 3 ~i~l~~v~K~y-------------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSF-------------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEc-------------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 46778887765 232399999999999999999999999999999999998775 479999999998
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
+. ...+|.+++|+|+..++|+|||+||+.|+.+.+ ...+++.+++|+++.+.|++.+..|++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 75 456789999999999999999999999997765 346677888999999999999999987 458999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+++|+++|||||.|+||...+..+...|+++.++ |.|+|.+|||+. |...+.|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladr 203 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADR 203 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999999999999999999998755 899999999986 67788888
No 53
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-39 Score=360.30 Aligned_cols=200 Identities=26% Similarity=0.395 Sum_probs=177.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++..+ ++..+|+|+|++|++||+++|+|||||||||||++|+|...+. +|+|.++|+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEC
Confidence 57788887665 4578999999999999999999999999999999999988764 79999999997
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...+|.+|+|+|+..+||+|||.||+.|+..++ ....+++.+++++++++.++|.+..+++ +.+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 65 356789999999999999999999999997633 3345566778999999999999988876 458999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++||||||.|+||..-+.++..-|+++.+ .|.|.|++|||.. |-+.+-|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDr 206 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDR 206 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccc
Confidence 999999999999999999999999999999999999999875 4999999999987 56688888
No 54
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4e-39 Score=343.62 Aligned_cols=202 Identities=29% Similarity=0.419 Sum_probs=171.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++.+|+++.|. ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 367888888773 56899999999999999999999999999999999998775 379999999986
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. +.+.+.++||||.....+.+||+|.+.++..-.... ....++..+.+++.++.+++.+.+++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 567789999999998888999999998874322111 1123344457899999999999999875 46999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+.|||||+++|++|+||||||.||...+.++++++++++ ++|+|||+++||++.. ....|+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A-~ryad~ 208 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA-ARYADH 208 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCE
Confidence 99999999999999999999999999999999999999999998 4599999999999844 345565
No 55
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-39 Score=340.03 Aligned_cols=191 Identities=29% Similarity=0.427 Sum_probs=171.5
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCe---ecCh-hcccceEEEEccCCccC
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY---PKNQ-ETFTRISGYCEQNDIHS 758 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~ 758 (1230)
.+...+++|||++|+.||++|++|||||||||||++|+|+..+. .|.|.+||. +.+. ....|++|||+|+..+|
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC--CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 45667999999999999999999999999999999999998764 799999999 5443 34467899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
++|||.||+.|+...+ ....++.+.+.+++++++.++|++..+.+ +.+|||||||||++||||+.+|++|||||
T Consensus 90 ~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 90 PHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred ccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 9999999999998776 23345667788899999999999998876 56899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+++||..-+.++.+.|+++.++ |.|++++|||+. +.++.+|+
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladr 207 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADR 207 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcce
Confidence 99999999999999999998765 999999999987 88999998
No 56
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.6e-33 Score=372.26 Aligned_cols=201 Identities=22% Similarity=0.346 Sum_probs=172.2
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.+. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 3688999988773 1235799999999999999999999999999999999998765 47999999998
Q ss_pred cCh--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 739 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 739 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
+.. ...++.+|||+|++.+++.+||+||+.+.+.++. ...++.+++++++++.+||.+..++.+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 642 2356789999999999999999999999876542 233344567899999999998877764 479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+||+||+.+|++|+|||||+|||+.+++.+++.|++++ +|+|||++||++. ++....|+
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDr 1129 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDR 1129 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999985 6999999999986 45556777
No 57
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=323.91 Aligned_cols=203 Identities=26% Similarity=0.323 Sum_probs=170.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++..|+ +++++|+|||++|++||++||+|||||||||||++|.|..++ .+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccch
Confidence 478888887764 467899999999999999999999999999999999997664 479999999764
Q ss_pred Ch------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 740 NQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-----SEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
.. ..+++.+||++|++.+.+.++|.+|+..+..-+.+ -....++.+..+-+.++.+|+.+.+-.+.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 35678999999999999999999999876322211 012223445667889999999988877643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.|||||+|||+|||||+.+|+|+|.|||+++|||.+++.|++.|+++.+ +|.|||++.||-.. .-+.+|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~R 217 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADR 217 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhh
Confidence 6999999999999999999999999999999999999999999999874 59999999999764 3467887
No 58
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.3e-37 Score=380.21 Aligned_cols=185 Identities=18% Similarity=0.244 Sum_probs=143.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ +++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 488999998763 123699999999999999999999999999999999998765 3799988652
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqr 818 (1230)
..+||++|+. .+.+++.++.........+ ... ++.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3689999975 3445666664332111111 111 245788999999974 44444 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++||++|+.+|++|+|||||+|||+.+...+.+.|++. .| |||++||++. .+....|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~dr 693 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDE 693 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999998888764 34 9999999986 34455565
No 59
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=315.38 Aligned_cols=185 Identities=29% Similarity=0.366 Sum_probs=169.0
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC--hhcccceEEEEccCCccCCCCCHH
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN--QETFTRISGYCEQNDIHSPYVTVY 764 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~~~~~~~~~~v~q~~~~~~~ltv~ 764 (1230)
++++||||+++.||++||+|||||||||+|++|++...|. +|.|.+||.+.. +...++.+|.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 4999999999999999999999999999999999988764 799999998753 346788999999888999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCC
Q 000907 765 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844 (1230)
Q Consensus 765 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD 844 (1230)
|||.|.+.+. +....+.+++.+++.+.++|.++.|+++| ++|.|+||||+|||||++||++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999998876 34556677889999999999999999976 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 845 ARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 845 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+...+.+.++++.++|++||++||.-+ |+-.+.|+
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDr 202 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDR 202 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhhe
Confidence 99999999999999888999999999865 77778898
No 60
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.2e-36 Score=345.11 Aligned_cols=199 Identities=27% Similarity=0.401 Sum_probs=172.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 588899988763 35799999999999999999999999999999999998765 479999999986
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|++.+++.+||+||+.+.+.++. ....+..++++++++.+++.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2456789999999999999999999998765432 233344556789999999988877765 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.+..|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~ 207 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDR 207 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999877999999999987 66677787
No 61
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=349.73 Aligned_cols=176 Identities=26% Similarity=0.359 Sum_probs=142.5
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.++ +++.+++++|+.+.+|+.+||+||||+|||||||+|+|...+ .+|+|.+.-.
T Consensus 320 ~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~- 384 (530)
T COG0488 320 LVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGET- 384 (530)
T ss_pred eeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCc-
Confidence 3588999988763 236799999999999999999999999999999999997654 3788876431
Q ss_pred cChhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHH
Q 000907 739 KNQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNGLSTE 816 (1230)
Q Consensus 739 ~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgG 816 (1230)
-.+||..|+. .+.+..|+.|++.-.. +... +..+...+..+++.... .+. ++.||||
T Consensus 385 -------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~-----v~~LSGG 443 (530)
T COG0488 385 -------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKP-----VGVLSGG 443 (530)
T ss_pred -------eEEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCc-----hhhcCHh
Confidence 2589999986 4457779999886421 1111 44578889999987533 333 4579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||.|+.+|+.++.+|.+|+|||||+.||..+...+-+.|.+. .-|||+||||..
T Consensus 444 Ek~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~ 497 (530)
T COG0488 444 EKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY 497 (530)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH
Confidence 999999999999999999999999999999999999999765 459999999974
No 62
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=349.74 Aligned_cols=200 Identities=27% Similarity=0.374 Sum_probs=173.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 377888887762 235699999999999999999999999999999999998775 479999999986
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+|||+|+..++|++||+||+.|+...+ ...+.+..++++++++.++|.+..++.. ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 223578999999999999999999999986532 2344555677899999999998877764 57999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++||++. ++.++.|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~ 204 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADR 204 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 999999999986 67788887
No 63
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.9e-36 Score=328.70 Aligned_cols=200 Identities=23% Similarity=0.319 Sum_probs=167.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 578888887631 124699999999999999999999999999999999998765 4799999998753
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ..+++.++|++|++.+++.+||.||+.+....+. ......+++++++++.+++.+..++.. ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999999999999999988754321 223344566889999999987766653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 207 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHR 207 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777999999999986 45555665
No 64
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-36 Score=345.02 Aligned_cols=202 Identities=22% Similarity=0.302 Sum_probs=171.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .+.+.+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6788998887410 1134799999999999999999999999999999999998775 4799999999864
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...++.+||++|+..+++..||+||+.+....+ ...+++.++++.++++.+||.+..|.. +++||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 3 124678999999999999999999999875432 234455567789999999999887766 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+|||||+.+|++|+|||||++||+.++..+++.|+++.++ |.|||++||++. .+.+..|+
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~ 210 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDC 210 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999765 999999999976 56677787
No 65
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=346.87 Aligned_cols=199 Identities=25% Similarity=0.373 Sum_probs=173.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 578899988762 35699999999999999999999999999999999998775 479999999986
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+|||+|+..++|++||.||+.|+...+ ...+.+.+++++++++.+++.+..++. ++.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 53 233578999999999999999999999986543 234555667899999999999887766 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.++.|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~ 206 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDT 206 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999987 67788888
No 66
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.6e-36 Score=347.34 Aligned_cols=199 Identities=26% Similarity=0.379 Sum_probs=173.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 478889988763 35699999999999999999999999999999999998765 479999999886
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...+|.+|||+|+..++|++||+||+.|+...+ .....+.+++++++++.++|.+..++. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 234578999999999999999999999986543 234455667899999999999888766 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~ 204 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADR 204 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999997 67788887
No 67
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.5e-36 Score=346.38 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=173.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEE--EEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 737 (1230)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. + |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--GLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCCEEEEECCE
Confidence 578889988763 346999999999999999999999999999999999987753 6 99999998
Q ss_pred ecCh-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 738 PKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 738 ~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
+... ...++.+|||+|+..++|.+||+||+.|+...+ .....+.+++++++++.++|.+..++.. ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 8643 224578999999999999999999999986543 2344555677899999999998888764 579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dr 208 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADK 208 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998765 799999999987 56777887
No 68
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-36 Score=330.15 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=166.1
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677877662 34699999999999999999999999999999999998765 37999999987532
Q ss_pred ------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 742 ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 742 ------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
..+++.++|++|++.+++.+||.||+.+...... .....+..++++++++.+++.+..++.+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2345679999999999999999999988643221 1233444566888999999987766653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~ 206 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADR 206 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999998764 899999999987 45666776
No 69
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=9.9e-37 Score=296.09 Aligned_cols=181 Identities=27% Similarity=0.340 Sum_probs=156.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-hcccceEEEEccCCccCCCCCHHHHHHH
Q 000907 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLY 769 (1230)
Q Consensus 691 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 769 (1230)
..++.|++||++||+||||||||||||+|+|...|. +|+|++||.+... ....|-+++++|+.++|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC--CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 568899999999999999999999999999988764 8999999998654 3466789999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHH
Q 000907 770 SAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849 (1230)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~ 849 (1230)
+..-.+ +.+ .+.+++++.++...||.++.+++. .+||||||||+++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643211 222 344567899999999999988874 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 850 VVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 850 ~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++..++.++++ ++.|++++||+|+ +.-..-|+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~ 199 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADR 199 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhc
Confidence 99999999975 4899999999998 45555555
No 70
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-37 Score=307.02 Aligned_cols=197 Identities=25% Similarity=0.340 Sum_probs=171.1
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChh----cccceEEEEcc
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQ 753 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q 753 (1230)
++.+++++++++++||+++++||+++++|||||||||.+.++.|...++ +|.|.+||.+++.. ..+..+||+||
T Consensus 9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~RArlGigYLpQ 86 (243)
T COG1137 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKRARLGIGYLPQ 86 (243)
T ss_pred hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCcccccCChHHHhhcCcccccc
Confidence 3344567789999999999999999999999999999999999987764 79999999987542 23456899999
Q ss_pred CCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000907 754 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 833 (1230)
Q Consensus 754 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~i 833 (1230)
++..|-.+||+||+......+.. +....+++.+++++++.+++.|+++... ..||||||||+.|||||+.+|+.
T Consensus 87 E~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 87 EASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCE
Confidence 99999999999999887666532 2233456667889999999999998763 36999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcC
Q 000907 834 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 883 (1230)
Q Consensus 834 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~ 883 (1230)
++||||++|+||.+...|.++++.+++.|.-|++|-|.-+ |..+..|++
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRa 209 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRA 209 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheE
Confidence 9999999999999999999999999999999999999987 667888884
No 71
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-36 Score=323.39 Aligned_cols=197 Identities=28% Similarity=0.388 Sum_probs=164.3
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCc
Confidence 5677777652 35699999999999999999999999999999999998765 47999999987643
Q ss_pred -hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
...++.++|++|++.+++.+|++||+.+..... ........+.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 223567999999999999999999998864332 1233344556788999999987766653 4699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+..|+
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 200 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADR 200 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999876 4899999999986 45556666
No 72
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.6e-36 Score=324.25 Aligned_cols=201 Identities=29% Similarity=0.409 Sum_probs=164.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 3567888776310 0115699999999999999999999999999999999998765 4799999998754
Q ss_pred hh-------cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 741 QE-------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 741 ~~-------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
.. ..++.++|++|++.+++.+||+||+.+....+. ......++.++++++.+|+.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 21 124579999999999999999999998754431 223334556889999999987766653 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++.. + +..|+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 209 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADR 209 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcE
Confidence 99999999999999999999999999999999999999999999876 58999999999863 3 36665
No 73
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.9e-36 Score=343.79 Aligned_cols=199 Identities=23% Similarity=0.334 Sum_probs=173.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999988763 34699999999999999999999999999999999998775 479999999986
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+|||+|+..++|.+||.||+.|+...+ .....+.+++++++++.++|.+..++.. .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 234578999999999999999999999975433 2344455667899999999998887764 57999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|||||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDr 214 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDR 214 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 999999999986 67788887
No 74
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.2e-35 Score=339.95 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=171.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 588999988763 35799999999999999999999999999999999998775 379999999986
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|+..+++.+||.||+.+.+.... ....+..++++++++.++|.+..++.+ ++|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 42 2456789999999999999999999987654432 223334456788999999998877775 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+.+ ++.+..|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~ 241 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 241 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999878999999999986 66677787
No 75
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-35 Score=322.45 Aligned_cols=199 Identities=26% Similarity=0.384 Sum_probs=164.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~- 69 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT- 69 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc-
Confidence 567777766310 0115799999999999999999999999999999999998764 4799999998764
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ +.||||||||+
T Consensus 70 -~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred -cccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 245679999999999999999999988654331 233344566889999999987666653 47999999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+..|+
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADR 201 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999864 4899999999986 45556666
No 76
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=342.07 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=171.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 367888887662 35699999999999999999999999999999999998765 379999999986
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.++||+|+..++|.+||.||+.|....+.. .....++..++++++++.++|.+..++.. ..|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 43 22346799999999999999999999987543211 12344555677899999999988777663 5799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+.|+
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dr 206 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADR 206 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999986 66777887
No 77
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-35 Score=320.54 Aligned_cols=196 Identities=23% Similarity=0.392 Sum_probs=165.2
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH
Confidence 5677777652 34699999999999999999999999999999999998764 47999999987643
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ++||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345679999999999999999999988654432 223344566889999999987666553 47999999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 197 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDR 197 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhE
Confidence 9999999999999999999999999999999999998777899999999986 45555665
No 78
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-36 Score=308.01 Aligned_cols=201 Identities=26% Similarity=0.319 Sum_probs=165.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++.+|++..+... .....+|+|||+++.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~---------~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGG---------KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCC---------cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 47888998877531 1112599999999999999999999999999999999998775 479999999875
Q ss_pred Chh----cccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCC
Q 000907 740 NQE----TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~----~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~ 812 (1230)
... .+.+.+.+|+||+ .+.|..||++.|.-+... ....+. .+++.++++.+||.+.. +++ +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 432 4678899999998 578999999998766443 122332 33389999999997543 332 568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.++.++ |.|.|+++||.+ -+..+.|+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdR 211 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDR 211 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhh
Confidence 9999999999999999999999999999999999999999999999754 889999999987 45667787
No 79
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-35 Score=341.60 Aligned_cols=199 Identities=24% Similarity=0.349 Sum_probs=172.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999988762 34699999999999999999999999999999999998775 379999999886
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+|||+|+..++|++||.||+.|+...+ .....+..++++++++.+++.+..++. +++||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999976533 234455567789999999999887765 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|||||||+|||..++..+.+.|+++.+ .|.|+|++|||+. ++..+-|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDr 219 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGR 219 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998865 4899999999987 67788887
No 80
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.6e-35 Score=321.15 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=166.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 56788887662 124699999999999999999999999999999999998764 4799999998764
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ..+++.++|++|++.+++.+|+.||+.+....+ .......+++++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 124567999999999999999999998875432 1233344566889999999987666553 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 206 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHR 206 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999998777999999999986 55555675
No 81
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.5e-35 Score=322.04 Aligned_cols=208 Identities=36% Similarity=0.582 Sum_probs=171.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeEEEEEEECCeec
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR-GYITGNITISGYPK 739 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 739 (1230)
+.|+|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5688888877421 0136799999999999999999999999999999999998651 12479999999887
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE-VMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.....++.++|++|++.+++.+||+||+.+......+.........+.+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 654567789999999999999999999998754432221122222334555 88888888766654 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.+|+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCE
Confidence 9999999999999999999999999999999999999998777999999999997788888887
No 82
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-35 Score=321.38 Aligned_cols=198 Identities=28% Similarity=0.370 Sum_probs=165.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecC
Confidence 35677777652 35699999999999999999999999999999999998765 4799999998753
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ...++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2345679999999999999999999988654431 223334556889999999987766654 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++||+||+.+|++++|||||+|||+.+++.+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~ 201 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDR 201 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998776 899999999987 45556676
No 83
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.9e-35 Score=320.72 Aligned_cols=198 Identities=25% Similarity=0.358 Sum_probs=164.8
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEccc
Confidence 5677777652 124699999999999999999999999999999999998764 47999999987532
Q ss_pred ------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 742 ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 742 ------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
...++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+++.+..++.. ++|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1245679999999999999999999988754321 233444556889999999987766653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~ 205 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHR 205 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998777999999999985 44445565
No 84
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1e-35 Score=338.29 Aligned_cols=188 Identities=28% Similarity=0.383 Sum_probs=162.9
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh--hcccceEEEEccCCccCCCC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYV 761 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~l 761 (1230)
+++.+|+|+||++++||++||+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 346799999999999999999999999999999999998765 47999999987642 23456799999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 762 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 762 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
||+||+.+.+.++. ....+.+++++++++.+++.+..++.+ +.||||||||++||+||+.+|++|+|||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999998765432 233444566889999999988777764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 842 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+.++..+++.|++++++|+|||++||++. ++.+..|+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~ 193 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDR 193 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999877999999999986 66667777
No 85
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.5e-35 Score=319.43 Aligned_cols=197 Identities=26% Similarity=0.388 Sum_probs=164.6
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCc
Confidence 5677877653 34699999999999999999999999999999999998765 47999999987643
Q ss_pred h-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
. ..++.++|++|++.+++..|++||+.+....+ ....++.+++++++++.+++.+..+..+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 1 23467999999999988999999998864432 1233444566888999999987766654 4799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~ 200 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADR 200 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 99999999999999999999999999999999999998764 899999999986 45555665
No 86
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=342.32 Aligned_cols=199 Identities=26% Similarity=0.369 Sum_probs=170.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 377888887762 35699999999999999999999999999999999998765 379999999886
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+||++|+..+++.+||+||+.|....+ .....+.+++++++++.++|.+..++.. .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 223467999999999999999999999875433 1234445567899999999988777664 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++....|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~ 203 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 203 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998764 899999999986 66777787
No 87
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.1e-35 Score=334.54 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=168.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478888888762 35699999999999999999999999999999999998765 379999999875
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|++.+++.+||+||+.+.+... .....+..++++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 234678999999999999999999998754432 1233334456788999999988777664 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~ 204 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 204 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999878999999999987 56667777
No 88
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.5e-35 Score=320.55 Aligned_cols=202 Identities=27% Similarity=0.395 Sum_probs=167.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .....+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 5678888876310 0112699999999999999999999999999999999998765 3799999998764
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ..+++.++|++|++.+++.+||.||+.+....+ .....+..+.++++++.+++.+..++.+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 2 234678999999999999999999998765432 1233444567889999999987776653 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 205 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDR 205 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999998777999999999986 55566676
No 89
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2e-35 Score=338.64 Aligned_cols=189 Identities=23% Similarity=0.267 Sum_probs=164.3
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcc----cceEEEEccCC
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETF----TRISGYCEQND 755 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~----~~~~~~v~q~~ 755 (1230)
++.+.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.. ... ++.++||+|+.
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3556799999999999999999999999999999999998775 48999999998653 222 57899999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 756 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
.++|.+||+||+.|..... ....++..+++.++++.+||.+..++.. ..|||||||||+|||||+.+|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999876543 2345556678899999999988777664 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.++..+.+.++++.++ |+|||++||+.. ++....|+
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~dr 199 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDR 199 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999998754 899999999987 45667787
No 90
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=291.78 Aligned_cols=182 Identities=27% Similarity=0.409 Sum_probs=163.0
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
+.+|+|+|++|.+||.++++||||||||||||+++|..+| ..|+|.+||.++.... ..-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 4599999999999999999999999999999999998876 4799999999875432 23489999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCH
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~ 845 (1230)
|+.|+..++ ...+.++.+++.+++...||.+..++.+ -+||||||||+.|||||+.+|++|+||||.++||.
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 4677888899999999999999887764 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHH
Q 000907 846 RAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEA 879 (1230)
Q Consensus 846 ~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~ 879 (1230)
-++++++++|-++. +.|+.++++||+....+|-.
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfla 200 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhh
Confidence 99999999998875 56999999999987666643
No 91
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.5e-35 Score=323.55 Aligned_cols=200 Identities=28% Similarity=0.363 Sum_probs=165.0
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCC
Confidence 4677777652 34699999999999999999999999999999999998764 47999999987643
Q ss_pred h---c-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 742 E---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE-------VNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 742 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
. . .++.++|++|++.+++.+||+||+.+....+.... .......+.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 1 1 23568999999999999999999988654321110 012334556889999999987666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 212 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADR 212 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 479999999999999999999999999999999999999999999998777999999999987 55566776
No 92
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-35 Score=337.99 Aligned_cols=202 Identities=23% Similarity=0.301 Sum_probs=169.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++... .+++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5788998877310 1135799999999999999999999999999999999998765 4799999998864
Q ss_pred h---h---cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q---E---TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~---~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. . ..++.+||++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1 23567999999999999999999999875433 1233444567889999999988777653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~ 210 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDR 210 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998764 899999999986 56667787
No 93
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-35 Score=321.93 Aligned_cols=202 Identities=27% Similarity=0.385 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 367888888763 24699999999999999999999999999999999998764 479999999876
Q ss_pred Chh-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQE-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
... ..++.++|++|++.+++.+||.||+.+....+.. .........+.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 431 2346799999999999999999999886543211 00122333456788999999987666653 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 206 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADR 206 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999986 45566776
No 94
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-35 Score=318.20 Aligned_cols=182 Identities=29% Similarity=0.378 Sum_probs=153.7
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCc-cCCCCCHH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDI-HSPYVTVY 764 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~ltv~ 764 (1230)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+......++.++|++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4699999999999999999999999999999999998765 47999999988654445667999999974 34467999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCC
Q 000907 765 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844 (1230)
Q Consensus 765 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD 844 (1230)
||+.+..... . . ..++++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D-A---GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C-c---cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 1 1245788999999988777654 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 845 ARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 845 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.++..+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 195 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDR 195 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999998777999999999986 34455665
No 95
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.2e-35 Score=322.07 Aligned_cols=197 Identities=27% Similarity=0.380 Sum_probs=164.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 5677777652 35699999999999999999999999999999999998765 47999999987532
Q ss_pred ---hc-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 742 ---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 742 ---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. .++.++|++|++.+++.+||+||+.+....+. .......+.++++++.+++.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 11 23568999999999999999999987643321 223334456788999999987766653 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 202 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDR 202 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998877999999999987 56666776
No 96
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-35 Score=329.74 Aligned_cols=194 Identities=24% Similarity=0.281 Sum_probs=162.6
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hc----ccceEEE
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ET----FTRISGY 750 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~----~~~~~~~ 750 (1230)
+..+.++++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .. .++.++|
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 444456677899999999999999999999999999999999998765 37999999987542 11 2357999
Q ss_pred EccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000907 751 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVAN 830 (1230)
Q Consensus 751 v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~ 830 (1230)
++|++.+++.+||.||+.+..... ........++++++++.+++.+..++.+ +.||||||||++||+||+.+
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998865432 1223344556888999999987777664 47999999999999999999
Q ss_pred CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 831 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 831 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~ 230 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDR 230 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999999999999998754 899999999986 45566676
No 97
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=316.79 Aligned_cols=200 Identities=25% Similarity=0.341 Sum_probs=172.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-+.+++++|+++. +..+|+|+|+++++||.++|+|+||||||||+++|+|..++ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 3678999998741 25799999999999999999999999999999999998875 369999999985
Q ss_pred C----hhcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 740 N----QETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~----~~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ....++.+|||+|++. .+..-||.|.+.|+.... ..+.++.+++++++++.+++.+.+++. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 3567889999999974 345569999999986432 345566788999999999999987765 45799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|+|++|||.. .+.+..|+
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~ 208 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADR 208 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCE
Confidence 99999999999999999999999999999999999999999999877 799999999875 45555666
No 98
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.6e-35 Score=317.43 Aligned_cols=198 Identities=25% Similarity=0.339 Sum_probs=164.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCc
Confidence 5677777653 24699999999999999999999999999999999998764 47999999987631
Q ss_pred -----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 742 -----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 742 -----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
...++.++|++|++.+++.+|+.||+.+...... .....+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2346789999999999999999999987642111 1233344566788999999987666653 579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~ 204 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADR 204 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999877999999999986 45555665
No 99
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-35 Score=284.48 Aligned_cols=201 Identities=26% Similarity=0.378 Sum_probs=166.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++.++++..+. ...+...||++|++.+++||.+||+|||||||||||-+++|+..+ .+|+|.+.|++..
T Consensus 7 i~~~~l~ktvg---------~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~ 75 (228)
T COG4181 7 IEVHHLSKTVG---------QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLH 75 (228)
T ss_pred eehhhhhhhhc---------CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchh
Confidence 45556655442 123556899999999999999999999999999999999998765 4799999998753
Q ss_pred h-------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 741 Q-------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 741 ~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
. .-+.+.+|+|+|...+.|++|..||+.....++... ..+..+...+.++.+||.+..+.+ +.+|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHY-----PAQL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccC-----cccc
Confidence 2 124578999999999999999999999988877532 223344578899999999877766 4589
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||+.. ...|+
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA--~Rc~R 215 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA--ARCDR 215 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH--Hhhhh
Confidence 99999999999999999999999999999999999999999988764 599999999999733 44454
No 100
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.3e-35 Score=316.19 Aligned_cols=193 Identities=28% Similarity=0.391 Sum_probs=162.1
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccc
Confidence 5677777652 34699999999999999999999999999999999998764 47999999987542
Q ss_pred -hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
...++.++|++|++.+++.+||+||+.+....+. . .+++++++++.+++.+..++.+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2345679999999999999999999988654321 1 1345788999999987776653 4699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||++|+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 195 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADR 195 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999998777999999999987 44445565
No 101
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=6.8e-34 Score=319.04 Aligned_cols=204 Identities=20% Similarity=0.331 Sum_probs=166.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++..-. .+...+++|||++++||++||.|-.|-|-+-|+.+|+|..++. +|+|.++|.+.
T Consensus 257 vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~--~G~I~l~G~~v 322 (501)
T COG3845 257 VLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA--SGRILLNGKDV 322 (501)
T ss_pred EEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC--CceEEECCEec
Confidence 477788876432 1246899999999999999999999999999999999987543 49999999985
Q ss_pred ----Ch-hcccceEEEEccCC---ccCCCCCHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 000907 740 ----NQ-ETFTRISGYCEQND---IHSPYVTVYESLLYSAWLRL----SSEVNSKTREMFVEEVMELVELNPLRQALVGL 807 (1230)
Q Consensus 740 ----~~-~~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 807 (1230)
+. ...+..++|||.|. .+.+.+|+.||+.+...-+. ..-.......+..+++++.++.......
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~---- 398 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD---- 398 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----
Confidence 22 23445789999875 46788999999987643221 1123445667788999999988632211
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...+.||||++||+-+||+|.++|++|+..+||.|||..+.+.|.+.|.+.+++|+.|++++-+.. |++++.|+
T Consensus 399 ~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDr 472 (501)
T COG3845 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDR 472 (501)
T ss_pred cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhhe
Confidence 124679999999999999999999999999999999999999999999999999999999999987 89999998
No 102
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.1e-35 Score=339.41 Aligned_cols=202 Identities=25% Similarity=0.348 Sum_probs=170.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 377888888762 45799999999999999999999999999999999998765 479999999876
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|+..+++.+||+|++.+........ ........++++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 345678999999999989999999998753211100 0012234567899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+..|+
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adr 208 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDE 208 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999987 56677787
No 103
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-34 Score=318.55 Aligned_cols=196 Identities=25% Similarity=0.358 Sum_probs=163.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEc
Confidence 37889999877310 0124699999999999999999999999999999999998764 479999999876
Q ss_pred Chh------cc-cceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 740 NQE------TF-TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~------~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
... .. ++.++|++|++.+++.+|++||+.+....+ .....+.+++++++++.+|+.+..++. ++.
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 421 12 257999999999999999999998865432 122334456788999999998766655 347
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCH
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSI 874 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~ 874 (1230)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++..
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999999999999999875 58999999999863
No 104
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.1e-35 Score=317.19 Aligned_cols=186 Identities=28% Similarity=0.374 Sum_probs=155.4
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCc-cCCCC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDI-HSPYV 761 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 761 (1230)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 5699999999999999999999999999999999998765 47999999987532 234567999999974 36678
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 762 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 762 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
|++||+.+....+ ........+.++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764332 1223334456788999999987666553 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 842 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+.++..+.+.|++++++|+|||++||++. ++....|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 203 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADR 203 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999998877999999999986 44455665
No 105
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=9.1e-35 Score=330.08 Aligned_cols=198 Identities=25% Similarity=0.367 Sum_probs=169.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++++. ++.+|+|+||++++||++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 367888887762 35799999999999999999999999999999999998765 479999999876
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|++.+++.+||.||+.+.+.++. ...++..++++++++.+|+.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHH
Confidence 43 2345789999999999999999999998765532 233344556889999999998877764 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+++|++|+|||||+|||+.+++.+++.|+++++ ++|||++||++. ++.+..|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~ 201 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDR 201 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999864 799999999987 66677787
No 106
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-35 Score=320.75 Aligned_cols=202 Identities=25% Similarity=0.309 Sum_probs=166.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5677888766310 0113699999999999999999999999999999999998765 4799999998764
Q ss_pred hh------cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 QE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 21 235679999999999999999999988654331 233344556889999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 210 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDR 210 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998765 899999999986 55666776
No 107
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-34 Score=316.20 Aligned_cols=199 Identities=24% Similarity=0.309 Sum_probs=164.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 56788887762 124699999999999999999999999999999999998764 4799999998753
Q ss_pred h---h---cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q---E---TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~---~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. . .+++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 2 1 24568999999998888999999998865432 123334445678899999998766654 34799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|.|+|++||++. ++-+..|+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYR 206 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777899999999986 34445565
No 108
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=321.07 Aligned_cols=196 Identities=25% Similarity=0.339 Sum_probs=164.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 56788887652 24699999999999999999999999999999999998765 3799999998764
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
. ..+.++|++|++.+++.+||.||+.+....+ .....+..++++++++.+++.+..++. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2345899999999999999999998764332 123334456688999999998766654 34799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.+..|+
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~ 198 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATE 198 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999854 5899999999987 55666776
No 109
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-35 Score=322.80 Aligned_cols=201 Identities=26% Similarity=0.320 Sum_probs=162.5
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccc
Confidence 4677776652 114699999999999999999999999999999999998764 47999999987542
Q ss_pred ------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 742 ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-----SSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 742 ------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
...++.++|++|++.+++.+||+||+.+...... ..........++++++++.+++.+..++. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 2345679999999999999999999987532100 00111123345678899999998766654 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~ 214 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADR 214 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998754 899999999987 45566676
No 110
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.4e-35 Score=318.42 Aligned_cols=198 Identities=23% Similarity=0.285 Sum_probs=162.3
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCeEEEEEEECC
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK-----TRGYITGNITISG 736 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~-----~~~~~~G~i~~~g 736 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEECC
Confidence 5677777652 346999999999999999999999999999999999987 43 479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.++ .+||+||+.+....+. .....+.+++++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23456799999998888 7999999988654321 11222234567889999999876555420 25
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. ++.+..|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~ 209 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADR 209 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999999776 99999999987 55566776
No 111
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-34 Score=316.12 Aligned_cols=199 Identities=26% Similarity=0.392 Sum_probs=164.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 356777776531 125699999999999999999999999999999999998765 4799999998764
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ..+++.++|++|++.+++.+|++||+.+....+. .......++++++++.+++.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 2 2345679999999999999999999988654331 223334456789999999987766653 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 201 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDR 201 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999875 699999999987 45556676
No 112
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=9.7e-35 Score=308.53 Aligned_cols=179 Identities=26% Similarity=0.343 Sum_probs=150.6
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-----hcccceEEEEccCCc-cC
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-----ETFTRISGYCEQNDI-HS 758 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 758 (1230)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 35699999999999999999999999999999999998765 47999999987531 134567999999973 23
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
...||+||+.+..... .....+..+.++++++.+++.+..++.+ +.||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998864322 1233334456788999999987766653 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 839 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999998877999999999985
No 113
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.5e-34 Score=315.16 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=163.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .+.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 5678888776310 1124699999999999999999999999999999999998765 4799999998753
Q ss_pred hh---c---cc-ceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 741 QE---T---FT-RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 741 ~~---~---~~-~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+|+.+..++.. +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 579999999999989999999988654321 223333456788999999987666553 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ +..|+
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~ 210 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDR 210 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCE
Confidence 999999999999999999999999999999999999999999998754 899999999986 33 33465
No 114
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.2e-34 Score=312.48 Aligned_cols=186 Identities=24% Similarity=0.360 Sum_probs=156.9
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC---h----hcccceEEEEccCCcc
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN---Q----ETFTRISGYCEQNDIH 757 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~ 757 (1230)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. . ...++.++|++|++.+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 35699999999999999999999999999999999998765 4799999998742 1 1245679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEe
Q 000907 758 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 758 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 837 (1230)
++.+|++||+.+..... ........+.++++++.+++.+..++.+ .+||||||||++||+||+.+|++|+||
T Consensus 88 ~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 88 IENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred ccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999865432 1233344566889999999987766653 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||+.++..+.+.|+++.++|.|+|+++|++.. .+..|+
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~--~~~~d~ 202 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV--AKQADR 202 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--HhhcCE
Confidence 9999999999999999999987779999999999862 244454
No 115
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.1e-34 Score=316.68 Aligned_cols=195 Identities=28% Similarity=0.405 Sum_probs=159.8
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+ +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGY-------------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeec-------------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCC
Confidence 567777655 234699999999999999999999999999999999998765 47999999987542
Q ss_pred h---c-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCHH
Q 000907 742 E---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 742 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. . .++.++|++|++.+++.+|++||+.+...... .....+.++++++.+ ++.+..++. ++.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHH
Confidence 1 1 24579999999999999999999988654321 122234566778877 466555554 3479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADR 201 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccE
Confidence 999999999999999999999999999999999999999998777899999999986 45566676
No 116
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-34 Score=319.20 Aligned_cols=197 Identities=26% Similarity=0.361 Sum_probs=164.1
Q ss_pred EEeeeEEEEecCcccccccccCCc-eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDK-LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
+++|+++.+. + +.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (242)
T cd03295 2 EFENVTKRYG-------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIR 66 (242)
T ss_pred EEEEEEEEeC-------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcC
Confidence 4677777653 2 4699999999999999999999999999999999998765 4799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP--LRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++|++|++.+++.+||+||+.+....+ ........+.++++++.+++.+ ..++. ++.|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCH
Confidence 2 234567999999999999999999998865432 1233444566889999999985 55544 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~ 205 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADR 205 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 899999999986 45566676
No 117
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.2e-34 Score=317.74 Aligned_cols=199 Identities=21% Similarity=0.335 Sum_probs=166.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 56788887652 34699999999999999999999999999999999998764 4799999998764
Q ss_pred h-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 741 Q-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++|++|++.+++.+||.||+.+...... ........+.++++++.+|+.+..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2345679999999999999999999987542111 1233444566889999999987666553 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 205 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASR 205 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998777999999999986 45556676
No 118
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.2e-34 Score=320.06 Aligned_cols=199 Identities=25% Similarity=0.343 Sum_probs=166.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67888887762 24699999999999999999999999999999999998764 4799999998753
Q ss_pred h-----------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 741 Q-----------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 741 ~-----------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
. ...++.++|++|++.+++.+|+.||+.+...... ........+.++++++.+|+.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 2345679999999999999999999987532111 123334456688899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~ 213 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADR 213 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 3579999999999999999999999999999999999999999999998877999999999986 45566676
No 119
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.7e-35 Score=316.42 Aligned_cols=187 Identities=27% Similarity=0.413 Sum_probs=153.6
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccC--CCCCH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHS--PYVTV 763 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv 763 (1230)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 5699999999999999999999999999999999998765 3799999998653 3456799999998763 34799
Q ss_pred HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 764 YESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 764 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
+||+.+....... .........++++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875322110 00111233456889999999987666553 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 201 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDR 201 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999998777999999999986 45556676
No 120
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=324.91 Aligned_cols=203 Identities=23% Similarity=0.310 Sum_probs=166.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++.. ....+.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 6788998877411 00124699999999999999999999999999999999998765 4799999998864
Q ss_pred h-----hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCC
Q 000907 741 Q-----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN--PLRQALVGLPGVNG 812 (1230)
Q Consensus 741 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~ 812 (1230)
. ...++.+||++|++. .+...||+||+.+..... ....++..++++++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 234678999999863 334579999999865432 234455556789999999996 555554 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++....|+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 214 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADR 214 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 45566787
No 121
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.8e-35 Score=321.55 Aligned_cols=202 Identities=23% Similarity=0.277 Sum_probs=163.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 46777776652 134699999999999999999999999999999999998765 4799999998753
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-----SSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
. ..+++.++|++|++.+++.+||+||+.+...... .........+++++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999999999999999976421100 00011223345678899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+..|+
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~ 215 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADR 215 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 3579999999999999999999999999999999999999999999998654 899999999987 45566776
No 122
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-35 Score=301.18 Aligned_cols=196 Identities=27% Similarity=0.356 Sum_probs=168.7
Q ss_pred ccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccC
Q 000907 679 RGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQN 754 (1230)
Q Consensus 679 ~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~ 754 (1230)
+.+++++..+++|||+++++||+++|+||||||||||+|+|+|.++|. +|+|.++|.++.. ...+..++--+|.
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC--CceEEECCcccCCCCHHHHHhccceeeccc
Confidence 334567889999999999999999999999999999999999998864 7999999998653 2234567888999
Q ss_pred CccCCCCCHHHHHHHHHHhcC--------CCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHH
Q 000907 755 DIHSPYVTVYESLLYSAWLRL--------SSE-VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 825 (1230)
Q Consensus 755 ~~~~~~ltv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~ 825 (1230)
..+|+.|||.||+..+...+. +.. ...++..+++.++++.+||.+.+|...| +||+||||||.|||
T Consensus 88 ~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIAr 162 (250)
T COG0411 88 TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIAR 162 (250)
T ss_pred ccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHH
Confidence 999999999999998755331 111 1234556778999999999999999865 59999999999999
Q ss_pred HHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 826 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 826 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+++|++|+||||.+||.+..+.++.+.|+++.+ .|.||+++.|+-. -++.+.|+
T Consensus 163 ALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dr 219 (250)
T COG0411 163 ALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADR 219 (250)
T ss_pred HHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccE
Confidence 99999999999999999999999999999999987 4799999999987 57788888
No 123
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.1e-34 Score=321.14 Aligned_cols=200 Identities=21% Similarity=0.306 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 478899988762 35699999999999999999999999999999999998765 479999999875
Q ss_pred Chh------cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 740 NQE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 740 ~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
... ..++.++|++|+..+++.+||.||+.+...... ........+.++++++.+++.+..++.+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 235679999999999999999999987643211 1233334456788999999987776653 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 213 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADH 213 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCE
Confidence 999999999999999999999999999999999999999999998755 899999999975 45566776
No 124
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-34 Score=308.31 Aligned_cols=187 Identities=23% Similarity=0.330 Sum_probs=159.2
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 46677877652 35699999999999999999999999999999999998765 4799999998754
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ...++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.+|+.+..++. ++.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999999999999999988654321 1 1235578899999998766655 347999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 9999999999999999999999999999999999999998777899999999976
No 125
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-34 Score=311.32 Aligned_cols=196 Identities=35% Similarity=0.477 Sum_probs=162.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++| +++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccc
Confidence 35677777652 346999999999999 9999999999999999999998765 4799999998753
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ...++.++|++|++.+++.+||.||+.+....+. ....+..+.++++++.+++.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 2 2345679999999999999999999988654431 222333456788999999987766653 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~ 198 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQ 198 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999875 599999999986 34455666
No 126
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-35 Score=345.08 Aligned_cols=201 Identities=26% Similarity=0.411 Sum_probs=166.0
Q ss_pred CceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCe
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 737 (1230)
...++|+||++.|+.+ .+..+|+|+||+|+|||++||+||||+||||+.++|...+.| .+|+|.+||.
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCe
Confidence 4579999999999864 356799999999999999999999999999999999998876 4899999999
Q ss_pred ecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCC
Q 000907 738 PKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM-----FVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 738 ~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
|+. ...+++.+|+|.|+|.+|. -||+||+.|+.. ..+.++..+ .+.+.+. ++.+-.||.+|..+
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCcc
Confidence 864 3567899999999999986 599999999743 222222211 1222222 45667899999765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
. +||||||||++|||||++||+||+|||.||+||+++...|.+.|.+.. +++|||++.|..|. .+.-|+
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLST--V~~Ad~ 671 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLST--VRHADQ 671 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhhH--hhhccE
Confidence 4 699999999999999999999999999999999999999999998875 46999999998873 344444
No 127
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-34 Score=321.56 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 378899988763 123599999999999999999999999999999999998765 479999999876
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|++. .++..||.||+.|..... .......+++++++++.+++.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 42 234567999999863 445689999998864321 2233444566889999999987777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~ 207 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQ 207 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999986 45567787
No 128
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-34 Score=317.48 Aligned_cols=191 Identities=21% Similarity=0.290 Sum_probs=162.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 588999998773 24699999999999999999999999999999999998765 379999999765
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
. ..++.++|++|++.+++.+||+||+.+... . ..+++++++++.+++.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999999998999999987421 0 1234578899999998766655 3579999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+.+..|+
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~ 203 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADR 203 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999864 5899999999987 45566776
No 129
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-34 Score=332.92 Aligned_cols=189 Identities=23% Similarity=0.274 Sum_probs=161.5
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hc----ccceEEEEccCC
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ET----FTRISGYCEQND 755 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~----~~~~~~~v~q~~ 755 (1230)
++...+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.. .. .++.++|++|+.
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 4556799999999999999999999999999999999998765 37999999988642 11 235799999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 756 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.. +.||||||||++|||||+.+|++||
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLL 187 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILL 187 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999998765431 233444567889999999988777653 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++..+.|+
T Consensus 188 LDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dr 234 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDR 234 (400)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999865 5899999999986 56677787
No 130
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=295.53 Aligned_cols=197 Identities=28% Similarity=0.406 Sum_probs=160.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|++..| ++.++|++||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 5666666544 567899999999999999999999999999999999998765 3799999999875
Q ss_pred h----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000907 741 Q----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-LNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++||||....||.+||+|||..++..+.. +......++++.+.+- |.+..+.+.| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 3 34567899999999999999999999987654422 1111222667777764 4555555544 5999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||-++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.+... ...+.-|+
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr 206 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADR 206 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCE
Confidence 9999999999999999999999999999999999999999999865 779988887655 34456666
No 131
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=316.81 Aligned_cols=199 Identities=28% Similarity=0.392 Sum_probs=165.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67788887652 34699999999999999999999999999999999998764 4799999998764
Q ss_pred h----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. ...++.++|++|++.+++.+||.||+.+....+. ....++.+.+++++++.+++.+..+.. .+.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 1235679999999999999999999987643221 122334456688999999998766554 3579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. ++.+..|+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~ 206 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCER 206 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999998777999999999985 56666776
No 132
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.5e-34 Score=314.15 Aligned_cols=203 Identities=24% Similarity=0.280 Sum_probs=160.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5678888776310 0013699999999999999999999999999999999998765 4799999998764
Q ss_pred h------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCCCC
Q 000907 741 Q------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMF-VEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
. ..+++.++|++|++ .+++.+||+||+.+........ ......+. ++++++.+++. +..+.. +
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRY-----P 143 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCC-----c
Confidence 2 23456899999998 4667899999998764432211 11122222 35788999985 445544 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 144 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 215 (228)
T cd03257 144 HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADR 215 (228)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 479999999999999999999999999999999999999999999998765 899999999986 45556676
No 133
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=6.7e-34 Score=312.88 Aligned_cols=197 Identities=26% Similarity=0.374 Sum_probs=162.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 56778877652 34699999999999999999999999999999999998765 3799999998753
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ...++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122357999999998888999999998765432 1233334456788999999987766653 46999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|+++|++.. + +..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~ 201 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDR 201 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCE
Confidence 999999999999999999999999999999999999999874 58999999999873 2 23555
No 134
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-34 Score=323.05 Aligned_cols=202 Identities=26% Similarity=0.293 Sum_probs=165.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... ....+.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYK--------TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCC--------CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 7889999988421 00124699999999999999999999999999999999998765 3799999998763
Q ss_pred h-------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 741 Q-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 741 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
. ...++.+|||+|++ .++ ..||.||+.|..... .....+..++++++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----P 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----c
Confidence 1 23456799999986 344 479999998874322 223444456789999999996 555554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+..|+
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~dr 215 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQ 215 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 999999999987 56677887
No 135
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.2e-34 Score=316.68 Aligned_cols=200 Identities=22% Similarity=0.268 Sum_probs=166.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 478899988763 34699999999999999999999999999999999998764 479999999865
Q ss_pred Ch----------------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-c
Q 000907 740 NQ----------------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-Q 802 (1230)
Q Consensus 740 ~~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~ 802 (1230)
.. ..+++.++|++|++.+++.+||+||+.+...... ........+++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 2345679999999999999999999987532111 123344456788999999997653 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 803 ~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.. .+.||||||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 3579999999999999999999999999999999999999999999999877999999999986 45556676
No 136
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.4e-34 Score=304.75 Aligned_cols=185 Identities=24% Similarity=0.325 Sum_probs=156.6
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSR-------------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEE-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEccc
Confidence 466777655 235799999999999999999999999999999999998765 47999999987532
Q ss_pred --hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 742 --ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 742 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
..+++.++|++|++.+++.+|+.||+.+....+. . + ++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2345678999999888888999999987643321 1 1 234688899999987766654 469999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
|++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999999999999999999999999999998778999999999985
No 137
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-34 Score=323.31 Aligned_cols=204 Identities=24% Similarity=0.304 Sum_probs=165.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. ......+|+|+|+++++||++||+||||||||||+++|+|..++. +|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEeceec
Confidence 37889999987421 011235999999999999999999999999999999999987653 69999998653
Q ss_pred C---------------------------hhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 000907 740 N---------------------------QETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 791 (1230)
Q Consensus 740 ~---------------------------~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1230)
. ....++.+|||+|++ ..+...||+||+.|..... ....++..++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 1 123467899999985 2344579999999865432 23445556678999
Q ss_pred HHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000907 792 MELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870 (1230)
Q Consensus 792 l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 870 (1230)
++.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||
T Consensus 149 l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 149 IELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred HHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 9999996 556654 3579999999999999999999999999999999999999999999999877999999999
Q ss_pred CCCHHHHHHHhc
Q 000907 871 QPSIDIFEAFDA 882 (1230)
Q Consensus 871 ~~~~~i~~~fd~ 882 (1230)
++. .+.+..|+
T Consensus 224 d~~-~~~~~adr 234 (305)
T PRK13651 224 DLD-NVLEWTKR 234 (305)
T ss_pred CHH-HHHHhCCE
Confidence 976 45567777
No 138
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-34 Score=321.85 Aligned_cols=201 Identities=24% Similarity=0.311 Sum_probs=167.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. .+.+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3788999988741 1124599999999999999999999999999999999998765 379999999886
Q ss_pred Ch---hcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|++ ..++..||+||+.|..... ....++..++++++++.+||.+..+... ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 23456899999997 3677789999998864322 2344455567899999999987776653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++.. + ...|+
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dr 209 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999865 9999999999863 4 45776
No 139
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.4e-34 Score=315.34 Aligned_cols=199 Identities=24% Similarity=0.323 Sum_probs=163.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISGY 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 737 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887663 246999999999999999999999999999999999987542 12799999998
Q ss_pred ecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 000907 738 PKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGLP 808 (1230)
Q Consensus 738 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 808 (1230)
+... ...++.++|++|++.+++ .|+.||+.+....+. .....+..+.++++++.+|+. +..++.
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234568999999998888 999999988654331 122334456688899999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 212 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDR 212 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999876 489999999987 55566776
No 140
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-34 Score=314.61 Aligned_cols=199 Identities=24% Similarity=0.319 Sum_probs=165.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEec
Confidence 367888888763 24699999999999999999999999999999999998765 479999999875
Q ss_pred C---------hhcccceEEEEccCCccCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 740 N---------QETFTRISGYCEQNDIHSPYVTVYESLLYS-AWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 740 ~---------~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
. ....++.++|++|++.+++.+|+.||+.+. .... .....+..+.++++++.+|+.+..++..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 123456799999999999999999999753 2221 1223334456888999999987666653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+..|+
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 479999999999999999999999999999999999999999999998777999999999987 44556676
No 141
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.1e-34 Score=306.04 Aligned_cols=191 Identities=29% Similarity=0.352 Sum_probs=159.4
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 4677776652 34699999999999999999999999999999999998765 37999999987532
Q ss_pred --hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 742 --ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 742 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
...++.++|++|++.+++.+|++||+.+.... . .+++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23566899999999888899999999874211 1 2345788999999987766653 479999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||+|+.+|++++|||||+|||+.+++.+.+.|+++.++|+|+|+++|++.. +...+|+
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~ 194 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGAR 194 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccce
Confidence 9999999999999999999999999999999999999987779999999999863 3334443
No 142
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-34 Score=321.32 Aligned_cols=202 Identities=26% Similarity=0.337 Sum_probs=165.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 6789999988410 01123599999999999999999999999999999999998765 3799999998863
Q ss_pred h-------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 741 Q-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 741 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
. ...++.+|||+|++ .+++ .||.|++.|..... .....+.++++.++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23567899999986 4454 69999999875332 234445566789999999996 344543 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dr 213 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADY 213 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998777999999999985 56667787
No 143
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=9.3e-34 Score=323.66 Aligned_cols=214 Identities=20% Similarity=0.212 Sum_probs=170.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+.............+...+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 589999998885311000000011235799999999999999999999999999999999998765 479999999886
Q ss_pred Ch------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 740 NQ------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
.. ..+++.++||+|++ .++|.+||.|++.+......+ ..++++..++++++++.+++. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 42 12456899999997 588899999999886543211 234555567788999999994 344444 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|+|++|||+. .+.+..|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dr 231 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDR 231 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 999999999986 45556676
No 144
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-34 Score=324.39 Aligned_cols=203 Identities=23% Similarity=0.324 Sum_probs=165.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. ....+.+|+|||+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 58999999988421 01124599999999999999999999999999999999998775 379999999775
Q ss_pred Ch-------------------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 000907 740 NQ-------------------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798 (1230)
Q Consensus 740 ~~-------------------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 798 (1230)
.. ...++.+|||+|++ .+++ .||+||+.|+.... .....+..++++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23467899999986 4555 59999998864321 223444456788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000907 799 -PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 877 (1230)
Q Consensus 799 -~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~ 877 (1230)
+..++. +..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 3579999999999999999999999999999999999999999999998777999999999986 455
Q ss_pred HHHhc
Q 000907 878 EAFDA 882 (1230)
Q Consensus 878 ~~fd~ 882 (1230)
+..|+
T Consensus 241 ~~adr 245 (320)
T PRK13631 241 EVADE 245 (320)
T ss_pred HhCCE
Confidence 66777
No 145
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.4e-34 Score=306.45 Aligned_cols=196 Identities=22% Similarity=0.282 Sum_probs=164.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+. ++.+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 488899987652 24699999999999999999999999999999999998765 379999999876
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
.....++.++|++|++.+++.+|+.||+.+....+. .. .++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345578999999989998999999988654321 11 2344678899999987766654 469999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~ 206 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTR 206 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcce
Confidence 999999999999999999999999999999999999998878999999999986 44454454
No 146
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-34 Score=321.23 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=165.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKG--------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCC--------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 47889999887411 01124699999999999999999999999999999999998765 379999999876
Q ss_pred Ch-------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000907 740 NQ-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPG 809 (1230)
Q Consensus 740 ~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 809 (1230)
.. ...++.+|||+|++ .+++ .||.||+.|..... .....+..++++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 23567899999986 3554 59999998864322 234444556788999999996 555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+..|+
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dr 215 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADE 215 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999875 4899999999987 45667787
No 147
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.1e-33 Score=309.79 Aligned_cols=202 Identities=25% Similarity=0.389 Sum_probs=165.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 48899999876310 0113599999999999999999999999999999999998765 379999999875
Q ss_pred Chh---c---c-cceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 740 NQE---T---F-TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~---~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
... . . ++.++|++|++.+++.+|+.||+.+....+ ........++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 421 1 1 357999999999999999999998765332 1223344567889999999987666553 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++.. + +..|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 215 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDR 215 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999998754 8999999999873 3 33555
No 148
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=314.12 Aligned_cols=202 Identities=24% Similarity=0.281 Sum_probs=164.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 367888887662 246999999999999999999999999999999999986531 2589999999
Q ss_pred eecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCCC
Q 000907 737 YPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL----RQALVGLPG 809 (1230)
Q Consensus 737 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~~~ 809 (1230)
.++.. ..+++.++|++|++.+++.+||.||+.+....+.. .....+..+.++++++.+++.+. .++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87632 34567899999999888999999999886433211 11223344567889999998542 2332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|+++|++. ++.+..|+
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDY 214 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCE
Confidence 457999999999999999999999999999999999999999999999854 899999999987 45566776
No 149
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=9.2e-34 Score=315.06 Aligned_cols=199 Identities=24% Similarity=0.305 Sum_probs=165.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35778887663 24699999999999999999999999999999999998765 4799999998753
Q ss_pred h----------------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000907 741 Q----------------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804 (1230)
Q Consensus 741 ~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 804 (1230)
. ...++.++|++|++.+++..|+.||+.+..... .........+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 1 134567999999999999999999998753211 1123344455678899999998766654
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++....|+
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 216 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADR 216 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 45566676
No 150
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-33 Score=315.01 Aligned_cols=200 Identities=23% Similarity=0.281 Sum_probs=162.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999998763 245999999999999999999999999999999999986642 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 807 (1230)
.++.. ...++.++|++|++.+++ +||+||+.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234677999999988775 899999988653321 112333445678888888873 233433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|++. ++.+..|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~ 218 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDR 218 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999985 4799999999987 45566676
No 151
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.5e-34 Score=305.52 Aligned_cols=186 Identities=30% Similarity=0.411 Sum_probs=157.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCc
Confidence 67888887652 34699999999999999999999999999999999998764 4799999998753
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
....++.++|++|++.+++.+|+.||+.+....+. .. ++.++++++.+|+.+..+... +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256678999999888889999999987543321 11 234788999999987655543 4799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
++||++|+.+|++++|||||+|||+.+...+.+.|++++++|+|||++||++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 99999999999999999999999999999999999998778999999999986
No 152
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-34 Score=313.75 Aligned_cols=197 Identities=22% Similarity=0.341 Sum_probs=161.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 478899988763 24699999999999999999999999999999999998765 479999999875
Q ss_pred Chh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCC
Q 000907 740 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lS 814 (1230)
... ..++.++|++|+..+++.+||.||+.+..... ......+.++++++.+ ++.+..+.. .+.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 24567999999999999999999998754211 1122234466777777 465544443 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADR 206 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCE
Confidence 99999999999999999999999999999999999999999998877999999999986 56667776
No 153
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-34 Score=319.30 Aligned_cols=200 Identities=25% Similarity=0.371 Sum_probs=166.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 588999998873 124699999999999999999999999999999999998765 479999999876
Q ss_pred C-----hhcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 740 N-----QETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 740 ~-----~~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
. ...+++.+||++|++. .+...||+||+.+..... ..+..+..++++++++.++|.+..++. .+.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 1235678999999873 334579999998864322 223444456789999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+..|+
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dr 211 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDN 211 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999998765 899999999987 35556777
No 154
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-34 Score=302.95 Aligned_cols=183 Identities=30% Similarity=0.545 Sum_probs=153.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 738 (1230)
.++|+|+++.++.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999998632 23467999999999999999999999999999999999987632 358999999987
Q ss_pred cCh--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 739 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 739 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 245678999999999999999999998753210 1222 3469999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++++|||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+..|+
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 999999999999999999999999999999999999999998765 678888887776677777776
No 155
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-34 Score=307.17 Aligned_cols=195 Identities=26% Similarity=0.333 Sum_probs=159.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
.++|+++.+. ++. .|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCc
Confidence 5677777652 122 399999999999999999999999999999998765 47999999987643
Q ss_pred -hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
...++.++|++|++.+++.+|++||+.+....+. .. .+..++.++++++.+++.+..++.+ ..||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1234679999999999999999999987532111 11 1233456789999999987766653 4799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+..|+
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 198 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQR 198 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCE
Confidence 9999999999999999999999999999999999999875 4899999999986 45556676
No 156
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.2e-33 Score=312.98 Aligned_cols=204 Identities=23% Similarity=0.268 Sum_probs=160.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+..+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35678877662 35699999999999999999999999999999999998411124799999998754
Q ss_pred h---hc-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000907 741 Q---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS----EVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 811 (1230)
. .. .+..++|++|++.+++.+|++|++.+........ .....+..++++++++.+++. +..++.++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 2 12 2334899999999999999999998764322110 012223345678899999997 34454322 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-Hhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-fd~ 882 (1230)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... .|+
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~ 214 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDY 214 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCe
Confidence 49999999999999999999999999999999999999999999999777899999999986 34344 465
No 157
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-33 Score=302.48 Aligned_cols=185 Identities=24% Similarity=0.342 Sum_probs=157.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccc
Confidence 56788887652 34699999999999999999999999999999999998765 4799999998754
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ..+++.++|++|+..+++.+||+||+.+.... . . . +..++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~---~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S---P-G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C---c-c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 34567899999998888899999999876321 1 1 1 235788999999977666543 46999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||++|||+++.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++.
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 9999999999999999999999999999999999999998777999999999976
No 158
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=319.44 Aligned_cols=204 Identities=25% Similarity=0.300 Sum_probs=165.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ....+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~--------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPG--------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCC--------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 36788888876310 00124699999999999999999999999999999999998775 479999999875
Q ss_pred Ch-------hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 740 NQ-------ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 740 ~~-------~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
.. ...++.++|++|++. .+..+||.||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 234567999999862 233579999998764332 223444556788999999996 5666553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. ++.+..|+
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~ 214 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADD 214 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 479999999999999999999999999999999999999999999998777999999999986 55666777
No 159
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=9.1e-34 Score=326.22 Aligned_cols=190 Identities=21% Similarity=0.284 Sum_probs=162.6
Q ss_pred cCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee----cC---hh---c-ccceEEE
Q 000907 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP----KN---QE---T-FTRISGY 750 (1230)
Q Consensus 682 ~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~----~~---~~---~-~~~~~~~ 750 (1230)
.++...+|+|+||++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+ +. .. . .++.++|
T Consensus 33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 45677899999999999999999999999999999999998775 47999999962 21 11 1 1257999
Q ss_pred EccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000907 751 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVAN 830 (1230)
Q Consensus 751 v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~ 830 (1230)
++|+..++|.+||+||+.++...+ .....+..++++++++.+||.+..+... .+||||||||++|||||+.+
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~ 182 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMD 182 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999875443 2344555677899999999988777664 46999999999999999999
Q ss_pred CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 831 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 831 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+||||||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+..|+
T Consensus 183 P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~Dr 234 (382)
T TIGR03415 183 ADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNR 234 (382)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999998764 999999999987 56677787
No 160
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-34 Score=291.13 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=172.3
Q ss_pred ccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCC
Q 000907 681 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPY 760 (1230)
Q Consensus 681 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ 760 (1230)
++++++.+++|+||+++||++++++|||||||||++++|.|...+ .+|+|.++|.+.+. ..+.++||.|.+.-++|.
T Consensus 10 K~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k 86 (300)
T COG4152 10 KSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPK 86 (300)
T ss_pred hccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhh-hhhhhcccChhhhccCcc
Confidence 345778999999999999999999999999999999999998875 47999999998764 345679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCC
Q 000907 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 840 (1230)
+||.|.|.|.+.++ .++.++..+.++..++.+++......++ +.||.|++|++.+-.+++++|++++||||+
T Consensus 87 ~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 87 MTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred CcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 99999999999887 4566777788999999999998877764 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 841 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||.+.+.+-+.+.+++++|.|||+++|+-. .+-++.|+
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~ 199 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDR 199 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhh
Confidence 999999999999999999999999999999876 66788888
No 161
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-34 Score=317.43 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=164.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. +++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 56788887662 124599999999999999999999999999999999998765 4799999998764
Q ss_pred h----hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 741 Q----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++|++|++. .++..|+.||+.+..... ........+.++++++.+++.+..++.. +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998765322 2234444566889999999988777653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.. + ...|+
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~ 204 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADR 204 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCE
Confidence 99999999999999999999999999999999999999999987779999999999873 4 45676
No 162
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.3e-33 Score=310.03 Aligned_cols=189 Identities=28% Similarity=0.368 Sum_probs=158.0
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh--hcccceEEEEc-cCCccCC
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCE-QNDIHSP 759 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~ 759 (1230)
++.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4567899999999999999999999999999999999998765 47999999986432 23456799997 5567788
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCC
Q 000907 760 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839 (1230)
Q Consensus 760 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEP 839 (1230)
.+|++|++.+....+ .....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 899999998865432 1233334456788999999988777664 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 840 TSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 840 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 223 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARR 223 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCE
Confidence 9999999999999999998754 899999999986 45566676
No 163
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-33 Score=315.01 Aligned_cols=200 Identities=27% Similarity=0.361 Sum_probs=165.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhH
Confidence 67888887652 35699999999999999999999999999999999998664 4799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWL--RLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++|++|+..+++.+|+.||+.++... ..... ......+.++++++.+++.+..++. ++.|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 141 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGR-LSAEDNARVNQAMEQTRINHLADRR-----LTDLSG 141 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccC-CCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCH
Confidence 2 23456799999999888889999999875211 00011 1123345678899999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~ 207 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDH 207 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999998777999999999987 56677787
No 164
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=313.93 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=164.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcc
Confidence 67888887663 34699999999999999999999999999999999998764 4799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
. ..+++.++|++|++.+++.+||+||+.+..... ....+..++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 234567999999998888899999998754221 1122233456788999999987666654 4799999
Q ss_pred HHHHHHHHHHh------hCCCEeEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+..|+
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 210 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADR 210 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCE
Confidence 99999999999 5999999999999999999999999999987 56899999999986 45566776
No 165
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=317.69 Aligned_cols=200 Identities=27% Similarity=0.289 Sum_probs=166.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3789999987731 124599999999999999999999999999999999998775 479999999886
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 667789999998865432 1233444567899999999988777664 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++.. +. ..|+
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~ 209 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCE
Confidence 9999999999999999999999999999999999999999999865 8999999999873 33 4676
No 166
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=313.26 Aligned_cols=199 Identities=25% Similarity=0.324 Sum_probs=161.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588899988662 346999999999999999999999999999999999986531 2579999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++.. ..+++.++|++|++.+++ +|++||+.+....+ .......++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 234567999999988887 89999998865432 1233334456788999998842 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+..|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~ 222 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDY 222 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999864 899999999986 44455666
No 167
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.8e-33 Score=306.90 Aligned_cols=192 Identities=23% Similarity=0.348 Sum_probs=161.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccc
Confidence 4677776552 35699999999999999999999999999999999998764 47999999987643
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
.. .+.++|++|++.+++.+|++||+.+....+. .. ++.+.++++.+++.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 3578999999999999999999987654321 11 234688899999987766653 46999999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~ 193 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADH 193 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999998777999999999987 45566676
No 168
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=313.29 Aligned_cols=202 Identities=23% Similarity=0.255 Sum_probs=164.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478889988763 246999999999999999999999999999999999987642 2479999999
Q ss_pred eecC-----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....+...+.++++++.+++.+ ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 123456799999999999999999999886543211 1123334456788899998753 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 217 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDY 217 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCE
Confidence 457999999999999999999999999999999999999999999999865 699999999987 45566776
No 169
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-33 Score=314.07 Aligned_cols=202 Identities=22% Similarity=0.237 Sum_probs=164.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 478889988762 35699999999999999999999999999999999998765 479999999876
Q ss_pred Chh---c-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCC----------C--CCCHHHHHHHHHHHHHHcCCCccccc
Q 000907 740 NQE---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS----------S--EVNSKTREMFVEEVMELVELNPLRQA 803 (1230)
Q Consensus 740 ~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~----------~--~~~~~~~~~~~~~~l~~l~l~~~~~~ 803 (1230)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+|+.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 421 1 234589999999999999999999886431110 0 00111233567888999999876666
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 804 ~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+ +.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 53 479999999999999999999999999999999999999999999998765 899999999987 55566676
No 170
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.7e-33 Score=311.30 Aligned_cols=200 Identities=25% Similarity=0.308 Sum_probs=163.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 56788887652 34699999999999999999999999999999999998765 3799999998754
Q ss_pred hh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 741 QE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS--S---EVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..+++++++++.+++.+..++.+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1245699999999999999999999886432100 0 0112334456889999999987766653 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 211 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADK 211 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 46666776
No 171
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-33 Score=315.69 Aligned_cols=199 Identities=24% Similarity=0.346 Sum_probs=165.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ +++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 67888888763 123599999999999999999999999999999999998765 4799999998754
Q ss_pred h---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. ...++.++|++|++. .+...||.||+.+..... ........++++++++.+++.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 244567899999963 334679999998764322 2334444566889999999987777653 479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~dr 207 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADY 207 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998765 899999999987 56667777
No 172
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-33 Score=307.12 Aligned_cols=197 Identities=26% Similarity=0.386 Sum_probs=165.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
.++|+++.+. .+.+++|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5677777652 34699999999999999999999999999999999998775 37999999987643
Q ss_pred h-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 1 235679999999999989999999988654331 223334556788999999987777653 5799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~ 200 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDR 200 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999998764 899999999986 46677777
No 173
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=311.41 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=162.5
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeEEEEEEEC
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITIS 735 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~ 735 (1230)
..++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|... + .+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3589999998773 2469999999999999999999999999999999999742 1 1247999999
Q ss_pred CeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 736 GYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 736 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
|.++.. ...++.++|++|++.+++ .||+||+.+....+. ....+...++++++++.+++.+....... ..+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-ESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 234568999999988887 599999988654321 11223334567888999998542211111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||++. ++.+..|+
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~ 217 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDV 217 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCE
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 45566676
No 174
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=312.07 Aligned_cols=201 Identities=21% Similarity=0.275 Sum_probs=163.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377889988763 246999999999999999999999999999999999986532 2489999999
Q ss_pred eecC-----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++. ....++.++|++|++.+++.+||+||+.+....+. .......++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 8753 12345679999999999999999999988654321 1123344556788899998842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++ +++|||+++|++. ++.+..|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~ 216 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQ 216 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999985 4689999999986 45566676
No 175
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=315.44 Aligned_cols=200 Identities=24% Similarity=0.309 Sum_probs=165.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 5889999887631 234699999999999999999999999999999999998765 479999999886
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ..+++.++|++|++. .++.+||+||+.+..... .....+..+.++++++.+++.+..++.. +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 42 235678999999974 567789999998864322 1233344556889999999987777653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|++.. + ...|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~ 211 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADK 211 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCE
Confidence 9999999999999999999999999999999999999999998766 5999999999874 3 34565
No 176
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=315.87 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=162.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 56788887662 24699999999999999999999999999999999998765 4799999998763
Q ss_pred h-----hcccceEEEEccCCcc-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q-----ETFTRISGYCEQNDIH-SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~-----~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...++.++|++|++.. +...|+.||+.+..... .....+..+.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1345679999998753 34568999998764332 123333445678899999998776665 34799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~ 205 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDA 205 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777999999999986 45566776
No 177
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=314.68 Aligned_cols=202 Identities=28% Similarity=0.379 Sum_probs=165.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 488999988763 24699999999999999999999999999999999998764 479999999875
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...+++.++|++|+..+++.+|+.||+.+....... .........++++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 3 233456799999998888899999999875321100 00111223456788999999987666654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~ 217 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDY 217 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998765 899999999987 55566776
No 178
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-34 Score=324.29 Aligned_cols=197 Identities=27% Similarity=0.400 Sum_probs=162.9
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECC
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 736 (1230)
.+..++|+|+++++. +++++|+++||+|++||.+||+|+|||||||++|+|.+... .+|+|.+||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 344699999999884 23469999999999999999999999999999999999765 379999999
Q ss_pred eecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccc
Q 000907 737 YPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVG 806 (1230)
Q Consensus 737 ~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~ 806 (1230)
.+++ .+..|+.+||||||..+|. -||.+|+.|+. ...+ +++|-++.+..++.+ -.+|.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSAS----DEEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcC----HHHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 9864 3567899999999988875 59999999862 1222 233555556655543 3456677
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 807 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+ ..|||||||||+||||+++||+|+++|||||.||+++..++++.+++. ..|+|+|++.|+.+ ....||+
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~Dk 554 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDK 554 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCE
Confidence 654 359999999999999999999999999999999999999999999884 46999999999875 5577887
No 179
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2e-33 Score=304.05 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=160.5
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. .+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEccc
Confidence 5677777652 146799999999999999999999999999999998765 37999999987642
Q ss_pred -hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
...++.++|++|++.+++.+|+.||+.+...... . .....+++++++++.+++.+..++. ++.||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHH
Confidence 2345679999999999999999999987532211 1 1122345678899999998776665 34799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~ 198 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQ 198 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCe
Confidence 99999999999999999999999999999999999998754 899999999986 44556676
No 180
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-33 Score=316.15 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=162.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~--------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAG--------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCC--------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 36788998877310 00113599999999999999999999999999999999998765 479999999875
Q ss_pred Ch-------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 000907 740 NQ-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPG 809 (1230)
Q Consensus 740 ~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~ 809 (1230)
.. ...++.++|++|++ .+++ .||+||+.+..... ....++..+.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN----- 142 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 23456799999986 3444 69999998764322 1233344456788999999963 44544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++||+||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~ 214 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADF 214 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCE
Confidence 3579999999999999999999999999999999999999999999998777999999999986 45566676
No 181
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3e-33 Score=304.26 Aligned_cols=202 Identities=22% Similarity=0.336 Sum_probs=166.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. ..+.+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~---------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGH---------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccC---------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhH
Confidence 578888887631 01236799999999999999999999999999999999998764 4799999998763
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.+..++.. +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 2 1345789999999999999999999998654321 1233444567889999999987666653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|+|+++|++. +.+..|+
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~ 210 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADR 210 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 3456665
No 182
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-33 Score=311.96 Aligned_cols=203 Identities=20% Similarity=0.270 Sum_probs=163.8
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeEEEEEE
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNIT 733 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~ 733 (1230)
++..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 344688999998763 2369999999999999999999999999999999999864 1 12479999
Q ss_pred ECCeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccc
Q 000907 734 ISGYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQAL 804 (1230)
Q Consensus 734 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 804 (1230)
++|.+... ...++.++|++|++.+++ .|++||+.+....+. .......+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987631 234678999999988887 899999987643221 1233344456888999999843 22332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++ +++|||++||++. ++.+..|+
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999985 4789999999986 45566676
No 183
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2e-33 Score=314.00 Aligned_cols=204 Identities=25% Similarity=0.322 Sum_probs=165.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe-EEEEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 738 (1230)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478888887762 3569999999999999999999999999999999999876531 36999999987
Q ss_pred cCh--------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccc
Q 000907 739 KNQ--------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-----EVNSKTREMFVEEVMELVELNPLRQALV 805 (1230)
Q Consensus 739 ~~~--------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 805 (1230)
... ...++.++|++|++.+++.+||.||+.+......+. ........++++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123567899999999999999999998753210000 0112233456889999999987666653
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 806 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.+..|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~ 222 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCER 222 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 46999999999999999999999999999999999999999999999875 4899999999986 34555666
No 184
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-33 Score=297.46 Aligned_cols=176 Identities=57% Similarity=0.920 Sum_probs=149.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47889999887421 012569999999999999999999999999999999999753223579999999886
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 5 34567899999999999999999999874210 0 49999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+..|+
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~ 178 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCE
Confidence 999999999999999999999999999999999999998777999999999998556677776
No 185
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.4e-33 Score=312.28 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=164.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+......+ ..+++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 67889988774210000 01235799999999999999999999999999999999998765 4799999998754
Q ss_pred hh------cccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000907 741 QE------TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 811 (1230)
.. ..++.++|++|++ .+.+.+||+||+.+..... .........++++++++.+++. +..+.. ++
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 2356799999996 4667899999997754321 1122333455688999999995 555554 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+..|+
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 220 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQR 220 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcE
Confidence 79999999999999999999999999999999999999999999998765 899999999986 45556676
No 186
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=309.72 Aligned_cols=204 Identities=22% Similarity=0.302 Sum_probs=161.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC---CCCeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK---TRGYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477888887762 346999999999999999999999999999999999952 2212479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++ .|+.||+.+....+. .......++.++++++.+++.+..+.... ..++
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988887 699999987654331 11222334567889999998642211111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+..|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~ 214 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDK 214 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCE
Confidence 799999999999999999999999999999999999999999999985 5899999999987 45677787
No 187
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-34 Score=277.99 Aligned_cols=187 Identities=24% Similarity=0.314 Sum_probs=158.2
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC-------------h---
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN-------------Q--- 741 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------------~--- 741 (1230)
++.++++...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+| ..|.|.+||..+. .
T Consensus 11 dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q~ 88 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQL 88 (256)
T ss_pred HHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence 334456788999999999999999999999999999999999977665 4799999997531 1
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
...|...|+|+|..++++.+||.||+.-+.. +. -..++.+..++++..++..|+.+.+|.+ +..|||||+||+
T Consensus 89 ~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~ 161 (256)
T COG4598 89 QRLRTRLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRV 161 (256)
T ss_pred HHHHHHhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHH
Confidence 1234467999999999999999999875421 11 1345666677889999999999888765 347999999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
+|||||+.+|+++++|||||+|||+-.-++++.+++++++|+|.+++||.-.
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 9999999999999999999999999999999999999999999999999643
No 188
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=314.45 Aligned_cols=202 Identities=23% Similarity=0.289 Sum_probs=166.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 688899998763 34699999999999999999999999999999999998765 379999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.++|++|++.+++.+|++||+.+......+ .....+...+.++++++.+++.+..++. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 23456799999999998899999999864211100 0001123345678899999998766665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+..|+
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~ 213 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASH 213 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 899999999987 56777787
No 189
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-33 Score=313.91 Aligned_cols=199 Identities=28% Similarity=0.346 Sum_probs=164.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 56788888763 124599999999999999999999999999999999998765 3799999998763
Q ss_pred h-----hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q-----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...++.++|++|++. .+...||.||+.+..... .....+..+++.++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999963 334579999998764321 2234444566889999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~ 206 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADK 206 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777999999999976 45566776
No 190
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2e-33 Score=308.22 Aligned_cols=195 Identities=26% Similarity=0.301 Sum_probs=158.2
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 35677777652 34699999999999999999999999999999999998765 4799999998754
Q ss_pred hh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000907 741 QE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-LNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+..+++++.++ +.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 21 134579999999999999999999988654321 11 1233566777776 45544544 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+..|+
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 201 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADR 201 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 899999999986 45556676
No 191
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-34 Score=326.63 Aligned_cols=191 Identities=24% Similarity=0.442 Sum_probs=161.1
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECC
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 736 (1230)
+++.++.+|+++.++ +++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 466777889999875 233799999999999999999999999999999999999875 479999999
Q ss_pred eec---ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc------cccccC
Q 000907 737 YPK---NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR------QALVGL 807 (1230)
Q Consensus 737 ~~~---~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~------~~~~~~ 807 (1230)
.+. +...+++.++||+|++.+++ -|++||+.++. .+.+ ++.+.++++..++.+.. |+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 44678999999999998886 59999998752 1122 34466777777765443 555665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
. .++|||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|++++||++.
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~ 516 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE 516 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH
Confidence 4 468999999999999999999999999999999999999999999999875 599999999986
No 192
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.8e-33 Score=296.40 Aligned_cols=177 Identities=49% Similarity=0.844 Sum_probs=152.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCeEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK--TRGYITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 737 (1230)
.++++|+++.++... +..++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCE
Confidence 578999998874210 001246999999999999999999999999999999999987 54 4799999999
Q ss_pred ecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 738 PKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 738 ~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
+......++.++|++|++.+++.+|++||+.+..... .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8764455678999999999999999999997642100 399999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|+++.++|+|+|+++|++..++.+..|+
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCE
Confidence 99999999999999999999999999999999999999998777999999999998777777887
No 193
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-33 Score=310.57 Aligned_cols=207 Identities=24% Similarity=0.290 Sum_probs=165.8
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEE
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNIT 733 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~ 733 (1230)
.+..++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. +.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344689999998763 246999999999999999999999999999999999986531 3579999
Q ss_pred ECCeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 734 ISGYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 734 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
++|.+... ...++.++|++|++.+++ .||+||+.+..... ........+++++++++.+++.+..+.... .
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-K 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-C
Confidence 99987632 234667999999988887 69999998864321 112333445667888999998542222222 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+..|+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~ 231 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDY 231 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCE
Confidence 246799999999999999999999999999999999999999999999985 4799999999987 56677787
No 194
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.9e-33 Score=311.56 Aligned_cols=201 Identities=28% Similarity=0.391 Sum_probs=164.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 56778887652 35699999999999999999999999999999999998765 3799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAW-LRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. ...++.++|++|++.+++.+||.||+.+... .+........+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 2 2334578999999877888999999987521 100000111223456788999999987666653 479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+..|+
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDH 206 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998777899999999987 56677777
No 195
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-33 Score=310.75 Aligned_cols=205 Identities=23% Similarity=0.268 Sum_probs=162.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..++. +.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 688999998763 246999999999999999999999999999999999976531 2579999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ..+++.++|++|++.+++. ||.||+.+....+.. ........++++++++.+++.+....... ..++
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87632 2345679999999888874 999999886543311 11223334567889999998642111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~ 231 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQR 231 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 789999999986 44455676
No 196
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5e-33 Score=305.76 Aligned_cols=197 Identities=28% Similarity=0.396 Sum_probs=164.6
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5677777653 34699999999999999999999999999999999998764 47999999987643
Q ss_pred h-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
. ..++.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.. +.||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 23567999999999999999999998765432 1223334456788999999987666653 4699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~ 200 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADR 200 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCE
Confidence 99999999999999999999999999999999999998765 899999999986 45566676
No 197
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.1e-34 Score=347.83 Aligned_cols=201 Identities=28% Similarity=0.430 Sum_probs=164.2
Q ss_pred CCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEE
Q 000907 655 PFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 734 (1230)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 734 (1230)
|.-...++++|++|+|.. ++..+|+|+|++|+|||.+||+|+||||||||+|+|+|++.| .+|+|.+
T Consensus 466 ~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEE
Confidence 344558999999999853 234699999999999999999999999999999999999876 4799999
Q ss_pred CCeecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccc
Q 000907 735 SGYPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-------LNPLRQAL 804 (1230)
Q Consensus 735 ~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~ 804 (1230)
||.+.+ ...+|+.+|||+||+.++. -|++||+.++. +..+.+ .+.+.++..| +..-.|+.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDE----EIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhcccccccc
Confidence 999864 4578999999999998875 69999998752 122211 1222333322 33445677
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|+.+ .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|.++. +|+|+|+++|+++ .....|+
T Consensus 603 v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adr 676 (709)
T COG2274 603 VGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADR 676 (709)
T ss_pred cccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccE
Confidence 77654 4799999999999999999999999999999999999999999999875 6899999999987 5567777
No 198
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-33 Score=316.72 Aligned_cols=209 Identities=19% Similarity=0.227 Sum_probs=166.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-C-eEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR-G-YITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~-~~~G~i~~~g~ 737 (1230)
.++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + ..+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37889999887421 1225699999999999999999999999999999999998653 2 24799999998
Q ss_pred ecCh---hc----ccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 738 PKNQ---ET----FTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 738 ~~~~---~~----~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
++.. .. +++.++||+|++ .+.|.+|+.+++........ ....++..+++.++++.+||.+..+.. +.
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l--~~ 149 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRL--DV 149 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHH--hC
Confidence 8632 11 224699999998 47899999998876543321 224455567789999999997532211 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+++||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++++ .|.|+|++||+.+ .+.+..|+
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adr 223 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHK 223 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 2457999999999999999999999999999999999999999999999976 4999999999987 45566777
No 199
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-33 Score=281.84 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=165.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
|+.+|++|++. ++.+|++||++++|||++||+||||||||||||.|+|...++ +|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChh
Confidence 56788888763 467999999999999999999999999999999999987653 799999999865
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
. ....+..+.+||+..+-...||+|-+.++..-... .....+..+.++++++..++.+.+.+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 3 34556778999998887778999999987432211 1122244556788999999998887653 4799999
Q ss_pred HHHHHHHHHHhh------CCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||.+||.|+. ++++||||||||+||...++.++++.|+++++|..|+++.||.+.. -...|+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLA-A~YaDr 210 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLA-AQYADR 210 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHH-HHhhhe
Confidence 999999999985 4569999999999999999999999999999999999999999843 244566
No 200
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.8e-33 Score=306.13 Aligned_cols=183 Identities=25% Similarity=0.352 Sum_probs=153.1
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHH
Q 000907 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLL 768 (1230)
Q Consensus 689 L~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~ 768 (1230)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998765 4799999998764321 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHH
Q 000907 769 YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848 (1230)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~ 848 (1230)
+......+ .....+..+.++++++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 76321111 2233344556788999999987666653 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 849 AVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 849 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 184 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDR 184 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999998764 899999999987 56667787
No 201
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-33 Score=315.95 Aligned_cols=210 Identities=23% Similarity=0.254 Sum_probs=169.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+...... . ...+.+.+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~--~-~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGL--F-KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCc--c-ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 48899999887531100 0 001235799999999999999999999999999999999998765 479999999886
Q ss_pred Ch------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000907 740 NQ------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGV 810 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 810 (1230)
.. ..+++.++||+|++ .+.|.+|+.+++....... ......+..+++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 13456799999997 5889999999997754332 12344555677899999999963 44544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||||||||++|||||+.+|++|++||||+|||..++..++++|+++.++ |.|+|++||+.+ .+....|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adr 224 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADE 224 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 999999999986 44556676
No 202
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-33 Score=311.14 Aligned_cols=199 Identities=23% Similarity=0.295 Sum_probs=161.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEEC
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITIS 735 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~ 735 (1230)
..++++|+++.+. ++.+|+|+||+|++||+++|+|||||||||||++|+|..++. +.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999998763 246999999999999999999999999999999999985421 247999999
Q ss_pred CeecC-----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000907 736 GYPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVG 806 (1230)
Q Consensus 736 g~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 806 (1230)
|.++. ...+++.++|++|++.+++ .||+||+.+....+. ... ..++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 2234567999999998887 499999988654321 111 23345677888887742 22322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 807 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++. ++.+..|+
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~ 222 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQ-QAVRVSDM 222 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCE
Confidence 45799999999999999999999999999999999999999999999985 4799999999986 56677777
No 203
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=8.6e-33 Score=316.01 Aligned_cols=209 Identities=21% Similarity=0.294 Sum_probs=168.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 738 (1230)
-++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58899999887421 12357999999999999999999999999999999999987642 137999999998
Q ss_pred cCh---hc---c-cceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 739 KNQ---ET---F-TRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 739 ~~~---~~---~-~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
+.. .. + ++.++||+|++ .+.|.+|+.+++........ .....+..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 632 11 2 24799999998 68899999999977644322 234445556788899999997543221 1 23
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||+. .+.+..|+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dr 231 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDK 231 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCE
Confidence 5689999999999999999999999999999999999999999999999765 899999999987 45566787
No 204
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-33 Score=307.62 Aligned_cols=204 Identities=22% Similarity=0.279 Sum_probs=160.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeEEEEEEECCeec
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR-GYITGNITISGYPK 739 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 739 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56778887763 34699999999999999999999999999999999997542 23579999999876
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
.. ...++.++|++|++.+++ .|++||+.+....+... ......+++++++++.+++.+...... +...+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 42 234667999999998887 69999998865432110 112333456788999999953211111 1124579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+..|+
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 210 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADY 210 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcE
Confidence 99999999999999999999999999999999999999999864 899999999986 44455665
No 205
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-33 Score=307.16 Aligned_cols=194 Identities=26% Similarity=0.372 Sum_probs=160.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 477888888762 24699999999999999999999999999999999998765 479999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.++|++|++.+++ .|++||+.+....+ . . ..++++++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988876 69999998653221 1 1 124578889999996 444543 457999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~ 201 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDY 201 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 999999999987 45566676
No 206
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-33 Score=304.40 Aligned_cols=184 Identities=30% Similarity=0.408 Sum_probs=156.8
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-hcccceEEEEccCCccCCCCCHHHH
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYES 766 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~ 766 (1230)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 89999999999999999999999999999999998765 47999999987643 1235679999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHH
Q 000907 767 LLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846 (1230)
Q Consensus 767 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~ 846 (1230)
+.+..... .....+..+.+.++++.+++.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1233444556788999999987777654 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 847 AAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 847 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++.+.+.|++++++ |+|+|++||++. ++.+..|+
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~ 199 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADK 199 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999998754 999999999986 45566776
No 207
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-33 Score=307.61 Aligned_cols=205 Identities=22% Similarity=0.305 Sum_probs=163.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478889988763 2469999999999999999999999999999999999864 21 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ...++.++|++|+..+++.+|+.||+.+...... .....+.+++++++++.+++.+....... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 2346789999999999999999999987643221 11223334567888999998542111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 216 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDY 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 55566776
No 208
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1e-33 Score=349.07 Aligned_cols=188 Identities=28% Similarity=0.412 Sum_probs=157.9
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+. ++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 46999999999841 23499999999999999999999999999999999998876 37999999987
Q ss_pred cC--hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 739 KN--QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 739 ~~--~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
+. ...+++.++||+|++.+++ .|++||+.++. ++.+ ++.++++++..++.+ -.|+.+|+.+
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 54 3566789999999999886 49999998751 1122 234666777766643 3477787654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 872 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 872 (1230)
..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++ .+++|+|+++|++
T Consensus 469 -~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 469 -ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 469999999999999999999999999999999999999999999876 4689999999985
No 209
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-33 Score=311.12 Aligned_cols=203 Identities=26% Similarity=0.350 Sum_probs=162.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC------eEEEEEEE
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG------YITGNITI 734 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~------~~~G~i~~ 734 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56788887652 356999999999999999999999999999999999987642 12799999
Q ss_pred CCeecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 735 SGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 735 ~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
+|.+... ..+++.++|++|++..++.+|++||+.+....... ......+..+.++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987532 23456689999998766679999999875321110 0111123345678899999998766654 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHH
Q 000907 811 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 880 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~f 880 (1230)
..||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998765 899999999986 555667
Q ss_pred hc
Q 000907 881 DA 882 (1230)
Q Consensus 881 d~ 882 (1230)
|+
T Consensus 223 d~ 224 (272)
T PRK13547 223 DR 224 (272)
T ss_pred CE
Confidence 76
No 210
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-33 Score=313.65 Aligned_cols=202 Identities=25% Similarity=0.275 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe-EEEEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 738 (1230)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788999887631 12459999999999999999999999999999999999876531 13999999998
Q ss_pred cCh---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 739 KNQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
... ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.++|.+..++. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 667789999998764322 234444556788999999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ...|+
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~ 212 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQ 212 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 99999999999999999999999999999999999999999998764 8999999999874 3 45776
No 211
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-33 Score=314.78 Aligned_cols=204 Identities=20% Similarity=0.283 Sum_probs=162.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 58899999887410 00013599999999999999999999999999999999998765 479999999875
Q ss_pred C--------hhcccceEEEEccCCcc-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000907 740 N--------QETFTRISGYCEQNDIH-SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPG 809 (1230)
Q Consensus 740 ~--------~~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 809 (1230)
. ...+++.++|++|++.. +...|++||+.+..... ....+...++++++++.+++. +..++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 3 12345679999999732 22369999998864322 123334445678899999994 555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+..|+
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~ 220 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADE 220 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999875 4899999999987 56667777
No 212
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-33 Score=341.10 Aligned_cols=204 Identities=22% Similarity=0.296 Sum_probs=168.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378889988762 3469999999999999999999999999999999999876533479999999876
Q ss_pred Chh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
... ..++.+||++|++.+++.+||+||+.+....+.......+...++++++++.+++.+..++.+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 421 234679999999999999999999988643221111123334456889999999987777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~ 212 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDT 212 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999999877999999999986 45556676
No 213
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.2e-33 Score=323.83 Aligned_cols=179 Identities=25% Similarity=0.359 Sum_probs=154.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCccCCCCCH
Q 000907 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 691 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999998765 37999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
+||+.|+.... ...+.+++++++++.++|.+..++.. +.||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998864321 12233456889999999988777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+.++..+.+.|++++++ |+|+|++||++. ++....|+
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~ 201 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADR 201 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999998765 899999999987 56677787
No 214
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-33 Score=310.12 Aligned_cols=200 Identities=26% Similarity=0.291 Sum_probs=165.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4889999987631 123589999999999999999999999999999999998765 479999999876
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.++|++|++. +++..|+.+|+.+..... ....+...+.++++++.+++.+..+.. ++.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 42 245667999999974 677789999998864322 123344455678899999998776655 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++.. +.. .|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~ 211 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADH 211 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCE
Confidence 9999999999999999999999999999999999999999998764 8999999999873 333 665
No 215
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-33 Score=301.36 Aligned_cols=183 Identities=23% Similarity=0.344 Sum_probs=152.5
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCc
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDI 756 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~ 756 (1230)
+++.+ |+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 34445 99999999 99999999999999999999998765 37999999987531 124567999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 757 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+++.+|+.||+.+..... .....+++++++++.+++.+..+.. ++.||||||||++||++|+.+|++++|
T Consensus 86 ~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 86 LFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred cCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998764321 2233345678899999998766654 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADR 201 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999998765 899999999986 34455665
No 216
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6e-33 Score=302.61 Aligned_cols=195 Identities=23% Similarity=0.362 Sum_probs=159.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 478899988762 34699999999999999999999999999999999998664 479999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSg 815 (1230)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...++. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 234567899999988887 4999999875433211 11 134567899999995 344544 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++.. + +..|+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~ 206 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADK 206 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCE
Confidence 999999999999999999999999999999999999999999875 48999999999863 3 34555
No 217
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-33 Score=289.58 Aligned_cols=161 Identities=27% Similarity=0.416 Sum_probs=140.9
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 5677777652 23599999999999999999999999999999999998765 37999999987542
Q ss_pred --hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 742 --ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 742 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
..+++.++|++|++.+++.+|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 244567999999999888899999863 8999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+..|+
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~ 164 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDR 164 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999877899999999986 45555665
No 218
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-32 Score=301.37 Aligned_cols=205 Identities=22% Similarity=0.288 Sum_probs=160.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC--Ce-
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS--GY- 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~--g~- 737 (1230)
++++|+++.+..... ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 567888887742100 00124799999999999999999999999999999999998765 37999998 42
Q ss_pred -ecC---hhc----ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCC
Q 000907 738 -PKN---QET----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLP 808 (1230)
Q Consensus 738 -~~~---~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~ 808 (1230)
+.. ... .++.++|++|++.+++.+||.|++.+..... ........+.++++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 321 111 2356899999999999999999998754322 12333344567889999999753 3433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~ 218 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADR 218 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcce
Confidence 4579999999999999999999999999999999999999999999998777999999999954 33345565
No 219
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=316.11 Aligned_cols=211 Identities=17% Similarity=0.196 Sum_probs=164.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 737 (1230)
-++++|+++.+... .+.+.+|+|||++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37889999887421 13457999999999999999999999999999999999986521 24799999998
Q ss_pred ecCh---hc----ccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccc
Q 000907 738 PKNQ---ET----FTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSE---VNSKTREMFVEEVMELVELNPLRQALV 805 (1230)
Q Consensus 738 ~~~~---~~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~ 805 (1230)
++.. .. +++.++||+|++. +.|.+||.+++........... ....+..+++.++++.+||.+..+..
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~- 152 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM- 152 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH-
Confidence 7532 11 2357999999975 6788999999976422111000 11123345688999999997532211
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 806 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..+.+||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+..|+
T Consensus 153 -~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 153 -RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred -hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 1124579999999999999999999999999999999999999999999999764 999999999986 45566777
No 220
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-32 Score=297.88 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=170.2
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-C-C-eEEEEEEECCe
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT-R-G-YITGNITISGY 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~ 737 (1230)
++++|++.++... .+...+++||||++++||++||+|.|||||||+.++|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5678888877542 234679999999999999999999999999999999999876 3 3 35689999998
Q ss_pred ec---Chh----cccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCccccccccC
Q 000907 738 PK---NQE----TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEV-NSKTREMFVEEVMELVELNPLRQALVGL 807 (1230)
Q Consensus 738 ~~---~~~----~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 807 (1230)
++ +.+ -+.+.+++++|++ .+.|.+||.+.+.-....+. .. .+++..+++.++++.+|+.+.....-.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~- 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKS- 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhh-
Confidence 64 222 2346899999996 57899999998876654332 22 345566778999999999875433322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.+|||||||||.||.||+.+|++|+.||||++||...+.+|+++|+++.+ .|.++|++|||.+ -+.+..|+
T Consensus 150 -YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDr 223 (316)
T COG0444 150 -YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADR 223 (316)
T ss_pred -CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcce
Confidence 3568999999999999999999999999999999999999999999999986 5999999999987 56778887
No 221
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=7.6e-33 Score=309.59 Aligned_cols=208 Identities=20% Similarity=0.249 Sum_probs=165.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++..... ..+.+.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 789999988741100 0001234699999999999999999999999999999999998765 4799999998764
Q ss_pred h---hcccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 000907 741 Q---ETFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lS 814 (1230)
. ...++.++|++|++. +.+.+|+.|++.+...... ........+.++++++.+++. +..+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 2 123457999999874 5678899999987654321 123334445688999999994 444544 34799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||++|+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~ 219 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQ 219 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999998764 899999999986 55666777
No 222
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-33 Score=322.42 Aligned_cols=175 Identities=23% Similarity=0.356 Sum_probs=152.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCccCCCCCH
Q 000907 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 691 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998765 37999999987532 2245789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
+||+.+... ....++++++++.+++.+..++.. +.||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345789999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+.++..+.+.|++++++ |+|+|++||++. ++..+.|+
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~ 198 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADR 198 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCE
Confidence 999999999999998765 899999999986 66777787
No 223
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-33 Score=311.85 Aligned_cols=204 Identities=21% Similarity=0.272 Sum_probs=165.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.++... ..+.+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 378999998874110 01134699999999999999999999999999999999998765 479999999876
Q ss_pred Ch----hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 740 NQ----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
.. ...++.+||++|++. .+...||.|++.|..... .....+.+++++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 42 234678999999974 233469999998865422 2234445567899999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++.. +. ..|+
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~ 213 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADR 213 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCE
Confidence 99999999999999999999999999999999999999999998764 9999999999984 33 3666
No 224
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-33 Score=349.44 Aligned_cols=201 Identities=30% Similarity=0.430 Sum_probs=165.0
Q ss_pred CCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC
Q 000907 656 FEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS 735 (1230)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 735 (1230)
.....++|+|++++|+.++ +..+|+|+|+.|++||.+||+|||||||||++++|.+.+.| .+|+|.+|
T Consensus 346 ~~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~id 413 (1228)
T KOG0055|consen 346 SIKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLID 413 (1228)
T ss_pred ccccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEc
Confidence 3456899999999998542 45699999999999999999999999999999999998876 48999999
Q ss_pred CeecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCCccccccc
Q 000907 736 GYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL-------VELNPLRQALV 805 (1230)
Q Consensus 736 g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~ 805 (1230)
|.++.. +.+|..+|.|.|+|.++. .|++||+.|+. ++.+.++ +++..+. ..+.+-.|+.+
T Consensus 414 G~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~v 483 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLV 483 (1228)
T ss_pred CccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhcccc
Confidence 998643 567889999999997765 79999999852 1222222 2333322 24556678888
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 806 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|..++ +||||||||++|||||++||+|||||||||+||+++++.|++.|++. .+|+|.|+++|+.| .|-+ -|+
T Consensus 484 ge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLS-tIrn-aD~ 556 (1228)
T KOG0055|consen 484 GERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLS-TIRN-ADK 556 (1228)
T ss_pred cCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehh-hhhc-cCE
Confidence 87665 49999999999999999999999999999999999999999999876 57999999999988 3433 565
No 225
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=306.79 Aligned_cols=200 Identities=22% Similarity=0.319 Sum_probs=162.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-e--EEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-Y--ITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~--~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899988763 246999999999999999999999999999999999976532 1 479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. ........+.++++++.+++.+ ..++
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK---- 146 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC----
Confidence 87532 234567999999998887 899999987654321 1122333456778889888842 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 147 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~ 218 (259)
T PRK14260 147 -SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDF 218 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCe
Confidence 2457999999999999999999999999999999999999999999999864 699999999987 55666676
No 226
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-33 Score=304.06 Aligned_cols=196 Identities=22% Similarity=0.282 Sum_probs=161.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++ ..|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 56888888763 11 2389999999999999999999999999999998765 4799999998754
Q ss_pred hh-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 741 QE-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 741 ~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+..+++++++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 234679999999999999999999987532111 11 1233556889999999987777664 479999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++||++++.+|++++|||||+|||+.+++.+.+.|++++++ |+|+|+++|++. ++.+..|+
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 199 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPR 199 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998754 899999999987 45566676
No 227
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=305.56 Aligned_cols=200 Identities=22% Similarity=0.317 Sum_probs=160.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 477889988763 24699999999999999999999999999999999997532 1 1479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.+... ...++.++|++|++.+++ .|+.||+.+....+. ....+..++.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 234667999999988887 899999998654321 1123334556788888888753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||++. ++.+..|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDK 214 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCE
Confidence 45799999999999999999999999999999999999999999999985 4899999999976 55666676
No 228
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=306.84 Aligned_cols=204 Identities=22% Similarity=0.281 Sum_probs=162.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 488999998763 2469999999999999999999999999999999999764 21 1479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++. |++||+.+....+. .....+..++++++++.+++.+...... +...+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcc
Confidence 87631 2345679999999888875 99999987643321 1123334456788899988853211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.+..|+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 223 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQ 223 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 799999999986 55666776
No 229
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=305.18 Aligned_cols=200 Identities=22% Similarity=0.273 Sum_probs=161.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
-++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467888887762 246999999999999999999999999999999999975431 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++.. ...++.++|++|++.+++ .|++||+.+...... ........++++++++.+++.+ ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKK---- 143 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhC----
Confidence 87632 134567999999998887 899999988654321 1122334456788899998742 2232
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+..|+
T Consensus 144 -~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~ 215 (251)
T PRK14270 144 -SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDY 215 (251)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCE
Confidence 2457999999999999999999999999999999999999999999999865 689999999986 56677777
No 230
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=305.31 Aligned_cols=204 Identities=27% Similarity=0.332 Sum_probs=160.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899988763 2469999999999999999999999999999999999732 21 1379999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ..+++.++|++|++.+++ .||+||+.+....+. .......++.++++++.+++.+...... +..++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcc
Confidence 87631 234567999999988887 899999988643321 1122233456778888888753211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+..|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 216 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDR 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 699999999986 56667777
No 231
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=304.85 Aligned_cols=203 Identities=21% Similarity=0.300 Sum_probs=161.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISGY 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 737 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888888763 246999999999999999999999999999999999976421 24799999998
Q ss_pred ecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 738 PKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 738 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
+... ...++.++|++|++.+++ .|++||+.+...... .......++.+++.++.+++.+..+... +....+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 7532 234567999999998887 899999988653321 1122333455788888888854211111 122457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+..|+
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~ 214 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADY 214 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999864 799999999987 45566676
No 232
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.3e-32 Score=299.30 Aligned_cols=185 Identities=26% Similarity=0.330 Sum_probs=149.9
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCcc
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIH 757 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~ 757 (1230)
++.+.++++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+...+
T Consensus 27 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~ 95 (224)
T cd03220 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGF 95 (224)
T ss_pred hhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccC
Confidence 344455677899999999999999999999999999999999998765 47999999986421 1112334
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEe
Q 000907 758 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 758 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 837 (1230)
.+.+||+||+.+...... .......+.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++++||
T Consensus 96 ~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 96 NPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred CCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 567899999988654321 223334456788899999987777654 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 211 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDR 211 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999998777899999999986 34445565
No 233
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-32 Score=309.56 Aligned_cols=201 Identities=23% Similarity=0.293 Sum_probs=165.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEC
Confidence 4789999988741 1123599999999999999999999999999999999998765 479999999876
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|++. .++..||.||+.+..... .....+..++++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 42 234678999999974 577789999998764322 123334445688999999998776664 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ...|+
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~ 209 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDR 209 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999998765 9999999999874 3 24666
No 234
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-33 Score=295.80 Aligned_cols=188 Identities=26% Similarity=0.295 Sum_probs=166.6
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCc
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDI 756 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~ 756 (1230)
+-..-++|+|++++.||++.|||-||||||||+++|.++..+ .+|+|.++|.++.. .-+++.+++|+|...
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345679999999999999999999999999999999998775 48999999987532 224568999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 757 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
++|+.||.||..|+..++ ..+++++++++.+.++..||....+.+ +++|||||||||.+||||+.||+|||+
T Consensus 117 LlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLM 188 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLM 188 (386)
T ss_pred cccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEe
Confidence 999999999999997765 467788999999999999999999887 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|+|||--+.++++-|.++.++ ++|||++|||.. |-+..-|+
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~r 234 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDR 234 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccce
Confidence 9999999999999999988888644 899999999987 44566666
No 235
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.1e-32 Score=291.58 Aligned_cols=183 Identities=21% Similarity=0.313 Sum_probs=152.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+++ +|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccC
Confidence 56788887762 234555 9999999999999999999999999999998765 4799999998764
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
... ++.++|++|+..+++..||.||+.+..... . ..+.++++++.+++.+..++. .+.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 346899999988888899999998754321 1 123567888999987766654 34799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
++||||++.+|++++|||||+|||+.+++.+.+.|++..++|+|+|+++|++.
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999877677999999999986
No 236
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-32 Score=304.27 Aligned_cols=204 Identities=21% Similarity=0.276 Sum_probs=159.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECCe
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISGY 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~ 737 (1230)
-+++|+++.+. ++.+|+|+||++++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35677776652 3469999999999999999999999999999999999854 21 24799999998
Q ss_pred ecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 738 PKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 738 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
++.. ...++.++|++|++.+++. |+.||+.+....+. ........++.++++++.+++.+...+... ..+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhh
Confidence 7532 1346679999999888875 99999987643321 111223334567888999998652211111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+..|+
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~ 217 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDR 217 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCE
Confidence 99999999999999999999999999999999999999999999985 4899999999987 55566776
No 237
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-32 Score=304.06 Aligned_cols=204 Identities=24% Similarity=0.285 Sum_probs=160.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888887662 346999999999999999999999999999999999976532 2479999999
Q ss_pred eecC----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 737 YPKN----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 737 ~~~~----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
.++. ....++.++|++|++.+++ .||.||+.+...... ........+++++.++.+++.+....... .....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 8753 1234667999999998887 899999987643221 11223334557778888887532111111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~ 213 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDR 213 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999865 689999999986 56666776
No 238
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=336.12 Aligned_cols=201 Identities=26% Similarity=0.347 Sum_probs=167.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 78888888762 35699999999999999999999999999999999998765 3799999998753
Q ss_pred h---h-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 741 Q---E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~---~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. . ..++.++|++|++.+++.+||+|++.++...+.. ......+.+++++++++.+++.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 2 1 1245799999999999999999999886432110 11223334456889999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~ 210 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDD 210 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999986 45566777
No 239
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=308.17 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=161.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 478899988763 124699999999999999999999999999999999998765 479999999876
Q ss_pred ChhcccceEEEEccCCccC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 740 NQETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
.....++.++|++|++.+. ...+++|++.+....... ........++.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322334699999997642 234788888653211000 00111223445788899999987777654 469999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~ 211 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDY 211 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998877999999999986 45566666
No 240
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-32 Score=305.30 Aligned_cols=204 Identities=23% Similarity=0.282 Sum_probs=162.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 588999998763 246999999999999999999999999999999999986521 2579999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+....... ....
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-ENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCcc
Confidence 87642 2346789999999988886 99999987643321 11222334557888888888532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+..|+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~ 236 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDY 236 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999875 799999999986 45566776
No 241
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8e-34 Score=271.83 Aligned_cols=188 Identities=22% Similarity=0.329 Sum_probs=159.6
Q ss_pred cCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC---hhcccceEEEEccCCccC
Q 000907 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN---QETFTRISGYCEQNDIHS 758 (1230)
Q Consensus 682 ~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~ 758 (1230)
..++..+|+++|+.+++||..+|.||||||||||+|+++.+.++ .+|++.+.|++.+ .+.+|..++||.|.+.++
T Consensus 12 ~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 12 LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred hcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 34556799999999999999999999999999999999998765 4799999999864 357888999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
+. ||++|+.|.-.+|..+. ..+...+.++.+++.+..-+ ..+..||||||||++|+|-|..-|+||+|||
T Consensus 90 g~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~----k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GD-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILT----KNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred cc-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhc----chhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 85 99999999877764322 23446778888888764322 1245799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+||+.+++.|-++|-++. ++.+.++.+||++...+ ..+|+
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~-rha~k 203 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI-RHADK 203 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHh-hhhhe
Confidence 999999999999999998886 66899999999998544 66787
No 242
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-32 Score=305.56 Aligned_cols=198 Identities=23% Similarity=0.294 Sum_probs=161.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999998763 24699999999999999999999999999999999998642 12479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++.. ...++.++|++|++.+++. ||.||+.+....+. ... ...++++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87531 2346789999999888875 99999988654321 122 23456788999998853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+....|+
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dr 248 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDK 248 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCE
Confidence 457999999999999999999999999999999999999999999999875 489999999986 45556676
No 243
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=302.79 Aligned_cols=204 Identities=20% Similarity=0.259 Sum_probs=160.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 477889888763 246999999999999999999999999999999999987642 1259999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+..+... +....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 87532 2346789999999988875 999999886543211 112223445677788888753211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++-+..|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~ 215 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDW 215 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCE
Confidence 799999999999999999999999999999999999999999999884 6899999999986 44455566
No 244
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-32 Score=305.61 Aligned_cols=204 Identities=25% Similarity=0.300 Sum_probs=163.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999998873 356999999999999999999999999999999999986531 2479999999
Q ss_pred eecCh----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 737 YPKNQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 737 ~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
.++.. ...++.++|++|++.+++ .|++||+.+..... ......+..+.+.++++.+++.+..++... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234678999999998887 89999998764322 112333334456788899998653222111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dr 231 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDR 231 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999875 589999999986 55667776
No 245
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-32 Score=288.74 Aligned_cols=163 Identities=29% Similarity=0.412 Sum_probs=141.5
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677777652 24699999999999999999999999999999999998764 47999999987532
Q ss_pred -----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 742 -----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 742 -----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
...++.++|++|++.+++.+|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 24567899999999888889999987541 8999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+..|+
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 170 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADR 170 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999999876 899999999986 44445565
No 246
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-32 Score=303.26 Aligned_cols=205 Identities=21% Similarity=0.282 Sum_probs=163.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999998763 235999999999999999999999999999999999986642 1369999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ...++.++|++|+..+++ .|+.||+.+...... .....+..+++.++++.+++.+..+.... ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87521 234567999999988887 899999987643221 11222334567889999988542221111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.+..|+
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~ 220 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDF 220 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCE
Confidence 7999999999999999999999999999999999999999999999864 5899999999986 56677787
No 247
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-32 Score=302.41 Aligned_cols=201 Identities=23% Similarity=0.280 Sum_probs=160.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe---EEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY---ITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g 736 (1230)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467788887762 3469999999999999999999999999999999999865422 379999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.+... ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87632 2345679999999999999999999987643221 1122233455667777776542 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +++|+|+++|++. .+.+..|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~ 216 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMH-QAARVSDT 216 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999986 4799999999987 45556676
No 248
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.5e-32 Score=300.69 Aligned_cols=186 Identities=24% Similarity=0.294 Sum_probs=152.2
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eEEEEEEECCeecChhcc-cceEEEEccCCc--cCCCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGYPKNQETF-TRISGYCEQNDI--HSPYVT 762 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lt 762 (1230)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987641 147999999988653323 357999999974 557789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP---LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEP 839 (1230)
+.|++.+...... .......++++++++.+++.+ ..+.. +..||||||||++|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 112333456889999999973 34443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 840 TSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 840 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+|||+.++..+.+.|++++++ |+|||+++|++. ++....|+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 195 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADE 195 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999998764 899999999987 56666776
No 249
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-32 Score=302.52 Aligned_cols=204 Identities=26% Similarity=0.303 Sum_probs=160.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478899988763 346999999999999999999999999999999999975321 1379999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ...++.++|++|++.+++. ||+||+.+....+. .......++.++++++.+++.+....... ....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 2345679999999988874 99999998754332 11222334567788888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~ 217 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDY 217 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 35556676
No 250
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-32 Score=301.71 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=162.9
Q ss_pred CceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEE
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITI 734 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~ 734 (1230)
|..+..+++++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.+
T Consensus 6 ~~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 6 PIVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred CceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 3457777777655 3457999999999999999999999999999999999986531 24799999
Q ss_pred CCeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 735 SGYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 735 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
+|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . .....+.++++++.+++.+..+...+ ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 146 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VS 146 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CC
Confidence 9987532 23456799999998877 5999999988754321 1 12234567889999998643322221 23
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|+|+++|++. ++.+..|+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~ 217 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADT 217 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999985 4799999999987 45566776
No 251
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.9e-32 Score=303.05 Aligned_cols=198 Identities=22% Similarity=0.261 Sum_probs=159.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 737 (1230)
.++++|+++.+. +.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 578899988651 25999999999999999999999999999999999987641 14799999998
Q ss_pred ecChhcc-cceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCCCCC
Q 000907 738 PKNQETF-TRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL---RQALVGLPGVN 811 (1230)
Q Consensus 738 ~~~~~~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~~~~~~~ 811 (1230)
++..... ++.++|++|++. +.+..|+.+++.+...... ... .++.++++++.+++.+. .++. ++
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 8653222 357999999974 4566799999876433221 111 23567889999999762 3333 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~ 210 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADD 210 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999998764 899999999986 34455666
No 252
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-32 Score=309.31 Aligned_cols=205 Identities=20% Similarity=0.259 Sum_probs=164.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 736 (1230)
.++++|+++.+.. +.+.+|+|+|++|++||++||+|||||||||||++|+|.... .+.+|+|.+||
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5899999998741 234699999999999999999999999999999999997642 12479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN-SKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
.++.. ...++.++||+|++.+++ .|++||+.|..... ... .+..++.++++++.+++.+..++.++. ..
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AG 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-Cc
Confidence 98742 245678999999998875 79999999864321 112 222334567888888875433333333 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++||++. .+.+..|+
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Dr 293 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDE 293 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 57999999999999999999999999999999999999999999998865 799999999986 45566777
No 253
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-32 Score=302.06 Aligned_cols=200 Identities=24% Similarity=0.318 Sum_probs=160.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 736 (1230)
.+.++|+++++. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 378899988763 24699999999999999999999999999999999998642 1 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.+... ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.. ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR---- 143 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc----
Confidence 87532 234567999999988876 799999987643221 1122233456788889888842 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +++|||++||++. ++.+..|+
T Consensus 144 -~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~ 215 (251)
T PRK14251 144 -NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQ 215 (251)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCE
Confidence 245799999999999999999999999999999999999999999999985 4799999999987 45566676
No 254
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.8e-32 Score=303.06 Aligned_cols=200 Identities=24% Similarity=0.248 Sum_probs=160.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP- 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 738 (1230)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 478899988763 24699999999999999999999999999999999998765 37999999986
Q ss_pred ----cCh---hc----ccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000907 739 ----KNQ---ET----FTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQAL 804 (1230)
Q Consensus 739 ----~~~---~~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 804 (1230)
+.. .. .++.++|++|++. +.+.+|+.||+.+...... ........+.++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 432 11 2456999999973 6777899999876432211 1122233456788999999963 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+..|+
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~ 221 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHR 221 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 44455666
No 255
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.5e-33 Score=345.92 Aligned_cols=195 Identities=23% Similarity=0.350 Sum_probs=160.7
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.+. +++.+|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999987542 2346999999999999999999999999999999999988 5 37999999988
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 808 (1230)
+. ...+++.++||+|++.+++ .|++||+.++. ++.+. +.++++++..++. +-.|+.+|+.
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 64 3567889999999999886 59999998851 12222 3345555555543 3347778765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ ..||||||||++|||||++||+||+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~ 552 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQ 552 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCE
Confidence 4 4699999999999999999999999999999999999999999998875 5899999999995 3466777
No 256
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=335.06 Aligned_cols=202 Identities=26% Similarity=0.309 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 378889888762 34699999999999999999999999999999999998765 379999999876
Q ss_pred Chh----cccceEEEEccCCccCCCCCHHHHHHHHHHhc--C-C-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 740 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLR--L-S-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 740 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~--~-~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
... ..++.++|++|++.+++.+||+||+.+..... . . ......+..++++++++.+|+.+..++.+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 421 12356999999999999999999998753210 0 0 00122334466889999999987777664 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~ 214 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDR 214 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999999878999999999976 45566676
No 257
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-32 Score=304.62 Aligned_cols=200 Identities=21% Similarity=0.274 Sum_probs=159.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998763 2469999999999999999999999999999999999642 1 12479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.+... ...++.++|++|++.+++. |+.||+.+...... .......++.+++.++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87632 1345679999999988875 99999987643221 1122223455677888888752 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 232 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDR 232 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999864 689999999986 45566676
No 258
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-32 Score=305.63 Aligned_cols=200 Identities=22% Similarity=0.292 Sum_probs=159.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578999988763 2459999999999999999999999999999999999642 20 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 807 (1230)
.++.. ..+++.++|++|++.+++. ||.||+.+....+. .......++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1346689999999988875 99999998653321 112223345577888888874 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~ 250 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDY 250 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999864 689999999987 45566676
No 259
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-33 Score=315.72 Aligned_cols=196 Identities=23% Similarity=0.341 Sum_probs=164.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++|+. ...++|+|+|+++++||.+||+|+||||||||++.|+|..++ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 6899999999863 234699999999999999999999999999999999998765 479999999875
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCC
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-------QALVGLPG 809 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~ 809 (1230)
. +..+++.+++++|...+|. -|+++||..+. ++ ..++.+.++++..||++.. |+.+|+.
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PD----ASDEELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CC----CCHHHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 3 3446778999999887765 59999998752 11 2234577888888887654 4456654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+.+ +|+|+|++||+... .+.||+
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~--le~~dr 541 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG--LERMDR 541 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEeccccc--HhhcCE
Confidence 46799999999999999999999999999999999999999999998765 59999999999873 367887
No 260
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-32 Score=299.57 Aligned_cols=204 Identities=24% Similarity=0.330 Sum_probs=159.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899988763 2469999999999999999999999999999999999753 21 1479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.+.+.++.+++........ ...+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcc
Confidence 87631 234568999999988887 6999999886443211 122222345667778877642111111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||++. .+.+..|+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~ 216 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDK 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 589999999986 45566676
No 261
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-33 Score=262.28 Aligned_cols=182 Identities=25% Similarity=0.342 Sum_probs=155.5
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC---------hhcccceEEEEcc
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN---------QETFTRISGYCEQ 753 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---------~~~~~~~~~~v~q 753 (1230)
++..++|.||+++.+.||.+.++||||||||||++.|.=+..+ .+|+..+-|...+ ....|+.+|+|+|
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p--~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfq 89 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC--CCCeEEecccccccccCccHHHHHHHHHhhhhhhh
Confidence 4567899999999999999999999999999999999765443 3688888775321 1346788999999
Q ss_pred CCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000907 754 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 833 (1230)
Q Consensus 754 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~i 833 (1230)
+..++|.+||.|||.-+. +|. ...++++...+..++++.+.|.+.+|+. +-.|||||+|||+|||||+.+|++
T Consensus 90 qy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 90 QYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----ceecccchhhhHHHHHHHhcCCcE
Confidence 999999999999986542 222 2356666777889999999999999876 336999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 834 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 834 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
|++||||++|||+-..++++++++++..|.|-+++||.-.
T Consensus 163 llfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 9999999999999999999999999999999999999653
No 262
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.6e-32 Score=332.46 Aligned_cols=203 Identities=22% Similarity=0.331 Sum_probs=165.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56778887652 35699999999999999999999999999999999998764224799999998764
Q ss_pred hh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 000907 741 QE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-EVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lS 814 (1230)
.. ..++.++|++|++.+++.+||.||+.+........ ....+...++++++++.+++.+.. ++. ++.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 31 13456999999999999999999998764322111 112333445688999999997654 333 34799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~ 210 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDT 210 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999878999999999986 45566777
No 263
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-32 Score=332.35 Aligned_cols=202 Identities=29% Similarity=0.363 Sum_probs=167.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 378889988763 34699999999999999999999999999999999998765 379999999876
Q ss_pred Ch----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ..+++.++|++|++.+++.+||.||+.+....+........+..++++++++.+++.+..++.+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 32 1245679999999999999999999988532111111123344566889999999986666553 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~ 209 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDA 209 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999878999999999986 45566676
No 264
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.1e-32 Score=331.49 Aligned_cols=195 Identities=21% Similarity=0.318 Sum_probs=165.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488899998763 34699999999999999999999999999999999998765 379999999875
Q ss_pred Ch---hc-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. .. .++.+||++|++.+++.+||.||+.+... .....+++++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 42 11 23468999999999999999999987521 11223456788999999987777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~ 209 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADR 209 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999878999999999986 45566777
No 265
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.3e-32 Score=286.47 Aligned_cols=152 Identities=26% Similarity=0.446 Sum_probs=133.9
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 760 (1230)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 89999999999999999999999999999999998765 37999999987643 23456799999984 57888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCC
Q 000907 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 840 (1230)
+|++||+.+... ||||||||++||+||+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999876410 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 841 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+..|+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~ 173 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDR 173 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999998777899999999975 55565665
No 266
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-32 Score=302.47 Aligned_cols=203 Identities=18% Similarity=0.221 Sum_probs=159.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEEC
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITIS 735 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~ 735 (1230)
..+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3588999998763 346999999999999999999999999999999999975421 247999999
Q ss_pred CeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 736 GYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 736 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
|.+... ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.+++.++.+++......... ..+
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 159 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLK-EKG 159 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhc-CCc
Confidence 987531 2345789999999888874 99999987643321 11 1223445677888776421111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~ 229 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADW 229 (274)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 57999999999999999999999999999999999999999999999864 799999999986 55666777
No 267
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=7.5e-32 Score=301.48 Aligned_cols=208 Identities=24% Similarity=0.314 Sum_probs=163.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.... .+ + ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~-~~--~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG-LS--G-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc-cc--c-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 67889988763100 00 0 01135799999999999999999999999999999999998764 4799999998753
Q ss_pred h------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000907 741 Q------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 811 (1230)
. ...++.++|++|++ .+.+..|+.|++.+..... .........+.++++++.+++. +..++. .+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 4667889999987653211 1123334455688999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||++. .+.+..|+
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~ 221 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQR 221 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999998764 899999999986 45556676
No 268
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.5e-32 Score=299.30 Aligned_cols=196 Identities=26% Similarity=0.404 Sum_probs=156.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhH
Confidence 677888876531 124699999999999999999999999999999999998764 3799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCC
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG------LPGVN 811 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~ 811 (1230)
. ...++.++|++|++.+++ .|+.||+.+... ... .+.++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567999999998876 699999876311 111 2235677888888766554321 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++.. + +..|+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~ 207 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDR 207 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCE
Confidence 79999999999999999999999999999999999999999999998654 899999999863 3 66676
No 269
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-32 Score=302.77 Aligned_cols=200 Identities=23% Similarity=0.262 Sum_probs=158.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 588999998763 2359999999999999999999999999999999999764 1 12579999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 807 (1230)
.+... ...++.++|++|++.+++ .|+.||+.+....+. .......++.+.++++.+++. +..+.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~---- 163 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHD---- 163 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhc----
Confidence 87631 234667999999988887 499999988643221 112222234566777777543 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 164 -~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~ 235 (271)
T PRK14238 164 -NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDK 235 (271)
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCE
Confidence 2457999999999999999999999999999999999999999999999865 799999999986 45566676
No 270
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-32 Score=302.01 Aligned_cols=202 Identities=21% Similarity=0.285 Sum_probs=158.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899988763 24699999999999999999999999999999999997532 1 2479999999
Q ss_pred eecC-----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++. ....++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+..+... ...+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 8753 1234667999999988887 499999987643221 11 123345667778877743111111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~ 219 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDM 219 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 589999999986 56677777
No 271
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.3e-32 Score=303.23 Aligned_cols=195 Identities=24% Similarity=0.386 Sum_probs=148.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 356788776531 124699999999999999999999999999999999998765 3799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCC
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRE-----MFVEEVMELV--ELNPLRQALVGLPGV 810 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~ 810 (1230)
. ..+++.++|++|++.+++ .||.||+.+... ........ ...+++++.+ ++....+. .+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QG 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CC
Confidence 2 234677999999987765 699999976421 11111111 0112333333 33332222 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|++.. + +..|+
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~ 205 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADR 205 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCE
Confidence 5799999999999999999999999999999999999999999999986 48999999999973 3 34565
No 272
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-31 Score=298.23 Aligned_cols=201 Identities=22% Similarity=0.297 Sum_probs=159.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--e--EEEEEEEC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--Y--ITGNITIS 735 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~--~~G~i~~~ 735 (1230)
.+.++++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++. . +.|++.++
T Consensus 10 ~i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 37888888765 3456999999999999999999999999999999999986542 1 23555565
Q ss_pred CeecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 000907 736 GYPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGLP 808 (1230)
Q Consensus 736 g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 808 (1230)
|.+.. ....++.++|++|++.+++.+|++||+.+...... .....+..+.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 65432 22346789999999999999999999988643221 1123334456788999999864 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||+|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+..|+
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~ 221 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADY 221 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999998864 699999999986 45566776
No 273
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.5e-31 Score=297.57 Aligned_cols=198 Identities=23% Similarity=0.310 Sum_probs=157.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478899988763 2469999999999999999999999999999999999721112479999999875
Q ss_pred Ch---hcccc-eEEEEccCCccCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 740 NQ---ETFTR-ISGYCEQNDIHSPYVTVYESLLYSAWLRLS----SEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 740 ~~---~~~~~-~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
.. ...++ .++|++|++.+++.+|+.+++.+....... ......+..++++++++.+++. +..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 42 12222 478999999999999999999875432110 0111222345678889999986 34444432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++..
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2499999999999999999999999999999999999999999999988779999999999763
No 274
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.2e-31 Score=298.03 Aligned_cols=204 Identities=23% Similarity=0.299 Sum_probs=159.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 467888887652 3469999999999999999999999999999999999743 11 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ...++.++|++|++.+++. |+.||+.+...... ....+..++++.+.++.+++.+...... +....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcc
Confidence 87532 2346689999999988875 99999987643221 1122334466788899988854221111 12245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|++. ++.+..|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~ 214 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKY 214 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCE
Confidence 799999999999999999999999999999999999999999999985 4899999999986 44455554
No 275
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.98 E-value=1.1e-31 Score=298.70 Aligned_cols=200 Identities=26% Similarity=0.281 Sum_probs=158.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP- 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 738 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 377888888763 24589999999999999999999999999999999998765 47999999875
Q ss_pred ----cCh---h----cccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000907 739 ----KNQ---E----TFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQAL 804 (1230)
Q Consensus 739 ----~~~---~----~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 804 (1230)
... . ..++.++|++|++. +.+.+|+.||+.+..... .. .......+.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12356899999974 456679999987543211 11 111233456788999999963 45544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |.|+|+++|++. .+.+..|+
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~ 218 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQR 218 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 3579999999999999999999999999999999999999999999998654 899999999986 45555676
No 276
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.98 E-value=4.4e-32 Score=283.07 Aligned_cols=160 Identities=28% Similarity=0.441 Sum_probs=137.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++. +++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEccc
Confidence 56777776531 124599999999999999999999999999999999998765 37999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
..+++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 345678999999988777 4998886 899999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +..|+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~ 164 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADR 164 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCE
Confidence 9999999999999999999999999999999999999998777999999999985 33 45665
No 277
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.98 E-value=7.1e-32 Score=297.83 Aligned_cols=184 Identities=23% Similarity=0.329 Sum_probs=153.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc--
Confidence 378889888763 24699999999999999999999999999999999998765 4799999872
Q ss_pred ChhcccceEEEEccCCccCCCC--CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYV--TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
..++|++|++.+++.+ |+.+++.+. .... ++.+.++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 3589999998777653 777776431 1111 234678899999987776653 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~ 190 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDE 190 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999987 55566776
No 278
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5e-32 Score=330.19 Aligned_cols=190 Identities=24% Similarity=0.309 Sum_probs=158.1
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCCccCCC
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQNDIHSPY 760 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ 760 (1230)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 45799999999999999999999999999999999998765 37999999987642 1235679999999988899
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCC
Q 000907 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 840 (1230)
+||.||+.+.............+..++++++++.+++.+..++.+ ..|||||||||+||+||+.+|++|+|||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987532110101123333456889999999987766654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 841 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~ 203 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDE 203 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999878999999999986 45566676
No 279
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.98 E-value=1.8e-32 Score=299.76 Aligned_cols=199 Identities=24% Similarity=0.361 Sum_probs=156.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPT----------RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCch
Confidence 5889999988741 1123599999999999999999999999999999999998765 479999999865
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNS---KTREMFVEEVMELV--ELNPLRQALVGLPGVN 811 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~ 811 (1230)
.. ...++.++|++|++.+++ .||+||+.+.... ..... ......+++.++.+ |+.+..+.. ++
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~ 149 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GS 149 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CC
Confidence 32 234567999999988776 6999999764321 11000 11112346777777 666554443 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++.. + +..|+
T Consensus 150 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~ 217 (226)
T cd03248 150 QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQ 217 (226)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCE
Confidence 7999999999999999999999999999999999999999999999865 6899999999873 3 33665
No 280
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=2.6e-32 Score=300.28 Aligned_cols=194 Identities=26% Similarity=0.325 Sum_probs=150.1
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhh
Confidence 56777776631 113599999999999999999999999999999999998765 47999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCC
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM-----FVEEVMELV--ELNPLRQALVGLPGVN 811 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~ 811 (1230)
...++.++|++|++.+++ .||+||+.+... ........+ .+++.++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRP-----GATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 234567999999988876 699999976421 111111111 134444444 444443332 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++. +|+|||++||++. ++. ..|+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~ 205 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TIE-NADR 205 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCE
Confidence 799999999999999999999999999999999999999999999986 4899999999996 333 3666
No 281
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.98 E-value=4.5e-32 Score=338.75 Aligned_cols=198 Identities=23% Similarity=0.303 Sum_probs=163.6
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++|+++. +++.+|+|+|+++++||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 36999999998842 234699999999999999999999999999999999998875 37999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 808 (1230)
.+. ..+++.++||+|++.+++ .|++||+.++. +...+ ++.++++++..++. +-.|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 643 457788999999999886 69999998641 11122 23356666666643 3357777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ +.||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ....+|+
T Consensus 478 g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~ 547 (582)
T PRK11176 478 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADE 547 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 4 5799999999999999999999999999999999999999999998874 5799999999995 4567887
No 282
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.2e-31 Score=302.72 Aligned_cols=206 Identities=25% Similarity=0.320 Sum_probs=161.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 736 (1230)
.+.++|+++.+. ++.+|+++|+++++||+++|+|+|||||||||++|+|..++ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999998642 13479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC---------CC-CHHHHHHHHHHHHHHcCCCccc
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS---------EV-NSKTREMFVEEVMELVELNPLR 801 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~---------~~-~~~~~~~~~~~~l~~l~l~~~~ 801 (1230)
.++.. ...++.++|++|++.+++ .||+||+.+....+... .. .....++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 234567999999988887 59999999864322100 01 1122345678889999885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHh
Q 000907 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 881 (1230)
Q Consensus 802 ~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd 881 (1230)
+.... ..++.||||||||++||+||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 22211 12467999999999999999999999999999999999999999999999876 589999999987 4556667
Q ss_pred c
Q 000907 882 A 882 (1230)
Q Consensus 882 ~ 882 (1230)
+
T Consensus 268 ~ 268 (305)
T PRK14264 268 Q 268 (305)
T ss_pred E
Confidence 6
No 283
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.98 E-value=3.4e-32 Score=345.16 Aligned_cols=194 Identities=28% Similarity=0.371 Sum_probs=162.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 36999999999842 234699999999999999999999999999999999998875 37999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+. ...+++.+|||+|++.+++ .|++||+.++. + .+ ++.+.++++..++.+ -.|+.+|+.
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 3567889999999999886 59999998741 1 12 234566777776654 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|+++|+++ ..+.+|+
T Consensus 586 G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~ 653 (686)
T TIGR03797 586 G-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADR 653 (686)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCE
Confidence 4 579999999999999999999999999999999999999999999875 589999999985 3466777
No 284
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.98 E-value=1.8e-31 Score=296.44 Aligned_cols=196 Identities=27% Similarity=0.325 Sum_probs=152.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+..+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788887663 34699999999999999999999999999999999998421124799999998753
Q ss_pred h---hc-ccceEEEEccCCccCCCCCHHHHHHHHHH-hcCC-C--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000907 741 Q---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAW-LRLS-S--EVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~~~~-~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 811 (1230)
. .. .++.++|++|++.+++.+|+.+++.+... ++.. . ........+++++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 2 11 23568999999988888887777654321 1100 0 011122345678888999985 3444332 12
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 69999999999999999999999999999999999999999999998877899999999976
No 285
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.98 E-value=8.5e-32 Score=336.40 Aligned_cols=195 Identities=24% Similarity=0.339 Sum_probs=163.5
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.++. ++.+|+|+|+++++||.+||+|+||||||||+|+|+|..+|. +|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEECCEE
Confidence 36999999998841 235999999999999999999999999999999999988763 7999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
++ ...+++.++||+|++.+++. |++||+.++. ..+ ++.++++++.+|+.+ -.|+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 35678899999999999885 9999998752 112 234677777777653 345666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+
T Consensus 474 g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~--~l~~~D~ 543 (592)
T PRK10790 474 G-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLS--TIVEADT 543 (592)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 3 4699999999999999999999999999999999999999999999875 4799999999984 4566787
No 286
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.98 E-value=1.1e-31 Score=296.80 Aligned_cols=182 Identities=24% Similarity=0.350 Sum_probs=152.8
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCccCCCCCHH
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVY 764 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~ 764 (1230)
+|+|+|+++++||+++|+||||||||||+++|+|..++ +|+|.++|.++.. ...++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 79999999999999999999999999999999998642 7999999987642 23345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEeEEe
Q 000907 765 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 837 (1230)
Q Consensus 765 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~-------~p~illlD 837 (1230)
||+.+.... ........+.++++++.+++.+..++.+ +.||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875211 1122333456789999999987666553 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~ 202 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADR 202 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999998777999999999986 45566676
No 287
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.98 E-value=7.7e-32 Score=310.47 Aligned_cols=202 Identities=27% Similarity=0.384 Sum_probs=174.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|++.++ +..++|+||||++++||++||+|.||||||||+|+|+|..++ .+|+|.+||++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEc
Confidence 46777777655 567899999999999999999999999999999999998875 489999999986
Q ss_pred Ch----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 740 NQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-SSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
.. .....-++.|+|+..+.|++||.||+.++...+. ..-.+.+...++..++++.+++....++.++ .||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 42 2345678999999999999999999987654433 1234556667788999999999644666654 699
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||.|.|||||..+++||+||||||+|+....+.+.+.+++++++|.+||++||... |+|+..|+
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~Dr 214 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADR 214 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999999999999999999886 89999998
No 288
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3e-31 Score=296.78 Aligned_cols=205 Identities=22% Similarity=0.255 Sum_probs=160.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eEEEEEEEC
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITIS 735 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~ 735 (1230)
..++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ + ..+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3588999998763 24699999999999999999999999999999999998653 1 147999999
Q ss_pred CeecC-------hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 736 GYPKN-------QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 736 g~~~~-------~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
|.+.. ...+++.++|++|++.+++. |++||+.+...... .......++.+++.++.+++.+....... .
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLG-D 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHh-C
Confidence 97642 12346679999999988885 99999987643221 11112223556778888877421111111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
....||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 2457999999999999999999999999999999999999999999999865 699999999986 45566776
No 289
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.98 E-value=6.1e-32 Score=334.77 Aligned_cols=197 Identities=27% Similarity=0.418 Sum_probs=164.4
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.++. +++.+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999998841 124699999999999999999999999999999999998775 37999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL------RQALVGLPG 809 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------~~~~~~~~~ 809 (1230)
+.. ..+++.++||+|++.+++ .|++||+.++. + +. .++.++++++..++.+. .|+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 643 467788999999998886 59999998742 1 11 23446778888887654 35666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++. ...+|+
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~ 542 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDR 542 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCE
Confidence 35699999999999999999999999999999999999999999999875 58999999999963 345776
No 290
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.98 E-value=2e-31 Score=308.97 Aligned_cols=208 Identities=22% Similarity=0.281 Sum_probs=173.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 737 (1230)
-++++|++..+... .+...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 48899999887532 22357999999999999999999999999999999999987654 25799999998
Q ss_pred ecC---h----hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 738 PKN---Q----ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 738 ~~~---~----~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
++. . ..+.+.++|++|++ .+.|.+|+.+.+.-....+.. ...++..+++.++++..||.+.... +.
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 642 1 12446899999996 467778999988776655542 2366777889999999999887655 33
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+++||||||||+.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+-+.-|+
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDr 224 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADR 224 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCe
Confidence 4678999999999999999999999999999999999999999999999974 5999999999997 45667787
No 291
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=3.1e-32 Score=298.70 Aligned_cols=196 Identities=24% Similarity=0.359 Sum_probs=150.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. +.+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 467888888763 123599999999999999999999999999999999998765 379999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV------GLPGV 810 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~------~~~~~ 810 (1230)
.. ..+++.++|++|++.+++. |+.||+.+... .... ..+++.++.+++.+..+... .....
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2346679999999887775 99999976421 1111 12334444444433222110 01124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++.. + +..|+
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 206 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADK 206 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCE
Confidence 6799999999999999999999999999999999999999999999985 58999999999863 3 34565
No 292
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.98 E-value=3.6e-32 Score=299.93 Aligned_cols=195 Identities=25% Similarity=0.378 Sum_probs=147.3
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhh
Confidence 56777776531 1124699999999999999999999999999999999998764 47999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCC
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM-----FVEEVMELV--ELNPLRQALVGLPGVN 811 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~ 811 (1230)
...++.++|++|++.+++ .||+||+.+.... .......+ .+.+.++.+ ++....+. .++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeecc-----CCc
Confidence 234567999999988776 6999999764211 11111110 011222222 22222222 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||++|+.+|++|+|||||+|||+.+++.+.+.|++++ +|+|||+++|++.. + +..|+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~ 206 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADL 206 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCE
Confidence 799999999999999999999999999999999999999999999986 79999999999863 3 35676
No 293
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.97 E-value=5.4e-32 Score=333.90 Aligned_cols=196 Identities=28% Similarity=0.431 Sum_probs=162.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++++. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++. +|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEeh
Confidence 6999999999852 1246999999999999999999999999999999999988763 79999999986
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
. ...+++.++||+|++.+++ .|++||+.++. + ..+ ++.++++++..++.+ -.|+.+|..+
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 4 3467788999999998886 69999998742 1 112 233566677766653 2466666543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+++|++++||||||+||+.+++.+.+.++++. +++|+|+++|+++ ....+|+
T Consensus 457 -~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ 525 (529)
T TIGR02857 457 -AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADR 525 (529)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCE
Confidence 4699999999999999999999999999999999999999999998874 6899999999985 3456675
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=2.6e-31 Score=326.28 Aligned_cols=198 Identities=23% Similarity=0.294 Sum_probs=160.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCeEEEEEEECC--
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK--TRGYITGNITISG-- 736 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~--~~~~~~G~i~~~g-- 736 (1230)
++++|+++++ +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++ .+|+|.++|
T Consensus 1 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p--~~G~i~~~~~~ 65 (520)
T TIGR03269 1 IEVKNLTKKF-------------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIYHVAL 65 (520)
T ss_pred CEEEEEEEEE-------------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC--CceEEEEeccc
Confidence 3567787765 2356999999999999999999999999999999999975 33 479999872
Q ss_pred ---------------------eec----------Ch---hcccceEEEEccC-CccCCCCCHHHHHHHHHHhcCCCCCCH
Q 000907 737 ---------------------YPK----------NQ---ETFTRISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNS 781 (1230)
Q Consensus 737 ---------------------~~~----------~~---~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~ 781 (1230)
.++ .. ...++.++|++|+ +.+++.+||+|++.+..... ....
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~ 142 (520)
T TIGR03269 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEG 142 (520)
T ss_pred cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCH
Confidence 211 00 1235679999997 67888899999998865432 1233
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 000907 782 KTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD- 860 (1230)
Q Consensus 782 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~- 860 (1230)
.+.+++++++++.+|+.+..++.+ +.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 217 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 444567899999999987766653 57999999999999999999999999999999999999999999999865
Q ss_pred CCCEEEEEecCCCHHHHHHHhc
Q 000907 861 TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 861 ~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.|+|||++||++. .+.+..|+
T Consensus 218 ~g~tviivtHd~~-~~~~~~d~ 238 (520)
T TIGR03269 218 SGISMVLTSHWPE-VIEDLSDK 238 (520)
T ss_pred cCcEEEEEeCCHH-HHHHhcCE
Confidence 4899999999986 34556676
No 295
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=3.7e-31 Score=308.04 Aligned_cols=176 Identities=20% Similarity=0.299 Sum_probs=146.3
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
+.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 4699999999999999999999999999999999998765 379999999641 1222344567789999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCH
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~ 845 (1230)
++.+..... .....+..+.++++++.+++.+..+..+ +.||||||||++|||||+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 998754332 1233344456788999999987776653 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 846 RAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 846 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~Dr 212 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTK 212 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999998777999999999986 55566676
No 296
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=1.5e-31 Score=297.31 Aligned_cols=195 Identities=23% Similarity=0.313 Sum_probs=157.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. +...+|+|+|++|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999988741 23459999999999999999999999999999999999875 269999999876
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL------PGV 810 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~~ 810 (1230)
.. ..+++.++|++|++.+++ .|++||+.... ... ++.+.+.++.+||.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 42 345678999999999887 49999996321 112 23456778888887655543321 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. +++|||+++|++. .+. ..|+
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dr 205 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQR 205 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCE
Confidence 4699999999999999999999999999999999999999999999874 5899999999985 444 3676
No 297
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=7e-32 Score=253.29 Aligned_cols=181 Identities=24% Similarity=0.292 Sum_probs=156.2
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCeecCh-hcccceEEEEccCCccCCCC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYV 761 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~l 761 (1230)
+++.+|-|+|++|.+||++-|||||||||||||..+.|...+. ..+|++++|+++++. ..-+|.+|+.+||+.+||.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 4578999999999999999999999999999999999976543 578999999998764 34578999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 762 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 762 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
+|.+|+.|+. |.......++..++..++..||....+.. +..||||||-|+++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9999999863 44444556777789999999999877654 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH-HHhCCCEEEEEecCCC
Q 000907 842 GLDARAAAVVMRTVRN-TVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~~~ 873 (1230)
.||..-+.++.+.+-. ....|.-+|.+|||..
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999886644 4456999999999864
No 298
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.97 E-value=7.3e-32 Score=301.23 Aligned_cols=209 Identities=28% Similarity=0.412 Sum_probs=171.3
Q ss_pred CCcccCCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEE
Q 000907 650 RGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT 729 (1230)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~ 729 (1230)
..+.+|.+...++.+++++..+ ..++.+|+|+||.+.+||.+||+||||||||||.|+|.|.-++ .+
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p--~~ 390 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TS 390 (580)
T ss_pred CCCCCCCCCceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc--CC
Confidence 4467888888999999998432 2346899999999999999999999999999999999997664 47
Q ss_pred EEEEECCeecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHHHcCCCccc
Q 000907 730 GNITISGYPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSK-----TREMFVEEVMELVELNPLR 801 (1230)
Q Consensus 730 G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l~l~~~~ 801 (1230)
|.|.+||.+.+ .+.+-+.+||.||+-.+|+ -||.||+.- ...+.+.+ .+...+.|++ +.+.+-.
T Consensus 391 G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~GY 462 (580)
T COG4618 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQGY 462 (580)
T ss_pred CcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCCc
Confidence 99999998764 3567789999999999987 599999942 22222221 1112233333 3456667
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHh
Q 000907 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 881 (1230)
Q Consensus 802 ~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd 881 (1230)
||.+|+.+ ..||||||||+++||||-.||.+++||||-|+||.+.+..+.+.|.+.+++|.|+|+++|.|+ +....|
T Consensus 463 dT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~D 539 (580)
T COG4618 463 DTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVD 539 (580)
T ss_pred cCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcc
Confidence 89998765 579999999999999999999999999999999999999999999999999999999999997 556777
Q ss_pred c
Q 000907 882 A 882 (1230)
Q Consensus 882 ~ 882 (1230)
+
T Consensus 540 k 540 (580)
T COG4618 540 K 540 (580)
T ss_pred e
Confidence 6
No 299
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=8.8e-31 Score=290.48 Aligned_cols=203 Identities=19% Similarity=0.271 Sum_probs=161.4
Q ss_pred ceeEEeeeEEEEecCc----cccc--ccc-cCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEE
Q 000907 659 FSLTFDEITYSVDMPQ----EMKR--RGV-HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGN 731 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~----~~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~ 731 (1230)
+.+.++|++..++... .++. .+. ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceE
Confidence 4678888887776421 1111 111 12456799999999999999999999999999999999998765 3799
Q ss_pred EEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 732 ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 732 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
|.++|. +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..+.. ++
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999984 346677777778899999998754332 123334445567888888988766654 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~ 212 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTK 212 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCE
Confidence 79999999999999999999999999999999999999999999998777999999999976 45556676
No 300
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=5e-32 Score=336.45 Aligned_cols=196 Identities=29% Similarity=0.424 Sum_probs=161.6
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|+++.|+. ++.+|+|+|++++|||.+||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 46999999998852 45799999999999999999999999999999999998875 47999999988
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-------LNPLRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 808 (1230)
++ ...+++.++||+|++.+|. -||+||+.++.. +.++++ ++++++..+ +.+-.|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEE----IEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCcccccceecCC
Confidence 64 3567889999999999988 899999998621 122222 333333332 233568888854
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++||||+++||+||+||||||+||+.++..+.+.++++. +|+|+++++|+++ .+- ..|+
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~-~aD~ 532 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIK-NADR 532 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHH-hCCE
Confidence 35699999999999999999999999999999999999999999999776 6789999999996 333 3776
No 301
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=2.4e-31 Score=284.23 Aligned_cols=169 Identities=27% Similarity=0.325 Sum_probs=139.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|.....+.+|+|.+||.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 35677777652 34699999999999999999999999999999999998411124799999998764
Q ss_pred h---hc-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. .. .++.++|++|++.+++..|+++++. .. .+.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHH
Confidence 3 12 2345999999998888888877650 00 1359999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-HHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~-~fd~ 882 (1230)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+ ..|+
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~ 174 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDR 174 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCE
Confidence 999999999999999999999999999999999999999998777899999999987 4444 5676
No 302
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.97 E-value=8.8e-32 Score=343.06 Aligned_cols=195 Identities=27% Similarity=0.364 Sum_probs=161.2
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++|+|+. .++.+|+|+|++|++||.+||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 36999999999852 234699999999999999999999999999999999998875 37999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+. ...+++.+|||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+ -.|+.+|+.
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 64 3467889999999998885 69999997631 1 222 233556666666543 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|++ .++|+|+++|+++ ....+|+
T Consensus 613 G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~ 680 (710)
T TIGR03796 613 G-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDE 680 (710)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCE
Confidence 4 57999999999999999999999999999999999999999999975 4899999999986 3455777
No 303
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=1.6e-31 Score=280.49 Aligned_cols=163 Identities=26% Similarity=0.445 Sum_probs=137.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. .++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHH
Confidence 357788876631 113599999999999999999999999999999999998765 3799999998753
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ..+++.++|++|++.+++ .|++||+ ...||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 234677999999987775 6888886 135999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++|+|||||+|||+.+++.+++.|+++. +++|||+++|++.. + +..|+
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 165 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDK 165 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCE
Confidence 99999999999999999999999999999999999999885 58999999999873 3 34565
No 304
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1e-31 Score=296.04 Aligned_cols=193 Identities=26% Similarity=0.384 Sum_probs=147.6
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhhh
Confidence 5677777652 124599999999999999999999999999999999998764 47999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCC
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ-------ALVGLPGVN 811 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~~~ 811 (1230)
..+++.++|++|+..+++ .|++||+.+... ...... +.+.++..++.+..+ +... ...+
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCC
Confidence 234567999999988775 699999977421 111111 223333333322211 1111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++.. + ...|+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~ 204 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADK 204 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCE
Confidence 7999999999999999999999999999999999999999999999876 9999999999873 3 33565
No 305
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-31 Score=275.92 Aligned_cols=204 Identities=22% Similarity=0.339 Sum_probs=166.9
Q ss_pred CceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCe
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 737 (1230)
+.-+.++|++..+ +++.+|+|+|++|+|||-.+|+|||||||||||++++|..++. +|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeee
Confidence 3458899998765 4678999999999999999999999999999999999987764 799999998
Q ss_pred ecCh----hcccceEEEEccC--CccCCCCCHHHHHHHHH--HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 738 PKNQ----ETFTRISGYCEQN--DIHSPYVTVYESLLYSA--WLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 738 ~~~~----~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
+... .+.|+.+|+|.-. ..+.+..+|+|-+.-+. ..-.......++..+++..+++.+|+.+.+|+..+
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--- 170 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG--- 170 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh---
Confidence 7532 4568899999743 34455678888775332 12222212334556778999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||-|||||+-|||||+++|++|+||||++|||...++.+.+.|.+++.. +.++|++||.+. |+-.+|++
T Consensus 171 --~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th 242 (257)
T COG1119 171 --SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTH 242 (257)
T ss_pred --hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccce
Confidence 69999999999999999999999999999999999999999999998755 889999999986 66566665
No 306
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.2e-31 Score=327.99 Aligned_cols=204 Identities=19% Similarity=0.238 Sum_probs=165.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+... .+.+.+|+||||++++||++||+||||||||||+++|+|..++. +|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--GGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CeEEEECCEEe
Confidence 48899999887421 12357999999999999999999999999999999999987653 69999988632
Q ss_pred -------------Chh---cc-cceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 000907 740 -------------NQE---TF-TRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP- 799 (1230)
Q Consensus 740 -------------~~~---~~-~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~- 799 (1230)
... .. ++.+|||+|++ .+++.+||.||+.+...... .....+..++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 111 12 24689999997 67888999999998754321 2234445567889999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHH
Q 000907 800 --LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDI 876 (1230)
Q Consensus 800 --~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i 876 (1230)
..+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23443 4579999999999999999999999999999999999999999999999755 999999999986 45
Q ss_pred HHHHhc
Q 000907 877 FEAFDA 882 (1230)
Q Consensus 877 ~~~fd~ 882 (1230)
.+..|+
T Consensus 233 ~~~adr 238 (623)
T PRK10261 233 AEIADR 238 (623)
T ss_pred HHhCCE
Confidence 566787
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=4.5e-31 Score=272.94 Aligned_cols=156 Identities=28% Similarity=0.411 Sum_probs=132.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 1 i~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC---
Confidence 35678877652 124699999999999999999999999999999999998764 3799999873
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
+.++|++|++.++ ..|++||+.+. ..+.||||||||
T Consensus 64 -----~~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~r 99 (166)
T cd03223 64 -----EDLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQR 99 (166)
T ss_pred -----ceEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHH
Confidence 5789999998764 57999998642 024699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||+.+|++++|||||+|||+.+++.+.+.++++ ++|+|++||++. .....|+
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~ 156 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDR 156 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCE
Confidence 99999999999999999999999999999999999875 689999999985 2355665
No 308
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.97 E-value=1.2e-31 Score=341.45 Aligned_cols=196 Identities=23% Similarity=0.364 Sum_probs=161.3
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+ +++.+|+|+|++|++||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEE
Confidence 3699999999884 124699999999999999999999999999999999998875 47999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+. ...+++.+|||+|++.+++. |++||+.++.. .+.+ ++.+.++++..++.+ -.|+.+|+.
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 54 35678899999999998864 99999987521 1122 233455666655533 346777764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ +|+|+|+++|+++ ....+|+
T Consensus 609 G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~ 677 (708)
T TIGR01193 609 G-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDK 677 (708)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCE
Confidence 3 579999999999999999999999999999999999999999999875 5899999999996 3466777
No 309
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.8e-32 Score=268.46 Aligned_cols=188 Identities=24% Similarity=0.387 Sum_probs=161.8
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccC
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQN 754 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~ 754 (1230)
+..+.++++.+|+++|+++++|.+++++|||||||||||.+++.+.+. .+|+|.++|.++.. ..+.+.++..-|+
T Consensus 6 nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 6 NVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred hhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecccCChHHHHHHHHHHHhh
Confidence 334455778999999999999999999999999999999999987764 47999999998643 4566778888999
Q ss_pred CccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEe
Q 000907 755 DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 834 (1230)
Q Consensus 755 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~il 834 (1230)
......+||+|-+.|+..... ......+....+++.++.++|+++.|+.. .+||||||||.-||+.++.+.+.+
T Consensus 84 N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 84 NHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred chhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEE
Confidence 988899999999998733221 12233455677999999999999999875 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 000907 835 FMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 873 (1230)
Q Consensus 835 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 873 (1230)
+||||.++||...+..+++.||+++++ |+||+++.||-+
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 999999999999999999999999876 999999999976
No 310
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=6.8e-31 Score=322.95 Aligned_cols=206 Identities=20% Similarity=0.251 Sum_probs=164.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
-++++|+++.+... .+.+.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37889998887310 01257999999999999999999999999999999999987641 2479999999
Q ss_pred eecChh------cc-cceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---cccc
Q 000907 737 YPKNQE------TF-TRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL---RQAL 804 (1230)
Q Consensus 737 ~~~~~~------~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~ 804 (1230)
.++... .. ++.+||++|++. +.+.+|+.|++.+...... .....+..++++++++.+++.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 875321 12 257999999974 6677899999876532211 22344455678999999999753 3444
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+..|+
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 226 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADR 226 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCE
Confidence 4579999999999999999999999999999999999999999999998765 899999999987 44566777
No 311
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.97 E-value=1.1e-31 Score=339.76 Aligned_cols=195 Identities=26% Similarity=0.398 Sum_probs=159.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++|+.. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.++
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 69999999998521 134699999999999999999999999999999999998875 379999999986
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
+. ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+ -.|+.+|+.+
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 43 457788999999998876 69999998752 1 122 234566777766643 3466676543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+||||||||++|||||+++|+|++||||||+||+.+++.+.+ .. ..+++|+|+++|+++ ..+.+|+
T Consensus 616 -~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~ 682 (711)
T TIGR00958 616 -SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQ 682 (711)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCE
Confidence 5799999999999999999999999999999999999999988 22 236899999999985 3466776
No 312
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=2.8e-31 Score=298.05 Aligned_cols=202 Identities=24% Similarity=0.340 Sum_probs=175.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+++++++..+ +...+++|||+++++||+.||+|.||||||||+++|.|.+.|. +|+|.+||++.
T Consensus 4 ~l~~~~itK~f-------------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~--~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRF-------------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD--SGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEc-------------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC--cceEEECCEEe
Confidence 46777777655 4578999999999999999999999999999999999998764 89999999985
Q ss_pred Ch----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.- ...+..||+|.|+..+.|++||.||+..+..-............++++++.+.+||.-..|.+++ .||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 32 23456799999999999999999999887533222234555667789999999999877777765 5999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||.|-++|.++|++|+|||||+-|-|....++++.|++++++|+|||++||... |+.+..|+
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDr 209 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADR 209 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCe
Confidence 9999999999999999999999999999999999999999999999999999999987 78888898
No 313
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.97 E-value=1.6e-31 Score=339.37 Aligned_cols=197 Identities=26% Similarity=0.408 Sum_probs=163.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 36999999999842 234699999999999999999999999999999999998875 37999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
++. ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++.+ -.|+.+|+.
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 643 567889999999999887 59999998641 1122 233555666655533 346777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+
T Consensus 599 G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~ 668 (694)
T TIGR03375 599 G-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDR 668 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCE
Confidence 4 5699999999999999999999999999999999999999999998875 5899999999996 3466777
No 314
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=2.4e-31 Score=328.43 Aligned_cols=198 Identities=27% Similarity=0.396 Sum_probs=158.7
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++++. +++.+|+|+|++++|||.++|+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEe
Confidence 36999999998842 234689999999999999999999999999999999998775 37999999988
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 808 (1230)
... ..+++.++||+|++.+++. |++||+.+.. ...+.+ .+.+.++..++. +-.|+.+|..
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 451 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG 451 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC
Confidence 643 4567889999999998875 9999997531 112222 233333333322 2235556553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.+|+
T Consensus 452 -g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~ 522 (544)
T TIGR01842 452 -GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDK 522 (544)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCE
Confidence 4579999999999999999999999999999999999999999999988666899999999986 3466776
No 315
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.3e-31 Score=290.19 Aligned_cols=195 Identities=24% Similarity=0.318 Sum_probs=153.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEh
Confidence 3678899887631 124699999999999999999999999999999999998764 479999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA-------LVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 809 (1230)
.. ..+++.++|++|++.+++ .|++||+.+.. ... .+.+.+.++.+++.+..++ ..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVE-EG 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccc-cC
Confidence 32 345678999999988775 59999986421 111 1234556666666543321 111 13
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. ++.|||+++|++.. + ...|+
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 206 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDT-I-IDSDR 206 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCE
Confidence 46799999999999999999999999999999999999999999999885 46899999999863 3 23565
No 316
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=5.1e-30 Score=322.53 Aligned_cols=106 Identities=21% Similarity=0.325 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCccc-ccccccCCccccCcccccchhHHHHHHhcCC--ceeeeeCCCcccchHHHHHHHHHHHHHhhhcC
Q 000907 104 ITDYILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPA--HALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180 (1230)
Q Consensus 104 ~vd~il~~lgL~~~-~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p--~ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~ 180 (1230)
+++ .|+.+||.+- .|..++ .|||||||||.||++|..+| ++++|||||+|||+.....+++.|+++.+ .|
T Consensus 469 rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G 541 (943)
T PRK00349 469 RLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LG 541 (943)
T ss_pred HHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CC
Confidence 454 6888999865 676664 59999999999999999987 99999999999999999999999999975 46
Q ss_pred CEEEEEecCCChhHHhhccceEEe------cCCeEEEEcChhhH
Q 000907 181 GTALISLLQPAPEVYNLFDDIILV------SDGQIVYQGPLEHV 218 (1230)
Q Consensus 181 ~t~iiti~qp~~~i~~lfD~I~vL------~~G~vv~~G~~~~l 218 (1230)
.|+|+ +.|...++. .+|+|++| .+|++++.|+.+++
T Consensus 542 ~TVIv-VeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 542 NTLIV-VEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred CEEEE-EeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 66555 555566665 69999999 89999999987754
No 317
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=5e-31 Score=286.56 Aligned_cols=181 Identities=25% Similarity=0.337 Sum_probs=141.4
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCccC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHS 758 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 758 (1230)
+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 4699999999999999999999999999999999998764 37999999986532 12346799999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ-------ALVGLPGVNGLSTEQRKRLTIAVELVANP 831 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~~~~lSgGqrqrl~ia~al~~~p 831 (1230)
..|++||+.+... ... +..+++++.+++.+..+ +..+. .+..||||||||++||++|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999976421 111 12345566666543322 11111 24579999999999999999999
Q ss_pred CEeEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 832 SIIFMDEPTSGLDARAAAVVMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 832 ~illlDEPtsgLD~~~~~~i~~--~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|+|||||+|||+.++..+++ .++.+.++|+|+|+++|++.. + ...|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~ 210 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADW 210 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCE
Confidence 9999999999999999999998 666666668999999999863 3 34554
No 318
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=2.7e-31 Score=331.37 Aligned_cols=195 Identities=26% Similarity=0.339 Sum_probs=160.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. ++.+|+|+|++++|||.++|+|+||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEh
Confidence 6999999998841 23599999999999999999999999999999999998875 479999999886
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
.. ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++..++.+ -.|+.+|..
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~- 468 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGER- 468 (588)
T ss_pred hhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCC-
Confidence 43 467789999999998886 59999998741 1 222 223455566655433 346666653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ .....|+
T Consensus 469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ 538 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADR 538 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCE
Confidence 35699999999999999999999999999999999999999999998874 5899999999985 4567887
No 319
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=2.4e-31 Score=279.46 Aligned_cols=152 Identities=30% Similarity=0.457 Sum_probs=127.8
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCccCCCCC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 762 (1230)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 4699999999999999999999999999999999998765 47999999987532 223345677766
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
+++.+++.+..++. ++.||||||||++|||+|+.+|++++|||||+|
T Consensus 81 ----------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRP-----FNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 45566666544443 346999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+.++..+.+.|++++++ |+|+|+++|++. ++.+..|+
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~ 167 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADR 167 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999998766 899999999987 44566676
No 320
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=4.3e-31 Score=283.90 Aligned_cols=179 Identities=22% Similarity=0.389 Sum_probs=138.2
Q ss_pred eEEeeeEEEEecCcccccccccCC--ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDD--KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
++++|+++.+.. .+ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~~----------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g-- 66 (204)
T cd03250 1 ISVEDASFTWDS----------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG-- 66 (204)
T ss_pred CEEeEEEEecCC----------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC--
Confidence 357788776531 00 13699999999999999999999999999999999998765 479999998
Q ss_pred cChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCC
Q 000907 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-------QALVGLPGVN 811 (1230)
Q Consensus 739 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~ 811 (1230)
.++|++|++.++ ..|++||+.+... .... ...+.++.+++.+.. ++.... ...
T Consensus 67 --------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 126 (204)
T cd03250 67 --------SIAYVSQEPWIQ-NGTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGI 126 (204)
T ss_pred --------EEEEEecCchhc-cCcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCC
Confidence 589999999887 4699999987421 1111 123333343332211 111222 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCC
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR-TVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.||+|||||++|||+|+.+|++++|||||+|||+.+++.+.+ ++++..++|+|||+++|++.
T Consensus 127 ~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~ 189 (204)
T cd03250 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189 (204)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 799999999999999999999999999999999999999988 56666666899999999986
No 321
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.6e-32 Score=295.61 Aligned_cols=197 Identities=24% Similarity=0.363 Sum_probs=162.8
Q ss_pred CCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC
Q 000907 656 FEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS 735 (1230)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 735 (1230)
.....++|+|+++.|+ .++++|+||||++.||+.+|++||||+||||++++|....+. .+|.|.+|
T Consensus 533 ~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI~iD 598 (790)
T KOG0056|consen 533 VTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSITID 598 (790)
T ss_pred ccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceEEEc
Confidence 4556899999999985 357899999999999999999999999999999999986653 47999999
Q ss_pred CeecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHH--HHHHH-HHHcCCCccccccccCCC
Q 000907 736 GYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM--FVEEV-MELVELNPLRQALVGLPG 809 (1230)
Q Consensus 736 g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~~~~~-l~~l~l~~~~~~~~~~~~ 809 (1230)
|+++.. ...|+.+|.||||..++. -|+..|++|+. + ..+.++..+ ++..+ -+.++..+-.++.+|+.+
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG 672 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc
Confidence 998753 567889999999998876 48889998852 1 122222211 11122 234677777889999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
.+ |||||||||+|||+++++|.+++|||.||+||..+.+.|+..|.+++ .++|.|++.|..|.
T Consensus 673 Lk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvAHRLST 735 (790)
T KOG0056|consen 673 LK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLST 735 (790)
T ss_pred cc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEeeeehh
Confidence 64 99999999999999999999999999999999999999999999987 58999999999884
No 322
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.97 E-value=9.5e-30 Score=331.40 Aligned_cols=118 Identities=20% Similarity=0.260 Sum_probs=92.3
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000907 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNGLSTEQRKRLTIAVELV---ANPS 832 (1230)
Q Consensus 757 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~---~~p~ 832 (1230)
.+...||.|+|.+...-........++..+++ +.++.+||.+. .+.. ...||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45567999999886542211111223334455 47888999765 4544 3479999999999999998 6999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 833 IIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 833 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ...|+
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDr 880 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADY 880 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCE
Confidence 99999999999999999999999999888999999999986 34 77777
No 323
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.97 E-value=3.9e-31 Score=330.11 Aligned_cols=197 Identities=25% Similarity=0.359 Sum_probs=162.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++++. .++.+|+|+|+++++||.++|+|+||||||||+++|+|..++. +|+|.+||.+.
T Consensus 330 ~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEeH
Confidence 6999999998842 1246999999999999999999999999999999999988753 79999999875
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
+ ...+++.++|++|++.+++ .|++||+.++. +++.+ ++.++++++.+++.+ -.|+.+|+.+
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g 467 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENG 467 (571)
T ss_pred HhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCC
Confidence 4 3456788999999998875 59999998641 11222 234666777776643 2466676543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++||||++++|+|++||||||+||+.+++.+.+.|++.. +++|+|++||+++ ..+.+|+
T Consensus 468 -~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ 536 (571)
T TIGR02203 468 -VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADR 536 (571)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCE
Confidence 5799999999999999999999999999999999999999999999874 5799999999985 4577787
No 324
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.2e-31 Score=274.41 Aligned_cols=159 Identities=31% Similarity=0.495 Sum_probs=134.3
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+.. .+..+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~ 68 (171)
T cd03228 2 EFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRD 68 (171)
T ss_pred EEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhh
Confidence 56777776531 113699999999999999999999999999999999998765 37999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
..+++.++|++|++.+++ .|+.||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~ 102 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQR 102 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHH
Confidence 234567999999987765 5888776 899999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++. +++|+|+++|++.. +.. .|+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~~-~d~ 163 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLST-IRD-ADR 163 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-HHh-CCE
Confidence 99999999999999999999999999999999999999885 47999999999863 333 554
No 325
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=1e-30 Score=269.33 Aligned_cols=147 Identities=29% Similarity=0.433 Sum_probs=126.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECC
Confidence 35778887763 24699999999999999999999999999999999998765 4799999998754
Q ss_pred h----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. ...++.++|++| ||||
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 2 123456788877 8999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|.|+|+++|++. ++-+..|+
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~ 151 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADR 151 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999777999999999976 34455665
No 326
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-32 Score=317.01 Aligned_cols=169 Identities=20% Similarity=0.415 Sum_probs=142.1
Q ss_pred ceeEEEEECCccCCCCcc---cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~~---~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
-.+|+|++||+|+++.+. |+.+|+|.|||+||.. ||+|||.|+.. +. +
T Consensus 520 PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-~~------------------------t--- 570 (716)
T KOG0058|consen 520 PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-NA------------------------T--- 570 (716)
T ss_pred CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-CC------------------------C---
Confidence 458999999999988763 6899999999998875 99999999864 11 1
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
.++....++.++ .+|+|.+ +++++||.||++|. .||||||||++|||||++||+||+|||+||+||+.+++.|.
T Consensus 571 -~e~i~~AAk~AN-ah~FI~~---~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq 644 (716)
T KOG0058|consen 571 -DEEIEAAAKMAN-AHEFITN---FPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQ 644 (716)
T ss_pred -HHHHHHHHHHhC-hHHHHHh---CccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHH
Confidence 111222333444 4788877 99999999998886 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
++|.++.+ + +||++|+|+.++|.+. |+|+|+++|+|++.|+|+|+.+
T Consensus 645 ~aL~~~~~--~-rTVlvIAHRLSTV~~A-d~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 645 EALDRLMQ--G-RTVLVIAHRLSTVRHA-DQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHhhc--C-CeEEEEehhhhHhhhc-cEEEEEcCCeEEecccHHHHhh
Confidence 99987653 3 5566799998888775 9999999999999999999965
No 327
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=6.4e-31 Score=286.07 Aligned_cols=179 Identities=23% Similarity=0.333 Sum_probs=145.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccC--CCCCHHHHHHHHH
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHS--PYVTVYESLLYSA 771 (1230)
Q Consensus 694 ~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~ 771 (1230)
+++++||+++|+|+||||||||+++|+|..++ .+|+|.+||.+.. ..++.++|++|++.++ ..+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46899999999999999999999999998765 3799999998753 2356799999998664 3479999998753
Q ss_pred HhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHH
Q 000907 772 WLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850 (1230)
Q Consensus 772 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~ 850 (1230)
..... .........+.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223456788999999987766654 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 851 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 851 i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~ 182 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDR 182 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999998877999999999987 46666776
No 328
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.7e-31 Score=258.66 Aligned_cols=184 Identities=24% Similarity=0.336 Sum_probs=159.2
Q ss_pred ccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh--hcccceEEEEccC
Q 000907 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQN 754 (1230)
Q Consensus 677 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~ 754 (1230)
+++....++..++.++||++.+||.+-|.|||||||||||++|+|...+. +|+|.++|.++.. +.+.+.+-|+-..
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~~~~i~~~~~~~~~~l~yLGH~ 83 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQGEPIQNVRESYHQALLYLGHQ 83 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEecCCCCccchhhHHHHHHHhhcc
Confidence 33444556778999999999999999999999999999999999987753 7999999987653 2345677888888
Q ss_pred CccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEe
Q 000907 755 DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 834 (1230)
Q Consensus 755 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~il 834 (1230)
+.+-+.+||.|||.|....... ...+.+.+.++.+||....|..++ .||-||||||+|||-.+..+++.
T Consensus 84 ~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 84 PGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred ccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCce
Confidence 8899999999999997655432 112447889999999999998765 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 835 FMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 835 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
+||||+++||......+-..+...+.+|-.||.+||||.
T Consensus 153 iLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 153 ILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred eecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 999999999999999999999888888999999999986
No 329
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-30 Score=262.94 Aligned_cols=198 Identities=26% Similarity=0.305 Sum_probs=167.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++++. +++.||++||++|++||+.+||||||||||||.++|+|.+....++|+|.++|.++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478889988774 22579999999999999999999999999999999999877656789999999986
Q ss_pred Ch----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCC
Q 000907 740 NQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lS 814 (1230)
.. ++.+.-+...+|.|.-+|..|+.+.|..+.+.+........+..+.+++.++.+++.+ ..++.+. .|+|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 43 3455677889999999999999999998766543221112344566888999999987 5555553 3799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|++++++||..+
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 99999999999999999999999999999999999999999999989999999999764
No 330
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=8.6e-31 Score=332.43 Aligned_cols=197 Identities=28% Similarity=0.385 Sum_probs=161.2
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++. +|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEe
Confidence 46999999998842 2346999999999999999999999999999999999987753 7999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
++. ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+ -.|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 643 467788999999998876 69999997631 1 222 223445555555433 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++. ...+|+
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ 660 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDR 660 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCE
Confidence 35799999999999999999999999999999999999999999999874 68999999999963 355787
No 331
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=1.6e-30 Score=280.17 Aligned_cols=184 Identities=23% Similarity=0.307 Sum_probs=146.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEh
Confidence 5888999887631 123599999999999999999999999999999999998765 379999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
.. ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + +. ....||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHH
Confidence 32 234568999999998776 59999996421 1111 11233333 2 21 24579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++.. +.. .|+
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~~-~d~ 192 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-IID-YDK 192 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hhh-CCE
Confidence 9999999999999999999999999999999999999999985 58999999999874 323 565
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.1e-31 Score=275.92 Aligned_cols=175 Identities=24% Similarity=0.380 Sum_probs=152.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCccCCCCCH
Q 000907 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 691 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+++++.+.--++||-|+||||||||+|+|+|...|. .|.|.+||....+ ..-+|++|||+||-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 567777775799999999999999999999988764 7999999975321 2346889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
+.||.|+.+.- .....+++.+.||+.|+.+++ +..|||||||||+|+|||+++|++|+||||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999985421 233468899999999999887 4479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|-..+.+++-.|.++.++ +.-|+.+||.+. |+..+-|+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~ 198 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADR 198 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhhe
Confidence 999999999999999866 889999999775 78888888
No 333
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=7.7e-31 Score=325.00 Aligned_cols=196 Identities=22% Similarity=0.325 Sum_probs=159.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEH
Confidence 5899999998741 234699999999999999999999999999999999998775 379999999986
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~ 809 (1230)
.. ..+++.++|++|++.+++ .|++||+.++. ...+. +.++++++..++. +-.|+.+|..
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 448 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER- 448 (569)
T ss_pred hhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC-
Confidence 43 456788999999998886 59999997641 11222 2345555555543 3346666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+++|++++|||||++||+.++..+.+.|+++. +|+|+|+++|+++ ....+|+
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~ 518 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASE 518 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCE
Confidence 35699999999999999999999999999999999999999999999874 6899999999985 3355676
No 334
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.97 E-value=7e-31 Score=327.90 Aligned_cols=197 Identities=23% Similarity=0.362 Sum_probs=160.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. +++.+|+|+|++++|||.++|+|+||||||||+|+|+|..++ .+|+|.+||.++
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 68999999988521 124699999999999999999999999999999999998775 379999999886
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
+ ...+++.++|+||++.+++ .|++||+.++. + +.+ ++.++++++..++.+ -.|+.+|+.
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~- 473 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR----P-DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER- 473 (576)
T ss_pred HhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC-
Confidence 4 3456788999999998775 69999997641 1 122 233566666666543 235555553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++||||++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ....+|+
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~ 543 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADR 543 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 35699999999999999999999999999999999999999999999875 5899999999984 3466777
No 335
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.1e-30 Score=318.51 Aligned_cols=190 Identities=19% Similarity=0.230 Sum_probs=155.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccc
Confidence 77888888763 34599999999999999999999999999999999998765 3799999987542
Q ss_pred h---hcccceEEEEccCCcc--C------CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 741 Q---ETFTRISGYCEQNDIH--S------PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~--~------~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
. ...++.++|++|++.. + ..+||+|++.+. ....++++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~---- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF---- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc----
Confidence 2 2234568999998643 1 146888876431 112355788999999988777664
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 134 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~ 204 (490)
T PRK10938 134 -KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQF 204 (490)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCE
Confidence 479999999999999999999999999999999999999999999999877999999999986 45566676
No 336
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.97 E-value=1.2e-30 Score=323.47 Aligned_cols=195 Identities=27% Similarity=0.301 Sum_probs=156.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. ++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEEh
Confidence 5999999998741 23589999999999999999999999999999999998775 479999999876
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~ 809 (1230)
.. ..+++.++||+|++.+++ .|++||+.++. + ..+.++ +++.++..++. +-.|+.+|..
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~- 468 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER- 468 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhccccccchhcCC-
Confidence 43 456788999999998876 69999998741 1 122222 33333333332 2335556554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+||||||||++|||||+++|++|+|||||+|||+.+++.+.+.|+++. +++|+|+++|+++. ...+|+
T Consensus 469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~ 538 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADL 538 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCE
Confidence 35799999999999999999999999999999999999999999998874 58999999999852 355776
No 337
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=2.1e-29 Score=314.57 Aligned_cols=202 Identities=24% Similarity=0.353 Sum_probs=168.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEc
Confidence 47899999887410 1235699999999999999999999999999999999998765 379999999886
Q ss_pred Ch---hc----ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 740 NQ---ET----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~---~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
.. .. .++.++|++|+..+++.+|+.||+.+..... .....+.++++.++++.+|+.+..|+.. ..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 43 11 2467999999999999999999998764322 1233445567889999999988766653 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|+++|++.. .+..|+
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~--~~~~d~ 212 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV--AAQAER 212 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH--HHhCCE
Confidence 99999999999999999999999999999999999999999999987779999999999862 245666
No 338
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=1.5e-30 Score=289.55 Aligned_cols=196 Identities=23% Similarity=0.299 Sum_probs=150.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCEE
Confidence 36899999988741 124699999999999999999999999999999999998764 47999999987
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ-------ALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~ 808 (1230)
+.. ...++.++|++|++.+++ .|++||+.... .... +.+++.++..++.+..+ +..+.
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~- 152 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE- 152 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-
Confidence 642 245678999999998776 59999875321 1111 11233333333332211 11211
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.++++. +++|+|+++|++.. +.. .|+
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~~-~dr 223 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-ILD-ADL 223 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HHh-CCE
Confidence 245799999999999999999999999999999999999999999998874 58999999999874 333 555
No 339
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=4.1e-30 Score=282.34 Aligned_cols=171 Identities=22% Similarity=0.221 Sum_probs=140.7
Q ss_pred EeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCC
Q 000907 688 LLNGVSGAFR-----PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 688 iL~~vs~~i~-----~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 762 (1230)
.++|++++++ +||+++|+||||||||||+++|+|..++ .+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5556666665 7999999999999999999999998765 3799999884 5899999987777899
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
|+|++.+...... . .....+++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999876432110 1 1223577899999987766653 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+.++..+.+.|+++++ .|+|||+++|++. .+....|+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~ 185 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADR 185 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999875 4899999999976 44556676
No 340
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=3.6e-30 Score=317.84 Aligned_cols=193 Identities=20% Similarity=0.258 Sum_probs=155.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++++. ++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 322 ~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEC
Confidence 6999999998841 23599999999999999999999999999999999998775 479999999986
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
.. ..+++.++||+|++.+++ .|++|| . . ...++.+++.++.+++.+..+...|.....+||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHH-Hhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 53 456788999999987765 466665 0 1 12234567888888887543321111112479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+++|++|+||||||+||+.+++.+.+.+.+..+ .|+|+|+++|+++ ....+|+
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~ 518 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADR 518 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCE
Confidence 99999999999999999999999999999999999999876643 5899999999984 4567776
No 341
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=6.8e-29 Score=311.79 Aligned_cols=103 Identities=21% Similarity=0.333 Sum_probs=84.9
Q ss_pred HHHHcCCccc-ccccccCCccccCcccccchhHHHHHHhcCC--ceeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEE
Q 000907 108 ILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPA--HALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTAL 184 (1230)
Q Consensus 108 il~~lgL~~~-~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p--~ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~i 184 (1230)
.|..+||..- .|..+ ..|||||||||.||++|..+| ++++|||||+|||+.+...+++.|+++.+ .|.|+|
T Consensus 470 ~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVI 543 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVI 543 (924)
T ss_pred hHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 3677888653 45444 469999999999999999986 89999999999999999999999999975 466666
Q ss_pred EEecCCChhHHhhccceEEe------cCCeEEEEcChhhH
Q 000907 185 ISLLQPAPEVYNLFDDIILV------SDGQIVYQGPLEHV 218 (1230)
Q Consensus 185 iti~qp~~~i~~lfD~I~vL------~~G~vv~~G~~~~l 218 (1230)
++.|. ...+ ..+|+|++| ++|++++.|+.+++
T Consensus 544 vVeHd-~~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 544 VVEHD-EETI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred EEECC-HHHH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 65544 5555 489999999 89999999887654
No 342
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=276.22 Aligned_cols=182 Identities=27% Similarity=0.391 Sum_probs=151.0
Q ss_pred ceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCch
Q 000907 13 KASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDAD 86 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~ 86 (1230)
-.+|+|.+||.++.... .|+.+|++.|+..|+.+.||.||+.|..++.+. ++
T Consensus 58 PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~----------~k------------ 115 (339)
T COG1135 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV----------PK------------ 115 (339)
T ss_pred CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC----------CH------------
Confidence 45899999998887543 358999999999999999999999998776541 11
Q ss_pred hhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHH
Q 000907 87 IDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 166 (1230)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~ 166 (1230)
++.+++|.++|+.+||++.+|. ...+|||||||||+|||||+.+|+||++|||||+|||.|+.
T Consensus 116 ------------~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 116 ------------AEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred ------------HHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 1234568999999999999985 44679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhhhh
Q 000907 167 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEV 242 (1230)
Q Consensus 167 ~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~~~ 242 (1230)
.|++.|+++.+..|-|+ +.|+|-+.-+...|||++||++|+++++|+..++ |..|.+.-.-+|+.+.
T Consensus 179 sIL~LL~~In~~lglTI-vlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~ 245 (339)
T COG1135 179 SILELLKDINRELGLTI-VLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV--------FANPKHAITQEFIGET 245 (339)
T ss_pred HHHHHHHHHHHHcCCEE-EEEechHHHHHHHhhhheEeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhh
Confidence 99999999998776554 5566778899999999999999999999999987 2345544444454443
No 343
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=6.8e-30 Score=292.58 Aligned_cols=168 Identities=28% Similarity=0.380 Sum_probs=143.5
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHH
Q 000907 704 LMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSK 782 (1230)
Q Consensus 704 i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 782 (1230)
|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+||+.|....+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 6899999999999999998765 47999999988643 223567999999999999999999999875432 12334
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 000907 783 TREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT- 861 (1230)
Q Consensus 783 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~- 861 (1230)
+.+++++++++.+++.+..++.. +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 44567889999999988777653 579999999999999999999999999999999999999999999998754
Q ss_pred CCEEEEEecCCCHHHHHHHhc
Q 000907 862 GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 862 g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+|+|++||++. ++..+.|+
T Consensus 151 g~tiiivTHd~~-e~~~~~d~ 170 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDR 170 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCE
Confidence 899999999986 66777887
No 344
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=3.2e-28 Score=311.74 Aligned_cols=184 Identities=29% Similarity=0.445 Sum_probs=163.9
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCCccCCCCCH
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+++++|+.+++||+.|++|+|||||||++|+|+|..++ .+|++.++|.++.. .+.++.+|||||+|.+++.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~--t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP--TSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC--CcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 99999999999999999999999999999999998775 47999999988643 2367789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
+|++.+.+++|. ....+.++.++.+++.++|.+.+++.++ .+|||+|||+++|.||+.+|++++|||||+|+
T Consensus 658 rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 999999999885 3444555669999999999999998854 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||.+++.++++++++.++|+.+|+|||--. |.-.+.||
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR 767 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTR 767 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhh
Confidence 999999999999999888889999999543 44556787
No 345
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.2e-30 Score=252.77 Aligned_cols=192 Identities=24% Similarity=0.338 Sum_probs=160.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECC-ee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG-YP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 738 (1230)
.++.+|++.++ ++..+|+|+||++.|||+-+|+|||||||||+|++|+|...+ ..|++.++| .+
T Consensus 5 iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCchh
Confidence 46777777765 567899999999999999999999999999999999997664 379999999 45
Q ss_pred cCh----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 739 KNQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS------SEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 739 ~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
+.. ...+..+|-=+|.+..|..+||+|||+.+.....+ ... ..+.+++++++++..||.+.++...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~-~~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL-RAEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhc-ChhHHHHHHHHHHHcccchhhhhhhh--
Confidence 432 22345678889999999999999999987432110 111 12344679999999999999887755
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.||.||||++.|++-++.+|++|+||||++|+-.+...+.-++|+.++ .+++|+++.||-.
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la-~~hsilVVEHDM~ 207 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHDMG 207 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh-cCceEEEEeccHH
Confidence 599999999999999999999999999999999999999999999997 4789999999864
No 346
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.7e-30 Score=259.49 Aligned_cols=180 Identities=23% Similarity=0.325 Sum_probs=145.8
Q ss_pred ceeEEEEECCccCCCC----cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhh
Q 000907 13 KASGKVTYNGHDMHEF----VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADID 88 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 88 (1230)
-.+|+|.++|.++... ..|+.+|+|.|+-.|||.+||.||+..+-.. +...+
T Consensus 54 ~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~---------v~~~~--------------- 109 (240)
T COG1126 54 PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK---------VKKLS--------------- 109 (240)
T ss_pred CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH---------HcCCC---------------
Confidence 4589999999876432 2478999999999999999999999987431 11111
Q ss_pred HHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHH
Q 000907 89 VFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 168 (1230)
Q Consensus 89 ~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I 168 (1230)
.+++++....+|+.+||.+.+|. +...|||||||||+|||||+-+|+++++|||||+|||....+|
T Consensus 110 ---------k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EV 175 (240)
T COG1126 110 ---------KAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175 (240)
T ss_pred ---------HHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHH
Confidence 12234456779999999999995 4457999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 169 VNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 169 ~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
.+.++++|+ .|.|-+ .++|-+.-+.+.+|||+.|++|++++.|++++. |..|.+.-..+|+.
T Consensus 176 L~vm~~LA~-eGmTMi-vVTHEM~FAr~VadrviFmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~ 237 (240)
T COG1126 176 LDVMKDLAE-EGMTMI-IVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLS 237 (240)
T ss_pred HHHHHHHHH-cCCeEE-EEechhHHHHHhhheEEEeeCCEEEEecCHHHH--------hcCCCCHHHHHHHH
Confidence 999999997 455544 466778999999999999999999999998876 33555544455554
No 347
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.96 E-value=3.7e-29 Score=279.29 Aligned_cols=184 Identities=21% Similarity=0.307 Sum_probs=141.6
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECC
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 736 (1230)
.+..++++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 36 ~~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i~g 98 (282)
T cd03291 36 DDNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKHSG 98 (282)
T ss_pred CCCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC
Confidence 3446899999873 13599999999999999999999999999999999998765 379999988
Q ss_pred eecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCC
Q 000907 737 YPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-------QALVGLPG 809 (1230)
Q Consensus 737 ~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~ 809 (1230)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+.. ++.++. .
T Consensus 99 ----------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~ 156 (282)
T cd03291 99 ----------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-G 156 (282)
T ss_pred ----------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-C
Confidence 38999999887774 999999864210 11 1122334444443221 122221 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||+++|++.. + ...|+
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~ 227 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADK 227 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCE
Confidence 3579999999999999999999999999999999999999999865 5554 57999999999874 3 45565
No 348
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.96 E-value=2e-29 Score=311.18 Aligned_cols=199 Identities=17% Similarity=0.219 Sum_probs=158.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++++... ..++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p--~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP--QEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 4699999999985210 0123699999999999999999999999999999999998775 47999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-ccCCCCCCCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL-VGLPGVNGLS 814 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~lS 814 (1230)
+.. ..+++.++||+|++.++. .|+++|.. + ...++.++++++.+++.+..+.. -|......||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 653 456788999999988775 47777731 1 12234577889999887654432 2222235799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~-~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+++|++|+|||||++||+.+++.+.+.+. .+..+|+|+|+++|+++ ..+..|+
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~ 539 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQ 539 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCE
Confidence 999999999999999999999999999999999999998664 45557899999999985 4567776
No 349
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.1e-29 Score=285.03 Aligned_cols=181 Identities=29% Similarity=0.410 Sum_probs=152.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.+.+ .+|+|.++|.+.... ..++.+|||+|++.+++.+||+|||.|.+.+++...
T Consensus 48 lk~l~gl~~p---~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~-------------- 110 (293)
T COG1131 48 LKILAGLLKP---TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK-------------- 110 (293)
T ss_pred HHHHhCCcCC---CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh--------------
Confidence 4778888764 689999999998753 346789999999999999999999999999875321
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
...++.++++++.+||.+.++..+ +++|||||||++||.||+++|+++||||||+
T Consensus 111 --------------------~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~ 165 (293)
T COG1131 111 --------------------EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTS 165 (293)
T ss_pred --------------------hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 011235789999999999666555 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHh
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFIS 224 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~ 224 (1230)
|||+.++.++++.|+++++..+.|+++ .+|...++..+||+|++|++|++++.|+.+++...+..
T Consensus 166 GLDp~~~~~~~~~l~~l~~~g~~tvli-ssH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 166 GLDPESRREIWELLRELAKEGGVTILL-STHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEE-eCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 999999999999999999753345555 55667899999999999999999999999998776543
No 350
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.96 E-value=1.3e-29 Score=337.64 Aligned_cols=207 Identities=21% Similarity=0.356 Sum_probs=163.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC-Cee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS-GYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~ 738 (1230)
.++++|+++.|+.. .++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP--TEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC--CCCeEEEeCCcc
Confidence 69999999988521 124699999999999999999999999999999999998775 47999994 566
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHh-cC--------CC-----------------------------
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWL-RL--------SS----------------------------- 777 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~~--------~~----------------------------- 777 (1230)
+. ...+++.+|||+|++.+++ .|++||+.++... +. ..
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 43 3456788999999999987 5999999986310 00 00
Q ss_pred -CC---------CHHHHHHHHHHHHHHcCCCcc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCC
Q 000907 778 -EV---------NSKTREMFVEEVMELVELNPL-------RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840 (1230)
Q Consensus 778 -~~---------~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 840 (1230)
.. .....++.+.++++.+++.+. .||.+|.. ...||||||||++|||||+++|+||+|||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 00 001123456677777766543 35666654 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 841 SGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 841 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+||+.++..+.+.|+++.+ +|+|+|+++|+++. + ...|+
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~ 648 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANT 648 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCE
Confidence 99999999999999999875 58999999999973 3 67887
No 351
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.5e-29 Score=306.12 Aligned_cols=190 Identities=23% Similarity=0.312 Sum_probs=152.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++. ++.+|+|+||+|++||+++|+||||||||||||+|+|..++ .+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC---
Confidence 56788888762 34699999999999999999999999999999999998765 3799999873
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHH-h----------c-CCCC-C----------------CHHHHHHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAW-L----------R-LSSE-V----------------NSKTREMFVEEV 791 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~----------~-~~~~-~----------------~~~~~~~~~~~~ 791 (1230)
+.+||++|++.+++.+||+|++.++.. . . .+.. . ...+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 358999999988999999999986421 0 0 0000 0 001123567889
Q ss_pred HHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000907 792 MELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870 (1230)
Q Consensus 792 l~~l~l~~~~-~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 870 (1230)
++.+|+.+.. +.. +..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|
T Consensus 139 l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 233 347999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHHHhc
Q 000907 871 QPSIDIFEAFDA 882 (1230)
Q Consensus 871 ~~~~~i~~~fd~ 882 (1230)
++. .+.+..|+
T Consensus 211 d~~-~~~~~~d~ 221 (530)
T PRK15064 211 DRH-FLNSVCTH 221 (530)
T ss_pred CHH-HHHhhcce
Confidence 987 45566777
No 352
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.1e-28 Score=304.37 Aligned_cols=191 Identities=25% Similarity=0.334 Sum_probs=152.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+. +++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--
Confidence 488899988763 135699999999999999999999999999999999998765 3799998752
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHH-hc------------CCCCCCH--------------------HHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAW-LR------------LSSEVNS--------------------KTREM 786 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~~------------~~~~~~~--------------------~~~~~ 786 (1230)
..+|||+|++.+++.+||.||+.+... .+ ....... .+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 468999999999999999999987521 00 0000000 01134
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000907 787 FVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 866 (1230)
Q Consensus 787 ~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi 866 (1230)
+++++++.+|+.. .+.. +..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 5778899999853 4544 3479999999999999999999999999999999999999999999876 25999
Q ss_pred EEecCCCHHHHHHHhc
Q 000907 867 CTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 867 ~~~H~~~~~i~~~fd~ 882 (1230)
++||++. .+-+..|+
T Consensus 215 iisHd~~-~~~~~~d~ 229 (556)
T PRK11819 215 AVTHDRY-FLDNVAGW 229 (556)
T ss_pred EEeCCHH-HHHhhcCe
Confidence 9999986 44456676
No 353
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=4.8e-29 Score=274.85 Aligned_cols=178 Identities=22% Similarity=0.247 Sum_probs=145.3
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEE-----------ECCeecChh--c-c--cceEEE
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT-----------ISGYPKNQE--T-F--TRISGY 750 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~--~~~~~~ 750 (1230)
.+|+|+| .+++||+++|+|||||||||||++|+|..++ .+|+|. ++|.+.... . . ...++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p--~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP--NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5899999 5999999999999999999999999998775 379995 778765321 1 1 124689
Q ss_pred EccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000907 751 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVAN 830 (1230)
Q Consensus 751 v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~ 830 (1230)
++|....++. ++.+++.+.. + ....++.++++++.+++.+..+.. +..||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~~-~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIPK-AVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRN-----IDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCch-HHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHhC
Confidence 9998877774 7888876632 1 122345578899999998766654 347999999999999999999
Q ss_pred CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 831 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 831 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~ 208 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDY 208 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999877999999999986 45556776
No 354
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.96 E-value=1.1e-28 Score=265.83 Aligned_cols=171 Identities=19% Similarity=0.175 Sum_probs=134.5
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEE-ECCeecChhcccceEEEEccCCccCCCCCHHH
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT-ISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
++|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|. ++|... .+.++..+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCcCcHHH
Confidence 379999999999999999999999999999999998765 379986 776432 1234566788999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCH
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~ 845 (1230)
|+.+...... ....+. .+.+.+.+++....++.+ +.||+|||||++||+||+.+|++++|||||+++|+
T Consensus 69 nl~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9988654331 222221 233445667776666654 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 846 RAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 846 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.++..+.+.+.+..+ ++|+|+++|++. .+....|+
T Consensus 138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~ 172 (213)
T PRK15177 138 ATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHA 172 (213)
T ss_pred HHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCe
Confidence 999999998865433 478999999987 45556665
No 355
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.96 E-value=6.8e-29 Score=310.20 Aligned_cols=193 Identities=19% Similarity=0.262 Sum_probs=152.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++
T Consensus 451 ~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~--- 513 (659)
T TIGR00954 451 GIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA--- 513 (659)
T ss_pred eEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC---
Confidence 588999998663 124699999999999999999999999999999999998764 368888764
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC----CCCCCCCH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL----PGVNGLST 815 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~lSg 815 (1230)
++.++||+|++.+++. |++||+.++........ ....++.++++++.+++.+..++..|. .....|||
T Consensus 514 -----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSg 585 (659)
T TIGR00954 514 -----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSG 585 (659)
T ss_pred -----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCH
Confidence 3578999999988876 99999987532110000 001134467889999987765443221 11357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+++|++++|||||+|||+.+++.+.+.+++ .|+|+|+++|+++. .+..|+
T Consensus 586 GqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~ 647 (659)
T TIGR00954 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEY 647 (659)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCE
Confidence 999999999999999999999999999999999999998875 38999999999873 355665
No 356
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=2.2e-28 Score=246.14 Aligned_cols=135 Identities=27% Similarity=0.423 Sum_probs=118.0
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. +..+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~---- 62 (144)
T cd03221 2 ELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST---- 62 (144)
T ss_pred EEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe----
Confidence 4667776552 23699999999999999999999999999999999998765 4799999984
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
+.++|++| ||+|||||+
T Consensus 63 ----~~i~~~~~-----------------------------------------------------------lS~G~~~rv 79 (144)
T cd03221 63 ----VKIGYFEQ-----------------------------------------------------------LSGGEKMRL 79 (144)
T ss_pred ----EEEEEEcc-----------------------------------------------------------CCHHHHHHH
Confidence 46899988 899999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||||+.+|++++|||||+|||+.++..+.+.++++ ++|+++++|++. ++.+..|+
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~ 136 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATK 136 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999876 479999999986 44444565
No 357
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=5.5e-29 Score=255.48 Aligned_cols=168 Identities=24% Similarity=0.340 Sum_probs=146.9
Q ss_pred ceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|+|++||.++.+.. .|+.+|||-|+--|||++||.|||.+--++++..+
T Consensus 53 pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k------------------------- 107 (309)
T COG1125 53 PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK------------------------- 107 (309)
T ss_pred CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH-------------------------
Confidence 45899999999998754 47999999999999999999999999877765211
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcc--cccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDV--CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 167 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~--~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~ 167 (1230)
++++++++++|+.+||+. .+| +....|||||+|||-+||||+.+|+|+++|||.++||+.++.+
T Consensus 108 ---------~~i~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~ 173 (309)
T COG1125 108 ---------ERIKKRADELLDLVGLDPSEYAD-----RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQ 173 (309)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHhh-----cCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHH
Confidence 123346899999999975 333 6778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 168 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 168 I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+++-++++.+..++|+| .++|..+|.+.++|||++|++|+++.+|+++++..
T Consensus 174 lQ~e~~~lq~~l~kTiv-fVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 174 LQEEIKELQKELGKTIV-FVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHHHHHHHhCCEEE-EEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999988777655 57789999999999999999999999999999864
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1.9e-28 Score=252.93 Aligned_cols=148 Identities=22% Similarity=0.331 Sum_probs=121.4
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHH
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY 764 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~ 764 (1230)
.+.+|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4579999999999999999999999999999999964 2588888876321 12334677776
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CCEeEEeCCCC
Q 000907 765 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 841 (1230)
Q Consensus 765 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~~~--p~illlDEPts 841 (1230)
.+.++.+++... .+.. .+.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 235667777642 3443 457999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 842 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+.++..+.+.|+++++.|+|||+++|++.. + +..|+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~ 157 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADW 157 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCE
Confidence 999999999999999987779999999999863 3 55666
No 359
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=1.5e-28 Score=253.83 Aligned_cols=130 Identities=27% Similarity=0.363 Sum_probs=113.9
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCH
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+++.+++++ +++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+ ++|++|+..
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~---------i~~~~q~~~------- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGIT---------PVYKPQYID------- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCEE---------EEEEcccCC-------
Confidence 456789985 89999999999999999999999999998765 37999999853 678887431
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
||||||||++|||+|+.+|++++|||||+||
T Consensus 72 -------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 72 -------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+.++..+.+.++++++++ +|+|+++|++. .+.+..|+
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 141 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDR 141 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999987664 99999999985 34455676
No 360
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=2.3e-28 Score=301.51 Aligned_cols=191 Identities=25% Similarity=0.341 Sum_probs=150.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|++++++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+++
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~--- 66 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP--- 66 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC---
Confidence 478889988763 134699999999999999999999999999999999998765 379999875
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHh-cC-----------CCCCCHH---------------------HHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWL-RL-----------SSEVNSK---------------------TREM 786 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~~ 786 (1230)
...+||++|++.+++.+||.||+.++... +. ......+ ....
T Consensus 67 -----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 67 -----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred -----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 24689999999999999999999875311 00 0000010 0113
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000907 787 FVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 866 (1230)
Q Consensus 787 ~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi 866 (1230)
+++++++.+++.. .+.. ++.||||||||++||++|+.+|++|||||||++||+.++..+.+.|++. +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777743 3443 3579999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHHHhc
Q 000907 867 CTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 867 ~~~H~~~~~i~~~fd~ 882 (1230)
++||++. .+-...|+
T Consensus 213 iisHd~~-~~~~~~d~ 227 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGW 227 (552)
T ss_pred EEeCCHH-HHHhhcCe
Confidence 9999986 44455676
No 361
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=6.9e-28 Score=271.10 Aligned_cols=177 Identities=18% Similarity=0.231 Sum_probs=133.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++|+++.++. +..++++++|-+.+++.+|++||||||||||||++.|...| ..|.|.-.-+.
T Consensus 389 vi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-
Confidence 5788899887742 22699999999999999999999999999999999998765 35766433221
Q ss_pred ChhcccceEEEEccC--CccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQN--DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.+++..|. +.+.-..++-|++.-.. ....+.+.+..++..+||....+.. ..++||+||
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gq 514 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQ 514 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhccccc
Confidence 22333332 23333456666654221 1123345678899999998554433 246899999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
|+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. .-+||+++||-.
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr 567 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR 567 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh
Confidence 99999999999999999999999999999999999988764 358999999843
No 362
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=9.1e-29 Score=247.60 Aligned_cols=183 Identities=25% Similarity=0.345 Sum_probs=146.5
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChh---cccceEEEEccCC--ccC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE---TFTRISGYCEQND--IHS 758 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~--~~~ 758 (1230)
.++.+|+++|++|..|+++.|+|.||||||||+|+|+|...+ .+|+|.++|.+++.. .+...++-|+||+ ...
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~--t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP--TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc--CCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 456899999999999999999999999999999999998775 479999999987643 2334567789997 468
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNS---KTREMFVEEVMEL--VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 833 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~--l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~i 833 (1230)
+.+|+.||+..+..-........ ..+.+...+-++. +|+++..++.+|. |||||||-+++++|.++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcE
Confidence 99999999988653211111211 2233333444444 4567777777763 999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCC
Q 000907 834 IFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPS 873 (1230)
Q Consensus 834 lllDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~ 873 (1230)
|||||-|++|||.++..|++.=.+..+ .+.|.+++||.-.
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH
Confidence 999999999999999999999888764 4789999999765
No 363
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=4.6e-28 Score=256.49 Aligned_cols=174 Identities=26% Similarity=0.340 Sum_probs=141.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++.+|++..++.... ... .....+++||||++++||+++|+|.||||||||-|+|.|+.++ .+|+|.++|.++
T Consensus 4 ll~v~~l~k~f~~~~~---~~~-~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~i 77 (268)
T COG4608 4 LLEVKNLKKYFPVGKG---FGK-KRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKDI 77 (268)
T ss_pred eEEEeccEEEEecccc---cCc-ccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcch
Confidence 4788899888865321 111 1135799999999999999999999999999999999998775 489999999874
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqr 818 (1230)
.... .++..+++.++++.+|+.. ..++. +++||||||
T Consensus 78 ~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSGGQr 115 (268)
T COG4608 78 TKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQR 115 (268)
T ss_pred hhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCchhh
Confidence 3211 3345567899999999764 23332 568999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+.|||||+.+|+++++|||||.||...+.+++++|+++.++ |.|.++++||.+ .+...-|+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdr 179 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDR 179 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhccc
Confidence 9999999999999999999999999999999999999999754 999999999987 34445565
No 364
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6e-29 Score=281.10 Aligned_cols=169 Identities=22% Similarity=0.390 Sum_probs=137.0
Q ss_pred ceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|+|++||.++++.. .|+.+|||||+.+||. -||.+||.|+..-. -++.+.+.|++-
T Consensus 403 d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~sa----s~eeV~e~~k~a------------- 464 (591)
T KOG0057|consen 403 DYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNPSA----SDEEVVEACKRA------------- 464 (591)
T ss_pred ccCCcEEECCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCCCc----CHHHHHHHHHHc-------------
Confidence 46899999999997654 4789999999877665 59999999986421 123333333321
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
..+|.+.+ |+++++|.||++|.+ ||||||||||+|||++++|+|++||||||.||+.|+.+++
T Consensus 465 -------------~~hd~i~~---l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~ 527 (591)
T KOG0057|consen 465 -------------GLHDVISR---LPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREIL 527 (591)
T ss_pred -------------CcHHHHHh---ccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHH
Confidence 13566655 999999999988765 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+.+++. ..++|+|+ |.|.. +....||+|++|++|++.+.|+|+++..
T Consensus 528 ~~i~~~--~~~rTvI~-IvH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 528 DMIMDV--MSGRTVIM-IVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHh--cCCCeEEE-EEecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999873 34666666 54554 4556679999999999999999999976
No 365
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-29 Score=272.78 Aligned_cols=195 Identities=25% Similarity=0.398 Sum_probs=159.4
Q ss_pred CCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC
Q 000907 656 FEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS 735 (1230)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 735 (1230)
..+..+.|+++++.+. +++++|+|+|+.+++|+.+|++||||+||||++++|...... .+|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~--~sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV--NSGSITID 323 (497)
T ss_pred cccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC--cCceEEEc
Confidence 3455799999999885 356899999999999999999999999999999999987764 47999999
Q ss_pred CeecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccC
Q 000907 736 GYPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMF-----VEEVMELVELNPLRQALVGL 807 (1230)
Q Consensus 736 g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~ 807 (1230)
|+++. ....++.+|.||||..++. -|...|+.|+. ...+.++..+. ..+.++ .+.+-.++.+|.
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge 395 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE 395 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch
Confidence 99864 3567889999999998875 48888888752 12233322211 112222 245566888887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
.+. .|||||||||+|||+++++|+||+|||.||+||..+.+.++..|++.+ .|+|.+++.|..|.
T Consensus 396 rgl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst 460 (497)
T COG5265 396 RGL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST 460 (497)
T ss_pred hee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh
Confidence 655 399999999999999999999999999999999999999999999886 69999999999883
No 366
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.3e-28 Score=255.20 Aligned_cols=186 Identities=25% Similarity=0.331 Sum_probs=153.9
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC--hhcccceEEEEc-cCCccCCCCC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN--QETFTRISGYCE-QNDIHSPYVT 762 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~~~~~~~~~~v~-q~~~~~~~lt 762 (1230)
..+++|+||+|++|++++++|||||||||+||+|+|...| .+|.|.++|...- .+.+-+.+++|+ |-..+.-.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p--~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP--TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc--CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 3589999999999999999999999999999999998775 4799999998642 234445666665 4445555566
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
+.|.+.....+. +.+.++-.++.+.+.+.|++++..+.. ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 777776543332 455566677889999999998877765 467999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||..++..+.+.|++..+ .+.||+.+||+-+ +|-.+.|+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~r 226 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDR 226 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhh
Confidence 999999999999999864 5999999999987 67778887
No 367
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.95 E-value=9.5e-28 Score=260.16 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=169.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
-++.+|++..+... .+...++++|||++++||.+||+|.||||||-..+.+.|+.+.. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 47888998877532 35678999999999999999999999999999999999876532 3469999999
Q ss_pred eecC---hhcc----cceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 000907 737 YPKN---QETF----TRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 807 (1230)
Q Consensus 737 ~~~~---~~~~----~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 807 (1230)
.+.- +... -..+++++|++. +.|..|+...+.-... .....+.+..++++.++++..|+.+....+-..
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~--~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR--LHRGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 8742 2222 247899999984 6677788777755443 334567777788899999999998876665444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++|||||||||.||+||+.+|++|+.||||++||...+.+|+++|+++.++ |..++++|||.+. +-..-|+
T Consensus 155 --PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADr 227 (534)
T COG4172 155 --PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADR 227 (534)
T ss_pred --CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhh
Confidence 5689999999999999999999999999999999999999999999999754 9999999999872 3344465
No 368
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.3e-28 Score=271.44 Aligned_cols=176 Identities=26% Similarity=0.383 Sum_probs=152.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|||... ..+|+|.++|.++++... +|.+|+|.|+..|+|++||+|||.|+.++++.. +
T Consensus 46 Lr~IAGLe~---~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~----------k----- 107 (338)
T COG3839 46 LRMIAGLEE---PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP----------K----- 107 (338)
T ss_pred HHHHhCCCC---CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCc----------h-----
Confidence 678899865 458999999999998654 589999999999999999999999998876421 1
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
++.+++|+++.+.|+|+|-.|.+. ++|||||||||++||||+++|++++||||+|.
T Consensus 108 -------------------~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSn 163 (338)
T COG3839 108 -------------------AEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSN 163 (338)
T ss_pred -------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEEecCchhH
Confidence 122346888999999999999654 57999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+..+.++...++++.+..+.|+| -++|...|+..++|||++|++|++...|++.++-
T Consensus 164 LDa~lR~~mr~ei~~lh~~l~~T~I-YVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 164 LDAKLRVLMRSEIKKLHERLGTTTI-YVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEE-EEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 9999999999999998876655544 5678889999999999999999999999999983
No 369
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=2e-28 Score=300.42 Aligned_cols=178 Identities=26% Similarity=0.369 Sum_probs=140.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|... ..+|+|++||.|+++.. .|+.+|||+||+.+|. .||+|||.++..-
T Consensus 517 KLL~gly~---p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p~------------------- 573 (709)
T COG2274 517 KLLLGLYK---PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNPE------------------- 573 (709)
T ss_pred HHHhcCCC---CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCCC-------------------
Confidence 55666654 45899999999998765 4799999999888665 6999999986531
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+.++.+++.. ....+|+|.+ ||.++||.||+.| .+||||||||++|||||+++|+||+||||||
T Consensus 574 ------~~~e~i~~A~~-----~ag~~~fI~~---lP~gy~t~v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTS 638 (709)
T COG2274 574 ------ATDEEIIEAAQ-----LAGAHEFIEN---LPMGYDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATS 638 (709)
T ss_pred ------CCHHHHHHHHH-----HhCcHHHHHh---cccccccccccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 11111122211 1124667666 9999999999766 4799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQF 221 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~ 221 (1230)
+||+.|+..|.+.|+++.. ++|+|+..|+ . .....+|+|+||++|+++++|||+++.+.
T Consensus 639 aLD~~sE~~I~~~L~~~~~--~~T~I~IaHR-l-~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 639 ALDPETEAIILQNLLQILQ--GRTVIIIAHR-L-STIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred ccCHhHHHHHHHHHHHHhc--CCeEEEEEcc-c-hHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999998763 5776665444 3 45566799999999999999999999763
No 370
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.8e-28 Score=241.67 Aligned_cols=176 Identities=27% Similarity=0.349 Sum_probs=149.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCC--CcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHE--FVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~--~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|++|++.+. -.+|+|++||.+... ...++.+|..+.+..++..||+||||.|.+++.+.. +
T Consensus 45 LRmiatlL~---P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~----------~---- 107 (245)
T COG4555 45 LRMIATLLI---PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS----------R---- 107 (245)
T ss_pred HHHHHHhcc---CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh----------h----
Confidence 355666554 358999999999753 345789999998889999999999999999876421 1
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+.+++++.+.+.|+|.+|.|+.+| ++|-|+||||+|||||+.+|+|++||||||
T Consensus 108 --------------------~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 108 --------------------KEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred --------------------hHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 1234568889999999999999998 499999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||-.+...+.+.++++.. .|+.++. -.|-++|+..+||++++|++|++++.|+.+++..
T Consensus 163 GLDi~~~r~~~dfi~q~k~-egr~viF-SSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 163 GLDIRTRRKFHDFIKQLKN-EGRAVIF-SSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CccHHHHHHHHHHHHHhhc-CCcEEEE-ecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999998764 4565555 4577999999999999999999999999988754
No 371
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.2e-28 Score=255.10 Aligned_cols=177 Identities=24% Similarity=0.389 Sum_probs=149.1
Q ss_pred CccccCCcCCCCceeEEEEECCc---cCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGH---DMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~---~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|||... -.+|.|.+||. |.+.... .|.+|||.|+-.+|+.|||.|||.|+.+++. . ++.
T Consensus 45 LRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~--~---~p~------ 110 (345)
T COG1118 45 LRIIAGLET---PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK--E---RPS------ 110 (345)
T ss_pred HHHHhCcCC---CCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc--c---CCC------
Confidence 578888865 45799999999 5554222 3899999999999999999999999987651 1 111
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
..+.+..++++|+.+.|++.++ ....+|||||||||++||||+..|++|+||||
T Consensus 111 ---------------------~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 111 ---------------------EAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred ---------------------hhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 1122345788999999988776 66788999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
.++||++.+.++-+.|+++.+..|.|++. ++|...|+++++|||++|++|+|...||++++
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvf-VTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEE-EeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 99999999999999999988766666655 67888999999999999999999999999998
No 372
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.4e-27 Score=242.41 Aligned_cols=135 Identities=37% Similarity=0.587 Sum_probs=118.0
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCccCCCCC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 762 (1230)
+.+++++|+++++||+++|+|+||||||||+++|+|..++ ..|+|.++|.+... ...++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 4699999999999999999999999999999999998765 47999999986542 234567888887
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
||+|||||++||++++.+|++++|||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||..++..+.+.++++.++++|+++++|++.. +-...|+
T Consensus 111 lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~ 149 (157)
T cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADR 149 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCE
Confidence 99999999999999987668999999999763 3333454
No 373
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=9e-28 Score=246.16 Aligned_cols=178 Identities=22% Similarity=0.344 Sum_probs=145.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||.+.|.+.+ .+|+|.++|+++.... .++.+|++.|+-.||.+|||.||+.|-.+-. .+.++
T Consensus 51 Lr~I~Gll~P---~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~---------~~lp~ 118 (263)
T COG1127 51 LRLILGLLRP---DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH---------TKLPE 118 (263)
T ss_pred HHHHhccCCC---CCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh---------ccCCH
Confidence 4667777763 4899999999986432 3578999999999999999999999843311 11111
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCccc-ccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~-~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
. ..++.+..-|+..||+.. +| .+...||||+|||+++||||+.+|+|+|+
T Consensus 119 ~------------------------~i~~lv~~KL~~VGL~~~~~~-----~~PsELSGGM~KRvaLARAialdPell~~ 169 (263)
T COG1127 119 S------------------------LIRELVLMKLELVGLRGAAAD-----LYPSELSGGMRKRVALARAIALDPELLFL 169 (263)
T ss_pred H------------------------HHHHHHHHHHHhcCCChhhhh-----hCchhhcchHHHHHHHHHHHhcCCCEEEe
Confidence 1 122356667889999765 44 56678999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||||||+.++..+-+.++++.+..+-|++ .++|..++++..+|++++|.+|+|+.+||++++.+
T Consensus 170 DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i-~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 170 DEPTSGLDPISAGVIDELIRELNDALGLTVI-MVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred cCCCCCCCcchHHHHHHHHHHHHHhhCCEEE-EEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999987766555 57788999999999999999999999999999854
No 374
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=1.6e-27 Score=291.96 Aligned_cols=180 Identities=25% Similarity=0.250 Sum_probs=144.6
Q ss_pred ccCCc-eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEE-----------ECCeecChh-----c
Q 000907 681 VHDDK-LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT-----------ISGYPKNQE-----T 743 (1230)
Q Consensus 681 ~~~~~-~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~ 743 (1230)
.+++. ..+|++++ .+++||++||+||||||||||||+|+|..++. .|+|. ++|.++... .
T Consensus 81 ~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~ 157 (590)
T PRK13409 81 HRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157 (590)
T ss_pred EEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhc
Confidence 34444 36999999 99999999999999999999999999987653 69997 888765321 1
Q ss_pred ccceEEEEccCCccCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 744 FTRISGYCEQNDIHSPY---VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 744 ~~~~~~~v~q~~~~~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
.+..+++.+|.....|. .||+|++... ...+.++++++.+++.+..|+.+ ..||||||||
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qr 220 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQR 220 (590)
T ss_pred cCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 12235666664433332 3999988631 12345789999999988777765 4699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||++|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+....|+
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~ 280 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADN 280 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999987 999999999987 45566676
No 375
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.7e-27 Score=291.93 Aligned_cols=189 Identities=20% Similarity=0.261 Sum_probs=142.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++ +++.+|+||||+|++||++||+||||||||||||+|+|..++ .+|+|.++|..
T Consensus 2 i~i~nls~~~-------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p--d~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRR-------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA--DGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEe-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCCC--
Confidence 5678888776 345799999999999999999999999999999999998665 37999998742
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHH--------H---------------hcC-CCCCCHHHHHHHHHHHHHHcC
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSA--------W---------------LRL-SSEVNSKTREMFVEEVMELVE 796 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~--------~---------------~~~-~~~~~~~~~~~~~~~~l~~l~ 796 (1230)
.++|++|+.... ..|+.+.+.-.. . +.. .........+.+++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 378888864332 245544432110 0 000 000000122356788999999
Q ss_pred CC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Q 000907 797 LN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSID 875 (1230)
Q Consensus 797 l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~ 875 (1230)
+. +..+..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||++|||+. .
T Consensus 138 l~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 4556554 469999999999999999999999999999999999999999998765 569999999976 3
Q ss_pred HHHHHhc
Q 000907 876 IFEAFDA 882 (1230)
Q Consensus 876 i~~~fd~ 882 (1230)
+-...|+
T Consensus 209 l~~~~d~ 215 (638)
T PRK10636 209 LDPIVDK 215 (638)
T ss_pred HHHhcCE
Confidence 4445565
No 376
>PLN03232 ABC transporter C family member; Provisional
Probab=99.95 E-value=2.9e-27 Score=318.83 Aligned_cols=187 Identities=23% Similarity=0.333 Sum_probs=150.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|.|..++ .+|++.
T Consensus 614 ~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~------ 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV------ 675 (1495)
T ss_pred cEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE------
Confidence 58999999988521 234699999999999999999999999999999999998764 345442
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCC
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~~~ 812 (1230)
..++.++||+|++.++. .|++||+.|+. ..+ +++.+++++..++. +-.+|.+|+.+. +
T Consensus 676 ---~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~------~~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~ 740 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIFN-ATVRENILFGS------DFE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGV-N 740 (1495)
T ss_pred ---EecCcEEEEcCcccccc-ccHHHHhhcCC------ccC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-c
Confidence 24567999999999886 59999999862 112 23456667666653 334677887654 6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||||++++|+|++||||||+||+++++.+++. ++.. .+|+|+|++||+++ ....+|+
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~ 808 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDR 808 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCE
Confidence 999999999999999999999999999999999999988764 5543 36899999999986 3566787
No 377
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=4.9e-27 Score=316.27 Aligned_cols=186 Identities=22% Similarity=0.348 Sum_probs=152.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEE-EEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~-G~i~~~g~~ 738 (1230)
.++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|.|..++ .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE----
Confidence 58999999988521 234699999999999999999999999999999999998764 46 78875
Q ss_pred cChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCC
Q 000907 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPGVN 811 (1230)
Q Consensus 739 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~ 811 (1230)
++.++||+|++.++. .|++||+.|+. .. .+++.+++++..+|.+ -.+|.+|..+ .
T Consensus 678 ------~~~Iayv~Q~p~Lfn-gTIreNI~fg~------~~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~ 739 (1622)
T PLN03130 678 ------RGTVAYVPQVSWIFN-ATVRDNILFGS------PF----DPERYERAIDVTALQHDLDLLPGGDLTEIGERG-V 739 (1622)
T ss_pred ------cCeEEEEcCccccCC-CCHHHHHhCCC------cc----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCC-C
Confidence 346899999998886 69999999862 11 1344677777776643 3467777754 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||||++++|+|++||||||+||+++++.+.+ .++... +|+|+|++||+++ ....+|+
T Consensus 740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~ 808 (1622)
T PLN03130 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDR 808 (1622)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCE
Confidence 699999999999999999999999999999999999998865 566543 6899999999985 4567787
No 378
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2e-27 Score=242.95 Aligned_cols=185 Identities=23% Similarity=0.308 Sum_probs=150.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhh-hh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE-LS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~-~~ 73 (1230)
|++|.|... ..+|+|.+||.++.... +|+.+||+.|+..|.+.+||.||+..+..-. . ++++..-. .+
T Consensus 47 LR~lngl~d---~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~-~-s~~~slfglfs 121 (258)
T COG3638 47 LRSLNGLVD---PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGY-T-STWRSLFGLFS 121 (258)
T ss_pred HHHHhcccC---CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhccc-c-hHHHHHhCCCC
Confidence 466777654 45899999998876543 3578999999999999999999999875321 1 11111110 11
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
+++ ++..-..|+.+|+.+.+-++.+ .|||||+|||+|||||+++|+|++-
T Consensus 122 k~d-------------------------k~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILA 171 (258)
T COG3638 122 KED-------------------------KAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILA 171 (258)
T ss_pred HHH-------------------------HHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEec
Confidence 221 2234457899999999998886 4999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQF 221 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~ 221 (1230)
|||+++||+.++.+||+.|+++++..|.|+|+++|| .+-+.+.||||+-|++|+++|.||.+++.+.
T Consensus 172 DEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred CCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 999999999999999999999999888898888876 6788999999999999999999999987654
No 379
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.8e-27 Score=248.63 Aligned_cols=162 Identities=23% Similarity=0.321 Sum_probs=137.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|||... -.+|+|.++|.+++. ....+|||.|++.|+|.+||+||+.|+.+.++.. +
T Consensus 46 LriiAGL~~---p~~G~V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~----------~------ 104 (248)
T COG1116 46 LRLIAGLEK---PTSGEVLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS----------K------ 104 (248)
T ss_pred HHHHhCCCC---CCCceEEECCcccCC--CCCCEEEEeccCcccchhhHHhhheehhhccccc----------h------
Confidence 578888876 347999999999843 3567999999999999999999999998765311 0
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
++.+++++..|+..||.+..| ...+.|||||||||+|||||+.+|+||+||||.++|
T Consensus 105 ------------------~e~~~~a~~~L~~VgL~~~~~-----~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 105 ------------------AEARERAKELLELVGLAGFED-----KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred ------------------HhHHHHHHHHHHHcCCcchhh-----cCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 112235788999999999988 455789999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCC
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDG 207 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G 207 (1230)
|+.|+.++++.|.++.+..+. |++.++|.-+|+..++|||++|+++
T Consensus 162 DalTR~~lq~~l~~lw~~~~~-TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 162 DALTREELQDELLRLWEETRK-TVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hHHHHHHHHHHHHHHHHhhCC-EEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999876555 5556788899999999999999984
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.94 E-value=4e-27 Score=236.46 Aligned_cols=134 Identities=35% Similarity=0.546 Sum_probs=118.8
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCccCCCCCHHH
Q 000907 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 689 L~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
|+|||+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998764 48999999998764 456778999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
+ ..++.++++++.+++.+..++.++... ..||+|||||++||+||+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 223457899999999988887775543 6799999999999999999999999999996
No 381
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=1.5e-27 Score=266.47 Aligned_cols=190 Identities=25% Similarity=0.377 Sum_probs=159.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|||... -.+|+|.+||++++..-. +|.+|+|.|+-.|||+|||+||+.|+.+++....
T Consensus 48 LR~IAGfe~---p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~--------------- 109 (352)
T COG3842 48 LRMIAGFEQ---PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK--------------- 109 (352)
T ss_pred HHHHhCCCC---CCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC---------------
Confidence 578888865 458999999999987543 6899999999999999999999999987442110
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.++.+++|++.|+.++|++-++- ....|||||||||++||||+.+|++|+||||.|+
T Consensus 110 ------------------~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSa 166 (352)
T COG3842 110 ------------------KAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSA 166 (352)
T ss_pred ------------------HHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccc
Confidence 01123468999999999997774 4457999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhh
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l 239 (1230)
||..-+.++..-|+++.+..|.|+|. ++|...|.+.+.|||+||++|++...|+++++ |..|...-.|||+
T Consensus 167 LD~kLR~~mr~Elk~lq~~~giT~i~-VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei--------Y~~P~~~fVA~Fi 237 (352)
T COG3842 167 LDAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFI 237 (352)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEE-EECCHHHHhhhccceEEccCCceeecCCHHHH--------hhCcchHHHHHHh
Confidence 99999999999999999877665554 66788999999999999999999999999998 4456666667765
Q ss_pred h
Q 000907 240 Q 240 (1230)
Q Consensus 240 ~ 240 (1230)
-
T Consensus 238 G 238 (352)
T COG3842 238 G 238 (352)
T ss_pred C
Confidence 4
No 382
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=3.7e-26 Score=236.73 Aligned_cols=203 Identities=21% Similarity=0.290 Sum_probs=167.2
Q ss_pred eeEEeeeEEEEecCcc--------ccccc---ccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeE
Q 000907 660 SLTFDEITYSVDMPQE--------MKRRG---VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI 728 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~ 728 (1230)
.+.++||+..+..... +++.. .......+|+||||++++||.+||+|+||||||||||+|+|..+|.
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 4677778776665421 11111 1345678999999999999999999999999999999999988764
Q ss_pred EEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 729 TGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 729 ~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
+|+|.++|.-... ..=.-.+.|.+|.+||+.+-+.+. ..+.++.++.++++++-.+|.+..|..+
T Consensus 81 ~G~v~v~G~v~~l---------i~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPL---------IELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehh---------hhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 8999999964211 111223557899999999876653 4567788889999999999999988875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+|.||+-||+.|.|.-.+|+||++||-.+--|+.-++.-.+.++++.++++|+|+++|+++ .|-+..|+
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~ 216 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDR 216 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCe
Confidence 579999999999999999999999999999999999999999999999888899999999987 67777787
No 383
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.4e-27 Score=225.27 Aligned_cols=199 Identities=24% Similarity=0.317 Sum_probs=154.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP- 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 738 (1230)
.+..+|++.++.+... ..-...+|+|+||+++.|||+++=|||||||||||++|-|.+.++ +|+|.+.-..
T Consensus 4 ~l~v~~~~KtFtlH~q------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d--~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeec------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC--CceEEEEeCcc
Confidence 4667777766654321 011346999999999999999999999999999999999987654 7888875432
Q ss_pred -cC-----h----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 739 -KN-----Q----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 739 -~~-----~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
++ . .-.++.+|||.|.-...|.....|-+.-...-+ ....+....++.+++..+.+.+..=.+ +
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L---a 149 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL---A 149 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC---C
Confidence 11 1 234567899999988888776666554443222 345566667788999999986543222 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
+..+||||+|||.|||.++.|-+||+|||||++||..+++.++++|++.+..|..+|=+-||-.
T Consensus 150 -PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee 213 (235)
T COG4778 150 -PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE 213 (235)
T ss_pred -CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence 4579999999999999999999999999999999999999999999998888999999999853
No 384
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.6e-28 Score=266.45 Aligned_cols=169 Identities=25% Similarity=0.429 Sum_probs=140.7
Q ss_pred ceeEEEEECCccCCCC---cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEF---VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~---~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|+|++||.|++.. ..|+.+|.||||.++|.+ |+..||+|+..-. +.+|
T Consensus 590 v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~A------------snee------------- 643 (790)
T KOG0056|consen 590 VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSA------------SNEE------------- 643 (790)
T ss_pred ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCC------------ChHH-------------
Confidence 4589999999998753 346899999998887765 9999999974211 1111
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
..+++++..++|.|+ +.+++++|+||++|.| |||||||||+|||++++.|.|++|||+||+||..++++|+
T Consensus 644 -----vyaAAkAA~IHdrIl---~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQ 714 (790)
T KOG0056|consen 644 -----VYAAAKAAQIHDRIL---QFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQ 714 (790)
T ss_pred -----HHHHHHHhhHHHHHh---cCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHH
Confidence 112334455677665 5999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.+|.+++. ++|+|+ +.|..+++.+. |.|+++++|++++.|.|+|++.
T Consensus 715 aaL~rlca--~RTtIV-vAHRLSTivnA-D~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 715 AALARLCA--NRTTIV-VAHRLSTIVNA-DLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHHHHhc--CCceEE-Eeeeehheecc-cEEEEEeCCeEeecCcHHHHHh
Confidence 99999884 677665 66778888886 9999999999999999999975
No 385
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-27 Score=261.60 Aligned_cols=169 Identities=25% Similarity=0.449 Sum_probs=140.3
Q ss_pred ceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|.|+++|.++.+.. .|+.+|.|||+-+||.+ |+..|+.|+.. .++.+|..
T Consensus 315 ~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~------------~at~eev~----------- 370 (497)
T COG5265 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP------------DATAEEVG----------- 370 (497)
T ss_pred CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc------------cccHHHHH-----------
Confidence 34799999999987543 46899999998887765 99999999753 12222221
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
++.++.++.++|.. ||+++||.||+.|.+ |||||||||+|||+++++|+||+|||+||+||++|+.+|+
T Consensus 371 -------aaa~~aqi~~fi~~---lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq 439 (497)
T COG5265 371 -------AAAEAAQIHDFIQS---LPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439 (497)
T ss_pred -------HHHHHhhhhHHHHh---Cchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHH
Confidence 11223345666665 999999999998886 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.+|+++++ ++|+++ |.|..+++.+. |.|+||++|++++.|+|+++++
T Consensus 440 ~~l~~~~~--~rttlv-iahrlsti~~a-deiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 440 AALREVSA--GRTTLV-IAHRLSTIIDA-DEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHHhC--CCeEEE-EeehhhhccCC-ceEEEeeCCEEEecCcHHHHHH
Confidence 99999873 666665 77888888886 9999999999999999999976
No 386
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=3.3e-26 Score=286.08 Aligned_cols=187 Identities=24% Similarity=0.287 Sum_probs=140.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++. ++.+|+||||++++||++||+|||||||||||++|+|..++ .+|+|.++|..
T Consensus 4 l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~~~~~-- 66 (635)
T PRK11147 4 ISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIYEQDL-- 66 (635)
T ss_pred EEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEeCCCC--
Confidence 77888888763 35699999999999999999999999999999999998765 37999998631
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHH------------------------------HHhc--CCCCCCHHHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYS------------------------------AWLR--LSSEVNSKTREMFV 788 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~------------------------------~~~~--~~~~~~~~~~~~~~ 788 (1230)
.++|++|.+......++.+++..+ ..+. .. .........++
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 139 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRI 139 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHH
Confidence 256777765433334565543211 0000 00 00001123467
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 000907 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCT 868 (1230)
Q Consensus 789 ~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~ 868 (1230)
+++++.+|+.. ++. +..|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++
T Consensus 140 ~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvliv 209 (635)
T PRK11147 140 NEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFI 209 (635)
T ss_pred HHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEE
Confidence 88999999863 433 3579999999999999999999999999999999999999999999876 3599999
Q ss_pred ecCCCHHHHHHHhc
Q 000907 869 IHQPSIDIFEAFDA 882 (1230)
Q Consensus 869 ~H~~~~~i~~~fd~ 882 (1230)
||++. .+.+..|+
T Consensus 210 sHd~~-~l~~~~d~ 222 (635)
T PRK11147 210 SHDRS-FIRNMATR 222 (635)
T ss_pred eCCHH-HHHHhcCe
Confidence 99976 34455566
No 387
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=2.8e-27 Score=252.86 Aligned_cols=180 Identities=28% Similarity=0.383 Sum_probs=148.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc---cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~---~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
||+|+|.++. .+|+|+++|+++.+... .|.+|||||+....+.+||+|-+.+++.=. ..++..
T Consensus 45 Lk~l~g~l~p---~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~--~~~~~~--------- 110 (258)
T COG1120 45 LKCLAGLLKP---KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH--LGLFGR--------- 110 (258)
T ss_pred HHHHhccCCC---CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc--cccccC---------
Confidence 5788887763 47999999999976543 489999999998889999999999875310 011100
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
..++..+.++..|+.+|+.+-++..+. .|||||||||.|||||+++|+||+|||||
T Consensus 111 -------------------~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPT 166 (258)
T COG1120 111 -------------------PSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPT 166 (258)
T ss_pred -------------------CCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCc
Confidence 011123358889999999999997765 59999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|.||.....+|++.++++++..|.|+|+++ |........+|++++|++|+++.+|+++++.
T Consensus 167 s~LDi~~Q~evl~ll~~l~~~~~~tvv~vl-HDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 167 SHLDIAHQIEVLELLRDLNREKGLTVVMVL-HDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999986667666655 6678899999999999999999999998763
No 388
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=2e-26 Score=274.01 Aligned_cols=181 Identities=27% Similarity=0.363 Sum_probs=144.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++..+ +.+.+++|+|+++.+|+.+||+|+||||||||||+|+|...+ .+|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~--~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC--CCCeEeecCC--
Confidence 36677777765 457899999999999999999999999999999999998765 3799877542
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhc-------------CCCC--------------CCHHHHHHHHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLR-------------LSSE--------------VNSKTREMFVEEVM 792 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~~~~~l 792 (1230)
-.++|++|++...+..||.+.+.-+..-. .+.. ....+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 25899999999999999999886542100 0000 00011124567788
Q ss_pred HHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000907 793 ELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 872 (1230)
Q Consensus 793 ~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 872 (1230)
..+|+.+. ++.+ ..||||||.|++||++|+.+|++|||||||+.||..+...+-+.|++. .| |+|+||||=
T Consensus 140 ~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 5554 469999999999999999999999999999999999999999999854 56 999999984
No 389
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=4.5e-27 Score=293.92 Aligned_cols=176 Identities=26% Similarity=0.375 Sum_probs=134.8
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
+.|+|.. + .+|+|++||.|+++.. .|+.++||+|++.+|. .||||||.++.+- .+.++ .
T Consensus 394 ~lL~g~~-p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~~------------~~~ee-i 455 (588)
T PRK11174 394 NALLGFL-P---YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGNPD------------ASDEQ-L 455 (588)
T ss_pred HHHhcCC-C---CCcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCCCC------------CCHHH-H
Confidence 4566655 2 4899999999987654 4688999999988776 5999999996320 00000 0
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+.. +.+ ...|.+- .|+++.||.||++| .+||||||||++|||||+++|+||+||||||
T Consensus 456 -------------~~al---~~a-~l~~~i~---~lp~G~dT~vge~G-~~LSGGQrQRialARAll~~~~IliLDE~TS 514 (588)
T PRK11174 456 -------------QQAL---ENA-WVSEFLP---LLPQGLDTPIGDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTA 514 (588)
T ss_pred -------------HHHH---HHh-CHHHHHH---hcccccccccccCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 0000 000 1122332 38899999999876 4699999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..|.+.|+++. .++|+|+..|++ +....+|+|++|++|++++.|+|+++.+
T Consensus 515 aLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 515 SLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred CCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999999998775 357777766665 3456689999999999999999999864
No 390
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.7e-27 Score=234.94 Aligned_cols=183 Identities=20% Similarity=0.385 Sum_probs=139.3
Q ss_pred CCCceeEEEEECCccCCCCc-----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCC
Q 000907 10 SSLKASGKVTYNGHDMHEFV-----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPD 84 (1230)
Q Consensus 10 ~~~~~~G~V~vnG~~~~~~~-----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~ 84 (1230)
++.+++|+|.++|+++.+.. .|+.+|.|.|.+.-|| +||+||+.|+.++.+..+
T Consensus 61 ~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-------------------- 119 (253)
T COG1117 61 PGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-------------------- 119 (253)
T ss_pred cCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch--------------------
Confidence 45689999999999986542 4799999999999999 899999999998875321
Q ss_pred chhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHH
Q 000907 85 ADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 164 (1230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~s 164 (1230)
.++++.+++....+. ..|++=+.|. ....+|||||+||++|||||.-+|+||+||||||+||+.+
T Consensus 120 ~~ldeiVe~sLk~Aa----LWdEVKDrL~-----------~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIs 184 (253)
T COG1117 120 KELDEIVESSLKKAA----LWDEVKDRLH-----------KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIS 184 (253)
T ss_pred HHHHHHHHHHHHHhH----hHHHhHHHhh-----------CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchh
Confidence 112222222222221 1222222111 1224699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhh
Q 000907 165 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239 (1230)
Q Consensus 165 a~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l 239 (1230)
+..|-+.+.++++ .-||+.++|.+.++....|+...+..|+++++|+.+++ |..|.+..+.||+
T Consensus 185 T~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 185 TLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred HHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999998874 44555577889999999999999999999999999987 3456665555554
No 391
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.94 E-value=1.9e-26 Score=264.68 Aligned_cols=176 Identities=19% Similarity=0.297 Sum_probs=145.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-------cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-------~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
|++|+|..+ ..+|+|++||.++..... ++.++||+|++.+++++||+||+.|+.++.+. +
T Consensus 36 Lr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~----------~ 102 (363)
T TIGR01186 36 VRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW----------P 102 (363)
T ss_pred HHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCC----------C
Confidence 467888775 358999999999875432 56899999999999999999999998654321 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ ..+.++++++.+||++..+...+ .|||||||||+|||||+.+|+|++|
T Consensus 103 ~~~------------------------~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 103 EQE------------------------RKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred HHH------------------------HHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 011 12246788999999888876664 5999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||||||+.++..+++.|+++.+..++|++ .++|...++..++|+|++|++|++++.|+++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii-~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIV-FITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEE-EEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999998764455555 5667778999999999999999999999998874
No 392
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.7e-27 Score=269.25 Aligned_cols=177 Identities=26% Similarity=0.419 Sum_probs=135.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+++|+|.+++ .+|+|++||.+.++.. +++.++||+|++.+|+ .|+||||.++..-. +.++
T Consensus 364 l~lL~G~~~~---~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~~------------s~e~- 426 (559)
T COG4988 364 LNLLLGFLAP---TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPDA------------SDEE- 426 (559)
T ss_pred HHHHhCcCCC---CCceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCcC------------CHHH-
Confidence 3567787763 5899999999987654 6799999999998777 59999999974310 1111
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
+.+...+ ..+.+.+.-+++.||.||+.| +||||||+|||++||||+++++++++||||
T Consensus 427 -------------i~~al~~--------a~l~~~v~~p~GLdt~ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpT 484 (559)
T COG4988 427 -------------IIAALDQ--------AGLLEFVPKPDGLDTVIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPT 484 (559)
T ss_pred -------------HHHHHHH--------hcHHHhhcCCCcccchhccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 1111100 012222233678899999755 689999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
++||..|+..|.+.|.++++ ++|+++ ++|....+. .+|+|++|++|+++++|+++++.+
T Consensus 485 A~LD~etE~~i~~~l~~l~~--~ktvl~-itHrl~~~~-~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 485 AHLDAETEQIILQALQELAK--QKTVLV-ITHRLEDAA-DADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred cCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcChHHHh-cCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999886 466555 445444444 459999999999999999999853
No 393
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=265.93 Aligned_cols=176 Identities=24% Similarity=0.352 Sum_probs=145.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|.+||.++.... .++.+|||+|++.++|++||+||+.|+.+.++. +..
T Consensus 47 Lr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~----------~~~---- 109 (356)
T PRK11650 47 LRMVAGLER---ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM----------PKA---- 109 (356)
T ss_pred HHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC----------CHH----
Confidence 578888765 35899999999886532 247899999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|..+ +.|||||||||+|||||+.+|++|+|||||||
T Consensus 110 --------------------~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 110 --------------------EIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred --------------------HHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11234778999999998888665 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLY-VTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999987755566555 556668999999999999999999999999873
No 394
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.5e-26 Score=221.24 Aligned_cols=178 Identities=29% Similarity=0.358 Sum_probs=131.7
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee---c-----Chhc----ccceEEEE
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---K-----NQET----FTRISGYC 751 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~---~-----~~~~----~~~~~~~v 751 (1230)
+...--+||||++.|||+++|+|.|||||||||+||+++..+. .|+|.+.-.+ . .+.+ .+..-|+|
T Consensus 17 g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~V 94 (258)
T COG4107 17 GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFV 94 (258)
T ss_pred CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC--CCeEEEEcCCCCchhHhhhchHHHHHHhhhcccee
Confidence 3445678999999999999999999999999999999998764 7888876532 1 1111 12245999
Q ss_pred ccCCc--cCCC----CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHH
Q 000907 752 EQNDI--HSPY----VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 825 (1230)
Q Consensus 752 ~q~~~--~~~~----ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~ 825 (1230)
.|++. +-.. -.+-|-++-... | . -....+...+.++..++...+ +. ..++.+|||++||+.|||
T Consensus 95 hQnP~DGLRm~VSAG~NiGERlma~G~-R---H--YG~iR~~a~~WL~~VEI~~~R--iD--D~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 95 HQNPRDGLRMQVSAGGNIGERLMAIGA-R---H--YGNIRAEAQDWLEEVEIDLDR--ID--DLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred ecCccccceeeeccCCccchhHHhhhh-h---h--hhhHHHHHHHHHHhcccCccc--cc--CcccccchHHHHHHHHHH
Confidence 99864 2221 233444332111 1 0 112233456777877775422 11 125689999999999999
Q ss_pred HHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 000907 826 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 873 (1230)
Q Consensus 826 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 873 (1230)
-|++.|+++|+||||.|||..-+..++++++.+..+ |..++++|||..
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~ 213 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH
Confidence 999999999999999999999999999999999755 999999999975
No 395
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=1.8e-26 Score=265.93 Aligned_cols=176 Identities=21% Similarity=0.338 Sum_probs=146.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|.+||+++.... .++.+|||+|+..+||++||+||+.|+.+.+.. .+.
T Consensus 47 Lr~iaGl~~---p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~----------~~~---- 109 (353)
T TIGR03265 47 LRIIAGLER---QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM----------GRA---- 109 (353)
T ss_pred HHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC----------CHH----
Confidence 578888765 35899999999886432 257899999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|... +.|||||||||+|||||+.+|++++|||||||
T Consensus 110 --------------------~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 110 --------------------EVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred --------------------HHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 11234788999999999888655 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||..++.++.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++++|+++++.
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~-vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIM-VTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999987755666655 556668999999999999999999999998874
No 396
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=1.4e-26 Score=225.56 Aligned_cols=176 Identities=23% Similarity=0.335 Sum_probs=146.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||.+||... -.+|+|++||.+.+.... +|-++.+.||+.+|..|||++|+.++.. ++-+ +..++
T Consensus 42 LnLIAGF~~---P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~Lk------L~a~~--- 106 (231)
T COG3840 42 LNLIAGFET---PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGLK------LNAEQ--- 106 (231)
T ss_pred HHHHHhccC---CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---cccc------cCHHH---
Confidence 456677654 358999999999875443 5889999999999999999999998742 1111 11111
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
++.++.++...||..+.+-+-| .|||||||||++||.|+++-+||+||||.|+
T Consensus 107 ----------------------r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 107 ----------------------REKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred ----------------------HHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 2347889999999999886554 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.-+.++...+.++++..+.|+++.+||| +++...+|+++++++|+|+++|+.++..
T Consensus 160 LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999988888888877776 6888899999999999999999998864
No 397
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.94 E-value=6.4e-27 Score=290.78 Aligned_cols=168 Identities=27% Similarity=0.412 Sum_probs=135.3
Q ss_pred eeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhHH
Q 000907 14 ASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVF 90 (1230)
Q Consensus 14 ~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 90 (1230)
.+|+|++||.|+++.. .|+.++||+|++.+|. .||+|||.++.+- ++.+| .
T Consensus 382 ~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~------------at~ee-------------i 435 (567)
T COG1132 382 TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD------------ATDEE-------------I 435 (567)
T ss_pred CCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC------------CCHHH-------------H
Confidence 5899999999998764 4689999999888887 7999999997531 11111 0
Q ss_pred HHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHHH
Q 000907 91 MKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVN 170 (1230)
Q Consensus 91 ~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~~ 170 (1230)
.++ ++.+ ...|++.+ |++++||.||++| .+||||||||++||||++++|+||+||||||+||+.|+..|++
T Consensus 436 ~~a----~k~a-~~~d~I~~---lp~g~dt~vge~G-~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~ 506 (567)
T COG1132 436 EEA----LKLA-NAHEFIAN---LPDGYDTIVGERG-VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506 (567)
T ss_pred HHH----HHHh-ChHHHHHh---CcccccceecCCC-ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHH
Confidence 111 1111 23455555 7999999999655 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 171 SLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 171 ~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.++++.+ ++|+++ |.|+.+++.+ +|+|+||++|++++.|+|+++.+
T Consensus 507 ~l~~l~~--~rT~ii-IaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 507 ALKKLLK--GRTTLI-IAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHhc--CCEEEE-EeccHhHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9997653 567777 6666678877 89999999999999999999976
No 398
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.94 E-value=2.7e-26 Score=262.26 Aligned_cols=176 Identities=24% Similarity=0.333 Sum_probs=144.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|..+. .+|+|.++|.++.... .++.+|||+|+..+++.+||+||+.|..+..+. ..
T Consensus 48 lr~I~gl~~p---~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~----------~~ 114 (343)
T TIGR02314 48 IRCVNLLERP---TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----------PK 114 (343)
T ss_pred HHHHhcCCCC---CceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC----------CH
Confidence 4677777653 4799999999986532 256899999999999999999999987543210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +.++.++++++.+||.+..|... +.|||||||||+|||||+++|+||+||
T Consensus 115 ~------------------------~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlD 165 (343)
T TIGR02314 115 D------------------------EIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCD 165 (343)
T ss_pred H------------------------HHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 0 11224678999999999888665 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||||||+.++..+++.|+++++..+.|+|+ ++|....+...||+|++|++|++++.|+++++.
T Consensus 166 EPts~LD~~t~~~i~~lL~~l~~~~g~tiil-iTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 166 EATSALDPATTQSILELLKEINRRLGLTILL-ITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999998755666555 556678999999999999999999999998873
No 399
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.6e-26 Score=264.00 Aligned_cols=176 Identities=23% Similarity=0.348 Sum_probs=146.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|++||.++..... ++.+|||+|+..+||.+||+||+.|+.+.++.. ..
T Consensus 49 Lr~IaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~----------~~---- 111 (351)
T PRK11432 49 LRLVAGLEK---PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP----------KE---- 111 (351)
T ss_pred HHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC----------HH----
Confidence 577888865 358999999999865433 478999999999999999999999987543210 00
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|... +.|||||||||+|||||+.+|+||+|||||||
T Consensus 112 --------------------~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 112 --------------------ERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred --------------------HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 11234788999999988877554 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999997755566555 566678999999999999999999999999873
No 400
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.7e-26 Score=242.77 Aligned_cols=177 Identities=23% Similarity=0.356 Sum_probs=144.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEeccc---ccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH---DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~---d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|.|.++ ..+|+|.++|.+.+....+..+|||||. |+-|| +||+|-+..+.--+. .+++.+.
T Consensus 47 lK~iLGll~---p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~--g~~~~~~------- 113 (254)
T COG1121 47 LKAILGLLK---PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKK--GWFRRLN------- 113 (254)
T ss_pred HHHHhCCCc---CCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccc--ccccccc-------
Confidence 467777765 3489999999988765556789999995 67777 699999988743221 1121111
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
++.++.+++.|+.+|+.+.+|-.||+ |||||+|||-|||||+++|++|+|||||
T Consensus 114 ---------------------~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 114 ---------------------KKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred ---------------------HHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 11134689999999999999999985 9999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
+|+|+.++..+.+.|+++++. |+| |+.+||....+...||+|+.|+ +++++.|+++++.
T Consensus 168 ~gvD~~~~~~i~~lL~~l~~e-g~t-Il~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 168 TGVDVAGQKEIYDLLKELRQE-GKT-VLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCE-EEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 999999999999999999875 555 5568899999999999999996 5788899998874
No 401
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.93 E-value=3.4e-26 Score=259.79 Aligned_cols=176 Identities=24% Similarity=0.343 Sum_probs=145.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
+|+|+|.+. ..+|+|+++|+++.... .++.+|||+|++.+++.+||+||+.|.+++.+.. ..
T Consensus 50 l~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~--- 113 (306)
T PRK13537 50 LRMLLGLTH---PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS----------AA--- 113 (306)
T ss_pred HHHHhcCCC---CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC----------HH---
Confidence 467788765 35799999999976432 3578999999999999999999999876653210 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+....++.+++.+||.+.+|+.++ +||||||||++||+||+.+|++++|||||+
T Consensus 114 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 114 ---------------------AARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred ---------------------HHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 011236778999999999998885 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.++..+++.|+++++ .|.|+++ ++|..+++...+|+|++|++|++++.|+.+++..
T Consensus 168 gLD~~~~~~l~~~l~~l~~-~g~till-~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLA-RGKTILL-TTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999865 4555554 5566789999999999999999999999998864
No 402
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=3.5e-26 Score=263.58 Aligned_cols=179 Identities=18% Similarity=0.307 Sum_probs=145.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|..... ..+|+|.++|.++.... .++.+|||+|+..++|.+||+|||.|+.+.++. ...
T Consensus 48 Lr~iaGl~~p~-~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~----------~~~---- 112 (362)
T TIGR03258 48 LRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM----------PKA---- 112 (362)
T ss_pred HHHHhCCCCCC-CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC----------CHH----
Confidence 57788876532 11399999999886432 247899999999999999999999998654310 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|++|+|||||||
T Consensus 113 --------------------~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvaLARAL~~~P~llLLDEP~s~ 167 (362)
T TIGR03258 113 --------------------DIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167 (362)
T ss_pred --------------------HHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 112347889999999998887664 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++.++.+.|+++.+..++++++.++|...++..++|+|++|++|+++..|+++++.
T Consensus 168 LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 168 LDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999887542344555667778999999999999999999999999884
No 403
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=4.6e-26 Score=263.51 Aligned_cols=176 Identities=24% Similarity=0.330 Sum_probs=145.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|.++|.++.... .++.+|||+|+..+||.+||+|||.|+.+.++. ...
T Consensus 57 Lr~IaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~----------~~~---- 119 (375)
T PRK09452 57 LRLIAGFET---PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT----------PAA---- 119 (375)
T ss_pred HHHHhCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC----------CHH----
Confidence 578888875 34799999999886432 257899999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|..+ ..|||||||||+|||||+.+|++|+|||||||
T Consensus 120 --------------------~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 120 --------------------EITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred --------------------HHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 11224678999999998888766 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||..++..+.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~-vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVF-VTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999998755555555 666678999999999999999999999998873
No 404
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.93 E-value=1.2e-25 Score=303.68 Aligned_cols=186 Identities=25% Similarity=0.400 Sum_probs=147.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc--CCcEEEECC---
Confidence 5899999998741 124699999999999999999999999999999999998765 479999987
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCC
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~~~ 812 (1230)
.++||+|++.++ ..|++||+.|+.. ... ++.+++++..++. +-.++.+|..+ .+
T Consensus 700 -------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~----~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g-~~ 760 (1522)
T TIGR00957 700 -------SVAYVPQQAWIQ-NDSLRENILFGKA------LNE----KYYQQVLEACALLPDLEILPSGDRTEIGEKG-VN 760 (1522)
T ss_pred -------EEEEEcCCcccc-CCcHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhcCCCCCceecCCC-CC
Confidence 489999998876 5799999988521 111 1223344433332 22345666543 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHH--HhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT--VDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~--~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||||++.+|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++. ....|+
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ 830 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDV 830 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCE
Confidence 9999999999999999999999999999999999999999988653 2358999999999863 345777
No 405
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.6e-26 Score=261.83 Aligned_cols=176 Identities=21% Similarity=0.285 Sum_probs=145.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|+++|.++.... .++.+|||+|+..+||.+||.||+.|+.+.+.. ...
T Consensus 62 Lr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~----------~~~---- 124 (377)
T PRK11607 62 LRMLAGFEQ---PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL----------PKA---- 124 (377)
T ss_pred HHHHhCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC----------CHH----
Confidence 577888865 34799999999876432 357899999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|..+ +.|||||||||+|||||+.+|++|+|||||||
T Consensus 125 --------------------~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 125 --------------------EIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred --------------------HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11234778999999998877655 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||..++..+.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVM-VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999887655655555 556678999999999999999999999999874
No 406
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=259.26 Aligned_cols=180 Identities=23% Similarity=0.314 Sum_probs=145.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|..+. .+|+|++||+++.... .++.++||+|++.+++.+||+||+.|+.+...... . .+.
T Consensus 45 Lr~IaGl~~p---~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~---~---~~~----- 110 (353)
T PRK10851 45 LRIIAGLEHQ---TSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE---R---PNA----- 110 (353)
T ss_pred HHHHhCCCCC---CCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc---C---CCH-----
Confidence 5778887653 4799999999886432 24679999999999999999999999865321000 0 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
++.++.++++++.+||++..|..+ +.|||||||||+|||||+.+|++|+|||||||
T Consensus 111 -------------------~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~ 166 (353)
T PRK10851 111 -------------------AAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGA 166 (353)
T ss_pred -------------------HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 011234678999999998888665 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.| ++.++|...++..++|+|++|++|++++.|+++++.
T Consensus 167 LD~~~r~~l~~~L~~l~~~~g~t-ii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 167 LDAQVRKELRRWLRQLHEELKFT-SVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999988644555 455667788999999999999999999999998874
No 407
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=1e-25 Score=256.37 Aligned_cols=176 Identities=27% Similarity=0.381 Sum_probs=144.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.++. .+|+|.++|.++... ..++.+|||+|++.+++.+||+||+.|.+++.+.. ..
T Consensus 36 l~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~--- 99 (302)
T TIGR01188 36 IRMLTTLLRP---TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP----------KD--- 99 (302)
T ss_pred HHHHhCCCCC---CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC----------HH---
Confidence 4678887753 479999999987542 23467999999999999999999999976543210 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||.+..|+.++ .|||||||||+||+||+.+|++|+|||||+
T Consensus 100 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 100 ---------------------EAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred ---------------------HHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 011236789999999998888775 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.++..+++.|+++++ .|.|+++ ++|...++...+|+|++|++|++++.|+.+++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~-~g~tvi~-~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKE-EGVTILL-TTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999875 3555555 5566789999999999999999999999998755
No 408
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.3e-25 Score=235.29 Aligned_cols=165 Identities=24% Similarity=0.353 Sum_probs=133.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------c-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------P-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
|++|+|...+ .+|+|.++|.+++... . ++.+|||.|+-.|+|++||+||+.....+.+...
T Consensus 48 Lniig~ld~p---t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~--------- 115 (226)
T COG1136 48 LNLLGGLDKP---TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA--------- 115 (226)
T ss_pred HHHHhcccCC---CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCCh---------
Confidence 4556665543 6899999998887543 1 3689999999999999999999998665543110
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCccccc-ccccCCccccCcccccchhHHHHHHhcCCceee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCAD-TVVGDEMLRGISGGQRKRVTTGEMLVGPAHALF 152 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~d-T~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILl 152 (1230)
. +.++..+.+++.+||.+..+ ... ..|||||||||+|||||+.+|+|++
T Consensus 116 -~------------------------~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIARAL~~~P~iil 165 (226)
T COG1136 116 -G------------------------RRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIARALINNPKIIL 165 (226)
T ss_pred -h------------------------HHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHHHHhcCCCeEE
Confidence 0 11234678999999997776 544 4699999999999999999999999
Q ss_pred eeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000907 153 MDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 209 (1230)
Q Consensus 153 LDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~v 209 (1230)
.||||..||+.++..|++.|+++++..|.|+|+.+|- +++...+||++.|.+|++
T Consensus 166 ADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd--~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 166 ADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD--PELAKYADRVIELKDGKI 220 (226)
T ss_pred eeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC--HHHHHhCCEEEEEeCCee
Confidence 9999999999999999999999998666676665543 578889999999999993
No 409
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.93 E-value=4.9e-25 Score=296.77 Aligned_cols=170 Identities=21% Similarity=0.317 Sum_probs=135.7
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 5699999999999999999999999999999999998775 479999988 3899999998887 49999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
|+.|+.. .... +.+++++..+|. +-.++.+|.. ...||||||||++||||++.+|++++|||
T Consensus 506 NI~~g~~------~~~~----~~~~~~~~~~L~~~l~~l~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDe 574 (1490)
T TIGR01271 506 NIIFGLS------YDEY----RYTSVIKACQLEEDIALFPEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDS 574 (1490)
T ss_pred HHHhccc------cchH----HHHHHHHHHhHHHHHHhccccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9998631 1111 112222222221 1224556654 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||+.++..+.+. ++++. +|+|+|++||++.. ....|+
T Consensus 575 p~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ 616 (1490)
T TIGR01271 575 PFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADK 616 (1490)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCE
Confidence 9999999999999974 66654 58999999999873 345776
No 410
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.92 E-value=1e-25 Score=286.07 Aligned_cols=174 Identities=24% Similarity=0.311 Sum_probs=132.8
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|... ..+|+|++||+++++.. .|+.+|||+|++.+|+ .||+|||.++.... .+..
T Consensus 497 klL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~~~--------------~e~i 558 (686)
T TIGR03797 497 RLLLGFET---PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAPLT--------------LDEA 558 (686)
T ss_pred HHHhCCCC---CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCCCC--------------HHHH
Confidence 55666654 34899999999987653 4689999999988776 69999999864210 0000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+.... + ...+.+. .|+++.||.||++| .+||||||||++|||||+++|+|++||||||
T Consensus 559 -------------~~al~~---a-~l~~~i~---~lp~G~dt~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS 617 (686)
T TIGR03797 559 -------------WEAARM---A-GLAEDIR---AMPMGMHTVISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATS 617 (686)
T ss_pred -------------HHHHHH---c-CcHHHHH---hccccccccccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 000000 0 0122222 37899999999776 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++.+|.+.|+++ ++|+|+..|++ +....+|+|++|++|++++.|+++++.+
T Consensus 618 ~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 618 ALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred CCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999864 46666655554 4456699999999999999999999864
No 411
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=2.8e-24 Score=236.66 Aligned_cols=161 Identities=24% Similarity=0.307 Sum_probs=128.3
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHH
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESL 767 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l 767 (1230)
-|.-=.+++..||+++++||||-||||+.++|+|..+|. +|+ .. .-.++|=||--.--...||++-|
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHH
Confidence 455556888999999999999999999999999987754 454 11 12467777765444678999987
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHH
Q 000907 768 LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 847 (1230)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~ 847 (1230)
.-...-+.. ..-...++.+-|.|++..+..+ .+|||||.|||+||.+|.+++++.+||||++-||++.
T Consensus 423 ~~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 423 RSAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred HHhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 654322111 1123467888899998888775 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCC
Q 000907 848 AAVVMRTVRNTVD-TGRTVVCTIHQPS 873 (1230)
Q Consensus 848 ~~~i~~~l~~~~~-~g~tvi~~~H~~~ 873 (1230)
+..+-+.+|+... .++|.+++-||.-
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEeccee
Confidence 9999999999875 4889999999865
No 412
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.5e-25 Score=244.76 Aligned_cols=176 Identities=26% Similarity=0.345 Sum_probs=140.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC------cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF------VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~------~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++. .+|+|.+||.++... ..++.++||+|++.+++.+||+||+.++.+.... ...
T Consensus 43 l~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~---------~~~ 110 (235)
T cd03261 43 LRLIVGLLRP---DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR---------LSE 110 (235)
T ss_pred HHHHhCCCCC---CceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccC---------CCH
Confidence 4678887653 479999999987542 2356799999999999999999999987532110 000
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +..+.++.+++.+||.+..++.++ .|||||||||+||+||+.+|+|++||
T Consensus 111 ~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 111 E------------------------EIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred H------------------------HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 0 011236778999999888777664 59999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+|||+.++..+++.|+++++..++|+++ ++|...++...+|+|++|++|++++.|+++++
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~-vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIM-VTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEE-EecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999987533556555 55666788999999999999999999998775
No 413
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.3e-25 Score=239.04 Aligned_cols=177 Identities=23% Similarity=0.342 Sum_probs=145.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCC----CCcccceEEEecccc-cccCCCCHHHHHHHHhhccCCCCccchhhhhhHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMH----EFVPQRTAAYISQHD-IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 75 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~----~~~~~~~~~yV~Q~d-~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~ 75 (1230)
++.|+|.+.+ .+|+|.++|.+.+ ....++.+|||.|++ ..+..-||.|-+.|+.+..+. +..
T Consensus 47 ~~~l~GLl~p---~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~----------~~~ 113 (235)
T COG1122 47 LKLLNGLLKP---TSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------PRE 113 (235)
T ss_pred HHHHcCcCcC---CCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCC----------CHH
Confidence 3567777764 4699999999976 233578999999996 345556999999999765431 111
Q ss_pred HHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 76 EKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 76 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
+++++++.+++.+||.+.+|... ..|||||||||+||.+|+.+|++++|||
T Consensus 114 ------------------------e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDE 164 (235)
T COG1122 114 ------------------------EIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDE 164 (235)
T ss_pred ------------------------HHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcC
Confidence 12346889999999999988554 5699999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||||+....++++.++++... ++.+++.++|....+...+|++++|++|+++++|++.++.+
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999874 34455667788999999999999999999999999877643
No 414
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.92 E-value=3.3e-25 Score=254.10 Aligned_cols=176 Identities=25% Similarity=0.325 Sum_probs=145.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.+.. .+|+|.++|.++... ..++.+|||+|++.+++.+||+||+.|.+.+.+.. ..
T Consensus 84 l~~L~Gl~~p---~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~--- 147 (340)
T PRK13536 84 ARMILGMTSP---DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS----------TR--- 147 (340)
T ss_pred HHHHHcCCCC---CceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC----------HH---
Confidence 4678887753 479999999987643 23578999999999999999999999865543200 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++.+|+.++ .||||||||++||+||+.+|++++|||||+
T Consensus 148 ---------------------~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 148 ---------------------EIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred ---------------------HHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 011235678899999999998885 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.++..+++.|+++++ .|.|+++ ++|..+++.+.||+|++|++|++++.|+.+++..
T Consensus 202 gLD~~~r~~l~~~l~~l~~-~g~tili-sSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLA-RGKTILL-TTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999875 4555555 5567789999999999999999999999999865
No 415
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=2.3e-25 Score=278.50 Aligned_cols=177 Identities=18% Similarity=0.260 Sum_probs=136.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|..++ .+|+|++||.++++.. .++.++||+|++.+|+. |++|||.++.... . ++
T Consensus 384 l~lL~gl~~p---~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~-------------d-~~ 445 (592)
T PRK10790 384 ASLLMGYYPL---TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDIS-------------E-EQ 445 (592)
T ss_pred HHHHhcccCC---CCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCCCC-------------H-HH
Confidence 3567777653 3799999999987643 46899999999998875 9999999863110 0 00
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
. .+.... . -.++.++ .|+++.||.||+.+ .+||||||||++|||||+++|+|++|||||
T Consensus 446 i-------------~~a~~~---~--gl~~~i~--~lp~Gldt~i~e~g-~~LSGGqrQRialARaLl~~~~illlDEpt 504 (592)
T PRK10790 446 V-------------WQALET---V--QLAELAR--SLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEAT 504 (592)
T ss_pred H-------------HHHHHH---c--CcHHHHH--hccccccccccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 0 000000 0 0111222 27889999999865 569999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..|.+.|+++.+ ++|+|+..|++ +....+|+|++|++|++++.|+++++.+
T Consensus 505 s~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 505 ANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred ccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999998753 57777777665 4566799999999999999999999864
No 416
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.2e-25 Score=256.73 Aligned_cols=176 Identities=23% Similarity=0.352 Sum_probs=143.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|... ..+|+|.++|.++.... .++.++||+|+..+++.+||+||+.|+.+.++. ...
T Consensus 46 L~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~----------~~~---- 108 (369)
T PRK11000 46 LRMIAGLED---ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA----------KKE---- 108 (369)
T ss_pred HHHHhCCCC---CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC----------CHH----
Confidence 577888765 34799999999886432 246799999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++.+++.+||.+..|..++ .|||||||||+|||||+.+|++|+|||||||
T Consensus 109 --------------------~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 109 --------------------EINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred --------------------HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 011246789999999988887664 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~-vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999987644566555 555667999999999999999999999998874
No 417
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=4.9e-25 Score=226.21 Aligned_cols=176 Identities=19% Similarity=0.319 Sum_probs=140.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
||+|+|..+. .+|+|.++|+|++... .+.-++||||....|++|||+|||..++..+.. ++.
T Consensus 46 Lkti~Gl~~~---~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~---------- 111 (237)
T COG0410 46 LKTIMGLVRP---RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEA---------- 111 (237)
T ss_pred HHHHhCCCCC---CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-ccc----------
Confidence 5677887753 3899999999998643 357899999999999999999999987654321 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcC-CcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLD-LDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lg-L~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
... ..|.+.+.+= |.+-++..-| .|||||+|-++|||||+++|++|+|||
T Consensus 112 ------~~~------------------~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 112 ------QER------------------DLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred ------ccc------------------cHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 000 0222333222 4445566555 499999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||.||-|.-..+|.+.++++++.. +.+|+.+.|+...+.+.+||.+||.+|++++.|+.+++..
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~-g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEG-GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcC-CcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999999998743 4678889999999999999999999999999999998853
No 418
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.2e-25 Score=227.49 Aligned_cols=175 Identities=24% Similarity=0.289 Sum_probs=143.9
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc----ccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhhhhHH
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 75 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~----~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~ 75 (1230)
++|+|..+. .+|+|+++|.+..... ..+.+-+|+||+ .+-|..||++.|.=..+.++..
T Consensus 51 r~l~Gl~~p---~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~------------ 115 (252)
T COG1124 51 RLLAGLEKP---SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS------------ 115 (252)
T ss_pred HHHhcccCC---CCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCcc------------
Confidence 567777653 5899999998876542 357899999997 4889999999997654432110
Q ss_pred HHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 76 EKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 76 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
+.++.+.++|+.+||++..-. .....||||||||++|||||+.+|++|+|||
T Consensus 116 ------------------------~~~~~i~~~L~~VgL~~~~l~----R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE 167 (252)
T COG1124 116 ------------------------KSQQRIAELLDQVGLPPSFLD----RRPHELSGGQRQRIAIARALIPEPKLLILDE 167 (252)
T ss_pred ------------------------HHHHHHHHHHHHcCCCHHHHh----cCchhcChhHHHHHHHHHHhccCCCEEEecC
Confidence 001126779999999876553 4556799999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+||+....+|++.|.++.+. .+.+.+.|.|...-+..+||||+||++|++++.++.+++..
T Consensus 168 ptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 168 PTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred chhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999875 45567779999999999999999999999999999999864
No 419
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=2.3e-24 Score=234.37 Aligned_cols=184 Identities=21% Similarity=0.238 Sum_probs=119.2
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHH-HHHhC--CCC--C--CeEEEEEEECCe-ecChhccc-ceEEEEccCC
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-DVLAG--RKT--R--GYITGNITISGY-PKNQETFT-RISGYCEQND 755 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl-~~l~g--~~~--~--~~~~G~i~~~g~-~~~~~~~~-~~~~~v~q~~ 755 (1230)
+..+|+|||+++++||+++|+|+||||||||+ ..+.. ... . ....+. .+... .......+ ...++..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ-FLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhh-hhcccCccccccccCCCceEEecCC
Confidence 35699999999999999999999999999995 44431 000 0 000000 00000 00000111 1223333333
Q ss_pred c--cCCCCCHH---HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000907 756 I--HSPYVTVY---ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVA 829 (1230)
Q Consensus 756 ~--~~~~ltv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqrl~ia~al~~ 829 (1230)
. ..|..+|. |...+...+. ......++ .+.++.+++.+ ..+.. +..||||||||++||++|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHh
Confidence 2 23444544 2222221111 11112222 46789999875 34544 45799999999999999999
Q ss_pred CC--CEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 830 NP--SIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 830 ~p--~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+| ++++|||||+|||+.++..+.+.|++++++|.|+|++||++.. + +..|+
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~ 207 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADH 207 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCE
Confidence 98 5999999999999999999999999987789999999999863 3 56666
No 420
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7e-25 Score=252.90 Aligned_cols=176 Identities=25% Similarity=0.354 Sum_probs=143.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++. .+|+|+++|.++.... .++.+|||+|++.+++.+||+||+.+.....+. ..
T Consensus 48 lk~L~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~----------~~ 114 (343)
T PRK11153 48 IRCINLLERP---TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT----------PK 114 (343)
T ss_pred HHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC----------CH
Confidence 4678887653 4799999999886432 246799999999999999999999997653210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +.++.++.+++.+||++..++.++ .|||||||||+|||||+.+|+||+||
T Consensus 115 ~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~iLlLD 165 (343)
T PRK11153 115 A------------------------EIKARVTELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALASNPKVLLCD 165 (343)
T ss_pred H------------------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 011236778999999988887664 69999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||+|||+.++..+++.|+++++..+.|+++ ++|...++.+++|+|++|++|++++.|+++++.
T Consensus 166 EPts~LD~~~~~~l~~~L~~l~~~~g~tiil-vtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 166 EATSALDPATTRSILELLKDINRELGLTIVL-ITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999987644555555 556667889999999999999999999998874
No 421
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.92 E-value=9.3e-25 Score=238.64 Aligned_cols=176 Identities=33% Similarity=0.546 Sum_probs=139.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|.++.+...+|+|.++|.++.....++.++||+|++.+++.+||+||+.|++........ ....
T Consensus 50 lk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~-------~~~~---- 118 (226)
T cd03234 50 LDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS-------SDAI---- 118 (226)
T ss_pred HHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc-------chHH----
Confidence 46778876532235899999999876444567899999999999999999999997653321100 0000
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHH-HHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDY-ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~-il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.....+. +++.+++.+..++.+ +.||||||||++||++|+.+|++++|||||+|
T Consensus 119 --------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~g 173 (226)
T cd03234 119 --------------------RKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173 (226)
T ss_pred --------------------HHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 0011333 788888877766554 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||+.++..+.+.|+++++ .+.|++++.|++..++.+.+|++++|++|+++++|
T Consensus 174 LD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 174 LDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999875 46788887777778999999999999999999876
No 422
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=2.7e-24 Score=208.94 Aligned_cols=188 Identities=24% Similarity=0.318 Sum_probs=156.5
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCc--cCC
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDI--HSP 759 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~--~~~ 759 (1230)
...+++.|||+++.|+.+||+|.||||||||.|+|+|..+| .+|+|.+||++... ..+.+.+-+++||+. +.|
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P--TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC--CCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 35689999999999999999999999999999999998775 48999999998643 233467889999985 556
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 760 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 760 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
.+.+.+-|... +++..+...+.+.+++.+.++..||-+. ++-. +.-||-||||||++||||+.+|+|++.||
T Consensus 103 Rl~iGqiLd~P--L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 103 RLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhHhcch--hhhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 66676666654 4555677788888889999999998643 3322 45699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...+||...+.++.+++-++.+ .|.+-|.++.+.. -|-+.-|+
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~ 219 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQ 219 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-Hhhhhccc
Confidence 9999999999999999989875 4999999998876 45566666
No 423
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=9.1e-25 Score=250.29 Aligned_cols=176 Identities=26% Similarity=0.314 Sum_probs=143.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|..+ ..+|+|+++|+++.... .++.++||+|++.+++.+||+||+.|+.+.+.. ...
T Consensus 13 l~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~----------~~~---- 75 (325)
T TIGR01187 13 LRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV----------PRA---- 75 (325)
T ss_pred HHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCC----------CHH----
Confidence 577888875 34899999999875432 246799999999999999999999998643210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++.+++.+||.+..|..+ +.|||||||||+|||||+.+|++++|||||+|
T Consensus 76 --------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~ 130 (325)
T TIGR01187 76 --------------------EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSA 130 (325)
T ss_pred --------------------HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 01123677899999988887665 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.|+++ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 131 LD~~~~~~l~~~l~~l~~~~g~tiii-vTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 131 LDKKLRDQMQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999987654566655 555667899999999999999999999998874
No 424
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.92 E-value=2.2e-25 Score=284.46 Aligned_cols=176 Identities=24% Similarity=0.307 Sum_probs=132.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|... ..+|+|++||.++++.. .|+.++||+|++.+|+ .||||||.++.. + . .. +.
T Consensus 522 lklL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~-~-----~------~~-~~ 584 (710)
T TIGR03796 522 AKLVAGLYQ---PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWDP-T-----I------PD-AD 584 (710)
T ss_pred HHHHhcCCC---CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCCC-C-----C------CH-HH
Confidence 356777665 34799999999987643 4789999999988775 699999987521 0 0 00 00
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
+.+.... + ...+.+. .|+++.||.||++| ++||||||||++|||||+++|+|++|||||
T Consensus 585 -------------i~~al~~---~-~l~~~i~---~lp~gl~t~i~e~G-~~LSGGQrQRiaLARall~~p~iliLDEpt 643 (710)
T TIGR03796 585 -------------LVRACKD---A-AIHDVIT---SRPGGYDAELAEGG-ANLSGGQRQRLEIARALVRNPSILILDEAT 643 (710)
T ss_pred -------------HHHHHHH---h-CCHHHHH---hCcCcccceeccCC-CCCCHHHHHHHHHHHHHhhCCCEEEEECcc
Confidence 0000000 0 0112222 38889999999766 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..|.+.|++ .++|+|+..|++ +. ...+|+|++|++|++++.|+++++.+
T Consensus 644 S~LD~~te~~i~~~l~~----~~~T~IiitHrl-~~-i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 644 SALDPETEKIIDDNLRR----RGCTCIIVAHRL-ST-IRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred ccCCHHHHHHHHHHHHh----cCCEEEEEecCH-HH-HHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999974 356766655554 44 45689999999999999999999865
No 425
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.92 E-value=2.9e-25 Score=282.23 Aligned_cols=177 Identities=24% Similarity=0.393 Sum_probs=135.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|... ..+|+|++||.|+++.. .|+.++||+|++.+|+ .||+|||.++..- .+.+ ..
T Consensus 509 klL~gl~~---p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~~------------~~~~-~i 571 (694)
T TIGR03375 509 KLLLGLYQ---PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAPY------------ADDE-EI 571 (694)
T ss_pred HHHhcCCC---CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCCC------------CCHH-HH
Confidence 55666654 35799999999987654 4689999999998776 5999999886320 0000 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+. . +.+ ...|.+. .|+++.||.||+.| .+||||||||++|||||+++|+|++||||||
T Consensus 572 ------------~~a-~---~~~-~l~~~i~---~lp~gl~T~i~e~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts 630 (694)
T TIGR03375 572 ------------LRA-A---ELA-GVTEFVR---RHPDGLDMQIGERG-RSLSGGQRQAVALARALLRDPPILLLDEPTS 630 (694)
T ss_pred ------------HHH-H---HHc-ChHHHHH---hCcccccceecCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 000 0 000 1123332 38899999999776 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..|++.|+++.+ ++|+++..|++ + ....+|+|++|++|+++++|+|+++.+
T Consensus 631 ~LD~~te~~i~~~l~~~~~--~~T~iiItHrl-~-~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 631 AMDNRSEERFKDRLKRWLA--GKTLVLVTHRT-S-LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred CCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-H-HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999987753 56776666555 3 457899999999999999999999865
No 426
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.92 E-value=2.6e-25 Score=277.94 Aligned_cols=179 Identities=26% Similarity=0.412 Sum_probs=135.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|..++ .+|+|++||.++++.. .++.++||+|++.+|+ .||+|||.++..-. + ... .
T Consensus 386 l~ll~gl~~p---~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~-----~------~~~-~ 449 (582)
T PRK11176 386 ANLLTRFYDI---DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYARTEQ-----Y------SRE-Q 449 (582)
T ss_pred HHHHHhccCC---CCceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCCCC-----C------CHH-H
Confidence 3566776543 4799999999987643 3678999999988776 69999998853100 0 000 0
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
+.+....+ -.+..++ .|+++.||.+|+.+ +.||||||||++|||||+++|+|++|||||
T Consensus 450 -------------i~~al~~~-----~l~~~i~--~lp~Gldt~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 450 -------------IEEAARMA-----YAMDFIN--KMDNGLDTVIGENG-VLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred -------------HHHHHHHh-----CcHHHHH--hcccccCceeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 00000000 0111222 28899999999765 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..+.+.|+++.+ ++|+|+..|++ +....||+|++|++|++++.|+++++.+
T Consensus 509 saLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 509 SALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred ccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988643 57777766655 4567799999999999999999999864
No 427
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.8e-25 Score=229.73 Aligned_cols=171 Identities=24% Similarity=0.367 Sum_probs=144.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
+|++||.... .+|.|.+||..+.+.. .+|.+|||.||--|||++||+-||.|+.....
T Consensus 41 in~IaGL~rP---deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~------------ 105 (352)
T COG4148 41 INMIAGLTRP---DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSM------------ 105 (352)
T ss_pred HHHHhccCCc---cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcccc------------
Confidence 3677887763 4799999998875432 25899999999999999999999999853210
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
...-|.+...||++|-.+- ....|||||||||+|||||++.|++|+|
T Consensus 106 ----------------------------~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLm 152 (352)
T COG4148 106 ----------------------------RAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLM 152 (352)
T ss_pred ----------------------------hHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeee
Confidence 1125778899999998884 4456999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||.|.||-....+++--|.++++..+-. |+-+.|-..|+..++|+|++|++|+|...|+.+++..
T Consensus 153 DEPLaSLD~~RK~EilpylERL~~e~~IP-IlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 153 DEPLASLDLPRKREILPYLERLRDEINIP-ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cCchhhcccchhhHHHHHHHHHHHhcCCC-EEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99999999999999999999999865544 5557777899999999999999999999999998753
No 428
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=4.6e-25 Score=274.92 Aligned_cols=201 Identities=17% Similarity=0.149 Sum_probs=130.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCe
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGY 737 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~ 737 (1230)
..|.++|+++++. ++.+|+|+|++|++||++||+|||||||||||++|+|....+ +..|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 3588899988773 346999999999999999999999999999999999863111 12355543222
Q ss_pred ec-----Ch------------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC---------------CCCHHHHH
Q 000907 738 PK-----NQ------------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS---------------EVNSKTRE 785 (1230)
Q Consensus 738 ~~-----~~------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~---------------~~~~~~~~ 785 (1230)
.. .. ...++.+++++|++.+... ++.++.........+. .......+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 10 00 0001123444443221110 1101000000000000 00001223
Q ss_pred HHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000907 786 MFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864 (1230)
Q Consensus 786 ~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~t 864 (1230)
+++.++++.+|+. +..++. +..||||||||++||++|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4566677777775 334444 3479999999999999999999999999999999999999999999875 689
Q ss_pred EEEEecCCCHHHHHHHhc
Q 000907 865 VVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 865 vi~~~H~~~~~i~~~fd~ 882 (1230)
||+++|+.. .+-+..|+
T Consensus 394 viivsHd~~-~l~~~~d~ 410 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTD 410 (718)
T ss_pred EEEEECCHH-HHHHhCCE
Confidence 999999965 34455666
No 429
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.3e-24 Score=252.59 Aligned_cols=176 Identities=22% Similarity=0.290 Sum_probs=142.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.++ ..+|+|++||.++.... .++.++||+|++.+++.+||+||+.|+.+.++..
T Consensus 71 Lr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~---------- 137 (400)
T PRK10070 71 VRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIN---------- 137 (400)
T ss_pred HHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCC----------
Confidence 467777765 34799999999876432 1357999999999999999999999986543210
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ ..+.++++++.+||.+..|..+ +.|||||||||+|||||+.+|+||+|
T Consensus 138 ~~~------------------------~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 138 AEE------------------------RREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred HHH------------------------HHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 0123677899999988887666 46999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||+|||+.++..+++.|+++.+..++|+|+ ++|..+++..++|+|++|++|++++.|+++++.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIi-vTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVF-ISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEE-EECCHHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999987644566555 556677899999999999999999999988764
No 430
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=1.1e-24 Score=247.70 Aligned_cols=175 Identities=27% Similarity=0.392 Sum_probs=144.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.++ ..+|+|.++|.++.... .++.+|||+|++.+++.+||+|||.|.+++.+.. ..
T Consensus 45 l~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~----------~~--- 108 (301)
T TIGR03522 45 MKIITGYLP---PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK----------GQ--- 108 (301)
T ss_pred HHHHhCCCC---CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC----------HH---
Confidence 467888765 34899999999875432 3467999999999999999999999877653210 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||.+..|+.++ .||||||||++||+||+++|++++|||||+
T Consensus 109 ---------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 109 ---------------------LLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred ---------------------HHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 011236779999999999887764 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.+...+++.|+++++ +.| |+.++|..+++.+++|+|++|++|++++.|+.+++.+
T Consensus 163 gLD~~~~~~l~~~l~~~~~--~~t-iii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGK--DKT-IILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999998853 455 5556667789999999999999999999999999865
No 431
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-24 Score=251.84 Aligned_cols=170 Identities=24% Similarity=0.379 Sum_probs=141.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|..+ ..+|+|+++|.++... ..++.++||+|+..+++.+||+||+.|+.+-.
T Consensus 41 l~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~------------- 104 (352)
T PRK11144 41 INAISGLTR---PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKS------------- 104 (352)
T ss_pred HHHHhCCCC---CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhh-------------
Confidence 467888765 3489999999887531 12568999999999999999999999863200
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
.++.++.+++.+||.+..|..++ .|||||||||+|||||+.+|++++|
T Consensus 105 ---------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~llLL 152 (352)
T PRK11144 105 ---------------------------MVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRVAIGRALLTAPELLLM 152 (352)
T ss_pred ---------------------------hHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 01236778999999988887664 6999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||||||+.++..+++.|+++++..+.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~l~~~~g~tii~-vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 153 DEPLASLDLPRKRELLPYLERLAREINIPILY-VSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE-EecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999987644555555 556668999999999999999999999999874
No 432
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=6.6e-25 Score=272.09 Aligned_cols=170 Identities=25% Similarity=0.380 Sum_probs=133.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|..+ ..+|+|++||.++++.. .|+.++||+|++.+|+ .|++|||.++..- .+.+
T Consensus 384 ~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~------------~~~~--- 444 (574)
T PRK11160 384 QLLTRAWD---PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAPN------------ASDE--- 444 (574)
T ss_pred HHHhcCCC---CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCCc------------cCHH---
Confidence 55666654 35799999999987654 4678999999988776 5999999986420 0000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCC------cccccccccCCccccCcccccchhHHHHHHhcCCceee
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDL------DVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALF 152 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL------~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILl 152 (1230)
.++..++..|| +++.||.||+.+ +.||||||||++|||||+++|+|++
T Consensus 445 -------------------------~i~~al~~~~l~~~i~~p~GldT~vge~g-~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 445 -------------------------ALIEVLQQVGLEKLLEDDKGLNAWLGEGG-RQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred -------------------------HHHHHHHHcCCHHHHcCccccCchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 01112222222 788999999765 4699999999999999999999999
Q ss_pred eeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 153 MDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 153 LDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||||+||+.++..|.+.|+++. .++|+|+..|++ +.+ ..+|+|++|++|++++.|+|+++.+
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL-TGL-EQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh-hHH-HhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999875 367777766665 455 5589999999999999999999864
No 433
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.6e-24 Score=214.84 Aligned_cols=168 Identities=20% Similarity=0.317 Sum_probs=139.4
Q ss_pred eeEEEEECCccCCCCcc----cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 14 ASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 14 ~~G~V~vnG~~~~~~~~----~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
.+|+|.+||.+++..-. |.-+||.|||+..|..|||+|||.-..+.+.... ..
T Consensus 57 d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~--------~~--------------- 113 (243)
T COG1137 57 DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDL--------KK--------------- 113 (243)
T ss_pred CCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcch--------hH---------------
Confidence 47999999999986532 3579999999999999999999987665432100 00
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
.+.+...|.+|++++|.|++|..-. .||||||||+-|||||+.+|+.++||||.+|+||.+-.+|.
T Consensus 114 ---------~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq 179 (243)
T COG1137 114 ---------AERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179 (243)
T ss_pred ---------HHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHH
Confidence 0112347899999999999997543 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+.++.+++ .|--++| +.|+--|....+||.+++++|++..+|+++++.+
T Consensus 180 ~iI~~L~~-rgiGvLI-TDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 180 RIIKHLKD-RGIGVLI-TDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHHHh-CCceEEE-ccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999986 3444444 5677789999999999999999999999998753
No 434
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.91 E-value=1.4e-24 Score=247.11 Aligned_cols=176 Identities=26% Similarity=0.334 Sum_probs=142.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.++. .+|+|.++|.++.... .++.+|||+|++.+++.+||+||+.+.+...+. ...
T Consensus 47 l~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~~~--- 110 (303)
T TIGR01288 47 ARMLLGMISP---DRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----------STR--- 110 (303)
T ss_pred HHHHhCCCCC---CceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC----------CHH---
Confidence 4678887653 4899999999875322 356799999999999999999999875543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++..++.++ .||||||||++||+||+.+|++++|||||+
T Consensus 111 ---------------------~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 111 ---------------------EIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred ---------------------HHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 001235678899999999888775 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.++..+++.|+++++ .|.|+++ ++|...++.+.+|+|++|++|++++.|+++++..
T Consensus 165 gLD~~~~~~l~~~l~~~~~-~g~til~-~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLA-RGKTILL-TTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999875 4555555 5566679999999999999999999999998754
No 435
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.8e-24 Score=238.46 Aligned_cols=179 Identities=25% Similarity=0.366 Sum_probs=140.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|..+ ..+|+|.++|.++.... .++.++||+|++.+++.+||+||+.++........+. ...
T Consensus 45 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~------~~~---- 111 (239)
T cd03296 45 LRLIAGLER---PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP------PEA---- 111 (239)
T ss_pred HHHHhCCCC---CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC------CHH----
Confidence 467888764 35899999999875432 2467999999999999999999999875432100000 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+..+.++.+++.+||.+..++.++ .|||||||||+||+||+.+|++++|||||+|
T Consensus 112 --------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP~~~ 166 (239)
T cd03296 112 --------------------EIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARALAVEPKVLLLDEPFGA 166 (239)
T ss_pred --------------------HHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 011235678999999887777664 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
||+.++..+.+.|+++++..++|+|++. |...++...+|++++|++|++++.|+++++
T Consensus 167 LD~~~~~~l~~~l~~~~~~~~~tvii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 167 LDAKVRKELRRWLRRLHDELHVTTVFVT-HDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999998764456666555 555788899999999999999999998876
No 436
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=2.5e-24 Score=289.96 Aligned_cols=173 Identities=27% Similarity=0.324 Sum_probs=131.3
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCH
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++ +.++|++|++.++ ..|+
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 346799999999999999999999999999999999998765 37998763 4689999998876 5799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+||+.|... ... ++.+++++..++.+ -.++.+|.. ...||||||||++|||||+.+|++++|
T Consensus 738 ~enI~~~~~------~~~----~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illL 806 (1560)
T PTZ00243 738 RGNILFFDE------EDA----ARLADAVRVSQLEADLAQLGGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLL 806 (1560)
T ss_pred HHHHHcCCh------hhH----HHHHHHHHHhhhHHHHHHhhccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999987421 111 11222333222211 112334443 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+.++..+++.+.....+|+|+|++||++.. .+..|+
T Consensus 807 DEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ 850 (1560)
T PTZ00243 807 DDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADY 850 (1560)
T ss_pred cCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCE
Confidence 99999999999998887432222358999999999863 355676
No 437
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=5.7e-25 Score=232.50 Aligned_cols=168 Identities=24% Similarity=0.342 Sum_probs=145.7
Q ss_pred ceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCc
Q 000907 13 KASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDA 85 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~ 85 (1230)
-..|+|+++|.++.... .++.++.|.|.-.|+|+.||.||..|+.++++.. +.|+
T Consensus 80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~----------~~er-------- 141 (386)
T COG4175 80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP----------KAER-------- 141 (386)
T ss_pred CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCC----------HHHH--------
Confidence 46899999999986543 2478999999999999999999999999887632 2222
Q ss_pred hhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHH
Q 000907 86 DIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 165 (1230)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa 165 (1230)
+++..+.|+..||..-++... ..||||+||||-+||||..+|+||++|||.|+|||--+
T Consensus 142 ----------------~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 142 ----------------EERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred ----------------HHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 224567899999999998655 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 166 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 166 ~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.++++-|.++.+..++| |+.|+|..+|.+...|||.+|.+|+++..|+++|++.
T Consensus 201 ~~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 201 TEMQDELLELQAKLKKT-IVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred HHHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 99999999998877666 5558899999999999999999999999999999864
No 438
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.9e-24 Score=241.90 Aligned_cols=176 Identities=24% Similarity=0.332 Sum_probs=141.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.++. .+|+|.++|.++.... .++.++||+|++.+++.+||+||+.+.....+. .
T Consensus 67 l~~L~Gl~~p---~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~ 133 (269)
T cd03294 67 LRCINRLIEP---TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV----------P 133 (269)
T ss_pred HHHHhcCCCC---CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCC----------C
Confidence 4678887753 4799999999875421 135799999999999999999999987543210 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ ..+.++.+++.+||.+..++.++ .||||||||++||+||+.+|+|++|
T Consensus 134 ~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 134 RAE------------------------REERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred HHH------------------------HHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 01235778999999988888775 5999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||+|||..++..+.+.|+++++..++|+++ ++|...++...+|++++|++|++++.|+++++.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii-~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVF-ITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999987644566555 555567889999999999999999999988764
No 439
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=7.3e-25 Score=232.34 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=121.8
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-------eEEEEEEECCeecChhcccceEEEEccCCccCCCCC
Q 000907 690 NGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-------YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 690 ~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-------~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 762 (1230)
+++++++++| +++|+||||||||||+++|+|...+. ...|++.++|.+......++.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999864321 12356777776654333457899999988765
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCCEeEEeC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELV----ANPSIIFMDE 838 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~----~~p~illlDE 838 (1230)
|. .. . .++++++++. .+..++. +..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~--~~-----~----~~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II-----S----QGDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE-----e----hhhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 0 1235666665 3334443 3579999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||+.....+.+.|+++++ +.|||++||++.. .+..|+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~--~~~~d~ 184 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT--MEAADR 184 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--Hhhcce
Confidence 9999999999999999999864 7899999999852 345565
No 440
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.6e-24 Score=235.90 Aligned_cols=175 Identities=29% Similarity=0.353 Sum_probs=140.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.++ ..+|+|.+||.++... ..++.++||+|++.+++.+||+||+.+..+..+. ...
T Consensus 43 l~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~--- 106 (220)
T cd03265 43 IKMLTTLLK---PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV----------PGA--- 106 (220)
T ss_pred HHHHhCCCC---CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCC----------CHH---
Confidence 467888764 3489999999886532 2246799999999999999999999987543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++..|+.++ .||||||||++||+||+.+|++++|||||+
T Consensus 107 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 107 ---------------------ERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred ---------------------HHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 011236778999999988887765 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+.++..+.+.|+++++..+.+++ .++|...++...+|++++|.+|++++.|+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi-~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTIL-LTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEE-EEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999998764355544 566667789999999999999999999987753
No 441
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.91 E-value=6.6e-25 Score=245.79 Aligned_cols=173 Identities=27% Similarity=0.401 Sum_probs=139.2
Q ss_pred ceeEEEEECCccCCCCcc---cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~~---~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|.|.+||.+++..+. -+.+||.||+=.||+ .||.|||. |+.. +.|.++
T Consensus 388 p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~~----------------------~~d~~k 441 (580)
T COG4618 388 PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFGE----------------------EADPEK 441 (580)
T ss_pred cCCCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hccc----------------------cCCHHH
Confidence 468999999999986543 378999999777776 69999994 4321 111111
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
..++.+....+|.|++ |++++||.||+.+ .+||||||||+++||||+++|.+++||||-|.||+.-+..+.
T Consensus 442 -----IieAA~lAgvHelIl~---lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~ 512 (580)
T COG4618 442 -----VIEAARLAGVHELILR---LPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALA 512 (580)
T ss_pred -----HHHHHHHcChHHHHHh---CcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHH
Confidence 1222333446777766 9999999999765 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFI 223 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~ 223 (1230)
+++.+..+ .|+|+|+..|.| .+....|+|++|++|++.-+|+.+|+.....
T Consensus 513 ~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 513 AAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 99998764 677777665554 5888889999999999999999999987653
No 442
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.91 E-value=4.9e-25 Score=279.37 Aligned_cols=175 Identities=22% Similarity=0.364 Sum_probs=128.9
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|..+ ..+|+|++||.|+++.. .++.++||+|++.+|. .||||||.++..-. + .+.
T Consensus 525 ~lL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~~------------~-~e~- 586 (711)
T TIGR00958 525 ALLQNLYQ---PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLTDT------------P-DEE- 586 (711)
T ss_pred HHHHhccC---CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCCCC------------C-HHH-
Confidence 45566554 35799999999987654 4678999999988776 69999999863200 0 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+.+....+ . ..+.+- .|+++.||.+|+.+ ++||||||||++|||||+++|+|++||||||
T Consensus 587 ------------i~~al~~a---~-l~~~i~---~lp~GldT~ige~G-~~LSGGQkQRlalARALl~~p~ILILDEpTS 646 (711)
T TIGR00958 587 ------------IMAAAKAA---N-AHDFIM---EFPNGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATS 646 (711)
T ss_pred ------------HHHHHHHc---C-CHHHHH---hCCCccCCcccCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEEcccc
Confidence 01111000 0 112222 27889999999765 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..|.+ .. ...++|+|+..|+ .+. .+.+|+|++|++|+++++|+|+++.+
T Consensus 647 aLD~~te~~i~~-~~---~~~~~TvIiItHr-l~~-i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 647 ALDAECEQLLQE-SR---SRASRTVLLIAHR-LST-VERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred ccCHHHHHHHHH-hh---ccCCCeEEEEecc-HHH-HHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999988 22 1235666655544 444 56689999999999999999999865
No 443
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.91 E-value=5.8e-25 Score=280.20 Aligned_cols=177 Identities=26% Similarity=0.373 Sum_probs=133.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|... -.+|+|++||.++++.. .|+.+|||+|++.+|+ .||+|||.++.+-. .+.++
T Consensus 518 klL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~~~-----------~~~~~-- 580 (708)
T TIGR01193 518 KLLVGFFQ---ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAKEN-----------VSQDE-- 580 (708)
T ss_pred HHHhccCC---CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCCCC-----------CCHHH--
Confidence 55666654 35799999999987543 4688999999988776 59999999863210 00000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+.+.. +.+ ...|.+. .|+++.||.||+.+ .+||||||||++|||||+++|+||+||||||
T Consensus 581 ------------i~~a~---~~a-~l~~~i~---~lp~gldt~i~e~G-~~LSgGQrQRialARall~~p~iliLDE~Ts 640 (708)
T TIGR01193 581 ------------IWAAC---EIA-EIKDDIE---NMPLGYQTELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTS 640 (708)
T ss_pred ------------HHHHH---HHh-CCHHHHH---hcccccCcEecCCC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccc
Confidence 00000 000 1122232 38899999999765 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..|++.|+++ .++|+|+..|++ + ....+|+|++|++|++++.|+++++.+
T Consensus 641 ~LD~~te~~i~~~L~~~---~~~T~IiitHr~-~-~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 641 NLDTITEKKIVNNLLNL---QDKTIIFVAHRL-S-VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred cCCHHHHHHHHHHHHHh---cCCEEEEEecch-H-HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999864 356666655554 4 457799999999999999999999865
No 444
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.91 E-value=2.6e-24 Score=236.49 Aligned_cols=174 Identities=20% Similarity=0.348 Sum_probs=139.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
||+|+|.++ ..+|+|.+||.+..... .++.++||+|++.+++.+||+||+.+....+.. ...
T Consensus 43 l~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~- 108 (232)
T cd03218 43 FYMIVGLVK---PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGL----------SKK- 108 (232)
T ss_pred HHHHhCCCC---CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCC----------CHH-
Confidence 467888765 34799999999875422 135699999999999999999999986532210 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
+..+.++.+++.+||.+..++.++ .||||||||++||+||+.+|++++||||
T Consensus 109 -----------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 109 -----------------------EREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred -----------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 011235778999999888887664 6999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|+|||+.++..+.+.|+++++ .+.|+++ ++|...++.+.+|++++|++|++++.|+.+++
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~-~~~tii~-~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKD-RGIGVLI-TDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999998875 4555555 55556789999999999999999999998775
No 445
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.91 E-value=2.6e-24 Score=237.15 Aligned_cols=184 Identities=22% Similarity=0.310 Sum_probs=140.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc----cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~----~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|+|.++ ..+|+|.++|.++..... ++.++||+|++.+++.+||+||+.++..........+ ..
T Consensus 43 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~----~~--- 112 (236)
T cd03219 43 FNLISGFLR---PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL----AR--- 112 (236)
T ss_pred HHHHcCCCC---CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccc----cc---
Confidence 467888765 347999999998764321 3469999999999999999999998764321000000 00
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
...+ .++..+.++++++.+||++..|+.++ .|||||||||+||+||+.+|++++||||
T Consensus 113 ------~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 113 ------ARRE-----------EREARERAEELLERVGLADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred ------cccc-----------HHHHHHHHHHHHHHcCccchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0000 00112246788999999887776654 6999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|+|||..++..+++.|+++++ .++|+|+ ++|...++.+.+|++++|++|++++.|+++++
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~-~~~tii~-vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 171 AAGLNPEETEELAELIRELRE-RGITVLL-VEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEE-EecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999875 4566555 55566788899999999999999999998876
No 446
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.2e-24 Score=233.63 Aligned_cols=170 Identities=24% Similarity=0.358 Sum_probs=135.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|.++ ..+|+|.++|.++.... .++.++||+|++.+++.+||+||+.++...... ...+
T Consensus 43 l~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~~--- 106 (213)
T cd03259 43 LRLIAGLER---PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV----------PKAE--- 106 (213)
T ss_pred HHHHhCCCC---CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC----------CHHH---
Confidence 467888765 34899999999875422 246799999999999999999999986542110 0000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.++.++.+++.+||.+..++.++ .||||||||++||+||+.+|++++|||||+|
T Consensus 107 ---------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 107 ---------------------IRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred ---------------------HHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 01235678999999988887664 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||+.++..+++.|+++++..++|+++ ++|...++.+.+|++++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIY-VTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999987544555555 556667889999999999999999876
No 447
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.91 E-value=2.9e-24 Score=249.11 Aligned_cols=174 Identities=22% Similarity=0.414 Sum_probs=141.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|..+ ..+|+|.++|.++... ..++.++||+|++.+++.+||+||+.|+.+...
T Consensus 40 l~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~------------ 104 (354)
T TIGR02142 40 IRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR------------ 104 (354)
T ss_pred HHHHhCCCC---CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC------------
Confidence 467888765 3479999999987532 124679999999999999999999998753210
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ .++.++++++.+||.+..|..++ .|||||||||+|||||+.+|++|+|
T Consensus 105 ~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRvalAraL~~~p~lllL 155 (354)
T TIGR02142 105 PSE------------------------RRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAIGRALLSSPRLLLM 155 (354)
T ss_pred hhH------------------------HHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 000 01236778999999988887664 6999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||+|||+.++..+++.|+++++..+.|+++ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 156 DEPts~LD~~~~~~l~~~L~~l~~~~g~tiii-vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 156 DEPLAALDDPRKYEILPYLERLHAEFGIPILY-VSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 99999999999999999999987644556555 555667899999999999999999999998874
No 448
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.91 E-value=3.1e-24 Score=247.46 Aligned_cols=176 Identities=24% Similarity=0.300 Sum_probs=141.7
Q ss_pred CccccCCcCCCCceeEEEEECCc----cCCCCc------c-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGH----DMHEFV------P-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDML 69 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~----~~~~~~------~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~ 69 (1230)
|++|+|.++ ..+|+|+++|. ++.... . ++.++||+|+..+++.+||+||+.|+....+.
T Consensus 67 lr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~------- 136 (382)
T TIGR03415 67 LRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGM------- 136 (382)
T ss_pred HHHHhCCCC---CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCC-------
Confidence 467888765 35799999996 332211 1 25799999999999999999999998653321
Q ss_pred hhhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCc
Q 000907 70 VELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAH 149 (1230)
Q Consensus 70 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ 149 (1230)
...+ .++.++++++.+||++..|..++ .|||||||||+|||||+.+|+
T Consensus 137 ---~~~~------------------------~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 137 ---PEAE------------------------RRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred ---CHHH------------------------HHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 0000 11236778999999988887664 599999999999999999999
Q ss_pred eeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 150 ALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 150 ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+|||||||||+.++.++++.|+++.+..++|+++ ++|..+++..++|+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~-iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIF-VSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999987644555555 566678999999999999999999999998874
No 449
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.91 E-value=3.3e-24 Score=232.43 Aligned_cols=170 Identities=25% Similarity=0.386 Sum_probs=136.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|.++ ..+|+|.++|.++.... .++.++||+|++.+++.+||+||+.++.+.... ...
T Consensus 43 l~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~---- 105 (213)
T cd03301 43 LRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV----------PKD---- 105 (213)
T ss_pred HHHHhCCCC---CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC----------CHH----
Confidence 467888764 34899999999875432 245799999999999999999999987543210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+..+.++.+++.+||.+..+..++ .||||||||++||++|+.+|++++|||||+|
T Consensus 106 --------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 106 --------------------EIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred --------------------HHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 011236778999999988887664 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||+.++..+++.|+++++..+.|++++. |...++.+.+|+|++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~s-H~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVT-HDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999998764466666655 4457888999999999999999886
No 450
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.8e-24 Score=236.26 Aligned_cols=175 Identities=27% Similarity=0.361 Sum_probs=140.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++. .+|+|.++|+++.... .++.++||+|++.+++.+||+||+.+....+.. ..
T Consensus 48 l~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~----------~~ 114 (233)
T cd03258 48 IRCINGLERP---TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV----------PK 114 (233)
T ss_pred HHHHhCCCCC---CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCC----------CH
Confidence 4678888753 5799999999876431 246799999999999999999999987543210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. .....++.+++.+||++..+..+ +.||||||||++||++|+.+|++++||
T Consensus 115 ~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLD 165 (233)
T cd03258 115 A------------------------EIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCD 165 (233)
T ss_pred H------------------------HHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 0 00123577899999988877655 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+|||+.++..+.+.|+++++..+.|++++. |...++...+|++++|++|++++.|+.+++
T Consensus 166 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 166 EATSALDPETTQSILALLRDINRELGLTIVLIT-HEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999998764455655544 556788899999999999999999998775
No 451
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.1e-24 Score=241.21 Aligned_cols=176 Identities=25% Similarity=0.363 Sum_probs=137.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-----cccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-----~~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
|++|+|.+.. .+|+|+++|.++... ..++.+|||+|++. .+...||+||+.|+....+. ..
T Consensus 50 l~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~----------~~ 116 (287)
T PRK13637 50 IQHLNGLLKP---TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL----------SE 116 (287)
T ss_pred HHHHhcCCCC---CccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCC----------CH
Confidence 4677777653 489999999998642 23468999999862 34457999999986542210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc--ccccccccCCccccCcccccchhHHHHHHhcCCceee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD--VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALF 152 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~--~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILl 152 (1230)
++..+.++.+++.+||. +..|+.+ +.||||||||++||+||+.+|+||+
T Consensus 117 ------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgGq~qrv~iAraL~~~P~lll 167 (287)
T PRK13637 117 ------------------------EEIENRVKRAMNIVGLDYEDYKDKSP-----FELSGGQKRRVAIAGVVAMEPKILI 167 (287)
T ss_pred ------------------------HHHHHHHHHHHHHcCCCchhhccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 01122467899999997 5566554 4699999999999999999999999
Q ss_pred eeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 153 MDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 153 LDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||||+|||+.++..+++.|+++++..+.|+++ ++|...++...+|+|++|++|++++.|+.+++.
T Consensus 168 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~-vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIIL-VSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999987644555555 556677888999999999999999999998874
No 452
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.4e-24 Score=233.33 Aligned_cols=171 Identities=25% Similarity=0.342 Sum_probs=137.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|.++ ..+|+|.++|.++.. .++.++||+|++.+++.+||+||+.++...++. ...+
T Consensus 47 l~~l~Gl~~---~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~~~~---- 107 (220)
T cd03293 47 LRIIAGLER---PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGV----------PKAE---- 107 (220)
T ss_pred HHHHhCCCC---CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCC----------CHHH----
Confidence 467888764 348999999998753 356799999999999999999999987543210 0000
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
..+.++.+++.+||.+..+..++ .||||||||++||+||+.+|++++|||||+||
T Consensus 108 --------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 108 --------------------ARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred --------------------HHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 01236778999999887777664 59999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEec--CCeEEEEcChh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVS--DGQIVYQGPLE 216 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~--~G~vv~~G~~~ 216 (1230)
|+.++..+++.|+++.+..++|+++ ++|...++...+|++++|+ +|++++.++++
T Consensus 163 D~~~~~~~~~~l~~~~~~~~~tiii-~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 163 DALTREQLQEELLDIWRETGKTVLL-VTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999886544566555 4555678889999999999 79999998865
No 453
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.91 E-value=2.1e-24 Score=236.23 Aligned_cols=177 Identities=20% Similarity=0.292 Sum_probs=136.7
Q ss_pred CccccCCcCC--CCceeEEEEECCccCCCCc-----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDS--SLKASGKVTYNGHDMHEFV-----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~--~~~~~G~V~vnG~~~~~~~-----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|...+ ....+|+|+++|.++.... .++.++||+|++.++ .+||+||+.++....+.. .
T Consensus 43 l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~---------~ 112 (227)
T cd03260 43 LRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIK---------L 112 (227)
T ss_pred HHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCC---------c
Confidence 4678887621 0145899999999875422 246799999998888 799999999875432100 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
.. +..+.++.+++.+||.+..+..+. .+.||||||||++||+||+.+|++++|
T Consensus 113 ~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llll 165 (227)
T cd03260 113 KE------------------------ELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLL 165 (227)
T ss_pred HH------------------------HHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 001235678999999887766531 246999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhh
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 217 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~ 217 (1230)
||||+|||+.++..+++.|+++++ . .| ++.++|...++...+|++++|++|++++.|++++
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~~~~-~-~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 166 DEPTSALDPISTAKIEELIAELKK-E-YT-IVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhh-C-cE-EEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999875 2 45 4445566678899999999999999999998765
No 454
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.7e-24 Score=236.81 Aligned_cols=184 Identities=23% Similarity=0.299 Sum_probs=140.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++ ..+|+|++||.++.... .++.++||+|++.+++.+||+||+.++..... ...+......
T Consensus 44 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~- 117 (241)
T cd03256 44 LRCLNGLVE---PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR--STWRSLFGLF- 117 (241)
T ss_pred HHHHhCCcC---CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc--hhhhhhcccC-
Confidence 467888765 34799999999876432 24679999999999999999999987642100 0000000000
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
.+...+.++.+++.+||.+..++.+ +.|||||||||+||+||+.+|+|++||
T Consensus 118 -----------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllD 169 (241)
T cd03256 118 -----------------------PKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILAD 169 (241)
T ss_pred -----------------------cHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0001123567899999988777655 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||+|||+.+...+.+.|+++++..++|+++ ++|..+++...+|++++|++|++++.|+.+++.
T Consensus 170 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 170 EPVASLDPASSRQVMDLLKRINREEGITVIV-SLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999987644556555 556667888999999999999999999988763
No 455
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.91 E-value=4.5e-24 Score=244.25 Aligned_cols=183 Identities=22% Similarity=0.266 Sum_probs=143.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc------c-ceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP------Q-RTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVE 71 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~------~-~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~ 71 (1230)
+++|+|.++.....+|+|.++|.++..... + +.++||+|++ .+.+.+||.|++.+.......
T Consensus 59 ~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~--------- 129 (330)
T PRK09473 59 AFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG--------- 129 (330)
T ss_pred HHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcC---------
Confidence 467888876432358999999999864321 2 4799999997 688999999999876433210
Q ss_pred hhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCcee
Q 000907 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHAL 151 (1230)
Q Consensus 72 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~IL 151 (1230)
.... +..+.+..+++.+||++..++ ++ ...+.|||||||||+||+||+.+|+++
T Consensus 130 ~~~~------------------------~~~~~~~~~L~~vgL~~~~~~-~~-~~p~~LSgG~~QRv~IArAL~~~P~ll 183 (330)
T PRK09473 130 MSKA------------------------EAFEESVRMLDAVKMPEARKR-MK-MYPHEFSGGMRQRVMIAMALLCRPKLL 183 (330)
T ss_pred CCHH------------------------HHHHHHHHHHHHcCCCChHHH-hc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0000 111246778999999865433 32 455789999999999999999999999
Q ss_pred eeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 152 FMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 152 lLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
++||||||||..++.+|++.|+++.+..+. +++.|+|....+...+|+|++|++|++++.|+.+++.
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~-til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKREFNT-AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999764444 5555777778899999999999999999999998874
No 456
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=8.5e-24 Score=269.02 Aligned_cols=187 Identities=24% Similarity=0.387 Sum_probs=152.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|.+++.+.. +....|+|||++|++|+++||+|+-|||||+||.+|.|..+ ..+|++.++|.
T Consensus 517 ~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS- 583 (1381)
T ss_pred ceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe-
Confidence 358888988876421 22348999999999999999999999999999999999766 36899999984
Q ss_pred cChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCC
Q 000907 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPGVN 811 (1230)
Q Consensus 739 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~ 811 (1230)
++||+|.+.++. .|||||+.|+.. . .+++-+++++...|.+ ...|.+|+.|+
T Consensus 584 ---------iaYv~Q~pWI~n-gTvreNILFG~~------~----d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi- 642 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWIQN-GTVRENILFGSP------Y----DEERYDKVIKACALKKDLEILPFGDLTEIGERGI- 642 (1381)
T ss_pred ---------EEEeccccHhhC-CcHHHhhhcCcc------c----cHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-
Confidence 799999998765 699999999632 1 2345677888777654 33466776665
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||||||+++|||+-+|.+|.+||.|.|++|++..+.+.+ .++.+ -+++|+|++|||. +.....|.
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql--~~L~~ad~ 711 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQL--QFLPHADQ 711 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCch--hhhhhCCE
Confidence 599999999999999999999999999999999999999886 55333 4689999999965 45566776
No 457
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.91 E-value=4.5e-24 Score=244.10 Aligned_cols=178 Identities=23% Similarity=0.260 Sum_probs=141.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVEL 72 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~ 72 (1230)
+++|+|.+.. .+|+|+++|.++.+.. .++.++||+|++ .++|.+||+||+.+..+..... .
T Consensus 64 lk~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~--------~ 132 (331)
T PRK15079 64 ARAIIGLVKA---TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPK--------L 132 (331)
T ss_pred HHHHHCCCCC---CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccC--------C
Confidence 4678887753 4899999999986432 246799999997 6889999999999865421100 0
Q ss_pred hHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCcee
Q 000907 73 SRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHAL 151 (1230)
Q Consensus 73 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~IL 151 (1230)
... +.++.++++++.+||. +..++.. ..|||||||||+||+||+.+|++|
T Consensus 133 ~~~------------------------~~~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~QRv~iArAL~~~P~ll 183 (331)
T PRK15079 133 SRQ------------------------EVKDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQRIGIARALILEPKLI 183 (331)
T ss_pred CHH------------------------HHHHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 000 1122467789999994 4556544 569999999999999999999999
Q ss_pred eeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 152 FMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 152 lLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
++||||||||..++.+|++.|+++.+..+. +++.++|....+...+|+|++|++|++++.|+.+++.
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~~~-til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 184 ICDEPVSALDVSIQAQVVNLLQQLQREMGL-SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999998764444 5556778888999999999999999999999998874
No 458
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=5.1e-24 Score=220.48 Aligned_cols=189 Identities=23% Similarity=0.337 Sum_probs=152.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc----cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~----~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
+|+|+|..+. .+|+|.++|++++.... +.-++--.|...+|+.|||.||+.-++..+.. +.......+-
T Consensus 47 fNlitG~~~P---~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~---~~~~l~~~~~- 119 (250)
T COG0411 47 FNLITGFYKP---SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG---LSGLLGRPRA- 119 (250)
T ss_pred eeeecccccC---CCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhh---hhhhhccccc-
Confidence 3677777653 47999999999986543 35577778999999999999999998765421 1000000000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
..+.+++.+....+|+.+||.+.+|+..|+ ||+||||||.|||||+++|++|+||||
T Consensus 120 ------------------~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEP 176 (250)
T COG0411 120 ------------------RKEEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEP 176 (250)
T ss_pred ------------------hhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCc
Confidence 011223344567899999999999999874 999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.+||.+.-+.++.+.++++.+ .++++|+.|.|.++-+..++|||+||+.|+++..|+++++.+
T Consensus 177 aAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 177 AAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999986 345677789999999999999999999999999999999753
No 459
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.6e-24 Score=240.51 Aligned_cols=175 Identities=21% Similarity=0.282 Sum_probs=137.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVE 71 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~ 71 (1230)
||+|+|.+. ..+|+|.++|+++... ..++.+|||+|++ .++ ..||+||+.|+....+.
T Consensus 50 l~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~--------- 116 (290)
T PRK13634 50 LQHLNGLLQ---PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGV--------- 116 (290)
T ss_pred HHHHhcCCC---CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCC---------
Confidence 467777765 3479999999987521 1246799999985 344 57999999987542210
Q ss_pred hhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 72 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
... +..+.++.+++.+||. +..++.+ +.|||||||||+||++|+.+|+|
T Consensus 117 -~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~l 166 (290)
T PRK13634 117 -SEE------------------------DAKQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIAGVLAMEPEV 166 (290)
T ss_pred -CHH------------------------HHHHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCE
Confidence 000 0112467899999997 5667655 46999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|+|||||+|||+.+...+++.|+++++..|.|+++ ++|...++...+|+|++|++|++++.|+.+++.
T Consensus 167 lllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tvii-itHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 167 LVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL-VTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999987644555554 556677899999999999999999999988763
No 460
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4e-24 Score=241.44 Aligned_cols=191 Identities=23% Similarity=0.313 Sum_probs=144.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVE 71 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~ 71 (1230)
||+|+|.+. ..+|+|+++|.++... ..++.+|||+|++ .+++ .||.||+.|+.+..+.
T Consensus 49 l~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~--------- 115 (288)
T PRK13643 49 LQHLNGLLQ---PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGI--------- 115 (288)
T ss_pred HHHHhcCCC---CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCC---------
Confidence 467788765 3489999999987521 1346899999985 4555 6999999997643210
Q ss_pred hhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 72 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
... +..+.++.+++.+||. +..+..+ +.||||||||++||++|+.+|+|
T Consensus 116 -~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGqkqrvaiA~aL~~~p~i 165 (288)
T PRK13643 116 -PKE------------------------KAEKIAAEKLEMVGLADEFWEKSP-----FELSGGQMRRVAIAGILAMEPEV 165 (288)
T ss_pred -CHH------------------------HHHHHHHHHHHHcCCChhhccCCc-----ccCCHHHHHHHHHHHHHHhCCCE
Confidence 000 0122467789999996 4556544 56999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH---HHHhcCC
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ---FFISMGF 227 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~---~f~~~G~ 227 (1230)
++|||||+|||+.++..+.+.|+++++ .+.|+++ ++|...++...+|+|++|++|++++.|+++++.+ .+...|+
T Consensus 166 llLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~-vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 243 (288)
T PRK13643 166 LVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVL-VTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHEL 243 (288)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEE-EecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCC
Confidence 999999999999999999999999875 3555555 5566688889999999999999999999988742 2445566
Q ss_pred CCCCCCCch
Q 000907 228 KCPKRKGIA 236 (1230)
Q Consensus 228 ~~p~~~n~a 236 (1230)
.+|.....+
T Consensus 244 ~~p~~~~~~ 252 (288)
T PRK13643 244 GVPKATHFA 252 (288)
T ss_pred CCChHHHHH
Confidence 655543333
No 461
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.4e-24 Score=235.21 Aligned_cols=176 Identities=25% Similarity=0.349 Sum_probs=139.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
|++|+|..+ ..+|+|.+||.++.... .++.++||+|++.+++.+||+||+.++.+..... ..
T Consensus 44 l~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~-- 108 (242)
T cd03295 44 MKMINRLIE---PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----------KE-- 108 (242)
T ss_pred HHHHhcCCC---CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCC----------HH--
Confidence 467888765 34799999999875422 2467999999999999999999999875432100 00
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcc--cccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV--CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~--~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
+..+.++++++.+||++ ..++.+ +.|||||||||+||+||+.+|++++|||
T Consensus 109 ----------------------~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 161 (242)
T cd03295 109 ----------------------KIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDE 161 (242)
T ss_pred ----------------------HHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 01123567899999985 555544 5699999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+|||+.++..+.+.|+++++..++|+|++. |...++...+|+|++|++|++++.|+++++.
T Consensus 162 Pt~~LD~~~~~~l~~~L~~~~~~~g~tvii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVT-HDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999998764356655544 5556888999999999999999999987763
No 462
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.6e-24 Score=241.86 Aligned_cols=174 Identities=20% Similarity=0.327 Sum_probs=134.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------------------cccceEEEecccc--cccCCCCHHHHHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------------------VPQRTAAYISQHD--IHIGEMTVRETLAFSARC 59 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------------------~~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l 59 (1230)
+|+|+|..+ ..+|+|+++|.++.+. ..++.++||+|++ .+++ .||+||+.|+...
T Consensus 69 l~~L~Gl~~---p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~ 144 (320)
T PRK13631 69 VTHFNGLIK---SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVA 144 (320)
T ss_pred HHHHhCCCC---CCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHh
Confidence 467777765 3489999999887532 1246899999986 4565 5999999987532
Q ss_pred cCCCCccchhhhhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchh
Q 000907 60 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRV 138 (1230)
Q Consensus 60 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRv 138 (1230)
... +.. +..+.++.+++.+||+ +..+.. .+.|||||||||
T Consensus 145 ~~~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqRv 185 (320)
T PRK13631 145 LGV----------KKS------------------------EAKKLAKFYLNKMGLDDSYLERS-----PFGLSGGQKRRV 185 (320)
T ss_pred cCC----------CHH------------------------HHHHHHHHHHHHcCCChhHhcCC-----cccCCHHHHHHH
Confidence 110 000 0112456789999997 445543 356999999999
Q ss_pred HHHHHHhcCCceeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 139 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 139 sIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
+|||||+.+|+||+|||||+|||+.++..+++.|+++++ .++|++ .++|..+++...+|+|++|++|++++.|+++++
T Consensus 186 aiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~Tii-ivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 263 (320)
T PRK13631 186 AIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVF-VITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263 (320)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEE-EEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998865 355544 456667788899999999999999999999876
Q ss_pred H
Q 000907 219 E 219 (1230)
Q Consensus 219 ~ 219 (1230)
.
T Consensus 264 ~ 264 (320)
T PRK13631 264 F 264 (320)
T ss_pred h
Confidence 3
No 463
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.9e-24 Score=242.92 Aligned_cols=181 Identities=18% Similarity=0.241 Sum_probs=139.4
Q ss_pred CccccCCcCC--CCceeEEEEECCccCCCC-----cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDS--SLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~--~~~~~G~V~vnG~~~~~~-----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
|++|+|.... +...+|+|.++|.++... ..++.++||+|++++++ .||+|||.|+...... .
T Consensus 125 l~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~----------~ 193 (329)
T PRK14257 125 LRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGI----------N 193 (329)
T ss_pred HHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCC----------C
Confidence 3566665531 113489999999998631 23578999999998774 8999999987543210 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+. .++.++..++..+|.+..++.++.. +.+|||||||||+|||||+.+|+|++|
T Consensus 194 ~~~~-----------------------~~~~~~~~l~~~~L~~~l~~~~~~~-~~~LSgGqkqRl~LARAl~~~p~IlLL 249 (329)
T PRK14257 194 DRKI-----------------------LEKIVEKSLKSAALWDEVKDDLDKA-GNALSGGQQQRLCIARAIALEPEVLLM 249 (329)
T ss_pred hHHH-----------------------HHHHHHHHHHHcCCcchhhhhhhCC-cccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0000 0123456778888876667777754 457999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||||||+.+...+.+.|+++.+ ++ +++.++|...++.+.+|+|++|++|++++.|+++++.
T Consensus 250 DEPts~LD~~~~~~i~~~i~~l~~--~~-Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 250 DEPTSALDPIATAKIEELILELKK--KY-SIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc--CC-EEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999998764 44 4555667778888989999999999999999999874
No 464
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.90 E-value=4.5e-24 Score=232.55 Aligned_cols=173 Identities=27% Similarity=0.419 Sum_probs=138.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|..+ ..+|+|+++|.++... ..++.++||+|++.+++.+||+||+.+..+..+.. ..+
T Consensus 45 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~-- 109 (220)
T cd03263 45 LKMLTGELR---PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP----------KSE-- 109 (220)
T ss_pred HHHHhCCCC---CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC----------HHH--
Confidence 467788764 3589999999987532 23467999999999999999999999865432100 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
..+.++.+++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+
T Consensus 110 ----------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~ 162 (220)
T cd03263 110 ----------------------IKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTS 162 (220)
T ss_pred ----------------------HHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 01235678999999988887764 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+.+...+.+.|+++++ +.|++ .++|....+...+|++++|++|++++.|+++++
T Consensus 163 ~LD~~~~~~l~~~l~~~~~--~~tii-~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 163 GLDPASRRAIWDLILEVRK--GRSII-LTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCHHHHHHHHHHHHHHhc--CCEEE-EEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999998864 45544 455666788889999999999999999998764
No 465
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.8e-24 Score=230.48 Aligned_cols=168 Identities=21% Similarity=0.336 Sum_probs=135.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
|++|+|.++ ..+|+|.+||+++.. ..++.++||+|++.+++.+||+||+.+....++.. ..
T Consensus 43 l~~l~G~~~---~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~----- 103 (210)
T cd03269 43 IRMILGIIL---PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK----------KE----- 103 (210)
T ss_pred HHHHhCCCC---CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC----------hH-----
Confidence 467888765 348999999998754 33568999999999999999999999865432100 00
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
+..+.++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+||
T Consensus 104 -------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 104 -------------------EARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred -------------------HHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 01123677899999998888765 469999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
|+.+...+.+.|+++++ .++|+++ ++|...++.+.+|++++|++|++++.|
T Consensus 160 D~~~~~~~~~~l~~~~~-~~~tii~-~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 160 DPVNVELLKDVIRELAR-AGKTVIL-STHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEE-ECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999998875 3555554 556667888999999999999998865
No 466
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.90 E-value=4.7e-24 Score=247.97 Aligned_cols=178 Identities=22% Similarity=0.354 Sum_probs=142.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
||+|+|.++ -.+|+|+++|+++.... .++.+|||+|++.+++.+||+||+.++..-.. .++... .
T Consensus 46 Lk~LaGll~---p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~--~~~~~~---~---- 113 (402)
T PRK09536 46 LRAINGTLT---PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR--SRFDTW---T---- 113 (402)
T ss_pred HHHHhcCCC---CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc--ccccCC---C----
Confidence 577888775 34899999999886532 34679999999999899999999998642100 000000 0
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
++.++.++.+++.+||.+..|+.+ +.||||||||+.|||||+++|+||+|||||
T Consensus 114 ---------------------~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPt 167 (402)
T PRK09536 114 ---------------------ETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPT 167 (402)
T ss_pred ---------------------HHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 001234788999999998888766 469999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
+|||+.+..++++.|+++++ .+.|+++ +.|..+++...+|++++|++|++++.|+++++
T Consensus 168 sgLD~~~~~~l~~lL~~l~~-~g~TIIi-vsHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 168 ASLDINHQVRTLELVRRLVD-DGKTAVA-AIHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCEEEE-EECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999986 4555555 55667899999999999999999999999875
No 467
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.90 E-value=6.1e-24 Score=231.98 Aligned_cols=173 Identities=19% Similarity=0.332 Sum_probs=136.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|+|..+ ..+|+|+++|.++.... .++.++|++|++.+++.+||+||+.++..... . .+
T Consensus 43 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~----------~~ 107 (222)
T cd03224 43 LKTIMGLLP---PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR--R----------AK 107 (222)
T ss_pred HHHHhCCCC---CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--c----------hh
Confidence 467888765 34799999998875432 24569999999999999999999998754221 0 00
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHc-CCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVL-DLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l-gL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
.+..++.+++.+ +|++..|+.+ +.||||||||++|||||+.+|++++|||
T Consensus 108 ------------------------~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 108 ------------------------RKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred ------------------------HHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 011244566666 4777667655 4599999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+|||+.++..+++.|+++++ .+.|+++ ++|...++...+|++++|++|++++.|+.+++.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRD-EGVTILL-VEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999875 4555555 555667889999999999999999999987653
No 468
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.8e-24 Score=230.63 Aligned_cols=168 Identities=27% Similarity=0.447 Sum_probs=135.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|++|+|.++. .+|+|.+||.++.... .++.++||+|++.+++.+||+||+.+....+.. ...
T Consensus 42 l~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~--- 105 (211)
T cd03264 42 MRILATLTPP---SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI----------PSK--- 105 (211)
T ss_pred HHHHhCCCCC---CccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCC----------CHH---
Confidence 4678887653 4899999998875432 246799999999999999999999986543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++..|+.++ .||||||||++||+||+.+|++++|||||+
T Consensus 106 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 106 ---------------------EVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred ---------------------HHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 001236778999999988887664 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
|||..+...+.+.|+++++ +. +++.++|...++.+.+|++++|++|++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~--~~-tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE--DR-IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC--CC-EEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999998864 44 4555667777888999999999999999876
No 469
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.90 E-value=5.9e-24 Score=229.38 Aligned_cols=165 Identities=24% Similarity=0.348 Sum_probs=133.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|.++ ..+|+|.+||.++... ..++.++||+|++.+++.+||+||+.+.......
T Consensus 43 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------------- 102 (208)
T cd03268 43 MKIILGLIK---PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI----------------- 102 (208)
T ss_pred HHHHhCCcC---CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC-----------------
Confidence 467888765 3589999999987532 2246799999999999999999999986532110
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.++.++.+++.+||.+..++.++ .|||||||||+||++|+.+|++++|||||+|
T Consensus 103 ---------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 103 ---------------------RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred ---------------------cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 01135678899999888877654 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||+.+...+.+.|+++++ .++|+++ ++|...++...+|++++|++|++++.|
T Consensus 157 LD~~~~~~l~~~l~~~~~-~~~tii~-~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 157 LDPDGIKELRELILSLRD-QGITVLI-SSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEE-EcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999998875 4566555 556667888899999999999999876
No 470
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.90 E-value=4e-24 Score=232.19 Aligned_cols=165 Identities=24% Similarity=0.350 Sum_probs=131.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++. .+|+|.+||.++.... .++.++|++|++.+++.+||+||+.++.+..+. ..
T Consensus 46 l~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------~~ 112 (216)
T TIGR00960 46 LKLILGIEKP---TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV----------PP 112 (216)
T ss_pred HHHHhCCCCC---CceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCC----------CH
Confidence 4678887653 4799999999875321 346799999999999999999999987543210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +.++.++.+++.+||++..+..++ .|||||||||+||+||+.+|++++||
T Consensus 113 ~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllD 163 (216)
T TIGR00960 113 R------------------------DANERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVAIARAIVHKPPLLLAD 163 (216)
T ss_pred H------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0 001236778999999988887664 59999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 209 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~v 209 (1230)
|||+|||+.++..+.+.|+++++ .+.|+++ ++|..+++...+|++++|++|++
T Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~-~~~tii~-vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 164 EPTGNLDPELSRDIMRLFEEFNR-RGTTVLV-ATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999865 3555555 55666788899999999999974
No 471
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.90 E-value=4.5e-24 Score=232.21 Aligned_cols=169 Identities=28% Similarity=0.406 Sum_probs=135.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|..+. .+|+|.++|+++... ..++.++||+|++.+++.+||+||+.+..+..+. ...
T Consensus 48 l~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------~~~--- 111 (218)
T cd03266 48 LRMLAGLLEP---DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL----------KGD--- 111 (218)
T ss_pred HHHHhCCcCC---CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC----------CHH---
Confidence 4678887653 489999999987642 2346799999999999999999999986543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++++++.+||.+..+..++ .||||||||++||+||+.+|++++|||||+
T Consensus 112 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPt~ 165 (218)
T cd03266 112 ---------------------ELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTT 165 (218)
T ss_pred ---------------------HHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 011246779999999888876654 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
|||+.+...+.+.|+++++ .++|+|+ ++|...++...+|++++|++|++++.|
T Consensus 166 ~LD~~~~~~l~~~l~~~~~-~~~tii~-~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 166 GLDVMATRALREFIRQLRA-LGKCILF-STHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999864 4556555 555567889999999999999998865
No 472
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.90 E-value=8.3e-24 Score=234.49 Aligned_cols=177 Identities=23% Similarity=0.338 Sum_probs=137.9
Q ss_pred CccccCCcCCC--CceeEEEEECCccCCCC-----cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSS--LKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~--~~~~G~V~vnG~~~~~~-----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.+.+. ...+|+|+++|.++... ..++.++||+|++.+++ +||+||+.+..+.++. . .
T Consensus 44 l~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~---~------~ 113 (247)
T TIGR00972 44 LRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGI---K------D 113 (247)
T ss_pred HHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCC---C------C
Confidence 46788876531 23489999999987541 12467999999998888 9999999987543210 0 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc----ccccccccCCccccCcccccchhHHHHHHhcCCc
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD----VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAH 149 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~----~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ 149 (1230)
.. +..+.++.+++.+||. +..++.+ +.||||||||++|||||+.+|+
T Consensus 114 ~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~ 164 (247)
T TIGR00972 114 KK------------------------ELDEIVEESLKKAALWDEVKDRLHDSA-----LGLSGGQQQRLCIARALAVEPE 164 (247)
T ss_pred HH------------------------HHHHHHHHHHHHcCCCcchhhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCC
Confidence 00 0112356788999997 5566544 4699999999999999999999
Q ss_pred eeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 150 ALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 150 ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
+++|||||+|||+.+...+++.|+++++ +.|+ +.++|...++...+|++++|++|++++.|+++++.
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~~~~~--~~ti-iivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 165 VLLLDEPTSALDPIATGKIEELIQELKK--KYTI-VIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeE-EEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999998875 3454 44556667899999999999999999999988763
No 473
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=231.38 Aligned_cols=171 Identities=22% Similarity=0.298 Sum_probs=134.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-------cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-------~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.++ ..+|+|++||+++..... ++.++|++|++.+++.+||+||+.+...+... .
T Consensus 52 l~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~ 118 (233)
T PRK11629 52 LHLLGGLDT---PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK----------K 118 (233)
T ss_pred HHHHhcCCC---CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC----------C
Confidence 467888764 358999999998764321 25699999999999999999999987543210 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
.. +.++.++.+++.+||++..++.+ +.||||||||++||+||+.+|+|++|
T Consensus 119 ~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllL 169 (233)
T PRK11629 119 PA------------------------EINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLA 169 (233)
T ss_pred HH------------------------HHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 00123677899999988777665 46999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcCh
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 215 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~ 215 (1230)
||||+|||+.+...+.+.|+++++..+.|+|++.|+ ..++.. +|++++|++|++++.|+.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~-~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 170 DEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD-LQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHh-hCEEEEEECCEEEEEecc
Confidence 999999999999999999999865445666665554 556665 589999999999998875
No 474
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=7.3e-24 Score=208.86 Aligned_cols=161 Identities=23% Similarity=0.347 Sum_probs=134.4
Q ss_pred ceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCch
Q 000907 13 KASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDAD 86 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~ 86 (1230)
-..|+|.+||++++... .||.+|.|.|+--|+++.||.||+.|..+..+..
T Consensus 54 pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~----------------------- 110 (223)
T COG2884 54 PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP----------------------- 110 (223)
T ss_pred CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCC-----------------------
Confidence 45899999999997542 4689999999999999999999999987765421
Q ss_pred hhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHH
Q 000907 87 IDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 166 (1230)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~ 166 (1230)
..++++.|.++|+..||.+.++. ....|||||||||+||||++.+|++|+-||||-.||+.++.
T Consensus 111 -----------~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~ 174 (223)
T COG2884 111 -----------PREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174 (223)
T ss_pred -----------HHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHH
Confidence 11234568889999999999984 44579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcC
Q 000907 167 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 214 (1230)
Q Consensus 167 ~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~ 214 (1230)
+|++.+.++.+ .|.| |+.-+|...-+-.+-.+++.|++|+++....
T Consensus 175 ~im~lfeeinr-~GtT-Vl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 175 EIMRLFEEINR-LGTT-VLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHhh-cCcE-EEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999986 4444 4445566666677777999999999987643
No 475
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=1.8e-23 Score=228.87 Aligned_cols=180 Identities=26% Similarity=0.311 Sum_probs=134.3
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh--------CCCC--CC---eEEE------EEEECCeecChh-----
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA--------GRKT--RG---YITG------NITISGYPKNQE----- 742 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~--------g~~~--~~---~~~G------~i~~~g~~~~~~----- 742 (1230)
.-|+|||..|+.|++++|.|+||||||||++.+. +... ++ ...| -|.+|..++...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4799999999999999999999999999998552 1100 10 1111 366776554210
Q ss_pred -c-------cc----------------ceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 000907 743 -T-------FT----------------RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798 (1230)
Q Consensus 743 -~-------~~----------------~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 798 (1230)
. .| ..+.|..++......+||.|++.|...+. ..+++.++++.+||.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCc
Confidence 0 00 01345556666667899999998875432 123467789999997
Q ss_pred cc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 799 PL-RQALVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 799 ~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~~~---p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
.. .+.. .+.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++..
T Consensus 160 ~l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~ 234 (261)
T cd03271 160 YIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV 234 (261)
T ss_pred hhhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 63 4443 357999999999999999996 79999999999999999999999999998889999999999862
Q ss_pred HHHHHHhc
Q 000907 875 DIFEAFDA 882 (1230)
Q Consensus 875 ~i~~~fd~ 882 (1230)
.+..|+
T Consensus 235 --i~~aD~ 240 (261)
T cd03271 235 --IKCADW 240 (261)
T ss_pred --HHhCCE
Confidence 244555
No 476
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.90 E-value=5.1e-24 Score=266.04 Aligned_cols=178 Identities=21% Similarity=0.335 Sum_probs=134.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|.... .+|+|++||.++++.. .++.++||+|++.+|+ .|+||||.++..-. ...+
T Consensus 378 l~lL~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~------------~d~~- 440 (588)
T PRK13657 378 INLLQRVFDP---QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGRPDA------------TDEE- 440 (588)
T ss_pred HHHHhcCcCC---CCCEEEECCEEhhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCCCCC------------CHHH-
Confidence 3567777653 5899999999987653 3578999999988775 69999998863100 0000
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
+...... .-.+..++ .|+++.||.+|+++ +.||||||||++|||||+++|+|++|||||
T Consensus 441 -------------i~~al~~-----~~l~~~i~--~lp~gldt~i~~~g-~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 441 -------------MRAAAER-----AQAHDFIE--RKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred -------------HHHHHHH-----hCHHHHHH--hCcccccchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0000000 00111222 27889999999765 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..+.+.|+++. .++|+++..|++ +....+|+|++|++|++++.|+++++.+
T Consensus 500 s~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 500 SALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred cCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999998764 357777766665 4567899999999999999999999854
No 477
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.3e-23 Score=235.69 Aligned_cols=174 Identities=19% Similarity=0.247 Sum_probs=137.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|+|.++. .+|+|+++|.++.... .++.+|||+|++. .++..||+||+.|+....+. ...
T Consensus 48 l~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~----------~~~- 113 (274)
T PRK13647 48 LLHLNGIYLP---QRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL----------DKD- 113 (274)
T ss_pred HHHHhcCCCC---CceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCC----------CHH-
Confidence 4677777653 5899999999876432 2467999999862 45568999999986432110 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
+.++.++.+++.+||.+..+..++ .|||||||||+||+||+.+|++++||||
T Consensus 114 -----------------------~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 114 -----------------------EVERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred -----------------------HHHHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 011236778999999988887664 5999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|+|||+.++..+++.|+++++ .+.|+++ ++|...++.+.+|+|++|++|++++.|+++++
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~-~g~tili-~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHN-QGKTVIV-ATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999875 3555554 55667788899999999999999999998654
No 478
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.90 E-value=1e-23 Score=234.41 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=138.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-----------cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-----------VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDML 69 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-----------~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~ 69 (1230)
||+|+|.++ ..+|+|.++|.++... ..++.++||+|++.+++.+||+||+.++.......
T Consensus 46 l~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~------ 116 (250)
T PRK11264 46 LRCINLLEQ---PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGE------ 116 (250)
T ss_pred HHHHhcCCC---CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCC------
Confidence 467888765 3479999999887531 12467999999999999999999998864211000
Q ss_pred hhhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCc
Q 000907 70 VELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAH 149 (1230)
Q Consensus 70 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ 149 (1230)
.. ++.++.++.+++.+||++..|+.+ +.|||||||||+||+||+.+|+
T Consensus 117 ---~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~ 164 (250)
T PRK11264 117 ---PK------------------------EEATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPE 164 (250)
T ss_pred ---CH------------------------HHHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCC
Confidence 00 001123567889999988777655 4699999999999999999999
Q ss_pred eeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 150 ALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 150 ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|++|||||+|||+.++..+.+.|+++++ .+.|+++ ++|...++.+.+|++++|++|++++.|+.+++
T Consensus 165 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~-~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 165 VILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVI-VTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEE-EeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999998875 3556555 55666788899999999999999999998876
No 479
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.1e-23 Score=225.26 Aligned_cols=151 Identities=39% Similarity=0.720 Sum_probs=125.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|++|+|..+.....+|+|+++|.++... ..++.++||+|++.+++.+||+||+.++++..
T Consensus 50 l~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------ 111 (202)
T cd03233 50 LKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------ 111 (202)
T ss_pred HHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc------------------
Confidence 4678887653224689999999987643 23567999999999999999999998864310
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+ ...+.||||||||++||+||+.+|++++|||||+
T Consensus 112 ---------------------------------------~~-----~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~ 147 (202)
T cd03233 112 ---------------------------------------GN-----EFVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147 (202)
T ss_pred ---------------------------------------cc-----cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCc
Confidence 11 2224699999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
|||+.++..+++.|+++++..++|+++++||+..++.+.+|++++|++|++++.|
T Consensus 148 ~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 148 GLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999876445677888888889999999999999999999876
No 480
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.90 E-value=1.2e-23 Score=235.74 Aligned_cols=177 Identities=19% Similarity=0.316 Sum_probs=140.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|..+. .+|+|+++|.++.... .++.++|++|+..+++.+||+||+.+....... + ..
T Consensus 50 l~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~---~------~~ 117 (269)
T PRK11831 50 LRLIGGQIAP---DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ---L------PA 117 (269)
T ss_pred HHHHhCCCCC---CCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccC---C------CH
Confidence 4678887653 4899999999875321 245799999999999999999999986431100 0 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +.++.++.+++.+||.+..|..++ .||||||||++||++|+.+|++++||
T Consensus 118 ~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLD 168 (269)
T PRK11831 118 P------------------------LLHSTVMMKLEAVGLRGAAKLMPS-----ELSGGMARRAALARAIALEPDLIMFD 168 (269)
T ss_pred H------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 011235678999999988887664 59999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||+|||+.+...+.+.|+++++..++|+|+ ++|...++...+|++++|++|++++.|+++++.
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii-vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 169 EPFVGQDPITMGVLVKLISELNSALGVTCVV-VSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCcEEEE-EecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999987643555555 555667889999999999999999999988763
No 481
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=6.1e-24 Score=231.17 Aligned_cols=165 Identities=24% Similarity=0.329 Sum_probs=130.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.++ ..+|+|.+||.++.... .++.++||+|++.+++.+||+||+.++...++..
T Consensus 47 l~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~---------- 113 (218)
T cd03255 47 LNILGGLDR---PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP---------- 113 (218)
T ss_pred HHHHhCCcC---CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCC----------
Confidence 467888765 34899999999875422 2357999999999999999999999976533100
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ ..+.++.+++.+||.+..+..++ .|||||||||+||+||+.+|+|++|
T Consensus 114 ~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lllL 164 (218)
T cd03255 114 KKE------------------------RRERAEELLERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILA 164 (218)
T ss_pred HHH------------------------HHHHHHHHHHHcCCchhhhcChh-----hcCHHHHHHHHHHHHHccCCCEEEE
Confidence 000 01236778999999887776654 5999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 209 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~v 209 (1230)
||||+|||+.++..+.+.|+++++..+.|++++.|++ .++. .+|++++|++|++
T Consensus 165 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 165 DEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999998753456666655554 5665 8999999999974
No 482
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.90 E-value=3.2e-24 Score=272.46 Aligned_cols=178 Identities=23% Similarity=0.320 Sum_probs=134.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|... ..+|+|++||.++++.. .|+.++||+|++.+|+ .|++|||.++..- .+. +.
T Consensus 500 ~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~~~------------~~~-~~ 562 (694)
T TIGR01846 500 TKLLQRLYT---PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCNPG------------APF-EH 562 (694)
T ss_pred HHHHhcCCC---CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCCCC------------CCH-HH
Confidence 356677654 34799999999987653 4678999999988776 6999999875310 000 00
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
. .+. .. . . ..++.++ .|+++.||.||+.+ ++||||||||++|||||+++|+|++|||||
T Consensus 563 i------------~~a-~~---~-~-~l~~~i~--~lp~gl~t~i~~~g-~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 563 V------------IHA-AK---L-A-GAHDFIS--ELPQGYNTEVGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred H------------HHH-HH---H-c-ChHHHHH--hCcCccCcEecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 0 000 00 0 0 0122222 27889999999765 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||+.++..+.+.|+++. .++|+|+..|++ +.+ ..+|+|++|++|++++.|+++++.+
T Consensus 622 s~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~~-~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 622 SALDYESEALIMRNMREIC--RGRTVIIIAHRL-STV-RACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred cCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh-HHH-HhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999874 356766666554 444 5699999999999999999999864
No 483
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.90 E-value=5.4e-24 Score=272.92 Aligned_cols=181 Identities=26% Similarity=0.396 Sum_probs=155.5
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCC----cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEF----VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
|+|.|... ..+|+++++|+++... +.++.+|||||+|.+++.+|.||||++.+++|+-.
T Consensus 609 ~mltG~~~---~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~-------------- 671 (885)
T KOG0059|consen 609 KMLTGETK---PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP-------------- 671 (885)
T ss_pred HHHhCCcc---CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC--------------
Confidence 34455433 5689999999998642 25689999999999999999999999999998721
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
..| .++.++.+++.+||.+.+|+.+| .+|||+|||+|+|.||+++|++++|||||
T Consensus 672 ------~~d--------------i~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPs 726 (885)
T KOG0059|consen 672 ------RSD--------------IGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPS 726 (885)
T ss_pred ------hhH--------------HHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCC
Confidence 111 23458889999999999999886 49999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCC
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGF 227 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~ 227 (1230)
+|+|+.+++++|+.++++.+ .|+ .++.++|.+.|+..+|||+.+|.+|++..-|+.++++..|.+ ||
T Consensus 727 tGmDP~arr~lW~ii~~~~k-~g~-aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~-gy 793 (885)
T KOG0059|consen 727 TGLDPKARRHLWDIIARLRK-NGK-AIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS-GY 793 (885)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCC-EEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCC-cE
Confidence 99999999999999999875 445 666778999999999999999999999999999999988754 44
No 484
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.90 E-value=8e-24 Score=234.36 Aligned_cols=183 Identities=22% Similarity=0.262 Sum_probs=138.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
|++|+|..+ ..+|+|.+||.++.... .++.++||+|++.+++.+||+||+.++..... ..++......
T Consensus 45 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~- 118 (243)
T TIGR02315 45 LRCINRLVE---PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK--PTWRSLLGRF- 118 (243)
T ss_pred HHHHhCCcC---CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc--cchhhhhccc-
Confidence 467888765 34899999999875421 24679999999999999999999987532100 0000000000
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
..+..+.++.+++.+||.+..|..+ +.|||||||||+||+||+.+|++++||
T Consensus 119 -----------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllD 170 (243)
T TIGR02315 119 -----------------------SEEDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILAD 170 (243)
T ss_pred -----------------------cHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0001123677899999988777655 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+|||+.+...+.+.|+++++..+.|+++ ++|...++.+.+|++++|++|++++.|+++++
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii-~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 171 EPIASLDPKTSKQVMDYLKRINKEDGITVII-NLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999987544555555 55556788899999999999999999998765
No 485
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.6e-23 Score=230.10 Aligned_cols=176 Identities=24% Similarity=0.358 Sum_probs=140.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|.++ ..+|+|+++|.++.... .++.++||+|++.+++.+||+||+.++....+. ...+
T Consensus 42 l~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~----------~~~~--- 105 (235)
T cd03299 42 LETIAGFIK---PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV----------DKKE--- 105 (235)
T ss_pred HHHHhCCcC---CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC----------CHHH---
Confidence 467888765 34799999999876422 246899999999999999999999986532110 0000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
..+.++.+++.+||.+-.++.+. .||||||||++||+||+++|++++|||||+|
T Consensus 106 ---------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 106 ---------------------IERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred ---------------------HHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 01135668889999888887664 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+++.|++++...+.|++++.|+ ..++.+.+|++++|++|++++.|+.+++.
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHD-FEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999876446666665554 57788999999999999999999987764
No 486
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.90 E-value=3.2e-24 Score=267.91 Aligned_cols=178 Identities=22% Similarity=0.369 Sum_probs=134.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|+|+|... ..+|+|++||.++++.. .++.++||+|++.+|+ .|+||||.++..-.. ... +
T Consensus 376 ~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~-----------~~~-~- 438 (571)
T TIGR02203 376 NLIPRFYE---PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGRTEQA-----------DRA-E- 438 (571)
T ss_pred HHHHhccC---CCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCCCCCC-----------CHH-H-
Confidence 55666654 34799999999987543 3578999999988665 599999997631000 000 0
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+.+.... .-.+..++ .|+++.||.||+.+ ++||||||||++||||++++|+|++||||||
T Consensus 439 ------------i~~~l~~-----~~l~~~i~--~lp~gldt~i~~~g-~~LSgGqrQRiaLARall~~~~illLDEpts 498 (571)
T TIGR02203 439 ------------IERALAA-----AYAQDFVD--KLPLGLDTPIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATS 498 (571)
T ss_pred ------------HHHHHHH-----cChHHHHH--hCcCcccceecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 0000000 00111222 37889999999775 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..+.+.|++.+ .++|+|+..|++ +....+|+|++|++|+++..|+++++.+
T Consensus 499 ~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 499 ALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred cCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999764 357777776665 5678899999999999999999999853
No 487
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.90 E-value=5.7e-24 Score=262.83 Aligned_cols=179 Identities=22% Similarity=0.314 Sum_probs=135.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|..+ ..+|+|++||.++++.. .++.++||+|++.+|+. |++||+.++..- .+.++
T Consensus 361 ~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~------------~~~~~- 423 (544)
T TIGR01842 361 ARLIVGIWP---PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGEN------------ADPEK- 423 (544)
T ss_pred HHHHhCCCC---CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCC------------CCHHH-
Confidence 356777664 34799999999987543 36789999999988875 999999854310 00000
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
. .+. . + ....++.++ .|+++.||.+|+.+ ++||||||||++|||||+++|+|++|||||
T Consensus 424 ~------------~~~-~---~--~~~~~~~i~--~l~~gl~t~~~~~g-~~LSgGq~qrl~lARall~~~~ililDEpt 482 (544)
T TIGR01842 424 I------------IEA-A---K--LAGVHELIL--RLPDGYDTVIGPGG-ATLSGGQRQRIALARALYGDPKLVVLDEPN 482 (544)
T ss_pred H------------HHH-H---H--HhChHHHHH--hCccccccccCCCc-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 000 0 0 001223333 36788899999765 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||+.++..+.+.|+++.. .++|++++.|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 483 s~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 483 SNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999988753 3577777776663 456799999999999999999998753
No 488
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=1.3e-23 Score=232.01 Aligned_cols=175 Identities=18% Similarity=0.260 Sum_probs=138.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-----cccceEEEecccccccCCCCHHHHHHHHhhc-cCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSARC-QGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l-~~~~~~~~~~~~~~~ 74 (1230)
|++|+|..+ ..+|+|.+||.++... ..++.++||+|++.+++.+||+||+.|+... ... ..
T Consensus 44 l~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~ 110 (240)
T PRK09493 44 LRCINKLEE---ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA----------SK 110 (240)
T ss_pred HHHHhCCCC---CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCC----------CH
Confidence 467777764 3589999999987642 2246799999999999999999999886421 100 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +..+.++++++.+||++..|..+ +.||||||||++||+||+.+|++++||
T Consensus 111 ~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllD 161 (240)
T PRK09493 111 E------------------------EAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFD 161 (240)
T ss_pred H------------------------HHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 01123577899999987777655 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||+|||..+...+.+.|+++++ .++|+++ ++|...++...+|++++|++|++++.|+.+++.
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 162 EPTSALDPELRHEVLKVMQDLAE-EGMTMVI-VTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-cCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999998865 4556555 555567888999999999999999999988763
No 489
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.3e-23 Score=227.28 Aligned_cols=170 Identities=22% Similarity=0.314 Sum_probs=135.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|..+ ..+|+|.++|.++.... .++.++||+|++.+++.+||+||+.++...... ...
T Consensus 41 l~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~---------~~~----- 103 (211)
T cd03298 41 LNLIAGFET---PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK---------LTA----- 103 (211)
T ss_pred HHHHhCCCC---CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC---------ccH-----
Confidence 467777764 34799999999875432 246799999999999999999999885431100 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++.+++.+||.+..++.+. .||||||||++||+||+.+|++++|||||+|
T Consensus 104 --------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 104 --------------------EDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred --------------------HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 001236778999999988887664 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||..++..+++.|+++++..+.|+++ ++|...++.+.+|++++|++|++++.|
T Consensus 159 LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLM-VTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999987544555555 666678888999999999999998765
No 490
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.90 E-value=1.3e-23 Score=229.74 Aligned_cols=175 Identities=25% Similarity=0.299 Sum_probs=136.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|.++ ..+|+|.+||.++..... ..+||+|++.+++.+||+||+.++....... ....
T Consensus 28 l~~l~Gl~~---p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~--------~~~~----- 89 (230)
T TIGR01184 28 LNLISGLAQ---PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLPD--------LSKS----- 89 (230)
T ss_pred HHHHhCCCC---CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcccC--------CCHH-----
Confidence 467777765 358999999998764322 2489999999999999999999863210000 0000
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
+.++.++.+++.+||++..++.++ .||||||||++||++|+.+|++++|||||+||
T Consensus 90 -------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 145 (230)
T TIGR01184 90 -------------------ERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGAL 145 (230)
T ss_pred -------------------HHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 011235678999999988887664 59999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|+.++..+.+.|+++++..++|+++ ++|...++.+.+|++++|++|++++.|+..++
T Consensus 146 D~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 146 DALTRGNLQEELMQIWEEHRVTVLM-VTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999999987644566555 55556788999999999999999999976544
No 491
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.90 E-value=1.9e-23 Score=229.85 Aligned_cols=176 Identities=23% Similarity=0.322 Sum_probs=138.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|++|+|..+. .+|+|++||.++.... .++.++|++|++.+++.+||+||+.+.+..+.. ...
T Consensus 44 l~~l~G~~~p---~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~----------~~~--- 107 (236)
T TIGR03864 44 FSLLTRLYVA---QEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL----------SRA--- 107 (236)
T ss_pred HHHHhCCcCC---CceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC----------CHH---
Confidence 4678887653 4799999999875422 235799999999888999999999886543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++..++.++ .||||||||++||+||+.+|+|++|||||+
T Consensus 108 ---------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 108 ---------------------EARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred ---------------------HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 001235678899999988887665 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.+...+.+.|+++++..+.|++++. |...++.. +|++++|++|++++.|+.+++.+
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWAT-HLVDEIEA-DDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cChhhHhh-CCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999999999998754456665555 44556654 99999999999999999887643
No 492
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.8e-23 Score=235.12 Aligned_cols=175 Identities=18% Similarity=0.280 Sum_probs=138.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccc-cccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHD-IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d-~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
||+|+|.++ ..+|+|+++|.++.... .++.++||+|++ ..++..||+|||.|+.+..+. ...
T Consensus 50 l~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~----------~~~- 115 (279)
T PRK13650 50 VRLIDGLLE---AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGI----------PHE- 115 (279)
T ss_pred HHHHhcCCC---CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCC----------CHH-
Confidence 466777765 34899999999986432 246799999986 367788999999987542210 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
+..+.++.+++.+||++-.|..++ .||||||||++||+||+.+|+||+||||
T Consensus 116 -----------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEP 167 (279)
T PRK13650 116 -----------------------EMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRVAIAGAVAMRPKIIILDEA 167 (279)
T ss_pred -----------------------HHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 112246789999999988776664 6999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|+|||+.++..+++.|+++++..|.|++++.|+ ..++ ..+|+|++|++|+++..|+.+++.
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~-~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 168 TSMLDPEGRLELIKTIKGIRDDYQMTVISITHD-LDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999976446666665555 5566 579999999999999999988764
No 493
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.5e-23 Score=225.32 Aligned_cols=183 Identities=25% Similarity=0.322 Sum_probs=146.2
Q ss_pred ccccCCcC-C-CCceeEEEEECCccCCCCc------cc-ceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhh
Q 000907 2 LALAGKLD-S-SLKASGKVTYNGHDMHEFV------PQ-RTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLV 70 (1230)
Q Consensus 2 ~~Lag~~~-~-~~~~~G~V~vnG~~~~~~~------~~-~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~ 70 (1230)
++|.|.++ + +...+|+|.++|.++-... .| +.++|++|++ .|-|.+||.+.+.=..+.....
T Consensus 49 ~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~------- 121 (316)
T COG0444 49 KAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG------- 121 (316)
T ss_pred HHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcc-------
Confidence 45677776 3 4467899999999874332 12 6899999995 6899999999997655432100
Q ss_pred hhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 71 ELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 71 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
. ..+++.+.+.++|+.+||++-.. +-+.....|||||||||.||.||+.+|++
T Consensus 122 --~-----------------------~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 122 --L-----------------------SKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred --h-----------------------hhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 0 01123345677999999987532 22356778999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|+.||||||||..+..+|++.|+++.+. .+++++.|+|...-+.+++|||+||..|++|+.|+.+++.
T Consensus 175 lIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred EEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 9999999999999999999999999984 4666777999999999999999999999999999999874
No 494
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.2e-23 Score=237.59 Aligned_cols=175 Identities=19% Similarity=0.238 Sum_probs=137.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVE 71 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~ 71 (1230)
||+|+|.+. ..+|+|+++|+++... ..++.+|||+|++ .+++ .||+||+.|+....+.
T Consensus 50 l~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~--------- 116 (286)
T PRK13646 50 IQNINALLK---PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKM--------- 116 (286)
T ss_pred HHHHhcCCC---CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCC---------
Confidence 467777765 3479999999987532 2356899999985 4555 5999999987532110
Q ss_pred hhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 72 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
... +..+.++.+++.+||. +..++.+ +.||||||||++||+||+.+|+|
T Consensus 117 -~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~laraL~~~p~i 166 (286)
T PRK13646 117 -NLD------------------------EVKNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQMRKIAIVSILAMNPDI 166 (286)
T ss_pred -CHH------------------------HHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHhCCCE
Confidence 000 0112367789999996 6777655 46999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
++|||||+|||+.++..+.+.|+++++..+.|+ +.++|...++.+.+|+|++|++|++++.|+++++.
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv-l~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 167 IVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTI-ILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhCCCEE-EEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999876444554 45666677888999999999999999999988764
No 495
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2e-23 Score=234.69 Aligned_cols=175 Identities=23% Similarity=0.288 Sum_probs=139.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|+|.++. .+|+|+++|+++.+.. .++.++||+|++. +++.+||+|||.++.+.... ...
T Consensus 50 l~~i~G~~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~----------~~~- 115 (279)
T PRK13635 50 AKLLNGLLLP---EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV----------PRE- 115 (279)
T ss_pred HHHHhcCCCC---CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCC----------CHH-
Confidence 4678888753 4899999999986532 2467999999873 67778999999987543210 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
+..+.++.+++.+||.+..++.++ .|||||||||+||+||+.+|+|++||||
T Consensus 116 -----------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEP 167 (279)
T PRK13635 116 -----------------------EMVERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVAIAGVLALQPDIIILDEA 167 (279)
T ss_pred -----------------------HHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 011246788999999988887765 5999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|+|||+.++..+++.|+++++..+.|++++.|+ ..++. .+|+|++|++|++++.|+.+++.
T Consensus 168 t~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~-~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 168 TSMLDPRGRREVLETVRQLKEQKGITVLSITHD-LDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC-HHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999886445666665555 45665 59999999999999999988764
No 496
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-23 Score=238.54 Aligned_cols=177 Identities=19% Similarity=0.193 Sum_probs=141.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVEL 72 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~ 72 (1230)
+++|+|.+.. .+|+|.++|.++.... .++.++||+|++ .+.+.+||.+++.+..+.... .
T Consensus 58 l~~l~gl~~p---~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~---------~ 125 (327)
T PRK11308 58 ARLLTMIETP---TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTS---------L 125 (327)
T ss_pred HHHHHcCCCC---CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccC---------C
Confidence 4677887653 4899999999886432 246799999997 689999999999876443210 0
Q ss_pred hHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCcee
Q 000907 73 SRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHAL 151 (1230)
Q Consensus 73 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~IL 151 (1230)
... +..+.+..+++.+||. +..|..+ +.|||||||||+||+||+.+|+||
T Consensus 126 ~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~QRv~iArAL~~~P~lL 176 (327)
T PRK11308 126 SAA------------------------ERREKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQRIAIARALMLDPDVV 176 (327)
T ss_pred CHH------------------------HHHHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHHHHHHHHHHHcCCCEE
Confidence 000 0122467899999996 4666654 469999999999999999999999
Q ss_pred eeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 152 FMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 152 lLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
++||||||||..++.+|++.|+++.+..+. +++.|+|....+...+|+|++|++|++++.|+.+++.
T Consensus 177 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~-til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 177 VADEPVSALDVSVQAQVLNLMMDLQQELGL-SYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999998764444 4556778888999999999999999999999998874
No 497
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.8e-23 Score=235.62 Aligned_cols=177 Identities=23% Similarity=0.294 Sum_probs=138.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCC--C---cccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHE--F---VPQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~--~---~~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++ ..+|+|+++|+++.. . ..++.+|||+|++. .+...||+||+.++....+. ..
T Consensus 49 l~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~----------~~ 115 (283)
T PRK13636 49 FQNLNGILK---PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL----------PE 115 (283)
T ss_pred HHHHhcCCC---CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCC----------CH
Confidence 467888765 358999999998741 1 23467999999863 34457999999986532110 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
.+ ..+.++.+++.+||.+..|+.+ +.||||||||++||+||+.+|+||+||
T Consensus 116 ~~------------------------~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilD 166 (283)
T PRK13636 116 DE------------------------VRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLD 166 (283)
T ss_pred HH------------------------HHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00 1123678899999998877665 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+|||+.+...+.+.|+++++..|+|+++ ++|..+++...+|++++|++|++++.|+.+++..
T Consensus 167 EPt~gLD~~~~~~l~~~l~~l~~~~g~till-vsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 167 EPTAGLDPMGVSEIMKLLVEMQKELGLTIII-ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEE-EecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999987644555555 5566778888999999999999999999988743
No 498
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.90 E-value=2e-23 Score=228.75 Aligned_cols=179 Identities=21% Similarity=0.266 Sum_probs=137.0
Q ss_pred CccccCCcCCC-CceeEEEEECCccCCCCcc-cceEEEeccccc--ccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSS-LKASGKVTYNGHDMHEFVP-QRTAAYISQHDI--HIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~-~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~--l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
||+|+|..+.. ...+|+|+++|+++..... ++.++||+|++. +.+.+|+.||+.+.....+. ...
T Consensus 29 l~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~----------~~~- 97 (230)
T TIGR02770 29 CLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGK----------LSK- 97 (230)
T ss_pred HHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCc----------cHH-
Confidence 46788876431 0158999999998764333 357999999974 56778999999876432110 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcc---cccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV---CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~---~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
+..+.++.+++.+||++ ..+..+ +.|||||||||+||++|+.+|+|++|
T Consensus 98 -----------------------~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 98 -----------------------QARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred -----------------------HHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00123677899999984 344433 46999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||+|||..+...+.+.|+++++..++|+++ ++|...++...+|++++|++|++++.|+.+++.
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii-~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILL-ITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999987533555555 555667888999999999999999999988774
No 499
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.9e-23 Score=237.51 Aligned_cols=183 Identities=21% Similarity=0.210 Sum_probs=140.0
Q ss_pred CccccCCcCCCC-ceeEEEEECCccCCCCcc-------cceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhh
Q 000907 1 MLALAGKLDSSL-KASGKVTYNGHDMHEFVP-------QRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLV 70 (1230)
Q Consensus 1 l~~Lag~~~~~~-~~~G~V~vnG~~~~~~~~-------~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~ 70 (1230)
+++|+|.++... ..+|+|.++|.++..... ++.++||+|++ .+.|.+||.+++....+....
T Consensus 50 ~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~-------- 121 (326)
T PRK11022 50 SLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG-------- 121 (326)
T ss_pred HHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcC--------
Confidence 367888775322 358999999999864321 13699999997 588999999998765432110
Q ss_pred hhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 71 ELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 71 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
... ++.++.++.+|+.+||.+..+. . +...+.|||||||||+||+||+.+|+|
T Consensus 122 -~~~------------------------~~~~~~~~~~L~~~gL~~~~~~-l-~~~p~~LSgGq~QRv~iArAL~~~P~l 174 (326)
T PRK11022 122 -GNK------------------------KTRRQRAIDLLNQVGIPDPASR-L-DVYPHQLSGGMSQRVMIAMAIACRPKL 174 (326)
T ss_pred -CCH------------------------HHHHHHHHHHHHHCCCCChHHH-H-hCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 000 0112346789999999753211 1 133457999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|++||||||||..++.+|++.|+++.+..+.| ++.++|....+...+|+|++|++|++++.|+.+++.
T Consensus 175 lilDEPts~LD~~~~~~il~lL~~l~~~~g~t-il~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 175 LIADEPTTALDVTIQAQIIELLLELQQKENMA-LVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999998654555 555667778899999999999999999999998874
No 500
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=1.3e-23 Score=226.06 Aligned_cols=162 Identities=22% Similarity=0.327 Sum_probs=129.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|..+ ..+|+|+++|.++.....++.++||+|++. .+..+||+||+.++.....
T Consensus 43 l~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~------------------ 101 (205)
T cd03226 43 AKILAGLIK---ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD------------------ 101 (205)
T ss_pred HHHHhcCCC---CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC------------------
Confidence 467888765 358999999998754334567999999864 3456799999988643210
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
...+.++.+++.+||.+..++.++ .||||||||++|||||+.+|++++|||||+|
T Consensus 102 --------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~ 156 (205)
T cd03226 102 --------------------AGNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156 (205)
T ss_pred --------------------ccHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 001135678999999988887664 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEE
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV 210 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv 210 (1230)
||+.++..+.+.|+++++ .++|++++. |...++...+|++++|++|+++
T Consensus 157 LD~~~~~~l~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 157 LDYKNMERVGELIRELAA-QGKAVIVIT-HDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999865 456666554 5556788899999999999975
Done!