Query 000907
Match_columns 1230
No_of_seqs 320 out of 4420
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 17:02:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000907.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_675-679//hhsearch_pdb/000907hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 572.8 47.5 202 657-882 1073-1284(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 507.8 43.0 201 658-882 1028-1238(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 362.1 27.3 184 660-882 357-541 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 357.8 21.4 184 660-882 287-471 (538)
5 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 356.7 24.3 186 660-882 269-455 (538)
6 2iw3_A Elongation factor 3A; a 1.0 1 1 347.5 28.5 191 660-882 671-967 (986)
7 3ux8_A Excinuclease ABC, A sub 1.0 1 1 344.3 25.7 169 15-218 100-296 (670)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 328.2 26.5 171 687-882 361-537 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 315.9 32.3 156 14-219 395-559 (916)
10 3rlf_A Maltose/maltodextrin im 1.0 1 1 304.4 26.5 199 660-882 3-203 (381)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=572.78 Aligned_cols=202 Identities=27% Similarity=0.372 Sum_probs=164.9
Q ss_pred CCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 87036894249999567210114523783257534289995772999995999949999998959998971899999989
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 736 (1230)
....++|+|++++|+.. ...++|+|+|+.|+|||.+||+||||||||||+++|.|..++ .+|+|.+||
T Consensus 1073 ~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG 1140 (1321)
T 4f4c_A 1073 LYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDG 1140 (1321)
T ss_dssp CCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETT
T ss_pred CCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECC
T ss_conf 88818999879857999----------988212451699889899999899998199999999568638--997899999
Q ss_pred EECC---HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCC
Q ss_conf 5168---0012455999714886699999999999999820898999999999999999991998-------43323235
Q 000907 737 YPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVG 806 (1230)
Q Consensus 737 ~~~~---~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~g 806 (1230)
.+.. ...+|+.++||+|++.++. -|++||+.|+. .|.+.+ ++.+++.++..++. +-.|+.+|
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred EEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCCC----HHHHHHHHHHHCCHHHHHCCCCCCCCEEC
T ss_conf 98654999999854599878997327-23999974549---999999----99999999982984999717678999823
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 9999888988999999999996199776994999999999999999999998848988999914898889998713
Q 000907 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 807 ~~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
+.| ..||||||||+||||||+++|+||+||||||+||+.++..|++.|++.. +|+|+|+++|+++. ...+|+
T Consensus 1213 e~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~ 1284 (1321)
T 4f4c_A 1213 DRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADC 1284 (1321)
T ss_dssp TTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSE
T ss_pred CCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHCCE
T ss_conf 889-1569999999999999971799899968111578999999999999973-99989996068999--996999
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=507.83 Aligned_cols=201 Identities=25% Similarity=0.360 Sum_probs=158.1
Q ss_pred CCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCE
Q ss_conf 70368942499995672101145237832575342899957729999959999499999989599989718999999895
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 737 (1230)
...++++|++++++.. ...++|+|+|+.++|||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 1028 ~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSS
T ss_pred CCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE
T ss_conf 7857999989977999----------987002030599769988999889999789999999468678--9977989999
Q ss_pred ECCH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCC
Q ss_conf 1680---01245599971488669999999999999982089899999999999999999199-------8433232359
Q 000907 738 PKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-------NPLRQALVGL 807 (1230)
Q Consensus 738 ~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~g~ 807 (1230)
+... ...++.++||+|++.++ ..|++||+.+.... .....+ .+.+.++..++ .+-.|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred ECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCC
T ss_conf 800078999970268987787406-66699997466877---899999----9999999839599997270424561178
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 999888988999999999996199776994999999999999999999998848988999914898889998713
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
.+ ..||||||||++|||+|+++|+||+|||||+|||..++..+++.|++. .+|+|+|+++|+++. + ...|+
T Consensus 1168 ~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dr 1238 (1284)
T 3g5u_A 1168 KG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADL 1238 (1284)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSE
T ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCE
T ss_conf 88-933899999999999997499999986875557999999999999986-799989999558799-9-80998
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=362.12 Aligned_cols=184 Identities=23% Similarity=0.295 Sum_probs=150.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++..+. . ..|+++++.+++||+++|+||||||||||+++|+|..++ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEECEEEEEC-------------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE-----
T ss_conf 899913098744-------------3-489935153279989999999998999999999669888--8628999-----
Q ss_pred CHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80012455999714886699999999999999820898999999999999999991998433232359999888988999
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 819 (1230)
...++|++|+....+.+||.|++....... ....+.++++++.+++.+..+..++ .|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHH
T ss_pred -----EEEEEEEECCCCCCCCCCHHHHHHHHHCCC-------CCHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHHH
T ss_conf -----027999805766778984999997531258-------7789999999987699337549922-----37999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 9999999961997769949999999999999999999988-48988999914898889998713
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~-~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
|++||++|+.+|++++|||||+|||..++..+.+.|++++ +.|.|+|+++|++. .+....|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adr 541 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDR 541 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999974899899968744789999999999999999747989999909899-99986999
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=357.79 Aligned_cols=184 Identities=24% Similarity=0.310 Sum_probs=149.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. . ..|+++++.+++||+++|+||||||||||+++|+|..++ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEEEEEEEEC-------------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE-----
T ss_conf 899930799989-------------9-899907441289989999889999999999999679989--9718998-----
Q ss_pred CHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80012455999714886699999999999999820898999999999999999991998433232359999888988999
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 819 (1230)
...++|++|+....+.+||.|++........ . ..+.++++++.+++.+..+..++ .|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~--~-----~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL--N-----SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH--T-----CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHH
T ss_pred -----CCEEEEEECCCCCCCCCCHHHHHHHHHCCCC--C-----HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHH
T ss_conf -----7469998267767888859999986403688--7-----89999999997499156539944-----48999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 9999999961997769949999999999999999999988-48988999914898889998713
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~-~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
|++||++|+.+|++|+|||||+|||..+...+.+.|++++ +.|.|||+++|... ++....|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~dr 471 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDR 471 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999972899899939801089999999999999999867989999939899-99996899
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=356.66 Aligned_cols=186 Identities=23% Similarity=0.267 Sum_probs=151.3
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+++++++..+. . ..|+.+++.+++||+++|+||||||||||+++|+|..++ .+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE--
T ss_conf 699823399979-------------8-899826646889989999999999899999999578889--9818999984--
Q ss_pred CHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80012455999714886699999999999999820898999999999999999991998433232359999888988999
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 819 (1230)
.++|++|+.......||+|++.+... .. ... ....++++++.+++.+..+..++ .|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~--~~--~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASK--DA--LST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCS--ST--TCT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHH--HC--CCH--HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHH
T ss_conf -------56761400034547779999987553--11--211--69999999987599778628932-----27999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHC
Q ss_conf 99999999619977699499999999999999999999884-8988999914898889998713
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
||+||++|+.+|++++|||||+|||..++..+++.|+++++ .|.|||+++|... ++..+.|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDr 455 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADR 455 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999970899899969865799999999999999999738989999958899-99996899
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=347.46 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=134.8
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|++++++. ..+.+|+|+|+.+++||.++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 671 mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P--~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC--SEEEEEECTT--
T ss_pred EEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEECCC--
T ss_conf 6999846998189-----------874134322799828978999899998799999999579888--8608998686--
Q ss_pred CHHCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHH------------------------------------------
Q ss_conf 800124559997148866----9999999999999982------------------------------------------
Q 000907 740 NQETFTRISGYCEQNDIH----SPYVTVYESLLYSAWL------------------------------------------ 773 (1230)
Q Consensus 740 ~~~~~~~~~~yv~q~~~~----~~~ltv~e~l~f~~~l------------------------------------------ 773 (1230)
..++|++|+..+ ....|++|++.+....
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf ------42576313024332100114799998877504502555543321034355544200011232012344445554
Q ss_pred ----------------------------------------------------------CCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ----------------------------------------------------------0898999999999999999991
Q 000907 774 ----------------------------------------------------------RLSSEVNSKTREMFVEEVMELV 795 (1230)
Q Consensus 774 ----------------------------------------------------------r~~~~~~~~~~~~~v~~~l~~l 795 (1230)
+... .....++.++++++.+
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~--~~~~~~~~i~~~Le~l 887 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQ--FRPLTRKEIEEHCSML 887 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTC--CCCCCHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHC
T ss_conf 31222002100025543200000123432344321016777666766554432455543022--3234799999999976
Q ss_pred CCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9984-3-3232359999888988999999999996199776994999999999999999999998848988999914898
Q 000907 796 ELNP-L-RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 796 ~l~~-~-~~~~~g~~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~ 873 (1230)
||.. . .+..+ +.||||||||++||++|+.+|++++|||||+|||..+...+.+.|++. +.|||+++|++.
T Consensus 888 GL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e 959 (986)
T 2iw3_A 888 GLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE 959 (986)
T ss_dssp TCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH
T ss_pred CCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCEEEEEECCHH
T ss_conf 998054448980-----423999999999999998399999997986577999999999999974---997999979899
Q ss_pred HHHHHHHHC
Q ss_conf 889998713
Q 000907 874 IDIFEAFDA 882 (1230)
Q Consensus 874 ~~i~~~fd~ 882 (1230)
.+....|+
T Consensus 960 -~v~~l~Dr 967 (986)
T 2iw3_A 960 -FTKNLTEE 967 (986)
T ss_dssp -HHTTTCCE
T ss_pred -HHHHHCCE
T ss_conf -99985899
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=344.33 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=116.5
Q ss_pred EEEEEECCCCCCCCCCCCEEEEECCCCCC-------------------CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 47999899238987543128876565455-------------------67889899999996612888753023561299
Q 000907 15 SGKVTYNGHDMHEFVPQRTAAYISQHDIH-------------------IGEMTVRETLAFSARCQGVGSRYDMLVELSRR 75 (1230)
Q Consensus 15 sG~V~inG~~~~~~~~~~~~~yV~Q~d~l-------------------~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~ 75 (1230)
.|.+.++|.+.... .++.++|++|...+ ++.+||+||+.+...+... ..
T Consensus 100 ~~~i~~~~~~~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~ 167 (670)
T 3ux8_A 100 SPAISIDQKTTSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EK 167 (670)
T ss_dssp CCEEEESSCC------CCBHHHHTTCC-------------------------CC--------------------------
T ss_pred CCCEEECCCHHHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HH
T ss_conf 64157447201025-5000046511256677777531111234443334578599999975203643-----------14
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC--EEE
Q ss_conf 986102998225689999873012122579999998198544-54433687653476343412489998744970--534
Q 000907 76 EKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPAH--ALF 152 (1230)
Q Consensus 76 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~-~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~--Ill 152 (1230)
+.... +. ..++..+. -.+++.+||.+. .|..++ .|||||||||+||+||+.+|+ +++
T Consensus 168 ~~~~~-----------~~---~~~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLl 227 (670)
T 3ux8_A 168 EAQIA-----------RL---ILREIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYV 227 (670)
T ss_dssp -------------------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEE
T ss_pred HHHHH-----------HH---HHHHHHHH-HHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 56778-----------88---89999999-9899975984344149700-----18999999999999996289987899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEE------CCCEEEEECCHHHH
Q ss_conf 4179856035889999999998756169889999517994589610015785------49719987581129
Q 000907 153 MDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILV------SDGQIVYQGPLEHV 218 (1230)
Q Consensus 153 LDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL------~~G~vv~~G~~~~l 218 (1230)
|||||+|||+.+...+++.|+.+++ .+.|+++ ++|....+ ..+|++++| .+|++++.|+.+++
T Consensus 228 LDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 228 LDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIV-VEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp EECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEE-ECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHH-HHCCEEEEECCCCCCCCCEEEEECCHHHH
T ss_conf 9798568999999999999999997-4998999-95787999-62998999446665669889974089998
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=328.24 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=137.8
Q ss_pred EEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCHHCCCCEEEEECCCCCCCCCC
Q ss_conf 5753428999577-----29999959999499999989599989718999999895168001245599971488669999
Q 000907 687 VLLNGVSGAFRPG-----VLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYV 761 (1230)
Q Consensus 687 ~iL~~vs~~i~~G-----e~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~l 761 (1230)
.+++++|+.+.+| |+++|+||||||||||+++|+|..++. +|+. . .+..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC--CCCC------C----CCCCEEEECCCCCCCCCC
T ss_conf 446865899706851465189998888986999999996578787--8858------6----677379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999998208989999999999999999919984332323599998889889999999999961997769949999
Q 000907 762 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 762 tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrl~ia~~l~~~p~illlDEpts 841 (1230)
||+|++... .+. .... ...++++++.+++.+..+..++ .||||||||++||++|+.+|++++|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCCC---HHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--3246---8999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 999999999999999988-48988999914898889998713
Q 000907 842 GLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~~~-~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
|||..++..+++.|+++. +.|.|+|+++|... ++..+.|+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDr 537 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADK 537 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 899999999999999999757998999968899-99986899
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=315.91 Aligned_cols=156 Identities=20% Similarity=0.316 Sum_probs=111.0
Q ss_pred EEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 24799989923898754312887656545567889899999996612888753023561299986102998225689999
Q 000907 14 ASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKA 93 (1230)
Q Consensus 14 ~sG~V~inG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 93 (1230)
.+|+|+++|.++. -+..+||.|++.|...+...... ... . ....+
T Consensus 395 ~~~~V~i~G~~i~----------------~~~~~~v~~~l~~~~~~~l~~~~--~~~----~------------~~~~~- 439 (916)
T 3pih_A 395 EALSVKINGLNIH----------------EFTELSISEELEFLKNLNLTERE--REI----V------------GELLK- 439 (916)
T ss_dssp TGGGEEETTEEHH----------------HHHHSBHHHHHHHHHSCCCCTTT--TTT----H------------HHHHH-
T ss_pred HHCCCEECCCCHH----------------HHHHCCHHHHHHHHHHCCCCHHH--HHH----H------------HHHHH-
T ss_conf 7607278996489----------------95127799999999843576888--899----8------------76599-
Q ss_pred HHHHCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHH
Q ss_conf 873012122579999998198544-54433687653476343412489998744970--534417985603588999999
Q 000907 94 VVREGQEANVITDYILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPAH--ALFMDEISTGLDSSTTFHIVN 170 (1230)
Q Consensus 94 ~~~~~~~~~~~vd~il~~l~L~~~-~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~--IllLDEPTSGLDs~sa~~I~~ 170 (1230)
+.+ .....|..+||... .|..++ .|||||||||.||++|.++|+ +++|||||+|||+.....+++
T Consensus 440 ------~~~-~~~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~ 507 (916)
T 3pih_A 440 ------EIE-KRLEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK 507 (916)
T ss_dssp ------HHH-HHHHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred ------HHH-HHHHHHHHCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf ------999-999999976982012468712-----09999999999999982289986899979734799999999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEE------CCCEEEEECCHHHHH
Q ss_conf 9998756169889999517994589610015785------497199875811299
Q 000907 171 SLGQFNHILNGTALISLLQPAPEVYNLFDDIILV------SDGQIVYQGPLEHVE 219 (1230)
Q Consensus 171 ~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL------~~G~vv~~G~~~~l~ 219 (1230)
.|+++++ .|.|+++ +.|....+. .+|+|++| .+|++++.|+.+++.
T Consensus 508 ~L~~L~~-~G~Tviv-VtHd~~~~~-~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 508 TLKKLRD-LGNTVIV-VEHDEEVIR-NADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp HHHHTTT-TTCEEEE-ECCCHHHHH-TCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred HHHHHHH-CCCEEEE-EECCHHHHH-HCCEEEEECCCCCCCCCEEEEEECHHHHH
T ss_conf 9999986-6998999-958999998-59999997587425797788741104442
No 10
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=304.36 Aligned_cols=199 Identities=26% Similarity=0.365 Sum_probs=174.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++++. ...+|+|+|+.+++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCEEEEECCEEC
T ss_conf 899984899989-------------99999656899879989999968995599999999769988--971999999999
Q ss_pred CH-HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 80-01245599971488669999999999999982089899999999999999999199843323235999988898899
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 818 (1230)
.. ...++.++||+|+..++|.+||+|++.|....+ ....++.+++++++++.++|.+..+..+. .||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHH
T ss_pred CCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHH
T ss_conf 879977888899906875789999999999999775---99989999999999988599416539925-----7999999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 9999999996199776994999999999999999999998848-988999914898889998713
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 krl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
||++|||+|+.+|++++|||||++||...+..+.+.|+++.++ |.|+|+++|+.. ++..+.|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDr 203 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 203 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 99999999981999999989876799999999999999999867988999988999-99986999
Done!