BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000909
(1230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/1248 (33%), Positives = 661/1248 (52%), Gaps = 44/1248 (3%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLD-- 70
+FR+A D L M++GT+ AI G++ +++ + +S S+ + + + D
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 71 --------EVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVG 122
E+ + Y+ +G V++VA+++ W + RQ+ KIR K+ A++ QE+G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 123 FFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVA 182
+FD D E+ ++ D S I E + +K+ +F + F G W+L+LV
Sbjct: 158 WFDVHD---VGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVI 214
Query: 183 FPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYE 242
+L + I+ K L + K Y KA A+ E+ L++I+TV +F +++ ++RY
Sbjct: 215 LAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYN 274
Query: 243 AILDSTTKLGIKQGTAKGLAVGSTGL-SFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXX 301
L+ +LGIK+ +++G+ L +A +A WYG+ LV+ K + G++
Sbjct: 275 NNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSV 334
Query: 302 XXXXXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVK 361
P ++ F A AA +F ID P ID G D ++G +EF+++
Sbjct: 335 LIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIH 394
Query: 362 FSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXX 421
FSYPSR + +LK NLKVK+G++VALVG SG GKST + L+QR YD
Sbjct: 395 FSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDI 454
Query: 422 XXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPE 481
+ ++++R +G+VSQE LF T+I +NI +G+ D TMDE+ ++FI +LP
Sbjct: 455 RTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPH 514
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASL 541
++T VGERGA LSGGQKQ +NP ILLLDEATSALD+ESE +VQ ALD+A
Sbjct: 515 QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE 574
Query: 542 GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR------- 594
GRTT+V+AH+LSTVRNAD+IA D G +VE G H++L+ R G Y K+ Q
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM-REKGIYFKLVMTQTAGNEIEL 633
Query: 595 -QFSCDDQETIPETHVSSVTXXXXXXXXXXXXXPAIFA-------SPLPVIDSPQPVTYL 646
+C ++ I +SS S +D P
Sbjct: 634 GNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVP---- 689
Query: 647 PPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRT 706
P SF+R+L LN+ EW ++G AI G +QP +++ ++ F E Q R +
Sbjct: 690 PASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQ-RQNS 748
Query: 707 YXXXXXXXXXXXXAF--NLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSG 764
+F LQ + F G LTKR+R + + +L + +WFD+ +N++G
Sbjct: 749 NLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTG 808
Query: 765 ALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCF 824
AL +RL+N+A+ VK R++++ Q + + +I+ L+ W+L ++++A+ P+ +
Sbjct: 809 ALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAG 868
Query: 825 YTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQAR 884
+LS + K S +IA EA+ N R V S K ++ ++ + P + A
Sbjct: 869 VVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAM 928
Query: 885 KKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAG 944
KK+ + GI Q + + S+A F +G LV + ++ +V F +V + +
Sbjct: 929 KKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVS 988
Query: 945 SMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSR 1004
S D AK + + + + +I+++ I S T+G K + G ++ V F YP+R
Sbjct: 989 SFAPDYAKATVSASHIIRIIEKTPEIDSYS-----TQGLKPNMLEGNVQFSGVVFNYPTR 1043
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH 1064
P VL+ S+EVK G ++ LVG SGCGKSTV+ L++RFYD GSV +DG ++++L+V
Sbjct: 1044 PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQ 1103
Query: 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXX--XXXXXXXXXXXXXFISSLKDGYET 1122
W R +VSQEP+++ +I +NI +G FI SL D Y T
Sbjct: 1104 WLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163
Query: 1123 ECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTT 1182
G++G QLSGG P ILLLDEATSALD +SE+VVQEALD+ GRT
Sbjct: 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTC 1223
Query: 1183 IVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQS 1230
IV+AHRL+TI+ D I ++ +G+V E GT+ QL +G +F++ ++Q+
Sbjct: 1224 IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQA 1271
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/1248 (33%), Positives = 661/1248 (52%), Gaps = 44/1248 (3%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLD-- 70
+FR+A D L M++GT+ AI G++ +++ + +S S+ + + + D
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 71 --------EVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVG 122
E+ + Y+ +G V++VA+++ W + RQ+ KIR K+ A++ QE+G
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 123 FFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVA 182
+FD D E+ ++ D S I E + +K+ +F + F G W+L+LV
Sbjct: 158 WFDVHD---VGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVI 214
Query: 183 FPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYE 242
+L + I+ K L + K Y KA A+ E+ L++I+TV +F +++ ++RY
Sbjct: 215 LAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYN 274
Query: 243 AILDSTTKLGIKQGTAKGLAVGSTGL-SFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXX 301
L+ +LGIK+ +++G+ L +A +A WYG+ LV+ K + G++
Sbjct: 275 NNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSV 334
Query: 302 XXXXXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVK 361
P ++ F A AA +F ID P ID G D ++G +EF+++
Sbjct: 335 LIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIH 394
Query: 362 FSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXX 421
FSYPSR + +LK NLKVK+G++VALVG SG GKST + L+QR YD
Sbjct: 395 FSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDI 454
Query: 422 XXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPE 481
+ ++++R +G+VSQE LF T+I +NI +G+ D TMDE+ ++FI +LP
Sbjct: 455 RTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPH 514
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASL 541
++T VGERGA LSGGQKQ +NP ILLLDEATSALD+ESE +VQ ALD+A
Sbjct: 515 QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE 574
Query: 542 GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR------- 594
GRTT+V+AH+LSTVRNAD+IA D G +VE G H++L+ R G Y K+ Q
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM-REKGIYFKLVMTQTAGNEIEL 633
Query: 595 -QFSCDDQETIPETHVSSVTXXXXXXXXXXXXXPAIFA-------SPLPVIDSPQPVTYL 646
+C ++ I +SS S +D P
Sbjct: 634 GNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVP---- 689
Query: 647 PPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRT 706
P SF+R+L LN+ EW ++G AI G +QP +++ ++ F E Q R +
Sbjct: 690 PASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQ-RQNS 748
Query: 707 YXXXXXXXXXXXXAF--NLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSG 764
+F LQ + F G LTKR+R + + +L + +WFD+ +N++G
Sbjct: 749 NLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTG 808
Query: 765 ALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCF 824
AL +RL+N+A+ VK R++++ Q + + +I+ L+ W+L ++++A+ P+ +
Sbjct: 809 ALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAG 868
Query: 825 YTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQAR 884
+LS + K S +IA EA+ N R V S K ++ ++ + P + A
Sbjct: 869 VVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAM 928
Query: 885 KKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAG 944
KK+ + GI Q + + S+A F +G LV + ++ +V F +V + +
Sbjct: 929 KKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVS 988
Query: 945 SMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSR 1004
S D AK + + + + +I+++ I S T+G K + G ++ V F YP+R
Sbjct: 989 SFAPDYAKATVSASHIIRIIEKTPEIDSYS-----TQGLKPNMLEGNVQFSGVVFNYPTR 1043
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH 1064
P VL+ S+EVK G ++ LVG SGCGKSTV+ L++RFYD GSV +DG ++++L+V
Sbjct: 1044 PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQ 1103
Query: 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXX--XXXXXXXXXXXXXFISSLKDGYET 1122
W R +VSQEP+++ +I +NI +G FI SL D Y T
Sbjct: 1104 WLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163
Query: 1123 ECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTT 1182
G++G QLSGG P ILLLDEATSALD +SE+VVQEALD+ GRT
Sbjct: 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTC 1223
Query: 1183 IVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQS 1230
IV+AHRL+TI+ D I ++ +G+V E GT+ QL +G +F++ ++Q+
Sbjct: 1224 IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQA 1271
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 578 bits (1491), Expect = e-165, Method: Compositional matrix adjust.
Identities = 382/1272 (30%), Positives = 634/1272 (49%), Gaps = 61/1272 (4%)
Query: 6 NKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRI----------MNSLGF 55
NK +I ++R+ + LL+ +GT+ A+ G + + ++ +N+ G
Sbjct: 58 NKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGS 117
Query: 56 GQTQSQQNHHE-NFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLE 114
+ QN+ + +F +V + + + + + C+ +E+ ++R ++++
Sbjct: 118 TFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVK 177
Query: 115 AVLRQEVGFFDSQDA-TTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTY 173
++LRQE+ +FD+ + T +++ +++ + ++E +K+ + S FI+G +
Sbjct: 178 SILRQEISWFDTNHSGTLATKLFDNLER----VKEGTGDKIGMAFQYLSQFITGFIVAFT 233
Query: 174 FSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSA 233
SW+L+LV + + G K + + + Y KA +VE+ +SSI+TV S +
Sbjct: 234 HSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNG 293
Query: 234 ERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWY-GSHLVMFKGETGG 292
R ++RY ++ K G+ +G G++ G+ S I LA+Y G V G
Sbjct: 294 LRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFG 353
Query: 293 KIYAXXXXXXXXXXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVR 352
+ P+L A AAS I++ +DR P ID G +++
Sbjct: 354 DMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIK 413
Query: 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXX 412
G+I E+V F+YPSRPD +L+ NL+V AG++VALVG+SG GKST I+L+ R+YD
Sbjct: 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473
Query: 413 XXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXX 472
+ L+++R+ + +VSQE ALF +I++NI GK T +E++
Sbjct: 474 KITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV 532
FI+ LP GY T VG+RG LSGGQKQ +NP ILLLDEATSALD+ESE +V
Sbjct: 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHY------ 586
Q ALD+A+ GRTT+++AH+LST+RNADLI NG +VE+G H L+ + +Y
Sbjct: 594 QQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQ 653
Query: 587 --------AKMAKLQRQFSCDDQETIPETHVSSVTXXXXXXXXXXXXXPAIFASPLPVID 638
A K R+ S Q + E + + PVID
Sbjct: 654 TFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNG-PVID 712
Query: 639 SPQ------PVTYL----------PPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYA 682
+ ++ L + F +L P IG +A G + PTY+
Sbjct: 713 EKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYS 772
Query: 683 LTIGGMISAFFAKSHSEMQSRIRTYXXXXXXXXXXXXAFNLLQHYNFAYMGGRLTKRIRL 742
+ ++ FA + ++ S+ + + L + LT+ +R
Sbjct: 773 VFFTSFMNV-FAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRN 831
Query: 743 RMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMG 802
++ +L+ +FD QN+SG + +RL+ + +++ + R S ++ T ++ + +
Sbjct: 832 KLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLA 891
Query: 803 LVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSF 862
W++A+++IA+ P+ Y R + + S +IA+EA+ N R V +
Sbjct: 892 FFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQAL 951
Query: 863 GSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLV--QKGQ 920
+ F E + P K+A K++++ G+ G A + ++ + G L+
Sbjct: 952 AREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPT 1011
Query: 921 ISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGT 980
+ V + + + + + A S + AK + A +F +L + S I S AG+
Sbjct: 1012 MQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEK- 1070
Query: 981 RGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI 1040
+K+ GK+ + V FAYP RP+ +L+ S V+PG ++ LVG SGCGKSTV+ L+
Sbjct: 1071 -----KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL 1125
Query: 1041 QRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXX 1100
+RFYD G + +DG +++ L+ R A+VSQEP ++ +I +NI++G LD
Sbjct: 1126 ERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYG-LDPSSVTM 1184
Query: 1101 XXXXXXXXXX---XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEA 1157
FI+ L +G+ET G+RG QLSGG NP ILLLDEA
Sbjct: 1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEA 1244
Query: 1158 TSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTH 1217
TSALD +SE+VVQEALDR GRT IV+AHRLNT+ D IA+V++G ++E+GT+ QL
Sbjct: 1245 TSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304
Query: 1218 MRGAFFNLATLQ 1229
+GA++ L Q
Sbjct: 1305 EKGAYYKLTQKQ 1316
Score = 324 bits (830), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/502 (35%), Positives = 272/502 (54%), Gaps = 7/502 (1%)
Query: 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLL 788
+ Y+ ++ R+R ++ IL E +WFD N SG L ++L + VK D++ +
Sbjct: 160 YLYVAEQMNNRLRREFVKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGDKIGMA 217
Query: 789 VQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQI 848
Q S I+ +W+L +VM+AV P+ LC + +S+ + ++ ++
Sbjct: 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKV 277
Query: 849 AVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALD 908
E + + R V S L+ + A EE +K K GI G+ Q F+S+AL
Sbjct: 278 VEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALA 337
Query: 909 FWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968
F+ G V G ++ GD+ TF ++ + AG + L A + ++++LDR+
Sbjct: 338 FYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKP 397
Query: 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGK 1028
+I SS+AG K KI G I + V F YPSRPD +LR ++ V G +V LVG
Sbjct: 398 VIDSSSKAG-----RKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGS 452
Query: 1029 SGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI 1088
SGCGKST+I L+ R+YDV +G + +DG+DVR++++ + RK+ A+VSQEP ++ I +NI
Sbjct: 453 SGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENI 512
Query: 1089 VFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXN 1148
GK FI +L +GY T G+RG QLSGG N
Sbjct: 513 SLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN 572
Query: 1149 PTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
P ILLLDEATSALD +SE +VQ+ALD+ GRTTI++AHRL+TI+ D I +G+VVE
Sbjct: 573 PKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVE 632
Query: 1209 RGTYAQLTHMRGAFFNLATLQS 1230
G + L +G +++L T Q+
Sbjct: 633 VGDHRALMAQQGLYYDLVTAQT 654
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 286 bits (733), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 174/513 (33%), Positives = 275/513 (53%), Gaps = 11/513 (2%)
Query: 95 YCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKV 154
Y + +R V ++R ++LRQEV FFD T T E+IN +S DT+L+ ++E +
Sbjct: 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK---TRTGELINRLSSDTALLGRSVTENL 140
Query: 155 PIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKA 214
+ + G++ + S L+ + + I +IYG+YL L+K +A
Sbjct: 141 SDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQA 200
Query: 215 NAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWA 274
+ E+ + +++TV +F E I++Y + +D +L K+ A+ G+TGLS +
Sbjct: 201 TQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIV 260
Query: 275 FLAWYGSHLVMFKGE-TGGKIYAXXXXXXXXXXXXXXXXPELKYFTEASIAASRIFDRID 333
Y L+M T G++ + + A R+++ ++
Sbjct: 261 LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE 320
Query: 334 RVPEIDGEDTKGLVLDE--VRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGA 391
R P++ + G++L+E +G +EF++V F+YP+RP+ + +DF+L + +G ALVG
Sbjct: 321 REPKLPFNE--GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 378
Query: 392 SGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNI 451
SGSGKST ++L+ R YD L W+R ++G VSQE LF SI +NI
Sbjct: 379 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 438
Query: 452 MFGKLDA---TMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXX 508
+G D T +E+ FIR P+G+ T VGE+G LLSGGQKQ
Sbjct: 439 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498
Query: 509 XKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGC 568
KNP ILLLDEATSALD+E+E LVQ ALD+ GRT LV+AH+LST++NA+++AV+D G
Sbjct: 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGK 558
Query: 569 LVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQ 601
+ E G H +L+++ +G Y K+ Q S +
Sbjct: 559 ITEYGKHEELLSKPNGIYRKLMNKQSFISAAEN 591
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 181/597 (30%), Positives = 298/597 (49%), Gaps = 31/597 (5%)
Query: 648 PSFFRLLSLNAPEWKQ--GLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIR 705
P +LL L PE ++ +G L+ +V S+ + L G +I + + +
Sbjct: 5 PEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFL--GKIIDVIYTNPTVDYSDNLT 62
Query: 706 TYXXXXXXXXXXXXAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGA 765
A N ++ Y G R+ R+R + IL E A+FD+ + +G
Sbjct: 63 RLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR--TGE 120
Query: 766 LCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAV-VMIAVQPLTILCF 824
L +RLS++ +++ V + +S ++ + ++ + M V+ LA V+ V P++I+
Sbjct: 121 LINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAV 180
Query: 825 ----YTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPR 880
Y RK L+ V+ + + ++TQ+A E + N R V +FG ++ + +
Sbjct: 181 IYGRYLRK--LTKVTQDSLA---QATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVM 235
Query: 881 KQARKKSWLAGIGMGSAQCLTFMSWALDFWY-GGTLVQKGQISAGDVFKTFFILVSTGKV 939
+ ARK+++ A G A L+ L Y GG L+ ++ G++ G
Sbjct: 236 QLARKEAF-ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGIS 294
Query: 940 IAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKIS--GKIEMRRV 997
I S S+L KG A ++++L+R+ +P + G L + S G +E + V
Sbjct: 295 IGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN-------EGVILNEKSFQGALEFKNV 347
Query: 998 DFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD 1057
FAYP+RP+ + + FS+ + G+ LVG SG GKSTV+ L+ R YD G++ +DG D
Sbjct: 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 407
Query: 1058 VRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXX---XXXXXXXXXXXFIS 1114
+R+L+ W R VSQEP++++ +I +NI +G D FI
Sbjct: 408 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 467
Query: 1115 SLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALD 1174
+ G+ T GE+GV LSGG NP ILLLDEATSALD ++E +VQEALD
Sbjct: 468 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 527
Query: 1175 RIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQ-LTHMRGAFFNLATLQS 1230
R+M GRT +V+AHRL+TIK + +A++ G++ E G + + L+ G + L QS
Sbjct: 528 RLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 285 bits (729), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 173/505 (34%), Positives = 272/505 (53%), Gaps = 11/505 (2%)
Query: 95 YCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKV 154
Y + +R V ++R ++LRQEV FFD T T E+IN +S DT+L+ ++E +
Sbjct: 115 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK---TRTGELINRLSSDTALLGRSVTENL 171
Query: 155 PIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKA 214
+ + G++ + S L+ + + I +IYG+YL L+K +A
Sbjct: 172 SDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQA 231
Query: 215 NAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWA 274
+ E+ + +++TV +F E I++Y + +D +L K+ A+ G+TGLS +
Sbjct: 232 TQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIV 291
Query: 275 FLAWYGSHLVMFKGE-TGGKIYAXXXXXXXXXXXXXXXXPELKYFTEASIAASRIFDRID 333
Y L+M T G++ + + A R+++ ++
Sbjct: 292 LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE 351
Query: 334 RVPEIDGEDTKGLVLDE--VRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGA 391
R P++ + G++L+E +G +EF++V F+YP+RP+ + +DF+L + +G ALVG
Sbjct: 352 REPKLPFNE--GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 409
Query: 392 SGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNI 451
SGSGKST ++L+ R YD L W+R ++G VSQE LF SI +NI
Sbjct: 410 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 469
Query: 452 MFGKLDA---TMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXX 508
+G D T +E+ FIR P+G+ T VGE+G LLSGGQKQ
Sbjct: 470 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 529
Query: 509 XKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGC 568
KNP ILLLDEATSALD+E+E LVQ ALD+ GRT LV+AH LST++NA+++AV+D G
Sbjct: 530 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGK 589
Query: 569 LVEIGTHNDLINRIDGHYAKMAKLQ 593
+ E G H +L+++ +G Y K+ Q
Sbjct: 590 ITEYGKHEELLSKPNGIYRKLMNKQ 614
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 180/597 (30%), Positives = 297/597 (49%), Gaps = 31/597 (5%)
Query: 648 PSFFRLLSLNAPEWKQ--GLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIR 705
P +LL L PE ++ +G L+ +V S+ + L G +I + + +
Sbjct: 36 PEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFL--GKIIDVIYTNPTVDYSDNLT 93
Query: 706 TYXXXXXXXXXXXXAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGA 765
A N ++ Y G R+ R+R + IL E A+FD+ + +G
Sbjct: 94 RLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR--TGE 151
Query: 766 LCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAV-VMIAVQPLTILCF 824
L +RLS++ +++ V + +S ++ + ++ + M V+ LA V+ V P++I+
Sbjct: 152 LINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAV 211
Query: 825 ----YTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPR 880
Y RK L+ V+ + + ++TQ+A E + N R V +FG ++ + +
Sbjct: 212 IYGRYLRK--LTKVTQDSLA---QATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVM 266
Query: 881 KQARKKSWLAGIGMGSAQCLTFMSWALDFWY-GGTLVQKGQISAGDVFKTFFILVSTGKV 939
+ ARK+++ A G A L+ L Y GG L+ ++ G++ G
Sbjct: 267 QLARKEAF-ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGIS 325
Query: 940 IAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKIS--GKIEMRRV 997
I S S+L KG A ++++L+R+ +P + G L + S G +E + V
Sbjct: 326 IGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN-------EGVILNEKSFQGALEFKNV 378
Query: 998 DFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD 1057
FAYP+RP+ + + FS+ + G+ LVG SG GKSTV+ L+ R YD G++ +DG D
Sbjct: 379 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 438
Query: 1058 VRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXX---XXXXXXXXXXXFIS 1114
+R+L+ W R VSQEP++++ +I +NI +G D FI
Sbjct: 439 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 498
Query: 1115 SLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALD 1174
+ G+ T GE+GV LSGG NP ILLLDEATSALD ++E +VQEALD
Sbjct: 499 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 558
Query: 1175 RIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQ-LTHMRGAFFNLATLQS 1230
R+M GRT +V+AH L+TIK + +A++ G++ E G + + L+ G + L QS
Sbjct: 559 RLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 615
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 233 bits (593), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 143/504 (28%), Positives = 253/504 (50%), Gaps = 12/504 (2%)
Query: 727 YNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVS 786
Y +++ G++ +R R+ ++ ++FD++ S+G L SR++ ++ V S + +
Sbjct: 87 YCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ--STGTLLSRITYDSEQVASSSSGALI 144
Query: 787 LLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRST 846
+V+ +++ IM +W+L++++I + P+ + ++S N + T
Sbjct: 145 TVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVT 204
Query: 847 QIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWA 906
A + + H+ V FG + FD+ R Q K + I Q + ++ A
Sbjct: 205 TSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALA 264
Query: 907 LDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDR 966
+ ++AG + F +++ + + ++ + +G A ++F ILD
Sbjct: 265 FVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDS 324
Query: 967 QSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLV 1026
+ + +G R +++ +G +E R V F YP R D LR ++++ G +V LV
Sbjct: 325 EQ------EKDEGKR--VIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALV 375
Query: 1027 GKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRD 1086
G+SG GKST+ LI RFYD+++G + +DG D+RE + R ALVSQ ++ + +
Sbjct: 376 GRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN 435
Query: 1087 NIVFGKLDXXXXXXXXXXXXXXXXX-FISSLKDGYETECGERGVQLSGGXXXXXXXXXXX 1145
NI + + + FI+ + +G +T GE GV LSGG
Sbjct: 436 NIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL 495
Query: 1146 XXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGR 1205
+ IL+LDEATSALD +SE+ +Q ALD + RT++V+AHRL+TI+K D I +V DG
Sbjct: 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGV 555
Query: 1206 VVERGTYAQLTHMRGAFFNLATLQ 1229
+VERGT+ L RG + L +Q
Sbjct: 556 IVERGTHNDLLEHRGVYAQLHKMQ 579
Score = 229 bits (585), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 158/524 (30%), Positives = 254/524 (48%), Gaps = 22/524 (4%)
Query: 79 FVYLGLAVM--VVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVI 136
V +GL ++ + +++ YC S S + V+ +R + ++ V FFD Q +T ++
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ---STGTLL 125
Query: 137 NSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIY 196
+ I+ D+ + S + V + I Y+SW+LS++ ++ I +
Sbjct: 126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVV 185
Query: 197 GKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQG 256
K +SK G+ EQ L K V F + R++ + + G+K
Sbjct: 186 SKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMV 245
Query: 257 TAKGLA------VGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXXXXXXXXXXX 310
+A ++ + S L+F ++A S + T G I
Sbjct: 246 SASSISDPIIQLIASLALAFVLYA-----ASFPSVMDSLTAGTITVVFSSMIALMRPLKS 300
Query: 311 XXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDS 370
F A +F +D E +D V++ G++EF +V F+YP R D
Sbjct: 301 LTNVNAQFQRGMAACQTLFTILDSEQE---KDEGKRVIERATGDVEFRNVTFTYPGR-DV 356
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVR 430
L++ NLK+ AGK+VALVG SGSGKST +L+ RFYD L +R
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLR 416
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDA-TMDEVIXXXXXXXXHNFIRQLPEGYETKVGE 489
++ LVSQ LF ++ +NI + + + + +++ +FI ++ G +T +GE
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE 476
Query: 490 RGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVA 549
G LLSGGQ+Q ++ IL+LDEATSALD+ESE +Q ALD+ RT+LV+A
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536
Query: 550 HKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
H+LST+ AD I VV++G +VE GTHNDL+ G YA++ K+Q
Sbjct: 537 HRLSTIEKADEIVVVEDGVIVERGTHNDLLEH-RGVYAQLHKMQ 579
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 229 bits (583), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 141/507 (27%), Positives = 255/507 (50%), Gaps = 12/507 (2%)
Query: 724 LQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVAD 783
+ Y +++ G++ +R R+ ++ A+FD++ S+G L SR++ ++ V S +
Sbjct: 84 ISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ--STGTLLSRITYDSEQVASSSSG 141
Query: 784 RVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQN 843
+ +V+ +++ IM +W+L+++++ + P+ + S+S N
Sbjct: 142 ALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMG 201
Query: 844 RSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFM 903
+ T A + + H+ V FG + FD+ + R Q K + I Q + +
Sbjct: 202 QVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASL 261
Query: 904 SWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKI 963
+ A + ++AG + F +++ + + ++ + +G A ++F I
Sbjct: 262 ALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 321
Query: 964 LDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSV 1023
LD + + +G R + + +G +E R V F YP R + LR ++++ G +V
Sbjct: 322 LDSEQ------EKDEGKR--VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTV 372
Query: 1024 GLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGN 1083
LVG+SG GKST+ LI RFYD+++G + +DG D+RE + R ALVSQ ++
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 432
Query: 1084 IRDNIVFGKLDXXXXXXXXXXXXXXXXX-FISSLKDGYETECGERGVQLSGGXXXXXXXX 1142
+ +NI + + + FI+ + +G +T GE GV LSGG
Sbjct: 433 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492
Query: 1143 XXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVA 1202
+ IL+LDEATSALD +SE+ +Q ALD + RT++V+AHRL+TI++ D I +V
Sbjct: 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 552
Query: 1203 DGRVVERGTYAQLTHMRGAFFNLATLQ 1229
DG +VERGT+++L G + L +Q
Sbjct: 553 DGIIVERGTHSELLAQHGVYAQLHKMQ 579
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 156/524 (29%), Positives = 255/524 (48%), Gaps = 22/524 (4%)
Query: 79 FVYLGLAVM--VVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVI 136
V +GL ++ + +++ YC S S + V+ +R + ++ V FFD Q +T ++
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ---STGTLL 125
Query: 137 NSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIY 196
+ I+ D+ + S + V + I Y+SW+LS++ ++ I +
Sbjct: 126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVV 185
Query: 197 GKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQG 256
K +SK G+ EQ L K V F + R++ + + G+K
Sbjct: 186 SKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245
Query: 257 TAKGLA------VGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXXXXXXXXXXX 310
+A ++ + S L+F ++A S + T G I
Sbjct: 246 SASSISDPIIQLIASLALAFVLYA-----ASFPSVMDSLTAGTITVVFSSMIALMRPLKS 300
Query: 311 XXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDS 370
F A +F +D E +D V+D G++EF +V F+YP R +
Sbjct: 301 LTNVNAQFQRGMAACQTLFAILDSEQE---KDEGKRVIDRATGDLEFRNVTFTYPGR-EV 356
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVR 430
L++ NLK+ AGK+VALVG SGSGKST +L+ RFYD L +R
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDA-TMDEVIXXXXXXXXHNFIRQLPEGYETKVGE 489
++ LVSQ LF ++ +NI + + + + +++ +FI ++ G +T +GE
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476
Query: 490 RGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVA 549
G LLSGGQ+Q ++ IL+LDEATSALD+ESE +Q ALD+ RT+LV+A
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536
Query: 550 HKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
H+LST+ AD I VV++G +VE GTH++L+ + G YA++ K+Q
Sbjct: 537 HRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 161/536 (30%), Positives = 257/536 (47%), Gaps = 28/536 (5%)
Query: 73 EKCSLYFVYLGLAVMV-------VAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFF- 124
EK + +G+A+ + + F+ Y TS + + IR K + F+
Sbjct: 54 EKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA 113
Query: 125 DSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFP 184
++Q S VIN + + I L+ + I+ ++ I L+ + +L+L A
Sbjct: 114 NNQVGQVISRVINDVEQTKDFI---LTGLMNIW-LDCITIIIALSIMFFLDVKLTLAA-- 167
Query: 185 TLLLLIIPGMIYGKYLIY-----LSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIID 239
L I P I Y+ + L+++ + + + + + I V SF+ E
Sbjct: 168 ---LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAK 224
Query: 240 RYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAW-YGSHLVMFKGETGGKIYAXX 298
++ + +K + + I + G++L + T G + A
Sbjct: 225 NFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFV 284
Query: 299 XXXXXXXXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVR-GEIEF 357
T++ + R+F ID + D ++ G E++ G I+
Sbjct: 285 GYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE--DYDIKNGVGAQPIEIKQGRIDI 342
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXX 417
+HV F Y ++ +LKD NL ++ G++VA VG SG GKST I L+ RFYD
Sbjct: 343 DHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 401
Query: 418 XXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIR 477
+R ++GLV Q++ LF ++K+NI+ G+ AT +EV+ H+FI
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM 461
Query: 478 QLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALD 537
LP+GY+T+VGERG LSGGQKQ NP IL+LDEATSALD ESE+++Q ALD
Sbjct: 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD 521
Query: 538 QASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
S RTTL+VAH+LST+ +AD I V++NG +VE GTH +LI + G Y + +Q
Sbjct: 522 VLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
Score = 199 bits (506), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 140/518 (27%), Positives = 248/518 (47%), Gaps = 29/518 (5%)
Query: 723 LLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVA 782
++ Y + ++ IR ++ + A ++ N G + SR+ N+ K +
Sbjct: 79 FIRQYLAQWTSNKILYDIRKKLYNHLQALSARFY--ANNQVGQVISRVINDVEQTKDFIL 136
Query: 783 DRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQ 842
+ + + IA+ + + KL + + + P IL Y L ++ +
Sbjct: 137 TGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLT------R 190
Query: 843 NRSTQIA-VEAVINHRI-----VTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGS 896
RS +A V+ ++ R+ V SF + FD+ +A K + +
Sbjct: 191 ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAA 250
Query: 897 AQCLTFMSWALDFWYGGTLVQKGQISAGDV--FKTFFILV--STGKVIAEAGSMTSDLAK 952
+T + + G L G I+ G + F + L+ +++A ++T A
Sbjct: 251 INTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFA- 309
Query: 953 GSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQ 1012
++ VF+++D I +G ++ G+I++ V F Y +A +L+
Sbjct: 310 ---SMDRVFQLIDEDYDIK------NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKD 359
Query: 1013 FSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTAL 1072
++ ++ G +V VG SG GKST+I LI RFYDV G + +DG ++++ R L
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 1073 VSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLS 1132
V Q+ ++++ +++NI+ G+ FI +L GY+TE GERGV+LS
Sbjct: 420 VQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 1133 GGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTI 1192
GG NP IL+LDEATSALD++SE ++QEALD + RTT++VAHRL+TI
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI 539
Query: 1193 KKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQS 1230
D I ++ +G +VE GT+ +L +GA+ +L ++Q+
Sbjct: 540 THADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/505 (30%), Positives = 256/505 (50%), Gaps = 24/505 (4%)
Query: 91 FLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELL 150
+L+G S+ V ++R + E + R VGFFD T ++I+ + D I +L
Sbjct: 95 WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR---TPHGDIISRVINDVDNINNVL 151
Query: 151 SEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAY-- 208
+ F I LA + +R++++ + L I+P + ++ + Y
Sbjct: 152 GNSIIQFFSG----IVTLAGAVIMMFRVNVI-LSLVTLSIVPLTVLITQIVSSQTRKYFY 206
Query: 209 ---KEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIK----QGTAKGL 261
+ G+ N I+E+ +S + + F+ E + +++++ + +S K+G K G L
Sbjct: 207 ENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPL 266
Query: 262 AVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXXXXXXXXXXXXXPELKYFTEA 321
L FA+ ++ +G L + T G I + A
Sbjct: 267 MNMVNNLGFAL---ISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMA 323
Query: 322 SIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVK 381
+A RIF+ +D E D D + L EVRGEIEF++V FSY + VLKD +K
Sbjct: 324 LASAERIFEILDLEEEKD--DPDAVELREVRGEIEFKNVWFSYDKKKP--VLKDITFHIK 379
Query: 382 AGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRREMGLVSQEHA 441
G+ VALVG +GSGK+T + L+ RFYD ++ +R +G+V Q+
Sbjct: 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439
Query: 442 LFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQX 501
LF T++K+N+ +G AT +E+ +FI+ LPEGYET + + G LS GQ+Q
Sbjct: 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499
Query: 502 XXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLI 561
NP IL+LDEATS +D+++E +Q A+ + G+T++++AH+L+T++NADLI
Sbjct: 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLI 559
Query: 562 AVVDNGCLVEIGTHNDLINRIDGHY 586
V+ +G +VE+G H++LI + +Y
Sbjct: 560 IVLRDGEIVEMGKHDELIQKRGFYY 584
Score = 213 bits (541), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 137/494 (27%), Positives = 242/494 (48%), Gaps = 17/494 (3%)
Query: 739 RIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIA 798
R+R + EK+ +FD + G + SR+ N+ + +++ + + +A A
Sbjct: 111 RLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGA 168
Query: 799 MIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQ---IAVEAVIN 855
+IM V L++V +++ PLT+L +++ S F + Q Q I E +
Sbjct: 169 VIMMFRVNVILSLVTLSIVPLTVLI---TQIVSSQTRKYFYENQRVLGQLNGIIEEDISG 225
Query: 856 HRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTL 915
++ F K ++ FD E RK K +G+ + + +AL +GG L
Sbjct: 226 LTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWL 285
Query: 916 VQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQ 975
K I+ G + + + E + + + + +F+ILD + +
Sbjct: 286 ALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLE-------E 338
Query: 976 AGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST 1035
D +L+++ G+IE + V F+Y + VL+ + +KPG V LVG +G GK+T
Sbjct: 339 EKDDPDAVELREVRGEIEFKNVWFSYDKKKP--VLKDITFHIKPGQKVALVGPTGSGKTT 396
Query: 1036 VIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDX 1095
++ L+ RFYDV++G + VDG+D+R++ R +V Q+ ++++ +++N+ +G
Sbjct: 397 IVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA 456
Query: 1096 XXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLD 1155
FI L +GYET + G LS G NP IL+LD
Sbjct: 457 TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516
Query: 1156 EATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
EATS +D ++E+ +Q A+ ++M G+T+I++AHRLNTIK D I ++ DG +VE G + +L
Sbjct: 517 EATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDEL 576
Query: 1216 THMRGAFFNLATLQ 1229
RG ++ L T Q
Sbjct: 577 IQKRGFYYELFTSQ 590
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 210 bits (534), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 150/574 (26%), Positives = 272/574 (47%), Gaps = 22/574 (3%)
Query: 661 WKQGLIGSLSAIAVGSVQPTYALTI-GGMISAFFAKSHSEMQSRIRTYXXXXXXXXXXXX 719
+K GL+ S A+ + + TY +++ ++ F + S RI +
Sbjct: 23 YKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFL-RILPFMILGLMFVRGLS 81
Query: 720 AFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKS 779
F Y +++ G + ++R R+ + +FD+E S+G L SR++ ++ V
Sbjct: 82 GFA--SSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE--STGGLLSRITYDSEQVAG 137
Query: 780 LVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFV 839
+ + +V+ +++ + + +W+L++V+I V P+ +S N
Sbjct: 138 ATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQ 197
Query: 840 KAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQC 899
A T A + + H++V S+G + FD+ R+Q K I Q
Sbjct: 198 TAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQM 257
Query: 900 LTFMSWALDFWYGGTLVQKGQISAGD---VFKTFFILVSTGKVIAEAGSMTSDLAKGSTA 956
+ ++ + + +++ G VF F L+ K + S+TS+ +G A
Sbjct: 258 IASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALT---SVTSEFQRGMAA 314
Query: 957 VASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSME 1016
++F ++D ++ + +G + ++++G+++++ V F Y + L S
Sbjct: 315 CQTLFGLMDLET------ERDNGK--YEAERVNGEVDVKDVTFTYQGKEKP-ALSHVSFS 365
Query: 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQE 1076
+ G +V LVG+SG GKST+ L RFYDV+ GS+ +DG DVR+ + R+H ALVSQ
Sbjct: 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425
Query: 1077 PVIYAGNIRDNIVFG-KLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGX 1135
++ I +NI + + + FI ++ G +T GE G LSGG
Sbjct: 426 VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
Query: 1136 XXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL 1195
+ +L+LDEATSALD +SE+ +Q ALD + +T +V+AHRL+TI++
Sbjct: 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA 545
Query: 1196 DSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
D I +V +G ++ERG +A L GA+ L +Q
Sbjct: 546 DEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 163/552 (29%), Positives = 255/552 (46%), Gaps = 39/552 (7%)
Query: 54 GFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVM--VVAFLEGYCWSKTSERQVVKIRYK 111
GFG +S NFL L F+ LGL + + F YC S S V+++R +
Sbjct: 55 GFGNAES------NFLR-----ILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRR 103
Query: 112 YLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFS 171
+ V FFD + +T +++ I+ D+ + S + V + I L
Sbjct: 104 LFNHFMHMPVRFFDQE---STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLM 160
Query: 172 TYFSWRLSLVAFPTLLLLIIPGMIYG-----KYLIYLSKKAYKEYGKANAIVEQALSSIK 226
+ SW+LSLV L+++ P + + K +S+ G + EQ L K
Sbjct: 161 FWNSWQLSLV-----LIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHK 215
Query: 227 TVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLA--VGSTGLSFAIWA--FLAWYGSH 282
V S+ + R++ + +S + +K +A+ +A V S A++A FLA S
Sbjct: 216 VVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSI 275
Query: 283 LVMFKGETGGKIYAXXXXXXXXXXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGED 342
T +++ E F A +F +D E D
Sbjct: 276 RAELTPGTFTVVFSAMFGLMRPLKALTSVTSE---FQRGMAACQTLFGLMDLETERDNGK 332
Query: 343 TKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIAL 402
+ + V GE++ + V F+Y + + L + + GK+VALVG SGSGKST L
Sbjct: 333 YEA---ERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 403 VQRFYDAXXXXXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMD 461
RFYD +L +RR LVSQ LF +I +NI + + + T +
Sbjct: 389 FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTRE 448
Query: 462 EVIXXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEAT 521
++ FI +P+G +T +GE G LSGGQ+Q ++ +L+LDEAT
Sbjct: 449 QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT 508
Query: 522 SALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
SALD+ESE +Q ALD+ +T LV+AH+LST+ AD I VVD G ++E G H DL+ +
Sbjct: 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568
Query: 582 IDGHYAKMAKLQ 593
DG YA++ ++Q
Sbjct: 569 -DGAYAQLHRIQ 579
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 193 bits (490), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 152/256 (59%), Gaps = 3/256 (1%)
Query: 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXX 411
+G IEFE+V FSY ++ L+D + V G+++ALVG SG+GKST + L+ RFYD
Sbjct: 51 KGRIEFENVHFSYADGRET--LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 412 XXXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXX 471
+ +R +G+V Q+ LF +I DNI +G++ A DEV
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 472 XHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETL 531
H+ I PEGY T+VGERG LSGG+KQ K P I+LLDEATSALD+ +E
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 532 VQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAK 591
+Q +L + RTT+VVAH+LSTV NAD I V+ +GC+VE G H L++R G YA M +
Sbjct: 229 IQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQ 287
Query: 592 LQRQFSCDDQETIPET 607
LQ+ ++T P+T
Sbjct: 288 LQQGQEETSEDTKPQT 303
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 136/246 (55%), Gaps = 4/246 (1%)
Query: 984 KLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF 1043
+ QK G+IE V F+Y + L+ S V PG ++ LVG SG GKST++ L+ RF
Sbjct: 48 RFQK--GRIEFENVHFSYADGRE--TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103
Query: 1044 YDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXX 1103
YD+ G +R+DG D+ ++ R H +V Q+ V++ I DNI +G++
Sbjct: 104 YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAA 163
Query: 1104 XXXXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDV 1163
I + +GY T+ GERG++LSGG P I+LLDEATSALD
Sbjct: 164 AQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT 223
Query: 1164 QSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFF 1223
+E+ +Q +L ++ RTTIVVAHRL+T+ D I ++ DG +VERG + L G +
Sbjct: 224 SNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYA 283
Query: 1224 NLATLQ 1229
++ LQ
Sbjct: 284 DMWQLQ 289
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 183 bits (464), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 3/241 (1%)
Query: 354 EIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXX 412
+I F +++F Y +PDS ++L + NL +K G+ + +VG SGSGKST L+QRFY
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 413 XXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXX 472
W+RR++G+V Q++ L SI DNI ++++VI
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV 532
H+FI +L EGY T VGE+GA LSGGQ+Q NP IL+ DEATSALD ESE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592
+ + GRT +++AH+LSTV+NAD I V++ G +VE G H +L++ + Y+ + +L
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 593 Q 593
Q
Sbjct: 239 Q 239
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 133/241 (55%), Gaps = 4/241 (1%)
Query: 992 IEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I R + F Y +PD+ ++L ++ +K G +G+VG+SG GKST+ LIQRFY E G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXX 1110
V +DG D+ D +W R+ +V Q+ V+ +I DNI
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
FIS L++GY T GE+G LSGG NP IL+ DEATSALD +SE V+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFN-LATLQ 1229
+ +I GRT I++AHRL+T+K D I ++ G++VE+G + +L + ++ L LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 1230 S 1230
S
Sbjct: 240 S 240
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 183 bits (464), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 3/241 (1%)
Query: 354 EIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXX 412
+I F +++F Y +PDS ++L + NL +K G+ + +VG SGSGKST L+QRFY
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 413 XXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXX 472
W+RR++G+V Q++ L SI DNI ++++VI
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV 532
H+FI +L EGY T VGE+GA LSGGQ+Q NP IL+ DEATSALD ESE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592
+ + GRT +++AH+LSTV+NAD I V++ G +VE G H +L++ + Y+ + +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 593 Q 593
Q
Sbjct: 245 Q 245
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 133/241 (55%), Gaps = 4/241 (1%)
Query: 992 IEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I R + F Y +PD+ ++L ++ +K G +G+VG+SG GKST+ LIQRFY E G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXX 1110
V +DG D+ D +W R+ +V Q+ V+ +I DNI
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
FIS L++GY T GE+G LSGG NP IL+ DEATSALD +SE V+
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFN-LATLQ 1229
+ +I GRT I++AHRL+T+K D I ++ G++VE+G + +L + ++ L LQ
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Query: 1230 S 1230
S
Sbjct: 246 S 246
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 182 bits (463), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 144/241 (59%), Gaps = 3/241 (1%)
Query: 354 EIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXX 412
+I F +++F Y +PDS ++L + NL +K G+ + +VG SGSGKST L+QRFY
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 413 XXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXX 472
W+RR++G+V Q++ L SI DNI ++++VI
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV 532
H+FI +L EGY T VGE+GA LSGGQ+Q NP IL+ DEATSALD ESE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592
+ + GRT +++AH+LSTV+NAD I V++ G +VE G H +L++ + Y+ + +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 593 Q 593
Q
Sbjct: 241 Q 241
Score = 163 bits (412), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 126/225 (56%), Gaps = 3/225 (1%)
Query: 992 IEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I R + F Y +PD+ ++L ++ +K G +G+VG+SG GKST+ LIQRFY E G
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXX 1110
V +DG D+ D +W R+ +V Q+ V+ +I DNI
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
FIS L++GY T GE+G LSGG NP IL+ DEATSALD +SE V+
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
+ +I GRT I++AHRL+T+K D I ++ G++VE+G + +L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 144/241 (59%), Gaps = 3/241 (1%)
Query: 354 EIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXX 412
+I F +++F Y +PDS ++L + NL +K G+ + +VG SGSGKST L+QRFY
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 413 XXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXX 472
W+RR++G+V Q++ L SI DNI ++++VI
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV 532
H+FI +L EGY T VGE+GA LSGGQ+Q NP IL+ D+ATSALD ESE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592
+ + GRT +++AH+LSTV+NAD I V++ G +VE G H +L++ + Y+ + +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 593 Q 593
Q
Sbjct: 245 Q 245
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 126/225 (56%), Gaps = 3/225 (1%)
Query: 992 IEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I R + F Y +PD+ ++L ++ +K G +G+VG+SG GKST+ LIQRFY E G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXX 1110
V +DG D+ D +W R+ +V Q+ V+ +I DNI
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
FIS L++GY T GE+G LSGG NP IL+ D+ATSALD +SE V+
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
+ +I GRT I++AHRL+T+K D I ++ G++VE+G + +L
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 144/241 (59%), Gaps = 3/241 (1%)
Query: 354 EIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXX 412
+I F +++F Y +PDS ++L + NL +K G+ + +VG +GSGKST L+QRFY
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 413 XXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXX 472
W+RR++G+V Q++ L SI DNI ++++VI
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV 532
H+FI +L EGY T VGE+GA LSGGQ+Q NP IL+ DEATSALD ESE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592
+ + GRT +++AH+LSTV+NAD I V++ G +VE G H +L++ + Y+ + +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 593 Q 593
Q
Sbjct: 241 Q 241
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 126/225 (56%), Gaps = 3/225 (1%)
Query: 992 IEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I R + F Y +PD+ ++L ++ +K G +G+VG++G GKST+ LIQRFY E G
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXX 1110
V +DG D+ D +W R+ +V Q+ V+ +I DNI
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 121
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
FIS L++GY T GE+G LSGG NP IL+ DEATSALD +SE V+
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
+ +I GRT I++AHRL+T+K D I ++ G++VE+G + +L
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 2/239 (0%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXX 414
IEF V FSYP + + LK N + +G + ALVG +GSGKST L+ RFYDA
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77
Query: 415 XXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHN 474
+R +G+V Q+ LF +IK NI++GKLDAT +EVI ++
Sbjct: 78 IGGKNVNK-YNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQN 534
FI LP+ ++T VG +G LSGG++Q K+P I++ DEATS+LDS++E L Q
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 535 ALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
A++ RT +++AH+LST+ +A+ I +++ G +VE GTH DL+ +++G YA+M +Q
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL-KLNGEYAEMWNMQ 254
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 138/248 (55%), Gaps = 1/248 (0%)
Query: 983 SKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042
S +K IE V+F+YP + + L+ + + GT+ LVG +G GKST+ L+ R
Sbjct: 9 SHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR 68
Query: 1043 FYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXX 1102
FYD E G +++ G +V + + + R +V Q+ +++ I+ NI++GKLD
Sbjct: 69 FYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIK 127
Query: 1103 XXXXXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALD 1162
FI +L ++T G +G++LSGG +P I++ DEATS+LD
Sbjct: 128 ATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Query: 1163 VQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++E + Q+A++ + RT I++AHRL+TI +SI L+ G++VE+GT+ L + G +
Sbjct: 188 SKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEY 247
Query: 1223 FNLATLQS 1230
+ +QS
Sbjct: 248 AEMWNMQS 255
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 143/241 (59%), Gaps = 3/241 (1%)
Query: 354 EIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXX 412
+I F +++F Y +PDS ++L + NL +K G+ + +VG SGSGKST L+QRFY
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 413 XXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXX 472
W+RR++G+V Q++ L SI DNI ++++VI
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV 532
H+FI +L EGY T VGE+GA LSGGQ+Q NP IL+ DEATSALD ESE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592
+ + GRT +++A +LSTV+NAD I V++ G +VE G H +L++ + Y+ + +L
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 593 Q 593
Q
Sbjct: 239 Q 239
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 132/241 (54%), Gaps = 4/241 (1%)
Query: 992 IEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I R + F Y +PD+ ++L ++ +K G +G+VG+SG GKST+ LIQRFY E G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXX 1110
V +DG D+ D +W R+ +V Q+ V+ +I DNI
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
FIS L++GY T GE+G LSGG NP IL+ DEATSALD +SE V+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFN-LATLQ 1229
+ +I GRT I++A RL+T+K D I ++ G++VE+G + +L + ++ L LQ
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 1230 S 1230
S
Sbjct: 240 S 240
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 143/241 (59%), Gaps = 3/241 (1%)
Query: 354 EIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXX 412
+I F +++F Y +PDS ++L + NL +K G+ + +VG SGSGKST L+QRFY
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 413 XXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXX 472
W+RR++G+V Q++ L SI DNI ++++VI
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV 532
H+FI +L EGY T VGE+GA LSGGQ+Q NP IL+ DEATSALD ESE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592
+ + GRT +++A +LSTV+NAD I V++ G +VE G H +L++ + Y+ + +L
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 593 Q 593
Q
Sbjct: 245 Q 245
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 132/241 (54%), Gaps = 4/241 (1%)
Query: 992 IEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I R + F Y +PD+ ++L ++ +K G +G+VG+SG GKST+ LIQRFY E G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXX 1110
V +DG D+ D +W R+ +V Q+ V+ +I DNI
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
FIS L++GY T GE+G LSGG NP IL+ DEATSALD +SE V+
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFN-LATLQ 1229
+ +I GRT I++A RL+T+K D I ++ G++VE+G + +L + ++ L LQ
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Query: 1230 S 1230
S
Sbjct: 246 S 246
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 215/459 (46%), Gaps = 23/459 (5%)
Query: 132 TSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLII 191
TS +I ++ D + +Q L+ + I V +F+ G+ + + +LS ++L+ +I
Sbjct: 119 TSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS-----SVLIFLI 173
Query: 192 PGMIYGKYLIYLSKKAYKEYGK-------ANAIVEQALSSIKTVYSFSAERRIIDRYEAI 244
P ++ ++L+KK + K N +V + L ++ V +F E + +
Sbjct: 174 PPIVL--LFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKA 231
Query: 245 LDSTTKLGIKQGTAKGLAVGSTGLSFAIWAF----LAWYGSHLVMFKGETGGKIYAXXXX 300
+S + I +A L V + L I + W+G LV G I A
Sbjct: 232 NESLRRSII---SAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNY 288
Query: 301 XXXXXXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHV 360
L + AS +A R+ + ++ P I+ D L L V G + FE+V
Sbjct: 289 LMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN-ALALPNVEGSVSFENV 347
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXX 420
+F Y D VL N VK G VA++G +GSGKST + L+ R D
Sbjct: 348 EFRYFENTDP-VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406
Query: 421 XXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLP 480
++LK +R + V QE LF +IK+N+ +G+ DAT DE++ H+FI LP
Sbjct: 407 VRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLP 466
Query: 481 EGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQAS 540
EGY+++V G SGGQKQ K P +L+LD+ TS++D +E + + L + +
Sbjct: 467 EGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT 526
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLI 579
G TT ++ K+ T AD I V+ G + GTH +L+
Sbjct: 527 KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/480 (25%), Positives = 224/480 (46%), Gaps = 17/480 (3%)
Query: 740 IRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAM 799
+R + K+L+F + + SS L +RL+N+ + +++LV + ++V+ +
Sbjct: 98 LRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 800 IMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRST----QIAVEAVIN 855
+M + + KL+ V+I + P +L F V L+ + ST ++ E ++
Sbjct: 156 VMAVSINVKLSSVLIFLIPPIVLLF----VWLTKKGNPLFRKIQESTDEVNRVVRENLLG 211
Query: 856 HRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTL 915
R+V +F + F +A E R+ L + + M W+GG L
Sbjct: 212 VRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVL 271
Query: 916 VQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQ 975
V+ Q+ G + L+ + G++ + + + S + V ++L+ + P +
Sbjct: 272 VRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEK---PAIEE 328
Query: 976 AGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST 1035
A + L + G + V+F Y D VL + VKPG+ V ++G++G GKST
Sbjct: 329 ADNAL---ALPNVEGSVSFENVEFRYFENTDP-VLSGVNFSVKPGSLVAVLGETGSGKST 384
Query: 1036 VIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDX 1095
++ LI R D E+G V VD +DVR + + R H + V QE V+++G I++N+ +G+ D
Sbjct: 385 LMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDA 444
Query: 1096 XXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLD 1155
FI SL +GY++ G SGG P +L+LD
Sbjct: 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD 504
Query: 1156 EATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
+ TS++D +E+ + + L R G TT ++ ++ T D I ++ +G+V GT+ +L
Sbjct: 505 DCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 124/226 (54%), Gaps = 5/226 (2%)
Query: 995 RRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVD 1054
R VDFAY +LR S E +P + + G SG GKST+ L++RFY G + +D
Sbjct: 5 RHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1055 GMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDXXXXXXXXXXXXXXXXXFI 1113
G + + + +R VSQ+ I AG IR+N+ +G + D F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1114 SSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEAL 1173
++ D TE GERGV++SGG NP IL+LDEAT++LD +SE +VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1174 DRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL--TH 1217
D +M GRTT+V+AHRL+TI D I + G++ G + +L TH
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
Score = 156 bits (394), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 3/222 (1%)
Query: 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXX 418
HV F+Y +L+D + + + +A G SG GKST +L++RFY
Sbjct: 6 HVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63
Query: 419 XXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIXXXXXXXXHNFIR 477
+ L+ R ++G VSQ+ A+ +I++N+ +G + D T +++ +F+
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 478 QLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALD 537
+P+ T+VGERG +SGGQ+Q +NP IL+LDEAT++LDSESE++VQ ALD
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 538 QASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLI 579
GRTTLV+AH+LST+ +AD I ++ G + G HN+L+
Sbjct: 184 SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 135/241 (56%), Gaps = 3/241 (1%)
Query: 350 EVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA 409
+ G ++F+ V F+YP+RPD +VL+ ++ G+ ALVG +GSGKST AL+Q Y
Sbjct: 10 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 410 XXXXXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIXXXX 468
+ +++ R++ V QE +FG S+++NI +G TM+E+
Sbjct: 70 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 129
Query: 469 XXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSES 528
H+FI LP+GY+T+V E G+ LSGGQ+Q + P +L+LD+ATSALD+ S
Sbjct: 130 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Query: 529 ETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHY 586
+ V+ L ++ R+ L++ LS V AD I ++ G + E GTH L+ + ++
Sbjct: 190 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 249
Query: 587 A 587
A
Sbjct: 250 A 250
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 7/243 (2%)
Query: 988 ISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE 1047
+ G ++ + V FAYP+RPD LVL+ + ++PG LVG +G GKSTV L+Q Y
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 1048 QGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDXXXXXXXXXXXX 1106
G + +DG + + + + + A V QEP ++ ++++NI +G
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 1107 XXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALD---- 1162
FIS L GY+TE E G QLSGG P +L+LD+ATSALD
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 1163 VQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+Q EQ++ E+ +R R+ +++ L+ +++ D I + G + E GT+ QL +G +
Sbjct: 191 LQVEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 248
Query: 1223 FNL 1225
+ +
Sbjct: 249 WAM 251
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 128/244 (52%), Gaps = 4/244 (1%)
Query: 351 VRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAX 410
++G ++F+ V F+YP+ P+ VL+ + GK ALVG +GSGKST AL+Q Y
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 411 XXXXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIXXXXX 469
++ ++ V QE LFG S ++NI +G TM+E+
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 470 XXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESE 529
H+FI P+GY+T+VGE G LSGGQ+Q + P +L+LD+ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 530 TLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587
VQ L ++ RT L++ H+LS A I + G + E GTH L+ R G Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 588 KMAK 591
M +
Sbjct: 252 SMVE 255
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 118/239 (49%), Gaps = 3/239 (1%)
Query: 987 KISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV 1046
+ G ++ + V FAYP+ P+ VL+ + + PG LVG +G GKSTV L+Q Y
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1047 EQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDXXXXXXXXXXX 1105
G V +DG + + D H+ A V QEP+++ + R+NI +G
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1106 XXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQS 1165
FIS GY+TE GE G QLSGG P +L+LD+ATSALD +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 1166 EQVVQEAL--DRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+ VQ L RT +++ H+L+ ++ I + +G V E+GT+ QL G +
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 145 bits (367), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 4/244 (1%)
Query: 351 VRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAX 410
++G ++F+ V F+YP+ P+ VL+ + GK ALVG +GSGKST AL+Q Y
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 411 XXXXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIXXXXX 469
++ ++ V QE LFG S ++NI +G TM+E+
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 470 XXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESE 529
H+FI P+GY+T+VGE G LSGGQ+Q + P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 530 TLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587
VQ L ++ RT L++ +LS A I + G + E GTH L+ R G Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 588 KMAK 591
M +
Sbjct: 252 SMVE 255
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 116/239 (48%), Gaps = 3/239 (1%)
Query: 987 KISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV 1046
+ G ++ + V FAYP+ P+ VL+ + + PG LVG +G GKSTV L+Q Y
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1047 EQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDXXXXXXXXXXX 1105
G V +DG + + D H+ A V QEP+++ + R+NI +G
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1106 XXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQS 1165
FIS GY+TE GE G QLSGG P +L+LD ATSALD +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 1166 EQVVQEAL--DRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+ VQ L RT +++ +L+ ++ I + +G V E+GT+ QL G +
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 4/244 (1%)
Query: 351 VRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAX 410
++G ++F+ V F+YP+ P+ VL+ + GK ALVG +GSGKST AL+Q Y
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 411 XXXXXXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIXXXXX 469
++ ++ V QE LFG S ++NI +G TM+E+
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 470 XXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESE 529
H+FI P+GY+T+VGE G L+ GQ+Q + P +L+LD ATSALD+ ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 530 TLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587
VQ L ++ RT L++ +LS A I + G + E GTH L+ R G Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 588 KMAK 591
M +
Sbjct: 252 SMVE 255
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 115/239 (48%), Gaps = 3/239 (1%)
Query: 987 KISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV 1046
+ G ++ + V FAYP+ P+ VL+ + + PG LVG +G GKSTV L+Q Y
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1047 EQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDXXXXXXXXXXX 1105
G V +DG + + D H+ A V QEP+++ + R+NI +G
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1106 XXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQS 1165
FIS GY+TE GE G QL+ G P +L+LD ATSALD +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 1166 EQVVQEAL--DRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+ VQ L RT +++ +L+ ++ I + +G V E+GT+ QL G +
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 20/235 (8%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I +R F + +R D L + + G V +VG+ GCGKS+++ + D +G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDXXXXXXXXXXXXXXXX 1110
+ G A V Q+ I ++R+NI+FG +L+
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
I L G TE GE+GV LSGG N I L D+ SA+D + +
Sbjct: 110 LEI--LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 1171 EAL---DRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
E + ++ +T I+V H ++ + ++D I +++ G++ E G+Y +L GAF
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAF 222
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 21/241 (8%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXX 414
I + F++ +R D L + G VA+VG G GKS+ ++ + D
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 415 XXXXXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIXXXXXXXXH 473
Q W++ + S+++NI+FG +L+ +
Sbjct: 63 AIKGSVAYVPQQAWIQND-------------SLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSE-SETLV 532
+ LP G T++GE+G LSGGQKQ N I L D+ SA+D+ + +
Sbjct: 110 --LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 533 QNALDQASL--GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMA 590
+N + + +T ++V H +S + D+I V+ G + E+G++ +L+ R DG +A+
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226
Query: 591 K 591
+
Sbjct: 227 R 227
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 26/216 (12%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDAXXXXXXXXXXXXXXLQLKWV 429
L + +L V AG+ ++GASG+GKST + L++R + +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 430 RREMGLVSQEHALFGT-SIKDNIMFG-KLDAT-MDEVIXXXXXXXXHNFIRQLPE----- 481
RR++G++ Q L + ++ N+ +LD T DEV R++ E
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK------------RRVTELLSLV 128
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQAS- 540
G K + LSGGQKQ NP +LL DEATSALD + + L +
Sbjct: 129 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 541 -LGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGT 574
LG T L++ H++ V R D +AV+ NG L+E T
Sbjct: 189 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 18/216 (8%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL---DVHWY 1066
L S+ V G G++G SG GKST+I + +GSV VDG ++ L ++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGK----LDXXXXXXXXXXXXXXXXXFISSLKDGYET 1122
R+ ++ Q + + VFG L+ + L D +++
Sbjct: 81 RRQIGMIFQ----HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 136
Query: 1123 ECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRI--MMGR 1180
LSGG NP +LL DEATSALD + + + E L I +G
Sbjct: 137 YPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
T +++ H ++ +K++ D +A++++G ++E+ T +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 26/216 (12%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDAXXXXXXXXXXXXXXLQLKWV 429
L + +L V AG+ ++GASG+GKST + L++R + +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 430 RREMGLVSQEHALFGT-SIKDNIMFG-KLDAT-MDEVIXXXXXXXXHNFIRQLPE----- 481
RR++G++ Q L + ++ N+ +LD T DEV R++ E
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK------------RRVTELLSLV 151
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQAS- 540
G K + LSGGQKQ NP +LL D+ATSALD + + L +
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 541 -LGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGT 574
LG T L++ H++ V R D +AV+ NG L+E T
Sbjct: 212 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 18/216 (8%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL---DVHWY 1066
L S+ V G G++G SG GKST+I + +GSV VDG ++ L ++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGK----LDXXXXXXXXXXXXXXXXXFISSLKDGYET 1122
R+ ++ Q + + VFG L+ + L D +++
Sbjct: 104 RRQIGMIFQ----HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 1123 ECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRI--MMGR 1180
LSGG NP +LL D+ATSALD + + + E L I +G
Sbjct: 160 YPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
T +++ H ++ +K++ D +A++++G ++E+ T +++
Sbjct: 216 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 15/212 (7%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRRE 432
L + NLK+K G+ +AL+G SGSGKST + + Y L K R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 433 MGLVSQEHALFG-TSIKDNIMFG--KLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGE 489
+GLV Q AL+ ++ NI F A +E+ I +L Y +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--- 133
Query: 490 RGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLV 547
LSGGQ+Q K P +LLLDE S LD+ V+ L Q LG TT+
Sbjct: 134 ----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 548 VAH-KLSTVRNADLIAVVDNGCLVEIGTHNDL 578
V H + + AD IAV+ G ++++GT +++
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 17/209 (8%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
L ++++K G + L+G SG GKST++ I Y G + D DV EL ++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 1070 TALVSQEPVIYAG-NIRDNIVFGKLDXXXXXXX---XXXXXXXXXXFISSLKDGYETECG 1125
LV Q +Y + NI F L+ I L + Y
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAF-PLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW--- 132
Query: 1126 ERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTI 1183
QLSGG P +LLLDE S LD V+ L R+ +G TT+
Sbjct: 133 ----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188
Query: 1184 VVAH-RLNTIKKLDSIALVADGRVVERGT 1211
V H + + D IA++ +G +++ GT
Sbjct: 189 YVTHDQAEALAMADRIAVIREGEILQVGT 217
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDAXXXXXXXXXXXXXXLQLKW 428
VLK N+ ++ G+ V ++G SGSGKST + L++ F D L
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIIIDGINLKAKDTNLNK 97
Query: 429 VRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKV 487
VR E+G+V Q LF ++ +NI + + + ++ G + K
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVR--KWPREKAEAKAMELLDKV--GLKDKA 153
Query: 488 GERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQ-ASLGRTTL 546
LSGGQ Q P I+L DE TSALD E V + + Q A+ G T +
Sbjct: 154 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMV 213
Query: 547 VVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
VV H++ R D + +D G ++E G DL +R
Sbjct: 214 VVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 9/212 (4%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW--Y 1066
VL+ ++ ++ G V ++G SG GKST + + D ++G + +DG++++ D +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1067 RKHTALVSQEPVIYAG-NIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECG 1125
R+ +V Q ++ + +NI + LKD
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 1126 ERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIV 1184
LSGG P I+L DE TSALD + V + ++ G T +V
Sbjct: 159 ----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 214
Query: 1185 VAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
V H + +++ D + + G ++E G L
Sbjct: 215 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 96/230 (41%), Gaps = 39/230 (16%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDAXXXXXXXXXXXXXXLQLKW 428
VLK N+ ++ G+ V ++G SGSGKST + L++ F D L
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIIIDGINLKAKDTNLNK 76
Query: 429 VRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPE------ 481
VR E+G+V Q LF ++ +NI + +R+ P
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLAPMK------------------VRKWPREKAEAK 118
Query: 482 --------GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQ 533
G + K LSGGQ Q P I+L DE TSALD E V
Sbjct: 119 AMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL 178
Query: 534 NALDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ + Q A+ G T +VV H++ R D + +D G ++E G DL +R
Sbjct: 179 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 9/212 (4%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW--Y 1066
VL+ ++ ++ G V ++G SG GKST + + D ++G + +DG++++ D +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1067 RKHTALVSQEPVIYAG-NIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECG 1125
R+ +V Q ++ + +NI + LKD
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 1126 ERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIV 1184
LSGG P I+L DE TSALD + V + ++ G T +V
Sbjct: 138 ----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 193
Query: 1185 VAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
V H + +++ D + + G ++E G L
Sbjct: 194 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 26/216 (12%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDAXXXXXXXXXXXXXXLQLKWV 429
L + +L V AG+ ++GASG+GKST + L++R + +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 430 RREMGLVSQEHALFGT-SIKDNIMFG-KLDAT-MDEVIXXXXXXXXHNFIRQLPE----- 481
RR++G + Q L + ++ N+ +LD T DEV R++ E
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK------------RRVTELLSLV 151
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQAS- 540
G K + LSGGQKQ NP +LL D+ATSALD + + L +
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 541 -LGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGT 574
LG T L++ H+ V R D +AV+ NG L+E T
Sbjct: 212 RLGLTILLITHEXDVVKRICDCVAVISNGELIEQDT 247
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL---DVHWY 1066
L S+ V G G++G SG GKST+I + +GSV VDG ++ L ++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGK----LDXXXXXXXXXXXXXXXXXFISSLKDGYET 1122
R+ + Q + + VFG L+ + L D +++
Sbjct: 104 RRQIGXIFQ----HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 1123 ECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRI--MMGR 1180
LSGG NP +LL D+ATSALD + + + E L I +G
Sbjct: 160 YPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
T +++ H + +K++ D +A++++G ++E+ T +++
Sbjct: 216 TILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV 251
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 10/219 (4%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
+L S + PG VGL+G++G GKST++ R + E G +++DG+ + + +RK
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRK 94
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECG--- 1125
++ Q+ I++G R N LD + S+ + + +
Sbjct: 95 AFGVIPQKVFIFSGTFRKN-----LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVL 149
Query: 1126 -ERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIV 1184
+ G LS G ILLLDE ++ LD + Q+++ L + T I+
Sbjct: 150 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVIL 209
Query: 1185 VAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFF 1223
R+ + + D ++ + +V + + +L H F
Sbjct: 210 CEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 2/194 (1%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRR 431
+L++ + + G+ V L+G +GSGKST ++ R + +W R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQW-RK 94
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERG 491
G++ Q+ +F + + N+ + E+ + I Q P + + + G
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQ-EIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
Query: 492 ALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHK 551
+LS G KQ ILLLDE ++ LD + +++ L QA T ++ +
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213
Query: 552 LSTVRNADLIAVVD 565
+ + D V++
Sbjct: 214 IEAMLECDQFLVIE 227
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 15/227 (6%)
Query: 997 VDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM 1056
V F++ VL+ ++ ++ G + + G +G GK++++ LI + +G ++ G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1057 DVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSL 1116
+ SQ I G I++NI+FG + I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKF 146
Query: 1117 KDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDV-QSEQVVQEALDR 1175
+ T GE GV LSGG + + LLD LDV EQV + + +
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 1176 IMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+M +T I+V ++ ++K D I ++ G GT+++L +R F
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 253
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXX 418
+V FS+ + VLK+ NL ++ G+ +A+ G++GSGK++ + L+ +A
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 419 XXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDE--VIXXXXXXXXHNFI 476
Q W+ + GT IK+NI+FG + DE I
Sbjct: 100 RVSFCSQFSWI------------MPGT-IKENIIFG---VSYDEYRYKSVVKACQLQQDI 143
Query: 477 RQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV-QNA 535
+ E T +GE G LSGGQ+ K+ + LLD LD +E V ++
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 536 LDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+ + +T ++V K+ +R AD I ++ G GT ++L
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 15/227 (6%)
Query: 997 VDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM 1056
V F++ VL+ ++ ++ G + + G +G GK++++ LI + +G ++ G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1057 DVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSL 1116
+ SQ I G I++NI+FG + I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKF 146
Query: 1117 KDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDV-QSEQVVQEALDR 1175
+ T GE GV LSGG + + LLD LDV EQV + + +
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 1176 IMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+M +T I+V ++ ++K D I ++ G GT+++L +R F
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 253
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXX 418
+V FS+ + VLK+ NL ++ G+ +A+ G++GSGK++ + L+ +A
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 419 XXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDE--VIXXXXXXXXHNFI 476
Q W+ + GT IK+NI+FG + DE I
Sbjct: 100 RVSFCSQFSWI------------MPGT-IKENIIFG---VSYDEYRYKSVVKACQLQQDI 143
Query: 477 RQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV-QNA 535
+ E T +GE G LSGGQ+ K+ + LLD LD +E V ++
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 536 LDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+ + +T ++V K+ +R AD I ++ G GT ++L
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 35/242 (14%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXX 414
IEF V+ YP S+ + + +++ G+ V L+G SGSGK+T + L+
Sbjct: 15 IEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 415 XXXXXXXXXLQLKWVRREMGLVSQEHALF-GTSIKDNIMFG---------KLDATMDEVI 464
L + +R +GLV Q +ALF ++ DN+ FG ++DA + E++
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 465 XXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSAL 524
F+R E Y + LSGGQ+Q P +LL DE +A+
Sbjct: 131 ---------RFMRL--ESYANRFPHE---LSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
Query: 525 DS----ESETLVQNALDQASLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVEIGTHNDLI 579
D+ E T V+ D+ +G T++ V H + + AD + V+ G + + GT ++
Sbjct: 177 DTQIRRELRTFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVY 234
Query: 580 NR 581
+
Sbjct: 235 EK 236
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 13/236 (5%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE V+ YP A +R S +++ G VGL+G SG GK+T++ LI +G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDXXXXXXXXXXXXXXXX 1110
+ G V +L +++ LV Q ++ + DN+ FG +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
F+ E+ +LSGG P +LL DE +A+D Q + ++
Sbjct: 131 RFMR-----LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 1171 EALDRIM--MGRTTIVVAH-RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFF 1223
+ ++ MG T++ V H + ++ D + ++ +G V + GT ++ G F
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 377 NLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRREMGLV 436
+ +VK G+ VAL+G SG GK+T + ++ Y + K+ RE+G+V
Sbjct: 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGMV 80
Query: 437 SQEHALFG-TSIKDNIMFGKLDA---TMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGA 492
Q +AL+ ++ +NI F L A + DEV I L + T+
Sbjct: 81 FQNYALYPHMTVFENIAF-PLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ------ 133
Query: 493 LLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAH 550
LSGGQ+Q K P +LL DE S LD+ +++ + Q LG T++ V H
Sbjct: 134 -LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
Query: 551 -KLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+ + A IAV + G LV+ GT +++
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 15/204 (7%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
S EVK G V L+G SGCGK+T + ++ Y G + D DV D+ + +V
Sbjct: 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREVGMV 80
Query: 1074 SQEPVIYAG-NIRDNIVFG--KLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQ 1130
Q +Y + +NI F I +L D T Q
Sbjct: 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT-------Q 133
Query: 1131 LSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAH- 1187
LSGG P +LL DE S LD +++ + + +G T++ V H
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 1188 RLNTIKKLDSIALVADGRVVERGT 1211
+ + IA+ G++V+ GT
Sbjct: 194 QAEAMTMASRIAVFNQGKLVQYGT 217
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 15/227 (6%)
Query: 997 VDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM 1056
V F++ VL+ ++ ++ G + + G +G GK++++ LI + +G ++ G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1057 DVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSL 1116
+ SQ I G I++NI+ G + I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDITKF 146
Query: 1117 KDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDV-QSEQVVQEALDR 1175
+ T GE GV LSGG + + LLD LDV EQV + + +
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 1176 IMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+M +T I+V ++ ++K D I ++ G GT+++L +R F
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 253
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXX 418
+V FS+ + VLK+ NL ++ G+ +A+ G++GSGK++ + L+ +A
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 419 XXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDE--VIXXXXXXXXHNFI 476
Q W+ + GT IK+NI+ G + DE I
Sbjct: 100 RVSFCSQFSWI------------MPGT-IKENIISG---VSYDEYRYKSVVKACQLQQDI 143
Query: 477 RQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV-QNA 535
+ E T +GE G LSGGQ+ K+ + LLD LD +E V ++
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 536 LDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+ + +T ++V K+ +R AD I ++ G GT ++L
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 15/227 (6%)
Query: 997 VDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM 1056
V F++ VL+ ++ ++ G + + G +G GK++++ LI + +G ++ G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1057 DVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSL 1116
+ SQ I G I++NI+ G + I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDITKF 146
Query: 1117 KDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDV-QSEQVVQEALDR 1175
+ T GE GV LSGG + + LLD LDV EQV + + +
Sbjct: 147 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 206
Query: 1176 IMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+M +T I+V ++ ++K D I ++ G GT+++L +R F
Sbjct: 207 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 253
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXX 418
+V FS+ + VLK+ NL ++ G+ +A+ G++GSGK++ + L+ +A
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 419 XXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDE--VIXXXXXXXXHNFI 476
Q W+ + GT IK+NI+ G + DE I
Sbjct: 100 RVSFCSQFSWI------------MPGT-IKENIIRG---VSYDEYRYKSVVKACQLQQDI 143
Query: 477 RQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV-QNA 535
+ E T +GE G LSGGQ+ K+ + LLD LD +E V ++
Sbjct: 144 TKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 536 LDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+ + +T ++V K+ +R AD I ++ G GT ++L
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 95/215 (44%), Gaps = 15/215 (6%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ + +++ G + + G +G GK++++ +I + +G ++ G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
+ SQ I G I++NI+FG + IS + GE G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LSGG + + LLD LDV +E ++ + + ++M +T I+V
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++ +KK D I ++ +G GT+++L +++ F
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 235
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 19/212 (8%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRR 431
VLKD N K++ G+ +A+ G++G+GK++ + ++ + Q W+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI-- 92
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXH--NFIRQLPEGYETKVGE 489
+ GT IK+NI+FG + DE I + E +GE
Sbjct: 93 ----------MPGT-IKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 138
Query: 490 RGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESET-LVQNALDQASLGRTTLVV 548
G LSGGQ+ K+ + LLD LD +E + ++ + + +T ++V
Sbjct: 139 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 198
Query: 549 AHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
K+ ++ AD I ++ G GT ++L N
Sbjct: 199 TSKMEHLKKADKILILHEGSSYFYGTFSELQN 230
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 95/215 (44%), Gaps = 15/215 (6%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ + +++ G + + G +G GK++++ +I + +G ++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
+ SQ I G I++NI+FG + IS + GE G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LSGG + + LLD LDV +E ++ + + ++M +T I+V
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++ +KK D I ++ +G GT+++L +++ F
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 19/212 (8%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRR 431
VLKD N K++ G+ +A+ G++G+GK++ + ++ + Q W+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI-- 80
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDE--VIXXXXXXXXHNFIRQLPEGYETKVGE 489
+ GT IK+NI+FG + DE I + E +GE
Sbjct: 81 ----------MPGT-IKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 126
Query: 490 RGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESET-LVQNALDQASLGRTTLVV 548
G LSGGQ+ K+ + LLD LD +E + ++ + + +T ++V
Sbjct: 127 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 186
Query: 549 AHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
K+ ++ AD I ++ G GT ++L N
Sbjct: 187 TSKMEHLKKADKILILHEGSSYFYGTFSELQN 218
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 16/227 (7%)
Query: 997 VDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM 1056
V F++ VL+ ++ ++ G + + G +G GK++++ LI + +G ++ G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 1057 DVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSL 1116
+ SQ I G I++NI+ D I+
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQD--ITKF 145
Query: 1117 KDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDV-QSEQVVQEALDR 1175
+ T GE GV LSGG + + LLD LDV EQV + + +
Sbjct: 146 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 205
Query: 1176 IMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+M +T I+V ++ ++K D I ++ G GT+++L +R F
Sbjct: 206 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 252
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 16/221 (7%)
Query: 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXX 418
+V FS+ + VLK+ NL ++ G+ +A+ G++GSGK++ + L+ +A
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 419 XXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQ 478
Q W+ + GT IK+NI+ D + + I +
Sbjct: 100 RVSFCSQFSWI------------MPGT-IKENIIGVSYDEYRYKSVVKACQLQQD--ITK 144
Query: 479 LPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV-QNALD 537
E T +GE G LSGGQ+ K+ + LLD LD +E V ++ +
Sbjct: 145 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 204
Query: 538 QASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+ +T ++V K+ +R AD I ++ G GT ++L
Sbjct: 205 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 16/215 (7%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ + +++ G + + G +G GK++++ +I + +G ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
+ SQ I G I++NI+ D IS + GE G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED--ISKFAEKDNIVLGEGG 157
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LSGG + + LLD LDV +E ++ + + ++M +T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++ +KK D I ++ +G GT+++L ++R F
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 18/246 (7%)
Query: 362 FSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXX 421
FS S + VLKD N K++ G+ +A+ G++G+GK++ + ++ +
Sbjct: 43 FSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG--------- 93
Query: 422 XXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPE 481
++K R + SQ + +IK+NI+ D + I + E
Sbjct: 94 ---KIKHSGR-ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED--ISKFAE 147
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESET-LVQNALDQAS 540
+GE G LSGGQ+ K+ + LLD LD +E + ++ + +
Sbjct: 148 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR--QFSC 598
+T ++V K+ ++ AD I ++ G GT ++L N +K+ QFS
Sbjct: 208 ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSA 267
Query: 599 DDQETI 604
+ + +I
Sbjct: 268 ERRNSI 273
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 16/215 (7%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ + +++ G + + G +G GK++++ +I + +G ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
+ SQ I G I++NI+ D IS + GE G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED--ISKFAEKDNIVLGEGG 157
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LSGG + + LLD LDV +E ++ + + ++M +T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++ +KK D I ++ +G GT+++L ++R F
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF 252
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 18/250 (7%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXX 417
+ + FS S + VLKD N K++ G+ +A+ G++G+GK++ + ++ +
Sbjct: 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG----- 93
Query: 418 XXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIR 477
++K R + SQ + +IK+NI+ D + I
Sbjct: 94 -------KIKHSGR-ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED--IS 143
Query: 478 QLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESET-LVQNAL 536
+ E +GE G LSGGQ+ K+ + LLD LD +E + ++ +
Sbjct: 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 537 DQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR-- 594
+ +T ++V K+ ++ AD I ++ G GT ++L N +K+
Sbjct: 204 CKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFD 263
Query: 595 QFSCDDQETI 604
QFS + + +I
Sbjct: 264 QFSAERRNSI 273
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 17/210 (8%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVR 430
+V KD NL + G+ V VG SG GKST + ++
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAE 74
Query: 431 REMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIXXXXXXXXHNFIRQLPEGYETK-- 486
R +G+V Q +AL+ S+ +N+ FG KL EVI + + Q+ E +
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI--------NQRVNQVAEVLQLAHL 126
Query: 487 VGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDS--ESETLVQNALDQASLGRT 544
+ + LSGGQ+Q P + LLDE S LD+ + ++ + LGRT
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 545 TLVVAH-KLSTVRNADLIAVVDNGCLVEIG 573
+ V H ++ + AD I V+D G + ++G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 15/218 (6%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
+ +V + ++++ G V VG SGCGKST++ +I + G + + + R D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFG-KLDXXXXXXXXXXXXXXXXXF-ISSLKDGYET 1122
+ +V Q +Y ++ +N+ FG KL ++ L D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD---- 128
Query: 1123 ECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM--MGR 1180
+ LSGG P++ LLDE S LD ++ + R+ +GR
Sbjct: 129 ---RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 1181 TTIVVAH-RLNTIKKLDSIALVADGRVVERGTYAQLTH 1217
T I V H ++ + D I ++ GRV + G +L H
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 17/210 (8%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVR 430
+V KD NL + G+ V VG SG GKST + ++
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAE 74
Query: 431 REMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIXXXXXXXXHNFIRQLPEGYETK-- 486
R +G+V Q +AL+ S+ +N+ FG KL EVI + + Q+ E +
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI--------NQRVNQVAEVLQLAHL 126
Query: 487 VGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDS--ESETLVQNALDQASLGRT 544
+ + LSGGQ+Q P + LLDE S LD+ + ++ + LGRT
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 545 TLVVAH-KLSTVRNADLIAVVDNGCLVEIG 573
+ V H ++ + AD I V+D G + ++G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 15/218 (6%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
+ +V + ++++ G V VG SGCGKST++ +I + G + + + R D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFG-KLDXXXXXXXXXXXXXXXXXF-ISSLKDGYET 1122
+ +V Q +Y ++ +N+ FG KL ++ L D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD---- 128
Query: 1123 ECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM--MGR 1180
+ LSGG P++ LLDE S LD ++ + R+ +GR
Sbjct: 129 ---RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 1181 TTIVVAH-RLNTIKKLDSIALVADGRVVERGTYAQLTH 1217
T I V H ++ + D I ++ GRV + G +L H
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 15/215 (6%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ + +++ G + + G +G GK++++ +I + +G ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
+ SQ I G I++NI+FG + IS + GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LS G + + LLD LDV +E ++ + + ++M +T I+V
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++ +KK D I ++ +G GT+++L +++ F
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 253
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 19/212 (8%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRR 431
VLKD N K++ G+ +A+ G++G+GK++ + ++ + Q W+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI-- 110
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXX--XXXXXHNFIRQLPEGYETKVGE 489
+ GT IK+NI+FG + DE I + E +GE
Sbjct: 111 ----------MPGT-IKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 490 RGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESET-LVQNALDQASLGRTTLVV 548
G LS GQ+ K+ + LLD LD +E + ++ + + +T ++V
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 549 AHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
K+ ++ AD I ++ G GT ++L N
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSELQN 248
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 15/215 (6%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ + +++ G + + G +G GK++++ +I + +G ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
+ SQ I G I++NI+ G + IS + GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LSGG + + LLD LDV +E ++ + + ++M +T I+V
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++ +KK D I ++ +G GT+++L +++ F
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 253
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 21/252 (8%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXX 417
+ + FS S + VLKD N K++ G+ +A+ G++G+GK++ + ++ +
Sbjct: 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98
Query: 418 XXXXXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXX--XXXXXHNF 475
Q W+ + GT IK+NI+ G + DE
Sbjct: 99 GRISFCSQFSWI------------MPGT-IKENIIAG---VSYDEYRYRSVIKACQLEED 142
Query: 476 IRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESET-LVQN 534
I + E +GE G LSGGQ+ K+ + LLD LD +E + ++
Sbjct: 143 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 202
Query: 535 ALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR 594
+ + +T ++V K+ ++ AD I ++ G GT ++L N +K+
Sbjct: 203 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDS 262
Query: 595 --QFSCDDQETI 604
QFS + + +I
Sbjct: 263 FDQFSAERRNSI 274
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 17/210 (8%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVR 430
+V KD NL + G+ V VG SG GKST + ++
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAE 74
Query: 431 REMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIXXXXXXXXHNFIRQLPEGYETK-- 486
R +G+V Q +AL+ S+ +N+ FG KL EVI + + Q+ E +
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI--------NQRVNQVAEVLQLAHL 126
Query: 487 VGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDS--ESETLVQNALDQASLGRT 544
+ + LSGGQ+Q P + LLD+ S LD+ + ++ + LGRT
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 545 TLVVAH-KLSTVRNADLIAVVDNGCLVEIG 573
+ V H ++ + AD I V+D G + ++G
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 15/218 (6%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
+ +V + ++++ G V VG SGCGKST++ +I + G + + + R D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFG-KLDXXXXXXXXXXXXXXXXXF-ISSLKDGYET 1122
+ +V Q +Y ++ +N+ FG KL ++ L D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD---- 128
Query: 1123 ECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM--MGR 1180
+ LSGG P++ LLD+ S LD ++ + R+ +GR
Sbjct: 129 ---RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 1181 TTIVVAH-RLNTIKKLDSIALVADGRVVERGTYAQLTH 1217
T I V H ++ + D I ++ GRV + G +L H
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 19/220 (8%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQ----LKW 428
+++ +L+VK G+ + L+G SG GK+T + ++ + + +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 429 VRREMGLVSQEHALFG-TSIKDNIMFG-KLDATMDEVIXXXXXXXXHNFIRQLPE--GYE 484
R++ +V Q +AL+ ++ DNI F KL + I +R++ E G
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI--------DQRVREVAELLGLT 130
Query: 485 TKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALD--QASLG 542
+ + LSGGQ+Q + P + L+DE S LD++ ++ L Q LG
Sbjct: 131 ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 543 RTTLVVAH-KLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
TT+ V H ++ + D IAV++ G L ++G+ +++ ++
Sbjct: 191 VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 15/204 (7%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD----VHW 1065
+R+ S+EVK G + L+G SGCGK+T + +I + +G + + V + + V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFG-KLDXXXXXXXXXXXXXXXXXFISSLKDGYETE 1123
+ A+V Q +Y + DNI F KL G
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL------GLTEL 132
Query: 1124 CGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRI--MMGRT 1181
+ +LSGG P + L+DE S LD + ++ L ++ +G T
Sbjct: 133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 1182 TIVVAH-RLNTIKKLDSIALVADG 1204
TI V H ++ + D IA++ G
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRG 216
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 19/227 (8%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV--RELDVHWY 1066
VL S+ + PG + ++G SGCGK+T++ + F + G + + G + + ++
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 1067 RKHTALVSQEPVIYAG-NIRDNIVFGKLDXXXXXXXXXXXXXXXXXF--ISSLKDGYETE 1123
+ + QE V++ + NI +G + IS L Y E
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHE 138
Query: 1124 CGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRT 1181
LSGG +P ++LLDE SALD Q + ++E + + G++
Sbjct: 139 -------LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS 191
Query: 1182 TIVVAH-RLNTIKKLDSIALVADGRVVERGT----YAQLTHMRGAFF 1223
+ V+H R ++ D IA++ GR+++ + Y Q + A F
Sbjct: 192 AVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALF 238
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 18/228 (7%)
Query: 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF--YDAXXXXXXX 416
H+ S+ + P VL D +L + G+ + ++GASG GK+T + + F D+
Sbjct: 9 HLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG 65
Query: 417 XXXXXXXLQLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIXXXXXXXXHNF 475
L R +G + QE LF ++ NI +G +
Sbjct: 66 KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-------GRTAQERQR 118
Query: 476 IRQLPE--GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQ 533
I + E G G LSGGQ+Q +P ++LLDE SALD + ++
Sbjct: 119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIR 178
Query: 534 NALDQA--SLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+ A + G++ + V+H + ++ AD IAV+ G +++ + ++L
Sbjct: 179 EDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 16/215 (7%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ + +++ G + + G +G GK++++ +I + +G ++ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
+ SQ I G I++NI+ D IS + GE G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED--ISKFAEKDNIVLGEGG 127
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LSGG + + LLD LDV +E ++ + + ++M +T I+V
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++ +KK D I ++ +G GT+++L +++ F
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 222
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 16/210 (7%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRR 431
VLKD N K++ G+ +A+ G++G+GK++ + ++ + Q W+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI-- 80
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERG 491
+ GT IK+NI+ D + I + E +GE G
Sbjct: 81 ----------MPGT-IKENIIGVSYDEYRYRSVIKACQLEED--ISKFAEKDNIVLGEGG 127
Query: 492 ALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESET-LVQNALDQASLGRTTLVVAH 550
LSGGQ+ K+ + LLD LD +E + ++ + + +T ++V
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
K+ ++ AD I ++ G GT ++L N
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSELQN 217
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
L S++V+ G ++G +G GK+ + LI F+ + G + +DG DV +L KH
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE---KH 72
Query: 1070 -TALVSQEPVIYAG-NIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKD-GYETECGE 1126
A V Q ++ N++ N+ FG + + +D E
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFG---------MRMKKIKDPKRVLDTARDLKIEHLLDR 123
Query: 1127 RGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVA 1186
+ LSGG NP ILLLDE SALD ++++ +E L ++ + + V
Sbjct: 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS-VLHKKNKLTVL 182
Query: 1187 HRLNTIKK----LDSIALVADGRVVERGTYAQL 1215
H + + D IA+V DG++++ G ++
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 29/227 (12%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRRE 432
L + +LKV++G+ ++G +G+GK+ + L+ F+ L + + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 433 MGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVG--- 488
+ V Q ++LF ++K N+ FG M ++ + R L + K+
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG---MRMKKI---------KDPKRVLDTARDLKIEHLL 121
Query: 489 ERGAL-LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGR---- 543
+R L LSGG++Q NP ILLLDE SALD ++ +NA + S+
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ---ENAREMLSVLHKKNK 178
Query: 544 -TTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDLINR-IDGHYA 587
T L + H + R AD IAVV +G L+++G ++ + ++G A
Sbjct: 179 LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 19/232 (8%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXX 414
IE V F Y VLKD N + + GK +VG +GSGK+T + ++ A
Sbjct: 12 IELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIF 68
Query: 415 XXXXXXXXXLQLKWVRREMGLVSQEHA--LFGTSIKDNIMFGKLDATMDEVIXXXXXXXX 472
L +R+ +G V Q + + G ++++++ F +DE
Sbjct: 69 LDGSPADPFL----LRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-------SEM 117
Query: 473 HNFIRQLPE--GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESET 530
I+++ E G LSGGQKQ ++ L LDE S LD S+
Sbjct: 118 RKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQR 177
Query: 531 LVQNALDQ-ASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
+ L+ + G+ ++V H+L + + D I + NG + G+ + + R
Sbjct: 178 EIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 15/230 (6%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+IE+ V F Y VL+ + E + G +VGK+G GK+T++ ++ G
Sbjct: 11 RIELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGE 66
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPV--IYAGNIRDNIVFGKLDXXXXXXXXXXXXXX 1108
+ +DG D RK+ V Q P I + +++ F
Sbjct: 67 IFLDGSPA---DPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKK 123
Query: 1109 XXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQV 1168
+ G + LSGG + L LDE S LD S++
Sbjct: 124 VLELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQRE 178
Query: 1169 VQEALDRIMM-GRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTH 1217
+ + L+ + G+ I+V H L + +D I +++G + G++ +
Sbjct: 179 IFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Query: 1025 LVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAG-N 1083
L+G +G GKS + LI ++G VR++G D+ L R+ V Q+ ++ +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 1084 IRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXX 1143
+ NI +G + I+ L D + +LSGG
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-------RKPARLSGGERQRVALAR 139
Query: 1144 XXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK----LDSIA 1199
P +LLLDE SA+D++++ V+ E L R + + + H + + + D +A
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVA 198
Query: 1200 LVADGRVVERGTYAQL 1215
++ +GR+VE+G +L
Sbjct: 199 VMLNGRIVEKGKLKEL 214
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 14/218 (6%)
Query: 376 FNLKVKAGKS-VALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRREMG 434
N+ + G+ L+G +G+GKS + L+ L + RR +G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 435 LVSQEHALF-GTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGAL 493
V Q++ALF S+ NI +G + E I L + + A
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-------LDRKPAR 126
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAHK 551
LSGG++Q P +LLLDE SA+D +++ ++ L Q L V H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 552 L-STVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAK 588
L AD +AV+ NG +VE G +L + +G A+
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAE 224
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 20/245 (8%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRRE 432
L++ +L + G+ + + G +GSGKST + +V + + +RR
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 79
Query: 433 MGLVSQ--EHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGER 490
+G+ Q E F + D + F + D F+ + ++ +V
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRVP-- 136
Query: 491 GALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQ-ASLGRTTLVVA 549
LSGG+K+ P IL+LDE LD E +T + +++ +LG+T ++++
Sbjct: 137 -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 550 HKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY--AKMAKLQR-------QFSCD 599
H + TV N D + V++ G V GT + + + D + +KM ++R FS
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGEDPFSMS 255
Query: 600 DQETI 604
D E +
Sbjct: 256 DDELL 260
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 11/210 (5%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
L S+ + G + + G +G GKST++ ++ + G V DG + ++ R++
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEI---RRN 79
Query: 1070 TALVSQEPV--IYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGER 1127
+ Q P +A + D + F + F+ D ++
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-- 136
Query: 1128 GVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDR-IMMGRTTIVVA 1186
LSGG P IL+LDE LD + + + +++ +G+T I+++
Sbjct: 137 -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 1187 HRLNT-IKKLDSIALVADGRVVERGTYAQL 1215
H + T I +D + ++ G+ V GT +
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 20/245 (8%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRRE 432
L++ +L + G+ + + G +GSGKST + +V + + +RR
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 81
Query: 433 MGLVSQ--EHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGER 490
+G+ Q E F + D + F + D F+ + ++ +V
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRVP-- 138
Query: 491 GALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQ-ASLGRTTLVVA 549
LSGG+K+ P IL+LDE LD E +T + +++ +LG+T ++++
Sbjct: 139 -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 550 HKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY--AKMAKLQR-------QFSCD 599
H + TV N D + V++ G V GT + + + D + +KM ++R FS
Sbjct: 198 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGEDPFSMS 257
Query: 600 DQETI 604
D E +
Sbjct: 258 DDELL 262
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 11/210 (5%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
L S+ + G + + G +G GKST++ ++ + G V DG + ++ R++
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEI---RRN 81
Query: 1070 TALVSQEPV--IYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGER 1127
+ Q P +A + D + F + F+ D ++
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-- 138
Query: 1128 GVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDR-IMMGRTTIVVA 1186
LSGG P IL+LDE LD + + + +++ +G+T I+++
Sbjct: 139 -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 1187 HRLNT-IKKLDSIALVADGRVVERGTYAQL 1215
H + T I +D + ++ G+ V GT +
Sbjct: 198 HDIETVINHVDRVVVLEKGKKVFDGTRMEF 227
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 19/221 (8%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQ--- 425
D +KD +L++K G+ + L+G SG GK+T + + + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 426 -LKWVRREMGLVSQEHALF-GTSIKDNIMFG-KLDATMDEVIXXXXXXXXHNFIRQLPE- 481
+ R++ V Q +AL+ ++ DNI F KL + I +R++ E
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKR--------VREVAEX 129
Query: 482 -GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALD--Q 538
G + + LSGGQ+Q + P + L DE S LD++ + L Q
Sbjct: 130 LGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 539 ASLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVEIGTHNDL 578
LG TT+ V H ++ D IAV + G L ++GT +++
Sbjct: 190 RQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 15/215 (6%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD--- 1062
D ++ S+E+K G + L+G SGCGK+T + I + +G + ++ V + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 1063 -VHWYRKHTALVSQEPVIYA-GNIRDNIVFG-KLDXXXXXXXXXXXXXXXXXFISSLKDG 1119
V + A V Q +Y + DNI F KL G
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXL------G 131
Query: 1120 YETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRI--M 1177
+ +LSGG P + L DE S LD + + L ++
Sbjct: 132 LTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQ 191
Query: 1178 MGRTTIVVAH-RLNTIKKLDSIALVADGRVVERGT 1211
+G TTI V H ++ D IA+ G + + GT
Sbjct: 192 LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 40/229 (17%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALV---------QRFYDAXXXXXXXXXXXX 421
+ L + N+ ++ G+ ++G SG+GK+T + ++ + ++D
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD------DRLVASN 72
Query: 422 XXLQLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDE------VIXXXXXXXXHN 474
L + R++G+V Q AL+ + +NI F + M + V H+
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSE----SET 530
+ P LSGGQ+Q K+P +LLLDE S LD+ +
Sbjct: 133 VLNHFPRE-----------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 531 LVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
LV+ Q+ LG T LVV+H + + AD + V+ G LV++G DL
Sbjct: 182 LVKEV--QSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 1130 QLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQ----SEQVVQEALDRIMMGRTTIVV 1185
+LSGG +P++LLLDE S LD + + +V+E R +G T +VV
Sbjct: 140 ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVV 197
Query: 1186 AHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+H I + D + ++ G++V+ G L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 7/209 (3%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
+L+ S E++ G GL+G +G GK+T + +I G V V G +V E + H RK
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
+ + +E AG R+ L ++ G + +R
Sbjct: 89 LISYLPEE----AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV 144
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMM-GRTTIVVAH 1187
S G NP + +LDE TS LDV + + V++ L + G T +V +H
Sbjct: 145 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
Query: 1188 RLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ ++ L D IAL+ +G +VE GT +L
Sbjct: 205 NMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASL 541
G K+ +R + S G + NP + +LDE TS LD + V+ L QAS
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 542 -GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
G T LV +H + V D IA++ NG +VE GT +L R
Sbjct: 195 EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 21/229 (9%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I+++ V Y + + L+ ++ +K G V + G SG GKST + +I +G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1051 VRVDGMDVRELD----VHWYRKHTALVSQE----PVIYA-GNIRDNIVFGKLDXXXXXXX 1101
V +D + +LD R V Q+ P++ A N+ ++F
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF-------KYRG 114
Query: 1102 XXXXXXXXXXFISSLKDGYETE--CGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATS 1159
+ LK E + QLSGG NP I+L DE T
Sbjct: 115 AXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTG 174
Query: 1160 ALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRV 1206
ALD ++ + + + L ++ G+T +VV H +N + + I + DG V
Sbjct: 175 ALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 17/225 (7%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXX 413
I+ ++V +Y + I LK+ NL +K G+ V++ G SGSGKST + ++
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 414 XXXXXXXXXXL---QLKWVRRE-MGLVSQEHALFG-----TSIKDNIMFGKLDATMDEVI 464
L +L +RR+ +G V Q+ L +++ ++F A E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 465 XXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSAL 524
+ E E + LSGGQ+Q NP I+L DE T AL
Sbjct: 122 RKRALECL-----KXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGAL 176
Query: 525 DSESETLVQNALDQASL--GRTTLVVAHKLSTVRNADLIAVVDNG 567
DS++ + L + + G+T +VV H ++ R + I + +G
Sbjct: 177 DSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 16/208 (7%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD----VHW 1065
L+ ++ +K G V ++G SG GKST++ +I +G V +D + +LD
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 1066 YRKHTALVSQE----PVIYA-GNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGY 1120
R V Q+ P++ A N+ ++F ++ L++ +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK--MAELEERF 138
Query: 1121 ETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMM-- 1178
+ QLSGG NP I+L D+ T ALD ++ + + + L ++
Sbjct: 139 ---ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195
Query: 1179 GRTTIVVAHRLNTIKKLDSIALVADGRV 1206
G+T +VV H +N + + I + DG V
Sbjct: 196 GKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 17/225 (7%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXX 413
I+ ++V +Y + I LK+ NL +K G+ V+++G SGSGKST + ++
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 414 XXXXXXXXXXL---QLKWVRRE-MGLVSQEHALFG-----TSIKDNIMFGKLDATMDEVI 464
L +L +RR+ +G V Q+ L +++ ++F A E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 465 XXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSAL 524
++ E E + LSGGQ+Q NP I+L D+ T AL
Sbjct: 122 RKRALECL-----KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 525 DSESETLVQNALDQASL--GRTTLVVAHKLSTVRNADLIAVVDNG 567
DS++ + L + + G+T +VV H ++ R + I + +G
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDG 221
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 92/215 (42%), Gaps = 16/215 (7%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ + +++ G + + G +G GK++++ +I + +G ++ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
+ SQ I G I++NI+ D IS + GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED--ISKFAEKDNIVLGEGG 157
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LS G + + LLD LDV +E ++ + + ++M +T I+V
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++ +KK D I ++ +G GT+++L +++ F
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 252
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 16/210 (7%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRR 431
VLKD N K++ G+ +A+ G++G+GK++ + ++ + Q W+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI-- 110
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERG 491
+ GT IK+NI+ D + I + E +GE G
Sbjct: 111 ----------MPGT-IKENIIGVSYDEYRYRSVIKACQLEED--ISKFAEKDNIVLGEGG 157
Query: 492 ALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESET-LVQNALDQASLGRTTLVVAH 550
LS GQ+ K+ + LLD LD +E + ++ + + +T ++V
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
K+ ++ AD I ++ G GT ++L N
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 40/229 (17%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALV---------QRFYDAXXXXXXXXXXXX 421
+ L + N+ ++ G+ ++G SG+GK+T + ++ + ++D
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD------DRLVASN 72
Query: 422 XXLQLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDE------VIXXXXXXXXHN 474
L + R++G+V Q AL+ + +NI F + M + V H+
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSE----SET 530
+ P LSG Q+Q K+P +LLLDE S LD+ +
Sbjct: 133 VLNHFPRE-----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 531 LVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
LV+ Q+ LG T LVV+H + + AD + V+ G LV++G DL
Sbjct: 182 LVKEV--QSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 1130 QLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQ----SEQVVQEALDRIMMGRTTIVV 1185
+LSG +P++LLLDE S LD + + +V+E R +G T +VV
Sbjct: 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVV 197
Query: 1186 AHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+H I + D + ++ G++V+ G L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 16/208 (7%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD----VHW 1065
L+ ++ +K G V ++G SG GKST++ +I +G V +D + +LD
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 1066 YRKHTALVSQE----PVIYA-GNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGY 1120
R V Q+ P++ A N+ ++F ++ L++ +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK--MAELEERF 138
Query: 1121 ETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMM-- 1178
+ QLSGG NP I+L D+ T ALD ++ + + + L ++
Sbjct: 139 ---ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 1179 GRTTIVVAHRLNTIKKLDSIALVADGRV 1206
G+T +VV H +N + + I + DG V
Sbjct: 196 GKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 18/207 (8%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALV---QRFYDAXXXXXXXXXXXXXXLQLKWV 429
LK+ NL +K G+ V+++G SGSGKST + ++ + + +L +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 430 RRE-MGLVSQEHALFG-----TSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGY 483
RR+ +G V Q+ L +++ ++F A E ++ E
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL-----KMAELE 135
Query: 484 ETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSES-ETLVQ--NALDQAS 540
E + LSGGQ+Q NP I+L D+ T ALDS++ E ++Q L++
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNG 567
G+T +VV H ++ R + I + +G
Sbjct: 196 -GKTVVVVTHDINVARFGERIIYLKDG 221
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 15/212 (7%)
Query: 376 FNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRREMGL 435
NL +K G+ + L+G SG GK+T + ++ + L K R + +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87
Query: 436 VSQEHALFG-TSIKDNIMFG-KLDA-TMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGA 492
V Q +A++ ++ +NI F K+ DE+ I +L Y A
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-------A 140
Query: 493 LLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAH 550
LSGGQ+Q P +LL+DE S LD++ ++ + Q L TT+ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 551 -KLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
++ + D IAV++ G L++IG+ ++ R
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 15/212 (7%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
+ + ++ +K G + L+G SGCGK+T + +I + +G + DV L ++
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 84
Query: 1070 TALVSQEPVIYAG-NIRDNIVFG-KLDXXXXXXXXXXXXXXXXXF-ISSLKDGYETECGE 1126
++V Q ++ + +NI F K+ I L + Y
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA---- 140
Query: 1127 RGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIV 1184
QLSGG P +LL+DE S LD + ++ + ++ + TTI
Sbjct: 141 ---QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197
Query: 1185 VAH-RLNTIKKLDSIALVADGRVVERGTYAQL 1215
V H ++ + D IA++ G++++ G+ ++
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 15/212 (7%)
Query: 376 FNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRREMGL 435
NL +K G+ + L+G SG GK+T + ++ + L K R + +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 88
Query: 436 VSQEHALFG-TSIKDNIMFG-KLDA-TMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGA 492
V Q +A++ ++ +NI F K+ DE+ I +L Y A
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-------A 141
Query: 493 LLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAH 550
LSGGQ+Q P +LL+DE S LD++ ++ + Q L TT+ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 551 -KLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
++ + D IAV++ G L++IG+ ++ R
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 233
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 15/212 (7%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
+ + ++ +K G + L+G SGCGK+T + +I + +G + DV L ++
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 85
Query: 1070 TALVSQEPVIYAG-NIRDNIVFG-KLDXXXXXXXXXXXXXXXXXF-ISSLKDGYETECGE 1126
++V Q ++ + +NI F K+ I L + Y
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA---- 141
Query: 1127 RGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIV 1184
QLSGG P +LL+DE S LD + ++ + ++ + TTI
Sbjct: 142 ---QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 198
Query: 1185 VAH-RLNTIKKLDSIALVADGRVVERGTYAQL 1215
V H ++ + D IA++ G++++ G+ ++
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 15/237 (6%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRELDV 1063
D +LR S++V PG ++G +G GKST+ + + Y+V G+V G D+ L
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 1064 HWYRKHTALVS-QEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXF-------ISS 1115
++ Q PV G N F + F I+
Sbjct: 73 EDRAGEGIFMAFQYPVEIPG--VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 130
Query: 1116 LKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDR 1175
LK + V SGG P + +LDE+ S LD+ + +VV + ++
Sbjct: 131 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 190
Query: 1176 IMMG-RTTIVVAH--RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
+ G R+ I+V H R+ K D + ++ GR+V+ G + + + + T Q
Sbjct: 191 LRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQ 247
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 41/240 (17%)
Query: 360 VKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXX 419
+K + S D +L+ +L V G+ A++G +GSGKST A + D
Sbjct: 4 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 420 XXXXLQLKWVRR-------------EMGLVSQEHAL----------FGTSIKDNIMFGKL 456
L L R E+ VS + L G D F L
Sbjct: 64 GKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL 123
Query: 457 DATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILL 516
M+E I + ++PE T+ G SGG+K+ P + +
Sbjct: 124 ---MEEKIA----------LLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCI 168
Query: 517 LDEATSALDSESETLVQNALDQASLG-RTTLVVAH--KLSTVRNADLIAVVDNGCLVEIG 573
LDE+ S LD ++ +V + ++ G R+ ++V H ++ D + V+ G +V+ G
Sbjct: 169 LDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 15/237 (6%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRELDV 1063
D +LR S++V PG ++G +G GKST+ + + Y+V G+V G D+ L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 1064 HWYRKHTALVS-QEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXF-------ISS 1115
++ Q PV G N F + F I+
Sbjct: 92 EDRAGEGIFMAFQYPVEIPG--VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 149
Query: 1116 LKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDR 1175
LK + V SGG P + +LDE+ S LD+ + +VV + ++
Sbjct: 150 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 209
Query: 1176 IMMG-RTTIVVAH--RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
+ G R+ I+V H R+ K D + ++ GR+V+ G + + + + T Q
Sbjct: 210 LRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQ 266
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 41/240 (17%)
Query: 360 VKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXX 419
+K + S D +L+ +L V G+ A++G +GSGKST A + D
Sbjct: 23 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82
Query: 420 XXXXLQLKWVRR-------------EMGLVSQEHAL----------FGTSIKDNIMFGKL 456
L L R E+ VS + L G D F L
Sbjct: 83 GKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL 142
Query: 457 DATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILL 516
M+E I + ++PE T+ G SGG+K+ P + +
Sbjct: 143 ---MEEKIA----------LLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCI 187
Query: 517 LDEATSALDSESETLVQNALDQASLG-RTTLVVAH--KLSTVRNADLIAVVDNGCLVEIG 573
LDE+ S LD ++ +V + ++ G R+ ++V H ++ D + V+ G +V+ G
Sbjct: 188 LDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 30/250 (12%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQ-----LK 427
LK N+ +K G+ A++G +G GKST L Q F + +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKST---LFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80
Query: 428 WVRREMGLVSQE--HALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYET 485
+R +G+V Q+ + LF S+ ++ FG ++ + E N +++ G E
Sbjct: 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE---DEIRKRVDNALKR--TGIEH 135
Query: 486 KVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNAL--DQASLGR 543
+ LS GQK+ P +L+LDE T+ LD + + L Q LG
Sbjct: 136 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 544 TTLVVAHKLSTVR-NADLIAVVDNGCLV------EIGTHNDLINRID------GHYAKMA 590
T ++ H + V D + V+ G ++ E+ ++I +++ GH ++
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEIL 255
Query: 591 KLQRQFSCDD 600
K + F D+
Sbjct: 256 KEKDGFVFDE 265
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 16/215 (7%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG--MDVRELDVHWYR 1067
L+ +M +K G ++G +G GKST+ G + D +D + R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1068 KHTALVSQEP--VIYAGNIRDNIVFGKLDXX--XXXXXXXXXXXXXXXFISSLKDGYETE 1123
+ +V Q+P +++ ++ ++ FG ++ I LKD T
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPTH 142
Query: 1124 CGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRT 1181
C LS G P +L+LDE T+ LD + + L + +G T
Sbjct: 143 C------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGIT 196
Query: 1182 TIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQL 1215
I+ H ++ + D++ ++ +GRV+ +G ++
Sbjct: 197 IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDAXXXXXXXXXXXXXXLQLKW 428
+LK +L VK G+ V+++GASGSGKST + L+ + +L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 429 VR-REMGLVSQEHALFG--TSIKDNIM----FGKLDATMDEVIXXXXXXXXHNFIRQLPE 481
+R R++G V Q H L T++++ I+ GK E + +L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE--------RGEYLLSEL-- 128
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASL 541
G K+ + LSGG++Q P++L DE T LDS + V + + +
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 542 GRTTLV-VAHK 551
G T++V V H+
Sbjct: 189 GGTSIVMVTHE 199
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 11/205 (5%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV-----RELDV 1063
+L+ S+ VK G V ++G SG GKST++ ++ +G V ++G +V +EL +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETE 1123
RK + +I +N++ L +S L G +
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLK---MGKPKKEAKERGEYLLSEL--GLGDK 133
Query: 1124 CGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTI 1183
+ +LSGG P +L DE T LD + + V + +I G T+I
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSI 193
Query: 1184 VVAHRLNTIKKLDSIAL-VADGRVV 1207
V+ + +L L + DG+VV
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKVV 218
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 24/236 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKD-FNLKVKAGKSVALVGASGSGKSTAIALVQ-------RF 406
I E ++ Y R +I D +L + A+VG S SGKST I + R
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 407 YDAXXXXXXXXXXXXXXLQLKWVR-REMGLVSQ--EHALFGT-----SIKDNIMFGKLDA 458
+L+ +R +E+ LV Q + +L T KD + +
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 459 TMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLD 518
+ E+I +R PE + LSGG KQ +PV+L+LD
Sbjct: 125 SHSELIEKASEKL--RMVRLNPEAV---LNSYPLQLSGGMKQRVLIALALLLDPVVLILD 179
Query: 519 EATSALDSESET-LVQNALDQASLGRTTLV-VAHKLSTVRN-ADLIAVVDNGCLVE 571
E TSALD ++ ++Q + + + TL+ V H ++ AD +AV+ G LVE
Sbjct: 180 EPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIV-VA 1186
+QLSGG +P +L+LDE TSALDV ++ ++Q + M + T++ V
Sbjct: 153 LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVT 212
Query: 1187 HRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
H + +L D +A++ G +VE + Q+
Sbjct: 213 HDIAVAAELADKVAVIYGGNLVEYNSTFQI 242
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 1121 ETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMM-- 1178
E G+ V LSGG P +LL DE TSALD ++V E L RIM
Sbjct: 144 ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD---PELVGEVL-RIMQQL 199
Query: 1179 ---GRTTIVVAHRLNTIKKLDS-IALVADGRVVERGTYAQL 1215
G+T +VV H + + + S + + G++ E G Q+
Sbjct: 200 AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQ-ASLGRTTLVVAHKL 552
LSGGQ+Q P +LL DE TSALD E V + Q A G+T +VV H++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 553 STVRN 557
R+
Sbjct: 214 GFARH 218
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRELDV-HW 1065
+L+ ++ V G L+G +G GKST+ ++ Y VE+G + +DG ++ EL
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECG 1125
RK L Q PV G N + L L D E+
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 1126 ER-GVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRT--T 1182
SGG PT +LDE S LD+ + +VV ++ M G
Sbjct: 138 RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN-AMRGPNFGA 196
Query: 1183 IVVAHR---LNTIKKLDSIALVADGRVVERG 1210
+V+ H LN I+ D + ++ DGRVV G
Sbjct: 197 LVITHYQRILNYIQP-DKVHVMMDGRVVATG 226
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 17/219 (7%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRR 431
++ D +L + +G+ VA++G +G+GKST + L+ + Q K + R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 432 EMGLVSQEHAL-FGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGER 490
++ Q L F S+ + I G+ + L +
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-------RD 138
Query: 491 GALLSGGQKQXXXXXXXXXK------NPVILLLDEATSALDSESETLVQNALDQASLGRT 544
+LSGG++Q + P L LDE TSALD + L Q +
Sbjct: 139 YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198
Query: 545 TLV--VAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLIN 580
V V H L+ AD I ++ G LV GT +++N
Sbjct: 199 LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 25/217 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
++ S+ + G V ++G +G GKST++ L+ + G + G ++ +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 1069 HTALVSQ-EPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETEC--- 1124
A++ Q + + ++ + I G+ +T+C
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMA-----------QTDCLAL 134
Query: 1125 GERGVQ-LSGGXXXXXXXXXXXXX------NPTILLLDEATSALDVQSEQVVQEALDRIM 1177
+R + LSGG P L LDE TSALD+ +Q L ++
Sbjct: 135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194
Query: 1178 MGRTTIV--VAHRLNTIK-KLDSIALVADGRVVERGT 1211
V V H LN D I L+A G++V GT
Sbjct: 195 RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGT 231
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 22/214 (10%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD-VHWYRKHTAL 1072
S+ V G ++G +G GKST+I +I F ++G V + D+ + Y
Sbjct: 27 SISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86
Query: 1073 VSQEPV-IYAGNIRDNIVFGKLDXXXX-------------XXXXXXXXXXXXXFISSLKD 1118
Q P + + +N++ G+++ F+ L
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL-KLSH 145
Query: 1119 GYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQ-SEQVVQEALDRIM 1177
Y+ + GE LSGG NP ++++DE + + + + L+
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 1178 MGRTTIVVAHRLNTI-KKLDSIALVADGRVVERG 1210
G T +++ HRL+ + +D + ++ +G+++ G
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 36.6 bits (83), Expect = 0.080, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 478 QLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSAL-DSESETLVQNAL 536
+L Y+ K GE LSGGQ + NP ++++DE + + + + + L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 537 DQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRI 582
+ + G T L++ H+L V N D + V+ NG ++ G + I +
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 244
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.023, Method: Composition-based stats.
Identities = 42/214 (19%), Positives = 85/214 (39%), Gaps = 22/214 (10%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD-VHWYRKHTAL 1072
S+ V G ++G +G GKST+I +I F ++G V + D+ + Y
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86
Query: 1073 VSQEPV-IYAGNIRDNIVFGKL-------------DXXXXXXXXXXXXXXXXXFISSLKD 1118
Q P + + +N++ G++ F+ L
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL-KLSH 145
Query: 1119 GYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQ-SEQVVQEALDRIM 1177
Y+ + GE LSGG NP ++++DE + + + + L+
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 1178 MGRTTIVVAHRLNTI-KKLDSIALVADGRVVERG 1210
G T +++ HRL+ + +D + ++ +G+++ G
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 37.0 bits (84), Expect = 0.069, Method: Composition-based stats.
Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 30/231 (12%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA--------------XXXXXXXXX 418
L ++ V G ++G +GSGKST I ++ F A
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 419 XXXXXLQLKWVRREMGLVSQEHALFGT-----SIKDNIMFGKLDATMDEVIXXXXXXXXH 473
Q +EM ++ E+ L G S +++ + K +E++
Sbjct: 83 GIVRTFQTPQPLKEMTVL--ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL-- 138
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSAL-DSESETLV 532
F++ L Y+ K GE LSGGQ + NP ++++DE + + + +
Sbjct: 139 EFLK-LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 533 QNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRI 582
+ L+ + G T L++ H+L V N D + V+ NG ++ G + I +
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 244
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 80/215 (37%), Gaps = 30/215 (13%)
Query: 1013 FSMEVKPGT-----SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYR 1067
F +EV+PG +G+VG +G GK+T + ++ + +G V D L V Y+
Sbjct: 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------LTV-AYK 422
Query: 1068 KHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGER 1127
E +Y + K+D I L D R
Sbjct: 423 PQYIKAEYEGTVYE-------LLSKIDSSKLNSNFYKTELLKPLGIIDLYD--------R 467
Query: 1128 GVQ-LSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMG--RTTIV 1184
V+ LSGG + I LLDE ++ LDV+ V A+ +M +T +V
Sbjct: 468 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 1185 VAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMR 1219
V H + I + +V +G G MR
Sbjct: 528 VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 80/215 (37%), Gaps = 30/215 (13%)
Query: 1013 FSMEVKPGT-----SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYR 1067
F +EV+PG +G+VG +G GK+T + ++ + +G V D L V Y+
Sbjct: 356 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------LTV-AYK 408
Query: 1068 KHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGER 1127
E +Y + K+D I L D R
Sbjct: 409 PQYIKAEYEGTVYE-------LLSKIDSSKLNSNFYKTELLKPLGIIDLYD--------R 453
Query: 1128 GVQ-LSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMG--RTTIV 1184
V+ LSGG + I LLDE ++ LDV+ V A+ +M +T +V
Sbjct: 454 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
Query: 1185 VAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMR 1219
V H + I + +V +G G MR
Sbjct: 514 VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR 548
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.025, Method: Composition-based stats.
Identities = 41/214 (19%), Positives = 86/214 (40%), Gaps = 22/214 (10%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD-VHWYRKHTAL 1072
S+ V G ++G +G GKST+I +I F ++G V + D+ + Y
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86
Query: 1073 VSQEPV-IYAGNIRDNIVFGKLDXXXX-------------XXXXXXXXXXXXXFISSLKD 1118
Q P + + +N++ G+++ F+ L
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL-KLSH 145
Query: 1119 GYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQ-SEQVVQEALDRIM 1177
Y+ + GE LSGG NP ++++D+ + + + + L+
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKA 201
Query: 1178 MGRTTIVVAHRLNTI-KKLDSIALVADGRVVERG 1210
G T +++ HRL+ + +D + ++ +G+++ G
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 25/229 (10%)
Query: 988 ISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE 1047
++ + + + F Y + + + +Q + ++ G + ++G++GCGKST++ L+ +
Sbjct: 1 MNKALSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI 58
Query: 1048 QGSVRVDGMDVRELDVHWYRKHTALVSQ---EPVIYAGNIRDNIVFGKLDXXXXXXXXXX 1104
QG + V + V Q P Y+ + D ++ G+
Sbjct: 59 QGKIEV-------------YQSIGFVPQFFSSPFAYS--VLDIVLMGR--STHINTFAKP 101
Query: 1105 XXXXXXXFISSLKDGYETECGERG-VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDV 1163
+ +L T +R LSGG ++LLDE TSALD+
Sbjct: 102 KSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161
Query: 1164 QSEQVVQEALDRIMMGRTTIVV--AHRLNTIKKLDSIALVADGRVVERG 1210
++ +V L + + VV H+ N + + + L+ + + + G
Sbjct: 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFG 210
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 28/219 (12%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXX 417
E++ F Y + ++ + + N + G +A++G +G GKST + L+ +
Sbjct: 8 ENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-- 63
Query: 418 XXXXXXLQLKWVRREMGLVSQEHA-LFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNF- 475
V + +G V Q + F S+ D ++ G+ I H++
Sbjct: 64 -----------VYQSIGFVPQFFSSPFAYSVLDIVLMGR-----STHINTFAKPKSHDYQ 107
Query: 476 --IRQLPEGYETKVGERG-ALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLV 532
++ L T + +R LSGGQ+Q ++LLDE TSALD ++ +V
Sbjct: 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571
+ L + + VV +T + ++A+ + L+
Sbjct: 168 LSLLIDLAQSQNMTVV---FTTHQPNQVVAIANKTLLLN 203
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 1126 ERGVQ-LSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRI-MMGRTTI 1183
ER +Q LSGG N T DE +S LD++ A+ R+ G++ +
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 1184 VVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRG 1220
VV H L + L I V G E G Y + +G
Sbjct: 213 VVEHDLAVLDYLSDIIHVVYG---EPGVYGIFSQPKG 246
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 1013 FSMEVKPGT-----SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYR 1067
F +EV+PG +G+VG +G GK+T + + + +G + D L V Y+
Sbjct: 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD------LTV-AYK 352
Query: 1068 KHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGER 1127
E +Y + K+D I L Y+ E E
Sbjct: 353 PQYIKADYEGTVYE-------LLSKIDASKLNSNFYKTELLKPLGIIDL---YDREVNE- 401
Query: 1128 GVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMG--RTTIVV 1185
LSGG + I LLDE ++ LDV+ V A+ + +T +VV
Sbjct: 402 ---LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 1186 AHRLNTIKKLDSIALVADGRVVERGTYAQ 1214
H + I + V +G E G Y +
Sbjct: 459 EHDVLXIDYVSDRLXVFEG---EPGKYGR 484
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKL 552
LSGG+ Q +N DE +S LD A+ + S G++ LVV H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 553 STVRN-ADLIAVV 564
+ + +D+I VV
Sbjct: 219 AVLDYLSDIIHVV 231
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 456 LDATMDEVIXXXXXXXXHNFIRQLPE-------------GYETKVGERGALLSGGQKQXX 502
LD T+DE + F + +P GY K+G+ LSGG+ Q
Sbjct: 765 LDMTVDEAL---------EFFKNIPSIKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRI 814
Query: 503 XXXXXXXKNPV---ILLLDEATSALDSES-ETLVQNALDQASLGRTTLVVAHKLSTVRNA 558
K + +LDE T L E LV+ G T +V+ H L ++NA
Sbjct: 815 KLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNA 874
Query: 559 DLI 561
D I
Sbjct: 875 DHI 877
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 494 LSGGQKQXXXXXXXXXK--NPVILLLDEATSALDS-ESETLVQNALDQASLGRTTLVVAH 550
LSGG+ Q VI +LDE T L ++E L++ LG T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 551 KLSTVRNADLI 561
+RNAD I
Sbjct: 525 DEEVIRNADHI 535
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 1150 TILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSI 1198
T+ +LDE T L + + + E L R++ G T IV+ H L+ IK D I
Sbjct: 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHI 877
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 15/215 (6%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRRE 432
+K +LKV G+ V L+GA+G+GK+T ++ + A + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 433 -MGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGER 490
+ LV + +F ++ +N+ G + E I F R + ++ +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPR-----LKERLKQL 136
Query: 491 GALLSGGQKQXXXXXXXXXKNPVILLLDEATSALD----SESETLVQNALDQASLGRTTL 546
G LSGG++Q P +L DE + L SE ++Q ++Q G T L
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQK-INQE--GTTIL 193
Query: 547 VVAHK-LSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
+V L ++ A V++ G +V G ++L++
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 10/223 (4%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY-RK 1068
++ ++V G V L+G +G GK+T + I ++G + +G D+ H R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERG 1128
ALV + I+ + V+ L +I SL + + G
Sbjct: 82 GIALVPEGRRIFP----ELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 1129 VQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHR 1188
LSGG P +L DE + L V E + +I TTI++ +
Sbjct: 138 GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 1189 --LNTIKKLDSIALVADGRVVERGTYAQL---THMRGAFFNLA 1226
L +K ++ G++V G ++L +R A+ +A
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELLDNEXVRKAYLGVA 240
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 77/198 (38%), Gaps = 16/198 (8%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
K+E+R + Y D VL + +M ++ G V G +G GK+T++ I + +G
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXX 1110
+ +G+ + ++ K E +I I D
Sbjct: 66 IIYNGVPITKV------KGKIFFLPEEIIVPRKISVE------DYLKAVASLYGVKVNKN 113
Query: 1111 XFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQ 1170
+ +L+ + ++ +LS G N I +LD+ A+D S+ V
Sbjct: 114 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 1171 EALDRIMMGRTTIVVAHR 1188
+++ I+ + ++++ R
Sbjct: 174 KSILEILKEKGIVIISSR 191
>pdb|1ST8|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus
pdb|2ADD|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Sucrose
pdb|2ADE|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Fructose
pdb|2AEY|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With 2,5
Dideoxy-2,5-Immino-D-Mannitol
Length = 543
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 826 TRKVLLSSVSTN----FVKAQNRSTQIAVEAVINHRIVTSFGSAGKV 868
+R + S++ T FV RS +I++ +I+H I+ SFG+ GK
Sbjct: 444 SRSTVRSNIDTTSYGAFVDIDPRSEEISLRNLIDHSIIESFGAGGKT 490
>pdb|2AEZ|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q)
From Cichorium Intybus In Complex With 1-Kestose
Length = 543
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 826 TRKVLLSSVSTN----FVKAQNRSTQIAVEAVINHRIVTSFGSAGKV 868
+R + S++ T FV RS +I++ +I+H I+ SFG+ GK
Sbjct: 444 SRSTVRSNIDTTSYGAFVDIDPRSEEISLRNLIDHSIIESFGAGGKT 490
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 907 LDFWYGG-TLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKIL- 964
+D+ G TL+Q + A + +LV+ GK+IA A ++ SD+ T V +IL
Sbjct: 2 IDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILC 61
Query: 965 ----DRQ-SLIPGSSQAGDGTR 981
D+ LI G QAG TR
Sbjct: 62 PGFIDQHVHLIGGGGQAGPTTR 83
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 473 HNFIRQLPE---GYETKVGERGALLSGGQKQXXXXXXXXXKNPV---ILLLDEATSALDS 526
H ++R L + GY ++G+ LSGG+ Q K + +LDE T+ L
Sbjct: 841 HRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHF 899
Query: 527 ESETLVQNALDQ-ASLGRTTLVVAHKLSTVRNADLI 561
+ + N ++ G T +V+ H L ++ +D I
Sbjct: 900 DDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWI 935
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 1151 ILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALVAD------ 1203
+ +LDE + L + + + E L R+ +G T IVV H +TI+ D I +
Sbjct: 544 LYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHG 603
Query: 1204 GRVVERGTYAQL 1215
GR+V G Y +L
Sbjct: 604 GRIVHSGPYDEL 615
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 492 ALLSGGQKQXXXXXXXXXKN--PVILLLDEATSALDS-ESETLVQNALDQASLGRTTLVV 548
A LSGG+ Q V+ +LDE + L ++ L++ LG T +VV
Sbjct: 520 ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVV 579
Query: 549 AHKLSTVRNADLIAVVDNGC------LVEIGTHNDLINRID 583
H T+ +AD I + G +V G +++L+ D
Sbjct: 580 EHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKD 620
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 19/220 (8%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKW 428
+S L + +V+AG+ + LVG +G+GKST +A + K
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL 71
Query: 429 VRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVG 488
L Q+ F T + + + D T E++ + K+G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------ALDDKLG 121
Query: 489 ERGALLSGGQKQXXXXXXXXXK-----NPV--ILLLDEATSALDSESETLVQNALDQAS- 540
LSGG+ Q + NP +LLLD+ ++LD ++ + L S
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQ 181
Query: 541 LGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLI 579
G ++ +H L+ T+R+A ++ G ++ G +++
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNP---VILLLDEATSALDSESETLVQNALDQ 538
GY K+G+ LSGG+ Q + + +LDE T+ L + + + L +
Sbjct: 835 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 539 -ASLGRTTLVVAHKLSTVRNADLIAVVD------NGCLVEIGTHNDLINRIDGHYAKMAK 591
G T LV+ H L ++ AD I + G +V +GT ++ + H + K
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAI------ALVQRFYDA 409
LK+ ++K+ G VA+ G SGSGKST + AL Q+ + A
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRA 682
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNP---VILLLDEATSALDSESETLVQNALDQ 538
GY K+G+ LSGG+ Q + + +LDE T+ L + + + L +
Sbjct: 835 GY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 539 -ASLGRTTLVVAHKLSTVRNADLIAVVD------NGCLVEIGTHNDLINRIDGHYAKMAK 591
G T LV+ H L ++ AD I + G +V +GT ++ + H + K
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAI------ALVQRFYDA 409
LK+ ++K+ G VA+ G SGSGKST + AL Q+ + A
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRA 682
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 19/220 (8%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKW 428
+S L + +V+AG+ + LVG +G+GKST +A + K
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL 71
Query: 429 VRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVG 488
L Q+ F T + + + D T E++ + K+G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------ALDDKLG 121
Query: 489 ERGALLSGGQKQXXXXXXXXXK-----NPV--ILLLDEATSALDSESETLVQNALDQAS- 540
LSGG+ Q + NP +LLLD+ +LD ++ + L S
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQ 181
Query: 541 LGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLI 579
G ++ +H L+ T+R+A ++ G ++ G +++
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
LSGG K +N ILLLDE T+ LD+ + + N L+ + G T++ ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 1131 LSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLN 1190
LSGG P +++LDE T+ LD S + +AL G I++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1191 TIKKL-DSIALVADGRVVERG 1210
K L + + V DGR+ G
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 355 IEFEHVKFSYP--SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALV 403
++ +++F YP S+P + D N + +A++G +G+GKST I ++
Sbjct: 672 VKVTNMEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLS 553
LSGGQK + P +++LDE T+ LD +S + AL + G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 554 TVRN-ADLIAVVDNGCLVEIGTHN 576
+N + + V +G + G HN
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG-HN 982
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
LSGG K +N ILLLDE T+ LD+ + + N L+ + G T++ ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 603
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 1131 LSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLN 1190
LSGG P +++LDE T+ LD S + +AL G I++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 1191 TIKKL-DSIALVADGRVVERG 1210
K L + + V DGR G
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLS 553
LSGGQK + P +++LDE T+ LD +S + AL + G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 554 TVRN 557
+N
Sbjct: 960 FTKN 963
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 355 IEFEHVKFSYP--SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALV 403
++ + +F YP S+P + D N + +A++G +G+GKST I ++
Sbjct: 672 VKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
LSGG K +N ILLLDE T+ LD+ + + N L+ + G T++ ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISH 597
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 1131 LSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLN 1190
LSGG P +++LDE T+ LD S + +AL G I++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 1191 TIKKL-DSIALVADGRVVERG 1210
K L + + V DGR G
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLS 553
LSGGQK + P +++LDE T+ LD +S + AL + G +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 554 TVRN 557
+N
Sbjct: 954 FTKN 957
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 355 IEFEHVKFSYP--SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALV 403
++ + +F YP S+P + D N + +A++G +G+GKST I ++
Sbjct: 666 VKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVL 713
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 12/162 (7%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXL--QLKWV 429
+LK + ++ G L G +G+GK+T + ++ + A + + V
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 430 RREMGLVSQEHALF-----GTSIKDNIMFGKLDAT-MDEVIXXXXXXXXHNFIRQLPEGY 483
R+ +G VS H+L G + D ++ G + + + I H ++ + G
Sbjct: 96 RQHIGFVS--HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV--GX 151
Query: 484 ETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALD 525
K + LS G+KQ P +L+LDE + LD
Sbjct: 152 SAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 482 GYETKVGERGALLSGGQKQXXXXXXXXXKNP---VILLLDEATSALDSESETLVQNALDQ 538
GY K+G+ LSGG+ Q + + +LDE T+ L + + + L +
Sbjct: 533 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591
Query: 539 -ASLGRTTLVVAHKLSTVRNADLIAVVD------NGCLVEIGTHNDLINRIDGHYAKMAK 591
G T LV+ H L ++ AD I + G +V +GT ++ + H + K
Sbjct: 592 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 651
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAI------ALVQRFYDA 409
LK+ ++K+ G VA+ G SGSGKST + AL Q+ + A
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRA 380
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1150 TILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALVAD----- 1203
T+ +LDE T+ L + +Q L +++ G T I V H++ + D + +
Sbjct: 753 TVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGED 812
Query: 1204 -GRVVERGTYAQLTHMRGA 1221
GR+V +GT A++ G+
Sbjct: 813 GGRLVAQGTPAEVAQAAGS 831
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQXXXXXXXXXKNP---VILLLDEATSAL-DSESE 529
+ +R++ GY ++G+ LSGG+ Q ++ + +LDE T+ L ++ E
Sbjct: 712 DTLREVGLGY-LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVE 770
Query: 530 TLVQNALDQASLGRTTLVVAHKLSTVRNADLI------AVVDNGCLVEIGT 574
L + + G T + V HK+ V +D + A D G LV GT
Sbjct: 771 RLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGT 821
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 907 LDFWYGG-TLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKIL- 964
+D+ G TL+Q + A + +LV+ GK+IA A ++ SD+ T V +IL
Sbjct: 2 IDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILC 61
Query: 965 ----DRQ-SLIPGSSQAGDGTR 981
D+ LI G +AG TR
Sbjct: 62 PGFIDQHVHLIGGGGEAGPTTR 83
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 907 LDFWYGG-TLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKIL- 964
+D+ G TL+Q + A + +LV+ GK+IA A ++ SD+ T V +IL
Sbjct: 2 IDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILC 61
Query: 965 ----DRQ-SLIPGSSQAGDGTR 981
D+ LI G +AG TR
Sbjct: 62 PGFIDQHVHLIGGGGEAGPTTR 83
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 907 LDFWYGG-TLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKIL- 964
+D+ G TL+Q + A + +LV+ GK+IA A ++ SD+ T V +IL
Sbjct: 2 IDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILC 61
Query: 965 ----DRQ-SLIPGSSQAGDGTR 981
D+ LI G +AG TR
Sbjct: 62 PGFIDQHVHLIGGGGEAGPTTR 83
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 907 LDFWYGG-TLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKIL- 964
+D+ G TL+Q + A + +LV+ GK+IA A ++ SD+ T V +IL
Sbjct: 2 IDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILC 61
Query: 965 ----DRQ-SLIPGSSQAGDGTR 981
D+ LI G +AG TR
Sbjct: 62 PGFIDQHVHLIGGGGEAGPTTR 83
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 494 LSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGR--TTLVVAHK 551
LSGG+ Q K + +LD+ +S LD E +V A+ + + R T ++ H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 552 LS 553
LS
Sbjct: 446 LS 447
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 19/220 (8%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKW 428
+S L + +V+AG+ + LVG +G+GKST +A K
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKL 71
Query: 429 VRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVG 488
L Q+ F T + + + D T E++ + K+G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------ALDDKLG 121
Query: 489 ERGALLSGGQKQXXXXXXXXXK-----NPV--ILLLDEATSALDSESETLVQNALDQ-AS 540
LSGG+ Q + NP +LLLDE ++LD ++ + L
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 541 LGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLI 579
G + +H L+ T+R+A ++ G + G +++
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 27/224 (12%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKW 428
+S L + +V+AG+ + LVG +G+GKST +A K
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKL 71
Query: 429 VRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVG 488
L Q+ F T + + + D T E++ + K+G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------ALDDKLG 121
Query: 489 ERGALLSGGQKQXXXXXXXXXK-----NPV--ILLLDEATSALDSESETLVQNALDQ--A 539
LSGG+ Q + NP +LLLDE ++LD Q+ALD+ +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILS 177
Query: 540 SLGRTTLVV---AHKLS-TVRNADLIAVVDNGCLVEIGTHNDLI 579
+L + L + +H L+ T+R+A ++ G + G +++
Sbjct: 178 ALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,158,125
Number of Sequences: 62578
Number of extensions: 1101099
Number of successful extensions: 3132
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2621
Number of HSP's gapped (non-prelim): 335
length of query: 1230
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1120
effective length of database: 8,089,757
effective search space: 9060527840
effective search space used: 9060527840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)