BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000910
         (1229 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
            Novosphingobium Sp. Ka1
 pdb|3GKQ|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
            Novosphingobium Sp. Ka1
 pdb|3GKQ|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
            Novosphingobium Sp. Ka1
 pdb|3GKQ|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
            Novosphingobium Sp. Ka1
 pdb|3GKQ|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
            Novosphingobium Sp. Ka1
 pdb|3GKQ|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
            Novosphingobium Sp. Ka1
          Length = 389

 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 1065 LAEQSKKSAQIFGENVAEGVCDTYLGHGSNDLDMHKSMRLSSPVQLVSKDEFPHNFEGTP 1124
            +AE S    Q+ GE V     D  + H   D  +H+ + LS  V+  SK      + G  
Sbjct: 41   VAEASPVPVQLLGEKVLLNRVDGVV-HAIADRCLHRGVTLSDKVECYSKATISCWYHGWT 99

Query: 1125 VNTANGAAVPIRSSPTS 1141
                NG  V I ++PTS
Sbjct: 100  YRWDNGKLVDILTNPTS 116


>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 32.3 bits (72), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPI 176
           KQ     AIE  +KA EL P++ E  +   N  Y+      +Y+E ++  ++AL ++   
Sbjct: 55  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG----DYDEAIEYYQKALELDPNN 110

Query: 177 DPAKESLQDESQQK 190
             AK++L +  Q++
Sbjct: 111 AEAKQNLGNAKQKQ 124


>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 91

 Score = 32.0 bits (71), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPI 176
           KQ     AIE  +KA EL P++ E  +   N  Y+      +Y+E ++  ++AL ++   
Sbjct: 21  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG----DYDEAIEYYQKALELDPNN 76

Query: 177 DPAKESLQDESQQK 190
             AK++L +  Q++
Sbjct: 77  AEAKQNLGNAKQKQ 90


>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
          Length = 125

 Score = 31.2 bits (69), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPI 176
           KQ   + AIE  +KA EL P++ +  +   N  Y+      +Y++ +++ ++AL ++   
Sbjct: 55  KQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQG----DYQKAIEDYQKALELDPNN 110

Query: 177 DPAKESLQDESQQK 190
             AK++L +  Q++
Sbjct: 111 AKAKQNLGNAKQKQ 124


>pdb|2FB6|A Chain A, Structure Of Conserved Protein Of Unknown Function Bt1422
           From Bacteroides Thetaiotaomicron
          Length = 117

 Score = 30.8 bits (68), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 441 WKPLDIV---AAVKMLGRDKTKSRDTEVSEDFYSGNHIEECDDC 481
           WK ++I+   A+VK++  D      TE+ E   SG  IE C DC
Sbjct: 39  WKHINIILWGASVKLVANDT--QVQTEILEXLQSGITIEACQDC 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,393,844
Number of Sequences: 62578
Number of extensions: 1297179
Number of successful extensions: 2316
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2303
Number of HSP's gapped (non-prelim): 15
length of query: 1229
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1119
effective length of database: 8,089,757
effective search space: 9052438083
effective search space used: 9052438083
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)