BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000910
         (1229 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q72QU2|CLPB_LEPIC Chaperone protein ClpB OS=Leptospira interrogans serogroup
           Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
           L1-130) GN=clpB PE=3 SV=1
          Length = 860

 Score = 38.5 bits (88), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query: 629 ERINSIDDANSVSPSLEIKETIVLNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHE 688
           E ++  D AN VS    I  + +L G+ + LLL E +L T++I  D  +  V+ A  R  
Sbjct: 534 EEVSEEDIANIVSRWTGIPVSKMLQGERAKLLLMEDVLKTKVIGQDHALRLVSEAVQRSR 593

Query: 689 NGVAEDADALLTWIFAGPSS 708
            G+A+    + T++F GP+ 
Sbjct: 594 AGIADPNRPIGTFLFLGPTG 613


>sp|Q8F509|CLPB_LEPIN Chaperone protein ClpB OS=Leptospira interrogans serogroup
           Icterohaemorrhagiae serovar Lai (strain 56601) GN=clpB
           PE=3 SV=1
          Length = 860

 Score = 38.5 bits (88), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query: 629 ERINSIDDANSVSPSLEIKETIVLNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHE 688
           E ++  D AN VS    I  + +L G+ + LLL E +L T++I  D  +  V+ A  R  
Sbjct: 534 EEVSEEDIANIVSRWTGIPVSKMLQGERAKLLLMEDVLKTKVIGQDHALRLVSEAVQRSR 593

Query: 689 NGVAEDADALLTWIFAGPSS 708
            G+A+    + T++F GP+ 
Sbjct: 594 AGIADPNRPIGTFLFLGPTG 613


>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3
           OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2
          Length = 1241

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 172 IENPIDPAKESLQDES----QQKILTADARIAHVQSELRSLIQKSNIASISTWMKNLGTG 227
           IEN +     S+   S     QK+ TA    A +QS L+      +IA   T + NL   
Sbjct: 614 IENGVTSMTSSVMPTSAVSVSQKVRTASTDTASLQSLLK------DIAVNPTMLLNLLKM 667

Query: 228 EEKFRLIPIRRVAEDPMEVRLVQARRPNEIKKATKTPEERRKEIEVRVAAARLLQQKS-E 286
            E+ + +P  +  + PM+ R       + ++    TP        + + A+  L   S  
Sbjct: 668 GERQK-VP-EKAIQKPMDPRRAAQLPGSSVQPGVSTP--------LSIPASNALAANSLN 717

Query: 287 TGQLYQNNEGERNVDSGSGGLEKRERERRKHGSNLRRNRSKEERRDFVRSYWNSMSLEMK 346
           +G L  +++     +SGS  ++ R+  R  HGS L+R  S  E++  V       +L MK
Sbjct: 718 SGVLQDSSQNAPAAESGSIRMKPRDPRRILHGSTLQRTDSSMEKQTKVNDPSTLGTLTMK 777


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,716,803
Number of Sequences: 539616
Number of extensions: 19050808
Number of successful extensions: 58331
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 462
Number of HSP's that attempted gapping in prelim test: 56746
Number of HSP's gapped (non-prelim): 1986
length of query: 1229
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1100
effective length of database: 121,958,995
effective search space: 134154894500
effective search space used: 134154894500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)