Query 000910
Match_columns 1229
No_of_seqs 74 out of 76
Neff 3.8
Searched_HMMs 46136
Date Tue Apr 2 00:46:58 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04780 DUF629: Protein of un 100.0 9E-153 2E-157 1297.7 33.8 464 332-866 1-465 (466)
2 KOG1887 Ubiquitin carboxyl-ter 100.0 1.4E-66 3E-71 611.7 15.7 381 535-946 2-384 (806)
3 PF04781 DUF627: Protein of un 100.0 8.2E-29 1.8E-33 238.6 10.9 107 62-175 1-110 (111)
4 KOG1887 Ubiquitin carboxyl-ter 99.0 5.5E-11 1.2E-15 143.5 -0.9 359 805-1205 8-366 (806)
5 PRK15359 type III secretion sy 97.4 0.0023 4.9E-08 64.2 12.8 98 63-179 30-127 (144)
6 PLN03088 SGT1, suppressor of 97.1 0.0031 6.7E-08 72.3 11.8 99 62-179 7-105 (356)
7 TIGR02552 LcrH_SycD type III s 96.8 0.028 6E-07 53.9 13.6 97 59-173 19-115 (135)
8 PRK11189 lipoprotein NlpI; Pro 96.4 0.023 4.9E-07 63.3 11.5 100 61-179 68-167 (296)
9 PRK10803 tol-pal system protei 96.3 0.068 1.5E-06 59.7 14.1 101 57-172 142-246 (263)
10 PRK12370 invasion protein regu 96.2 0.038 8.2E-07 66.7 12.3 93 69-180 316-408 (553)
11 cd00189 TPR Tetratricopeptide 96.1 0.13 2.8E-06 42.5 11.6 93 62-172 5-97 (100)
12 PF13894 zf-C2H2_4: C2H2-type 96.1 0.0043 9.4E-08 43.6 2.2 24 389-412 1-24 (24)
13 TIGR02795 tol_pal_ybgF tol-pal 96.0 0.096 2.1E-06 48.2 11.5 97 61-172 6-105 (119)
14 PRK10370 formate-dependent nit 95.6 0.12 2.7E-06 54.9 11.9 98 65-177 81-178 (198)
15 PF00096 zf-C2H2: Zinc finger, 95.6 0.0078 1.7E-07 43.0 2.0 23 389-412 1-23 (23)
16 PF13432 TPR_16: Tetratricopep 95.6 0.035 7.5E-07 47.6 6.2 63 62-138 2-64 (65)
17 PRK12370 invasion protein regu 95.4 0.066 1.4E-06 64.7 10.0 99 66-182 347-445 (553)
18 TIGR02521 type_IV_pilW type IV 94.9 0.26 5.6E-06 49.0 11.0 97 58-172 32-128 (234)
19 COG4783 Putative Zn-dependent 94.7 0.34 7.5E-06 58.3 12.9 101 63-182 312-412 (484)
20 TIGR00990 3a0801s09 mitochondr 94.7 0.32 6.9E-06 59.3 13.0 102 64-172 338-462 (615)
21 PRK15174 Vi polysaccharide exp 94.6 0.18 3.8E-06 62.6 10.9 100 63-181 48-147 (656)
22 TIGR00990 3a0801s09 mitochondr 94.6 0.59 1.3E-05 57.0 15.2 113 60-179 368-503 (615)
23 PF13371 TPR_9: Tetratricopept 94.6 0.18 4E-06 43.8 8.0 69 66-148 4-72 (73)
24 PRK15174 Vi polysaccharide exp 94.3 0.22 4.9E-06 61.7 10.9 101 65-180 220-320 (656)
25 TIGR03302 OM_YfiO outer membra 94.3 0.8 1.7E-05 48.3 13.5 107 64-178 77-200 (235)
26 KOG2076 RNA polymerase III tra 93.9 0.51 1.1E-05 60.1 12.6 113 56-172 138-270 (895)
27 PF13414 TPR_11: TPR repeat; P 93.8 0.26 5.5E-06 42.6 7.2 65 94-172 3-67 (69)
28 PRK15179 Vi polysaccharide bio 93.6 0.35 7.6E-06 60.9 10.6 106 57-181 51-157 (694)
29 PRK02603 photosystem I assembl 93.3 0.77 1.7E-05 47.0 10.9 100 61-171 39-141 (172)
30 cd05804 StaR_like StaR_like; a 93.2 1.7 3.7E-05 48.3 14.2 111 59-173 45-178 (355)
31 PF09976 TPR_21: Tetratricopep 93.2 1.6 3.4E-05 43.7 12.5 92 62-168 16-110 (145)
32 PRK10370 formate-dependent nit 93.1 0.6 1.3E-05 49.8 10.1 96 70-181 52-147 (198)
33 PRK09782 bacteriophage N4 rece 93.1 1.2 2.7E-05 58.2 14.6 48 122-173 660-707 (987)
34 COG3063 PilF Tfp pilus assembl 93.0 0.8 1.7E-05 51.2 11.1 107 57-181 35-144 (250)
35 PRK15179 Vi polysaccharide bio 93.0 0.55 1.2E-05 59.2 11.1 95 67-180 96-190 (694)
36 PF13414 TPR_11: TPR repeat; P 92.7 0.47 1E-05 40.9 7.2 63 61-136 7-69 (69)
37 PF12895 Apc3: Anaphase-promot 91.8 0.83 1.8E-05 41.4 8.0 83 70-169 2-84 (84)
38 TIGR02917 PEP_TPR_lipo putativ 91.7 1 2.2E-05 54.2 10.9 88 67-172 169-256 (899)
39 TIGR02521 type_IV_pilW type IV 91.6 1.8 4E-05 43.0 10.8 105 61-172 69-198 (234)
40 PF09295 ChAPs: ChAPs (Chs5p-A 91.4 1.1 2.4E-05 53.2 10.4 81 68-166 211-291 (395)
41 PF13525 YfiO: Outer membrane 91.1 4.6 9.9E-05 43.0 13.8 84 58-141 43-126 (203)
42 PRK09782 bacteriophage N4 rece 91.1 1.1 2.4E-05 58.6 11.0 90 71-180 590-679 (987)
43 PF13512 TPR_18: Tetratricopep 91.0 1.1 2.5E-05 46.5 8.9 83 58-140 48-134 (142)
44 TIGR03302 OM_YfiO outer membra 90.9 2.1 4.5E-05 45.2 10.9 109 58-178 34-149 (235)
45 TIGR02917 PEP_TPR_lipo putativ 90.8 2.4 5.3E-05 51.1 12.7 103 63-172 742-866 (899)
46 CHL00033 ycf3 photosystem I as 90.5 2.5 5.4E-05 43.0 10.8 101 61-172 39-142 (168)
47 PF13432 TPR_16: Tetratricopep 90.5 0.71 1.5E-05 39.6 5.8 53 121-178 13-65 (65)
48 PRK10747 putative protoheme IX 90.3 1.7 3.8E-05 50.6 10.7 85 69-172 306-390 (398)
49 PRK10049 pgaA outer membrane p 90.2 1.6 3.5E-05 55.2 11.0 103 62-183 364-466 (765)
50 PF13525 YfiO: Outer membrane 89.7 5.3 0.00011 42.5 12.8 70 61-141 9-78 (203)
51 PRK11788 tetratricopeptide rep 89.5 4.2 9E-05 45.8 12.5 93 62-172 185-278 (389)
52 COG5010 TadD Flp pilus assembl 89.4 1.9 4.1E-05 48.7 9.6 92 63-172 106-197 (257)
53 PRK11788 tetratricopeptide rep 89.2 4.3 9.4E-05 45.6 12.3 99 59-172 143-243 (389)
54 PF04959 ARS2: Arsenite-resist 88.8 0.19 4.1E-06 55.1 1.4 34 382-416 72-105 (214)
55 PLN03098 LPA1 LOW PSII ACCUMUL 88.6 3.8 8.1E-05 49.7 11.8 69 56-135 74-142 (453)
56 PF14559 TPR_19: Tetratricopep 88.3 1.6 3.4E-05 37.5 6.4 67 67-147 1-67 (68)
57 KOG0553 TPR repeat-containing 88.2 0.9 2E-05 52.2 6.2 55 114-172 90-144 (304)
58 PRK11447 cellulose synthase su 87.6 3.9 8.5E-05 54.1 12.3 56 121-181 477-532 (1157)
59 TIGR00540 hemY_coli hemY prote 87.6 9.3 0.0002 44.8 14.1 106 59-183 86-192 (409)
60 PRK10049 pgaA outer membrane p 87.4 3.2 7E-05 52.6 11.0 90 64-172 56-145 (765)
61 CHL00033 ycf3 photosystem I as 87.3 4.6 0.0001 41.1 10.1 76 61-139 76-154 (168)
62 PRK15363 pathogenicity island 87.1 8.2 0.00018 41.0 12.0 94 62-173 40-133 (157)
63 PRK11447 cellulose synthase su 87.1 5.2 0.00011 53.1 13.0 88 62-171 578-665 (1157)
64 PF12874 zf-met: Zinc-finger o 87.0 0.39 8.4E-06 35.0 1.6 23 389-411 1-23 (25)
65 PF13371 TPR_9: Tetratricopept 86.8 1.7 3.7E-05 37.8 5.9 52 122-178 12-63 (73)
66 COG4235 Cytochrome c biogenesi 86.8 3.9 8.5E-05 47.0 10.1 86 72-172 137-222 (287)
67 PF13429 TPR_15: Tetratricopep 86.7 2.4 5.3E-05 46.3 8.3 55 122-181 163-217 (280)
68 PF12756 zf-C2H2_2: C2H2 type 86.2 0.51 1.1E-05 43.3 2.4 25 388-412 50-74 (100)
69 PRK15359 type III secretion sy 86.0 4.2 9.1E-05 41.1 8.9 78 61-152 62-139 (144)
70 PF13429 TPR_15: Tetratricopep 85.9 2.4 5.2E-05 46.4 7.7 99 64-181 153-251 (280)
71 PLN03088 SGT1, suppressor of 85.4 4.8 0.0001 46.8 10.2 79 61-153 40-118 (356)
72 PF12688 TPR_5: Tetratrico pep 85.1 11 0.00024 38.0 11.2 96 61-171 5-103 (120)
73 PRK10866 outer membrane biogen 85.0 3.7 8.1E-05 45.4 8.7 71 60-141 35-105 (243)
74 TIGR02552 LcrH_SycD type III s 85.0 5.1 0.00011 38.5 8.6 83 80-181 6-88 (135)
75 PRK11906 transcriptional regul 84.8 4.1 9E-05 49.4 9.5 83 72-172 319-401 (458)
76 PRK10866 outer membrane biogen 84.6 4.5 9.6E-05 44.8 9.0 84 56-139 68-158 (243)
77 PF05605 zf-Di19: Drought indu 84.4 0.76 1.7E-05 39.8 2.5 25 390-415 4-28 (54)
78 PHA00616 hypothetical protein 83.7 0.53 1.2E-05 40.3 1.2 25 390-414 3-27 (44)
79 COG4105 ComL DNA uptake lipopr 82.8 4.9 0.00011 45.5 8.5 79 58-139 72-150 (254)
80 smart00355 ZnF_C2H2 zinc finge 82.4 1.1 2.3E-05 31.5 2.1 24 389-413 1-24 (26)
81 PRK02603 photosystem I assembl 82.1 8.2 0.00018 39.6 9.2 75 62-139 77-154 (172)
82 cd05804 StaR_like StaR_like; a 81.8 11 0.00024 42.0 10.9 95 60-172 117-215 (355)
83 PHA02768 hypothetical protein; 81.0 0.91 2E-05 40.6 1.6 23 390-413 7-29 (55)
84 KOG2076 RNA polymerase III tra 80.3 18 0.00039 47.0 12.9 119 52-199 411-529 (895)
85 PF13512 TPR_18: Tetratricopep 80.1 5.8 0.00013 41.5 7.4 79 62-153 15-93 (142)
86 PRK11189 lipoprotein NlpI; Pro 79.9 16 0.00034 41.2 11.2 90 64-172 105-194 (296)
87 TIGR02795 tol_pal_ybgF tol-pal 79.6 7.3 0.00016 35.8 7.2 69 61-140 43-111 (119)
88 PF12171 zf-C2H2_jaz: Zinc-fin 79.6 0.78 1.7E-05 34.5 0.7 23 389-411 2-24 (27)
89 PRK10153 DNA-binding transcrip 79.1 33 0.00071 42.4 14.4 91 73-173 358-450 (517)
90 TIGR00540 hemY_coli hemY prote 78.8 17 0.00037 42.6 11.6 99 57-172 263-364 (409)
91 PF03704 BTAD: Bacterial trans 78.4 29 0.00064 34.4 11.5 118 54-172 3-132 (146)
92 PF14559 TPR_19: Tetratricopep 77.8 4.5 9.8E-05 34.7 4.9 48 121-172 7-54 (68)
93 PF13281 DUF4071: Domain of un 77.3 29 0.00064 41.5 12.8 87 63-155 185-275 (374)
94 PF13912 zf-C2H2_6: C2H2-type 76.8 1.4 3E-05 32.7 1.3 23 390-412 3-25 (27)
95 KOG2002 TPR-containing nuclear 76.7 8.3 0.00018 50.2 8.6 113 56-183 163-275 (1018)
96 KOG1126 DNA-binding cell divis 76.2 6.2 0.00014 49.4 7.2 104 70-181 434-560 (638)
97 PLN02789 farnesyltranstransfer 76.1 19 0.0004 41.8 10.7 89 69-172 49-137 (320)
98 PF13913 zf-C2HC_2: zinc-finge 76.1 1.7 3.7E-05 32.8 1.6 19 390-409 4-22 (25)
99 PF13174 TPR_6: Tetratricopept 75.6 3.3 7.2E-05 30.7 3.1 28 63-90 6-33 (33)
100 COG1729 Uncharacterized protei 74.2 31 0.00066 39.6 11.4 87 58-155 142-231 (262)
101 KOG2053 Mitochondrial inherita 72.6 48 0.001 43.4 13.6 110 52-183 4-113 (932)
102 COG4049 Uncharacterized protei 72.4 1.8 3.9E-05 39.1 1.1 30 387-416 16-45 (65)
103 KOG0376 Serine-threonine phosp 71.2 2.5 5.3E-05 51.3 2.2 56 114-173 13-68 (476)
104 PRK10747 putative protoheme IX 70.6 39 0.00085 39.7 11.7 108 62-178 158-296 (398)
105 PRK14574 hmsH outer membrane p 68.8 31 0.00067 45.0 11.2 112 57-172 34-165 (822)
106 PHA00733 hypothetical protein 68.7 3.4 7.4E-05 42.1 2.3 25 389-413 100-124 (128)
107 PF05605 zf-Di19: Drought indu 68.7 2.8 6.2E-05 36.3 1.5 42 352-412 12-53 (54)
108 PLN03098 LPA1 LOW PSII ACCUMUL 68.6 19 0.00041 43.9 8.7 69 87-173 71-142 (453)
109 PF14863 Alkyl_sulf_dimr: Alky 67.7 27 0.00059 36.5 8.6 66 59-127 72-137 (141)
110 PF06552 TOM20_plant: Plant sp 66.5 96 0.0021 34.2 12.5 81 55-138 26-113 (186)
111 COG4105 ComL DNA uptake lipopr 66.4 21 0.00045 40.7 8.0 71 62-143 39-109 (254)
112 PF13945 NST1: Salt tolerance 66.4 3.4 7.3E-05 45.1 1.8 34 328-361 101-134 (190)
113 PF12756 zf-C2H2_2: C2H2 type 65.4 2.1 4.6E-05 39.2 0.1 26 391-416 2-27 (100)
114 PRK10153 DNA-binding transcrip 65.4 41 0.00089 41.6 10.9 69 94-179 420-488 (517)
115 PF13428 TPR_14: Tetratricopep 65.0 13 0.00028 30.4 4.6 36 63-101 7-42 (44)
116 KOG1125 TPR repeat-containing 64.8 13 0.00028 46.3 6.4 89 67-173 440-528 (579)
117 KOG2610 Uncharacterized conser 64.5 27 0.00058 41.7 8.5 99 64-181 110-212 (491)
118 KOG4642 Chaperone-dependent E3 63.6 19 0.00041 41.2 6.9 102 117-223 56-167 (284)
119 KOG0550 Molecular chaperone (D 62.6 35 0.00075 41.6 9.1 57 114-174 258-318 (486)
120 PLN02789 farnesyltranstransfer 62.2 57 0.0012 38.0 10.7 85 72-172 87-171 (320)
121 COG5010 TadD Flp pilus assembl 61.2 69 0.0015 36.8 10.8 122 63-207 72-193 (257)
122 PF13431 TPR_17: Tetratricopep 61.2 7.6 0.00017 30.8 2.5 33 127-163 1-33 (34)
123 COG4235 Cytochrome c biogenesi 61.1 86 0.0019 36.6 11.7 103 66-183 165-267 (287)
124 KOG0553 TPR repeat-containing 59.0 49 0.0011 38.7 9.3 89 66-172 90-178 (304)
125 smart00451 ZnF_U1 U1-like zinc 57.8 7.8 0.00017 30.1 2.0 23 390-412 5-27 (35)
126 PRK14574 hmsH outer membrane p 57.6 93 0.002 40.8 12.5 107 58-183 417-523 (822)
127 PRK10803 tol-pal system protei 55.8 33 0.00071 38.9 7.2 64 65-139 188-251 (263)
128 cd00189 TPR Tetratricopeptide 55.6 58 0.0013 26.6 7.0 63 61-137 38-100 (100)
129 KOG0548 Molecular co-chaperone 55.6 85 0.0019 39.2 11.0 91 64-172 365-455 (539)
130 KOG4162 Predicted calmodulin-b 53.3 76 0.0016 41.2 10.3 83 92-178 431-513 (799)
131 PF06552 TOM20_plant: Plant sp 50.4 1.5E+02 0.0032 32.8 10.7 94 75-172 9-109 (186)
132 COG1592 Rubrerythrin [Energy p 50.0 13 0.00029 39.9 2.9 27 370-399 119-145 (166)
133 KOG4642 Chaperone-dependent E3 49.6 23 0.00049 40.6 4.7 51 118-172 23-73 (284)
134 PF09976 TPR_21: Tetratricopep 49.4 2E+02 0.0043 28.9 10.9 100 55-170 46-145 (145)
135 PHA00732 hypothetical protein 49.1 11 0.00024 35.7 2.0 24 390-413 3-26 (79)
136 KOG0624 dsRNA-activated protei 47.8 2.5E+02 0.0054 34.2 12.6 103 52-172 33-135 (504)
137 KOG4626 O-linked N-acetylgluco 47.8 2E+02 0.0044 37.1 12.4 78 121-203 438-518 (966)
138 PF02892 zf-BED: BED zinc fing 47.2 13 0.00028 30.7 1.9 30 384-413 12-45 (45)
139 KOG0547 Translocase of outer m 47.0 96 0.0021 38.8 9.5 113 53-173 356-492 (606)
140 KOG4234 TPR repeat-containing 46.9 3.5E+02 0.0075 31.0 12.9 99 66-181 104-202 (271)
141 PRK11906 transcriptional regul 46.7 2.3E+02 0.0049 35.2 12.6 116 55-181 253-375 (458)
142 PF02259 FAT: FAT domain; Int 45.8 1.9E+02 0.0042 32.3 11.2 100 56-155 183-308 (352)
143 PF09237 GAGA: GAGA factor; I 44.4 16 0.00034 32.8 2.0 26 388-413 24-49 (54)
144 KOG1126 DNA-binding cell divis 44.0 1.2E+02 0.0026 38.7 10.0 51 55-108 317-367 (638)
145 smart00614 ZnF_BED BED zinc fi 42.7 19 0.00041 30.9 2.2 28 387-414 17-49 (50)
146 KOG1840 Kinesin light chain [C 42.5 2.4E+02 0.0051 35.4 12.1 143 64-213 248-398 (508)
147 PF09538 FYDLN_acid: Protein o 42.3 9.7 0.00021 38.2 0.4 14 389-402 10-23 (108)
148 KOG1155 Anaphase-promoting com 40.9 1.2E+02 0.0026 37.7 9.1 59 55-139 340-398 (559)
149 PF01927 Mut7-C: Mut7-C RNAse 40.7 13 0.00028 38.4 1.1 21 388-409 124-144 (147)
150 PF02891 zf-MIZ: MIZ/SP-RING z 40.1 8 0.00017 33.7 -0.5 19 378-396 31-49 (50)
151 PF13226 DUF4034: Domain of un 38.8 77 0.0017 36.7 6.8 73 76-155 62-145 (277)
152 PRK15363 pathogenicity island 38.7 2.1E+02 0.0046 30.8 9.5 83 121-212 51-133 (157)
153 COG2956 Predicted N-acetylgluc 37.4 1.4E+02 0.003 35.8 8.6 86 71-171 155-242 (389)
154 PF12013 DUF3505: Protein of u 37.3 27 0.00059 34.1 2.7 31 382-413 5-35 (109)
155 PRK15331 chaperone protein Sic 35.7 3E+02 0.0064 30.0 10.1 88 53-154 33-120 (165)
156 PRK14720 transcript cleavage f 35.4 4.7E+02 0.01 35.2 13.7 107 65-185 38-158 (906)
157 PF00515 TPR_1: Tetratricopept 34.4 66 0.0014 24.3 3.8 33 95-138 2-34 (34)
158 PF13424 TPR_12: Tetratricopep 33.5 84 0.0018 27.8 4.9 64 94-172 5-75 (78)
159 COG3898 Uncharacterized membra 33.3 4.6E+02 0.01 32.5 12.0 123 66-203 197-320 (531)
160 TIGR02300 FYDLN_acid conserved 33.2 17 0.00037 37.7 0.6 14 389-402 10-23 (129)
161 PF12895 Apc3: Anaphase-promot 32.6 74 0.0016 28.9 4.5 42 63-108 31-72 (84)
162 KOG0547 Translocase of outer m 32.4 6.5E+02 0.014 32.0 13.3 104 55-173 426-533 (606)
163 KOG4162 Predicted calmodulin-b 31.5 1.7E+02 0.0037 38.2 8.6 80 62-155 655-734 (799)
164 PF07719 TPR_2: Tetratricopept 31.5 78 0.0017 23.5 3.8 32 95-137 2-33 (34)
165 cd02679 MIT_spastin MIT: domai 31.0 1.4E+02 0.003 28.7 6.1 44 120-175 4-47 (79)
166 PF09295 ChAPs: ChAPs (Chs5p-A 30.9 2.8E+02 0.0062 33.6 10.1 82 70-172 182-263 (395)
167 PF10373 EST1_DNA_bind: Est1 D 30.7 57 0.0012 35.4 4.1 56 124-183 1-56 (278)
168 KOG4648 Uncharacterized conser 30.6 1.2E+02 0.0026 36.6 6.7 61 97-172 100-160 (536)
169 PF04733 Coatomer_E: Coatomer 29.7 3.2E+02 0.007 31.5 9.9 52 122-178 184-235 (290)
170 PF12907 zf-met2: Zinc-binding 29.6 12 0.00026 31.7 -0.9 26 390-415 3-31 (40)
171 PF15297 CKAP2_C: Cytoskeleton 29.3 13 0.00027 44.1 -1.2 53 334-392 82-146 (353)
172 KOG1156 N-terminal acetyltrans 29.2 1.7E+02 0.0037 37.6 8.1 94 62-173 12-105 (700)
173 KOG1127 TPR repeat-containing 28.9 2.7E+02 0.0058 37.8 9.8 101 58-172 3-103 (1238)
174 PF12688 TPR_5: Tetratrico pep 28.9 3.4E+02 0.0074 27.6 8.8 34 57-90 38-71 (120)
175 PF14853 Fis1_TPR_C: Fis1 C-te 28.6 1.7E+02 0.0037 26.1 5.8 42 64-108 8-49 (53)
176 PF14938 SNAP: Soluble NSF att 28.2 6E+02 0.013 28.6 11.6 98 61-171 78-183 (282)
177 KOG4626 O-linked N-acetylgluco 28.1 62 0.0013 41.3 4.1 14 124-137 339-352 (966)
178 PF09986 DUF2225: Uncharacteri 28.1 3.1E+02 0.0068 30.4 9.1 71 99-173 116-195 (214)
179 PF12569 NARP1: NMDA receptor- 28.0 3E+02 0.0065 34.5 9.9 88 61-166 198-285 (517)
180 PF03470 zf-XS: XS zinc finger 27.7 37 0.0008 29.5 1.5 18 391-409 1-22 (43)
181 KOG0543 FKBP-type peptidyl-pro 26.6 1E+03 0.023 29.3 13.5 101 65-173 216-321 (397)
182 COG4649 Uncharacterized protei 26.1 9.4E+02 0.02 27.2 11.9 128 61-207 62-192 (221)
183 PF09613 HrpB1_HrpK: Bacterial 25.9 2E+02 0.0043 31.1 6.8 31 61-91 48-78 (160)
184 COG1656 Uncharacterized conser 25.5 42 0.00091 36.2 1.9 31 387-418 129-159 (165)
185 PHA00733 hypothetical protein 25.5 45 0.00098 34.2 2.0 22 389-410 74-95 (128)
186 KOG1128 Uncharacterized conser 25.4 3.4E+02 0.0073 35.6 9.7 87 69-173 497-583 (777)
187 TIGR03831 YgiT_finger YgiT-typ 24.7 27 0.00059 28.5 0.3 14 388-401 32-45 (46)
188 KOG1842 FYVE finger-containing 24.2 35 0.00077 41.6 1.1 28 389-416 16-43 (505)
189 PF12037 DUF3523: Domain of un 24.1 1.7E+02 0.0036 34.1 6.3 33 49-81 26-58 (276)
190 PF04733 Coatomer_E: Coatomer 22.9 5.1E+02 0.011 29.9 9.9 77 55-148 164-241 (290)
191 KOG1173 Anaphase-promoting com 22.7 3.9E+02 0.0085 34.2 9.4 95 71-172 394-518 (611)
192 KOG1155 Anaphase-promoting com 22.6 7.2E+02 0.016 31.5 11.3 117 63-189 268-406 (559)
193 KOG1174 Anaphase-promoting com 22.3 3.6E+02 0.0078 33.5 8.7 88 66-171 309-396 (564)
194 KOG2002 TPR-containing nuclear 21.7 2.9E+02 0.0064 37.1 8.4 106 69-179 624-751 (1018)
195 PF10300 DUF3808: Protein of u 21.7 3.7E+02 0.0079 33.0 8.9 79 69-164 245-326 (468)
196 KOG3060 Uncharacterized conser 21.4 9.6E+02 0.021 28.4 11.4 108 66-181 61-191 (289)
197 PF13428 TPR_14: Tetratricopep 21.4 1E+02 0.0022 25.2 2.9 26 122-147 18-43 (44)
198 KOG2169 Zn-finger transcriptio 21.1 67 0.0015 40.9 2.7 98 339-450 292-397 (636)
199 COG5236 Uncharacterized conser 20.9 50 0.0011 39.3 1.4 28 390-417 222-249 (493)
200 PF02259 FAT: FAT domain; Int 20.7 3.3E+02 0.0071 30.5 7.7 67 69-138 270-342 (352)
201 KOG2011 Sister chromatid cohes 20.6 84 0.0018 42.1 3.5 81 695-798 198-278 (1048)
202 PRK10941 hypothetical protein; 20.5 3.1E+02 0.0067 31.6 7.6 62 67-142 191-252 (269)
203 KOG1840 Kinesin light chain [C 20.4 9.7E+02 0.021 30.3 12.2 107 52-173 194-313 (508)
No 1
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=100.00 E-value=8.7e-153 Score=1297.67 Aligned_cols=464 Identities=48% Similarity=0.755 Sum_probs=442.3
Q ss_pred HHHHHhhccCCHHhHcceeEeehhhHHHHHhhhcCchHHHHHHHHHHHHHhcCceeEeecCcCccccCChhHHHHHHHhh
Q 000910 332 DFVRSYWNSMSLEMKRELLKVKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQQ 411 (1229)
Q Consensus 332 ~~Vr~YW~SMt~E~Kr~FLsVrI~eLkshy~~v~d~~AadtLsEAL~FaKknkSWRFWiCp~CskKF~Dt~Sl~~Hm~qk 411 (1229)
++||+||++||+|+||+||+|+|++|++||.+++++.|+++|++||+|||+|++|||||||+|++||+|+++|++||+++
T Consensus 1 ~~vr~yW~sms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~e 80 (466)
T PF04780_consen 1 DRVRSYWNSMSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQE 80 (466)
T ss_pred CchhHhhccCCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCchhhhccCccccHHHHhhhcCCCCccccHHHHHHHhhhcccccCCcccccccccCCCccccccccccccCCCcc
Q 000910 412 HMGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAVKMLGRDKTKSRDTEVSEDFYSGNHIEECDDCFKDALDSSPE 491 (1229)
Q Consensus 412 H~~~l~PklqsvLPq~ID~~W~~mI~~g~WkPvD~~AA~~mi~~~~k~~~~~~~~~~f~~~~~~~~~~~c~kd~~~s~~~ 491 (1229)
|+++++|++|+++||+||++|++||++|+||||||+||++|||||++++++ |.| |
T Consensus 81 H~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k~~~~------~~~-----------~-------- 135 (466)
T PF04780_consen 81 HPAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLKDVKS------FVY-----------K-------- 135 (466)
T ss_pred hhhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHhhcch------hhh-----------h--------
Confidence 999999999999999999999999999999999999999999999999994 444 5
Q ss_pred ccccCCCCCCCCcCCCcccccccccccccCCCCccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhccccchhhhhHH
Q 000910 492 KENLGHSYNSSSVEGNDCEKVVSIQCRECDGNQVSAVYPLIDSWPVADDTERVKLLERIHALFELLLRHKCLSASHLSKV 571 (1229)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~k~~~~~~~e~~~~~~~~~~~~~~~WPLadD~ER~klLkkI~~lf~~l~k~k~Ls~s~~d~v 571 (1229)
|||+ ++ ||||+|+||+||||+||.||++||+||||||||||||
T Consensus 136 --------~gw~------------------~~-----------WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~~~~v 178 (466)
T PF04780_consen 136 --------NGWS------------------KD-----------WPLADDEERAKLLKKIHSLLKSLCKHKILSCSHRDWV 178 (466)
T ss_pred --------cCCC------------------CC-----------CCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 4554 45 9999999999999999999999999999999999999
Q ss_pred HHhhHHHHhhcccccccc-cccCCCCCceeeccCchhhHHHHHHHHHHHhhccCcccCCccccccccccCCCCccceeee
Q 000910 572 IQYTMDELQSLASGSLLL-NHGVGQTPMCICFLGVHQLRKIVKFLQELSHACSLGRYSERINSIDDANSVSPSLEIKETI 650 (1229)
Q Consensus 572 i~ft~~eLq~l~s~s~Ll-~~~l~eTP~cICFLe~~qL~~IL~FLq~l~~~cgl~R~s~~~~~~~~~~s~~~~~~vkEkI 650 (1229)
|||||+|||+|++++++| ||||+|||||||||||+||+|||+|||+|+ | .|+++++++++++|+|+++++|||||
T Consensus 179 i~ft~~~L~~l~v~~~~L~~~~l~~tP~~ICFLe~~~L~~Il~fL~~l~--~--~~~~~~~~v~~~~~~~~~~~~vkekI 254 (466)
T PF04780_consen 179 IQFTVEELQKLEVSSQLLVNCSLDETPQCICFLECSQLNKILKFLQELK--C--RRDDGTSLVCRDVDSFWEGSRVKEKI 254 (466)
T ss_pred HHhhHHHHhccCcchhhhhhccCCCCCceeEecCcHHHHHHHHHHHHHh--h--ccccCcccccccccccccccccceee
Confidence 999999999999666655 999999999999999999999999999999 8 57788899999999999999999999
Q ss_pred eccCCcchhhhccccccccccCCCccccccccccccCCCCCcCCCCceeeeeccCCCCccccccccchhhhhhhhhhHHH
Q 000910 651 VLNGDASCLLLDERLLSTELISGDAFIDNVTSANIRHENGVAEDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEIL 730 (1229)
Q Consensus 651 ~ld~d~S~LLLDkrlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~gD~~lSWlf~~~si~eql~sw~~~re~~~~~~~~VL 730 (1229)
+||+||||||||+|||+|++++++++|+|.++.+++||++++|+||+||||||+||||++||.+|+++|+||++|||+||
T Consensus 255 ~ld~~~S~LLLDkrll~~~~~~~dd~gti~~~~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl 334 (466)
T PF04780_consen 255 DLDSDFSCLLLDKRLLKGELDPFDDEGTINVFDPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVL 334 (466)
T ss_pred ecCCccceeeechhhhccCCCccCcCCceeccCCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999666699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHhhhhhhchhcccccchhhHHHHHHHHHHHHhhhcCccccccchhHHH
Q 000910 731 QTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETVAEFGHRSYESVLRKRREELLESENDMFISSRFESDA 810 (1229)
Q Consensus 731 ~~le~ef~~L~~~cekK~~~L~Ye~aL~~vE~lCleE~~rR~~~~e~~~~~YeslLr~r~eel~~~~~d~~~s~~~el~a 810 (1229)
|+||+||+||+++|+|||+||+||+||++|||||+||++||++++||||++||||||+|||||+++++|+|+++|+||||
T Consensus 335 ~~v~~~~~~L~~~y~kK~~~l~ye~aL~~ve~lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d~~~~~k~~l~~ 414 (466)
T PF04780_consen 335 RAVEKEFRTLQSKYEKKCEHLSYEEALQAVENLCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDDNSLSTKFELDA 414 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhcccccccccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCccccccCcccccccCCCCCCCCcccccccccchhHHHHH
Q 000910 811 ILNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVA 866 (1229)
Q Consensus 811 I~~VLkea~~l~~~~F~~~e~~~~~t~~l~d~~~~e~~~w~~~d~~~~~D~~v~~s 866 (1229)
|+|||+||++ |+|+|.+..+| +++|||++|+++|+ ++++++|+.|++|+.+
T Consensus 415 v~~Vl~~a~~---~~f~~~~~~~~-~~~i~~~~s~~~dd-~~~~~~~~l~s~v~~~ 465 (466)
T PF04780_consen 415 VRDVLKEAST---PTFNFFGYEDC-TSLIRDLKSGESDD-RVKKSIHLLDSVVQFK 465 (466)
T ss_pred HHHHHhhccc---CCCCCcccHHH-HHHHhcccccccch-HHHHHHHHHHHHHhhc
Confidence 9999999999 66667666556 77799999998888 8888888888888754
No 2
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-66 Score=611.70 Aligned_cols=381 Identities=23% Similarity=0.307 Sum_probs=369.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhHHHHhhcc-cccccccccCCCCCceeeccCchhhHHHHH
Q 000910 535 WPVADDTERVKLLERIHALFELLLRHKCLSASHLSKVIQYTMDELQSLA-SGSLLLNHGVGQTPMCICFLGVHQLRKIVK 613 (1229)
Q Consensus 535 WPLadD~ER~klLkkI~~lf~~l~k~k~Ls~s~~d~vi~ft~~eLq~l~-s~s~Ll~~~l~eTP~cICFLe~~qL~~IL~ 613 (1229)
||++.|++|++||++||.+++.|+.+||++|++++|+|.|||+||.+|. |.+.+ .+++++|||+||||+++.|.+|++
T Consensus 2 ~~~~~~~~~~~llk~i~l~l~~~~~~k~~s~sir~~~m~~p~~~l~~~~~Seh~~-~~~~v~t~qs~~~le~~~l~~i~~ 80 (806)
T KOG1887|consen 2 WPLAEDEERSKLAKEIKLLLVSFCDRKILSCSIRDWLMGFPVKHLGQLEVSEHSL-DSRLVETPQSICFLENPELYQVLD 80 (806)
T ss_pred CchhhhhhHHHHHHHHHHHHhhhhhhhhccCcccchhhcCCHHHhccceeccccc-chhhhcccchhhhhccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 99999 999999999999999999999999
Q ss_pred HHHHHHhhccCcccCCccccccccccCCCCccceeeeeccCCcchhhhccccccccccCCCccccccccc-cccCCCCCc
Q 000910 614 FLQELSHACSLGRYSERINSIDDANSVSPSLEIKETIVLNGDASCLLLDERLLSTELISGDAFIDNVTSA-NIRHENGVA 692 (1229)
Q Consensus 614 FLq~l~~~cgl~R~s~~~~~~~~~~s~~~~~~vkEkI~ld~d~S~LLLDkrlL~~~~~~~~~~~~~~~~~-~~~~~~~~~ 692 (1229)
|+..++ | .|+++++++++++++++..+++|+||+||++||+|+||+|++.++...|+++|++ +++ |++||.++.
T Consensus 81 ~~~~~~--~--~~~~g~~l~~~~~~~~~~~~~~~~k~d~d~~~~~~~~~~rl~~~~~~~~~~~g~~-n~~~p~~~~~~~~ 155 (806)
T KOG1887|consen 81 FLKKIK--C--QRNDGTGLVCRAVYSFFSRTRVKSKIDFDAQFSVLLLDKRLLKSKGNRFDDEGTI-NVFDPEAHYAKTK 155 (806)
T ss_pred HHHhhc--c--ccccCCccccccccceeeeeecccccCCchhhhhhhhcchhhhccCccccCCCcc-cccCchHhhhhhh
Confidence 999999 9 8999999999999999999999999999999999999999999999999999999 888 999999999
Q ss_pred CCCCceeeeeccCCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHhhhhhhchh
Q 000910 693 EDADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRE 772 (1229)
Q Consensus 693 ~~gD~~lSWlf~~~si~eql~sw~~~re~~~~~~~~VL~~le~ef~~L~~~cekK~~~L~Ye~aL~~vE~lCleE~~rR~ 772 (1229)
++||.++|||.++.+.+..| ++++++|++.+||+++|++++||+++.+.|++|+..+.|.+|++.+|++|++||+||+
T Consensus 156 ~~~d~iiswl~~~v~~d~~f--p~~~~~~nl~~~~~~~rav~~tc~~~~t~~~~~~~~~~~~~~~~~~~~k~~~ed~r~~ 233 (806)
T KOG1887|consen 156 SQLDDIISWLEDYVLENKIF--PRPIREHNLDIWMAVLRAKQFTCRTLATKYAKKILVLKYDAALTDPENKCMREDERRK 233 (806)
T ss_pred hhcchhhhhhhhhhhccccC--CchhhhccchhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhcchhhhhcchhhhhh
Confidence 99999999999988888886 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHhhhcCccccccchhHHHHHHHHHHHhhhccCCCCccccccCcccccccCCCCCCCCccc
Q 000910 773 TVAEFGHRSYESVLRKRREELLESENDMFISSRFESDAILNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRN 852 (1229)
Q Consensus 773 ~~~e~~~~~YeslLr~r~eel~~~~~d~~~s~~~el~aI~~VLkea~~l~~~~F~~~e~~~~~t~~l~d~~~~e~~~w~~ 852 (1229)
|.+++||..||++||+.|+|.+-.+. +.+++++++|+|||.+++. |+|.|.+..+|++. +
T Consensus 234 n~~~dq~~~y~~~~~~~~qe~~~~~~---~~~~~~~~~v~d~~~~~s~---p~~~~~~~~~c~N~--------------~ 293 (806)
T KOG1887|consen 234 NKPEDQWLEYEQLLLDSCQEQQIEQS---LQTKLFLCAVRDVLEGASS---PTFAFADASDCLNL--------------I 293 (806)
T ss_pred cchHHHHHHHHHhchHHHHHHHHHhh---hhhhhHHHHHHhhhccccC---CCCCccchHhhcch--------------h
Confidence 99999999999999999999985444 8899999999999999999 99999999999999 8
Q ss_pred ccccccchhHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhHHHHhhhcCccccccchhhhhHhhHHHHHHHHHHHhhhhhh
Q 000910 853 KDCLHQVDTCIEVAIQRQKEQLSVELSKIDARIMRNVTSMQQLELKLEPVSAYDYQSILLPLVQSYLRAHLEDLAEKDAT 932 (1229)
Q Consensus 853 ~d~~~~~D~~v~~sI~~lK~~v~~k~~~iDakImr~~~~~~qL~~kL~~lS~~DYR~iiLplvKsflra~Le~l~~kdA~ 932 (1229)
++|++.+|++|..+|..||.+++.+|+++|++|+.+.++++.|.+.|.++|+||||+|+++++|.|+ ++++.+|..+
T Consensus 294 ~~~~~~~~~~~~~~i~~l~s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~~~~---~~e~k~~~~k 370 (806)
T KOG1887|consen 294 REHKQEKDDAVLPSIDLLKSVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKKPFL---LDEIKNMEKK 370 (806)
T ss_pred hhccccccceecCCcchhhhhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcchhh---hhhhhhcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHHHHHh
Q 000910 933 EKSDAAREAFLAEL 946 (1229)
Q Consensus 933 ~KsdAa~ea~Lael 946 (1229)
+|.+++..-++-|+
T Consensus 371 ~k~~~~~~~l~~e~ 384 (806)
T KOG1887|consen 371 AKKDLAEADLLSEL 384 (806)
T ss_pred hhhhhhhhhhhhHH
Confidence 99996666665554
No 3
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=99.95 E-value=8.2e-29 Score=238.58 Aligned_cols=107 Identities=39% Similarity=0.585 Sum_probs=103.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
++|++++++|||+|||++|||+|++||++...|++|++||+||+++|..++||++|++||++||+||++|..|+|+|
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~--- 77 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS--- 77 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH---
Confidence 47999999999999999999999999998777899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhc---CccHHHHHHHHHHHhccCCC
Q 000910 142 AHFYANLLYEAAND---GKEYEEVVQECERALAIENP 175 (1229)
Q Consensus 142 A~f~A~lL~ela~~---~~~YeeAv~Ec~RALaI~sP 175 (1229)
|++||+||++ ..+|++|+++|+|||+|++|
T Consensus 78 ----A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 78 ----AHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred ----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 9999999999 55999999999999999999
No 4
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.5e-11 Score=143.51 Aligned_cols=359 Identities=7% Similarity=-0.174 Sum_probs=288.1
Q ss_pred chhHHHHHHHHHHHhhhccCCCCccccccCcccccccCCCCCCCCcccccccccchhHHHHHHHHHHHHHHHhhhhhhhH
Q 000910 805 RFESDAILNVLKEAEALNVNQFGYEDTYSGMTSQLCDLESGEDDDWRNKDCLHQVDTCIEVAIQRQKEQLSVELSKIDAR 884 (1229)
Q Consensus 805 ~~el~aI~~VLkea~~l~~~~F~~~e~~~~~t~~l~d~~~~e~~~w~~~d~~~~~D~~v~~sI~~lK~~v~~k~~~iDak 884 (1229)
.+...+.+.|..-+.+ |.+..+++|-.++..|..+.+. .|.+.+..|.. ....++.-|+..+.....+++.-
T Consensus 8 ~~~~~llk~i~l~l~~-----~~~~k~~s~sir~~~m~~p~~~-l~~~~~Seh~~--~~~~v~t~qs~~~le~~~l~~i~ 79 (806)
T KOG1887|consen 8 EERSKLAKEIKLLLVS-----FCDRKILSCSIRDWLMGFPVKH-LGQLEVSEHSL--DSRLVETPQSICFLENPELYQVL 79 (806)
T ss_pred hhHHHHHHHHHHHHhh-----hhhhhhccCcccchhhcCCHHH-hccceeccccc--chhhhcccchhhhhccHHHHHHH
Confidence 3444455555555555 4555569999999999999999 99999999988 66779999999999999999999
Q ss_pred HHhhhhhHHHHhhhcCccccccchhhhhHhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccCCCCCccccc
Q 000910 885 IMRNVTSMQQLELKLEPVSAYDYQSILLPLVQSYLRAHLEDLAEKDATEKSDAAREAFLAELALDSKKVARGGSDISKHT 964 (1229)
Q Consensus 885 Imr~~~~~~qL~~kL~~lS~~DYR~iiLplvKsflra~Le~l~~kdA~~KsdAa~ea~Laela~d~~k~~~~~~~~~~~~ 964 (1229)
-|++.++++++..+..+.++.||--...|..++ +|+.++..++..+..-..+++...-. .|..+..++
T Consensus 80 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~k-----------~d~d~~~~~~~~~~rl~~~~~~~~~~-~g~~n~~~p 147 (806)
T KOG1887|consen 80 DFLKKIKCQRNDGTGLVCRAVYSFFSRTRVKSK-----------IDFDAQFSVLLLDKRLLKSKGNRFDD-EGTINVFDP 147 (806)
T ss_pred HHHHhhccccccCCccccccccceeeeeecccc-----------cCCchhhhhhhhcchhhhccCccccC-CCcccccCc
Confidence 999999999999999999999999888877654 78899999999998889999999999 999999999
Q ss_pred cchhhhhhhhhhhhhccCCCCCCCCCccccccccccccCCcccCCCCCCCCCcccccCcchhhhhHHHHHHhhhhhHHHH
Q 000910 965 NDKTKEKRKHKEYRKTKDSKPVGGNERHIVHDKTADLVSFPVESDGDNPDSETVVSANGDDLKLQEEEFRRKIELEAEER 1044 (1229)
Q Consensus 965 ~~k~kdkkk~k~~rk~kd~k~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~qeee~r~~~~le~eer 1044 (1229)
..+.+++|+.+|.+.+.-.+ ..+.|.-+ +..+. +.+.+ ..++-+-. |..++.......++++++--..|++++
T Consensus 148 ~~~~~~~~~~~d~iiswl~~-~v~~d~~f--p~~~~-~~nl~--~~~~~~ra-v~~tc~~~~t~~~~~~~~~~~~~~~~~ 220 (806)
T KOG1887|consen 148 EAHYAKTKSQLDDIISWLED-YVLENKIF--PRPIR-EHNLD--IWMAVLRA-KQFTCRTLATKYAKKILVLKYDAALTD 220 (806)
T ss_pred hHhhhhhhhhcchhhhhhhh-hhhccccC--Cchhh-hccch--hHHHHHHH-HHHHHHHHhhHHHHHHHhhchhhhhcc
Confidence 99999999999999987777 66666655 33332 22221 22222222 566777777888889999999999999
Q ss_pred hHHHHHHHHHhhHHHHhhhhhHHHhhhccccccCccccccccCccCCCCCCcccccccccCccccccccCCCCCCCCCCC
Q 000910 1045 KLEETLAYQRRIENEAKLKHLAEQSKKSAQIFGENVAEGVCDTYLGHGSNDLDMHKSMRLSSPVQLVSKDEFPHNFEGTP 1124 (1229)
Q Consensus 1045 kleetleyqrrie~eak~khlaeq~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1124 (1229)
..-.++++++|++|+++ +|-+++.+....+..+.++..+.-+ .+... ..|-+ .+....+.+..+..+.-
T Consensus 221 ~~~k~~~ed~r~~n~~~-----dq~~~y~~~~~~~~qe~~~~~~~~~---~~~~~-~v~d~--~~~~s~p~~~~~~~~~c 289 (806)
T KOG1887|consen 221 PENKCMREDERRKNKPE-----DQWLEYEQLLLDSCQEQQIEQSLQT---KLFLC-AVRDV--LEGASSPTFAFADASDC 289 (806)
T ss_pred hhhhhcchhhhhhcchH-----HHHHHHHHhchHHHHHHHHHhhhhh---hhHHH-HHHhh--hccccCCCCCccchHhh
Confidence 99999999999999988 8989999888877777777666111 11111 11222 33334444444556677
Q ss_pred cccCCCcccCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccccccccccccc
Q 000910 1125 VNTANGAAVPIRSSPTSSFQNINTAHHLSIKQGLPNGETPEDGFLPTDRRTGRRGRRHRSSNRSQDWKNQALSSEKENIG 1204 (1229)
Q Consensus 1125 ~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~r~g~~~~r~~~s~k~~d~k~~~~~~~~~n~~ 1204 (1229)
+|+ ++..+.+....++..-.. +++.+.+.+|++....-++..|..+.++...|.+.....+.+.++.-.+..+.++
T Consensus 290 ~N~-~~~~~~~~~~~~~~~i~~---l~s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~~~~~~e~k 365 (806)
T KOG1887|consen 290 LNL-IREHKQEKDDAVLPSIDL---LKSVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKKPFLLDEIK 365 (806)
T ss_pred cch-hhhccccccceecCCcch---hhhhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcchhhhhhhh
Confidence 888 899999999999988777 8899999999999999999999999999999999999999999988887777776
Q ss_pred c
Q 000910 1205 V 1205 (1229)
Q Consensus 1205 ~ 1205 (1229)
+
T Consensus 366 ~ 366 (806)
T KOG1887|consen 366 N 366 (806)
T ss_pred h
Confidence 6
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.40 E-value=0.0023 Score=64.24 Aligned_cols=98 Identities=14% Similarity=0.019 Sum_probs=86.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHH
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA 142 (1229)
.+..++..|++.+|+.....++...|.+ +-+|+.-|.++..+.. ...|+.+|.+|..+.|+..+.-
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~-----------~~~A~~~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKE-----------YTTAINFYGHALMLDASHPEPV 95 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHhcCCCCcHHH
Confidence 5788899999999999999999999999 8999999999997753 2579999999999999999999
Q ss_pred HHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcc
Q 000910 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1229)
Q Consensus 143 ~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA 179 (1229)
..+|.+|+.++ .|++|+..+.+||.+. |.+|-
T Consensus 96 ~~lg~~l~~~g----~~~eAi~~~~~Al~~~-p~~~~ 127 (144)
T PRK15359 96 YQTGVCLKMMG----EPGLAREAFQTAIKMS-YADAS 127 (144)
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHhC-CCChH
Confidence 99999999984 6899999999999974 55443
No 6
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.14 E-value=0.0031 Score=72.31 Aligned_cols=99 Identities=19% Similarity=0.240 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
..|..++..|++.+|+....+.+...|+. +.++...|.++..+. + +..|+.++.+|..+.|+....
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g----~-------~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLG----N-------FTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHhCcCCHHH
Confidence 34778889999999999999999999999 788888888887663 2 358999999999999999999
Q ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcc
Q 000910 142 AHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1229)
Q Consensus 142 A~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA 179 (1229)
...+|.+++.+ +.|++|..-+++||.+. |.+|.
T Consensus 73 ~~~lg~~~~~l----g~~~eA~~~~~~al~l~-P~~~~ 105 (356)
T PLN03088 73 YLRKGTACMKL----EEYQTAKAALEKGASLA-PGDSR 105 (356)
T ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHHhC-CCCHH
Confidence 99999999988 47999999999999973 54443
No 7
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.84 E-value=0.028 Score=53.88 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000910 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1229)
Q Consensus 59 kEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPnc 138 (1229)
.-...|..++..|++.+|+..++.++..+|.. +.++...|.+++.... ...|+.++.++..+.|+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~-----------~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKE-----------YEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcCCCC
Confidence 34567788889999999999999999999998 7777888888876632 147888999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 139 VEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 139 VeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
.+....+|..++.. +.|++|+...++++.+.
T Consensus 85 ~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 85 PRPYFHAAECLLAL----GEPESALKALDLAIEIC 115 (135)
T ss_pred hHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhc
Confidence 99999999988887 47999999999999973
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.44 E-value=0.023 Score=63.33 Aligned_cols=100 Identities=18% Similarity=0.079 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhH
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVe 140 (1229)
..++.-+.+.|++.+|+......+..+|+. +.+++..|.++..... . ..|+++|.+|..+.|+...
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~----~-------~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGN----F-------DAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCC----H-------HHHHHHHHHHHHhCCCCHH
Confidence 355667788899999999999999999999 8999999998886642 2 3789999999999999999
Q ss_pred HHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcc
Q 000910 141 FAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1229)
Q Consensus 141 iA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA 179 (1229)
....+|.+++.. +.|++|+..+.+++.+ .|.||.
T Consensus 134 a~~~lg~~l~~~----g~~~eA~~~~~~al~~-~P~~~~ 167 (296)
T PRK11189 134 AYLNRGIALYYG----GRYELAQDDLLAFYQD-DPNDPY 167 (296)
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHH
Confidence 888899988887 4799999999999997 588873
No 9
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.29 E-value=0.068 Score=59.70 Aligned_cols=101 Identities=9% Similarity=0.099 Sum_probs=77.8
Q ss_pred hHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhC
Q 000910 57 IKLECERALTA-LRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1229)
Q Consensus 57 IRkEae~AL~~-~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~Ls 135 (1229)
-...-+.|+.+ +..|++.+|+...+.++..||+|.+++-+|+.-|.+++... +. ..|+..|.+.+...
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g----~~-------~~A~~~f~~vv~~y 210 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG----KK-------DDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHHC
Confidence 35567788887 56799999999999999999999888899999999998653 22 48999999999999
Q ss_pred CChhHHHHHH---HHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 136 PHSVEFAHFY---ANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 136 PncVeiA~f~---A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
|++....-++ |..++.+ +.|++|..-.++.+.-
T Consensus 211 P~s~~~~dAl~klg~~~~~~----g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDK----GDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCCcchhHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 9986554444 4444444 4688887777666553
No 10
>PRK12370 invasion protein regulator; Provisional
Probab=96.18 E-value=0.038 Score=66.74 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=64.2
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Q 000910 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1229)
Q Consensus 69 rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~l 148 (1229)
..|++.+|+..+++.....|++ +.+|...|.++.... +. ..|+.+|.+|..+.||+...-..+|.+
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~---~~a~~~lg~~~~~~g----~~-------~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNN---PQALGLLGLINTIHS----EY-------IVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc----CH-------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456777877777777777777 677777777665432 22 357777777778888877777777777
Q ss_pred HHHHhhcCccHHHHHHHHHHHhccCCCCCccc
Q 000910 149 LYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1229)
Q Consensus 149 L~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~ 180 (1229)
++.+ +.|++|+..+++|+.+ +|.+|..
T Consensus 382 l~~~----G~~~eAi~~~~~Al~l-~P~~~~~ 408 (553)
T PRK12370 382 LFMA----GQLEEALQTINECLKL-DPTRAAA 408 (553)
T ss_pred HHHC----CCHHHHHHHHHHHHhc-CCCChhh
Confidence 7766 3577777777777776 3555543
No 11
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.10 E-value=0.13 Score=42.45 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
..|..++..|++.+|+...+......|.+ +.++...|.++.... + ...|++++.++..+.|.....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLG----K-------YEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHH----H-------HHHHHHHHHHHHhCCCcchhH
Confidence 35666778899999999999999888888 677888888887652 1 247889999999999999988
Q ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 142 AHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 142 A~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
....|..++..+ .|++|..-+.+++.+
T Consensus 71 ~~~~~~~~~~~~----~~~~a~~~~~~~~~~ 97 (100)
T cd00189 71 YYNLGLAYYKLG----KYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHH----hHHHHHHHHHHHHcc
Confidence 788888888774 588888888888765
No 12
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.05 E-value=0.0043 Score=43.56 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=20.8
Q ss_pred eecCcCccccCChhHHHHHHHhhh
Q 000910 389 WVCCRCNEKFADSESHMHHVVQQH 412 (1229)
Q Consensus 389 WiCp~CskKF~Dt~Sl~~Hm~qkH 412 (1229)
|.|++|++.|.+...++.||...|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 799999999999999999999876
No 13
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.02 E-value=0.096 Score=48.18 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChh-
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV- 139 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncV- 139 (1229)
...|..+.+.|++.+|+...+.++..+|++...+-+++..|.++++.. +. ..|+..|.++..+.|+..
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~-------~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG----KY-------ADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc----cH-------HHHHHHHHHHHHHCCCCCc
Confidence 456778899999999999999999999987444567777787777553 22 479999999999999963
Q ss_pred --HHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 140 --EFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 140 --eiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
.+-...|.+++.+ +.|++|..-..+++..
T Consensus 75 ~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQEL----GDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHh----CChHHHHHHHHHHHHH
Confidence 4555566666665 4689999888888886
No 14
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.63 E-value=0.12 Score=54.90 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=77.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHH
Q 000910 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1229)
Q Consensus 65 L~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f 144 (1229)
.-+...|++++|+...+....-.|++ +-++..-|++.+...... ....|+..+.+|..+.|+-++.-..
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P~~---~~~~~~lA~aL~~~~g~~--------~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRGEN---AELYAALATVLYYQAGQH--------MTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhCCCChhHHHH
Confidence 44668899999999999999888988 677777777654332111 1247899999999999999999999
Q ss_pred HHHHHHHHhhcCccHHHHHHHHHHHhccCCCCC
Q 000910 145 YANLLYEAANDGKEYEEVVQECERALAIENPID 177 (1229)
Q Consensus 145 ~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~D 177 (1229)
+|..+++. +.|++|+.-.+++|.+..|.|
T Consensus 150 LA~~~~~~----g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 150 LASDAFMQ----ADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHc----CCHHHHHHHHHHHHhhCCCCc
Confidence 99999988 479999999999999876644
No 15
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.60 E-value=0.0078 Score=42.99 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=21.6
Q ss_pred eecCcCccccCChhHHHHHHHhhh
Q 000910 389 WVCCRCNEKFADSESHMHHVVQQH 412 (1229)
Q Consensus 389 WiCp~CskKF~Dt~Sl~~Hm~qkH 412 (1229)
|.|+.|++.|.+...|..||.. |
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH-H
T ss_pred CCCCCCCCccCCHHHHHHHHhH-C
Confidence 6899999999999999999987 6
No 16
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.57 E-value=0.035 Score=47.63 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPnc 138 (1229)
..|..++..|++.+|++..+.+...+|++ +-+++..|.+++.... ...|+..|.+++.+.|+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---~~a~~~lg~~~~~~g~-----------~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN---PEAWYLLGRILYQQGR-----------YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCcCC
Confidence 35788999999999999999999999999 8999999999997643 247889999999999985
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=95.39 E-value=0.066 Score=64.73 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=80.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHH
Q 000910 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1229)
Q Consensus 66 ~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~ 145 (1229)
-+...|++.+|++..+......|++ +.+|+.-|.++..+. +. ..|+..|.+|.++.|+........
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~G----~~-------~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPIS---ADIKYYYGWNLFMAG----QL-------EEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHhcCCCChhhHHHH
Confidence 4467899999999999999999999 888888898887653 23 479999999999999988766666
Q ss_pred HHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccc
Q 000910 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1229)
Q Consensus 146 A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~ 182 (1229)
+.++|.+ +.|++|+..+++++....|.+|..+.
T Consensus 413 ~~~~~~~----g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 413 LWITYYH----TGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred HHHHHhc----cCHHHHHHHHHHHHHhccccCHHHHH
Confidence 6666665 35899999999999887777777543
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=94.94 E-value=0.26 Score=49.04 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 58 RkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
..-...|..++..|++.+|+..+++.+..+|++ +.++...|.++.... +. ..|+..|.++..+.|+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~----~~-------~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDD---YLAYLALALYYQQLG----EL-------EKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHhhCCC
Confidence 444556788899999999999999999999998 778888888877553 33 3789999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 138 cVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
.......+|..++.. +.|++|..-+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~----g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQ----GKYEQAMQQFEQAIED 128 (234)
T ss_pred CHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhc
Confidence 888888888888776 4799999999999875
No 19
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.69 E-value=0.34 Score=58.28 Aligned_cols=101 Identities=27% Similarity=0.362 Sum_probs=86.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHH
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA 142 (1229)
.|+..++.|..++|+.....|+..+|++ +...-+.|.|..++-+. ..|.+.+.+|..|.|++--.=
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N---~~~~~~~~~i~~~~nk~-----------~~A~e~~~kal~l~P~~~~l~ 377 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDN---PYYLELAGDILLEANKA-----------KEAIERLKKALALDPNSPLLQ 377 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHhcCCCccHHH
Confidence 5789999999999999999999999999 78888999998877532 479999999999999999888
Q ss_pred HHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccc
Q 000910 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKES 182 (1229)
Q Consensus 143 ~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~ 182 (1229)
.-||.+|+..+ .+++|+++..|++. ..|.||--=+
T Consensus 378 ~~~a~all~~g----~~~eai~~L~~~~~-~~p~dp~~w~ 412 (484)
T COG4783 378 LNLAQALLKGG----KPQEAIRILNRYLF-NDPEDPNGWD 412 (484)
T ss_pred HHHHHHHHhcC----ChHHHHHHHHHHhh-cCCCCchHHH
Confidence 99999999995 46899999999887 3466665443
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.66 E-value=0.32 Score=59.32 Aligned_cols=102 Identities=10% Similarity=0.062 Sum_probs=59.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh------------hcCChhHHHH-----------H
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDDLNSKQR-----------H 120 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~------------~~dd~~~K~~-----------h 120 (1229)
+.-.+..|++.+|+..++..+..+|+. +..+...|.++..+.. ..+....... -
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRV---TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345567899999999999999888887 5566666666654310 1111000011 1
Q ss_pred HHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 121 L~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
+..|+.+|.+|..+.|+.+..-..+|.+++.+ +.|++|+.-+.+++.+
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE----GSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 22456666666666666665555555555555 2456666666666654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.62 E-value=0.18 Score=62.58 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=78.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHH
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA 142 (1229)
-++.+++.|++.+|+.++....+.+|+. +-+++.-|..... ..+.+ .|+..|.++..+.|+..+.-
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~---~~~l~~l~~~~l~----~g~~~-------~A~~~l~~~l~~~P~~~~a~ 113 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNG---RDLLRRWVISPLA----SSQPD-------AVLQVVNKLLAVNVCQPEDV 113 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCc---hhHHHHHhhhHhh----cCCHH-------HHHHHHHHHHHhCCCChHHH
Confidence 3478889999999999999999999999 7888888854442 23333 78888999999999988877
Q ss_pred HHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 143 ~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
..+|.+++.. +.|++|...+.+|+.+ +|.+|...
T Consensus 114 ~~la~~l~~~----g~~~~Ai~~l~~Al~l-~P~~~~a~ 147 (656)
T PRK15174 114 LLVASVLLKS----KQYATVADLAEQAWLA-FSGNSQIF 147 (656)
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHh-CCCcHHHH
Confidence 7778777777 3688898889999887 46665544
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.60 E-value=0.59 Score=57.01 Aligned_cols=113 Identities=14% Similarity=0.222 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHh------------hhcCChhHHHH--------
Q 000910 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA------------SIIDDLNSKQR-------- 119 (1229)
Q Consensus 60 Eae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A------------~~~dd~~~K~~-------- 119 (1229)
-+..|.-++..|++.+|+...+..+..+|+. +.+++..|.+++... -.++.......
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 3566777888899999999999988888888 677777777776542 12222111111
Q ss_pred ---HHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcc
Q 000910 120 ---HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1229)
Q Consensus 120 ---hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA 179 (1229)
.+..|+..|.+|..+.|+..+.-..+|.++...+ .|++|+..+.+|+.+....++.
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g----~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN----KFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc----CHHHHHHHHHHHHhcCCccccc
Confidence 1467899999999999999999999999998874 6899999999999985434443
No 23
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.59 E-value=0.18 Score=43.80 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=60.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHH
Q 000910 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1229)
Q Consensus 66 ~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~ 145 (1229)
-+++.++..+|++.++.++.-+|.+ +.++...|.+++.+.. ...|+.++.++..+.|+..+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~-----------~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGR-----------YEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhcc-----------HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4678899999999999999999999 8999999999997753 2589999999999999999888777
Q ss_pred HHH
Q 000910 146 ANL 148 (1229)
Q Consensus 146 A~l 148 (1229)
|++
T Consensus 70 a~l 72 (73)
T PF13371_consen 70 AML 72 (73)
T ss_pred Hhc
Confidence 764
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.32 E-value=0.22 Score=61.70 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHH
Q 000910 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1229)
Q Consensus 65 L~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f 144 (1229)
..+...|++.+|+....+....+|++ +.+++.-|.++.....- ++ ++ ..|+..|.+|..+.|+....-..
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~~-~e--A~----~~A~~~~~~Al~l~P~~~~a~~~ 289 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGRS-RE--AK----LQAAEHWRHALQFNSDNVRIVTL 289 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCc-hh--hH----HHHHHHHHHHHhhCCCCHHHHHH
Confidence 34566788888888888888888888 77777777777765421 11 11 35899999999999999999999
Q ss_pred HHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccc
Q 000910 145 YANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1229)
Q Consensus 145 ~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~ 180 (1229)
+|.+|+..+ .|++|+..+++|+.+ .|.+|..
T Consensus 290 lg~~l~~~g----~~~eA~~~l~~al~l-~P~~~~a 320 (656)
T PRK15174 290 YADALIRTG----QNEKAIPLLQQSLAT-HPDLPYV 320 (656)
T ss_pred HHHHHHHCC----CHHHHHHHHHHHHHh-CCCCHHH
Confidence 999999884 689999999999987 4665543
No 25
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.31 E-value=0.8 Score=48.28 Aligned_cols=107 Identities=15% Similarity=0.176 Sum_probs=68.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHH
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~ 143 (1229)
|.-++..|++.+|+...+++...+|++..++.+++..|.++++... +..........|+..|.++....|++...-.
T Consensus 77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID---RVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc---cccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 4455666777777777777777777764444566667776665411 1111123456799999999999999864422
Q ss_pred H-----------------HHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCc
Q 000910 144 F-----------------YANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 144 f-----------------~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
. .|..++.. +.|++|+.-+.+++.. .|.+|
T Consensus 154 a~~~~~~~~~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~-~p~~~ 200 (235)
T TIGR03302 154 AKKRMDYLRNRLAGKELYVARFYLKR----GAYVAAINRFETVVEN-YPDTP 200 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHH-CCCCc
Confidence 2 23333333 4799999999999886 34444
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.87 E-value=0.51 Score=60.11 Aligned_cols=113 Identities=14% Similarity=0.204 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhh----HHHHHHhhhhHHHH-----hh-----------hcCChh
Q 000910 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYV----ALIHRVQGTVCVKV-----AS-----------IIDDLN 115 (1229)
Q Consensus 56 aIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~----alvH~lqG~v~~~~-----A~-----------~~dd~~ 115 (1229)
+++.=-..|--++.+||.++|.++.+|.|..-|.-..+ +.++..+|++--.+ |+ ...|..
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35666667888999999999999999999777775322 67777777653322 22 112233
Q ss_pred HHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 116 SKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 116 ~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
.++-++..|.-||++|..+-|.-+++=.=++.++-.+| .+..|+.=..+.+..
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G----~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG----DLKRAMETFLQLLQL 270 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC----hHHHHHHHHHHHHhh
Confidence 45668899999999999999999999999999999885 567777555555554
No 27
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.81 E-value=0.26 Score=42.57 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=55.6
Q ss_pred HHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 94 alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
|.+++..|.+++..-. ...|+.+|++|+.+.|+...+-..+|.+++.++ +.|++|+..+.+||.+
T Consensus 3 a~~~~~~g~~~~~~~~-----------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~---~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGD-----------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG---KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTH-----------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHc
Confidence 6788888988886542 248999999999999999999999999998884 2599999999999986
No 28
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.57 E-value=0.35 Score=60.90 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhC
Q 000910 57 IKLECERALTALRRGN-HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1229)
Q Consensus 57 IRkEae~AL~~~rrGn-H~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~Ls 135 (1229)
+-.-++..+....+-. ..+||.++-+++.++|.. +-+|++-|.+..++.+ +..|+..+..+..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~La~i~~~~g~-----------~~ea~~~l~~~~~~~ 116 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRYPHT---ELFQVLVARALEAAHR-----------SDEGLAVWRGIHQRF 116 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhcccc---HHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhhC
Confidence 3444555555544433 567899999999999998 8889998888887653 235667777777788
Q ss_pred CChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 136 PHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 136 PncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
|+.+...+-+|+.|+.. +.|++|+.+|+|+|.+. |..+..+
T Consensus 117 Pd~~~a~~~~a~~L~~~----~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQ----QGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred CCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 88888888888888777 46788888888887763 4444333
No 29
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.30 E-value=0.77 Score=47.03 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhH
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVe 140 (1229)
-..+..+...|++.+|+...++.+..+|+....+.+++.-|.++..+.. . ..|+.+|.+|..+.|+...
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~----~-------~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE----H-------DKALEYYHQALELNPKQPS 107 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHhCcccHH
Confidence 4566778889999999999999998776643235677777888876532 2 4688899999999999988
Q ss_pred HHHHHHHHHHHHhhc---CccHHHHHHHHHHHhc
Q 000910 141 FAHFYANLLYEAAND---GKEYEEVVQECERALA 171 (1229)
Q Consensus 141 iA~f~A~lL~ela~~---~~~YeeAv~Ec~RALa 171 (1229)
....++.+++.+++. .+.|++|+....+|+.
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~ 141 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAE 141 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHH
Confidence 888888888887642 2245555554444443
No 30
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.20 E-value=1.7 Score=48.33 Aligned_cols=111 Identities=22% Similarity=0.149 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHH---HHHHhhhhH---HHHhhh-----cCChhH---HHH-----
Q 000910 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVAL---IHRVQGTVC---VKVASI-----IDDLNS---KQR----- 119 (1229)
Q Consensus 59 kEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~al---vH~lqG~v~---~~~A~~-----~dd~~~---K~~----- 119 (1229)
...-+|+.++..|++.+|++.++.+...+|.+..+.. .+...|... ..+... -.++.. ...
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 3445788899999999999999999999999832211 222223110 001000 112221 111
Q ss_pred ----HHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 120 ----HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 120 ----hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
.+..|+..+.++..+.|+.....+.+|+++++.+ .|++|+.-+.+++.+.
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g----~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG----RFKEGIAFMESWRDTW 178 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC----CHHHHHHHHHhhhhcc
Confidence 2567999999999999999999999999999984 6899999999999874
No 31
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=93.16 E-value=1.6 Score=43.71 Aligned_cols=92 Identities=25% Similarity=0.344 Sum_probs=68.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChh--
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV-- 139 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncV-- 139 (1229)
+.++..+..|+..++-+.++.++..||++.+..++....|.+++... +. ..|+..|..+..-.|+-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g----~~-------~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG----DY-------DEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHhhCCCHHHH
Confidence 34466667899999999999999999999777888777777777442 22 368888888888776542
Q ss_pred HHHHH-HHHHHHHHhhcCccHHHHHHHHHH
Q 000910 140 EFAHF-YANLLYEAANDGKEYEEVVQECER 168 (1229)
Q Consensus 140 eiA~f-~A~lL~ela~~~~~YeeAv~Ec~R 168 (1229)
.+|.+ +|.+++.. +.|++|+.....
T Consensus 85 ~~a~l~LA~~~~~~----~~~d~Al~~L~~ 110 (145)
T PF09976_consen 85 PLARLRLARILLQQ----GQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHh
Confidence 44554 67777766 479999877743
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.10 E-value=0.6 Score=49.78 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000910 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1229)
Q Consensus 70 rGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL 149 (1229)
.++..+++..+......+|++ +-.+..-|.++...- +. ..|+++|.+|..+.|+..++...+|.+|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~---~~~w~~Lg~~~~~~g----~~-------~~A~~a~~~Al~l~P~~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN---SEQWALLGEYYLWRN----DY-------DNALLAYRQALQLRGENAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456788888899999899999 677777788877543 33 4899999999999999999999999988
Q ss_pred HHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 150 YEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 150 ~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
+....+ ..|++|..-..+||.+. |.+|...
T Consensus 118 ~~~~g~-~~~~~A~~~l~~al~~d-P~~~~al 147 (198)
T PRK10370 118 YYQAGQ-HMTPQTREMIDKALALD-ANEVTAL 147 (198)
T ss_pred HHhcCC-CCcHHHHHHHHHHHHhC-CCChhHH
Confidence 655321 13799999999999973 5555443
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=93.07 E-value=1.2 Score=58.23 Aligned_cols=48 Identities=8% Similarity=-0.015 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 122 ~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
..|+++|.+|..+.|+..++-..+|.+++.++ .|++|+..+++|+.+.
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG----d~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLD----DMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhcC
Confidence 46788889999999999888888888888884 6888988899998874
No 34
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.04 E-value=0.8 Score=51.25 Aligned_cols=107 Identities=27% Similarity=0.295 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCC
Q 000910 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1229)
Q Consensus 57 IRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsP 136 (1229)
-..-+.-|+.+++.||...|..-+++....-|++ .++|.+-.+++..+. +...|-+.|++|+.|.|
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~---~~a~~~~A~~Yq~~G-----------e~~~A~e~YrkAlsl~p 100 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY---YLAHLVRAHYYQKLG-----------ENDLADESYRKALSLAP 100 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHhcCC
Confidence 3444677899999999999999999999777999 999999999988664 23478999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccC---CCCCcccc
Q 000910 137 HSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE---NPIDPAKE 181 (1229)
Q Consensus 137 ncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~---sP~DPA~~ 181 (1229)
+.=++--=|.--|..- +.|++|++-..+|+.-| .|.|+-++
T Consensus 101 ~~GdVLNNYG~FLC~q----g~~~eA~q~F~~Al~~P~Y~~~s~t~eN 144 (250)
T COG3063 101 NNGDVLNNYGAFLCAQ----GRPEEAMQQFERALADPAYGEPSDTLEN 144 (250)
T ss_pred CccchhhhhhHHHHhC----CChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence 9987766666555544 37999999999999863 34555554
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.97 E-value=0.55 Score=59.17 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=77.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHH
Q 000910 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1229)
Q Consensus 67 ~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A 146 (1229)
..++|++++|++..+-++.--|.. .-+++.-+++..+ ..++..|+..+.++....|++.+.-..+|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~---~~a~~~~a~~L~~-----------~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDS---SEAFILMLRGVKR-----------QQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHH-----------hccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 456789999999999999888887 5555555555554 34677999999999999999999999999
Q ss_pred HHHHHHhhcCccHHHHHHHHHHHhccCCCCCccc
Q 000910 147 NLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1229)
Q Consensus 147 ~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~ 180 (1229)
++|..++ .|++|..-..|+|+ .+|.+|..
T Consensus 162 ~~l~~~g----~~~~A~~~y~~~~~-~~p~~~~~ 190 (694)
T PRK15179 162 KSWDEIG----QSEQADACFERLSR-QHPEFENG 190 (694)
T ss_pred HHHHHhc----chHHHHHHHHHHHh-cCCCcHHH
Confidence 9999995 68999999999999 77744443
No 36
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.71 E-value=0.47 Score=40.93 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCC
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsP 136 (1229)
...|..++..|++.+|+...+..+..+|++ +.++.--|.++..+.. +. ..|+.++.+|..|.|
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---~~~~~~~g~~~~~~~~---~~-------~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDPNN---AEAYYNLGLAYMKLGK---DY-------EEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---HHHHHHHHHHHHHTTT---HH-------HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCc---cH-------HHHHHHHHHHHHcCc
Confidence 456788999999999999999999999999 8999999999997741 22 489999999999998
No 37
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=91.83 E-value=0.83 Score=41.41 Aligned_cols=83 Identities=20% Similarity=0.301 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000910 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1229)
Q Consensus 70 rGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL 149 (1229)
.|++..|+...++++...|.+. ...+.+.-|.++++... ...|++.+.+ ..+.|..+.+...+|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~-----------y~~A~~~~~~-~~~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGK-----------YEEAIELLQK-LKLDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTH-----------HHHHHHHHHC-HTHHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCC-----------HHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998531 13333435777776542 2578888888 888999999999999999
Q ss_pred HHHhhcCccHHHHHHHHHHH
Q 000910 150 YEAANDGKEYEEVVQECERA 169 (1229)
Q Consensus 150 ~ela~~~~~YeeAv~Ec~RA 169 (1229)
+.++ .|++|+.-..+|
T Consensus 69 ~~l~----~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLG----KYEEAIKALEKA 84 (84)
T ss_dssp HHTT-----HHHHHHHHHHH
T ss_pred HHhC----CHHHHHHHHhcC
Confidence 9994 699998776654
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.74 E-value=1 Score=54.20 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=58.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHH
Q 000910 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1229)
Q Consensus 67 ~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A 146 (1229)
++..|++.+|+..+++.....|.+ +.++.+.|.++.... ....|+.+|.++..+.|+.......+|
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g-----------~~~~A~~~~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 169 ALAENRFDEARALIDEVLTADPGN---VDALLLKGDLLLSLG-----------NIELALAAYRKAIALRPNNPAVLLALA 234 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 344455555555555554444444 344444444443221 124688899999999999999888888
Q ss_pred HHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 147 NLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 147 ~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
..++.. +.|++|...+.+++.+
T Consensus 235 ~~~~~~----g~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 235 TILIEA----GEFEEAEKHADALLKK 256 (899)
T ss_pred HHHHHc----CCHHHHHHHHHHHHHh
Confidence 888877 4689999888888876
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.60 E-value=1.8 Score=43.04 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHh----------hhcCC---h-hH----------
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA----------SIIDD---L-NS---------- 116 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A----------~~~dd---~-~~---------- 116 (1229)
...+.-+...|++++|+...+.....+|.. +.++...|.++.... ..++. + ..
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPNN---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 445677888999999999999999888886 344444444443321 01110 0 00
Q ss_pred -HHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 117 -KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 117 -K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
+..-+..|...+.++..+.|+..+....+|.+++.. +.|++|..-..+++.+
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR----GQYKDARAYLERYQQT 198 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Confidence 011234588888888889998888777777777776 4688888888888887
No 40
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=91.35 E-value=1.1 Score=53.18 Aligned_cols=81 Identities=23% Similarity=0.258 Sum_probs=62.5
Q ss_pred HhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHH
Q 000910 68 LRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYAN 147 (1229)
Q Consensus 68 ~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~ 147 (1229)
+..++..+|++++.+.+..+|.+ +.++.+|+..+.....- .-|+.++.+|+.++|+..+.=..+|.
T Consensus 211 l~~~~E~~AI~ll~~aL~~~p~d---~~LL~~Qa~fLl~k~~~-----------~lAL~iAk~av~lsP~~f~~W~~La~ 276 (395)
T PF09295_consen 211 LLMNEEVEAIRLLNEALKENPQD---SELLNLQAEFLLSKKKY-----------ELALEIAKKAVELSPSEFETWYQLAE 276 (395)
T ss_pred HhcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34456677777777777777777 67777777766644321 57999999999999999999999999
Q ss_pred HHHHHhhcCccHHHHHHHH
Q 000910 148 LLYEAANDGKEYEEVVQEC 166 (1229)
Q Consensus 148 lL~ela~~~~~YeeAv~Ec 166 (1229)
.++.+ ++|+.|+.-+
T Consensus 277 ~Yi~~----~d~e~ALlaL 291 (395)
T PF09295_consen 277 CYIQL----GDFENALLAL 291 (395)
T ss_pred HHHhc----CCHHHHHHHH
Confidence 99999 4799998444
No 41
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.15 E-value=4.6 Score=43.03 Aligned_cols=84 Identities=17% Similarity=0.096 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 58 RkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
.....-|...+..|++.+|+...++++..||+|..++-+++..|..++.+....-...-.......|+..|..-+...||
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 34556678889999999999999999999999988899999999999988654301122367889999999999999999
Q ss_pred hhHH
Q 000910 138 SVEF 141 (1229)
Q Consensus 138 cVei 141 (1229)
|--.
T Consensus 123 S~y~ 126 (203)
T PF13525_consen 123 SEYA 126 (203)
T ss_dssp STTH
T ss_pred chHH
Confidence 9743
No 42
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.11 E-value=1.1 Score=58.58 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHH
Q 000910 71 GNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLY 150 (1229)
Q Consensus 71 GnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ 150 (1229)
|++.+|+......+...|+ +-++...|.++.++. + ...|+.+|.+|..+.|+...+-.-+|.+|.
T Consensus 590 Gr~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG----~-------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS----ANAYVARATIYRQRH----N-------VPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCC----C-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5555555555555555552 233444444444332 1 236888999999999999988888888888
Q ss_pred HHhhcCccHHHHHHHHHHHhccCCCCCccc
Q 000910 151 EAANDGKEYEEVVQECERALAIENPIDPAK 180 (1229)
Q Consensus 151 ela~~~~~YeeAv~Ec~RALaI~sP~DPA~ 180 (1229)
.. +.|++|+.-+.+||.+ .|.+|..
T Consensus 655 ~~----G~~eeAi~~l~~AL~l-~P~~~~a 679 (987)
T PRK09782 655 DS----GDIAQSREMLERAHKG-LPDDPAL 679 (987)
T ss_pred HC----CCHHHHHHHHHHHHHh-CCCCHHH
Confidence 87 3688998889999887 3666543
No 43
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.99 E-value=1.1 Score=46.52 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh----hcCChhHHHHHHHHHHHHHHHHhh
Q 000910 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS----IIDDLNSKQRHLKNAIESAKKAAE 133 (1229)
Q Consensus 58 RkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~----~~dd~~~K~~hL~~Ald~~s~A~~ 133 (1229)
..+.+-+...+..|+.++|++-++.++.-||.+..|.-|++..|..++++.. .+-..+--..+.+.|+..|.+=+.
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 5566677889999999999999999999999999999999999999998853 000222226688999999999999
Q ss_pred hCCChhH
Q 000910 134 LSPHSVE 140 (1229)
Q Consensus 134 LsPncVe 140 (1229)
-.|||--
T Consensus 128 ~yP~S~y 134 (142)
T PF13512_consen 128 RYPNSEY 134 (142)
T ss_pred HCcCChh
Confidence 9999853
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=90.85 E-value=2.1 Score=45.21 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 58 RkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
..--..+..++..|+..+|+..+++++..+|.+.....++...|.++++.. +. ..|+..|.++.++.|+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~----~~-------~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG----DY-------AEAIAAADRFIRLHPN 102 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC----CH-------HHHHHHHHHHHHHCcC
Confidence 344667778899999999999999999999998544467788888888653 33 4799999999999999
Q ss_pred hhHH--H-HHHHHHHHHHhh----cCccHHHHHHHHHHHhccCCCCCc
Q 000910 138 SVEF--A-HFYANLLYEAAN----DGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 138 cVei--A-~f~A~lL~ela~----~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
.... + ..++..++.... +.+.|++|.....+++.. .|..+
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~ 149 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSE 149 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCCh
Confidence 8875 2 344555555411 113688899888888875 34443
No 45
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=90.81 E-value=2.4 Score=51.08 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh------------hcCChhHHHHHH---------
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS------------IIDDLNSKQRHL--------- 121 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~------------~~dd~~~K~~hL--------- 121 (1229)
-+.-+...|+..+|+..+......+|++ ..+++..|.++..... .....+....+-
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3556677888888988888888888888 6777777776664321 000000000000
Q ss_pred -HHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 122 -KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 122 -~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
..|+..+.++..+.|+...+...+|.+++.. +.|++|..-.++|+.+
T Consensus 819 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 819 DPRALEYAEKALKLAPNIPAILDTLGWLLVEK----GEADRALPLLRKAVNI 866 (899)
T ss_pred cHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Confidence 1255566666666666666655566655555 2456666666666664
No 46
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=90.51 E-value=2.5 Score=42.99 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhH
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVe 140 (1229)
...+..++..|++.+|+...+.....+|++...+.+|.--|.++.... +. ..|+.+|.+|..+.|+-.+
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g----~~-------~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG----EH-------TKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHhCcCcHH
Confidence 456678888999999999999998777665222456666676666542 22 4788999999999999988
Q ss_pred HHHHHHHHHHHHhh---cCccHHHHHHHHHHHhcc
Q 000910 141 FAHFYANLLYEAAN---DGKEYEEVVQECERALAI 172 (1229)
Q Consensus 141 iA~f~A~lL~ela~---~~~~YeeAv~Ec~RALaI 172 (1229)
.-..+|.++..+++ ..+.|+.|..-+.+|+.+
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 87778888886652 123566666666665553
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.47 E-value=0.71 Score=39.59 Aligned_cols=53 Identities=28% Similarity=0.487 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCc
Q 000910 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 121 L~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
...|+.+|.++....|++.+.-..+|.+++.. +.|++|..-.++++.+ +|.+|
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~----g~~~~A~~~~~~a~~~-~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ----GRYDEALAYYERALEL-DPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHH-STT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH-CcCCC
Confidence 35899999999999999999999999999988 4689999889888886 36554
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=90.31 E-value=1.7 Score=50.61 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=51.8
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Q 000910 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1229)
Q Consensus 69 rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~l 148 (1229)
..|+..+|+++++.+..+||++ +.++...|.+++..-. ...|.++|.++..+.|+...+ ..+|.+
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~---~~l~l~lgrl~~~~~~-----------~~~A~~~le~al~~~P~~~~~-~~La~~ 370 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDT---PLLWSTLGQLLMKHGE-----------WQEASLAFRAALKQRPDAYDY-AWLADA 370 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhcCCCHHHH-HHHHHH
Confidence 4466677777777777777777 6666666766664421 135666777777777776442 355666
Q ss_pred HHHHhhcCccHHHHHHHHHHHhcc
Q 000910 149 LYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 149 L~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
+-.+++ -++|..-.++||..
T Consensus 371 ~~~~g~----~~~A~~~~~~~l~~ 390 (398)
T PRK10747 371 LDRLHK----PEEAAAMRRDGLML 390 (398)
T ss_pred HHHcCC----HHHHHHHHHHHHhh
Confidence 655543 35565555666554
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=90.19 E-value=1.6 Score=55.22 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
..|.-+...|+..+|++.++++...+|+. +-++...|.+.... .++ ..|+..+.+|..+.|+.+.+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n---~~l~~~lA~l~~~~----g~~-------~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGN---QGLRIDYASVLQAR----GWP-------RAAENELKKAEVLEPRNINL 429 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhc----CCH-------HHHHHHHHHHHhhCCCChHH
Confidence 45566778899999999999999999999 66666666655533 333 48999999999999999997
Q ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccch
Q 000910 142 AHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1229)
Q Consensus 142 A~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l 183 (1229)
=...|..+..+ +.|++|++...++++. .|-+|....+
T Consensus 430 ~~~~a~~al~~----~~~~~A~~~~~~ll~~-~Pd~~~~~~~ 466 (765)
T PRK10049 430 EVEQAWTALDL----QEWRQMDVLTDDVVAR-EPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 77777766666 4699999999999985 4777755544
No 50
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=89.67 E-value=5.3 Score=42.54 Aligned_cols=70 Identities=27% Similarity=0.401 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhH
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVe 140 (1229)
=..|+..+..|++.+|+...+++..++|+|..++.+...-|..+++.- | ...|+..|.+-..+.|++-.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~----~-------y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG----D-------YEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHHCCCCcc
Confidence 357889999999999999999999999999888888888888887552 2 34789999999999999874
Q ss_pred H
Q 000910 141 F 141 (1229)
Q Consensus 141 i 141 (1229)
+
T Consensus 78 ~ 78 (203)
T PF13525_consen 78 A 78 (203)
T ss_dssp H
T ss_pred h
Confidence 3
No 51
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=89.48 E-value=4.2 Score=45.78 Aligned_cols=93 Identities=22% Similarity=0.207 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhH-
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE- 140 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVe- 140 (1229)
..+..+...|++.+|+...+++....|.+ +.++..-|.++.+.. +. ..|+..|.++..+.|+.+.
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g----~~-------~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQG----DY-------AAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHHChhhHHH
Confidence 34556677888888988888888888876 556666666665432 11 2344555555555554432
Q ss_pred HHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 141 FAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 141 iA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
....++.+++.. +.+++|.....+++.+
T Consensus 251 ~~~~l~~~~~~~----g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 251 VLPKLMECYQAL----GDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Confidence 122233333333 2345555555555544
No 52
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=89.43 E-value=1.9 Score=48.74 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=77.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHH
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA 142 (1229)
..+..+++||+..|+..+-++..--|.+ |-++..-|-++.++.+. ..|.-.|.+|..|+||.-.++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~-----------~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRF-----------DEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccCh-----------hHHHHHHHHHHHhccCCchhh
Confidence 5678888999999999998888888888 88888888888876542 378889999999999999999
Q ss_pred HHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 143 HFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 143 ~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
.=+|++++.= ++|+.|+....+|..-
T Consensus 172 nNlgms~~L~----gd~~~A~~lll~a~l~ 197 (257)
T COG5010 172 NNLGMSLLLR----GDLEDAETLLLPAYLS 197 (257)
T ss_pred hhHHHHHHHc----CCHHHHHHHHHHHHhC
Confidence 9999998877 4789999888887763
No 53
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=89.17 E-value=4.3 Score=45.64 Aligned_cols=99 Identities=18% Similarity=0.144 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhh--HHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCC
Q 000910 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYV--ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP 136 (1229)
Q Consensus 59 kEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~--alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsP 136 (1229)
.-..-+.-+...|++.+|+...+.++..+|..... +..+...|.++.+. .+. ..|+..|.++..+.|
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~-------~~A~~~~~~al~~~p 211 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR----GDL-------DAARALLKKALAADP 211 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC----CCH-------HHHHHHHHHHHhHCc
Confidence 34455666788899999999999999888765221 22334455555543 233 478999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 137 HSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 137 ncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
+.++....+|..++.. +.|++|+.-..+++.+
T Consensus 212 ~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 212 QCVRASILLGDLALAQ----GDYAAAIEALERVEEQ 243 (389)
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHH
Confidence 9998888888887776 4689999999999986
No 54
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=88.80 E-value=0.19 Score=55.15 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=26.8
Q ss_pred hcCceeEeecCcCccccCChhHHHHHHHhhhccCC
Q 000910 382 ENKTWRFWVCCRCNEKFADSESHMHHVVQQHMGNL 416 (1229)
Q Consensus 382 knkSWRFWiCp~CskKF~Dt~Sl~~Hm~qkH~~~l 416 (1229)
+...|+ |-|+.|+|+|.-.+=-..|+..||...+
T Consensus 72 e~~~~K-~~C~lc~KlFkg~eFV~KHI~nKH~e~v 105 (214)
T PF04959_consen 72 EEDEDK-WRCPLCGKLFKGPEFVRKHIFNKHPEKV 105 (214)
T ss_dssp SSSSEE-EEE-SSS-EESSHHHHHHHHHHH-HHHH
T ss_pred HHcCCE-ECCCCCCcccCChHHHHHHHhhcCHHHH
Confidence 347888 8999999999999999999999998544
No 55
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=88.56 E-value=3.8 Score=49.69 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhC
Q 000910 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1229)
Q Consensus 56 aIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~Ls 135 (1229)
..-.-+..+..++..|++.+|+...+..+...|++..+..+|+-.|..+..+.. . ..|++++.+|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr----~-------dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE----G-------KKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHhc
Confidence 344556778899999999999999999999999982112457777777776542 2 47899999999885
No 56
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=88.26 E-value=1.6 Score=37.51 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=53.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHH
Q 000910 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1229)
Q Consensus 67 ~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A 146 (1229)
++..|++.+|+++.+.+...+|++ +-+...-|.++++... ...|...+.+.....|+...+....|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~-----------~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQ-----------YDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 467899999999999999999998 6666666777765532 24788899999999999777776666
Q ss_pred H
Q 000910 147 N 147 (1229)
Q Consensus 147 ~ 147 (1229)
.
T Consensus 67 ~ 67 (68)
T PF14559_consen 67 Q 67 (68)
T ss_dssp H
T ss_pred c
Confidence 5
No 57
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.21 E-value=0.9 Score=52.22 Aligned_cols=55 Identities=29% Similarity=0.442 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 114 LNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 114 ~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
..+|..--..||+.|.+|..|.|+.-.+..-.|-++..| +.|+.||..|+.||.|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L----g~~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL----GEYEDAVKDCESALSI 144 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh----cchHHHHHHHHHHHhc
Confidence 344445557899999999999999999999999999999 4799999999999998
No 58
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=87.60 E-value=3.9 Score=54.11 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 121 L~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
...|+.+|.+|..+.|+...+...+|.+++..+ .|++|+..+++++.+ .|.+|...
T Consensus 477 ~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G----~~~~A~~~l~~al~~-~P~~~~~~ 532 (1157)
T PRK11447 477 WAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG----QRSQADALMRRLAQQ-KPNDPEQV 532 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHc-CCCCHHHH
Confidence 357899999999999999999999999988884 689999999999875 46666443
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=87.59 E-value=9.3 Score=44.77 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000910 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1229)
Q Consensus 59 kEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPnc 138 (1229)
+...+++-.+..||...|.+.+.......|+. .+...+.|.+..+. .+.+ .|...+.+|....|+.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---~~~~llaA~aa~~~----g~~~-------~A~~~l~~a~~~~p~~ 151 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---VLNLIKAAEAAQQR----GDEA-------RANQHLEEAAELAGND 151 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHC----CCHH-------HHHHHHHHHHHhCCcC
Confidence 34566788899999999999998877555555 44445555554433 3444 6777888888899998
Q ss_pred -hHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccch
Q 000910 139 -VEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1229)
Q Consensus 139 -VeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l 183 (1229)
+.+-..+|++++.. +.|+.|.....+.+.. .|.+|....+
T Consensus 152 ~l~~~~~~a~l~l~~----~~~~~Al~~l~~l~~~-~P~~~~~l~l 192 (409)
T TIGR00540 152 NILVEIARTRILLAQ----NELHAARHGVDKLLEM-APRHKEVLKL 192 (409)
T ss_pred chHHHHHHHHHHHHC----CCHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 45555568887776 4799999999888887 4888855433
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=87.43 E-value=3.2 Score=52.57 Aligned_cols=90 Identities=14% Similarity=0.059 Sum_probs=57.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHH
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~ 143 (1229)
|.-+...|++.+|++..+.++...|++ +-++...|.++... .+. ..|+..+.+++.+.|+... ..
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~l~~~----g~~-------~eA~~~l~~~l~~~P~~~~-~~ 120 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLILTLADA----GQY-------DEALVKAKQLVSGAPDKAN-LL 120 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC----CCH-------HHHHHHHHHHHHhCCCCHH-HH
Confidence 345566677777777777777777776 44444444443322 222 3677777777777777777 55
Q ss_pred HHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 144 FYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 144 f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
.+|.++... +.+++|+..+.+++.+
T Consensus 121 ~la~~l~~~----g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 121 ALAYVYKRA----GRHWDELRAMTQALPR 145 (765)
T ss_pred HHHHHHHHC----CCHHHHHHHHHHHHHh
Confidence 666666655 3567777777777776
No 61
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=87.30 E-value=4.6 Score=41.10 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh---hcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---IIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~---~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
..-+.-+...|++.+|++..+.....+|.. +-.|..-|.++..+++ ...+......++..|+..|.++..+.|+
T Consensus 76 ~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 76 YNIGLIHTSNGEHTKALEYYFQALERNPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 445677788899999999999999888887 5667777888776653 4455566677889999999999999997
Q ss_pred hh
Q 000910 138 SV 139 (1229)
Q Consensus 138 cV 139 (1229)
..
T Consensus 153 ~~ 154 (168)
T CHL00033 153 NY 154 (168)
T ss_pred cH
Confidence 76
No 62
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=87.12 E-value=8.2 Score=41.00 Aligned_cols=94 Identities=17% Similarity=0.102 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
.-|..+...|+.++|.+.-.=|+..-|.. +.-+.-=|.++.... .+..|+++|.+|..|.||..+.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g-----------~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQK-----------HWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCCCchH
Confidence 44678899999999999999999777777 444444466666443 3568999999999999999999
Q ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 142 AHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 142 A~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
--..|..++.+++ -+.|..-.+.|+.+.
T Consensus 106 ~~~ag~c~L~lG~----~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDN----VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCC----HHHHHHHHHHHHHHh
Confidence 8888999999964 355655555566653
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=87.11 E-value=5.2 Score=53.05 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
+.|-.+...|+..+|++.++ .||.+ +.++..-|.++.+.. +. ..|+++|.++..+.|+.++.
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~----~~p~~---~~~~~~La~~~~~~g----~~-------~~A~~~y~~al~~~P~~~~a 639 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLR----QQPPS---TRIDLTLADWAQQRG----DY-------AAARAAYQRVLTREPGNADA 639 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHH----hCCCC---chHHHHHHHHHHHcC----CH-------HHHHHHHHHHHHhCCCCHHH
Confidence 34556677788888886655 67777 556666666655432 11 25555566666666665555
Q ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHHHhc
Q 000910 142 AHFYANLLYEAANDGKEYEEVVQECERALA 171 (1229)
Q Consensus 142 A~f~A~lL~ela~~~~~YeeAv~Ec~RALa 171 (1229)
-..+|.+++.. +.|++|+..+.+++.
T Consensus 640 ~~~la~~~~~~----g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 640 RLGLIEVDIAQ----GDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhc
Confidence 44455544444 245555555555444
No 64
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=86.95 E-value=0.39 Score=34.99 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=21.3
Q ss_pred eecCcCccccCChhHHHHHHHhh
Q 000910 389 WVCCRCNEKFADSESHMHHVVQQ 411 (1229)
Q Consensus 389 WiCp~CskKF~Dt~Sl~~Hm~qk 411 (1229)
|.|..|.+.|.+...+.+|+..+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999864
No 65
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=86.85 E-value=1.7 Score=37.76 Aligned_cols=52 Identities=37% Similarity=0.575 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCc
Q 000910 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 122 ~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
..|+.++.++..+.|+++..-..+|..++.++ .|.+|...+.++|.+. |.+|
T Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g----~~~~A~~~l~~~l~~~-p~~~ 63 (73)
T PF13371_consen 12 EEALEVLERALELDPDDPELWLQRARCLFQLG----RYEEALEDLERALELS-PDDP 63 (73)
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHhc----cHHHHHHHHHHHHHHC-CCcH
Confidence 47899999999999999999999999999994 6899999999999873 4433
No 66
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.76 E-value=3.9 Score=47.02 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000910 72 NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYE 151 (1229)
Q Consensus 72 nH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~e 151 (1229)
.+...+.+++.-...||++.--| -+=|.+++.+.. ...|+.+|++|.+|.|+..++...||..|+.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW---~~Lg~~ym~~~~-----------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~ 202 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGW---DLLGRAYMALGR-----------ASDALLAYRNALRLAGDNPEILLGLAEALYY 202 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcc-----------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46677778888888999984334 444777776542 2589999999999999999999999999999
Q ss_pred HhhcCccHHHHHHHHHHHhcc
Q 000910 152 AANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 152 la~~~~~YeeAv~Ec~RALaI 172 (1229)
.+. +..=.++..-.+.||..
T Consensus 203 ~a~-~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 203 QAG-QQMTAKARALLRQALAL 222 (287)
T ss_pred hcC-CcccHHHHHHHHHHHhc
Confidence 984 34556665556667764
No 67
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=86.71 E-value=2.4 Score=46.30 Aligned_cols=55 Identities=29% Similarity=0.402 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 122 ~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
..|+.+|.+|..+.|+..++-..++.+|+..+ .|+++..-+.+.... .|.||.-.
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~----~~~~~~~~l~~~~~~-~~~~~~~~ 217 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMG----DYDEAREALKRLLKA-APDDPDLW 217 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC----HHHHHHHHHHHHHHH--HTSCCHC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC----ChHHHHHHHHHHHHH-CcCHHHHH
Confidence 47899999999999999998888888887764 456533223333322 27777654
No 68
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=86.19 E-value=0.51 Score=43.27 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=22.3
Q ss_pred EeecCcCccccCChhHHHHHHHhhh
Q 000910 388 FWVCCRCNEKFADSESHMHHVVQQH 412 (1229)
Q Consensus 388 FWiCp~CskKF~Dt~Sl~~Hm~qkH 412 (1229)
-|.|++|++.|.+...|..||..+|
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCcc
Confidence 5999999999999999999999875
No 69
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=86.00 E-value=4.2 Score=41.09 Aligned_cols=78 Identities=12% Similarity=-0.041 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhH
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVe 140 (1229)
...+.-+.+.|++.+|+......+...|+. +.+|+--|.++..+.. . ..|+.+|.+|..+.|+-.+
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---~~a~~~lg~~l~~~g~----~-------~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASH---PEPVYQTGVCLKMMGE----P-------GLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCC----H-------HHHHHHHHHHHHhCCCChH
Confidence 445566788999999999999999999999 8899999998886643 2 3799999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000910 141 FAHFYANLLYEA 152 (1229)
Q Consensus 141 iA~f~A~lL~el 152 (1229)
+....+.++..+
T Consensus 128 ~~~~~~~~~~~l 139 (144)
T PRK15359 128 WSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHH
Confidence 988888877765
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=85.89 E-value=2.4 Score=46.36 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=61.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHH
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~ 143 (1229)
|.-..+.|+..+|++.++......|++ ..++..-|.+.... .+.+ -++.++..+.++. |+...+-.
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~P~~---~~~~~~l~~~li~~----~~~~----~~~~~l~~~~~~~---~~~~~~~~ 218 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELDPDD---PDARNALAWLLIDM----GDYD----EAREALKRLLKAA---PDDPDLWD 218 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHCTT----CHHH----HHHHHHHHHHHH----HTSCCHCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHC----CChH----HHHHHHHHHHHHC---cCHHHHHH
Confidence 344567788888888888888888887 44443333332211 1111 1445555555555 55556667
Q ss_pred HHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 144 FYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 144 f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
.+|.+++.++ .|++|+.-..+++. .+|.||.-.
T Consensus 219 ~la~~~~~lg----~~~~Al~~~~~~~~-~~p~d~~~~ 251 (280)
T PF13429_consen 219 ALAAAYLQLG----RYEEALEYLEKALK-LNPDDPLWL 251 (280)
T ss_dssp HHHHHHHHHT-----HHHHHHHHHHHHH-HSTT-HHHH
T ss_pred HHHHHhcccc----cccccccccccccc-ccccccccc
Confidence 8899999995 68999988988887 467777665
No 71
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=85.39 E-value=4.8 Score=46.75 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhH
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVe 140 (1229)
..+|..++..|++.+|+..+..++...|.. +.+|+..|.+++.+.. ...|+.+|.+|..+.|+..+
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---~~a~~~lg~~~~~lg~-----------~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIELDPSL---AKAYLRKGTACMKLEE-----------YQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHH
Confidence 566778888999999999999999999998 8888988999887632 24799999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 000910 141 FAHFYANLLYEAA 153 (1229)
Q Consensus 141 iA~f~A~lL~ela 153 (1229)
+...++...-.+.
T Consensus 106 ~~~~l~~~~~kl~ 118 (356)
T PLN03088 106 FTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 8777776666664
No 72
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=85.09 E-value=11 Score=38.03 Aligned_cols=96 Identities=19% Similarity=0.122 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC---
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH--- 137 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn--- 137 (1229)
-+.|......|++.+|+..-+...+.-..+..-..+...-|..+. .+..++ .|+..++++..-+|+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr----~LG~~d-------eA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR----NLGRYD-------EALALLEEALEEFPDDEL 73 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH----HcCCHH-------HHHHHHHHHHHHCCCccc
Confidence 356777888999999999988887532222100111111222222 333444 788888999999999
Q ss_pred hhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhc
Q 000910 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1229)
Q Consensus 138 cVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALa 171 (1229)
.-.+..|+|+.|+.++ .|++|+..+-++|+
T Consensus 74 ~~~l~~f~Al~L~~~g----r~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLG----RPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCC----CHHHHHHHHHHHHH
Confidence 8999999999999995 57999999987776
No 73
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=85.01 E-value=3.7 Score=45.37 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChh
Q 000910 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1229)
Q Consensus 60 Eae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncV 139 (1229)
--+.|...+..|++++|++..+++...||+|..+..+...-|.++++.. + ...|+..|.+...+.|+.-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~----~-------y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA----D-------LPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHhCcCCC
Confidence 3478889999999999999999999999999655555566677777653 2 3489999999999999998
Q ss_pred HH
Q 000910 140 EF 141 (1229)
Q Consensus 140 ei 141 (1229)
.+
T Consensus 104 ~~ 105 (243)
T PRK10866 104 NI 105 (243)
T ss_pred ch
Confidence 65
No 74
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=84.98 E-value=5.1 Score=38.47 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=64.9
Q ss_pred HHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccH
Q 000910 80 MKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEY 159 (1229)
Q Consensus 80 akdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~Y 159 (1229)
.+.+++.+|+. +.++...|..+++... ...|...+.++..+.|+....-..+|..++..+ .|
T Consensus 6 ~~~~l~~~p~~---~~~~~~~a~~~~~~~~-----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~----~~ 67 (135)
T TIGR02552 6 LKDLLGLDSEQ---LEQIYALAYNLYQQGR-----------YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK----EY 67 (135)
T ss_pred HHHHHcCChhh---HHHHHHHHHHHHHccc-----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH----HH
Confidence 56777788888 6777778887775532 247889999999999999998889999999884 58
Q ss_pred HHHHHHHHHHhccCCCCCcccc
Q 000910 160 EEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 160 eeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
.+|..-+.+++.+. |.+|...
T Consensus 68 ~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 68 EEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHhcC-CCChHHH
Confidence 99998899999873 5544443
No 75
>PRK11906 transcriptional regulator; Provisional
Probab=84.77 E-value=4.1 Score=49.40 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000910 72 NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYE 151 (1229)
Q Consensus 72 nH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~e 151 (1229)
+-.+|++.++.....-|++ |.+|..-|.+..-.+. +..|...|.+|..|+||+.....++|.+++.
T Consensus 319 ~~~~a~~~A~rAveld~~D---a~a~~~~g~~~~~~~~-----------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 319 AAQKALELLDYVSDITTVD---GKILAIMGLITGLSGQ-----------AKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred HHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhhcc-----------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 4667787777777777888 8899888886654331 3578899999999999999999999999999
Q ss_pred HhhcCccHHHHHHHHHHHhcc
Q 000910 152 AANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 152 la~~~~~YeeAv~Ec~RALaI 172 (1229)
.+ ..++|...+.+||..
T Consensus 385 ~G----~~~~a~~~i~~alrL 401 (458)
T PRK11906 385 NE----KIEEARICIDKSLQL 401 (458)
T ss_pred cC----CHHHHHHHHHHHhcc
Confidence 85 579999999999986
No 76
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=84.57 E-value=4.5 Score=44.79 Aligned_cols=84 Identities=10% Similarity=0.136 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh-------hcCChhHHHHHHHHHHHHH
Q 000910 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-------IIDDLNSKQRHLKNAIESA 128 (1229)
Q Consensus 56 aIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~-------~~dd~~~K~~hL~~Ald~~ 128 (1229)
+....-.-|.-.++.|++.+|+...++++..||++..++-+++..|..++.+.. .++..+--+...+.|+..+
T Consensus 68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~ 147 (243)
T PRK10866 68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF 147 (243)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence 333444556777999999999999999999999999999999999988766642 2233333366888999999
Q ss_pred HHHhhhCCChh
Q 000910 129 KKAAELSPHSV 139 (1229)
Q Consensus 129 s~A~~LsPncV 139 (1229)
.+-+...|||-
T Consensus 148 ~~li~~yP~S~ 158 (243)
T PRK10866 148 SKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHCcCCh
Confidence 99999999994
No 77
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=84.42 E-value=0.76 Score=39.82 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.3
Q ss_pred ecCcCccccCChhHHHHHHHhhhccC
Q 000910 390 VCCRCNEKFADSESHMHHVVQQHMGN 415 (1229)
Q Consensus 390 iCp~CskKF~Dt~Sl~~Hm~qkH~~~ 415 (1229)
.||+|++ -.|..+|+.|+..+|...
T Consensus 4 ~CP~C~~-~~~~~~L~~H~~~~H~~~ 28 (54)
T PF05605_consen 4 TCPYCGK-GFSESSLVEHCEDEHRSE 28 (54)
T ss_pred CCCCCCC-ccCHHHHHHHHHhHCcCC
Confidence 5999999 678899999999999864
No 78
>PHA00616 hypothetical protein
Probab=83.75 E-value=0.53 Score=40.33 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=22.6
Q ss_pred ecCcCccccCChhHHHHHHHhhhcc
Q 000910 390 VCCRCNEKFADSESHMHHVVQQHMG 414 (1229)
Q Consensus 390 iCp~CskKF~Dt~Sl~~Hm~qkH~~ 414 (1229)
.|+.||+.|....++..|+..-|-.
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCC
Confidence 5999999999999999999877754
No 79
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.85 E-value=4.9 Score=45.55 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 58 RkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
+...+-|...++.|+++.|+.-+++.+..||++..+.-|.++.|..++.+ +++++=-+.+-++|...+..=+.-.||
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPn 148 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPN 148 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc---CCccccCHHHHHHHHHHHHHHHHHCCC
Confidence 34455667888999999999999999999999988899999999887643 444444467889999999999999999
Q ss_pred hh
Q 000910 138 SV 139 (1229)
Q Consensus 138 cV 139 (1229)
|=
T Consensus 149 S~ 150 (254)
T COG4105 149 SR 150 (254)
T ss_pred Cc
Confidence 84
No 80
>smart00355 ZnF_C2H2 zinc finger.
Probab=82.39 E-value=1.1 Score=31.49 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=21.4
Q ss_pred eecCcCccccCChhHHHHHHHhhhc
Q 000910 389 WVCCRCNEKFADSESHMHHVVQQHM 413 (1229)
Q Consensus 389 WiCp~CskKF~Dt~Sl~~Hm~qkH~ 413 (1229)
+.|+.|++.|....++..|+. .|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence 369999999999999999998 765
No 81
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=82.06 E-value=8.2 Score=39.62 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh---hcCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---IIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~---~~dd~~~K~~hL~~Ald~~s~A~~LsPnc 138 (1229)
..|.-+.+.|++.+|++...+.+..+|.. +..+..-|.++..+.. ...+......++..|++++.++..+.|+-
T Consensus 77 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 77 NMGIIYASNGEHDKALEYYHQALELNPKQ---PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 34567788899999999999999999988 6666677888876542 23345555678889999999999999986
Q ss_pred h
Q 000910 139 V 139 (1229)
Q Consensus 139 V 139 (1229)
.
T Consensus 154 ~ 154 (172)
T PRK02603 154 Y 154 (172)
T ss_pred H
Confidence 4
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=81.82 E-value=11 Score=41.96 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChh
Q 000910 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1229)
Q Consensus 60 Eae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncV 139 (1229)
-+-.+.-+...|++.+|+...++.+...|.+ +.+++.-|++++.... +..|+.++.++..+.|+..
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~-----------~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGR-----------FKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCC-----------HHHHHHHHHhhhhccCCCc
Confidence 3445567788999999999999999999998 6777777999987643 2468888888888887643
Q ss_pred HH-HH---HHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 140 EF-AH---FYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 140 ei-A~---f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
.. .+ .+|..++.. +.|++|..-..+++..
T Consensus 183 ~~~~~~~~~la~~~~~~----G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 183 MLRGHNWWHLALFYLER----GDYEAALAIYDTHIAP 215 (355)
T ss_pred chhHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcc
Confidence 32 12 345555555 4789999888888654
No 83
>PHA02768 hypothetical protein; Provisional
Probab=81.04 E-value=0.91 Score=40.60 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=21.2
Q ss_pred ecCcCccccCChhHHHHHHHhhhc
Q 000910 390 VCCRCNEKFADSESHMHHVVQQHM 413 (1229)
Q Consensus 390 iCp~CskKF~Dt~Sl~~Hm~qkH~ 413 (1229)
.|+.||+.|+..++|..||+. |.
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~-H~ 29 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRK-HN 29 (55)
T ss_pred CcchhCCeeccHHHHHHHHHh-cC
Confidence 799999999999999999995 65
No 84
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=80.35 E-value=18 Score=46.96 Aligned_cols=119 Identities=22% Similarity=0.290 Sum_probs=80.7
Q ss_pred CchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHH
Q 000910 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1229)
Q Consensus 52 sd~aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A 131 (1229)
++...+-.++.+ .+...|++..||+.+-.++..-+.-+ +.|...+|...+.+- +-..|.++|-++
T Consensus 411 ~d~~dL~~d~a~--al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~a~c~~~l~-----------e~e~A~e~y~kv 475 (895)
T KOG2076|consen 411 SDDVDLYLDLAD--ALTNIGKYKEALRLLSPITNREGYQN--AFVWYKLARCYMELG-----------EYEEAIEFYEKV 475 (895)
T ss_pred hhhHHHHHHHHH--HHHhcccHHHHHHHHHHHhcCccccc--hhhhHHHHHHHHHHh-----------hHHHHHHHHHHH
Confidence 333444444444 45678999999999999994443332 455566666666553 336899999999
Q ss_pred hhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccchhhhhhhhhhcHHHHHH
Q 000910 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIA 199 (1229)
Q Consensus 132 ~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l~~~~q~~~tt~~~Ri~ 199 (1229)
+.+.|++++.=.-+|.++..++++ ++|+ |. ++.|.+|...++. +....|..||-
T Consensus 476 l~~~p~~~D~Ri~Lasl~~~~g~~----Ekal-Et-----L~~~~~~D~~~~e----~~a~~~e~ri~ 529 (895)
T KOG2076|consen 476 LILAPDNLDARITLASLYQQLGNH----EKAL-ET-----LEQIINPDGRNAE----ACAWEPERRIL 529 (895)
T ss_pred HhcCCCchhhhhhHHHHHHhcCCH----HHHH-HH-----HhcccCCCccchh----hccccHHHHHH
Confidence 999999999999999999999765 5554 22 3455666655442 23445565554
No 85
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=80.15 E-value=5.8 Score=41.46 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
.+|...++.|++.+|.+..++|-.+||.+.++..+..--|..+++.. +. -.|+..|.+-.+|.|++-.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~----~y-------~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG----DY-------EEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc----CH-------HHHHHHHHHHHHhCCCCCCc
Confidence 34566678899999999999999999999777777777777777553 22 37899999999999999863
Q ss_pred HHHHHHHHHHHh
Q 000910 142 AHFYANLLYEAA 153 (1229)
Q Consensus 142 A~f~A~lL~ela 153 (1229)
-||.-+..|+
T Consensus 84 --dYa~Y~~gL~ 93 (142)
T PF13512_consen 84 --DYAYYMRGLS 93 (142)
T ss_pred --cHHHHHHHHH
Confidence 3455555553
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=79.86 E-value=16 Score=41.22 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=67.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHH
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~ 143 (1229)
+.-+...|++++|+.-.+..+...|+. +.++...|.+++.... . ..|+..+.+|..+.|+....+.
T Consensus 105 g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~----~-------~eA~~~~~~al~~~P~~~~~~~ 170 (296)
T PRK11189 105 GIYLTQAGNFDAAYEAFDSVLELDPTY---NYAYLNRGIALYYGGR----Y-------ELAQDDLLAFYQDDPNDPYRAL 170 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCC----H-------HHHHHHHHHHHHhCCCCHHHHH
Confidence 456778899999999999999889998 7788888988886532 2 4899999999999999863211
Q ss_pred HHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 144 FYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 144 f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
.+ .++.....+++|.....+++..
T Consensus 171 ----~~-~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 171 ----WL-YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred ----HH-HHHHccCCHHHHHHHHHHHHhh
Confidence 11 1222234689999888777644
No 87
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=79.62 E-value=7.3 Score=35.83 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhH
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVe 140 (1229)
-..+.-++..|++..|+...+++...+|++...+.++...|.++.++ .+. ..|+..+.++....|++..
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~-------~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL----GDK-------EKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh----CCh-------HHHHHHHHHHHHHCcCChh
Confidence 34677789999999999999999999998754456677778777643 333 3788999999999999764
No 88
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=79.59 E-value=0.78 Score=34.49 Aligned_cols=23 Identities=17% Similarity=0.557 Sum_probs=20.7
Q ss_pred eecCcCccccCChhHHHHHHHhh
Q 000910 389 WVCCRCNEKFADSESHMHHVVQQ 411 (1229)
Q Consensus 389 WiCp~CskKF~Dt~Sl~~Hm~qk 411 (1229)
|.|..|++-|.+...+.+||.++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCcccCCCCcCCHHHHHHHHccC
Confidence 57999999999999999999763
No 89
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=79.06 E-value=33 Score=42.43 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhh--CCChhHHHHHHHHHHH
Q 000910 73 HKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL--SPHSVEFAHFYANLLY 150 (1229)
Q Consensus 73 H~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~L--sPncVeiA~f~A~lL~ 150 (1229)
+.+|+.+.++.+...|+. +.+|-.-+.++..... ... .....+..+.+.+.+|..+ .|..-. ...|..+.
T Consensus 358 ~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~-~~~--~~~~~l~~a~~~~~~a~al~~~~~~~~--~~~ala~~ 429 (517)
T PRK10153 358 LNKASDLLEEILKSEPDF---TYAQAEKALADIVRHS-QQP--LDEKQLAALSTELDNIVALPELNVLPR--IYEILAVQ 429 (517)
T ss_pred HHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHh-cCC--ccHHHHHHHHHHHHHhhhcccCcCChH--HHHHHHHH
Confidence 678999999999999998 5655554444433221 111 1123456677777776665 444432 34444444
Q ss_pred HHhhcCccHHHHHHHHHHHhccC
Q 000910 151 EAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 151 ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
.+.+ +.|++|.++++||+.+.
T Consensus 430 ~~~~--g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 430 ALVK--GKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHhc--CCHHHHHHHHHHHHHcC
Confidence 4432 57999999999999985
No 90
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=78.85 E-value=17 Score=42.60 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh-hcCChhHHHHHHHHHHHHHHHHhhhC
Q 000910 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-IIDDLNSKQRHLKNAIESAKKAAELS 135 (1229)
Q Consensus 57 IRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~-~~dd~~~K~~hL~~Ald~~s~A~~Ls 135 (1229)
.+....-|.-+...|++++|+..+.+...++|.+. ...+. ....+.. ..+|+ ..++..+.++....
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~---~~~~~---~l~~~~~l~~~~~-------~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR---AISLP---LCLPIPRLKPEDN-------EKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc---cchhH---HHHHhhhcCCCCh-------HHHHHHHHHHHHhC
Confidence 34445556788899999999999999999999983 11100 1111111 11333 36788999999999
Q ss_pred CChh--HHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 136 PHSV--EFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 136 PncV--eiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
|+.. .+-..+|.+++.. +.|++|....++|.++
T Consensus 330 p~~~~~~ll~sLg~l~~~~----~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKH----GEFIEAADAFKNVAAC 364 (409)
T ss_pred CCChhHHHHHHHHHHHHHc----ccHHHHHHHHHHhHHh
Confidence 9999 8888899999887 4799998888854443
No 91
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=78.40 E-value=29 Score=34.36 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=67.9
Q ss_pred hhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchh------hHHHH---HHhhhhHHHHhhhcCChhHHHHHHHHH
Q 000910 54 YGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAY------VALIH---RVQGTVCVKVASIIDDLNSKQRHLKNA 124 (1229)
Q Consensus 54 ~aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~------~alvH---~lqG~v~~~~A~~~dd~~~K~~hL~~A 124 (1229)
...+..-+..|......|++..|+..+++.++-+.|.-. .|+.- +++. .+..+....-+-.........|
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~-~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRE-LYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHH-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCHHHH
Confidence 345667788888999999999999999999988855311 12111 1111 1111111100111112233489
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCc---cHHHHHHHHHHHhcc
Q 000910 125 IESAKKAAELSPHSVEFAHFYANLLYEAANDGK---EYEEVVQECERALAI 172 (1229)
Q Consensus 125 ld~~s~A~~LsPncVeiA~f~A~lL~ela~~~~---~YeeAv~Ec~RALaI 172 (1229)
+..+.++..+.|-.=.+-..+-++++.+++... .|+.+.+...+-|+|
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999988888888888888876533 555554444444554
No 92
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=77.77 E-value=4.5 Score=34.66 Aligned_cols=48 Identities=27% Similarity=0.316 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 121 L~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
...|+..|.++....|+..++-..+|..++..+ .|++|...+.+++..
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG----QYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-----HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999994 689998888777764
No 93
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=77.32 E-value=29 Score=41.47 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=62.2
Q ss_pred HHHHHHh---cCCHHHHHHHHHH-HHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000910 63 RALTALR---RGNHKKALRLMKE-LSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1229)
Q Consensus 63 ~AL~~~r---rGnH~KAL~rakd-LasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPnc 138 (1229)
-|+.+-| .|++.+|+.++.. |....+.+ +=.+-+-|.|+-.........+ ..+|..|+++|.+|.++.|+-
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~~~~---~d~~gL~GRIyKD~~~~s~~~d--~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDENPD---PDTLGLLGRIYKDLFLESNFTD--RESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---hHHHHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHHHcCCccc
Confidence 4667777 8999999999999 77777667 7889999999998864322222 335999999999999999764
Q ss_pred hHHHHHHHHHHHHHhhc
Q 000910 139 VEFAHFYANLLYEAAND 155 (1229)
Q Consensus 139 VeiA~f~A~lL~ela~~ 155 (1229)
- ..-=+|-+|..++.+
T Consensus 260 Y-~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 260 Y-SGINAATLLMLAGHD 275 (374)
T ss_pred c-chHHHHHHHHHcCCc
Confidence 2 111233445555443
No 94
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=76.78 E-value=1.4 Score=32.68 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.1
Q ss_pred ecCcCccccCChhHHHHHHHhhh
Q 000910 390 VCCRCNEKFADSESHMHHVVQQH 412 (1229)
Q Consensus 390 iCp~CskKF~Dt~Sl~~Hm~qkH 412 (1229)
.|..|++.|.+...|..|+..-|
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp EETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCccCCccCChhHHHHHhHHhc
Confidence 69999999999999999996433
No 95
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=76.68 E-value=8.3 Score=50.22 Aligned_cols=113 Identities=20% Similarity=0.162 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhC
Q 000910 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELS 135 (1229)
Q Consensus 56 aIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~Ls 135 (1229)
-|..=.-+|.-++.+||+..||..-+.+....|... |-+-..-|+-|.++- ++ ..|+-++.+|..|.
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--aD~rIgig~Cf~kl~----~~-------~~a~~a~~ralqLd 229 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK--ADVRIGIGHCFWKLG----MS-------EKALLAFERALQLD 229 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--CCccchhhhHHHhcc----ch-------hhHHHHHHHHHhcC
Confidence 344556677788889999999999999887777753 333334465555443 22 37899999999999
Q ss_pred CChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccch
Q 000910 136 PHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1229)
Q Consensus 136 PncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l 183 (1229)
|.||....++|.+.+.. ++...|++++.-..||..+ +|-+|-.-+.
T Consensus 230 p~~v~alv~L~~~~l~~-~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~ 275 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNF-NDSDSYKKGVQLLQRAYKE-NNENPVALNH 275 (1018)
T ss_pred hhhHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHhh-cCCCcHHHHH
Confidence 99999999998877765 3446899999999999987 5777755443
No 96
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.22 E-value=6.2 Score=49.41 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh-----------------------hcCChhHHHHHHHHHHH
Q 000910 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS-----------------------IIDDLNSKQRHLKNAIE 126 (1229)
Q Consensus 70 rGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~-----------------------~~dd~~~K~~hL~~Ald 126 (1229)
.++|+.|++-++..+-..|+- +-+|.|+|+=|...-. .+.=-..|+.-+..|.-
T Consensus 434 Qkdh~~Aik~f~RAiQldp~f---aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRF---AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhHHHHHHHHHHHhhccCCcc---chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHH
Confidence 578999999999999999988 7889999987765410 11111224445667888
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 127 SAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 127 ~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
.|.+|+...|...+|..-+...+..+ +.+++|.+-.++|+-+ .|.||..-
T Consensus 511 ~fqkA~~INP~nsvi~~~~g~~~~~~----k~~d~AL~~~~~A~~l-d~kn~l~~ 560 (638)
T KOG1126|consen 511 HFQKAVEINPSNSVILCHIGRIQHQL----KRKDKALQLYEKAIHL-DPKNPLCK 560 (638)
T ss_pred HHHhhhcCCccchhHHhhhhHHHHHh----hhhhHHHHHHHHHHhc-CCCCchhH
Confidence 89999999999999999999999999 5789999999999987 47777643
No 97
>PLN02789 farnesyltranstransferase
Probab=76.11 E-value=19 Score=41.81 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=68.8
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Q 000910 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1229)
Q Consensus 69 rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~l 148 (1229)
..+.+.+||....+.+..+|+. .-+.+..|.+..++. ..+..+++++.++....|++..+=+..+.+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~---ytaW~~R~~iL~~L~----------~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGN---YTVWHFRRLCLEALD----------ADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchh---HHHHHHHHHHHHHcc----------hhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 4568999999999999999999 778888888877652 245788999999999999998887777777
Q ss_pred HHHHhhcCccHHHHHHHHHHHhcc
Q 000910 149 LYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 149 L~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
+..++.. .|++++.-+.++|.+
T Consensus 116 l~~l~~~--~~~~el~~~~kal~~ 137 (320)
T PLN02789 116 AEKLGPD--AANKELEFTRKILSL 137 (320)
T ss_pred HHHcCch--hhHHHHHHHHHHHHh
Confidence 7666431 345666666677775
No 98
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=76.11 E-value=1.7 Score=32.83 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.7
Q ss_pred ecCcCccccCChhHHHHHHH
Q 000910 390 VCCRCNEKFADSESHMHHVV 409 (1229)
Q Consensus 390 iCp~CskKF~Dt~Sl~~Hm~ 409 (1229)
.||.||.+| ..+++..|+.
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 599999999 8888999964
No 99
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.56 E-value=3.3 Score=30.73 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCc
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENS 90 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~S 90 (1229)
-|.-....|++.+|+...++++.+||+|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3566677899999999999999999987
No 100
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.20 E-value=31 Score=39.59 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 58 RkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
.++=..|++++..|++..|..-..+.+.++|+|.+.+-+|+-=|..++.... . ..|...|.....-.|+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~-y----------~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD-Y----------EDAAYIFARVVKDYPK 210 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc-c----------hHHHHHHHHHHHhCCC
Confidence 3488999999999999999999999999999999999999999999997742 1 2445555555556666
Q ss_pred hh---HHHHHHHHHHHHHhhc
Q 000910 138 SV---EFAHFYANLLYEAAND 155 (1229)
Q Consensus 138 cV---eiA~f~A~lL~ela~~ 155 (1229)
|- +-=-=+|+.+..+++.
T Consensus 211 s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCH
Confidence 65 4455577888888654
No 101
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=72.55 E-value=48 Score=43.45 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=71.8
Q ss_pred CchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHH
Q 000910 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1229)
Q Consensus 52 sd~aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A 131 (1229)
.+.+..-+-.+-.++.+..|+..+||+....|-.+||++ .-+..+-|.++.++.+. ..|..|...=
T Consensus 4 ~~~a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~---~~a~vLkaLsl~r~gk~-----------~ea~~~Le~~ 69 (932)
T KOG2053|consen 4 AELAMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNA---LYAKVLKALSLFRLGKG-----------DEALKLLEAL 69 (932)
T ss_pred hhhccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHhcCc-----------hhHHHHHhhh
Confidence 455666677788899999999999999999999999998 55556667777666532 1233444444
Q ss_pred hhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccch
Q 000910 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1229)
Q Consensus 132 ~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l 183 (1229)
..+-|+.-..--++-..+-++ +.|++|+.-.+||+. .+|.++++
T Consensus 70 ~~~~~~D~~tLq~l~~~y~d~----~~~d~~~~~Ye~~~~----~~P~eell 113 (932)
T KOG2053|consen 70 YGLKGTDDLTLQFLQNVYRDL----GKLDEAVHLYERANQ----KYPSEELL 113 (932)
T ss_pred ccCCCCchHHHHHHHHHHHHH----hhhhHHHHHHHHHHh----hCCcHHHH
Confidence 445555444444444445555 345666666666665 35555554
No 102
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=72.40 E-value=1.8 Score=39.11 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=26.7
Q ss_pred eEeecCcCccccCChhHHHHHHHhhhccCC
Q 000910 387 RFWVCCRCNEKFADSESHMHHVVQQHMGNL 416 (1229)
Q Consensus 387 RFWiCp~CskKF~Dt~Sl~~Hm~qkH~~~l 416 (1229)
.|.-||+|+.-|-+..++..|+---|.-.+
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVNKaH~~~~ 45 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVNKAHGWLF 45 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhhHHhhhhh
Confidence 589999999999999999999998886544
No 103
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.17 E-value=2.5 Score=51.30 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 114 LNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 114 ~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
...|..++..|++.|++|.+|.|||+.|..-.|.+.+.. +.|..|++.|-+|+...
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~----e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV----ESFGGALHDALKAIELD 68 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheee----chhhhHHHHHHhhhhcC
Confidence 455677888999999999999999999999999777777 46889999999999974
No 104
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=70.62 E-value=39 Score=39.68 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh---------------hcCChhHH----HHHHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---------------IIDDLNSK----QRHLK 122 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~---------------~~dd~~~K----~~hL~ 122 (1229)
..|.-....|++.+|++.++.+....|++ +-++.+.+.++.++.. ..++.+.. ..|+.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44667788999999999999999999999 7788888877776521 11111111 11211
Q ss_pred HH--------HHHHHHH----hhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCc
Q 000910 123 NA--------IESAKKA----AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 123 ~A--------ld~~s~A----~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
-. .+.+.+. ..-.|+.+++...+|.++..++ .+++|.....+++.. |-||
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g----~~~~A~~~L~~~l~~--~~~~ 296 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD----DHDTAQQIILDGLKR--QYDE 296 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhc--CCCH
Confidence 00 1122222 1345778899999999999994 679999999999983 4455
No 105
>PRK14574 hmsH outer membrane protein; Provisional
Probab=68.76 E-value=31 Score=44.98 Aligned_cols=112 Identities=10% Similarity=0.029 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhh----HHHHHHhhhhHHHHh---hhcC--Ch---hHH---HHHH
Q 000910 57 IKLECERALTALRRGNHKKALRLMKELSSRHENSAYV----ALIHRVQGTVCVKVA---SIID--DL---NSK---QRHL 121 (1229)
Q Consensus 57 IRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~----alvH~lqG~v~~~~A---~~~d--d~---~~K---~~hL 121 (1229)
+.-.=+.|+-.++.|+++.|+....+.....|++... ..++-..|..-.+.. +.++ +. ... ..|+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 3355678899999999999999999999999998311 122222332222211 1111 10 001 0111
Q ss_pred -----HHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 122 -----KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 122 -----~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
..|++.|.++..+.|+..++=..+|+++..+ +.+++|+..+.+++..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~----~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA----GRGGVVLKQATELAER 165 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc----CCHHHHHHHHHHhccc
Confidence 2577777777777777765554444444444 4567777777666554
No 106
>PHA00733 hypothetical protein
Probab=68.71 E-value=3.4 Score=42.05 Aligned_cols=25 Identities=32% Similarity=0.729 Sum_probs=23.4
Q ss_pred eecCcCccccCChhHHHHHHHhhhc
Q 000910 389 WVCCRCNEKFADSESHMHHVVQQHM 413 (1229)
Q Consensus 389 WiCp~CskKF~Dt~Sl~~Hm~qkH~ 413 (1229)
..|+.|++.|....+|..|++.+|-
T Consensus 100 ~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 100 KVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ccCCCCCCccCCHHHHHHHHHHhcC
Confidence 3999999999999999999999993
No 107
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=68.68 E-value=2.8 Score=36.34 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=30.6
Q ss_pred eehhhHHHHHhhhcCchHHHHHHHHHHHHHhcCceeEeecCcCccccCChhHHHHHHHhhh
Q 000910 352 VKVCDIKAHSASLKDGLASDVLAEALAFAEENKTWRFWVCCRCNEKFADSESHMHHVVQQH 412 (1229)
Q Consensus 352 VrI~eLkshy~~v~d~~AadtLsEAL~FaKknkSWRFWiCp~CskKF~Dt~Sl~~Hm~qkH 412 (1229)
++...|..|+...+-.... --+||.|+.++++ .+..||...|
T Consensus 12 ~~~~~L~~H~~~~H~~~~~-----------------~v~CPiC~~~~~~--~l~~Hl~~~H 53 (54)
T PF05605_consen 12 FSESSLVEHCEDEHRSESK-----------------NVVCPICSSRVTD--NLIRHLNSQH 53 (54)
T ss_pred cCHHHHHHHHHhHCcCCCC-----------------CccCCCchhhhhh--HHHHHHHHhc
Confidence 4567888888776432221 1389999988775 8999999887
No 108
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=68.58 E-value=19 Score=43.94 Aligned_cols=69 Identities=20% Similarity=0.034 Sum_probs=51.8
Q ss_pred ccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH-H--HHHHHHHHHHhhcCccHHHHH
Q 000910 87 HENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF-A--HFYANLLYEAANDGKEYEEVV 163 (1229)
Q Consensus 87 Hp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei-A--~f~A~lL~ela~~~~~YeeAv 163 (1229)
.|++ +..|+-.|.+++++-. ...|+.+|++|..+.||..+. + .-+|..+..+ +.+++|+
T Consensus 71 dP~~---a~a~~NLG~AL~~lGr-----------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L----Gr~dEAl 132 (453)
T PLN03098 71 DVKT---AEDAVNLGLSLFSKGR-----------VKDALAQFETALELNPNPDEAQAAYYNKACCHAYR----EEGKKAA 132 (453)
T ss_pred CCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc----CCHHHHH
Confidence 4666 7888888888876532 248999999999999998865 2 3334444444 4799999
Q ss_pred HHHHHHhccC
Q 000910 164 QECERALAIE 173 (1229)
Q Consensus 164 ~Ec~RALaI~ 173 (1229)
...+|||.+.
T Consensus 133 a~LrrALels 142 (453)
T PLN03098 133 DCLRTALRDY 142 (453)
T ss_pred HHHHHHHHhc
Confidence 9999999983
No 109
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.71 E-value=27 Score=36.45 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHH
Q 000910 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIES 127 (1229)
Q Consensus 59 kEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~ 127 (1229)
+-.++|...+..|++.-|+.+++-++.-.|+. .-+..+...++.+++..+++...+--||..|.+.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n---~~ar~l~A~al~~lg~~~~~~~~Rn~yL~~A~EL 137 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDN---EEARQLKADALEQLGYQSENANWRNYYLTGAKEL 137 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 45567777889999999999999999999998 7888999999999999999999888898888764
No 110
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.47 E-value=96 Score=34.22 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------ccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHH
Q 000910 55 GAIKLECERALTALRRGNHKKALRLMKELSSR-------HENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIES 127 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrGnH~KAL~rakdLasr-------Hp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~ 127 (1229)
.++-.=.-+-+.+-.--.-.+|.+++++.+++ +|+- .-++.-=|..++.+|..+.|......|...|.+|
T Consensus 26 dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~---hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~ 102 (186)
T PF06552_consen 26 DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK---HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEY 102 (186)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 33333333334443333333555556665555 4777 7788888999999998888887777899999999
Q ss_pred HHHHhhhCCCh
Q 000910 128 AKKAAELSPHS 138 (1229)
Q Consensus 128 ~s~A~~LsPnc 138 (1229)
|.+|+.+.|+.
T Consensus 103 FqkAv~~~P~n 113 (186)
T PF06552_consen 103 FQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHH-TT-
T ss_pred HHHHHhcCCCc
Confidence 99999999984
No 111
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=66.36 E-value=21 Score=40.71 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
..+++.++.||..+|..-.+.+.++||.|..+.-+....+..+++- .+- ..|+.++.+=..|.|++..+
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~----~~y-------~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN----GEY-------DLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc----ccH-------HHHHHHHHHHHHhCCCCCCh
Confidence 5678899999999999999999999999965555555555555532 233 36888999999999999866
Q ss_pred HH
Q 000910 142 AH 143 (1229)
Q Consensus 142 A~ 143 (1229)
+-
T Consensus 108 dY 109 (254)
T COG4105 108 DY 109 (254)
T ss_pred hH
Confidence 53
No 112
>PF13945 NST1: Salt tolerance down-regulator
Probab=66.36 E-value=3.4 Score=45.07 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=26.4
Q ss_pred hhHhHHHHHhhccCCHHhHcceeEeehhhHHHHH
Q 000910 328 EERRDFVRSYWNSMSLEMKRELLKVKVCDIKAHS 361 (1229)
Q Consensus 328 ~~ri~~Vr~YW~SMt~E~Kr~FLsVrI~eLkshy 361 (1229)
..-...++.||-||+.++|++|++|.=+.+-.=+
T Consensus 101 ~eEre~LkeFW~SL~eeERr~LVkIEKe~VLkkm 134 (190)
T PF13945_consen 101 QEEREKLKEFWESLSEEERRSLVKIEKEAVLKKM 134 (190)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhhHHHHHHHH
Confidence 3445688999999999999999999765554433
No 113
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=65.41 E-value=2.1 Score=39.22 Aligned_cols=26 Identities=23% Similarity=0.620 Sum_probs=0.0
Q ss_pred cCcCccccCChhHHHHHHHhhhccCC
Q 000910 391 CCRCNEKFADSESHMHHVVQQHMGNL 416 (1229)
Q Consensus 391 Cp~CskKF~Dt~Sl~~Hm~qkH~~~l 416 (1229)
|.+|+..|.+.+.+++||...|.-.+
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~ 27 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDI 27 (100)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 89999999999999999999996443
No 114
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=65.37 E-value=41 Score=41.59 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=48.2
Q ss_pred HHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 94 alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
+.+|...|.++... .+. ..|...+.+|..|.|+ ...-.+++.++... +.+++|...+.||+.+
T Consensus 420 ~~~~~ala~~~~~~----g~~-------~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~----G~~~eA~~~~~~A~~L- 482 (517)
T PRK10153 420 PRIYEILAVQALVK----GKT-------DEAYQAINKAIDLEMS-WLNYVLLGKVYELK----GDNRLAADAYSTAFNL- 482 (517)
T ss_pred hHHHHHHHHHHHhc----CCH-------HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhc-
Confidence 45666665554321 233 4799999999999996 44444456666665 4689999999999997
Q ss_pred CCCCcc
Q 000910 174 NPIDPA 179 (1229)
Q Consensus 174 sP~DPA 179 (1229)
+|.+|-
T Consensus 483 ~P~~pt 488 (517)
T PRK10153 483 RPGENT 488 (517)
T ss_pred CCCCch
Confidence 477774
No 115
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=64.95 E-value=13 Score=30.38 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=29.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhh
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQG 101 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG 101 (1229)
-|.-+.+.|++++|.+..++.++.+|++ +-+++.-|
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~~P~~---~~a~~~La 42 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALALDPDD---PEAWRALA 42 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC---HHHHHHhh
Confidence 3567788999999999999999999999 55555443
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.85 E-value=13 Score=46.30 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=66.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHH
Q 000910 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYA 146 (1229)
Q Consensus 67 ~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A 146 (1229)
+.-.|++++|..-.+-.....|++ +++.+--|-. +.|.+ +=.-||.+|.+|+.|-|+=|.-=.=+|
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd---~~lWNRLGAt-------LAN~~----~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPND---YLLWNRLGAT-------LANGN----RSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCch---HHHHHHhhHH-------hcCCc----ccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 344578888888888888888998 5555544432 22222 113799999999999999997666667
Q ss_pred HHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 147 NLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 147 ~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
.+-+-+ ++|+||+...-+||.+.
T Consensus 506 IS~mNl----G~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 506 ISCMNL----GAYKEAVKHLLEALSMQ 528 (579)
T ss_pred hhhhhh----hhHHHHHHHHHHHHHhh
Confidence 776666 48999999999999983
No 117
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.49 E-value=27 Score=41.67 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=61.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhh-CCChh---
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL-SPHSV--- 139 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~L-sPncV--- 139 (1229)
|--++.||+|.+|-..-++|..+||-+ -++....-+.|+-.... -....++.+-.-- .|+-.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtD---lla~kfsh~a~fy~G~~-----------~~~k~ai~kIip~wn~dlp~~s 175 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTD---LLAVKFSHDAHFYNGNQ-----------IGKKNAIEKIIPKWNADLPCYS 175 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchh---hhhhhhhhhHHHhccch-----------hhhhhHHHHhccccCCCCcHHH
Confidence 345788999999998999999999998 44444444444433321 1112222222211 22221
Q ss_pred HHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 140 EFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 140 eiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
=.--.||-.|.|+ +.|.+|+.-+.|||.| +|+|-..+
T Consensus 176 Yv~GmyaFgL~E~----g~y~dAEk~A~ralqi-N~~D~Wa~ 212 (491)
T KOG2610|consen 176 YVHGMYAFGLEEC----GIYDDAEKQADRALQI-NRFDCWAS 212 (491)
T ss_pred HHHHHHHhhHHHh----ccchhHHHHHHhhccC-CCcchHHH
Confidence 1123466667777 4899999999999998 57776544
No 118
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.60 E-value=19 Score=41.17 Aligned_cols=102 Identities=27% Similarity=0.468 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHH--hccCCCCCccccchhhh--hhhh--
Q 000910 117 KQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERA--LAIENPIDPAKESLQDE--SQQK-- 190 (1229)
Q Consensus 117 K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RA--LaI~sP~DPA~~~l~~~--~q~~-- 190 (1229)
|..|+.-+.+--++|..|.||+|.-=.|+...+.+. +.|.+|+....|| |+-.+|+-|+.+ .+-. ..+.
T Consensus 56 k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s----~~~~eaI~~Lqra~sl~r~~~~~~~~d-i~~~L~~ak~~~ 130 (284)
T KOG4642|consen 56 KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS----KGYDEAIKVLQRAYSLLREQPFTFGDD-IPKALRDAKKKR 130 (284)
T ss_pred HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh----ccccHHHHHHHHHHHHHhcCCCCCcch-HHHHHHHHHhCc
Confidence 445666677777899999999998888888888777 6899999999999 555777766665 2211 1111
Q ss_pred -hhcHHHHHH---HHHHHHHHHHHhhhhhhHHHHHhh
Q 000910 191 -ILTADARIA---HVQSELRSLIQKSNIASISTWMKN 223 (1229)
Q Consensus 191 -~tt~~~Ri~---~~r~eL~sLi~kA~i~sis~wmkn 223 (1229)
...-+.||- .++.-|.++|+.-....++.|..|
T Consensus 131 w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s~~~~N 167 (284)
T KOG4642|consen 131 WEVSEEKRIRQELELHSYLESLIEGDRERELSEWQEN 167 (284)
T ss_pred cchhHHHHHHHHhhHHHHHHHHhccchhhHHHHHHHc
Confidence 333444533 234455666665544445677777
No 119
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=62.64 E-value=35 Score=41.58 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCChhHHHHHH----HHHHHHHhhcCccHHHHHHHHHHHhccCC
Q 000910 114 LNSKQRHLKNAIESAKKAAELSPHSVEFAHFY----ANLLYEAANDGKEYEEVVQECERALAIEN 174 (1229)
Q Consensus 114 ~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~----A~lL~ela~~~~~YeeAv~Ec~RALaI~s 174 (1229)
...|.=+++-|.+||+.|..++|+.+.+-+-+ |.+.+-+++ -++|+..|.+||.|-+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr----l~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR----LREAISDCNEALKIDS 318 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC----chhhhhhhhhhhhcCH
Confidence 33455588999999999999999999765432 445555544 4889999999999853
No 120
>PLN02789 farnesyltranstransferase
Probab=62.24 E-value=57 Score=37.98 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 000910 72 NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYE 151 (1229)
Q Consensus 72 nH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~e 151 (1229)
+..+||..+..++..+|++ .-+.+-.|-+..++.. .....+++++.+|..+.|+....=...+-++..
T Consensus 87 ~l~eeL~~~~~~i~~npkn---yqaW~~R~~~l~~l~~---------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKN---YQIWHHRRWLAEKLGP---------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred hHHHHHHHHHHHHHHCCcc---hHHhHHHHHHHHHcCc---------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 5689999999999999999 6666767777665532 123468999999999999999888888888887
Q ss_pred HhhcCccHHHHHHHHHHHhcc
Q 000910 152 AANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 152 la~~~~~YeeAv~Ec~RALaI 172 (1229)
++ .|++++.-|.++|.+
T Consensus 155 l~----~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 155 LG----GWEDELEYCHQLLEE 171 (320)
T ss_pred hh----hHHHHHHHHHHHHHH
Confidence 74 599999999999997
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=61.16 E-value=69 Score=36.81 Aligned_cols=122 Identities=17% Similarity=0.251 Sum_probs=83.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHH
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA 142 (1229)
.|-.+..+|+-+.++..+-.+.-.||.+ .-+|+.+|....+..- ...|+.-+++|.++.|+--+.=
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d---~~ll~~~gk~~~~~g~-----------~~~A~~~~rkA~~l~p~d~~~~ 137 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKD---RELLAAQGKNQIRNGN-----------FGEAVSVLRKAARLAPTDWEAW 137 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCccc---HHHHHHHHHHHHHhcc-----------hHHHHHHHHHHhccCCCChhhh
Confidence 3444555677778888888888788888 6677778877765542 2478999999999999999988
Q ss_pred HHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccchhhhhhhhhhcHHHHHHHHHHHHHH
Q 000910 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAHVQSELRS 207 (1229)
Q Consensus 143 ~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l~~~~q~~~tt~~~Ri~~~r~eL~s 207 (1229)
..++-.|-.++ ..+.|-.....||.+- |.+|-. ..+-........+.+..+..|+.
T Consensus 138 ~~lgaaldq~G----r~~~Ar~ay~qAl~L~-~~~p~~----~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 138 NLLGAALDQLG----RFDEARRAYRQALELA-PNEPSI----ANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred hHHHHHHHHcc----ChhHHHHHHHHHHHhc-cCCchh----hhhHHHHHHHcCCHHHHHHHHHH
Confidence 88888888885 4577888888888873 444422 12222334444455555554443
No 122
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=61.16 E-value=7.6 Score=30.79 Aligned_cols=33 Identities=39% Similarity=0.543 Sum_probs=28.6
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHH
Q 000910 127 SAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVV 163 (1229)
Q Consensus 127 ~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv 163 (1229)
||++|.++.||..+.=.-+|.+|...+ .|++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g----~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQG----DYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCc----CHHhhc
Confidence 589999999999999999999998774 577764
No 123
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.08 E-value=86 Score=36.56 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=74.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHH
Q 000910 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1229)
Q Consensus 66 ~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~ 145 (1229)
-+...|+...|+.--......-|.. +-+.-.-|.+++..+....+. .+-+.+.+|..+.|+-|.--.++
T Consensus 165 ~ym~~~~~~~A~~AY~~A~rL~g~n---~~~~~g~aeaL~~~a~~~~ta--------~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 165 AYMALGRASDALLAYRNALRLAGDN---PEILLGLAEALYYQAGQQMTA--------KARALLRQALALDPANIRALSLL 233 (287)
T ss_pred HHHHhcchhHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCcccH--------HHHHHHHHHHhcCCccHHHHHHH
Confidence 3556666666664444444334666 666666688888777444444 57889999999999999999999
Q ss_pred HHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccch
Q 000910 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1229)
Q Consensus 146 A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l 183 (1229)
|...|+-+ .|++|+.--+.=|....|.||...-+
T Consensus 234 A~~afe~g----~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 234 AFAAFEQG----DYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHcc----cHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999995 79999866666667666677766643
No 124
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.98 E-value=49 Score=38.70 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=70.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHH
Q 000910 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1229)
Q Consensus 66 ~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~ 145 (1229)
++...+++.+|+-.-.+.|.--|.+ |+.|.-...+|.++. ....|+.-...|+.+.|+....---+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4667788999998888888888999 665544444444442 33478999999999999999888888
Q ss_pred HHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 146 ANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 146 A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
.++++-++ .|++|+...++||.|
T Consensus 156 G~A~~~~g----k~~~A~~aykKaLel 178 (304)
T KOG0553|consen 156 GLAYLALG----KYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHccC----cHHHHHHHHHhhhcc
Confidence 88888874 689999889999998
No 125
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=57.77 E-value=7.8 Score=30.11 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.3
Q ss_pred ecCcCccccCChhHHHHHHHhhh
Q 000910 390 VCCRCNEKFADSESHMHHVVQQH 412 (1229)
Q Consensus 390 iCp~CskKF~Dt~Sl~~Hm~qkH 412 (1229)
.|.+|++-|.+..++.+|+..+.
T Consensus 5 ~C~~C~~~~~~~~~~~~H~~gk~ 27 (35)
T smart00451 5 YCKLCNVTFTDEISVEAHLKGKK 27 (35)
T ss_pred EccccCCccCCHHHHHHHHChHH
Confidence 39999999999999999998653
No 126
>PRK14574 hmsH outer membrane protein; Provisional
Probab=57.60 E-value=93 Score=40.83 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 58 RkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
....-.|.-+...|++.+|.++++++...-|+. +-+....+.|.... ..| +.|++.+++|..+.|+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n---~~l~~~~A~v~~~R----g~p-------~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN---QNLRIALASIYLAR----DLP-------RKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhc----CCH-------HHHHHHHHHHhhhCCc
Confidence 333445667788999999999999999999998 55555555554432 233 5899999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccch
Q 000910 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1229)
Q Consensus 138 cVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l 183 (1229)
.+..=...|.....+ ..|++|. +..+.|-=-.|-||....+
T Consensus 483 ~~~~~~~~~~~al~l----~e~~~A~-~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 483 SLILERAQAETAMAL----QEWHQME-LLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred cHHHHHHHHHHHHhh----hhHHHHH-HHHHHHHhhCCCchhHHHH
Confidence 887777777777777 4688875 4455555567888855544
No 127
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.75 E-value=33 Score=38.87 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=53.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChh
Q 000910 65 LTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1229)
Q Consensus 65 L~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncV 139 (1229)
.-++..|++.+|+...+.++..||+|..++-+++..|.++..+ .+.+ .|...|.+.....|++-
T Consensus 188 ~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~----g~~~-------~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 188 QLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK----GDTA-------KAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc----CCHH-------HHHHHHHHHHHHCcCCH
Confidence 4457789999999999999999999988888888888887744 3443 78899999999999986
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=55.63 E-value=58 Score=26.62 Aligned_cols=63 Identities=22% Similarity=0.224 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
...+.-+...|+..+|+...+..+..+|.. ..++...|.++..... ...|...+.++..+.|+
T Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----------~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 38 YNLAAAYYKLGKYEEALEDYEKALELDPDN---AKAYYNLGLAYYKLGK-----------YEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHHh-----------HHHHHHHHHHHHccCCC
Confidence 445666777899999999999999888887 5666666777665431 24677777777777764
No 129
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.63 E-value=85 Score=39.24 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=68.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHH
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~ 143 (1229)
.-.+|..|++.+|++.-.+.+.+.|++ +.+.-=.+..|.++ .+.-.|+.....+.+|.|+-+.-=.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~D---a~lYsNRAac~~kL-----------~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPED---ARLYSNRAACYLKL-----------GEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHhcCchHHHHHH
Confidence 378999999999999999999999999 54444444444333 3445677778888888888775444
Q ss_pred HHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 144 FYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 144 f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
-=|..|+.+ +.|.+|+.-+..||..
T Consensus 431 RKg~al~~m----k~ydkAleay~eale~ 455 (539)
T KOG0548|consen 431 RKGAALRAM----KEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 447777777 5789998888888875
No 130
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=53.30 E-value=76 Score=41.15 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=65.4
Q ss_pred hhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhc
Q 000910 92 YVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1229)
Q Consensus 92 ~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALa 171 (1229)
..+..+++.|-.+-.+|+..-.+.-+.+++.-+++++.+|+.+.|+-. .+-||.-+-|..-+ .-+.|+.-|+|+|+
T Consensus 431 l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-~~if~lalq~A~~R---~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 431 LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-LVIFYLALQYAEQR---QLTSALDYAREALA 506 (799)
T ss_pred hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 347899999999888888877788889999999999999999999887 45555555555543 35789999999999
Q ss_pred cCCCCCc
Q 000910 172 IENPIDP 178 (1229)
Q Consensus 172 I~sP~DP 178 (1229)
+..-.++
T Consensus 507 l~~~~~~ 513 (799)
T KOG4162|consen 507 LNRGDSA 513 (799)
T ss_pred hcCCccH
Confidence 8433333
No 131
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.40 E-value=1.5e+02 Score=32.79 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhh
Q 000910 75 KALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAAN 154 (1229)
Q Consensus 75 KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~ 154 (1229)
.|.+.++.-..+.|.+ +-.++-=|....++|.--..++.| .-+..|+.=|.+|..|.|+--+-.--++.++...|.
T Consensus 9 ~ark~aea~y~~nP~D---adnL~~WG~ALLELAqfk~g~es~-~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLD---ADNLTNWGGALLELAQFKQGPESK-KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHh---HHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5788888888899999 788888899999887433334444 577889999999999999998888888888888776
Q ss_pred c-------CccHHHHHHHHHHHhcc
Q 000910 155 D-------GKEYEEVVQECERALAI 172 (1229)
Q Consensus 155 ~-------~~~YeeAv~Ec~RALaI 172 (1229)
- ..+|++|.....+|..+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc
Confidence 3 12799998888888876
No 132
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=50.04 E-value=13 Score=39.86 Aligned_cols=27 Identities=30% Similarity=0.599 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCceeEeecCcCccccC
Q 000910 370 SDVLAEALAFAEENKTWRFWVCCRCNEKFA 399 (1229)
Q Consensus 370 adtLsEAL~FaKknkSWRFWiCp~CskKF~ 399 (1229)
+.-+..+|...++++ .|+||.||=-+-
T Consensus 119 ~~~~~~~Le~~~~~~---~~vC~vCGy~~~ 145 (166)
T COG1592 119 AEMFRGLLERLEEGK---VWVCPVCGYTHE 145 (166)
T ss_pred HHHHHHHHHhhhcCC---EEEcCCCCCccc
Confidence 457899999998777 999999975433
No 133
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.64 E-value=23 Score=40.58 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 118 QRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 118 ~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
-+|+-.|++||++|.-+.|+-+.|..=.|.-.+.+ +.++.+...|+|||.+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql 73 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQL 73 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhc
Confidence 45677899999999999999999999988888886 5789999999999998
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=49.44 E-value=2e+02 Score=28.87 Aligned_cols=100 Identities=12% Similarity=0.180 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhh
Q 000910 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~L 134 (1229)
-+.......|..++..|+.++|.+..+.++...|.....+++..--+.+.+.. .+.+ .|+..+.....
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~----~~~d-------~Al~~L~~~~~- 113 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ----GQYD-------EALATLQQIPD- 113 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc----CCHH-------HHHHHHHhccC-
Confidence 45666777888889999999999999999988766533344444334444433 2222 34444433111
Q ss_pred CCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHh
Q 000910 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERAL 170 (1229)
Q Consensus 135 sPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RAL 170 (1229)
.|-.-......+.+++.. +.|++|....++||
T Consensus 114 ~~~~~~~~~~~Gdi~~~~----g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 EAFKALAAELLGDIYLAQ----GDYDEARAAYQKAL 145 (145)
T ss_pred cchHHHHHHHHHHHHHHC----CCHHHHHHHHHHhC
Confidence 111112334455555555 47899988887775
No 135
>PHA00732 hypothetical protein
Probab=49.07 E-value=11 Score=35.69 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.7
Q ss_pred ecCcCccccCChhHHHHHHHhhhc
Q 000910 390 VCCRCNEKFADSESHMHHVVQQHM 413 (1229)
Q Consensus 390 iCp~CskKF~Dt~Sl~~Hm~qkH~ 413 (1229)
.|..||+.|....+|..|+...|.
T Consensus 3 ~C~~Cgk~F~s~s~Lk~H~r~~H~ 26 (79)
T PHA00732 3 KCPICGFTTVTLFALKQHARRNHT 26 (79)
T ss_pred cCCCCCCccCCHHHHHHHhhcccC
Confidence 599999999999999999986665
No 136
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=47.81 E-value=2.5e+02 Score=34.16 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=82.8
Q ss_pred CchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHH
Q 000910 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKA 131 (1229)
Q Consensus 52 sd~aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A 131 (1229)
.+.+.+-++.|--..++.+|-...||..--..+.-.|++ ..+.+-.||++.+..+. +.|+.=+++-
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---Y~aifrRaT~yLAmGks-----------k~al~Dl~rV 98 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---YQAIFRRATVYLAMGKS-----------KAALQDLSRV 98 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhhhcCC-----------ccchhhHHHH
Confidence 344778888888899999999999997777777777888 89999999999988754 5788889999
Q ss_pred hhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 132 AELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 132 ~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
.+|-||-.-----.+.+|+..+ .|+.|.+....-|.-
T Consensus 99 lelKpDF~~ARiQRg~vllK~G----ele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLKQG----ELEQAEADFDQVLQH 135 (504)
T ss_pred HhcCccHHHHHHHhchhhhhcc----cHHHHHHHHHHHHhc
Confidence 9999986654445566777663 689999888777764
No 137
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.79 E-value=2e+02 Score=37.15 Aligned_cols=78 Identities=24% Similarity=0.267 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCc-cccchhhhhhh--hhhcHHHH
Q 000910 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP-AKESLQDESQQ--KILTADAR 197 (1229)
Q Consensus 121 L~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP-A~~~l~~~~q~--~~tt~~~R 197 (1229)
..+|++||.+|....|---+-..-+|.+. +|.+--.+|.+-.+.||.|- |--| |--|+....|. ..+--..|
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~----kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIY----KDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHh----hccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccchHHH
Confidence 45899999999999975333333333322 33445678888899999984 2222 33334444443 56666667
Q ss_pred HHHHHH
Q 000910 198 IAHVQS 203 (1229)
Q Consensus 198 i~~~r~ 203 (1229)
+.++-+
T Consensus 513 ~~kl~s 518 (966)
T KOG4626|consen 513 MKKLVS 518 (966)
T ss_pred HHHHHH
Confidence 666544
No 138
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=47.17 E-value=13 Score=30.67 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=22.2
Q ss_pred CceeEeecCcCccccC----ChhHHHHHHHhhhc
Q 000910 384 KTWRFWVCCRCNEKFA----DSESHMHHVVQQHM 413 (1229)
Q Consensus 384 kSWRFWiCp~CskKF~----Dt~Sl~~Hm~qkH~ 413 (1229)
+...+..|-+|++.|. .|..|+.|+..+|+
T Consensus 12 ~~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~hp 45 (45)
T PF02892_consen 12 GDKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKHP 45 (45)
T ss_dssp GCSS-EEETTTTEE-----SSTHHHHHHHHHTTH
T ss_pred CCcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhCc
Confidence 3456789999988665 47999999988884
No 139
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.99 E-value=96 Score=38.76 Aligned_cols=113 Identities=12% Similarity=0.223 Sum_probs=70.3
Q ss_pred chhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHh------------hhcCChhHHHH-
Q 000910 53 TYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA------------SIIDDLNSKQR- 119 (1229)
Q Consensus 53 d~aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A------------~~~dd~~~K~~- 119 (1229)
+.+.+..-|.+|+.+..+.+..+-..-..+...-.|.. +-|+|-.|.|.+-+- -.+ ||.--..
T Consensus 356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n---~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-~pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN---PDVYYHRGQMRFLLQQYEEAIADFQKAISL-DPENAYAY 431 (606)
T ss_pred CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC---CchhHhHHHHHHHHHHHHHHHHHHHHHhhc-ChhhhHHH
Confidence 33444446777777777776666665555556666666 455555565544321 011 2222222
Q ss_pred -----------HHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 120 -----------HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 120 -----------hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
-+..+.-.|..++.-+|+|.|--.|+|..|-.= ..+.+|+.-...|+.++
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq----qqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ----QQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH----HhHHHHHHHHHHHHhhc
Confidence 334556677889999999999999999998665 25666776666666654
No 140
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.87 E-value=3.5e+02 Score=30.99 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=61.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHH
Q 000910 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1229)
Q Consensus 66 ~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~ 145 (1229)
.+|..|++.+|+.---+...--|.- +- .++.-++..-|.. -+|.+--..|++..++|.+|.|--..--.-.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~---~~--e~rsIly~Nraaa----~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPST---ST--EERSILYSNRAAA----LIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccc---cH--HHHHHHHhhhHHH----HHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4678888888876555554444432 11 2232222222211 3466667789999999999998665544444
Q ss_pred HHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 146 A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
|.++-.+ ..|++|+...+.-|.+ ||..+
T Consensus 175 Aeayek~----ek~eealeDyKki~E~----dPs~~ 202 (271)
T KOG4234|consen 175 AEAYEKM----EKYEEALEDYKKILES----DPSRR 202 (271)
T ss_pred HHHHHhh----hhHHHHHHHHHHHHHh----CcchH
Confidence 5555444 4688888888877775 66665
No 141
>PRK11906 transcriptional regulator; Provisional
Probab=46.69 E-value=2.3e+02 Score=35.23 Aligned_cols=116 Identities=8% Similarity=-0.072 Sum_probs=83.3
Q ss_pred hhhHHHHHHHHHHHhcCC---HHHHHHHHHHHH---HhccCchhhHHHHHHhhhhHHHHhh-hcCChhHHHHHHHHHHHH
Q 000910 55 GAIKLECERALTALRRGN---HKKALRLMKELS---SRHENSAYVALIHRVQGTVCVKVAS-IIDDLNSKQRHLKNAIES 127 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrGn---H~KAL~rakdLa---srHp~S~~~alvH~lqG~v~~~~A~-~~dd~~~K~~hL~~Ald~ 127 (1229)
+-+-..+-+|+..+.+|. ...|+.+..+.. .-.|+- +.+|......|...+- ...+ ...-...|+..
T Consensus 253 a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~---a~a~~~lA~~h~~~~~~g~~~---~~~~~~~a~~~ 326 (458)
T PRK11906 253 HYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK---TECYCLLAECHMSLALHGKSE---LELAAQKALEL 326 (458)
T ss_pred chhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc---HHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHH
Confidence 334445778888877775 567888888888 555665 7777777776666531 2222 24566789999
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 128 AKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 128 ~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
+.+|+++.|+--..-..+|.++...+ .|..+....+||+.+ +|..+...
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~----~~~~a~~~f~rA~~L-~Pn~A~~~ 375 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSG----QAKVSHILFEQAKIH-STDIASLY 375 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhc----chhhHHHHHHHHhhc-CCccHHHH
Confidence 99999999998877777777777774 489999999999997 35444433
No 142
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=45.81 E-value=1.9e+02 Score=32.25 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCch-h-----------------------hHHHHHHhhhhHHHHhhhc
Q 000910 56 AIKLECERALTALRRGNHKKALRLMKELSSRHENSA-Y-----------------------VALIHRVQGTVCVKVASII 111 (1229)
Q Consensus 56 aIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~-~-----------------------~alvH~lqG~v~~~~A~~~ 111 (1229)
..+-..+.|.-++.+|++.+|+..+++++....... . ...-....+.+|..+|.=.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999997331210 0 0001122233333333211
Q ss_pred CCh--hHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhc
Q 000910 112 DDL--NSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAAND 155 (1229)
Q Consensus 112 dd~--~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~ 155 (1229)
+.. .....-...++..|..|+.+.|+....-+.+|.....+-..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~ 308 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES 308 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence 100 01122335689999999999999998777777777766443
No 143
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=44.38 E-value=16 Score=32.84 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=20.3
Q ss_pred EeecCcCccccCChhHHHHHHHhhhc
Q 000910 388 FWVCCRCNEKFADSESHMHHVVQQHM 413 (1229)
Q Consensus 388 FWiCp~CskKF~Dt~Sl~~Hm~qkH~ 413 (1229)
==.||.|+--+.....|..||+--|.
T Consensus 24 PatCP~C~a~~~~srnLrRHle~~H~ 49 (54)
T PF09237_consen 24 PATCPICGAVIRQSRNLRRHLEIRHF 49 (54)
T ss_dssp -EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred CCCCCcchhhccchhhHHHHHHHHhc
Confidence 34799999999999999999999985
No 144
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.01 E-value=1.2e+02 Score=38.74 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHh
Q 000910 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA 108 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A 108 (1229)
=.+.+........+..=++.+|+...+.+-..|++. ..|+-..|..|+++.
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt---~wvl~q~GrayFEl~ 367 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT---GWVLSQLGRAYFELI 367 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc---hHHHHHHHHHHHHHH
Confidence 356666777777777779999999999988888998 677777788777763
No 145
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=42.69 E-value=19 Score=30.90 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=22.0
Q ss_pred eEeecCcCcccc-----CChhHHHHHHHhhhcc
Q 000910 387 RFWVCCRCNEKF-----ADSESHMHHVVQQHMG 414 (1229)
Q Consensus 387 RFWiCp~CskKF-----~Dt~Sl~~Hm~qkH~~ 414 (1229)
-+=+|.+|++.+ ..|..|+.||...|+.
T Consensus 17 ~~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~~ 49 (50)
T smart00614 17 QRAKCKYCGKKLSRSSKGGTSNLRRHLRRKHPA 49 (50)
T ss_pred eEEEecCCCCEeeeCCCCCcHHHHHHHHhHCcC
Confidence 345788998866 4568999999998864
No 146
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=42.48 E-value=2.4e+02 Score=35.42 Aligned_cols=143 Identities=19% Similarity=0.130 Sum_probs=80.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcc----C-chhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHE----N-SAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakdLasrHp----~-S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPnc 138 (1229)
|.-+...|++.+|.-+-++.-+.-. . +..|+.+|+-=+..++.. .+-+--..|+.+|++.+.+ .+..+.
T Consensus 248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~----GKf~EA~~~~e~Al~I~~~--~~~~~~ 321 (508)
T KOG1840|consen 248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ----GKFAEAEEYCERALEIYEK--LLGASH 321 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHHHHHH--hhccCh
Confidence 3445556777777777666654431 1 212233333223333222 2222235688999999998 555666
Q ss_pred hHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCC-CCCccccchh--hhhhhhhhcHHHHHHHHHHHHHHHHHhhh
Q 000910 139 VEFAHFYANLLYEAANDGKEYEEVVQECERALAIEN-PIDPAKESLQ--DESQQKILTADARIAHVQSELRSLIQKSN 213 (1229)
Q Consensus 139 VeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~s-P~DPA~~~l~--~~~q~~~tt~~~Ri~~~r~eL~sLi~kA~ 213 (1229)
.+.+..+-.+-...-. .+.|++|+.=.++||.|.. -..++.-+++ +.+=...+-.++|..++.+-+++.|++.+
T Consensus 322 ~~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 6666655544333322 2479999999999999954 2222222333 22222455666777777777777776654
No 147
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=42.26 E-value=9.7 Score=38.19 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=12.9
Q ss_pred eecCcCccccCChh
Q 000910 389 WVCCRCNEKFADSE 402 (1229)
Q Consensus 389 WiCp~CskKF~Dt~ 402 (1229)
++||.||+||.|..
T Consensus 10 R~Cp~CG~kFYDLn 23 (108)
T PF09538_consen 10 RTCPSCGAKFYDLN 23 (108)
T ss_pred ccCCCCcchhccCC
Confidence 58999999999987
No 148
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.93 E-value=1.2e+02 Score=37.69 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhh
Q 000910 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~L 134 (1229)
=.+|+|-|+|..+|+ .|| .-+|+. .-+|.|-|+-+++.- |. -+|+++|++|+..
T Consensus 340 YSlr~eHEKAv~YFk-----RAL-------kLNp~~---~~aWTLmGHEyvEmK----Nt-------~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFK-----RAL-------KLNPKY---LSAWTLMGHEYVEMK----NT-------HAAIESYRRAVDI 393 (559)
T ss_pred HHHHHhHHHHHHHHH-----HHH-------hcCcch---hHHHHHhhHHHHHhc----cc-------HHHHHHHHHHHhc
Confidence 345666666666655 344 457888 788899999998762 32 2677888888877
Q ss_pred CCChh
Q 000910 135 SPHSV 139 (1229)
Q Consensus 135 sPncV 139 (1229)
.|---
T Consensus 394 ~p~Dy 398 (559)
T KOG1155|consen 394 NPRDY 398 (559)
T ss_pred CchhH
Confidence 77654
No 149
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=40.73 E-value=13 Score=38.41 Aligned_cols=21 Identities=29% Similarity=0.740 Sum_probs=14.6
Q ss_pred EeecCcCccccCChhHHHHHHH
Q 000910 388 FWVCCRCNEKFADSESHMHHVV 409 (1229)
Q Consensus 388 FWiCp~CskKF~Dt~Sl~~Hm~ 409 (1229)
||.||.|||-|= .-+|+.+|.
T Consensus 124 f~~C~~C~kiyW-~GsH~~~~~ 144 (147)
T PF01927_consen 124 FWRCPGCGKIYW-EGSHWRRME 144 (147)
T ss_pred EEECCCCCCEec-ccccHHHHH
Confidence 999999998663 234555554
No 150
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=40.08 E-value=8 Score=33.65 Aligned_cols=19 Identities=37% Similarity=0.756 Sum_probs=7.6
Q ss_pred HHHHhcCceeEeecCcCcc
Q 000910 378 AFAEENKTWRFWVCCRCNE 396 (1229)
Q Consensus 378 ~FaKknkSWRFWiCp~Csk 396 (1229)
+|.+-+.....|.||.|++
T Consensus 31 ~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 31 SFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp HHHHHHHHS---B-TTT--
T ss_pred HHHHHhhccCCeECcCCcC
Confidence 3444444444499999975
No 151
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=38.78 E-value=77 Score=36.68 Aligned_cols=73 Identities=22% Similarity=0.181 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhh---------hcCChhH--HHHHHHHHHHHHHHHhhhCCChhHHHHH
Q 000910 76 ALRLMKELSSRHENSAYVALIHRVQGTVCVKVAS---------IIDDLNS--KQRHLKNAIESAKKAAELSPHSVEFAHF 144 (1229)
Q Consensus 76 AL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~---------~~dd~~~--K~~hL~~Ald~~s~A~~LsPncVeiA~f 144 (1229)
-+.+++.-+...|.| ..+|.+.|..++..|- .+.+..- -..++..|+..+.+|..|+|.++--
T Consensus 62 ~~~~LkaWv~a~P~S---y~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A--- 135 (277)
T PF13226_consen 62 RLAVLKAWVAACPKS---YHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAA--- 135 (277)
T ss_pred HHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH---
Confidence 556689999999999 9999999999999862 1112111 1336667999999999999999743
Q ss_pred HHHHHHHHhhc
Q 000910 145 YANLLYEAAND 155 (1229)
Q Consensus 145 ~A~lL~ela~~ 155 (1229)
+..|+.++..
T Consensus 136 -~~~m~~~s~~ 145 (277)
T PF13226_consen 136 -AIGMINISAY 145 (277)
T ss_pred -HHHHHHHHhh
Confidence 3445555544
No 152
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=38.70 E-value=2.1e+02 Score=30.76 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccchhhhhhhhhhcHHHHHHH
Q 000910 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAH 200 (1229)
Q Consensus 121 L~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l~~~~q~~~tt~~~Ri~~ 200 (1229)
+..|...|+-...+.|+..++.-.+|..+=.+ +.|++|+.-..||+.+. |.||..+-- ...-......+..
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~----g~~~~AI~aY~~A~~L~-~ddp~~~~~----ag~c~L~lG~~~~ 121 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ----KHWGEAIYAYGRAAQIK-IDAPQAPWA----AAECYLACDNVCY 121 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcC-CCCchHHHH----HHHHHHHcCCHHH
Confidence 35788999999999999999999999988888 47999999999999986 888877632 1222334445566
Q ss_pred HHHHHHHHHHhh
Q 000910 201 VQSELRSLIQKS 212 (1229)
Q Consensus 201 ~r~eL~sLi~kA 212 (1229)
+++-++..|..+
T Consensus 122 A~~aF~~Ai~~~ 133 (157)
T PRK15363 122 AIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHh
Confidence 777777777665
No 153
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=37.42 E-value=1.4e+02 Score=35.84 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHh--hhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Q 000910 71 GNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA--SIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1229)
Q Consensus 71 GnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A--~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~l 148 (1229)
.+..||+..+++|..--|..-.+-++| .+-++| ...++. +..|++.+.+|..-.|+||.-.-.++++
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAq-----fyCELAq~~~~~~~------~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQ-----FYCELAQQALASSD------VDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHH-----HHHHHHHHHhhhhh------HHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 457789999998884333331122222 223333 222221 2358999999999999999988888887
Q ss_pred HHHHhhcCccHHHHHHHHHHHhc
Q 000910 149 LYEAANDGKEYEEVVQECERALA 171 (1229)
Q Consensus 149 L~ela~~~~~YeeAv~Ec~RALa 171 (1229)
...- +.|++||...+|.+.
T Consensus 224 ~~~~----g~y~~AV~~~e~v~e 242 (389)
T COG2956 224 ELAK----GDYQKAVEALERVLE 242 (389)
T ss_pred HHhc----cchHHHHHHHHHHHH
Confidence 7666 479999977666665
No 154
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=37.33 E-value=27 Score=34.13 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=25.2
Q ss_pred hcCceeEeecCcCccccCChhHHHHHHHhhhc
Q 000910 382 ENKTWRFWVCCRCNEKFADSESHMHHVVQQHM 413 (1229)
Q Consensus 382 knkSWRFWiCp~CskKF~Dt~Sl~~Hm~qkH~ 413 (1229)
-|..+++|||..|.--..- .+...|+..+|-
T Consensus 5 y~~~~~vlIC~~C~~av~~-~~v~~HL~~~H~ 35 (109)
T PF12013_consen 5 YNPEYRVLICRQCQYAVQP-SEVESHLRKRHH 35 (109)
T ss_pred EcCcCCEEEeCCCCcccCc-hHHHHHHHHhcc
Confidence 5788999999999655444 889999998884
No 155
>PRK15331 chaperone protein SicA; Provisional
Probab=35.72 E-value=3e+02 Score=29.98 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=61.3
Q ss_pred chhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHh
Q 000910 53 TYGAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAA 132 (1229)
Q Consensus 53 d~aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~ 132 (1229)
+...+-.=-.-|..++..|+.++|..+-.=||.-.|.. +--..-=|.+++.. .-...|+++|..|.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---~~Y~~GLaa~~Q~~-----------k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---PDYTMGLAAVCQLK-----------KQFQKACDLYAVAF 98 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 33455555567799999999999999999999655554 22111112222221 12357999999999
Q ss_pred hhCCChhHHHHHHHHHHHHHhh
Q 000910 133 ELSPHSVEFAHFYANLLYEAAN 154 (1229)
Q Consensus 133 ~LsPncVeiA~f~A~lL~ela~ 154 (1229)
.|.+|........|.-++.+++
T Consensus 99 ~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 99 TLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HcccCCCCccchHHHHHHHhCC
Confidence 9999999987777888888853
No 156
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=35.42 E-value=4.7e+02 Score=35.19 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=67.6
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhH---------HHHHHHHHHHHHHHHhhh
Q 000910 65 LTAL-RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNS---------KQRHLKNAIESAKKAAEL 134 (1229)
Q Consensus 65 L~~~-rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~---------K~~hL~~Ald~~s~A~~L 134 (1229)
+... ..|+.++|+++.++....+|++ ..+++..|.++++.-. +.|... +..+ .+++.+..-...
T Consensus 38 i~~~~~~~~~deai~i~~~~l~~~P~~---i~~yy~~G~l~~q~~~-~~~~~lv~~l~~~~~~~~~--~~ve~~~~~i~~ 111 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLKEHKKS---ISALYISGILSLSRRP-LNDSNLLNLIDSFSQNLKW--AIVEHICDKILL 111 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCcc---eehHHHHHHHHHhhcc-hhhhhhhhhhhhcccccch--hHHHHHHHHHHh
Confidence 4444 6889999999999999999999 7888888887776532 222110 0011 344444444444
Q ss_pred CCChhHHHHHHHHHHHHHhhc---CccHHHHHHHHHHHhccCCCCCcc-ccchhh
Q 000910 135 SPHSVEFAHFYANLLYEAAND---GKEYEEVVQECERALAIENPIDPA-KESLQD 185 (1229)
Q Consensus 135 sPncVeiA~f~A~lL~ela~~---~~~YeeAv~Ec~RALaI~sP~DPA-~~~l~~ 185 (1229)
.|+.-. +||.+|.- .+.+++|.+..+|+|.+. |.+|. .++++|
T Consensus 112 ~~~~k~-------Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY 158 (906)
T PRK14720 112 YGENKL-------ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLAT 158 (906)
T ss_pred hhhhhH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 444333 33333322 357899999999999997 66654 444443
No 157
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=34.41 E-value=66 Score=24.34 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=24.4
Q ss_pred HHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCCh
Q 000910 95 LIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHS 138 (1229)
Q Consensus 95 lvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPnc 138 (1229)
.++...|.+++.+.. ...|+.+|.+|..+.|+.
T Consensus 2 ~~~~~~g~~~~~~~~-----------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD-----------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHCcCC
Confidence 456667777776542 358999999999999973
No 158
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=33.51 E-value=84 Score=27.78 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=34.9
Q ss_pred HHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhh----CCCh---hHHHHHHHHHHHHHhhcCccHHHHHHHH
Q 000910 94 ALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL----SPHS---VEFAHFYANLLYEAANDGKEYEEVVQEC 166 (1229)
Q Consensus 94 alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~L----sPnc---VeiA~f~A~lL~ela~~~~~YeeAv~Ec 166 (1229)
+.++..-|.++..+. +-+ .|+++|.+|..+ -|+. +.+-.-+|.++..+ +.|++|+.-.
T Consensus 5 a~~~~~la~~~~~~~----~~~-------~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~ 69 (78)
T PF13424_consen 5 ANAYNNLARVYRELG----RYD-------EALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL----GDYEEALEYY 69 (78)
T ss_dssp HHHHHHHHHHHHHTT-----HH-------HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT----THHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CHH-------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHH
Confidence 556666666666553 222 445555555433 1222 22333334444444 4689999889
Q ss_pred HHHhcc
Q 000910 167 ERALAI 172 (1229)
Q Consensus 167 ~RALaI 172 (1229)
++|+.|
T Consensus 70 ~~al~i 75 (78)
T PF13424_consen 70 QKALDI 75 (78)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 888876
No 159
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=33.31 E-value=4.6e+02 Score=32.53 Aligned_cols=123 Identities=19% Similarity=0.140 Sum_probs=78.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHH
Q 000910 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1229)
Q Consensus 66 ~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~ 145 (1229)
...++|+.+.||++++---+.|--+.+ .+.+...-+..+-|..+-|.+ -..|++.+.+|..|.|+-+--|..-
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~--~aeR~rAvLLtAkA~s~ldad-----p~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKD--VAERSRAVLLTAKAMSLLDAD-----PASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHhhcCCccchHHHHH
Confidence 356789999999888876666633331 233333323222221111221 2479999999999999999999999
Q ss_pred HHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccch-hhhhhhhhhcHHHHHHHHHH
Q 000910 146 ANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL-QDESQQKILTADARIAHVQS 203 (1229)
Q Consensus 146 A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l-~~~~q~~~tt~~~Ri~~~r~ 203 (1229)
|++||.=++- .|+-.-.+.+- -.+|-+..- .|-....+-|+-+|++..+.
T Consensus 270 Aralf~d~~~----rKg~~ilE~aW----K~ePHP~ia~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 270 ARALFRDGNL----RKGSKILETAW----KAEPHPDIALLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHhccch----hhhhhHHHHHH----hcCCChHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999987543 33333333333 345555533 37777788899999877654
No 160
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=33.24 E-value=17 Score=37.68 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=12.8
Q ss_pred eecCcCccccCChh
Q 000910 389 WVCCRCNEKFADSE 402 (1229)
Q Consensus 389 WiCp~CskKF~Dt~ 402 (1229)
++||.||+||.|..
T Consensus 10 r~Cp~cg~kFYDLn 23 (129)
T TIGR02300 10 RICPNTGSKFYDLN 23 (129)
T ss_pred ccCCCcCccccccC
Confidence 58999999999986
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=32.58 E-value=74 Score=28.86 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHh
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA 108 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A 108 (1229)
-|.-+++.|++.+|+..++. ....|.. +-++.+-|..++++-
T Consensus 31 la~~~~~~~~y~~A~~~~~~-~~~~~~~---~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK-LKLDPSN---PDIHYLLARCLLKLG 72 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC-HTHHHCH---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHH-hCCCCCC---HHHHHHHHHHHHHhC
Confidence 37789999999999999988 4444555 677777798888775
No 162
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.40 E-value=6.5e+02 Score=32.05 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhh
Q 000910 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~L 134 (1229)
..+-.-+-.+..++|.+...++++.-++.+.+.|+. +=|..+-|.|... +.-...|+..|..|.+|
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~---~Evy~~fAeiLtD-----------qqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC---PEVYNLFAEILTD-----------QQQFDKAVKQYDKAIEL 491 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---chHHHHHHHHHhh-----------HHhHHHHHHHHHHHHhh
Confidence 334444555566666677777777777777777776 4444444433322 22345799999999999
Q ss_pred CCC----hhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 135 SPH----SVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 135 sPn----cVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
.|. -|-++...-.+++.+- -.++.-.|+.=|..|+.+.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD 533 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC
Confidence 999 3455555555555552 4457788888899999874
No 163
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=31.47 E-value=1.7e+02 Score=38.21 Aligned_cols=80 Identities=26% Similarity=0.171 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
-+|.-...-|+.++|..-+.|...-.|-+ +-+.+..|.++.... -+.-|.++|--|..+.|+.+.+
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~---~~~~~~~G~~~~~~~-----------~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLS---ASVYYLRGLLLEVKG-----------QLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhh---HHHHHHhhHHHHHHH-----------hhHHHHHHHHHHHhcCCCCcHH
Confidence 45566667778888988888888777888 899999999887553 2357889999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 000910 142 AHFYANLLYEAAND 155 (1229)
Q Consensus 142 A~f~A~lL~ela~~ 155 (1229)
-+.+|.+|.+.|+.
T Consensus 721 ~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 721 MTALAELLLELGSP 734 (799)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999999855
No 164
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=31.46 E-value=78 Score=23.55 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=23.8
Q ss_pred HHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 95 LIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 95 lvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
-+++..|.+++..-. ...|+.+|.+|..+.|+
T Consensus 2 ~~~~~lg~~~~~~~~-----------~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN-----------YEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHCcC
Confidence 356667777776532 35799999999999997
No 165
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.99 E-value=1.4e+02 Score=28.73 Aligned_cols=44 Identities=27% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCC
Q 000910 120 HLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENP 175 (1229)
Q Consensus 120 hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP 175 (1229)
|...|-++..+|+...-. .+-+.| ...|+++.++..+|++|+.|
T Consensus 4 ~~~~A~~~I~kaL~~dE~----------g~~e~A--l~~Y~~gi~~l~eg~ai~~~ 47 (79)
T cd02679 4 YYKQAFEEISKALRADEW----------GDKEQA--LAHYRKGLRELEEGIAVPVP 47 (79)
T ss_pred HHHHHHHHHHHHhhhhhc----------CCHHHH--HHHHHHHHHHHHHHcCCCCC
Confidence 556677777777766511 000111 12799999999999999888
No 166
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=30.88 E-value=2.8e+02 Score=33.62 Aligned_cols=82 Identities=21% Similarity=0.351 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHH
Q 000910 70 RGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLL 149 (1229)
Q Consensus 70 rGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL 149 (1229)
.|++..|+.+.++|...+|+- +.++ ..++. . .|.. ..|+..+.++....|++.++=...|.-|
T Consensus 182 t~~~~~ai~lle~L~~~~pev---~~~L---A~v~l----~-~~~E------~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV---AVLL---ARVYL----L-MNEE------VEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH---HHHH---HHHHH----h-cCcH------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 357899999999999999874 2210 11111 1 2222 2678888888899999977777777766
Q ss_pred HHHhhcCccHHHHHHHHHHHhcc
Q 000910 150 YEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 150 ~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
+.- +.|+.|+.-|++|..+
T Consensus 245 l~k----~~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 245 LSK----KKYELALEIAKKAVEL 263 (395)
T ss_pred Hhc----CCHHHHHHHHHHHHHh
Confidence 665 4789999999999997
No 167
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=30.72 E-value=57 Score=35.38 Aligned_cols=56 Identities=27% Similarity=0.192 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccch
Q 000910 124 AIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESL 183 (1229)
Q Consensus 124 Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l 183 (1229)
|+.+|.+|..|.|+.=..-+=+|.+.... +++=.|+=.+.|||.+..|...|..|+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~----~~~l~avy~y~Rsl~~~~Pf~~A~~NL 56 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ----GDDLDAVYYYIRSLAVRIPFPSARENL 56 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT----T-HHHHHHHHHHHHSSSB--HHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc----cchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 68899999999999977777777665554 345667889999999999997777877
No 168
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=30.58 E-value=1.2e+02 Score=36.60 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=46.1
Q ss_pred HHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 97 HRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 97 H~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
+--+|.-|+++.. ...|++||+++..+.|.-.++-.-.|+++|.+ +.|--|+..|.-|+++
T Consensus 100 iKE~GN~yFKQgK-----------y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~----K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 100 IKERGNTYFKQGK-----------YEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ----KSFAQAEEDCEAAIAL 160 (536)
T ss_pred HHHhhhhhhhccc-----------hhHHHHHhhhhhccCCCCccchhhHHHHHHHH----HHHHHHHHhHHHHHHh
Confidence 4556777776653 35799999999999996566666788888887 4456677779888885
No 169
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=29.73 E-value=3.2e+02 Score=31.46 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCc
Q 000910 122 KNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 122 ~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
..|.-.|.+-...+|.++.+-...|.+.+.+ +.|++|..-...||.. .|.||
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~----~~~~eAe~~L~~al~~-~~~~~ 235 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQL----GHYEEAEELLEEALEK-DPNDP 235 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHC----T-HHHHHHHHHHHCCC--CCHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHh-ccCCH
Confidence 3677788888888889988888888888887 4699999989999874 34443
No 170
>PF12907 zf-met2: Zinc-binding
Probab=29.63 E-value=12 Score=31.74 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=20.9
Q ss_pred ecCcCccccCCh---hHHHHHHHhhhccC
Q 000910 390 VCCRCNEKFADS---ESHMHHVVQQHMGN 415 (1229)
Q Consensus 390 iCp~CskKF~Dt---~Sl~~Hm~qkH~~~ 415 (1229)
+|.+|-+-|.-+ ..|.+|..+||.-.
T Consensus 3 ~C~iC~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 3 ICKICRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred CcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence 799998766655 55999999999863
No 171
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.34 E-value=13 Score=44.07 Aligned_cols=53 Identities=26% Similarity=0.544 Sum_probs=35.6
Q ss_pred HHHhhccCCHHhHcceeEeehhhHHHHHhhh-c----CchHHHHHH-------HHHHHHHhcCceeEeecC
Q 000910 334 VRSYWNSMSLEMKRELLKVKVCDIKAHSASL-K----DGLASDVLA-------EALAFAEENKTWRFWVCC 392 (1229)
Q Consensus 334 Vr~YW~SMt~E~Kr~FLsVrI~eLkshy~~v-~----d~~AadtLs-------EAL~FaKknkSWRFWiCp 392 (1229)
+.+||.+|.-|.....++-.|....+-|-.. . ..+...+|+ +|--|| +||||.
T Consensus 82 ~~sFw~tm~eEde~~~~t~kvn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~a------KYWIC~ 146 (353)
T PF15297_consen 82 VGSFWTTMAEEDEQRLFTEKVNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLA------KYWICL 146 (353)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHH------HHHHHH
Confidence 4699999999876666666666555544322 2 236667888 666677 699994
No 172
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=29.24 E-value=1.7e+02 Score=37.60 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=68.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHH
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVei 141 (1229)
.++++++.-+-+.+-|+.++-+..++|.- +--+-+-|.....+... ..|.++++.+.+-.|.|-.
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eH---geslAmkGL~L~~lg~~-----------~ea~~~vr~glr~d~~S~v- 76 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKFPEH---GESLAMKGLTLNCLGKK-----------EEAYELVRLGLRNDLKSHV- 76 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCcc---chhHHhccchhhcccch-----------HHHHHHHHHHhccCcccch-
Confidence 57899999999999999999999888764 33345667766656532 3677888888887777744
Q ss_pred HHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 142 AHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 142 A~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
|=++|=.+-+..+.|.+|..=.+.||.|+
T Consensus 77 ---CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 77 ---CWHVLGLLQRSDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred ---hHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 44444344444578999998888899984
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=28.90 E-value=2.7e+02 Score=37.75 Aligned_cols=101 Identities=26% Similarity=0.236 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCC
Q 000910 58 KLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPH 137 (1229)
Q Consensus 58 RkEae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPn 137 (1229)
+-..-.|.+.++..++.+||+.-|+...-.|+. ..+|..-|-....+ ..| +-.|-+.|-.|+.|.||
T Consensus 3 K~aLK~Ak~al~nk~YeealEqskkvLk~dpdN---YnA~vFLGvAl~sl---~q~-------le~A~ehYv~AaKldpd 69 (1238)
T KOG1127|consen 3 KTALKSAKDALRNKEYEEALEQSKKVLKEDPDN---YNAQVFLGVALWSL---GQD-------LEKAAEHYVLAAKLDPD 69 (1238)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHhc---cCC-------HHHHHHHHHHHHhcChh
Confidence 334456778889999999999999999889998 66666666443322 223 44889999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 138 SVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 138 cVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
-+--.-+++++ |+--+|.-.|.++-.-|.|++-|
T Consensus 70 nlLAWkGL~nL-ye~~~dIl~ld~~~~~yq~~~l~ 103 (1238)
T KOG1127|consen 70 NLLAWKGLGNL-YERYNDILDLDRAAKCYQRAVLI 103 (1238)
T ss_pred hhHHHHHHHHH-HHccchhhhhhHhHHHHHHHHHh
Confidence 99877777764 45555666788888788888877
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=28.85 E-value=3.4e+02 Score=27.61 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCc
Q 000910 57 IKLECERALTALRRGNHKKALRLMKELSSRHENS 90 (1229)
Q Consensus 57 IRkEae~AL~~~rrGnH~KAL~rakdLasrHp~S 90 (1229)
.+.-+.-+-.+-.-|++++|++.+++....||++
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 3445556677778899999999999999999984
No 175
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=28.55 E-value=1.7e+02 Score=26.05 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHh
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA 108 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A 108 (1229)
|+..++-|++.+|++-++.+....|+. ..+..+...|.-+.+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N---~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDN---RQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHHh
Confidence 678899999999999999999999998 666666666655443
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=28.23 E-value=6e+02 Score=28.64 Aligned_cols=98 Identities=22% Similarity=0.212 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc--cCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCC--
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRH--ENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSP-- 136 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrH--p~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsP-- 136 (1229)
.+.|-.++++++..+|+...+..+..+ .|+ + ...+.++.++|...++.- .-...|+++|.+|+.+.-
T Consensus 78 ~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~---~---~~aA~~~~~lA~~ye~~~---~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 78 YEEAANCYKKGDPDEAIECYEKAIEIYREAGR---F---SQAAKCLKELAEIYEEQL---GDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT----H---HHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCc---H---HHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHC
Confidence 345566777778888877777766443 232 1 333555555555443320 013456666666666531
Q ss_pred Chh----HHHHHHHHHHHHHhhcCccHHHHHHHHHHHhc
Q 000910 137 HSV----EFAHFYANLLYEAANDGKEYEEVVQECERALA 171 (1229)
Q Consensus 137 ncV----eiA~f~A~lL~ela~~~~~YeeAv~Ec~RALa 171 (1229)
+.. +...-.|.++..+ +.|++|..-..+...
T Consensus 149 ~~~~~a~~~~~~~A~l~~~l----~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 149 GSPHSAAECLLKAADLYARL----GRYEEAIEIYEEVAK 183 (282)
T ss_dssp T-HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHH
Confidence 111 2223334444444 478999877776654
No 177
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.07 E-value=62 Score=41.32 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhCCC
Q 000910 124 AIESAKKAAELSPH 137 (1229)
Q Consensus 124 Ald~~s~A~~LsPn 137 (1229)
|++||.+|.+|.|+
T Consensus 339 a~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 339 AVDCYNKALRLCPN 352 (966)
T ss_pred HHHHHHHHHHhCCc
Confidence 45555555555544
No 178
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.05 E-value=3.1e+02 Score=30.36 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=51.9
Q ss_pred HhhhhHHHHh---hhcCChhHHHHHHHHHHHHHHHHhhhCCChh------HHHHHHHHHHHHHhhcCccHHHHHHHHHHH
Q 000910 99 VQGTVCVKVA---SIIDDLNSKQRHLKNAIESAKKAAELSPHSV------EFAHFYANLLYEAANDGKEYEEVVQECERA 169 (1229)
Q Consensus 99 lqG~v~~~~A---~~~dd~~~K~~hL~~Ald~~s~A~~LsPncV------eiA~f~A~lL~ela~~~~~YeeAv~Ec~RA 169 (1229)
..|.++.++| +...|.+.-..||..|++.|.+|..-...-+ .+.-+.|.+-+. .+.|++|.+-..|.
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~v 191 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence 6778888876 6777788889999999999999998775522 233333444444 45789998888887
Q ss_pred hccC
Q 000910 170 LAIE 173 (1229)
Q Consensus 170 LaI~ 173 (1229)
++-.
T Consensus 192 i~~~ 195 (214)
T PF09986_consen 192 IGSK 195 (214)
T ss_pred HcCC
Confidence 7753
No 179
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=28.02 E-value=3e+02 Score=34.52 Aligned_cols=88 Identities=19% Similarity=0.127 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhH
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVe 140 (1229)
.=-|.-+.+.|++.+||..+++.+..-|-. +-+|.+-|.|+-.+.. +..|.+++..|..|.+.-==
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~-----------~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGD-----------LKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhCChhhHH
Confidence 344677788999999999999999666887 8888999999887753 35889999999999988888
Q ss_pred HHHHHHHHHHHHhhcCccHHHHHHHH
Q 000910 141 FAHFYANLLYEAANDGKEYEEVVQEC 166 (1229)
Q Consensus 141 iA~f~A~lL~ela~~~~~YeeAv~Ec 166 (1229)
|..=+|.-++.++ .+++|..-|
T Consensus 264 iNsK~aKy~LRa~----~~e~A~~~~ 285 (517)
T PF12569_consen 264 INSKCAKYLLRAG----RIEEAEKTA 285 (517)
T ss_pred HHHHHHHHHHHCC----CHHHHHHHH
Confidence 8899999999884 567776544
No 180
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=27.68 E-value=37 Score=29.48 Aligned_cols=18 Identities=22% Similarity=0.595 Sum_probs=13.2
Q ss_pred cCcC-ccc---cCChhHHHHHHH
Q 000910 391 CCRC-NEK---FADSESHMHHVV 409 (1229)
Q Consensus 391 Cp~C-skK---F~Dt~Sl~~Hm~ 409 (1229)
||+| ++| |. ..+|++|-.
T Consensus 1 CP~C~~kkk~~Y~-~~~LlqHA~ 22 (43)
T PF03470_consen 1 CPFCPGKKKQDYK-YRELLQHAS 22 (43)
T ss_pred CCCCCCCCCccee-hhHHHHHHH
Confidence 9999 443 55 788888865
No 181
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.56 E-value=1e+03 Score=29.32 Aligned_cols=101 Identities=24% Similarity=0.233 Sum_probs=69.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhccC--chh---hHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChh
Q 000910 65 LTALRRGNHKKALRLMKELSSRHEN--SAY---VALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1229)
Q Consensus 65 L~~~rrGnH~KAL~rakdLasrHp~--S~~---~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncV 139 (1229)
=.+|++|++.-|..+-+..++--+. +.. -..+.-+-=.+|..+|. .-.|..+-+.|+.+..++..+-|+.+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~----c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAA----CYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHH----HHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 4679999999998776654432221 100 01111111123333332 24566677799999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 140 EFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 140 eiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
.==.-.++++..++ +|+.|..-.++|+.+.
T Consensus 292 KALyRrG~A~l~~~----e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 292 KALYRRGQALLALG----EYDLARDDFQKALKLE 321 (397)
T ss_pred hHHHHHHHHHHhhc----cHHHHHHHHHHHHHhC
Confidence 87777899999885 7999999999999973
No 182
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.09 E-value=9.4e+02 Score=27.21 Aligned_cols=128 Identities=17% Similarity=0.180 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhh--CCCh
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL--SPHS 138 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~L--sPnc 138 (1229)
--+||++-+.|..++||+-.++|....-++ |+.|+..-.|++..+= .|.+ .||.+|.+...- .|.-
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~k----gdta-------~AV~aFdeia~dt~~P~~ 129 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQK----GDTA-------AAVAAFDEIAADTSIPQI 129 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhc----ccHH-------HHHHHHHHHhccCCCcch
Confidence 457899999999999999999999665444 4455554456654422 2333 688888887654 4555
Q ss_pred h-HHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccchhhhhhhhhhcHHHHHHHHHHHHHH
Q 000910 139 V-EFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQKILTADARIAHVQSELRS 207 (1229)
Q Consensus 139 V-eiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l~~~~q~~~tt~~~Ri~~~r~eL~s 207 (1229)
. ++|++.|-.|+.= .+.|+.+.... =.+..+..|-.|+..+-.... .-..++.++.++.+..
T Consensus 130 ~rd~ARlraa~lLvD---~gsy~dV~srv---epLa~d~n~mR~sArEALglA-a~kagd~a~A~~~F~q 192 (221)
T COG4649 130 GRDLARLRAAYLLVD---NGSYDDVSSRV---EPLAGDGNPMRHSAREALGLA-AYKAGDFAKAKSWFVQ 192 (221)
T ss_pred hhHHHHHHHHHHHhc---cccHHHHHHHh---hhccCCCChhHHHHHHHHhHH-HHhccchHHHHHHHHH
Confidence 5 7788877655432 45799986544 233446666666543222222 1233344555544433
No 183
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=25.94 E-value=2e+02 Score=31.13 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccCch
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSA 91 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakdLasrHp~S~ 91 (1229)
.-.+.-.+++|+.++|+++++++..+.|+..
T Consensus 48 ~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 48 LFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 4456788999999999999999999999883
No 184
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=25.51 E-value=42 Score=36.24 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=23.1
Q ss_pred eEeecCcCccccCChhHHHHHHHhhhccCCCc
Q 000910 387 RFWVCCRCNEKFADSESHMHHVVQQHMGNLLP 418 (1229)
Q Consensus 387 RFWiCp~CskKF~Dt~Sl~~Hm~qkH~~~l~P 418 (1229)
.||.||.||+.| =..|||.+|.+.=..++.|
T Consensus 129 ~f~~C~~CgkiY-W~GsHw~~m~~~~~~~~~~ 159 (165)
T COG1656 129 EFYRCPKCGKIY-WKGSHWRRMVERIVENLRP 159 (165)
T ss_pred ceeECCCCcccc-cCchHHHHHHHHHHHHhcc
Confidence 599999999876 4578899998644444443
No 185
>PHA00733 hypothetical protein
Probab=25.48 E-value=45 Score=34.16 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.4
Q ss_pred eecCcCccccCChhHHHHHHHh
Q 000910 389 WVCCRCNEKFADSESHMHHVVQ 410 (1229)
Q Consensus 389 WiCp~CskKF~Dt~Sl~~Hm~q 410 (1229)
|.|+.|++.|.....|..|+..
T Consensus 74 y~C~~Cgk~Fss~s~L~~H~r~ 95 (128)
T PHA00733 74 YVCPLCLMPFSSSVSLKQHIRY 95 (128)
T ss_pred ccCCCCCCcCCCHHHHHHHHhc
Confidence 5899999999999999999984
No 186
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=25.43 E-value=3.4e+02 Score=35.58 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=60.6
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Q 000910 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1229)
Q Consensus 69 rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~l 148 (1229)
+++++.+|.+..+..-.-+|.. .-..+--|.+-.+ ..-...|+++|.+.+.|.||--+..--++-+
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq---~~~wf~~G~~ALq-----------lek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQ---LGTWFGLGCAALQ-----------LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccc---hhHHHhccHHHHH-----------HhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 3455556665555555555555 3344444444333 3334689999999999999999999999999
Q ss_pred HHHHhhcCccHHHHHHHHHHHhccC
Q 000910 149 LYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 149 L~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
++.+.+. ++|-+..++||.-.
T Consensus 563 yi~~~~k----~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 563 YIRLKKK----KRAFRKLKEALKCN 583 (777)
T ss_pred HHHHhhh----HHHHHHHHHHhhcC
Confidence 9999654 66777778888763
No 187
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=24.67 E-value=27 Score=28.50 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=11.4
Q ss_pred EeecCcCccccCCh
Q 000910 388 FWVCCRCNEKFADS 401 (1229)
Q Consensus 388 FWiCp~CskKF~Dt 401 (1229)
-|.|+.||+.|.+.
T Consensus 32 ~~~C~~CGE~~~~~ 45 (46)
T TIGR03831 32 ALVCPQCGEEYLDA 45 (46)
T ss_pred ccccccCCCEeeCC
Confidence 48899999988764
No 188
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=24.18 E-value=35 Score=41.61 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=25.6
Q ss_pred eecCcCccccCChhHHHHHHHhhhccCC
Q 000910 389 WVCCRCNEKFADSESHMHHVVQQHMGNL 416 (1229)
Q Consensus 389 WiCp~CskKF~Dt~Sl~~Hm~qkH~~~l 416 (1229)
.+||+|.+.|.+.+.|-.|+..+|.+.-
T Consensus 16 flCPiC~~dl~~~~~L~~H~d~eH~~ed 43 (505)
T KOG1842|consen 16 FLCPICLLDLPNLSALNDHLDVEHFEED 43 (505)
T ss_pred ccCchHhhhhhhHHHHHHHHhhhccccc
Confidence 4799999999999999999999998754
No 189
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=24.09 E-value=1.7e+02 Score=34.14 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=25.9
Q ss_pred CCCCchhhhHHHHHHHHHHHhcCCHHHHHHHHH
Q 000910 49 GGASTYGAIKLECERALTALRRGNHKKALRLMK 81 (1229)
Q Consensus 49 ~~~sd~aaIRkEae~AL~~~rrGnH~KAL~rak 81 (1229)
+++-|..++-.-|.+|..+-+..|-.+|+.+|+
T Consensus 26 ~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k 58 (276)
T PF12037_consen 26 ASGFDPEALERAAKALRELNSSPHAKKAFELMK 58 (276)
T ss_pred cCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHH
Confidence 446898999988888888888777777886665
No 190
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=22.92 E-value=5.1e+02 Score=29.88 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhh
Q 000910 55 GAIKLECERALTALRRG-NHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAE 133 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrG-nH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~ 133 (1229)
+.|-.=|++-+.+..-| +..+|.-+.+|++.++|.+ +.+++.++..+..+. +.-.|.+.+.+|..
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---~~~lng~A~~~l~~~-----------~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---PKLLNGLAVCHLQLG-----------HYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---HHHHHHHHHHHHHCT------------HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHH
Confidence 44444444444444433 3566777777777666666 566555555555432 45678888999999
Q ss_pred hCCChhHHHHHHHHH
Q 000910 134 LSPHSVEFAHFYANL 148 (1229)
Q Consensus 134 LsPncVeiA~f~A~l 148 (1229)
..|+..+ ++|++
T Consensus 230 ~~~~~~d---~LaNl 241 (290)
T PF04733_consen 230 KDPNDPD---TLANL 241 (290)
T ss_dssp C-CCHHH---HHHHH
T ss_pred hccCCHH---HHHHH
Confidence 9999866 45553
No 191
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.70 E-value=3.9e+02 Score=34.15 Aligned_cols=95 Identities=21% Similarity=0.222 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHH-----h-----------hhcCC--------------hhHHHHH
Q 000910 71 GNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKV-----A-----------SIIDD--------------LNSKQRH 120 (1229)
Q Consensus 71 GnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~-----A-----------~~~dd--------------~~~K~~h 120 (1229)
+|..-|=+-+...-+..|++ ++|++--|-|-+.. | ....+ ...|..-
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~D---plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSD---PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCc---chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 34444555555566777999 89999888776632 1 00011 1225556
Q ss_pred HHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhcc
Q 000910 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 121 L~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
...|+.+|++|..|+|....+=+..|-....+++ .++|..-...||+|
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn----ld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN----LDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC----hHHHHHHHHHHHhc
Confidence 6779999999999999999988888887777765 47788889999998
No 192
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.60 E-value=7.2e+02 Score=31.48 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=75.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccC--------chhhHHHHHHhhh-hHHHH-hh-----------hcCCh-hHHHHH
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHEN--------SAYVALIHRVQGT-VCVKV-AS-----------IIDDL-NSKQRH 120 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakdLasrHp~--------S~~~alvH~lqG~-v~~~~-A~-----------~~dd~-~~K~~h 120 (1229)
.|.-...+.+|++|+.+-+|+...-|. |. +-.|..-+.. .+.+. +. .+.|= .+|. -
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN-~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~-e 345 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN-VLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRS-E 345 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH-HHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHH-h
Confidence 345566678999999999999855454 20 0111111110 11110 11 22231 1233 3
Q ss_pred HHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCccccchhhhhhh
Q 000910 121 LKNAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKESLQDESQQ 189 (1229)
Q Consensus 121 L~~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~~l~~~~q~ 189 (1229)
+.-|+.+|++|..|.|+..--=++.++-+.|+-+- ..|+.-.+||+.| +|.....=|+..|
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt----~AAi~sYRrAvdi----~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT----HAAIESYRRAVDI----NPRDYRAWYGLGQ 406 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc----HHHHHHHHHHHhc----CchhHHHHhhhhH
Confidence 45699999999999999999999999999999654 5678788999987 5666765565544
No 193
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.27 E-value=3.6e+02 Score=33.55 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=62.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHH
Q 000910 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFY 145 (1229)
Q Consensus 66 ~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~ 145 (1229)
-+|.+.++-.||-.+++.|...|++ -.++.+-|.+..++-+. ..|+=+|+.|-.|+|--+++-.++
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~---~~alilKG~lL~~~~R~-----------~~A~IaFR~Aq~Lap~rL~~Y~GL 374 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRN---HEALILKGRLLIALERH-----------TQAVIAFRTAQMLAPYRLEIYRGL 374 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCccc---chHHHhccHHHHhccch-----------HHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555666777777777777777777 56666777766655432 367888999999999999988888
Q ss_pred HHHHHHHhhcCccHHHHHHHHHHHhc
Q 000910 146 ANLLYEAANDGKEYEEVVQECERALA 171 (1229)
Q Consensus 146 A~lL~ela~~~~~YeeAv~Ec~RALa 171 (1229)
-+.++.- +..+||..-+..++.
T Consensus 375 ~hsYLA~----~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 375 FHSYLAQ----KRFKEANALANWTIR 396 (564)
T ss_pred HHHHHhh----chHHHHHHHHHHHHH
Confidence 7776655 346777766655554
No 194
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=21.74 E-value=2.9e+02 Score=37.09 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=67.5
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhh----HHHHHH------hhhhHHHHhhhcC---ChhHHHHHHHHHHHHHHHHhhhC
Q 000910 69 RRGNHKKALRLMKELSSRHENSAYV----ALIHRV------QGTVCVKVASIID---DLNSKQRHLKNAIESAKKAAELS 135 (1229)
Q Consensus 69 rrGnH~KAL~rakdLasrHp~S~~~----alvH~l------qG~v~~~~A~~~d---d~~~K~~hL~~Ald~~s~A~~Ls 135 (1229)
+++..+||+.+-.....-||..-++ +.|+-. +++||.++...+. |--+=..|.--...=|+.|+...
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 4456788998888888777664332 344433 3478877755444 32223445444444444444444
Q ss_pred C---------ChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcc
Q 000910 136 P---------HSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPA 179 (1229)
Q Consensus 136 P---------ncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA 179 (1229)
- |..++-+.+|+++|+.+ .|++|..-..+|+.. .|.||.
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~----~~~eak~~ll~a~~~-~p~~~~ 751 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAG----KLQEAKEALLKARHL-APSNTS 751 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHh-CCccch
Confidence 4 45577789999999995 488888888888775 477765
No 195
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=21.67 E-value=3.7e+02 Score=33.04 Aligned_cols=79 Identities=25% Similarity=0.241 Sum_probs=54.7
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Q 000910 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAHFYANL 148 (1229)
Q Consensus 69 rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA~f~A~l 148 (1229)
..++-..|-+++++...+||+| ++.+...|.+..... + +..|+++|.+|......=-+ +.+..
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s---~lfl~~~gR~~~~~g----~-------~~~Ai~~~~~a~~~q~~~~Q---l~~l~ 307 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNS---ALFLFFEGRLERLKG----N-------LEEAIESFERAIESQSEWKQ---LHHLC 307 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhc----C-------HHHHHHHHHHhccchhhHHh---HHHHH
Confidence 3456778999999999999999 899999999887543 2 35888888888754433223 34444
Q ss_pred HHHHhhc---CccHHHHHH
Q 000910 149 LYEAAND---GKEYEEVVQ 164 (1229)
Q Consensus 149 L~ela~~---~~~YeeAv~ 164 (1229)
+|++|-- ...|++|..
T Consensus 308 ~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHchHHHHHH
Confidence 6666432 226888753
No 196
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.36 E-value=9.6e+02 Score=28.35 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=75.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHh----------h-hcCChhHHHHHHH------------
Q 000910 66 TALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVA----------S-IIDDLNSKQRHLK------------ 122 (1229)
Q Consensus 66 ~~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A----------~-~~dd~~~K~~hL~------------ 122 (1229)
.++-.|..+=|..-++.|-.+.|+| ..|-.+-|..+-+.+ + .-|||..-..|-+
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S---~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGS---KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 3344566777888888888888999 566666665544332 1 3344443333322
Q ss_pred HHHHHHHHHhhhCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHhccCCCCCcccc
Q 000910 123 NAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 123 ~Ald~~s~A~~LsPncVeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
.|+.-.-.=...+|+-.|-=+-+|.+++.. ++|++|. -|..=+-..+|+.|.-+
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~----~~f~kA~-fClEE~ll~~P~n~l~f 191 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSE----GDFEKAA-FCLEELLLIQPFNPLYF 191 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhH----hHHHHHH-HHHHHHHHcCCCcHHHH
Confidence 244555555678888888889999999998 4799984 88888888999999877
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=21.36 E-value=1e+02 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhCCChhHHHHHHHH
Q 000910 122 KNAIESAKKAAELSPHSVEFAHFYAN 147 (1229)
Q Consensus 122 ~~Ald~~s~A~~LsPncVeiA~f~A~ 147 (1229)
..|+.+|.++..+.|+..+.-..+|+
T Consensus 18 ~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 18 DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 48999999999999999988777765
No 198
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=21.12 E-value=67 Score=40.88 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=60.1
Q ss_pred ccCCHHhHcceeEeehhhHHHHHhhhc---CchHH-HHHHHHHHHHHhcCceeEeecCcCccccCC----hhHHHHHHHh
Q 000910 339 NSMSLEMKRELLKVKVCDIKAHSASLK---DGLAS-DVLAEALAFAEENKTWRFWVCCRCNEKFAD----SESHMHHVVQ 410 (1229)
Q Consensus 339 ~SMt~E~Kr~FLsVrI~eLkshy~~v~---d~~Aa-dtLsEAL~FaKknkSWRFWiCp~CskKF~D----t~Sl~~Hm~q 410 (1229)
..++.|..-.++.|++.-=..+-.-.+ .+.-+ -=.=||+.|-.-|..===|+||+|.+.+.- .+.++.++.+
T Consensus 292 ~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 292 AGPDSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred cCCcccceeccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 455667777788888765544432211 00000 013367777777877778999999875542 4667777777
Q ss_pred hhccCCCchhhhccCccccHHHHhhhcCCCCccccHHHHH
Q 000910 411 QHMGNLLPKMQAVLPQSVDNEWNEMIDNCSWKPLDIVAAV 450 (1229)
Q Consensus 411 kH~~~l~PklqsvLPq~ID~~W~~mI~~g~WkPvD~~AA~ 450 (1229)
.+.++.- +-++. ..|+|+|+...++.
T Consensus 372 ~~~~~~~-------ev~~~-------~dGsw~pi~~~~~~ 397 (636)
T KOG2169|consen 372 SCQANVE-------EVEVS-------EDGSWKPIPEEAEA 397 (636)
T ss_pred hccCCCc-------ceEec-------CCCceecCcccccc
Confidence 7665522 22222 23999999998874
No 199
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=20.85 E-value=50 Score=39.28 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.9
Q ss_pred ecCcCccccCChhHHHHHHHhhhccCCC
Q 000910 390 VCCRCNEKFADSESHMHHVVQQHMGNLL 417 (1229)
Q Consensus 390 iCp~CskKF~Dt~Sl~~Hm~qkH~~~l~ 417 (1229)
+|-+|+..|.|-++|..||+.+|..-..
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~HE~ChI 249 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRHEACHI 249 (493)
T ss_pred hhhhccceecChHHHHHHHHhhhhhhhh
Confidence 6889999999999999999999976443
No 200
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=20.70 E-value=3.3e+02 Score=30.46 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=53.4
Q ss_pred hcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCC--h----hHHHHHHHHHHHHHHHHhhhCCCh
Q 000910 69 RRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDD--L----NSKQRHLKNAIESAKKAAELSPHS 138 (1229)
Q Consensus 69 rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd--~----~~K~~hL~~Ald~~s~A~~LsPnc 138 (1229)
..+.+..++......+.-+|.+ .-+++--|..+..+...... . .....|+..|+.+|-+|+.+.|+.
T Consensus 270 ~~~~~~~~~~~~~~a~~~~~~~---~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 270 SSESSDEILKYYKEATKLDPSW---EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred ccccHHHHHHHHHHHHHhChhH---HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 4478888999999999889888 67788888888887532221 1 367889999999999999999983
No 201
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.58 E-value=84 Score=42.14 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=50.5
Q ss_pred CCceeeeeccCCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHhhhhhhchhcc
Q 000910 695 ADALLTWIFAGPSSGEHLTTWMHSKEEKTHQGMEILQTLEKEFYHLQSLCERKCEHLSYEEALQALEDLCLEEGKKRETV 774 (1229)
Q Consensus 695 gD~~lSWlf~~~si~eql~sw~~~re~~~~~~~~VL~~le~ef~~L~~~cekK~~~L~Ye~aL~~vE~lCleE~~rR~~~ 774 (1229)
.|+++|||++-+.. -|+++|--..-.+|.++.+|=.---+|.+.-++.-.+| =.|+.+.|-+.
T Consensus 198 md~~is~LtamSdS-----qvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQl------------eaEr~k~r~~r 260 (1048)
T KOG2011|consen 198 MDDLISWLTAMSDS-----QVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQL------------EAERNKSRGNR 260 (1048)
T ss_pred HHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------------HHHhcccccch
Confidence 36799999985542 46788866666667666665555555555444444443 35677777755
Q ss_pred cccchhhHHHHHHHHHHHHhhhcC
Q 000910 775 AEFGHRSYESVLRKRREELLESEN 798 (1229)
Q Consensus 775 ~e~~~~~YeslLr~r~eel~~~~~ 798 (1229)
. ++++||.+| .|+.+.+.
T Consensus 261 a-----rle~Ll~~r-~etqe~~d 278 (1048)
T KOG2011|consen 261 A-----RLESLLMLR-KETQEQQD 278 (1048)
T ss_pred H-----HHHHHHHHH-HHHHHHHH
Confidence 3 788888544 44445554
No 202
>PRK10941 hypothetical protein; Provisional
Probab=20.54 E-value=3.1e+02 Score=31.59 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhccCchhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHHHHHHHhhhCCChhHHH
Q 000910 67 ALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1229)
Q Consensus 67 ~~rrGnH~KAL~rakdLasrHp~S~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald~~s~A~~LsPncVeiA 142 (1229)
+.+.+++.+||+.++-+..-.|++ +.-++-.|.+++++.- ...|+.=+..-+..+|+.....
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~P~d---p~e~RDRGll~~qL~c-----------~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFDPED---PYEIRDRGLIYAQLDC-----------EHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHHhCCCchhHH
Confidence 468899999999999999999999 8889999999998742 2466677777777888776543
No 203
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=20.41 E-value=9.7e+02 Score=30.30 Aligned_cols=107 Identities=21% Similarity=0.169 Sum_probs=56.3
Q ss_pred CchhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----ccCc-hhhHHHHHHhhhhHHHHhhhcCChhHHHHHHHHHHH
Q 000910 52 STYGAIKLECERALTALRRGNHKKALRLMKELSSR----HENS-AYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIE 126 (1229)
Q Consensus 52 sd~aaIRkEae~AL~~~rrGnH~KAL~rakdLasr----Hp~S-~~~alvH~lqG~v~~~~A~~~dd~~~K~~hL~~Ald 126 (1229)
.+...++-=.--|..+..+|++.+|....+..... ++.. .+|+.....-|.++..+.. . .-|+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k-----~------~eAv~ 262 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK-----Y------DEAVN 262 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc-----H------HHHHH
Confidence 34344444444667888999999999877766654 1100 1122222222333333321 1 23444
Q ss_pred HHHHHhhhC-----CChhHHHHHH---HHHHHHHhhcCccHHHHHHHHHHHhccC
Q 000910 127 SAKKAAELS-----PHSVEFAHFY---ANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 127 ~~s~A~~Ls-----PncVeiA~f~---A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
.|.+|.... ++....|.++ |.+++.. +.|.+|..-|+||+.|-
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~----GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ----GKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHHHH
Confidence 454444322 3333333333 3333333 36999999999999994
Done!