Query 000910
Match_columns 1229
No_of_seqs 74 out of 76
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 15:51:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000910.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_680-684//hhsearch_pdb/000910hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h6f_A Protein farnesyltransfe 1.0 1 1 45.1 10.8 98 63-178 103-200 (382)
2 2vgx_A Chaperone SYCD; alterna 1.0 1 1 44.1 13.5 107 55-180 19-125 (148)
3 4gco_A Protein STI-1; structur 1.0 1 1 42.6 11.7 99 61-178 17-115 (126)
4 1hxi_A PEX5, peroxisome target 1.0 1 1 42.4 11.7 95 60-172 20-114 (121)
5 2xcb_A PCRH, regulatory protei 1.0 1 1 42.3 14.0 108 55-181 16-123 (142)
6 3gyz_A Chaperone protein IPGC; 1.0 1 1 42.1 14.1 101 55-173 34-134 (151)
7 4gyw_A UDP-N-acetylglucosamine 1.0 1 1 40.7 13.7 98 62-178 14-111 (723)
8 3urz_A Uncharacterized protein 1.0 1 1 40.6 11.8 104 59-181 6-125 (208)
9 4ga2_A E3 SUMO-protein ligase 1.0 1 1 40.4 9.9 98 64-180 38-136 (150)
10 4gyw_A UDP-N-acetylglucosamine 1.0 1 1 40.2 11.2 97 63-178 49-145 (723)
No 1
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=1.00 E-value=1 Score=45.13 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=80.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999860998999999999998513831357999772135899852037814799999799999999963199726778
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~lqG~i~~~~A~~~ed~~~K~~hL~~Ale~~s~A~~LsPnsIeiA 142 (1229)
.+..+...|++.+|+......+..+|+. +.+++..|.++..+.. + +..|+.++.+|..+.|+...+-
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~P~~---~~a~~~~g~~l~~~g~---d-------~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELNAAN---YTVWHFRRVLLKSLQK---D-------LHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC---C-------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCC---C-------HHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999997798599999999999869327---9999999999998264---7-------9999999999998788789999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 889999999830386389999999998436799996
Q 000910 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 143 ~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
..++.++..++ .|++|..-+.+||.+. |.++
T Consensus 170 ~~~g~~~~~~g----~~~eAl~~~~kal~ld-P~~~ 200 (382)
T 2h6f_A 170 HHRRVLVEWLR----DPSQELEFIADILNQD-AKNY 200 (382)
T ss_dssp HHHHHHHHHHT----CCTTHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHCC----CHHHHHHHHHHHHHHC-CCCH
T ss_conf 99999999846----8899999999999858-5589
No 2
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=1.00 E-value=1 Score=44.09 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34699999999998609989999999999985138313579997721358998520378147999997999999999631
Q 000910 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~lqG~i~~~~A~~~ed~~~K~~hL~~Ale~~s~A~~L 134 (1229)
..+..-...+..++..|++.+|+.....++...|.. +.++..-|.++..+. +. ..|+.+|.+|..+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g----~~-------~~A~~~~~~al~l 84 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMG----QY-------DLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTT----CH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHH----HH-------HHHHHHHHHHHHC
T ss_conf 669999999999998588587999999999738621---899998999999983----08-------8999999999823
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9972677888999999983038638999999999843679999653
Q 000910 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAK 180 (1229)
Q Consensus 135 sPnsIeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~ 180 (1229)
.|+.......+|.+++.+ +.|++|...+.+++.+. |.+|.-
T Consensus 85 ~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~-p~~~~~ 125 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQX----GELAEAESGLFLAQELI-ANXPEF 125 (148)
T ss_dssp STTCTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHH-TTCGGG
T ss_pred CCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHC-CCCCCC
T ss_conf 888816899998999980----87888999999999878-577761
No 3
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=42.59 Aligned_cols=99 Identities=16% Similarity=0.271 Sum_probs=84.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999998609989999999999985138313579997721358998520378147999997999999999631997267
Q 000910 61 CERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVE 140 (1229)
Q Consensus 61 ae~AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~lqG~i~~~~A~~~ed~~~K~~hL~~Ale~~s~A~~LsPnsIe 140 (1229)
-++...+++.|++.+|+...++.+...|.+ +.++...|.++..+. +. ..|+.++.+|..+.|+.++
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~----~~-------~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLM----EF-------QRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTT----CH-------HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHC----CH-------HHHHHHHHHHHHHHHHHHH
T ss_conf 999999998599999999999998858998---999997745777633----29-------9999999999986120368
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78889999999830386389999999998436799996
Q 000910 141 FAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 141 iA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
.-..+|.+++.+ +.|++|...+++||.+. |.++
T Consensus 83 a~~~lg~~~~~~----~~~~~A~~~~~~al~l~-P~~~ 115 (126)
T 4gco_A 83 GYIRKAACLVAM----REWSKAQRAYEDALQVD-PSNE 115 (126)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHHHC-CCCH
T ss_conf 899999999887----98999999999999878-4999
No 4
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=42.38 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=83.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 99999999860998999999999998513831357999772135899852037814799999799999999963199726
Q 000910 60 ECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSV 139 (1229)
Q Consensus 60 Eae~AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~lqG~i~~~~A~~~ed~~~K~~hL~~Ale~~s~A~~LsPnsI 139 (1229)
....+..+++.|++.+|+...+..+...|++ +.++..-|.++.... +. ..|+.++.+|..+.|+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g----~~-------~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENE----KD-------GLAIIALNHARMLDPKDI 85 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTT----CH-------HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHHCCCCH
T ss_conf 9999999998699999999999999988898---999999999999859----99-------999999999998399999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 778889999999830386389999999998436
Q 000910 140 EFAHFYANLLYEAANDGKEYEEVVQECERALAI 172 (1229)
Q Consensus 140 eiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI 172 (1229)
+.-..+|.++...+ .|++|...+.+++.+
T Consensus 86 ~~~~~la~~~~~~g----~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 86 AVHAALAVSHTNEH----NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
T ss_conf 99999999999859----999999999999985
No 5
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=1.00 E-value=1 Score=42.28 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34699999999998609989999999999985138313579997721358998520378147999997999999999631
Q 000910 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~lqG~i~~~~A~~~ed~~~K~~hL~~Ale~~s~A~~L 134 (1229)
.....-...+..++..|++.+|+...+.++...|.. +.++...|.++.... +. ..|+.+|.+|..+
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g----~~-------~~A~~~~~~al~~ 81 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLG----LY-------EQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTT----CH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHH----HH-------HHHHHHHHHHHHC
T ss_conf 999999999999999812999999999999869766---899999999999985----19-------9999999999856
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99726778889999999830386389999999998436799996533
Q 000910 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 135 sPnsIeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
.|+.......+|.+++.+ +.|++|...+.+++.+. |.+|...
T Consensus 82 ~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~-p~~~~~~ 123 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQL----GDLDGAESGFYSARALA-AAQPAHE 123 (142)
T ss_dssp CTTCTHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHH-HTCGGGH
T ss_pred CCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHC-CCCCCHH
T ss_conf 999969999999999981----89999999999999858-8880059
No 6
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=1.00 E-value=1 Score=42.10 Aligned_cols=101 Identities=9% Similarity=-0.062 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34699999999998609989999999999985138313579997721358998520378147999997999999999631
Q 000910 55 GAIKLECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAEL 134 (1229)
Q Consensus 55 aaIRkEae~AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~lqG~i~~~~A~~~ed~~~K~~hL~~Ale~~s~A~~L 134 (1229)
.....-...+..+++.|++.+|+...+.++...|+. +.++..-|.+++.+.. . ..|+.+|.+|..+
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~----~-------~~Ai~~~~~al~l 99 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDYIMGLAAIYQIKEQ----F-------QQAADLYAVAFAL 99 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC----H-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHCC----H-------HHHHHHHHHHHHH
T ss_conf 999999999999998599999999999999759998---8999999999998824----9-------9999999999850
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 997267788899999998303863899999999984367
Q 000910 135 SPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIE 173 (1229)
Q Consensus 135 sPnsIeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~ 173 (1229)
.|+..+.-...|.+++.+ +.|++|...+++|+.+.
T Consensus 100 ~P~~~~~~~~lg~~~~~l----g~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRL----KAPLKAKECFELVIQHS 134 (151)
T ss_dssp SSSCCHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHC
T ss_conf 888828999999999985----99999999999999758
No 7
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=1.00 E-value=1 Score=40.70 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=76.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99999986099899999999999851383135799977213589985203781479999979999999996319972677
Q 000910 62 ERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEF 141 (1229)
Q Consensus 62 e~AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~lqG~i~~~~A~~~ed~~~K~~hL~~Ale~~s~A~~LsPnsIei 141 (1229)
.-+.-+...|++.+|++..+..+..+|+. +.+|..-|.++.++.. +..|+.+|.+|..+.|+..+.
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---~~a~~nLg~~l~~~g~-----------~~eA~~~~~~Al~l~P~~~~a 79 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGK-----------LQEALMHYKEAIRISPTFADA 79 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999998699999999999999868998---9999999999998699-----------999999999999809998999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8889999999830386389999999998436799996
Q 000910 142 AHFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 142 A~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
-..+|.++..+ +.|++|...+++||.+. |.++
T Consensus 80 ~~nLg~~l~~~----g~~~~A~~~~~kAl~l~-P~~~ 111 (723)
T 4gyw_A 80 YSNMGNTLKEM----QDVQGALQCYTRAIQIN-PAFA 111 (723)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHHHC-CCCH
T ss_conf 99999999984----99999999999999809-9989
No 8
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=1.00 E-value=1 Score=40.57 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH----------------HHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999986099899999999999851383135799977----------------21358998520378147999997
Q 000910 59 LECERALTALRRGNHKKALRLMKELSSRHENSAYVALIHRV----------------QGTVCVKVASIIDDLNSKQRHLK 122 (1229)
Q Consensus 59 kEae~AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~l----------------qG~i~~~~A~~~ed~~~K~~hL~ 122 (1229)
.-..++..++..|++.+|+...+..+...|.. +.++.. .|.++... .+ ..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----g~-------~~ 71 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR---TEMYYWTNVDKNSEISSKLATELALAYKKN----RN-------YD 71 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH---HHHHHHHHSCTTSHHHHHHHHHHHHHHHHT----TC-------HH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHCCHHHHHHHHHHHHHHHHHHC----CC-------HH
T ss_conf 99999999998799899999999999748888---279998520000443399999999999887----99-------99
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999963199726778889999999830386389999999998436799996533
Q 000910 123 NAIESAKKAAELSPHSVEFAHFYANLLYEAANDGKEYEEVVQECERALAIENPIDPAKE 181 (1229)
Q Consensus 123 ~Ale~~s~A~~LsPnsIeiA~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DPA~~ 181 (1229)
.|+.+|.++..+.|+.++.-..+|.+++.. +.|++|..-+.++|.+. |.+|...
T Consensus 72 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~-P~~~~a~ 125 (208)
T 3urz_A 72 KAYLFYKELLQKAPNNVDCLEACAEMQVCR----GQEKDALRMYEKILQLE-ADNLAAN 125 (208)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHCC-CCCHHHH
T ss_conf 999999999987889889999999999985----99999999999998709-9878999
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=1.00 E-value=1 Score=40.38 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=65.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99998609989999999999985138313579997721358998520378147999997999999999631997267788
Q 000910 64 ALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFAH 143 (1229)
Q Consensus 64 AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~lqG~i~~~~A~~~ed~~~K~~hL~~Ale~~s~A~~LsPnsIeiA~ 143 (1229)
|.-++..|++.+|+...+..+...|+. +.+|..-|.++.... +. ..|+.+|.+|..+.|+..+.-.
T Consensus 38 a~~y~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~----~~-------~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 38 AKLYYEAKEYDLAKKYICTYINVQERD---PKAHRFLGLLYELEE----NT-------DKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTT----CH-------HHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCC----CH-------HHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999699999999999999739998---999999999998718----60-------8999999999986989899999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHH-HHHHHCCCCCCCCCC
Q ss_conf 8999999983038638999999-999843679999653
Q 000910 144 FYANLLYEAANDGKEYEEVVQE-CERALAIENPIDPAK 180 (1229)
Q Consensus 144 f~A~lL~ela~~~~~YeeAv~E-c~RALaI~sP~DPA~ 180 (1229)
.+|.+++..+ .|+++... +++|+.+. |.+|..
T Consensus 104 ~la~~~~~~~----~~~~aa~~~~~~al~l~-P~~~~~ 136 (150)
T 4ga2_A 104 KIAELLCKND----VTDGRAKYWVERAAKLF-PGSPAV 136 (150)
T ss_dssp HHHHHHHHHC----SSSSHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHHHHC-CCCHHH
T ss_conf 9999999869----95999999999999859-499999
No 10
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=1.00 E-value=1 Score=40.20 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=82.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999860998999999999998513831357999772135899852037814799999799999999963199726778
Q 000910 63 RALTALRRGNHKKALRLMKELSSRHENSAYVALIHRVQGTVCVKVASIIDDLNSKQRHLKNAIESAKKAAELSPHSVEFA 142 (1229)
Q Consensus 63 ~AL~~~rrGnH~KAL~rakeLasrHp~S~~~alvH~lqG~i~~~~A~~~ed~~~K~~hL~~Ale~~s~A~~LsPnsIeiA 142 (1229)
-+..+.+.|++.+|+...++.+...|+. +.++..-|.++.++.. . ..|+.+|.+|..+.|+..+.-
T Consensus 49 Lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~nLg~~l~~~g~----~-------~~A~~~~~kAl~l~P~~~~a~ 114 (723)
T 4gyw_A 49 LASVLQQQGKLQEALMHYKEAIRISPTF---ADAYSNMGNTLKEMQD----V-------QGALQCYTRAIQINPAFADAH 114 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC----H-------HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCC----H-------HHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999998699999999999999809998---9999999999998499----9-------999999999998099989999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 889999999830386389999999998436799996
Q 000910 143 HFYANLLYEAANDGKEYEEVVQECERALAIENPIDP 178 (1229)
Q Consensus 143 ~f~A~lL~ela~~~~~YeeAv~Ec~RALaI~sP~DP 178 (1229)
..+|.++..+ +.|++|+..+++||.+. |.++
T Consensus 115 ~~Lg~~~~~~----g~~~eAi~~~~~Al~l~-P~~~ 145 (723)
T 4gyw_A 115 SNLASIHKDS----GNIPEAIASYRTALKLK-PDFP 145 (723)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHHC-SCCH
T ss_pred HHHHHHHHHC----CCHHHHHHHHHHHHHHC-CCCH
T ss_conf 9999999986----99999999999999739-9985
Done!