Query 000911
Match_columns 1229
No_of_seqs 207 out of 288
Neff 6.0
Searched_HMMs 46136
Date Tue Apr 2 00:48:37 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1943 Beta-tubulin folding c 100.0 4E-226 9E-231 2012.9 82.7 1088 5-1192 4-1131(1133)
2 COG5234 CIN1 Beta-tubulin fold 100.0 1.4E-65 3E-70 593.9 37.2 929 29-1183 2-986 (993)
3 PF12612 TFCD_C: Tubulin foldi 100.0 8.1E-38 1.7E-42 334.4 17.7 188 900-1092 2-193 (193)
4 KOG2171 Karyopherin (importin) 99.1 1.9E-06 4.2E-11 109.4 45.3 383 395-805 48-552 (1075)
5 KOG1824 TATA-binding protein-i 97.9 0.18 3.9E-06 64.3 48.8 437 379-936 169-682 (1233)
6 KOG2171 Karyopherin (importin) 97.6 0.52 1.1E-05 61.7 44.6 655 55-850 228-1038(1075)
7 PRK09687 putative lyase; Provi 97.6 0.0044 9.5E-08 71.0 19.7 257 384-799 23-279 (280)
8 PLN03200 cellulose synthase-in 97.5 0.26 5.7E-06 68.8 38.8 140 380-538 524-675 (2102)
9 KOG1943 Beta-tubulin folding c 97.3 1.3 2.8E-05 57.8 40.3 64 692-759 549-612 (1133)
10 KOG1824 TATA-binding protein-i 97.2 1.4 3.1E-05 56.7 36.6 220 684-941 171-409 (1233)
11 KOG0915 Uncharacterized conser 97.1 1.4 2.9E-05 59.4 35.4 633 382-1137 574-1301(1702)
12 PRK13800 putative oxidoreducta 96.5 0.13 2.8E-06 68.1 21.4 140 660-862 756-895 (897)
13 PLN03200 cellulose synthase-in 96.5 4.1 8.9E-05 57.7 35.4 542 384-1059 99-724 (2102)
14 KOG1241 Karyopherin (importin) 96.4 0.68 1.5E-05 58.3 24.7 329 736-1161 97-455 (859)
15 PF01602 Adaptin_N: Adaptin N 96.3 0.75 1.6E-05 56.7 24.8 87 379-472 74-161 (526)
16 KOG2023 Nuclear transport rece 96.1 1.8 3.9E-05 54.0 25.8 395 603-1056 136-589 (885)
17 PRK09687 putative lyase; Provi 95.9 0.47 1E-05 54.5 19.0 184 606-863 34-218 (280)
18 PF12460 MMS19_C: RNAPII trans 95.9 2.3 4.9E-05 51.6 25.6 326 49-521 63-414 (415)
19 KOG2023 Nuclear transport rece 95.3 12 0.00025 47.3 29.1 536 197-801 174-816 (885)
20 PF01602 Adaptin_N: Adaptin N 95.2 11 0.00025 46.4 36.0 456 600-1183 47-522 (526)
21 PRK13800 putative oxidoreducta 95.1 0.57 1.2E-05 62.2 18.3 244 515-932 622-865 (897)
22 PTZ00429 beta-adaptin; Provisi 94.8 19 0.00042 47.0 34.2 323 379-865 100-432 (746)
23 KOG0915 Uncharacterized conser 94.5 12 0.00027 50.9 27.3 341 381-773 858-1321(1702)
24 KOG0212 Uncharacterized conser 93.8 6.3 0.00014 48.7 21.1 389 695-1184 8-425 (675)
25 KOG1242 Protein containing ada 93.8 24 0.00053 44.2 26.4 331 487-936 150-485 (569)
26 KOG1242 Protein containing ada 93.2 30 0.00064 43.5 36.6 212 610-865 31-244 (569)
27 PF02985 HEAT: HEAT repeat; I 92.9 0.079 1.7E-06 40.3 2.3 30 385-414 1-30 (31)
28 KOG0211 Protein phosphatase 2A 91.7 23 0.00049 46.3 23.3 164 662-865 495-663 (759)
29 KOG0213 Splicing factor 3b, su 91.0 58 0.0013 41.9 26.8 165 659-853 812-982 (1172)
30 cd00020 ARM Armadillo/beta-cat 90.6 0.16 3.5E-06 48.9 2.2 106 385-499 8-119 (120)
31 KOG1077 Vesicle coat complex A 90.4 9.4 0.0002 48.3 17.2 223 914-1188 157-402 (938)
32 KOG1241 Karyopherin (importin) 90.3 67 0.0015 41.5 37.6 452 380-928 360-852 (859)
33 PF12755 Vac14_Fab1_bd: Vacuol 90.2 0.3 6.5E-06 47.4 3.7 85 441-535 4-89 (97)
34 PF12717 Cnd1: non-SMC mitotic 89.0 9 0.0002 40.9 14.3 94 786-936 1-94 (178)
35 KOG2062 26S proteasome regulat 88.7 4 8.7E-05 51.6 12.5 178 608-803 427-654 (929)
36 PF10508 Proteasom_PSMB: Prote 88.1 27 0.00057 43.7 19.6 345 427-802 43-420 (503)
37 PF12755 Vac14_Fab1_bd: Vacuol 87.9 0.91 2E-05 44.1 5.2 55 378-432 21-78 (97)
38 PF13646 HEAT_2: HEAT repeats; 86.6 3.9 8.5E-05 37.6 8.6 79 697-798 10-88 (88)
39 PF12348 CLASP_N: CLASP N term 85.7 26 0.00057 38.4 16.0 183 605-805 17-209 (228)
40 PF12460 MMS19_C: RNAPII trans 85.2 99 0.0022 37.6 29.1 351 389-802 4-394 (415)
41 KOG2259 Uncharacterized conser 83.8 85 0.0018 40.1 20.0 64 694-757 241-309 (823)
42 PF13646 HEAT_2: HEAT repeats; 82.9 1.3 2.7E-05 40.9 3.5 57 384-447 31-87 (88)
43 KOG1020 Sister chromatid cohes 81.0 2.6E+02 0.0055 39.3 31.3 483 381-936 813-1370(1692)
44 KOG1967 DNA repair/transcripti 80.5 89 0.0019 41.2 19.1 148 729-930 867-1020(1030)
45 PF05004 IFRD: Interferon-rela 80.4 58 0.0013 38.2 16.7 109 688-801 45-159 (309)
46 PF12348 CLASP_N: CLASP N term 80.0 47 0.001 36.4 15.2 88 1095-1183 113-205 (228)
47 PF12717 Cnd1: non-SMC mitotic 79.9 78 0.0017 33.8 16.3 130 700-861 1-134 (178)
48 KOG2274 Predicted importin 9 [ 79.4 2.3E+02 0.0049 37.7 38.4 73 380-453 85-158 (1005)
49 KOG0212 Uncharacterized conser 77.9 2E+02 0.0044 36.3 32.0 187 566-775 17-216 (675)
50 PF13513 HEAT_EZ: HEAT-like re 77.9 2 4.4E-05 36.5 2.8 33 379-411 23-55 (55)
51 KOG1248 Uncharacterized conser 76.1 64 0.0014 43.5 16.5 259 201-533 654-923 (1176)
52 COG5116 RPN2 26S proteasome re 74.7 2.4E+02 0.0053 35.6 19.6 174 689-935 518-692 (926)
53 KOG1248 Uncharacterized conser 74.2 3.4E+02 0.0074 37.1 29.4 356 487-935 490-857 (1176)
54 KOG0166 Karyopherin (importin) 73.0 1.5E+02 0.0033 37.1 17.9 135 658-802 79-224 (514)
55 PF10165 Ric8: Guanine nucleot 71.6 2.1E+02 0.0044 35.5 18.9 70 1071-1140 242-335 (446)
56 KOG0213 Splicing factor 3b, su 71.2 1.8E+02 0.0038 37.8 17.7 182 602-807 483-670 (1172)
57 PF12719 Cnd3: Nuclear condens 71.0 52 0.0011 38.1 13.0 120 767-936 26-145 (298)
58 PF14664 RICTOR_N: Rapamycin-i 71.0 78 0.0017 38.2 14.7 52 1091-1142 212-269 (371)
59 PF10508 Proteasom_PSMB: Prote 70.5 2.9E+02 0.0063 34.7 27.0 171 658-865 51-230 (503)
60 PTZ00429 beta-adaptin; Provisi 70.1 3.6E+02 0.0079 35.7 43.4 75 378-454 134-210 (746)
61 PF05918 API5: Apoptosis inhib 69.1 3.3E+02 0.0071 34.8 20.1 157 657-842 33-191 (556)
62 PF01347 Vitellogenin_N: Lipop 69.1 55 0.0012 41.7 13.8 86 784-931 501-586 (618)
63 KOG2025 Chromosome condensatio 68.5 2.1E+02 0.0045 37.1 17.6 89 661-754 100-189 (892)
64 KOG2259 Uncharacterized conser 66.3 2.8E+02 0.006 35.8 17.9 123 662-802 389-511 (823)
65 KOG0392 SNF2 family DNA-depend 66.2 1.3E+02 0.0029 41.0 16.0 57 1126-1187 647-703 (1549)
66 PF13513 HEAT_EZ: HEAT-like re 64.9 8.8 0.00019 32.5 3.8 52 662-713 3-54 (55)
67 smart00638 LPD_N Lipoprotein N 62.8 1.7E+02 0.0037 37.0 16.3 144 682-863 392-542 (574)
68 cd00020 ARM Armadillo/beta-cat 61.0 34 0.00074 32.5 7.7 98 786-932 20-118 (120)
69 KOG1967 DNA repair/transcripti 60.8 57 0.0012 42.9 11.2 55 379-433 945-1006(1030)
70 PF12054 DUF3535: Domain of un 60.3 4.1E+02 0.009 32.9 19.6 74 397-473 100-178 (441)
71 KOG0211 Protein phosphatase 2A 57.1 1.9E+02 0.004 38.2 15.2 230 659-960 411-651 (759)
72 PF12719 Cnd3: Nuclear condens 57.1 3.6E+02 0.0079 31.2 17.5 117 686-865 26-142 (298)
73 KOG0889 Histone acetyltransfer 54.2 1.1E+03 0.023 36.6 22.4 158 686-865 983-1154(3550)
74 PF02985 HEAT: HEAT repeat; I 52.0 28 0.0006 26.4 4.2 26 691-716 4-29 (31)
75 KOG4224 Armadillo repeat prote 51.9 1.3E+02 0.0027 36.1 11.1 143 653-803 300-447 (550)
76 PF13251 DUF4042: Domain of un 50.0 14 0.0003 40.1 3.1 127 487-625 2-175 (182)
77 KOG2956 CLIP-associating prote 49.8 1.6E+02 0.0035 36.4 12.0 184 263-516 306-493 (516)
78 COG1413 FOG: HEAT repeat [Ener 47.8 4.1E+02 0.0088 30.9 15.1 84 694-800 50-133 (335)
79 COG5240 SEC21 Vesicle coat com 47.4 7.2E+02 0.016 31.8 23.5 141 543-718 194-334 (898)
80 KOG1059 Vesicle coat complex A 47.2 1E+02 0.0022 39.8 10.0 98 1084-1189 117-214 (877)
81 KOG1822 Uncharacterized conser 45.9 1.3E+02 0.0029 42.6 11.6 133 665-805 851-991 (2067)
82 KOG2956 CLIP-associating prote 45.6 5.2E+02 0.011 32.2 15.2 138 658-806 342-481 (516)
83 KOG1058 Vesicle coat complex C 44.5 8.9E+02 0.019 32.0 17.9 88 825-932 348-441 (948)
84 KOG2025 Chromosome condensatio 44.3 8.8E+02 0.019 31.9 18.0 192 263-538 61-254 (892)
85 COG5096 Vesicle coat complex, 44.1 2E+02 0.0043 37.8 12.4 96 692-803 97-196 (757)
86 PF11510 FA_FANCE: Fanconi Ana 43.7 2.6E+02 0.0057 32.2 12.1 210 910-1150 11-234 (263)
87 COG5096 Vesicle coat complex, 42.9 1.7E+02 0.0037 38.4 11.6 83 711-802 71-156 (757)
88 KOG1240 Protein kinase contain 41.7 2.7E+02 0.0059 38.1 13.0 134 684-841 459-629 (1431)
89 COG5215 KAP95 Karyopherin (imp 41.0 8.9E+02 0.019 31.0 27.0 322 735-1140 100-435 (858)
90 KOG4653 Uncharacterized conser 40.4 6.9E+02 0.015 33.4 15.9 187 198-452 724-918 (982)
91 PF03130 HEAT_PBS: PBS lyase H 38.3 32 0.00069 25.4 2.5 14 400-413 1-14 (27)
92 PF14222 MOR2-PAG1_N: Cell mor 37.6 9.9E+02 0.021 30.6 17.7 219 669-936 16-251 (552)
93 KOG4653 Uncharacterized conser 37.6 1.5E+02 0.0033 39.0 9.8 151 381-546 765-921 (982)
94 PF05918 API5: Apoptosis inhib 37.4 1E+03 0.022 30.6 19.0 33 825-865 55-87 (556)
95 PF05004 IFRD: Interferon-rela 35.3 8E+02 0.017 28.8 19.8 73 1090-1162 200-280 (309)
96 PF10363 DUF2435: Protein of u 35.1 67 0.0014 31.0 4.9 48 380-431 39-86 (92)
97 KOG1240 Protein kinase contain 34.4 5.4E+02 0.012 35.6 14.0 268 198-506 422-731 (1431)
98 PF08167 RIX1: rRNA processing 34.0 5.4E+02 0.012 27.3 12.0 120 786-951 38-159 (165)
99 PF08568 Kinetochor_Ybp2: Unch 31.1 6.8E+02 0.015 32.4 14.5 104 436-542 359-470 (633)
100 KOG1820 Microtubule-associated 30.8 7.5E+02 0.016 33.1 14.7 106 687-805 336-446 (815)
101 TIGR02270 conserved hypothetic 30.5 3.5E+02 0.0075 33.2 11.1 87 689-800 88-174 (410)
102 PF11919 DUF3437: Domain of un 27.8 50 0.0011 31.8 2.7 20 608-627 2-21 (90)
103 KOG2137 Protein kinase [Signal 27.7 7.8E+02 0.017 32.2 13.6 172 997-1187 324-498 (700)
104 COG1413 FOG: HEAT repeat [Ener 26.7 3.5E+02 0.0076 31.4 10.1 132 379-548 104-243 (335)
105 COG5181 HSH155 U2 snRNP splice 26.0 1.6E+03 0.034 29.3 22.2 95 740-865 292-386 (975)
106 PF10350 DUF2428: Putative dea 25.8 1E+03 0.022 27.1 14.2 111 687-802 100-226 (255)
107 cd08050 TAF6 TATA Binding Prot 25.2 5.5E+02 0.012 30.6 11.4 56 396-451 280-339 (343)
108 COG5181 HSH155 U2 snRNP splice 25.2 1.4E+03 0.029 29.8 14.4 144 379-541 725-868 (975)
109 KOG1949 Uncharacterized conser 25.0 9.9E+02 0.021 31.4 13.4 152 639-799 165-328 (1005)
110 PF05600 DUF773: Protein of un 24.9 4E+02 0.0086 33.7 10.4 91 619-718 68-168 (507)
111 smart00543 MIF4G Middle domain 24.6 8.3E+02 0.018 25.6 16.1 153 995-1167 12-177 (200)
112 KOG1062 Vesicle coat complex A 23.0 1.7E+03 0.037 29.7 15.2 52 1109-1163 346-397 (866)
113 KOG1059 Vesicle coat complex A 22.9 1.9E+03 0.04 29.2 15.3 109 898-1055 137-245 (877)
114 PF10363 DUF2435: Protein of u 22.1 7.2E+02 0.016 24.0 9.4 71 201-276 3-75 (92)
115 KOG1062 Vesicle coat complex A 22.0 2E+03 0.043 29.1 18.6 361 393-795 151-574 (866)
116 PF12054 DUF3535: Domain of un 21.9 1.3E+03 0.028 28.7 13.9 50 744-803 294-343 (441)
117 PF12074 DUF3554: Domain of un 21.7 4.6E+02 0.01 30.8 9.8 58 697-758 33-90 (339)
118 KOG0392 SNF2 family DNA-depend 20.7 1.3E+02 0.0027 41.3 5.0 106 387-500 819-925 (1549)
No 1
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-226 Score=2012.89 Aligned_cols=1088 Identities=43% Similarity=0.665 Sum_probs=989.7
Q ss_pred ccccccccchhhhhhhHHhHHhhHHHHHHHHHHHH-hcCCCCChhhHHHHHHHHHhhhhcCCCchHhHHhhHHHHHHHHH
Q 000911 5 IFSQEEDELDCKEIVLQKYFLQEWKIVKSLLDEIV-SYGRVPDTSSVHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIR 83 (1229)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~F~~e~~ev~~ll~~l~-~~~~~~~~~~~~~~~~ild~yQEqP~LLDp~Le~~i~~L~~~~~ 83 (1229)
+.+||+||+...++....++ .|+.++++++++|+ ++.+...|...+++..+|++|||||+||||||++++++|+++++
T Consensus 4 ~~ee~~de~~~~~~~~ea~~-~~l~~ir~lld~i~~~~~~~~~e~~~~~~~~vl~kyQeqP~LLDp~L~~~v~~L~~~v~ 82 (1133)
T KOG1943|consen 4 LEEEEEDEDLPMSQSLEAFP-CELYQIRSLLDSIRVSGGRTSREVPLEQYSRVLDKYQEQPHLLDPHLESIVPNLLDIVR 82 (1133)
T ss_pred chhhhccccchhhhHHHHHH-HHHHHHHHHHhhhhhccCCcCCcchhHHHHHHHHHHhhchhhccchHHHHHHHHHHHHH
Confidence 45778887777776555555 79999999999997 66666778889999999999999999999999999999999998
Q ss_pred hhcccCCCChhHHhhhhHHHHHhheeeeeeecccceeecCCCCccCHHHHHHHHHhcccCccccccccCCcchhHHHHHH
Q 000911 84 SKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVI 163 (1229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~i~~~lY~l~KVRG~K~i~~~fPhev~~Le~vl~~L~~~~~~~s~~~~~~~~~~~We~rYvl 163 (1229)
..+.+.+.. +.+++++|.+|||||||+|+++|||+|+||+|++++|+.+++ ++..+||+||++
T Consensus 83 ~~~~d~~~~--------~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~np---------ss~~~~~~ryil 145 (1133)
T KOG1943|consen 83 KFTIDLGEL--------HLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNP---------SSFSDWETRYIL 145 (1133)
T ss_pred hccccchhh--------HHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCc---------chHHHHHHHHHH
Confidence 765554433 789999999999999999999999999999999999997776 667899999999
Q ss_pred HHHHHHHhhcCCCCCCCCCcccccccCCCCCChhHHHHHHHHHHHhhhcCCchhhHHHHHHHHHhcCCChHHHHHHHHHH
Q 000911 164 LLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEW 243 (1229)
Q Consensus 164 LLWLS~Lvl~PFdLs~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~~k~r~aAa~LLsrl~tR~D~~~~l~~fl~w 243 (1229)
|+|||++|++||||+++|.+...+ ..+++.||+++++.|+.+.|+.|++||+|++|+++|+|+.+.+.+|++|
T Consensus 146 LlWLsvlllnPF~l~rlD~s~~~~-------kt~~i~rI~~~~~~Yl~~~~~~r~~aalllsk~~sR~D~~~~~~~Fl~~ 218 (1133)
T KOG1943|consen 146 LLWLSVLLLNPFDLSRLDESLTFD-------KTNVILRILSFFENYLISSGILRRSAALLLSKLFSRTDVKDLLLSFLDW 218 (1133)
T ss_pred HHHHHHHHcCCCcccccCcccccC-------CchHHHHHHHHHHHHHhccchhHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 999999999999999999965422 3478999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccchHHHHHHHHHHHHHHHhcChhhhhhhhHHHHHhh--hhhhccCCCCCchhHHHHHHHHHHHHhhcc
Q 000911 244 THEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDA--STMLKSGSAARSPLLRKYLMKLTQRLGLTC 321 (1229)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~g~r~~l~~~~~~i~~~~--~~l~~s~~~~~~~l~rKl~iKl~qrl~l~~ 321 (1229)
.++..+ .+.++.|+..|.|..+++|||+++|+++.||++..++.. +..+..+ +.++||+++|++||||+++
T Consensus 219 ~l~~~s---~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~----~~llrKllvKl~QRiGlv~ 291 (1133)
T KOG1943|consen 219 LLDCPS---TETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDG----QSLLRKLLVKLVQRIGLVS 291 (1133)
T ss_pred hhcccc---hhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhccccccccc----HhHHHHHHHHHHHHhhhee
Confidence 554443 233445888899999999999999999999999999833 3333333 4799999999999999999
Q ss_pred cCCCcccccccccccccccccccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhccCCCCchhH
Q 000911 322 LPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVR 401 (1229)
Q Consensus 322 L~pr~a~WrY~rg~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~dv~e~vE~iI~~LL~~L~d~dT~VR 401 (1229)
||||+|+|||+||+|||++||+..+.++ +. +. .-.++++|+.||||+||.||++||++|+|.||.||
T Consensus 292 l~prs~sWrY~rg~rsl~~nl~~~s~~~-----~~-------~~-~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~Vr 358 (1133)
T KOG1943|consen 292 LKPRSPSWRYSRGTRSLASNLDPDSFAP-----SE-------PV-ILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVR 358 (1133)
T ss_pred cCCCCcchhhhcccchhhhccCcccccc-----Cc-------cc-ccccccccccccHHHHHHHHHHHHHhccCCcchhh
Confidence 9999999999999999999998765422 11 11 11224455566999999999999999999999999
Q ss_pred HHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCCCCccchHHHHHHhheEeeccccc
Q 000911 402 WSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSH 481 (1229)
Q Consensus 402 wsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p~~L~~vv~~v~~aL~fd~rrg~~ 481 (1229)
||||||+|||+.|||+++|||||++|+++|+|.+++++|||+|||||||++||+++|+++++|+|+++|||+||+++|++
T Consensus 359 WSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~ 438 (1133)
T KOG1943|consen 359 WSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQH 438 (1133)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhhccCCCCCCCccceeeecee
Q 000911 482 SVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYF 561 (1229)
Q Consensus 482 SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~VGR~G~~phGI~Iv~~~Dyf 561 (1229)
|+|+||||||||+||||+|+|+|++++|++++|++.|+++|+|||||||||||+|||||+|||||||||||+|++++|||
T Consensus 439 s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~ 518 (1133)
T KOG1943|consen 439 SVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYF 518 (1133)
T ss_pred ccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccchhhHHHHHHHHhccccChHHHHHHHhhcccchh------------------------------ccCCcCCCChhH
Q 000911 562 SLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHW------------------------------LTPFTLSTDLCT 611 (1229)
Q Consensus 562 aV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HW------------------------------ll~~~~s~dl~~ 611 (1229)
||++|+|||+++++.||+|++|++|+++||+.+|++|| +++.+.+.|.+.
T Consensus 519 sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~ 598 (1133)
T KOG1943|consen 519 SVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASM 598 (1133)
T ss_pred hhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHH
Confidence 99999999999999999999999999999999999999 677888999999
Q ss_pred HHHHHHHHHHHHHHHhccccc---CChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchh-HHHH
Q 000911 612 RHGATLAAGEVVLALCKYDYA---LPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEK-TKRS 687 (1229)
Q Consensus 612 RHGalLalaei~~al~~~~~~---~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~-~~~~ 687 (1229)
|||.++|.||++.+++++... .++..++.+.++++.++++++|||+| ++||+++|++|++++.++.++..+ +.+.
T Consensus 599 r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~-~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~ 677 (1133)
T KOG1943|consen 599 RHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG-TLMRQATLKFIEQLSLSKDRLFQDFVIEN 677 (1133)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchH-HHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 999999999999999998722 35667777888999999999999998 999999999999999999988776 5688
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCC-chhhhhHHHHHhhcCChHhhhhhHH
Q 000911 688 LLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDP-NPAIRRGSALALGVLPYELLANSWR 766 (1229)
Q Consensus 688 ~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~-~~~~r~G~alaLG~lp~~~l~~~~~ 766 (1229)
|++++.+++++++ +||++|++|+..++..|+..++++. ..++.+|++.+++. +++.|||+++|+|.+|+++++.+++
T Consensus 678 ~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~-~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q 755 (1133)
T KOG1943|consen 678 WQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE-APLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQ 755 (1133)
T ss_pred HHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh-hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHH
Confidence 9999999999998 9999999999999999999876554 37999999999854 9999999999999999999999887
Q ss_pred HHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCC
Q 000911 767 DVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNR 846 (1229)
Q Consensus 767 ~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~R 846 (1229)
+++ |++. .+..+.+.|+|+|++.|.+++++|++++. ..+..+.++++++|++||+|||||+|
T Consensus 756 ~~l---c~~~-l~~~p~d~~a~aR~~~V~al~~v~~~~~~--------------~~~~~~~~k~~e~LL~~lddYttd~r 817 (1133)
T KOG1943|consen 756 EKL---CKLV-LELLPSDAWAEARQQNVKALAHVCKTVTS--------------LLFSESIEKFRETLLNALDDYTTDSR 817 (1133)
T ss_pred HHH---HHHH-hccCcccccHHHHHHHHHHHHHHHHHHHH--------------hhccccHHHHHHHHHHHHhhcccccC
Confidence 766 3332 22223445999999999999999999872 44567899999999999999999999
Q ss_pred CcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000911 847 GDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAA 926 (1229)
Q Consensus 847 GDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~ 926 (1229)
||||||||+|||+++..++..+. .|++++++.+++++++++||++|||||+|+.|+
T Consensus 818 GDVGswVReaAm~al~~~~~~l~------------------------~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~ 873 (1133)
T KOG1943|consen 818 GDVGSWVREAAMKALSSLLDTLS------------------------SPKLLDEDSINRIIRYFVQQAVEKIDRLRELAA 873 (1133)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhc------------------------CcccccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999875543 278999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCC-CcchHHHhhhcCCCc-ccCcCCCCChhHHHhhhcCchhhHHHHhhcceeecccCccchHHHHHH
Q 000911 927 KVLRRILYNKTIFVP-IPHREKLEEIVPNEA-DLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASIS 1004 (1229)
Q Consensus 927 ~~l~~ll~~~~~~~p-ip~~~~L~~i~~~~~-~~~w~~~~~~fp~~~~LL~~~~y~~~ll~GLv~S~Gglteslvk~S~~ 1004 (1229)
.++.+++++ .|++| +||++.|.++||++. +++|..+...||++++|+.+|.|+++++.|+|+|+||++|++++.|.+
T Consensus 874 ~~~~qi~~~-~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~f~L~~~Ll~~~~y~~~v~lGl~vs~ggl~esl~k~a~q 952 (1133)
T KOG1943|consen 874 SALNQIVVH-SPSIPHFRHIEKLEEIFPRDYANVPWALPPTLFPLNSSLLELPRYYEEVLLGLVVSLGGLTESLIKLAKQ 952 (1133)
T ss_pred HHHhceeec-CCCCCcchHHHHHHhhcCcccccCCCcccchhhhHHHHHHhhHHHHHHHhhhhHHHhhhhHHHHHHHHHH
Confidence 999999999 59999 999999999999654 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccchhcchHHHHHHHHHHHHHHhhcCCCceeccHHHHHHHHHhccccccccCCchhHHHHHHHHHHHHH
Q 000911 1005 ALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVEL 1084 (1229)
Q Consensus 1005 aL~~yl~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~Ll~~g~f~~~~~~~~~~~~~l~~l~~~e~ 1084 (1229)
++++|++ ++.+ ++.....+++++++++..+..++|+..|.++++..+|.+..|...+.+ +|...+++.|+.|.
T Consensus 953 ~l~e~~R--~~~~---dp~t~~~~~stl~~~~~~~l~~eri~~~~l~~l~~~f~s~~~~~~~~~--~F~~~~~~~~~~~~ 1025 (1133)
T KOG1943|consen 953 ALLEYVR--DENS---DPKTIGSRDSTLLQLIEEALLNERIMERFLRPLMIVFNSLIFLYGEFA--TFANLMLDSCKTER 1025 (1133)
T ss_pred HHHHHHH--Hhhc---CcccccchHHHHHHHHHHHHHHHHhcCccceeHHHHhcchhhhccCcc--cHHHHHHHHHHHHH
Confidence 9999998 4444 778888899999999999999999999999999999999677665666 88889999999999
Q ss_pred HccCChHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHhcCCCcchhhHHHHHhhhhhcC
Q 000911 1085 KATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETC 1164 (1229)
Q Consensus 1085 ~~sk~v~kL~~~i~v~~~l~~~~~~~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll~~~d~~~~e~~d~~~~~L~~td 1164 (1229)
++++++.|..++|.++|++++++..++++|+++++.+|+|++|+|||++|+++|++++.+++. + |++|++.++|++||
T Consensus 1026 ~~s~~~~~~~~~Ia~lc~~l~~~~~~~~~aLs~ll~~l~~~~~~vRkaAA~qly~al~~~~~~-~-~~mdeVle~Ls~t~ 1103 (1133)
T KOG1943|consen 1026 VSSKKIVKPLSAIAILCGLLQLEKLLRRKALSNLLVFLLNQGPKVRKAAAEQLYEALLRVSLV-G-ELMDEVLEKLSTTD 1103 (1133)
T ss_pred HHHhhhcchHHHHHHHHHHHcCchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhh-h-hhHHHHHHHHHhhc
Confidence 999999999999999999999998899999999999999999999999999999999998866 4 88999999999999
Q ss_pred CCCchhHhHHHHHHHHHHhCCCCCcccc
Q 000911 1165 WEGDMNVVKHQRLELYNLAGVGVGVLNN 1192 (1229)
Q Consensus 1165 W~~~~~~~r~~r~~l~~l~gv~~p~~~~ 1192 (1229)
|+.++.+++++||+||+++|++.|.+++
T Consensus 1104 w~~~~~~v~~qr~~L~~l~~~~~~~~~~ 1131 (1133)
T KOG1943|consen 1104 WQAPVGQVATQRNELCNLLGIDIPLLIQ 1131 (1133)
T ss_pred ccchHHHHHHHHHHHHHHhcCCchhccC
Confidence 9999999999999999999999995544
No 2
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=100.00 E-value=1.4e-65 Score=593.94 Aligned_cols=929 Identities=21% Similarity=0.274 Sum_probs=576.2
Q ss_pred HHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhhhhcCCCchHhHHhhHHHHHHHHHhhcccCCCChhHHhhhhHHHHHhh
Q 000911 29 KIVKSLLDEIVSYGRVPDTSS-VHKIRSIMDKYQEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIII 107 (1229)
Q Consensus 29 ~ev~~ll~~l~~~~~~~~~~~-~~~~~~ild~yQEqP~LLDp~Le~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 107 (1229)
+|...+.++.....+..+++. -..-..+++.+|.||.||||-|+..++.|..++..-. . + ...+.-.+
T Consensus 2 ~~~~~~s~s~q~~~~tl~p~~H~~~~v~~~~~~q~~P~lld~llp~~vp~L~~~~f~~~-~---k-------~n~~~a~l 70 (993)
T COG5234 2 DESLITSRSSQILDDTLDPRSHSVEAVKYLQFCQFQPTLLDKLLPKYVPNLASYLFKVK-G---K-------CNSITAIL 70 (993)
T ss_pred chHHHHhhhhhccCcccCccccchhHHHHHHhcccCcccccchhhhhHHHHHHHHhhhc-C---C-------cchHHHHH
Confidence 355666666665544433322 2236789999999999999999999999999765321 1 1 14466789
Q ss_pred eeeeeeecccceeecCCCCccCHHHHHHHHHhcccCccccccccCCcchhHHHHHHHHHHHHHhhcCCCCCCCCCccccc
Q 000911 108 YTLVTVCGYKAVIKFFPHQVSDLELAVSLLEKCHDTASVTSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANN 187 (1229)
Q Consensus 108 Y~l~KVRG~K~i~~~fPhev~~Le~vl~~L~~~~~~~s~~~~~~~~~~~We~rYvlLLWLS~Lvl~PFdLs~id~~~~~~ 187 (1229)
|.+||.||+|.|...||.-|.+++.++.+|...+. ..|...|++++||+.-.++||.|++++.+..-
T Consensus 71 ~q~~~~~~h~~v~v~l~~~I~~i~e~~~ll~dr~~------------sp~sf~~i~~~yL~~~~~~~~~l~sla~k~~~- 137 (993)
T COG5234 71 YQFCKIRGHKAVRVLLPVGIQYIKELYTLLNDRSN------------SPWSFHYIVLLYLSQALNTPFPLNSLADKLDV- 137 (993)
T ss_pred HHHHHHhhhhhhhhhchHHHHHHHHHHHHhhcccC------------CCCccchhhHhhhhhhhcCccccchhhhhhhc-
Confidence 99999999999999999999999999999986433 68999999999999999999999999887531
Q ss_pred ccCCCCCChhHHHHHHHHHHHhhhcCCchhhHHHHHHHHHhcCCChHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 000911 188 ENLGQNEPAPLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEA 267 (1229)
Q Consensus 188 ~~~~~~~~~~l~~rIl~l~~~yL~~~~k~r~aAa~LLsrl~tR~D~~~~l~~fl~w~~~~l~~~~~~~~~~~~~~G~L~~ 267 (1229)
-..+. +.+||.+.+.+-++.-..+++++-|.|..+.+.. .+ .+++.|.|.-
T Consensus 138 -----------~kT~~--~~~~leN~pi~i~~~nlv~~~lff~~da~d~ll~--------------Rs--~~~cl~~l~q 188 (993)
T COG5234 138 -----------KKTIY--AIKYLENSPIDIEASNLVLSRLFFRDDALDLLLK--------------RS--IFYCLFSLSQ 188 (993)
T ss_pred -----------CcEee--hhhHHhcCCCCCCHHHHHHHHHHHHHhHHHHHHH--------------HH--HHHHHHHHHH
Confidence 11222 7788999999999999999999999998777321 11 2555566555
Q ss_pred HHHHHHhcChhhhhhhhHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHhhcccCCCcccccccccccccccccccccc
Q 000911 268 LAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAA 347 (1229)
Q Consensus 268 La~ilK~g~r~~l~~~~~~i~~~~~~l~~s~~~~~~~l~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rsL~~nl~~~~~ 347 (1229)
.++++- +..+...|. + ...++.-++|+++|.+.|+|...||. |+.-
T Consensus 189 flki~~--qS~e~a~fy---------~----~g~e~s~L~~~l~~~lS~lGi~llP~----------------~~pi--- 234 (993)
T COG5234 189 FLKICL--QSVEVAQFY---------L----VGQENSALRKLLCKCLSRLGIVLLPV----------------NLPI--- 234 (993)
T ss_pred HHHHhh--eecccceeE---------E----ecccHHHHHHHHHHHhhhcCceeccc----------------ccCc---
Confidence 555542 111111221 1 11236789999999999999998873 2210
Q ss_pred cccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHH
Q 000911 348 FREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSV 427 (1229)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~ed~dv~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~v 427 (1229)
+.+.++...+|-|++.+++++++.||.+||++|||+++|.+|||..++.++|+ |
T Consensus 235 -------------------------~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-i 288 (993)
T COG5234 235 -------------------------DSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-I 288 (993)
T ss_pred -------------------------ccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-H
Confidence 11223568899999999999999999999999999999999999999999998 8
Q ss_pred HhhcCCC--------------CCCCchhhHHHHHHHHHhcCCCCCCCccc--hHHHHHHhheEeeccccccCCccccchh
Q 000911 428 LELFSPG--------------EGDGSWHGGCLALAELARRGLLLPSSLPK--VVPVIVKALHYDIRRGSHSVGSHVRDAA 491 (1229)
Q Consensus 428 l~~f~~~--------------~~~~~WHG~cLaLAEL~rrgll~p~~L~~--vv~~v~~aL~fd~rrg~~SvGs~VRDAA 491 (1229)
++...++ .++.+|||+++.+| |+.-|. --+.+ +.|++.|+++|+.+-|+.+.|.+||||+
T Consensus 289 i~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~---id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss 364 (993)
T COG5234 289 IELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGL---IDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSS 364 (993)
T ss_pred HHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccc---cchhhhhhhhheccccceeehheeeeccceeeccc
Confidence 8766543 25789999999988 665443 34455 7799999999999999999999999999
Q ss_pred hHHHHHhhcccCccchHHHHHHHHHHHHHH-HhcCCCchhhhhHHHHHHHhhccCCCCCCCccceeeeceeecccchhhH
Q 000911 492 AYVCWAFGRAYCHTDMRNILEQIAPHLLTV-ACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSY 570 (1229)
Q Consensus 492 Cyv~WAlaRay~~~~l~~~~~~la~~Lv~~-a~FDrevniRRaAsAAfQE~VGR~G~~phGI~Iv~~~DyfaV~~r~~ay 570 (1229)
||++|||.|+|+.+..+. +|....+|++. |+||+|+||||||.||+||.+|||-..|.|-.++..++|++|.+.++|+
T Consensus 365 ~f~vWs~~r~~S~s~~~~-lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslIN~~sv~r~s~cs 443 (993)
T COG5234 365 CFFVWSFYRCYSKSAIEG-LQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLINYVSVTRISNCS 443 (993)
T ss_pred ceeeeeeeeccccccchh-HHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhccceecchhhhcc
Confidence 999999999998765555 77766666665 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccChHH--HHHHHhhcccchh--------------c------cC-CcCCC----ChhHHHHHHHHHHHHH
Q 000911 571 LHVAVFIAQYEGYLYP--FVDELLYNKICHW--------------L------TP-FTLST----DLCTRHGATLAAGEVV 623 (1229)
Q Consensus 571 l~va~~vA~~~~Y~~~--li~hLl~~Kl~HW--------------l------l~-~~~s~----dl~~RHGalLalaei~ 623 (1229)
-.+...+|.|+.++.. ..+..+-..+.|| + +| ...+. ....-.|+.. ++.++
T Consensus 444 g~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~~~~~p~yl~~Il~k~~sdfi~~~~i-l~~~~ 522 (993)
T COG5234 444 GDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKYPKELPIYLPPILDKLSSDFIFGYTI-LASII 522 (993)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhhccccHHHHhcCcccCchhhhHHhhhCchhhhcchhh-HHHHH
Confidence 9999999988766655 4444333456699 1 11 00000 0123445555 66666
Q ss_pred HHHhcccccCChhHHHHHHh-hhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchH
Q 000911 624 LALCKYDYALPADKQKIVAG-IVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQ 702 (1229)
Q Consensus 624 ~al~~~~~~~~~~~~~~i~~-i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~ 702 (1229)
..|. .+.+-+.+.+|.. |.+..-+-++..| + +.+-....|+-........+++.-...-.++.
T Consensus 523 k~F~---~~~~~~rihei~~~i~q~kIkl~i~~~---------~----~r~f~d~~~~f~~F~~~~~~vi~g~~D~~~e~ 586 (993)
T COG5234 523 KGFL---FPFDINRIHEILSHIQQTKIKLGILKG---------I----QRIFADDIRVFRAFFSEAFSVIIGAIDLQEET 586 (993)
T ss_pred HHhc---CccCCccHHHHHHHHHHhheeecCChH---------H----HHHhcccchHHHHHHHHHHHHHhhhhhhhHhh
Confidence 6663 2334444555543 3333222222111 0 00001111111111111111111111111122
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcC--CCchhhhhHHHHHhhcCChHhh-hhhHHHHHHHHhhhcccC
Q 000911 703 IQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT--DPNPAIRRGSALALGVLPYELL-ANSWRDVLLKLCSCCLIE 779 (1229)
Q Consensus 703 i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~--~~~~~~r~G~alaLG~lp~~~l-~~~~~~il~~L~~~~~~~ 779 (1229)
+.+-.+++.+-+.. +. ...+.++..+.... +....+|--++..=| .|+..+ .+..+++.+.+.+.- .
T Consensus 587 ~idiVs~~~~~ll~--~~-----~~p~~~~~~~~~~v~~~~~~~ariv~si~~~-t~sli~~~~~qek~c~l~~~~y--p 656 (993)
T COG5234 587 IIDIVSDAYSVLLK--FD-----DMPETLEVLLDYIVKCSTSKEARIVYSILQN-TPSLIISFRYQEKICKLLLDIY--P 656 (993)
T ss_pred HHHHhcchHHhhhh--cc-----ccHHHHHHHHHHHHhccchhHHHHHHHHhcc-CchhhhcCccHHHHHHHHHHhh--h
Confidence 44444555554432 11 11223333333321 222223332222211 122211 122233333222110 0
Q ss_pred CCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHh
Q 000911 780 ENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVD 859 (1229)
Q Consensus 780 ~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~ 859 (1229)
.- . .-.|..-+.....-.....+. ..+-.++..+.+++||+||++|.|||||||||..||+
T Consensus 657 ~L-~---~~~~s~~I~~~~h~~V~~t~~---------------~S~sie~fr~~iln~l~nY~~d~rGDVgs~iR~~a~k 717 (993)
T COG5234 657 QL-H---SIDYSAPIANALHNIVPFTYE---------------KSESIEEFRKEILNVLSNYLTDTRGDVGSWIRKPAMK 717 (993)
T ss_pred hh-c---ccccccchhhhhhcchhhhcc---------------ccccHHHHHHHHHHHHhhhccccccchhHHHHHHHHH
Confidence 00 0 000111111111100001111 1234678889999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCC
Q 000911 860 GLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIF 939 (1229)
Q Consensus 860 ~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~ 939 (1229)
.+.+++ .. |+. ..++ .++||.+||+|.+|..|-.++..+.-+....
T Consensus 718 lm~SfL--~k--D~~----------------------~~~~--------y~iR~~~dki~~lR~l~yqa~eqI~v~~~s~ 763 (993)
T COG5234 718 LMSSFL--VK--DSS----------------------GKKL--------YIIRQTFDKIDSLRGLAYQALEQIRVHYLSR 763 (993)
T ss_pred HHHHHh--hc--ccc----------------------CCch--------hHHHHhhcccHHHHhhhhhhhhheeeehhhh
Confidence 999853 22 211 1111 6899999999999999999888887554322
Q ss_pred CC-CcchHHHhhhcCCCcccCcCCCCChhHHHhhhcCchhhHHHHhhcceee-cccCccchHHHHHHHHHHHHhcccccc
Q 000911 940 VP-IPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVIS-IGGLQESLRKASISALLEYLQAGETED 1017 (1229)
Q Consensus 940 ~p-ip~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~~y~~~ll~GLv~S-~Gglteslvk~S~~aL~~yl~~~~~~~ 1017 (1229)
+- .-+.+-+...|.+...++=.. .-..-.+|+.+|.-...-..||.++ +.|+..++......+-+.|-++++ +
T Consensus 764 ~~~~~~~~g~~~~fr~g~~vd~g~---l~~~~~~Ll~~~nsf~~~f~~l~~~~~~~lg~Dla~~~~s~~ia~s~~l~--d 838 (993)
T COG5234 764 RCEALTNIGNRISFRNGPNVDGGV---LNELNISLLEIPNSFLQAFYGLTVFTADGLGSDLAVKCFSFYIAYSYQLE--D 838 (993)
T ss_pred hhhhhccccchheeecCCCCChhh---hccccchHHhhhHHHHHHHhcCChhhhhccccchhhhhhHHHHHHHHhhh--h
Confidence 11 112222233333322111100 0011247888888888889999877 788888888777777677665221 1
Q ss_pred chhcchHHHHHHHHHHHHHHhhcCCCceeccHHHHHHHHHhccccccccCCchhHHHHHHHHHHHH-HHccCChHHHHHH
Q 000911 1018 LDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVE-LKATKDFSKLYAG 1096 (1229)
Q Consensus 1018 ~~~~~~~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~Ll~~g~f~~~~~~~~~~~~~l~~l~~~e-~~~sk~v~kL~~~ 1096 (1229)
+.++...+ ......|.-.--.+.|++.|.++.. +.|||-+..- ..+....+.. ...|+.+.-+ .
T Consensus 839 --~~k~~~~r-Gmr~~tI~ss~~~c~~f~~~Imes~----~~~c~p~f~v------~g~s~~~y~~~~l~C~s~~~~--I 903 (993)
T COG5234 839 --SFKKSNSR-GMRYITILSSEDECARFYFPIMESF----AYGCFPDFQV------KGMSKAIYIVQALTCKSPGGL--I 903 (993)
T ss_pred --hccccccC-CceeeeeccchHHHHHHHHHHHhcc----ceeeccchhh------ccchhhhhceeeeecCCCccc--h
Confidence 11110000 0112222222234456777777754 4566632211 1122222211 2334544432 3
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhcCCChhhh-HHHHHHHHHHHHhcCCCcchhhHHHHHhhhhhcCCCCchh---Hh
Q 000911 1097 IAILGYIASVSDPISTRAFSYLLNFLGHRFPKIR-KASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMN---VV 1172 (1229)
Q Consensus 1097 i~v~~~l~~~~~~~~~~a~~~L~~lL~H~~PkVR-~~~Ae~lY~~Ll~~~d~~~~e~~d~~~~~L~~tdW~~~~~---~~ 1172 (1229)
+++|.-+. .-+..+++.=..++.+|--++| -+.+.+.|.. +.+ ... -....+++.|..-+|.-++. .+
T Consensus 904 ~~~~~~l~----~S~~h~~~~nA~~~l~~ii~~R~lal~~~eya~--~~~-~~~-~~~Nv~lqkl~ql~~~~~V~~~~~~ 975 (993)
T COG5234 904 LELYRTLF----LSRHHALKYNANLLLNPIIKVRYLALDTLEYAK--SIG-LLT-FLPNVLLQKLLQLDWFVPVSQATFV 975 (993)
T ss_pred hhHhHHHH----HHHHHHHhhcccccccHHHHHHHHHHHHHHhhc--ccc-eee-eccHHHHHHHHHHhccccchHHHHH
Confidence 34444433 2255566665567888888999 5555566653 211 110 01235688999999986544 66
Q ss_pred HHHHHHHHHHh
Q 000911 1173 KHQRLELYNLA 1183 (1229)
Q Consensus 1173 r~~r~~l~~l~ 1183 (1229)
+..||+.-++.
T Consensus 976 ~q~~~~~~~~~ 986 (993)
T COG5234 976 KQLRNIIQKQI 986 (993)
T ss_pred HHHHHHHHHHH
Confidence 77777765544
No 3
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=100.00 E-value=8.1e-38 Score=334.41 Aligned_cols=188 Identities=40% Similarity=0.654 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCCCC-CcchHHHhhhcCCCc--ccCcCCCCChhHHHhhhcCc
Q 000911 900 ANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-IPHREKLEEIVPNEA--DLNWGVPAFSYPRFVHLLRF 976 (1229)
Q Consensus 900 ~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~p-ip~~~~L~~i~~~~~--~~~w~~~~~~fp~~~~LL~~ 976 (1229)
+++++++|++|+||++|||||||.+|+.+|+++++...+++| +|++++|.++|+.+. +.+|..+.++||++++||++
T Consensus 2 ~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~ 81 (193)
T PF12612_consen 2 PELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL 81 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhcc
Confidence 678999999999999999999999999999999988777889 999999999999876 47899999999999999999
Q ss_pred hhhHHHHhhcceeecccCccchHHHHHHHHHHHHhccccccchhcchHHHHHHHHHHHHHHhhcCCCceeccHHHHHHHH
Q 000911 977 SCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESL 1056 (1229)
Q Consensus 977 ~~y~~~ll~GLv~S~Gglteslvk~S~~aL~~yl~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~L 1056 (1229)
|+|++++++|||+||||+|||++++|+.||++|+++. .. +++.+..++.+|+++|++|.++|||+||+|+|+++|
T Consensus 82 ~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~--~~---~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~L 156 (193)
T PF12612_consen 82 PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLREL--SD---SPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFL 156 (193)
T ss_pred HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHh--hc---CHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHH
Confidence 9999999999999999999999999999999999732 22 677899999999999999999999999999999999
Q ss_pred HhccccccccCCc-hhHHHHHHHHHHHHHHccCChHH
Q 000911 1057 FSKRIFLNMEVHT-PIFCAGVLDSLAVELKATKDFSK 1092 (1229)
Q Consensus 1057 l~~g~f~~~~~~~-~~~~~~l~~l~~~e~~~sk~v~k 1092 (1229)
|++|+|+...... .+|+++|+.++++|++|||||+|
T Consensus 157 l~~~~~~~~~~~~~~~~~~~L~~~~~~e~~~s~nv~k 193 (193)
T PF12612_consen 157 LSSGVFDSLPEDSDSPFLRKLFDLVQKEHKKSKNVQK 193 (193)
T ss_pred HhCcchhcccccccchHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999533221 17899999999999999999986
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.9e-06 Score=109.44 Aligned_cols=383 Identities=18% Similarity=0.210 Sum_probs=229.7
Q ss_pred CCCchhHHHhh----hhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCCCCccchHHHHHH
Q 000911 395 DTDTVVRWSAA----KGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVK 470 (1229)
Q Consensus 395 d~dT~VRwsaA----KglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p~~L~~vv~~v~~ 470 (1229)
..|.-||=-|| |=+.|+-.+|+.+--.++-.++|+.+.....+..=|..|=++||++|.-+ |+.-|++++.+.+
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l--~e~WPell~~L~q 125 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDL--PEKWPELLQFLFQ 125 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHH
Confidence 34566665555 33334445577777778888888888666667777999999999999764 6688999999966
Q ss_pred hheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHH----HHh-----
Q 000911 471 ALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF----QEN----- 541 (1229)
Q Consensus 471 aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAf----QE~----- 541 (1229)
+. +|.-.+.|-+|=|++|++.+.++. .+.||+..+ ..|+..++=|++-++|=+|.-|+ +.+
T Consensus 126 ~~--------~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~l-~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 126 ST--------KSPNPSLRESALLILSSLPETFGN-TLQPHLDDL-LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred Hh--------cCCCcchhHHHHHHHHhhhhhhcc-ccchhHHHH-HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 64 466677899999999999999884 567777554 56777888999999997665443 222
Q ss_pred -hccC-CCCCCCccceeee-ceeecccchhhHHHHHHHHhccccChHHHHHHHhhcc------------c----------
Q 000911 542 -VGRQ-GNYPHGIDIVNTA-DYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNK------------I---------- 596 (1229)
Q Consensus 542 -VGR~-G~~phGI~Iv~~~-DyfaV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~K------------l---------- 596 (1229)
+-+. ..+|-.|.+++.+ ++=-..+-..+|-.....+...+.+..+.++.+++.. +
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 2333 3466555433321 1111111122222221111122222222222222200 0
Q ss_pred ---------------------------------chh-----------------------------------------ccC
Q 000911 597 ---------------------------------CHW-----------------------------------------LTP 602 (1229)
Q Consensus 597 ---------------------------------~HW-----------------------------------------ll~ 602 (1229)
..| +-.
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~ 355 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEA 355 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH
Confidence 234 122
Q ss_pred CcCCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCch
Q 000911 603 FTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPE 682 (1229)
Q Consensus 603 ~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~ 682 (1229)
+++|.+.-.||.+++|++.+..+-++. ....+.+|++.+.. .++. .---+|-|+|..|..+|..-.|.-.
T Consensus 356 ~l~S~~w~~R~AaL~Als~i~EGc~~~-------m~~~l~~Il~~Vl~--~l~D-phprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 356 MLQSTEWKERHAALLALSVIAEGCSDV-------MIGNLPKILPIVLN--GLND-PHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HhcCCCHHHHHHHHHHHHHHHcccHHH-------HHHHHHHHHHHHHh--hcCC-CCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 456888999999999999998765321 22233333333321 1221 1224899999999988864333322
Q ss_pred h-HHHHHHHHHHhhc-CCCchHHHHHHHHHHHHHHHHhhccCCcchh----hhhHHHHHhhc-CCCchhhhhHHHHHhhc
Q 000911 683 K-TKRSLLDTLNENL-RHPNSQIQNAAVKALKPFVQTYMVAADSGVV----GGISLKYMEQL-TDPNPAIRRGSALALGV 755 (1229)
Q Consensus 683 ~-~~~~~~~~l~~~L-~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~----~~ii~~~~~~l-~~~~~~~r~G~alaLG~ 755 (1229)
+ ..++....|-..+ +..+..||..|+.|+-.|+.. .++... +.++.+.+..| ++..+..+.+...|+|+
T Consensus 426 k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~----~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIas 501 (1075)
T KOG2171|consen 426 KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE----CDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIAS 501 (1075)
T ss_pred HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 2 1122222222222 445568999999999877764 222222 34444322233 57888899999999998
Q ss_pred CChH---hhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhc
Q 000911 756 LPYE---LLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLT 805 (1229)
Q Consensus 756 lp~~---~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~ 805 (1229)
+-.- .+.++++.+...|.+...-.. .+...+-|...+.+++-+-.-+|
T Consensus 502 vA~AA~~~F~pY~d~~Mp~L~~~L~n~~--~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 502 VADAAQEKFIPYFDRLMPLLKNFLQNAD--DKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHHHhCCC--chhhHHHHhhHHHHHHHHHHHhh
Confidence 7432 234566666666655433221 23458899999999888776666
No 5
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.91 E-value=0.18 Score=64.30 Aligned_cols=437 Identities=18% Similarity=0.212 Sum_probs=254.7
Q ss_pred hHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhc-CCCC
Q 000911 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARR-GLLL 457 (1229)
Q Consensus 379 ~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rr-gll~ 457 (1229)
|+-=+.+...++..|...---||=-|-=+||-++...+.++-.++++.+++-+.+.....+..+..-+|++++|. |-=.
T Consensus 169 ~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~ 248 (1233)
T KOG1824|consen 169 PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRF 248 (1233)
T ss_pred cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchh
Confidence 444567788888999999999999999999999999999999999999999998887788888999999999997 4445
Q ss_pred CCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCch--------
Q 000911 458 PSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVN-------- 529 (1229)
Q Consensus 458 p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevn-------- 529 (1229)
-++++.++|.+.+-..-.+. ----.|.+.==++=+|-|+ .|.++-||+..|-.-++----|||+.|
T Consensus 249 ~~h~~~ivp~v~~y~~~~e~-----~dDELrE~~lQale~fl~r-cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed 322 (1233)
T KOG1824|consen 249 GSHLDKIVPLVADYCNKIEE-----DDDELREYCLQALESFLRR-CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDED 322 (1233)
T ss_pred hcccchhhHHHHHHhccccc-----CcHHHHHHHHHHHHHHHHh-ChhhhcccchHHHHHHHHHhccCCCCCCCCccchh
Confidence 66789999999766543321 1233555555667777775 567888999999999999999999875
Q ss_pred -------------------------hhhhHHHHHHHhh-ccCCCCCCCccceeeeceeecccchhhHHHHHHH-Hhcccc
Q 000911 530 -------------------------CRRAAAAAFQENV-GRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVF-IAQYEG 582 (1229)
Q Consensus 530 -------------------------iRRaAsAAfQE~V-GR~G~~phGI~Iv~~~DyfaV~~r~~ayl~va~~-vA~~~~ 582 (1229)
+||||.-++-=.| -|+-..| | -|..+++. |++|.|
T Consensus 323 ~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~---------~---------~~q~l~p~lI~RfkE 384 (1233)
T KOG1824|consen 323 AMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLP---------D---------FYQTLGPALISRFKE 384 (1233)
T ss_pred hhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHH---------H---------HHHHhCHHHHHHHHH
Confidence 6888877765443 2223332 2 23333332 234421
Q ss_pred ---Ch-----HHHHHHHhhc-ccchhc-----------------cC------------CcCCCChhHHHHHHHHHHHHHH
Q 000911 583 ---YL-----YPFVDELLYN-KICHWL-----------------TP------------FTLSTDLCTRHGATLAAGEVVL 624 (1229)
Q Consensus 583 ---Y~-----~~li~hLl~~-Kl~HWl-----------------l~------------~~~s~dl~~RHGalLalaei~~ 624 (1229)
-- ...+.-|.+. ....|+ +. ...+..+-+|.|+++-+.|++.
T Consensus 385 REEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~ 464 (1233)
T KOG1824|consen 385 REENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELIN 464 (1233)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 11 1112222111 111221 11 1113334578888888888887
Q ss_pred HHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchh-HHHHHHHHHHhhcCCCchHH
Q 000911 625 ALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEK-TKRSLLDTLNENLRHPNSQI 703 (1229)
Q Consensus 625 al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~-~~~~~~~~l~~~L~~~~~~i 703 (1229)
.++.. ..+.+..++|.+.-.=-=+.-...+...+...++..+.... |--.+ .....-..+-.+...|--.|
T Consensus 465 ~lp~~-------l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~-p~~fhp~~~~Ls~~v~~aV~d~fyKi 536 (1233)
T KOG1824|consen 465 VLPGA-------LAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHP-PEVFHPHLSALSPPVVAAVGDPFYKI 536 (1233)
T ss_pred hCcch-------hhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCC-hhhcccchhhhhhHHHHHhcCchHhh
Confidence 76432 23344445555431100012234455566666666555332 21111 11122222222222221111
Q ss_pred HHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCC
Q 000911 704 QNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPE 783 (1229)
Q Consensus 704 ~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~ 783 (1229)
+++|+ .+-.+|++-++...+... .++=| .+.+++++-.... . ..
T Consensus 537 ---saEAL-----------------~v~~~lvkvirpl~~~~~------~d~~~------~v~~m~~~tl~rL--~--a~ 580 (1233)
T KOG1824|consen 537 ---SAEAL-----------------LVCQQLVKVIRPLQPPSS------FDASP------YVKTMYDCTLQRL--K--AT 580 (1233)
T ss_pred ---hHHHH-----------------HHHHHHHHHhcccCCCcc------CCCCh------hHHHHHHHHHHHH--h--cc
Confidence 22333 233344444432111111 11112 2223333222111 1 15
Q ss_pred CccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhc-cccCCCCCCcchHHHHHHHHhHHH
Q 000911 784 DRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKAL-DDYSVDNRGDVGSWVREAAVDGLE 862 (1229)
Q Consensus 784 ~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L-~DYT~D~RGDVGSwVReaam~~l~ 862 (1229)
+.|-|.|-.||.++++++-++|-. .......++..|++-| |+- .|.+|.+|+.
T Consensus 581 d~DqeVkeraIscmgq~i~~fgD~---------------l~~eL~~~L~il~eRl~nEi-----------TRl~AvkAlt 634 (1233)
T KOG1824|consen 581 DSDQEVKERAISCMGQIIANFGDF---------------LGNELPRTLPILLERLGNEI-----------TRLTAVKALT 634 (1233)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhh---------------hhhhhHHHHHHHHHHHhchh-----------HHHHHHHHHH
Confidence 678999999999999998887622 1233455666666555 333 4999999997
Q ss_pred HHHHHhhccCCCCCCCCCccccccCCCCccccccccC-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 000911 863 ICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFD-ANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNK 936 (1229)
Q Consensus 863 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~ 936 (1229)
.+. . .+-.++ ....++++.-+++=.---.+++|..-..++-.++.+.
T Consensus 635 ~Ia---~------------------------S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~ 682 (1233)
T KOG1824|consen 635 LIA---M------------------------SPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNY 682 (1233)
T ss_pred HHH---h------------------------ccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 2 112222 3344555655555555567888888888888887775
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.52 Score=61.73 Aligned_cols=655 Identities=18% Similarity=0.186 Sum_probs=340.5
Q ss_pred HHHHhh-hhcCCCchHhHHhhHHHHHHHHHhhcccCCCChhHHhhhhHHHHHhheeeeeeecccceeecCCCCccCHHHH
Q 000911 55 SIMDKY-QEQGQLVEPYLENIVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPHQVSDLELA 133 (1229)
Q Consensus 55 ~ild~y-QEqP~LLDp~Le~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~lY~l~KVRG~K~i~~~fPhev~~Le~v 133 (1229)
..++++ .-.|.+|-|||+.+|.--+...+++......+ +.+-.+|-.+++. -.+.+-+.=|--...+..+
T Consensus 228 ~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R--------~~ALe~ivs~~e~-Ap~~~k~~~~~~~~lv~~~ 298 (1075)
T KOG2171|consen 228 EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIR--------HLALEFLVSLSEY-APAMCKKLALLGHTLVPVL 298 (1075)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHH--------HHHHHHHHHHHHh-hHHHhhhchhhhccHHHHH
Confidence 333333 45799999999999999998887655444444 4555555555555 2222222212111133444
Q ss_pred HHHHHhcccC----ccc-------cc---------------ccc--------------CCcchhHHHHHHHHHHHHHhhc
Q 000911 134 VSLLEKCHDT----ASV-------TS---------------LRQ--------------ESTGEMEAKCVILLWLSILVLV 173 (1229)
Q Consensus 134 l~~L~~~~~~----~s~-------~~---------------~~~--------------~~~~~We~rYvlLLWLS~Lvl~ 173 (1229)
+.+....... ++. ++ +.. -...+|..|.--|+=||.+.
T Consensus 299 l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~-- 376 (1075)
T KOG2171|consen 299 LAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIA-- 376 (1075)
T ss_pred HHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--
Confidence 4444332110 000 00 000 01356999998888888876
Q ss_pred CCCCCCCCCcccccccCCCCCChhHHHHHHHHHHHhhhcC-CchhhHHHHHHHHHhc--CCChHHHHHHHHHHHH-Hhcc
Q 000911 174 PFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNA-GPMRTIAGLLLAKLLT--RPDMPTAFASFVEWTH-EVLS 249 (1229)
Q Consensus 174 PFdLs~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~-~k~r~aAa~LLsrl~t--R~D~~~~l~~fl~w~~-~~l~ 249 (1229)
++.. ..-.+...+|+++...+|..| ...|-||...+..+-| -|++++...+-+--++ ..+.
T Consensus 377 -------EGc~--------~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld 441 (1075)
T KOG2171|consen 377 -------EGCS--------DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD 441 (1075)
T ss_pred -------cccH--------HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc
Confidence 2110 012246678888888888888 5788888888888766 3555554222221111 1111
Q ss_pred cccc----------------ccc-c--hHHHHH--------------------HHHHHHHHHHhcChhhhhhhhHHHHHh
Q 000911 250 SVTD----------------DVM-N--HFRLLG--------------------VVEALAAIFKAGGRKVLLDVIPVVWND 290 (1229)
Q Consensus 250 ~~~~----------------~~~-~--~~~~~G--------------------~L~~La~ilK~g~r~~l~~~~~~i~~~ 290 (1229)
.... ..+ + .=++.| ++++++.+-- .--+.+.||.+++...
T Consensus 442 ~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~-AA~~~F~pY~d~~Mp~ 520 (1075)
T KOG2171|consen 442 STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD-AAQEKFIPYFDRLMPL 520 (1075)
T ss_pred ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-HHhhhhHhHHHHHHHH
Confidence 1000 000 0 012333 3344444422 1234567787777664
Q ss_pred hhhhhccCCCCCchhHHHHHHHHHHHHhhcccCCCcccccccccccccccccccccccccccccCccccccccccccCCC
Q 000911 291 ASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNC 370 (1229)
Q Consensus 291 ~~~l~~s~~~~~~~l~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1229)
...+-.+........+|--.+.++.-||..- .
T Consensus 521 L~~~L~n~~~~d~r~LrgktmEcisli~~AV-------------------G----------------------------- 552 (1075)
T KOG2171|consen 521 LKNFLQNADDKDLRELRGKTMECLSLIARAV-------------------G----------------------------- 552 (1075)
T ss_pred HHHHHhCCCchhhHHHHhhHHHHHHHHHHHh-------------------h-----------------------------
Confidence 3333332211122333333355555555220 0
Q ss_pred CCCCCCCchHHHHHHHHHHHhc---cCCCCchhHHHhhhhhhhhHhhcChhhH---HHHHHHHHhhcC--C-------C-
Q 000911 371 PEDEGMDVPDILEEIIEILLSG---LRDTDTVVRWSAAKGIGRITSCLTSSLS---EEVFSSVLELFS--P-------G- 434 (1229)
Q Consensus 371 ~~~ed~dv~e~vE~iI~~LL~~---L~d~dT~VRwsaAKglgrI~~rL~~~~a---~qVv~~vl~~f~--~-------~- 434 (1229)
.+ ...+..|++|+.++.. ..|-|-+.|-...-..+|++.-|-++|+ ..|+..++..-. + .
T Consensus 553 --ke--~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d 628 (1075)
T KOG2171|consen 553 --KE--KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEED 628 (1075)
T ss_pred --hh--hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchh
Confidence 01 2246678888888887 7788999999999999999999999876 567777765321 1 0
Q ss_pred ----CCCCch---------------------hhHHHHHHHHHhc-CCCCCCCccchHHHHHHhheEeeccccccCCcccc
Q 000911 435 ----EGDGSW---------------------HGGCLALAELARR-GLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVR 488 (1229)
Q Consensus 435 ----~~~~~W---------------------HG~cLaLAEL~rr-gll~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VR 488 (1229)
..+..| -.+|.+|.+++.. +.-...+..++++..+..|.|.---| ||
T Consensus 629 ~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdg-------VR 701 (1075)
T KOG2171|consen 629 EEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDG-------VR 701 (1075)
T ss_pred hhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhH-------HH
Confidence 012222 2489999999875 22334456667775566666666554 99
Q ss_pred chhhHHHHHhhcccCc------cchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhhccCCCCCCCccceeeeceee
Q 000911 489 DAAAYVCWAFGRAYCH------TDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFS 562 (1229)
Q Consensus 489 DAACyv~WAlaRay~~------~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~VGR~G~~phGI~Iv~~~Dyfa 562 (1229)
=||+=..|-+.|++.. ..+++..+.+...++.+.-=.+|.-+==+=--+|=+.+==.|
T Consensus 702 ~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G---------------- 765 (1075)
T KOG2171|consen 702 KAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMG---------------- 765 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcC----------------
Confidence 9999999999998653 333444444444444333322222221111111111111111
Q ss_pred cccchhhHHHHHHHHhccccChHHHHHHHhhcccchhc-------cCCcCCCChhH-----HHHH--HHHHHHHHHHHhc
Q 000911 563 LSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWL-------TPFTLSTDLCT-----RHGA--TLAAGEVVLALCK 628 (1229)
Q Consensus 563 V~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWl-------l~~~~s~dl~~-----RHGa--lLalaei~~al~~ 628 (1229)
.+.=.+.+.+.++..+...-..|-. -......|... ..++ +=.+.+++.++-+
T Consensus 766 -------------~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k 832 (1075)
T KOG2171|consen 766 -------------DNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAK 832 (1075)
T ss_pred -------------cccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 1111235555555555544444430 00000011110 1111 1133444444432
Q ss_pred ccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH---HHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHH
Q 000911 629 YDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSR---FIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQN 705 (1229)
Q Consensus 629 ~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~---lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~ 705 (1229)
.. .......+.++.|.+. +++.++.+-.-.-|+|. +|+-+..... .....+.-.+-+++..++.+|+.
T Consensus 833 ~~---k~~f~p~f~~~~p~iv--~~l~~~~~~~r~~av~~~~d~ie~~~~a~~----~~~~~~~p~~~~~~~d~~pEVRq 903 (1075)
T KOG2171|consen 833 AL---KGSFLPFFENFLPLIV--KLLKSKKTVARQWAVCIFDDLIEGCGEASA----KYKERFLPLVLEALQDSDPEVRQ 903 (1075)
T ss_pred Hc---cccccHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHhcccccc----hHHHHHHHHHHHHcCCCCHHHHH
Confidence 21 1222223333333332 22333333334447775 4444443332 34567888888899999999999
Q ss_pred HHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcC---CCchhhhhHHHHHhhcCChHhhhh----hHHHHHHHHhhhccc
Q 000911 706 AAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT---DPNPAIRRGSALALGVLPYELLAN----SWRDVLLKLCSCCLI 778 (1229)
Q Consensus 706 aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~---~~~~~~r~G~alaLG~lp~~~l~~----~~~~il~~L~~~~~~ 778 (1229)
+|+..+..+++- ....-.......+......++ ..++-.++.+--|.|++-+.+... ...+++..+.+..
T Consensus 904 aAsYGiGvlaq~-~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~L-- 980 (1075)
T KOG2171|consen 904 AAAYGMGVLAQF-GGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWL-- 980 (1075)
T ss_pred HHHHHHHHHHHH-cCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhC--
Confidence 999999877663 221100111333333333333 234556777778888887766532 1667777776653
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcch
Q 000911 779 EENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVG 850 (1229)
Q Consensus 779 ~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVG 850 (1229)
|...|-|.=.-...-|..+++.- .|.- +.....+...|+..+..++++=.+..|---|
T Consensus 981 ---Pl~~D~eEa~~iy~~l~~L~e~n----~p~v-------~~~~n~~ip~i~~v~~~~~~~~~~~~~~~~~ 1038 (1075)
T KOG2171|consen 981 ---PLKEDKEEAVPIYTFLSDLYESN----HPIV-------LGPNNQNIPKILSVCAESLADKKIEPRSTLA 1038 (1075)
T ss_pred ---CCccchhhhhhHHHHHHHHHHhC----CCee-------eCCCcccchHHHHHHHhhhhccCCCccchHH
Confidence 23445555555666666665421 1100 0112357888999999998887665554444
No 7
>PRK09687 putative lyase; Provisional
Probab=97.57 E-value=0.0044 Score=70.96 Aligned_cols=257 Identities=17% Similarity=0.110 Sum_probs=143.9
Q ss_pred HHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCCCCccc
Q 000911 384 EIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPK 463 (1229)
Q Consensus 384 ~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p~~L~~ 463 (1229)
..++.|+..|.|.|+.|||+|++.|+.+-. .+++..+..++...
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~----------------------------- 66 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSK----------------------------- 66 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCC-----------------------------
Confidence 346778888899999999999999886642 23444443333222
Q ss_pred hHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhhc
Q 000911 464 VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVG 543 (1229)
Q Consensus 464 vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~VG 543 (1229)
...||-+|.+++.-+.+...+ ....+..|...+.-|++-.+|++|..|+-++ |
T Consensus 67 --------------------d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~-~ 119 (280)
T PRK09687 67 --------------------NPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHR-C 119 (280)
T ss_pred --------------------CHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc-c
Confidence 224555555555554443221 1122333333467888999999988887543 2
Q ss_pred cCCCCCCCccceeeeceeecccchhhHHHHHHHHhccccChHHHHHHHhhcccchhccCCcCCCChhHHHHHHHHHHHHH
Q 000911 544 RQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVV 623 (1229)
Q Consensus 544 R~G~~phGI~Iv~~~DyfaV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGalLalaei~ 623 (1229)
..+. .+....+++|. ....+.+..+|-+++-|++++-
T Consensus 120 ~~~~----------------------------------~~~~~a~~~l~---------~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 120 KKNP----------------------------------LYSPKIVEQSQ---------ITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred cccc----------------------------------ccchHHHHHHH---------HHhhCCCHHHHHHHHHHHhccC
Confidence 2111 11111233322 1122346678888887776441
Q ss_pred HHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHH
Q 000911 624 LALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQI 703 (1229)
Q Consensus 624 ~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i 703 (1229)
+++.+..+. ..+.+ ..+ .+|.++..-+..+. ... ......|...|.+++..|
T Consensus 157 ----------~~~ai~~L~---~~L~d------~~~-~VR~~A~~aLg~~~-----~~~---~~~~~~L~~~L~D~~~~V 208 (280)
T PRK09687 157 ----------DEAAIPLLI---NLLKD------PNG-DVRNWAAFALNSNK-----YDN---PDIREAFVAMLQDKNEEI 208 (280)
T ss_pred ----------CHHHHHHHH---HHhcC------CCH-HHHHHHHHHHhcCC-----CCC---HHHHHHHHHHhcCCChHH
Confidence 233333322 22221 112 36666555554331 111 123333455568889999
Q ss_pred HHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCC
Q 000911 704 QNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPE 783 (1229)
Q Consensus 704 ~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~ 783 (1229)
+..|+.|+..+ ...+.+...++.++++. .+...+-|||.+...- .-..+..+.+ .
T Consensus 209 R~~A~~aLg~~-----------~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~----a~p~L~~l~~--------~ 263 (280)
T PRK09687 209 RIEAIIGLALR-----------KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDKT----LLPVLDTLLY--------K 263 (280)
T ss_pred HHHHHHHHHcc-----------CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCHh----HHHHHHHHHh--------h
Confidence 99999998542 11467777888887655 5778899999987432 1222333332 2
Q ss_pred CccHHHHHHHHHHHHH
Q 000911 784 DRDTEARVNAVRGLVS 799 (1229)
Q Consensus 784 ~~d~E~R~~av~sL~~ 799 (1229)
..|.+.|+-|+.+|.+
T Consensus 264 ~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 264 FDDNEIITKAIDKLKR 279 (280)
T ss_pred CCChhHHHHHHHHHhc
Confidence 3378899999988864
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.54 E-value=0.26 Score=68.79 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=79.5
Q ss_pred HHHH--HHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHH-HHHHHH-----
Q 000911 380 DILE--EIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCL-ALAELA----- 451 (1229)
Q Consensus 380 e~vE--~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cL-aLAEL~----- 451 (1229)
..|+ .+|..|++-|++.++.++=-|+++|..++..=+.+ ++..+.++|.... ..+.-.+| +|+.+.
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~----~I~~Lv~LLlsdd--~~~~~~aL~vLgnIlsl~~~ 597 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA----TISQLTALLLGDL--PESKVHVLDVLGHVLSVASL 597 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh----HHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcch
Confidence 4453 46778888888999999999999999997754433 4455556664332 23333222 232221
Q ss_pred ----hcCCCCCCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCC
Q 000911 452 ----RRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDRE 527 (1229)
Q Consensus 452 ----rrgll~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDre 527 (1229)
..|..-. ..+|.+.+=|. .|+ ..++-.||.+++.++.. +++.....+..=+..-++.-+...+
T Consensus 598 ~d~~~~g~~~~----ggL~~Lv~LL~----sgs----~~ikk~Aa~iLsnL~a~-~~d~~~avv~agaIpPLV~LLss~~ 664 (2102)
T PLN03200 598 EDLVREGSAAN----DALRTLIQLLS----SSK----EETQEKAASVLADIFSS-RQDLCESLATDEIINPCIKLLTNNT 664 (2102)
T ss_pred hHHHHHhhhcc----ccHHHHHHHHc----CCC----HHHHHHHHHHHHHHhcC-ChHHHHHHHHcCCHHHHHHHHhcCC
Confidence 1222112 23444433333 232 35677788888888873 4433333333333344444555677
Q ss_pred chhhhhHHHHH
Q 000911 528 VNCRRAAAAAF 538 (1229)
Q Consensus 528 vniRRaAsAAf 538 (1229)
..+||.|+-|+
T Consensus 665 ~~v~keAA~AL 675 (2102)
T PLN03200 665 EAVATQSARAL 675 (2102)
T ss_pred hHHHHHHHHHH
Confidence 77888888774
No 9
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=1.3 Score=57.79 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=46.1
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChH
Q 000911 692 LNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYE 759 (1229)
Q Consensus 692 l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~ 759 (1229)
+...+.|=+..|++.|+.|+..+...+.. ...+..+..+++..-+.+...|-|+.+|.|.+-..
T Consensus 549 ~t~Kv~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 549 LTKKVCHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 33346889999999999999997765422 12245566667666678888999999998876443
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.20 E-value=1.4 Score=56.68 Aligned_cols=220 Identities=14% Similarity=0.158 Sum_probs=143.9
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcC-CCchhhhhHHHHHhhcCChHhh-
Q 000911 684 TKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT-DPNPAIRRGSALALGVLPYELL- 761 (1229)
Q Consensus 684 ~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~-~~~~~~r~G~alaLG~lp~~~l- 761 (1229)
.....+.++-.-+..+...|+..|+-|+..+... .++..-.+++...+++|. ..+..+-|-++.+||++-+..-
T Consensus 171 fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~----~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 171 FHLSILKCLLPQLQSPRLAVRKKAITALGHLASS----CNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 3455666677777999999999999999988753 223334788888888885 5677778889999999865542
Q ss_pred --hhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccc-----------cCCchhhhHhhhhHH
Q 000911 762 --ANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLI-----------HSGEDEISLFHLIKN 828 (1229)
Q Consensus 762 --~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 828 (1229)
..+...++-.+.+-|..- +..|-|-|-.+++++...+.+-...-.|... +..|+.-. .. +
T Consensus 247 r~~~h~~~ivp~v~~y~~~~---e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd---~~-e 319 (1233)
T KOG1824|consen 247 RFGSHLDKIVPLVADYCNKI---EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD---TE-E 319 (1233)
T ss_pred hhhcccchhhHHHHHHhccc---ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC---Cc-c
Confidence 234555655555444221 3447899999999998776543222111100 00000000 00 1
Q ss_pred HHHHHHHHhccccCCCC----CCcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHH
Q 000911 829 EVMTSLFKALDDYSVDN----RGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLAT 904 (1229)
Q Consensus 829 ~v~~~Ll~~L~DYT~D~----RGDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1229)
.=-+-.+...+||.-|+ .-||-=.||.||.+++..++ . ...+++ +.+++
T Consensus 320 Ded~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~I--s------------------------SR~E~L-~~~~q 372 (1233)
T KOG1824|consen 320 DEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVI--S------------------------SRLEML-PDFYQ 372 (1233)
T ss_pred chhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHH--h------------------------ccHHHH-HHHHH
Confidence 11122345566665322 35776679999999999875 1 123445 67788
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCCCC
Q 000911 905 NLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP 941 (1229)
Q Consensus 905 ~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~p 941 (1229)
.+-..++.---|+=..|+..-..++..++.+..+.++
T Consensus 373 ~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~ 409 (1233)
T KOG1824|consen 373 TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIE 409 (1233)
T ss_pred HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcc
Confidence 8888899999999999999999999999887644444
No 11
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=1.4 Score=59.37 Aligned_cols=633 Identities=18% Similarity=0.197 Sum_probs=304.9
Q ss_pred HHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcC-hhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCC-CCC
Q 000911 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLT-SSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLL-LPS 459 (1229)
Q Consensus 382 vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~-~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll-~p~ 459 (1229)
--+.+.++..-|+|.+|-.|.+.|.-.|....-+. .+.-+++.+-+.....+. .-..-||+|++++...-|++- .+.
T Consensus 574 ~~~~~~~~~sll~~~~~~mr~~~a~~y~~~~~~~~~~e~~~~l~~~i~~~~~~~-~le~~hg~l~~~g~~~~~~la~~~t 652 (1702)
T KOG0915|consen 574 FSDKIEWLRSLLSNTSESMRESVAQLYGMASCALSDAESCSELSNLISNILQPK-KLEAQHGGLLAVGFTSARCLARIKT 652 (1702)
T ss_pred hhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhcccc-ccchhhheeeeeecccccchhhhhh
Confidence 34688899999999999999999999988776654 445566666666655444 337789999999999988872 222
Q ss_pred Cccch----HHHHHHh-----------------heEeecccc-------ccCCccccchhhH-------------HHHHh
Q 000911 460 SLPKV----VPVIVKA-----------------LHYDIRRGS-------HSVGSHVRDAAAY-------------VCWAF 498 (1229)
Q Consensus 460 ~L~~v----v~~v~~a-----------------L~fd~rrg~-------~SvGs~VRDAACy-------------v~WAl 498 (1229)
....+ +|..+++ +.+=-..+. +++|+.+|+=.-= +==.+
T Consensus 653 ~~~~i~~~a~~~~v~~v~~le~a~~l~s~~~~~~~~id~~~~i~~~~~~~~~~~~~~~~~~~~~sk~~s~~kv~~~glll 732 (1702)
T KOG0915|consen 653 VSKAITQIALPYLVNVVNSLEEAPLLASAAVEALSHIDKTGAIPNLVADSSLGTQVREDSQERLSKLLSGDKVQKFGLLL 732 (1702)
T ss_pred HHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHhhhccccccchhHhhhcccccccCCCccccccccccchhhhHHHHH
Confidence 21111 1222222 222111111 2445544442110 00011
Q ss_pred hcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHH--HHhhccC-CCCCCCccceeeeceeecccchhhHHHHHH
Q 000911 499 GRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF--QENVGRQ-GNYPHGIDIVNTADYFSLSSRVYSYLHVAV 575 (1229)
Q Consensus 499 aRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAf--QE~VGR~-G~~phGI~Iv~~~DyfaV~~r~~ayl~va~ 575 (1229)
.+--+++...++.+. + |=--+.+|++- +=.--| |+.+|-. +-.|-+++|.....|.++|--+|.-
T Consensus 733 ~~i~s~~~~~~~~e~-~--l~yl~~g~g~~----~~~~l~~~~l~~s~~~k~~~l~~~i~e~~~~~~~~~ds~~l----- 800 (1702)
T KOG0915|consen 733 QHICSSKASSKILEI-A--LGYLFSGSGDK----AEEILFAAGLALSFLWKQVPLTFDIGEAINYTALGTDSNFL----- 800 (1702)
T ss_pred hhhcChhhhhhHHHH-H--HhHhhcCCCCc----HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhcccchhhc-----
Confidence 111111112122111 1 11112233321 111111 2233332 4456677777777777777666543
Q ss_pred HHhccccChHHHHHHHhhcccchh---ccCCcCCCChhHHHHHHHHHHHHHHHHhcccccC--ChhHHHHHHhhhh----
Q 000911 576 FIAQYEGYLYPFVDELLYNKICHW---LTPFTLSTDLCTRHGATLAAGEVVLALCKYDYAL--PADKQKIVAGIVP---- 646 (1229)
Q Consensus 576 ~vA~~~~Y~~~li~hLl~~Kl~HW---ll~~~~s~dl~~RHGalLalaei~~al~~~~~~~--~~~~~~~i~~i~~---- 646 (1229)
++|.+++.++--++...-- +...+.+...+.|.....=+-.++..+.+..... .++.+..+...+.
T Consensus 801 -----e~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dE 875 (1702)
T KOG0915|consen 801 -----EEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDE 875 (1702)
T ss_pred -----ccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHH
Confidence 4555555544432211111 3345567888888877766666666554321110 1122211111111
Q ss_pred ---hhhhhhcccC------CchhhHHHH-HHHHHHHHhhcC---CCCchhHHHHHHHHHHhhc--CCCchHHHHHHHHHH
Q 000911 647 ---GIEKARLYRG------KGGEIMRSA-VSRFIECISLSF---VSLPEKTKRSLLDTLNENL--RHPNSQIQNAAVKAL 711 (1229)
Q Consensus 647 ---~~~~~~l~rg------~ggel~r~A-~c~lI~~ls~s~---~pl~~~~~~~~~~~l~~~L--~~~~~~i~~aA~~Al 711 (1229)
..-. || .|++-+.+. +-.|+..+...+ ..+.+++. ++.++. +.|+-. -...+
T Consensus 876 f~QDvAs----rGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTe-----lFq~G~Lg~Tp~Gg----~isTY 942 (1702)
T KOG0915|consen 876 FSQDVAS----RGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETE-----LFQEGTLGKTPDGG----KISTY 942 (1702)
T ss_pred HHHHHHh----cCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchh-----cccCCcCCCCCCCC----cchHH
Confidence 1100 22 223322222 222333332211 11111110 011110 111110 11334
Q ss_pred HHHHHHhhccCCcchhhhhHHHHHhhcC-CCchhhhhHHHHHhhcCChHh---hhhhHHHHHHHHhhhcccCCCCCCccH
Q 000911 712 KPFVQTYMVAADSGVVGGISLKYMEQLT-DPNPAIRRGSALALGVLPYEL---LANSWRDVLLKLCSCCLIEENPEDRDT 787 (1229)
Q Consensus 712 ~~l~~~y~~~~~~~~~~~ii~~~~~~l~-~~~~~~r~G~alaLG~lp~~~---l~~~~~~il~~L~~~~~~~~~~~~~d~ 787 (1229)
+.+|..-- .-..-.+|=+|.+..+ +..=..++|.|..+|++-... +.+++++++-.|.+- ++.+. .
T Consensus 943 KELc~LAS----dl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP~-----~ 1012 (1702)
T KOG0915|consen 943 KELCNLAS----DLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDPD-----K 1012 (1702)
T ss_pred HHHHHHHh----hcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCCc-----H
Confidence 44444311 0111366777776554 223346899999999986554 456777777767653 22222 1
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHHHH
Q 000911 788 EARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYI 867 (1229)
Q Consensus 788 E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~~l 867 (1229)
+--+|+++|..++-- |+ ..+....+++|++-|+.+|.+= ==-|||||.-||.+++
T Consensus 1013 ----~Vq~aM~sIW~~Li~----D~-------k~~vd~y~neIl~eLL~~lt~k--------ewRVReasclAL~dLl-- 1067 (1702)
T KOG0915|consen 1013 ----KVQDAMTSIWNALIT----DS-------KKVVDEYLNEILDELLVNLTSK--------EWRVREASCLALADLL-- 1067 (1702)
T ss_pred ----HHHHHHHHHHHHhcc----Ch-------HHHHHHHHHHHHHHHHHhccch--------hHHHHHHHHHHHHHHH--
Confidence 222356666666532 21 1344567788888888877431 1239999999999875
Q ss_pred hhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhH----HHHHHHHHH---HHHHhhc-cCCC
Q 000911 868 LCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMD----KLREAAAKV---LRRILYN-KTIF 939 (1229)
Q Consensus 868 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiD----rvR~~A~~~---l~~ll~~-~~~~ 939 (1229)
..+ +-+.+.+-+..++-++.==+| .||+.|-+. +..+.-- .+++
T Consensus 1068 -~g~---------------------------~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1068 -QGR---------------------------PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred -cCC---------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 311 123344555666666666665 466655333 2222211 1111
Q ss_pred CCCcchHHHhhhcCCCcccCcCCCCChhHHHhhhcCchh---hHHHHhhcceeecccCccchHHHHHHHHHH-HHhcccc
Q 000911 940 VPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSC---YSRVLLSGLVISIGGLQESLRKASISALLE-YLQAGET 1015 (1229)
Q Consensus 940 ~pip~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~~---y~~~ll~GLv~S~Gglteslvk~S~~aL~~-yl~~~~~ 1015 (1229)
-+....+.+-.+.|- -|... + +=..++ +.-..+.-|+=|+|+ .+++...-|+- +++. .
T Consensus 1120 ~~~~~~~~l~~iLPf----Ll~~g------i--ms~v~evr~~si~tl~dl~Kssg~----~lkP~~~~LIp~ll~~--~ 1181 (1702)
T KOG0915|consen 1120 NGAKGKEALDIILPF----LLDEG------I--MSKVNEVRRFSIGTLMDLAKSSGK----ELKPHFPKLIPLLLNA--Y 1181 (1702)
T ss_pred CcccHHHHHHHHHHH----HhccC------c--ccchHHHHHHHHHHHHHHHHhchh----hhcchhhHHHHHHHHH--c
Confidence 012223333333321 11100 0 002233 333455555556665 34444444432 2221 0
Q ss_pred ccchhcchHHHHHHHHHHHHHHhhcCCCc----eeccHHHHHHHHHhccccccccCCchhHHHHHHHHHHHHHHccCCh-
Q 000911 1016 EDLDARSSREYMLYNDILWVLQHYRRCDR----VIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDF- 1090 (1229)
Q Consensus 1016 ~~~~~~~~~l~~~~~~ll~il~~~~~~dR----v~vP~L~tl~~Ll~~g~f~~~~~~~~~~~~~l~~l~~~e~~~sk~v- 1090 (1229)
.. . .+.-+.-++..+..+=.+...+-| -.-|+++|++.++.. .| . ..++++.-.+.+.++++=+.
T Consensus 1182 s~-l-E~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~--iD----~--~vLeelip~l~el~R~sVgl~ 1251 (1702)
T KOG0915|consen 1182 SE-L-EPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINY--ID----I--SVLEELIPRLTELVRGSVGLG 1251 (1702)
T ss_pred cc-c-chHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHh--hh----H--HHHHHHHHHHHHHHhccCCCC
Confidence 10 0 122233333333333333333445 467999999999975 22 1 44566666666666666333
Q ss_pred HHHHHHHHHHHHhhc-CCc---hhHHHHHHHHHHHhcCCChhhhHHHHHHH
Q 000911 1091 SKLYAGIAILGYIAS-VSD---PISTRAFSYLLNFLGHRFPKIRKASAEQV 1137 (1229)
Q Consensus 1091 ~kL~~~i~v~~~l~~-~~~---~~~~~a~~~L~~lL~H~~PkVR~~~Ae~l 1137 (1229)
.|. .|-.+.+.|.+ ++. +..-+-++-+....-.|-+-|||+-|..+
T Consensus 1252 Tkv-g~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAm 1301 (1702)
T KOG0915|consen 1252 TKV-GCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAM 1301 (1702)
T ss_pred cch-hHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHH
Confidence 333 33344444443 221 34455566666778889999999988766
No 12
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.53 E-value=0.13 Score=68.12 Aligned_cols=140 Identities=21% Similarity=0.165 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcC
Q 000911 660 EIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT 739 (1229)
Q Consensus 660 el~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~ 739 (1229)
..+|.+++.-+..+....- .. ...|...+.+++..|+.+|+.||..+-. + ..++...+..++
T Consensus 756 ~~VR~~aa~aL~~~~~~~~----~~----~~~L~~ll~D~d~~VR~aA~~aLg~~g~------~----~~~~~~l~~aL~ 817 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGA----PA----GDAVRALTGDPDPLVRAAALAALAELGC------P----PDDVAAATAALR 817 (897)
T ss_pred HHHHHHHHHHHHHhccccc----hh----HHHHHHHhcCCCHHHHHHHHHHHHhcCC------c----chhHHHHHHHhc
Confidence 3567776665554432110 00 1223345677889999999888864411 1 233445666777
Q ss_pred CCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchh
Q 000911 740 DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDE 819 (1229)
Q Consensus 740 ~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~ 819 (1229)
+.+...|.+.+.|||.++..- .+..|+... .+.+...|+.|+.+|..+ .+.
T Consensus 818 d~d~~VR~~Aa~aL~~l~~~~-------a~~~L~~~L------~D~~~~VR~~A~~aL~~~------~~~---------- 868 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAADV-------AVPALVEAL------TDPHLDVRKAAVLALTRW------PGD---------- 868 (897)
T ss_pred CCChHHHHHHHHHHHhccccc-------hHHHHHHHh------cCCCHHHHHHHHHHHhcc------CCC----------
Confidence 888889999999999887421 223333332 234678999999999873 110
Q ss_pred hhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHH
Q 000911 820 ISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLE 862 (1229)
Q Consensus 820 ~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~ 862 (1229)
......|..+++|= =+.||.+|.++|.
T Consensus 869 --------~~a~~~L~~al~D~--------d~~Vr~~A~~aL~ 895 (897)
T PRK13800 869 --------PAARDALTTALTDS--------DADVRAYARRALA 895 (897)
T ss_pred --------HHHHHHHHHHHhCC--------CHHHHHHHHHHHh
Confidence 12345555666542 2449999998885
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.51 E-value=4.1 Score=57.70 Aligned_cols=542 Identities=18% Similarity=0.115 Sum_probs=259.9
Q ss_pred HHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChh-------hHHHHHHHHHhhcCCCC-CCCchhhH-HHHHHHHHhcC
Q 000911 384 EIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS-------LSEEVFSSVLELFSPGE-GDGSWHGG-CLALAELARRG 454 (1229)
Q Consensus 384 ~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~-------~a~qVv~~vl~~f~~~~-~~~~WHG~-cLaLAEL~rrg 454 (1229)
..|.-|+.-|++.+...|=.||+.|..++.-=..+ ....+|..+++++.+.. .+...|+. +.+|..|+...
T Consensus 99 GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~ 178 (2102)
T PLN03200 99 GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST 178 (2102)
T ss_pred CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc
Confidence 34555556667778999999999999998532112 12457788888876532 22334442 45888888754
Q ss_pred CCCCCC----c-cchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHH-HHHH-HHHHHHHHHhcCCC
Q 000911 455 LLLPSS----L-PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRN-ILEQ-IAPHLLTVACYDRE 527 (1229)
Q Consensus 455 ll~p~~----L-~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~-~~~~-la~~Lv~~a~FDre 527 (1229)
..+ + ...||.+++.|.- ++ ..+++.||.++-.++.... +... .++. ....|+-.---+.+
T Consensus 179 ---en~~~~IIeaGaVp~LV~LLsS----~d----~~lQ~eAa~aLa~Lass~e--e~~~aVIeaGaVP~LV~LL~sg~~ 245 (2102)
T PLN03200 179 ---DGFWSATLEAGGVDILVKLLSS----GN----SDAQANAASLLARLMMAFE--SSISKVLDAGAVKQLLKLLGQGNE 245 (2102)
T ss_pred ---cchHHHHHHcCCHHHHHHHHcC----CC----HHHHHHHHHHHHHHHcCCh--HHHHHHHHCCCHHHHHHHHccCCC
Confidence 222 1 3377888888831 21 2455555444444433322 2222 2221 12223222212456
Q ss_pred chhhhhHHHHHHHhhc----------cCCCCCCCccceeee------ceeecccchhhHHHHHHHHhccccChHHHHHHH
Q 000911 528 VNCRRAAAAAFQENVG----------RQGNYPHGIDIVNTA------DYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDEL 591 (1229)
Q Consensus 528 vniRRaAsAAfQE~VG----------R~G~~phGI~Iv~~~------DyfaV~~r~~ayl~va~~vA~~~~Y~~~li~hL 591 (1229)
..+|..|..|+..+.+ ..|-+|.=|.++... ++++-+.+.+|---++--.++. .++|..|
T Consensus 246 ~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~~L 321 (2102)
T PLN03200 246 VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALILYL 321 (2102)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHHHH
Confidence 6899999999976664 233344322333211 1123233344433333222222 3344444
Q ss_pred hhcccchhccCCcCCCC---hhHHHHHHHHHHHHH----------------HHHhcccccCCh-----hHHHHHHhhhhh
Q 000911 592 LYNKICHWLTPFTLSTD---LCTRHGATLAAGEVV----------------LALCKYDYALPA-----DKQKIVAGIVPG 647 (1229)
Q Consensus 592 l~~Kl~HWll~~~~s~d---l~~RHGalLalaei~----------------~al~~~~~~~~~-----~~~~~i~~i~~~ 647 (1229)
.. ++.. ..| +...+|++-.+..+. ..|-++-...++ .....+..++++
T Consensus 322 ~~------ll~s--~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN 393 (2102)
T PLN03200 322 GE------LSES--PRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGN 393 (2102)
T ss_pred HH------hhcc--cchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCC
Confidence 32 0000 001 112233332221111 111111010001 112222222222
Q ss_pred hhhhhcccC------------CchhhHHHHHHHHHHHHhhcCCCCchhHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 000911 648 IEKARLYRG------------KGGEIMRSAVSRFIECISLSFVSLPEKTK-RSLLDTLNENLRHPNSQIQNAAVKALKPF 714 (1229)
Q Consensus 648 ~~~~~l~rg------------~ggel~r~A~c~lI~~ls~s~~pl~~~~~-~~~~~~l~~~L~~~~~~i~~aA~~Al~~l 714 (1229)
..-.+++.. .++.-.+..+|.-|..++...-.....+. ..-...|-+.|++.++++|..|+.++..+
T Consensus 394 ~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nL 473 (2102)
T PLN03200 394 AYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAIL 473 (2102)
T ss_pred hHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 211111111 12344555555555555532110000000 11122344556889999999999888776
Q ss_pred HHHhhccCCcchh-----hhhHHHHHhhcCCCchhhhhHHHHHhhcCChH------hh--hhhHHHHHHHHhhhcccCCC
Q 000911 715 VQTYMVAADSGVV-----GGISLKYMEQLTDPNPAIRRGSALALGVLPYE------LL--ANSWRDVLLKLCSCCLIEEN 781 (1229)
Q Consensus 715 ~~~y~~~~~~~~~-----~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~------~l--~~~~~~il~~L~~~~~~~~~ 781 (1229)
... ..+.. ...+...++-|++++...+.-.+-+||.+-.. .+ .+-+..+++.|
T Consensus 474 a~~-----ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL--------- 539 (2102)
T PLN03200 474 TDE-----VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL--------- 539 (2102)
T ss_pred HcC-----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH---------
Confidence 541 11111 46677888888888888888888888876431 01 12233333322
Q ss_pred CCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHH
Q 000911 782 PEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGL 861 (1229)
Q Consensus 782 ~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l 861 (1229)
...+.+.+.+|+.+|..++.. + + .+.. ..+..- |+.|. .-+...+++++
T Consensus 540 -~sgd~~~q~~Aa~AL~nLi~~-~-----d------------~~~I----~~Lv~L---Llsdd-----~~~~~~aL~vL 588 (2102)
T PLN03200 540 -KNGGPKGQEIAAKTLTKLVRT-A-----D------------AATI----SQLTAL---LLGDL-----PESKVHVLDVL 588 (2102)
T ss_pred -hCCCHHHHHHHHHHHHHHHhc-c-----c------------hhHH----HHHHHH---hcCCC-----hhHHHHHHHHH
Confidence 122578999999999987642 1 0 0111 222222 44443 55666778888
Q ss_pred HHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCCCC
Q 000911 862 EICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP 941 (1229)
Q Consensus 862 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~p 941 (1229)
..+..+....+ ...... .....+..|++.--..=++++..|..++..+.+.. +.
T Consensus 589 gnIlsl~~~~d--------------------~~~~g~---~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~-~d-- 642 (2102)
T PLN03200 589 GHVLSVASLED--------------------LVREGS---AANDALRTLIQLLSSSKEETQEKAASVLADIFSSR-QD-- 642 (2102)
T ss_pred HHHHhhcchhH--------------------HHHHhh---hccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-hH--
Confidence 77642221100 000000 01123444444444455788999999988887643 11
Q ss_pred CcchHHHhhhcCCCcccCcCCCCChhHHHhhhcCchhhHHHHhhcceeecccCccchHHHHHHHHHHHHhccccccchhc
Q 000911 942 IPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDAR 1021 (1229)
Q Consensus 942 ip~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~~y~~~ll~GLv~S~Gglteslvk~S~~aL~~yl~~~~~~~~~~~ 1021 (1229)
... .+.. ...+|.++.+|.- .++...+.+..||....+ .... .+
T Consensus 643 --~~~---avv~----------agaIpPLV~LLss-----------------~~~~v~keAA~AL~nL~~--~~~~--~q 686 (2102)
T PLN03200 643 --LCE---SLAT----------DEIINPCIKLLTN-----------------NTEAVATQSARALAALSR--SIKE--NR 686 (2102)
T ss_pred --HHH---HHHH----------cCCHHHHHHHHhc-----------------CChHHHHHHHHHHHHHHh--CCCH--HH
Confidence 111 1111 1235666665542 445578888888877775 1111 00
Q ss_pred chH--HHHHHHHHHHHHHhhcCCCceeccHHHHHHHHHhc
Q 000911 1022 SSR--EYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSK 1059 (1229)
Q Consensus 1022 ~~~--l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~Ll~~ 1059 (1229)
... -.....-|+++++. .+.++.-..+..|..++..
T Consensus 687 ~~~~v~~GaV~pL~~LL~~--~d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 687 KVSYAAEDAIKPLIKLAKS--SSIEVAEQAVCALANLLSD 724 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhC--CChHHHHHHHHHHHHHHcC
Confidence 000 11123335555544 4556667777777766665
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.68 Score=58.27 Aligned_cols=329 Identities=18% Similarity=0.229 Sum_probs=172.2
Q ss_pred hhcCCCchhhhhHHHHHhhcCC-hHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhcccccccccc
Q 000911 736 EQLTDPNPAIRRGSALALGVLP-YELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIH 814 (1229)
Q Consensus 736 ~~l~~~~~~~r~G~alaLG~lp-~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~ 814 (1229)
..|.++.+..+...+.++|++- ..+.++.|..++..|.+....++. .--+..++.+|+-+|+.+. +
T Consensus 97 ~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~-----~~~k~~slealGyice~i~------p-- 163 (859)
T KOG1241|consen 97 RTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQA-----SMVKESSLEALGYICEDID------P-- 163 (859)
T ss_pred HHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccc-----hHHHHHHHHHHHHHHccCC------H--
Confidence 4466666666666666776654 344567888999888887643332 2578889999999998652 1
Q ss_pred CCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCcccc
Q 000911 815 SGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAE 894 (1229)
Q Consensus 815 ~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (1229)
.......+.++-+++.|+.-=.+++ -||.||.++|...........+ .+
T Consensus 164 ------evl~~~sN~iLtaIv~gmrk~e~s~------~vRLaa~~aL~nsLef~~~nF~------------~E------- 212 (859)
T KOG1241|consen 164 ------EVLEQQSNDILTAIVQGMRKEETSA------AVRLAALNALYNSLEFTKANFN------------NE------- 212 (859)
T ss_pred ------HHHHHHHhHHHHHHHhhccccCCch------hHHHHHHHHHHHHHHHHHHhhc------------cH-------
Confidence 3455677889999999997766664 5999999999887533220000 00
Q ss_pred ccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCCCCCcchHH-Hhhhc----CCCcc-------cCcCC
Q 000911 895 KTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREK-LEEIV----PNEAD-------LNWGV 962 (1229)
Q Consensus 895 ~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~pip~~~~-L~~i~----~~~~~-------~~w~~ 962 (1229)
-+.+++-+++|-.-+ +-| -++|..|..||.++.+-....+ -||.++ |+.+. .++.+ .=|+
T Consensus 213 ---~ern~iMqvvcEatq-~~d--~~i~~aa~~ClvkIm~LyY~~m-~~yM~~alfaitl~amks~~deValQaiEFWs- 284 (859)
T KOG1241|consen 213 ---MERNYIMQVVCEATQ-SPD--EEIQVAAFQCLVKIMSLYYEFM-EPYMEQALFAITLAAMKSDNDEVALQAIEFWS- 284 (859)
T ss_pred ---hhhceeeeeeeeccc-CCc--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-
Confidence 001111222222111 111 2566677777777654431000 122222 22221 11110 0121
Q ss_pred CCChhHHHh-hhcCc-hhhHHHHhhcceeecccCccchHHHHHHHH-------HHHHhccccccchh--cchHHHHHHHH
Q 000911 963 PAFSYPRFV-HLLRF-SCYSRVLLSGLVISIGGLQESLRKASISAL-------LEYLQAGETEDLDA--RSSREYMLYND 1031 (1229)
Q Consensus 963 ~~~~fp~~~-~LL~~-~~y~~~ll~GLv~S~Gglteslvk~S~~aL-------~~yl~~~~~~~~~~--~~~~l~~~~~~ 1031 (1229)
.++ .=.++ -+|...+=.|+.= +--..+++|+ ++-|. .++++. +.=....-.+.
T Consensus 285 ------ticeEEiD~~~e~~e~~d~~~~p-------~~~~fa~~a~~~v~P~Ll~~L~---kqde~~d~DdWnp~kAAg~ 348 (859)
T KOG1241|consen 285 ------TICEEEIDLAIEYGEAVDQGLPP-------SSKYFARQALQDVVPVLLELLT---KQDEDDDDDDWNPAKAAGV 348 (859)
T ss_pred ------HHHHHHHHHHHHHHHHhhcCCCc-------hhhHHHHHHHhHhhHHHHHHHH---hCCCCcccccCcHHHHHHH
Confidence 000 00010 1234444444441 1122222222 22222 111111 11124444555
Q ss_pred HHHHHHhhcCCCceeccHHHHHHHHHhccccccccCCchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhhcCCc---
Q 000911 1032 ILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSD--- 1108 (1229)
Q Consensus 1032 ll~il~~~~~~dRv~vP~L~tl~~Ll~~g~f~~~~~~~~~~~~~l~~l~~~e~~~sk~v~kL~~~i~v~~~l~~~~~--- 1108 (1229)
+|.++.+..+++ ++-|.+-++ ++..++.|-+...+++=.||.++.-++
T Consensus 349 CL~l~A~~~~D~-Iv~~Vl~Fi----------------------------ee~i~~pdwr~reaavmAFGSIl~gp~~~~ 399 (859)
T KOG1241|consen 349 CLMLFAQCVGDD-IVPHVLPFI----------------------------EENIQNPDWRNREAAVMAFGSILEGPEPDK 399 (859)
T ss_pred HHHHHHHHhccc-chhhhHHHH----------------------------HHhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence 556665544433 222333222 234556677778888888888877554
Q ss_pred --hhHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHhcCCC-cchhhHHHHHhhhh
Q 000911 1109 --PISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNI-LEEDKTEKALEIIG 1161 (1229)
Q Consensus 1109 --~~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll~~~d~-~~~e~~d~~~~~L~ 1161 (1229)
++-..|+.-+..+++-|--.||.++|=.||...-...+. ++.+.+-.....|.
T Consensus 400 Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~ 455 (859)
T KOG1241|consen 400 LTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALL 455 (859)
T ss_pred hhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH
Confidence 456678888999999999999999988888765443332 23333333444443
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.27 E-value=0.75 Score=56.68 Aligned_cols=87 Identities=24% Similarity=0.378 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCC
Q 000911 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1229)
Q Consensus 379 ~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p 458 (1229)
|+.+--+++.+...|.|++..+|..|-+.+++|. .+++++.++..|..+++.. ++..=..+++++..+.+. -|
T Consensus 74 ~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~---~p 146 (526)
T PF01602_consen 74 PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDP-SPYVRKKAALALLKIYRK---DP 146 (526)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHH---CH
T ss_pred hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCC-chHHHHHHHHHHHHHhcc---CH
Confidence 5667779999999999999999999999999998 7889988888888877532 112223456666666554 24
Q ss_pred CCccc-hHHHHHHhh
Q 000911 459 SSLPK-VVPVIVKAL 472 (1229)
Q Consensus 459 ~~L~~-vv~~v~~aL 472 (1229)
+.++. ++|.+.+.|
T Consensus 147 ~~~~~~~~~~l~~lL 161 (526)
T PF01602_consen 147 DLVEDELIPKLKQLL 161 (526)
T ss_dssp CCHHGGHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhc
Confidence 44443 345554444
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=1.8 Score=53.98 Aligned_cols=395 Identities=16% Similarity=0.181 Sum_probs=194.3
Q ss_pred CcCCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHH-HHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCc
Q 000911 603 FTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKI-VAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP 681 (1229)
Q Consensus 603 ~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~-i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~ 681 (1229)
...+.|.++-.|++=|+..|..--.+. .+.+...+ +.-++|++. ++|+...+.+-..|+-. |.+ -+++.
T Consensus 136 ~L~s~d~n~~EgA~~AL~KIcEDsa~~---lds~~~~rpl~~mipkfl--~f~~h~spkiRs~A~~c-vNq----~i~~~ 205 (885)
T KOG2023|consen 136 LLDSPDYNTCEGAFGALQKICEDSAQF---LDSDVLTRPLNIMIPKFL--QFFKHPSPKIRSHAVGC-VNQ----FIIIQ 205 (885)
T ss_pred HhcCCcccccchhHHHHHHHHhhhHHH---HhhhcccCchHHhHHHHH--HHHhCCChhHHHHHHhh-hhh----eeecC
Confidence 445788899999999888886432111 11111111 333456654 46776666555444432 211 12222
Q ss_pred hh----HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhh---hhHHHHHhh
Q 000911 682 EK----TKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAI---RRGSALALG 754 (1229)
Q Consensus 682 ~~----~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~---r~G~alaLG 754 (1229)
.+ -++.+++.+-.--...+++||...+.|+.-|......+- ..-...+++-++...++.++.. .+-+-+|+.
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl-~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL-VPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc-ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 22 235555555444478899999999999987766432111 0112678887777776544432 455655554
Q ss_pred c--CChHhhhhhHHHHHHHHhhhcccCCC--------CCCccHHHHHHHHHHHHHHH--hhhcccccccc-ccC----Cc
Q 000911 755 V--LPYELLANSWRDVLLKLCSCCLIEEN--------PEDRDTEARVNAVRGLVSVC--ETLTQSQENSL-IHS----GE 817 (1229)
Q Consensus 755 ~--lp~~~l~~~~~~il~~L~~~~~~~~~--------~~~~d~E~R~~av~sL~~i~--~t~~~~~~~~~-~~~----~~ 817 (1229)
- +|+.++.+++.+++-.|...-.+++. .++.+.+-|-.=++ .++- ++.|..+..+. ... .|
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIk--PRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIK--PRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhcc--chhhhchhccCcccccccccccccccc
Confidence 4 67888888888888777655333321 12222222322222 1111 12222211000 000 00
Q ss_pred h----hh--hHhh---------hhHHHHHHHHHHhccccCCCCCCcchHH-HHHHHHhHHHHHHHHhhc-----------
Q 000911 818 D----EI--SLFH---------LIKNEVMTSLFKALDDYSVDNRGDVGSW-VREAAVDGLEICTYILCK----------- 870 (1229)
Q Consensus 818 ~----~~--~~~~---------~~~~~v~~~Ll~~L~DYT~D~RGDVGSw-VReaam~~l~~~~~ll~~----------- 870 (1229)
| +| .-|. -.-++++.+++=-|.+--.. -.| ||||++=|+..+..--.+
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~-----~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip 437 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS-----EEWKVREAGVLALGAIAEGCMQGFVPHLPELIP 437 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc-----chhhhhhhhHHHHHHHHHHHhhhcccchHHHHH
Confidence 0 01 1111 11233344443333222221 224 799988777764321000
Q ss_pred -----c-CCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCCCC-Cc
Q 000911 871 -----R-DFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVP-IP 943 (1229)
Q Consensus 871 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~p-ip 943 (1229)
. |....-+..+-|+-+--+. +. .+.-...+...++.+++|-...+=-||-+.|+.+|..+-.... -. +|
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~-wv-~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~--~eLVp 513 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSK-WV-VQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG--EELVP 513 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhh-hH-hcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc--chhHH
Confidence 0 0000000011121110000 00 0000235678899999999999999999999999998865531 12 77
Q ss_pred chHHHhhhcCCCcccCcCCCCChhHHHhhhcCchhhHHHHhhcceeecccCccchHHHHHHHHHHHHhccccccchhcch
Q 000911 944 HREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSS 1023 (1229)
Q Consensus 944 ~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~~y~~~ll~GLv~S~Gglteslvk~S~~aL~~yl~~~~~~~~~~~~~ 1023 (1229)
|.+.+..-+- . .+..|.+-=+.=|-=-+|.+.+|+..+ | + .+.
T Consensus 514 ~l~~IL~~l~------------------~--af~kYQ~KNLlILYDAIgtlAdsvg~~----L----n---------~~~ 556 (885)
T KOG2023|consen 514 YLEYILDQLV------------------F--AFGKYQKKNLLILYDAIGTLADSVGHA----L----N---------KPA 556 (885)
T ss_pred HHHHHHHHHH------------------H--HHHHHhhcceehHHHHHHHHHHHHHHh----c----C---------cHH
Confidence 7665443210 0 234555543333333466666665332 1 1 122
Q ss_pred HHHHHHHHHHHHHHhhcCCCceeccHHHHHHHH
Q 000911 1024 REYMLYNDILWVLQHYRRCDRVIVPTLKTIESL 1056 (1229)
Q Consensus 1024 ~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~L 1056 (1229)
-+..+.--|++-++.-..+|.=..|+|+-+...
T Consensus 557 YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsi 589 (885)
T KOG2023|consen 557 YIQILMPPLIEKWELLSDSDKDLFPLLECLSSI 589 (885)
T ss_pred HHHHhccHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 233344445555555556667777777655443
No 17
>PRK09687 putative lyase; Provisional
Probab=95.89 E-value=0.47 Score=54.53 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=112.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchhHH
Q 000911 606 STDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK 685 (1229)
Q Consensus 606 s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~ 685 (1229)
+.|..+|.-++.+++++= +++....+..+ .+. ....+|.+.+.-+..+....-+ .
T Consensus 34 d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~l---------l~~-~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRG----------GQDVFRLAIEL---------CSS-KNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred CCCHHHHHHHHHHHHhcC----------cchHHHHHHHH---------HhC-CCHHHHHHHHHHHHhcCCCccc-----h
Confidence 568888988887776541 22332322221 111 1335677766666544321100 1
Q ss_pred HHHHHHHH-hhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhh
Q 000911 686 RSLLDTLN-ENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANS 764 (1229)
Q Consensus 686 ~~~~~~l~-~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~ 764 (1229)
..-...|. ..+.+++..|+.+|+.|+..++..- .....+.+......+.+.+..+|++.+.|||.+...
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~----- 158 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKN-----PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE----- 158 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-----cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-----
Confidence 12222333 2368899999999999998764321 111134566666666777889999999999988632
Q ss_pred HHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCC
Q 000911 765 WRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVD 844 (1229)
Q Consensus 765 ~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D 844 (1229)
+.+..|+... .+.+.+.|..|+.+|+.+. .. ...+...|...|+|.
T Consensus 159 --~ai~~L~~~L------~d~~~~VR~~A~~aLg~~~----~~-------------------~~~~~~~L~~~L~D~--- 204 (280)
T PRK09687 159 --AAIPLLINLL------KDPNGDVRNWAAFALNSNK----YD-------------------NPDIREAFVAMLQDK--- 204 (280)
T ss_pred --HHHHHHHHHh------cCCCHHHHHHHHHHHhcCC----CC-------------------CHHHHHHHHHHhcCC---
Confidence 3455566553 2345689999999999851 10 124566777777554
Q ss_pred CCCcchHHHHHHHHhHHHH
Q 000911 845 NRGDVGSWVREAAVDGLEI 863 (1229)
Q Consensus 845 ~RGDVGSwVReaam~~l~~ 863 (1229)
-..||.+|+.+|..
T Consensus 205 -----~~~VR~~A~~aLg~ 218 (280)
T PRK09687 205 -----NEEIRIEAIIGLAL 218 (280)
T ss_pred -----ChHHHHHHHHHHHc
Confidence 56789999999964
No 18
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.85 E-value=2.3 Score=51.61 Aligned_cols=326 Identities=19% Similarity=0.228 Sum_probs=187.3
Q ss_pred hHHHHHHHHHhhhhcC-CCchHhHHh--hHHHHHHHHHhhcccCCCChhHHhhhhHHHHHhheeeeeeecccceeecCCC
Q 000911 49 SVHKIRSIMDKYQEQG-QLVEPYLEN--IVSPLMSIIRSKTIELGADSDEILKIIKPICIIIYTLVTVCGYKAVIKFFPH 125 (1229)
Q Consensus 49 ~~~~~~~ild~yQEqP-~LLDp~Le~--~i~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~lY~l~KVRG~K~i~~~fPh 125 (1229)
....+..++++.++.. +.-+.+.-. +++.+++........... ........+++++ +.|++++|.
T Consensus 63 il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~---------~~iv~~l~~ 130 (415)
T PF12460_consen 63 ILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLI---------NLIVRSLSP 130 (415)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHH---------HHHHHhCCH
Confidence 4778889999999998 443333333 777777765432221111 1122233344443 345666665
Q ss_pred Ccc--CHHHHHHHHHhcccCccccccccCCc-chhHHHHHHHHHHHHHhhcCCCCCCCCCcccccccCCCCCChhHHHHH
Q 000911 126 QVS--DLELAVSLLEKCHDTASVTSLRQEST-GEMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRI 202 (1229)
Q Consensus 126 ev~--~Le~vl~~L~~~~~~~s~~~~~~~~~-~~We~rYvlLLWLS~Lvl~PFdLs~id~~~~~~~~~~~~~~~~l~~rI 202 (1229)
+=. .++.+.+++-..... ........ ..|..+..+.+..++++-.|-+..--+ ...+++++
T Consensus 131 ~~q~~~~~~~~~lf~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~-------------~~~ll~~l 194 (415)
T PF12460_consen 131 EKQQEILDELYSLFLSPKSF---SPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPD-------------LEELLQSL 194 (415)
T ss_pred HHHHHHHHHHHHHHcccccc---CCCCccccccccccccHHHHHHHHHHcCCcccCccC-------------HHHHHHHH
Confidence 322 244555555411110 00011111 224566777778888887777665421 23477777
Q ss_pred HHHHHHhhhcCCchhhHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHhcChhhhh
Q 000911 203 LGFCKDYLSNAGPMRTIAGLLLAKLLTR-PDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLL 281 (1229)
Q Consensus 203 l~l~~~yL~~~~k~r~aAa~LLsrl~tR-~D~~~~l~~fl~w~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~g~r~~l~ 281 (1229)
+.++..- .....|.+++.+++=++-+ ++. +.+.+|+++....+........ .. +.+..+.-+.|
T Consensus 195 ~~~~~~~--~~~~~~~~~~~~la~LvNK~~~~-~~l~~~l~~~~~~~~~~~~~~~---~~-~~~~~~~Wi~K-------- 259 (415)
T PF12460_consen 195 LNLALSS--EDEFSRLAALQLLASLVNKWPDD-DDLDEFLDSLLQSISSSEDSEL---RP-QALEILIWITK-------- 259 (415)
T ss_pred HHHHHcC--CChHHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHhhhcccCCcch---hH-HHHHHHHHHHH--------
Confidence 7777653 2377888999999988877 222 2466777776665511111100 01 22222222222
Q ss_pred hhhHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHhhcccCCCcccccccccccccccccccccccccccccCcccccc
Q 000911 282 DVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDS 361 (1229)
Q Consensus 282 ~~~~~i~~~~~~l~~s~~~~~~~l~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rsL~~nl~~~~~~~~~~~~~~~~~~~ 361 (1229)
|++ + | +
T Consensus 260 ------------------------------------aLv-~----------R-------~-------------------- 265 (415)
T PF12460_consen 260 ------------------------------------ALV-M----------R-------G-------------------- 265 (415)
T ss_pred ------------------------------------HHH-H----------c-------C--------------------
Confidence 000 0 0 0
Q ss_pred ccccccCCCCCCCCCCchHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChh----------------hHHHHHH
Q 000911 362 LKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS----------------LSEEVFS 425 (1229)
Q Consensus 362 ~~~~~~~~~~~~ed~dv~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~----------------~a~qVv~ 425 (1229)
.....++++.|++-|.| ..+.+.+|||++-|..-.|.- +-.+++-
T Consensus 266 -----------------~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 266 -----------------HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred -----------------CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 01234556666666666 557899999999888774321 3345666
Q ss_pred HHHhhcCCCCCCCchhhHHHHHHHHHhcCCC---CCCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhccc
Q 000911 426 SVLELFSPGEGDGSWHGGCLALAELARRGLL---LPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAY 502 (1229)
Q Consensus 426 ~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll---~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay 502 (1229)
.+++.|....++ .=+-.+.||+++.+ ..+ +-..+++++|++.++|..+.. .||-|+-=++=.+.+.-
T Consensus 327 ~L~~~~~~~~~~-~k~~yL~ALs~ll~-~vP~~vl~~~l~~LlPLLlqsL~~~~~--------~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 327 KLLEGFKEADDE-IKSNYLTALSHLLK-NVPKSVLLPELPTLLPLLLQSLSLPDA--------DVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHhhcChh-hHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHcC
Confidence 666666544333 33446889999998 331 112469999999999944443 38888888888888886
Q ss_pred CccchHHHHHHHHHHHHHH
Q 000911 503 CHTDMRNILEQIAPHLLTV 521 (1229)
Q Consensus 503 ~~~~l~~~~~~la~~Lv~~ 521 (1229)
|+.+.+|++.|.+.|+..
T Consensus 397 -~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 397 -PELISEHLSSLIPRLLKL 414 (415)
T ss_pred -HHHHHHHHHHHHHHHHhc
Confidence 678889999999998854
No 19
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=12 Score=47.26 Aligned_cols=536 Identities=18% Similarity=0.215 Sum_probs=259.2
Q ss_pred hHHHHHHHHHHHhhhcCCchhhHHHHHHHHHhc-CCChHHH-HHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHh
Q 000911 197 PLVMRILGFCKDYLSNAGPMRTIAGLLLAKLLT-RPDMPTA-FASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKA 274 (1229)
Q Consensus 197 ~l~~rIl~l~~~yL~~~~k~r~aAa~LLsrl~t-R~D~~~~-l~~fl~w~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~ 274 (1229)
.++.|.+...++. +.|.|.-|-.++-.++. |++.... ++.|++-....- ++.+.. ++- .+=.++..++.
T Consensus 174 ~mipkfl~f~~h~---spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFala-nD~~~e---VRk-~vC~alv~Lle- 244 (885)
T KOG2023|consen 174 IMIPKFLQFFKHP---SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALA-NDEDPE---VRK-NVCRALVFLLE- 244 (885)
T ss_pred HhHHHHHHHHhCC---ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHc-cCCCHH---HHH-HHHHHHHHHHH-
Confidence 3445555554432 57888888888877765 7766666 899998765443 322221 221 33334433333
Q ss_pred cChhhhhhhhHHHHHhhhhh-hccC------------CCCCc----hhHHHHHHHHHHHHhhcccCCCcccccccccccc
Q 000911 275 GGRKVLLDVIPVVWNDASTM-LKSG------------SAARS----PLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSS 337 (1229)
Q Consensus 275 g~r~~l~~~~~~i~~~~~~l-~~s~------------~~~~~----~l~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rs 337 (1229)
-..+.+.|+++.|.+-.... .+.+ ..+++ ..+.-++.|++--+ +.+.+|.-..-.
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvL--------l~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVL--------LSGMVYSDDDII 316 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH--------HccCccccccHH
Confidence 24566888888876522111 1110 01112 23334445554321 234566665555
Q ss_pred cccccccccccccccccCccc------------cccccccccCCCCCCCCCCchHHHHHHHHHHHhccCCCCchhHHHhh
Q 000911 338 LGENMSSRAAFREIDQCDHSV------------VDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAA 405 (1229)
Q Consensus 338 L~~nl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ed~dv~e~vE~iI~~LL~~L~d~dT~VRwsaA 405 (1229)
|..|..... ..++.+. .++...+.+ +++||++| ++=...|-.+|=+.|
T Consensus 317 LL~~~eeD~-----~vpDreeDIkPRfhksk~~~~~~~~~~e--DdddDe~D-------------DdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 317 LLKNNEEDE-----SVPDREEDIKPRFHKSKEHGNGEDADDE--DDDDDEDD-------------DDDAFSDWNLRKCSA 376 (885)
T ss_pred HhcCccccc-----cCCchhhhccchhhhchhccCccccccc--cccccccc-------------cccccccccHhhccH
Confidence 543211100 0111000 001111111 11111111 111345678899999
Q ss_pred hhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchh---hHHHHHH---HHHhcCCCCCCCccchHHHHHHhheEeeccc
Q 000911 406 KGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWH---GGCLALA---ELARRGLLLPSSLPKVVPVIVKALHYDIRRG 479 (1229)
Q Consensus 406 KglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WH---G~cLaLA---EL~rrgll~p~~L~~vv~~v~~aL~fd~rrg 479 (1229)
+++.-+++-.+. |++..++-.+...-....|- .|.|||+ |=|..|. -..||+++|.++.-|. |.+-.
T Consensus 377 AaLDVLanvf~~----elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~--~p~LpeLip~l~~~L~-DKkpl 449 (885)
T KOG2023|consen 377 AALDVLANVFGD----ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGF--VPHLPELIPFLLSLLD-DKKPL 449 (885)
T ss_pred HHHHHHHHhhHH----HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhc--ccchHHHHHHHHHHhc-cCccc
Confidence 999988877654 45666655544433446673 4666655 5555664 4578999999977663 44333
Q ss_pred cccCCccccchhhHHHHHhhcccCc---cchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhhccCC--CCCCCccc
Q 000911 480 SHSVGSHVRDAAAYVCWAFGRAYCH---TDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQG--NYPHGIDI 554 (1229)
Q Consensus 480 ~~SvGs~VRDAACyv~WAlaRay~~---~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~VGR~G--~~phGI~I 554 (1229)
||-= .||.+.|.-+- +.-..|+..+...|+- .+.|..--+--||..||==+.---| .+||==.|
T Consensus 450 -------VRsI---TCWTLsRys~wv~~~~~~~~f~pvL~~ll~-~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~I 518 (885)
T KOG2023|consen 450 -------VRSI---TCWTLSRYSKWVVQDSRDEYFKPVLEGLLR-RLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYI 518 (885)
T ss_pred -------eeee---eeeeHhhhhhhHhcCChHhhhHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 3322 37888885321 1111233333333332 3458888888999888764433333 36665556
Q ss_pred eeeece----e---ecccchhhHHHHHHHHhc-c--ccChHHHHHHHhhcccchh-ccCCcCCCChhHHHHHHHHHHHHH
Q 000911 555 VNTADY----F---SLSSRVYSYLHVAVFIAQ-Y--EGYLYPFVDELLYNKICHW-LTPFTLSTDLCTRHGATLAAGEVV 623 (1229)
Q Consensus 555 v~~~Dy----f---aV~~r~~ayl~va~~vA~-~--~~Y~~~li~hLl~~Kl~HW-ll~~~~s~dl~~RHGalLalaei~ 623 (1229)
++.-+| | .+-..-.|.-..|..|+. + +.|.+-|+--|++ .| +++ -...|+..--- +++.|.
T Consensus 519 L~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~----KW~~ls-d~DKdLfPLLE---ClSsia 590 (885)
T KOG2023|consen 519 LDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIE----KWELLS-DSDKDLFPLLE---CLSSIA 590 (885)
T ss_pred HHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHH----HHHhcC-cccchHHHHHH---HHHHHH
Confidence 665552 1 112222233444555542 2 5788877777776 68 111 11223322222 222222
Q ss_pred HHHhcccccCChhHHHHHHhhhhhhh----h----------------------hhcccCCch------------h-----
Q 000911 624 LALCKYDYALPADKQKIVAGIVPGIE----K----------------------ARLYRGKGG------------E----- 660 (1229)
Q Consensus 624 ~al~~~~~~~~~~~~~~i~~i~~~~~----~----------------------~~l~rg~gg------------e----- 660 (1229)
.||..--.+.......+-..|+++.. + .++-.|.|+ +
T Consensus 591 ~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C 670 (885)
T KOG2023|consen 591 SALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQC 670 (885)
T ss_pred HHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHH
Confidence 33321000111111111111111000 0 000011111 0
Q ss_pred ------hHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHH
Q 000911 661 ------IMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKY 734 (1229)
Q Consensus 661 ------l~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~ 734 (1229)
-+|+.+=.|+.-+..+.++.-.-..+.++.++-.++....-.+-+.|.-|+..++...-.. ...-...++...
T Consensus 671 ~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~-~~~~v~~vl~~L 749 (885)
T KOG2023|consen 671 LQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK-MKQYVSPVLEDL 749 (885)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh-hhhHHHHHHHHH
Confidence 1445544455444433221111123566667777777777778888889998888764322 111224555555
Q ss_pred HhhcCCCch--hhhhHHHHH---hhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHH
Q 000911 735 MEQLTDPNP--AIRRGSALA---LGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVC 801 (1229)
Q Consensus 735 ~~~l~~~~~--~~r~G~ala---LG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~ 801 (1229)
+..++.++. +.-...|.. ||..-+....++.+....-.|...+ ...|-|..-+|-+++-.++
T Consensus 750 ~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~-----~i~DneEK~sAFrG~c~mi 816 (885)
T KOG2023|consen 750 ITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLR-----NIDDNEEKESAFRGLCNMI 816 (885)
T ss_pred HHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhc-----ccccchhHHHHHHHHHHhe
Confidence 555543221 111222222 4555666667776666666665432 4456677778888776644
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.18 E-value=11 Score=46.35 Aligned_cols=456 Identities=15% Similarity=0.141 Sum_probs=240.5
Q ss_pred ccCCcCCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCC
Q 000911 600 LTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVS 679 (1229)
Q Consensus 600 ll~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~p 679 (1229)
.+..+.+.|...|+-+.|++..+... +++ .+.-++..+.+. + .+ ..+.+|..+-+.+.+++.
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~--------~~~---~~~l~~n~l~kd-l-~~-~n~~~~~lAL~~l~~i~~---- 108 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHE--------DPE---LLILIINSLQKD-L-NS-PNPYIRGLALRTLSNIRT---- 108 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTT--------SHH---HHHHHHHHHHHH-H-CS-SSHHHHHHHHHHHHHH-S----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhc--------chh---HHHHHHHHHHHh-h-cC-CCHHHHHHHHhhhhhhcc----
Confidence 45566789999999999988877421 233 122233444332 2 22 356788888888877762
Q ss_pred CchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcC--C
Q 000911 680 LPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVL--P 757 (1229)
Q Consensus 680 l~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~l--p 757 (1229)
.+........+..++.|+++.||.+|+-|+..++..+ |......+++...+.+.+.++........++..+ +
T Consensus 109 --~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~----p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 182 (526)
T PF01602_consen 109 --PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD----PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCN 182 (526)
T ss_dssp --HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC----HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCT
T ss_pred --cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccC
Confidence 3556777788888899999999999999998888762 2221112566666677888888888888888777 2
Q ss_pred hHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhH--HHHHHHHH
Q 000911 758 YELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIK--NEVMTSLF 835 (1229)
Q Consensus 758 ~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~Ll 835 (1229)
...........+..|+... ...+.-.+..+++.|...+..- .... ..+++.+.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l------~~~~~~~q~~il~~l~~~~~~~-------------------~~~~~~~~~i~~l~ 237 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLL------SDPDPWLQIKILRLLRRYAPME-------------------PEDADKNRIIEPLL 237 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHH------TCCSHHHHHHHHHHHTTSTSSS-------------------HHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHhhhcc------cccchHHHHHHHHHHHhcccCC-------------------hhhhhHHHHHHHHH
Confidence 2221122344444454432 1223445777777776543210 0111 45666666
Q ss_pred HhccccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhh
Q 000911 836 KALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAV 915 (1229)
Q Consensus 836 ~~L~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~ 915 (1229)
..+. ..+.-|+.+|++.+..+ . . .+...+.++..+.+...
T Consensus 238 ~~l~--------s~~~~V~~e~~~~i~~l----~-----------------------~-----~~~~~~~~~~~L~~lL~ 277 (526)
T PF01602_consen 238 NLLQ--------SSSPSVVYEAIRLIIKL----S-----------------------P-----SPELLQKAINPLIKLLS 277 (526)
T ss_dssp HHHH--------HHHHHHHHHHHHHHHHH----S-----------------------S-----SHHHHHHHHHHHHHHHT
T ss_pred HHhh--------ccccHHHHHHHHHHHHh----h-----------------------c-----chHHHHhhHHHHHHHhh
Confidence 6666 77778888888887643 1 0 12256777888888888
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCCCCCcchHHHhhhcCCCcccCcCCCCChhHHHhhhcCchhhHHH---Hhhcceeecc
Q 000911 916 EKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRV---LLSGLVISIG 992 (1229)
Q Consensus 916 EKiDrvR~~A~~~l~~ll~~~~~~~pip~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~~y~~~---ll~GLv~S~G 992 (1229)
.+=..+|..|..++..+.....+. +.+..........+ +-+..+.. ++..++
T Consensus 278 s~~~nvr~~~L~~L~~l~~~~~~~--v~~~~~~~~~l~~~-------------------~d~~Ir~~~l~lL~~l~---- 332 (526)
T PF01602_consen 278 SSDPNVRYIALDSLSQLAQSNPPA--VFNQSLILFFLLYD-------------------DDPSIRKKALDLLYKLA---- 332 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCCHCHHH--HGTHHHHHHHHHCS-------------------SSHHHHHHHHHHHHHH-----
T ss_pred cccchhehhHHHHHHHhhcccchh--hhhhhhhhheecCC-------------------CChhHHHHHHHHHhhcc----
Confidence 777779999999988886554110 11111100111100 11112222 222222
Q ss_pred cCccchHHHHHHHHHHHHhccccccchhcchHHHHHHHHHHHHHHhhcCCCceeccHHHHHHHHHhc-ccccccc-----
Q 000911 993 GLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSK-RIFLNME----- 1066 (1229)
Q Consensus 993 glteslvk~S~~aL~~yl~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~Ll~~-g~f~~~~----- 1066 (1229)
+++-++.-...|..|+.. .. +++....+...|..+...+.. ..-..++++-.|+.. |-....+
T Consensus 333 --~~~n~~~Il~eL~~~l~~--~~----d~~~~~~~i~~I~~la~~~~~---~~~~~v~~l~~ll~~~~~~~~~~~~~~i 401 (526)
T PF01602_consen 333 --NESNVKEILDELLKYLSE--LS----DPDFRRELIKAIGDLAEKFPP---DAEWYVDTLLKLLEISGDYVSNEIINVI 401 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHH--C------HHHHHHHHHHHHHHHHHHGS---SHHHHHHHHHHHHHCTGGGCHCHHHHHH
T ss_pred --cccchhhHHHHHHHHHHh--cc----chhhhhhHHHHHHHHHhccCc---hHHHHHHHHHHhhhhccccccchHHHHH
Confidence 355566666677777741 11 233444555555555555422 222233444444442 1110000
Q ss_pred ----CCchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHhcCCChhhhHHHHHHHHHH
Q 000911 1067 ----VHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDP--ISTRAFSYLLNFLGHRFPKIRKASAEQVYLV 1140 (1229)
Q Consensus 1067 ----~~~~~~~~~l~~l~~~e~~~sk~v~kL~~~i~v~~~l~~~~~~--~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~ 1140 (1229)
...++.-..++..+.+-+...++..-+..++-++|.....-+. .....+..+.....---+.||...-..+...
T Consensus 402 ~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 402 RDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKL 481 (526)
T ss_dssp HHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 0000111222333333334445544444444454444432212 3445555555544444567888777776665
Q ss_pred HHhcCCCcchhhHHHHHhhhhhcCC-CCchhHhHHHHHHHHHHh
Q 000911 1141 LLQNGNILEEDKTEKALEIIGETCW-EGDMNVVKHQRLELYNLA 1183 (1229)
Q Consensus 1141 Ll~~~d~~~~e~~d~~~~~L~~tdW-~~~~~~~r~~r~~l~~l~ 1183 (1229)
.....+ .+..+++.+.+..-.= ++.-.++|..-.+...++
T Consensus 482 ~~~~~~---~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 482 FKRNPE---NEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHSCS---TTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HhhCCc---hhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 554431 1222234443333221 334556666666655554
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.09 E-value=0.57 Score=62.21 Aligned_cols=244 Identities=21% Similarity=0.177 Sum_probs=146.0
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHhhccCCCCCCCccceeeeceeecccchhhHHHHHHHHhccccChHHHHHHHhhc
Q 000911 515 APHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYN 594 (1229)
Q Consensus 515 a~~Lv~~a~FDrevniRRaAsAAfQE~VGR~G~~phGI~Iv~~~DyfaV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~ 594 (1229)
....++-.+-|.+..+||+|..+|.+. |. ++..+.|+ .++
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~-~~------------------------------------~~~~~~L~-~aL-- 661 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTET-TP------------------------------------PGFGPALV-AAL-- 661 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhh-cc------------------------------------hhHHHHHH-HHH--
Confidence 345666778899999999999888754 10 01111222 222
Q ss_pred ccchhccCCcCCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHh
Q 000911 595 KICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECIS 674 (1229)
Q Consensus 595 Kl~HWll~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls 674 (1229)
.+.|..+|.-++-+++++...+. ... .+. ..+. . .-..+|.++...+..+.
T Consensus 662 ----------~D~d~~VR~~Aa~aL~~l~~~~~------~~~---~L~---~~L~------~-~d~~VR~~A~~aL~~~~ 712 (897)
T PRK13800 662 ----------GDGAAAVRRAAAEGLRELVEVLP------PAP---ALR---DHLG------S-PDPVVRAAALDVLRALR 712 (897)
T ss_pred ----------cCCCHHHHHHHHHHHHHHHhccC------chH---HHH---HHhc------C-CCHHHHHHHHHHHHhhc
Confidence 35688899988888877743221 111 111 1111 1 23468888877776543
Q ss_pred hcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhh
Q 000911 675 LSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALG 754 (1229)
Q Consensus 675 ~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG 754 (1229)
... . . .+-..|.+++..|+.+|+.|+..+ .+. ...+..+.+.+...|...+.+||
T Consensus 713 ~~~------~-~----~l~~~L~D~d~~VR~~Av~aL~~~-------~~~-------~~l~~~l~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 713 AGD------A-A----LFAAALGDPDHRVRIEAVRALVSV-------DDV-------ESVAGAATDENREVRIAVAKGLA 767 (897)
T ss_pred cCC------H-H----HHHHHhcCCCHHHHHHHHHHHhcc-------cCc-------HHHHHHhcCCCHHHHHHHHHHHH
Confidence 211 1 1 233456899999999999998653 111 12344567889999999999999
Q ss_pred cCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHH
Q 000911 755 VLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSL 834 (1229)
Q Consensus 755 ~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L 834 (1229)
.+-..-. ..+..|.... .+.|.+.|..|+.+|+.+.. + ..+...+
T Consensus 768 ~~~~~~~-----~~~~~L~~ll------~D~d~~VR~aA~~aLg~~g~-------~-----------------~~~~~~l 812 (897)
T PRK13800 768 TLGAGGA-----PAGDAVRALT------GDPDPLVRAAALAALAELGC-------P-----------------PDDVAAA 812 (897)
T ss_pred Hhccccc-----hhHHHHHHHh------cCCCHHHHHHHHHHHHhcCC-------c-----------------chhHHHH
Confidence 8743211 1122333322 23469999999999987311 0 1223446
Q ss_pred HHhccccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHh
Q 000911 835 FKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQA 914 (1229)
Q Consensus 835 l~~L~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa 914 (1229)
..+|+|= | -.||.+|+++|..+ . + .+.+..|++..
T Consensus 813 ~~aL~d~------d--~~VR~~Aa~aL~~l----~-----------------------------~----~~a~~~L~~~L 847 (897)
T PRK13800 813 TAALRAS------A--WQVRQGAARALAGA----A-----------------------------A----DVAVPALVEAL 847 (897)
T ss_pred HHHhcCC------C--hHHHHHHHHHHHhc----c-----------------------------c----cchHHHHHHHh
Confidence 6777651 2 24999999998643 1 0 11234455555
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 000911 915 VEKMDKLREAAAKVLRRI 932 (1229)
Q Consensus 915 ~EKiDrvR~~A~~~l~~l 932 (1229)
-++--.||..|...|.++
T Consensus 848 ~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCCHHHHHHHHHHHhcc
Confidence 677778999998888875
No 22
>PTZ00429 beta-adaptin; Provisional
Probab=94.80 E-value=19 Score=46.99 Aligned_cols=323 Identities=14% Similarity=0.138 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCC
Q 000911 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1229)
Q Consensus 379 ~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p 458 (1229)
||..--+|+.|...+.|++-.||=.|-+.++.|-. +++.
T Consensus 100 pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~---~~i~-------------------------------------- 138 (746)
T PTZ00429 100 PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV---SSVL-------------------------------------- 138 (746)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc---HHHH--------------------------------------
Confidence 56677889999999999999999888777766532 2333
Q ss_pred CCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccch--HHHHHHHHHHHHHHHhcCCCchhhhhHHH
Q 000911 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDM--RNILEQIAPHLLTVACYDREVNCRRAAAA 536 (1229)
Q Consensus 459 ~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l--~~~~~~la~~Lv~~a~FDrevniRRaAsA 536 (1229)
+.+++.+.++|. ..-..||=+|++.+.-+.|.+. +.. ..++..|-. .+-|++..+-.+|-+
T Consensus 139 ---e~l~~~lkk~L~--------D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L~~-----LL~D~dp~Vv~nAl~ 201 (746)
T PTZ00429 139 ---EYTLEPLRRAVA--------DPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDLVE-----LLNDNNPVVASNAAA 201 (746)
T ss_pred ---HHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHHHH-----HhcCCCccHHHHHHH
Confidence 334444444442 1225688888887777766543 222 123333322 356999999999999
Q ss_pred HHHHhhccCCCCCCCccceeeeceeecccchhhHHHHHHHHhccccChHHHHHHHhhcccchhccCCcCCCChhHHHHHH
Q 000911 537 AFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGAT 616 (1229)
Q Consensus 537 AfQE~VGR~G~~phGI~Iv~~~DyfaV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGal 616 (1229)
||.|..-.. |.++++. ...+.. |++.| .....| |-
T Consensus 202 aL~eI~~~~---~~~l~l~-----------~~~~~~--------------Ll~~L--~e~~EW--------------~Q- 236 (746)
T PTZ00429 202 IVCEVNDYG---SEKIESS-----------NEWVNR--------------LVYHL--PECNEW--------------GQ- 236 (746)
T ss_pred HHHHHHHhC---chhhHHH-----------HHHHHH--------------HHHHh--hcCChH--------------HH-
Confidence 999995322 2222210 111111 22222 123345 00
Q ss_pred HHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchhHHHH----HHHHH
Q 000911 617 LAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRS----LLDTL 692 (1229)
Q Consensus 617 Lalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~~~----~~~~l 692 (1229)
..++..|.......+++. ..++..+.. ++.. ..+..+- +++++|-.++.. . ..+.... ....+
T Consensus 237 ---i~IL~lL~~y~P~~~~e~----~~il~~l~~-~Lq~-~N~AVVl-~Aik~il~l~~~-~--~~~~~~~~~~rl~~pL 303 (746)
T PTZ00429 237 ---LYILELLAAQRPSDKESA----ETLLTRVLP-RMSH-QNPAVVM-GAIKVVANLASR-C--SQELIERCTVRVNTAL 303 (746)
T ss_pred ---HHHHHHHHhcCCCCcHHH----HHHHHHHHH-HhcC-CCHHHHH-HHHHHHHHhcCc-C--CHHHHHHHHHHHHHHH
Confidence 012222211111111111 122222221 1222 2233333 334444333321 0 1121111 11111
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhh----cCCCchhhhhHHHHHhhcCChHhhhhhHHHH
Q 000911 693 NENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ----LTDPNPAIRRGSALALGVLPYELLANSWRDV 768 (1229)
Q Consensus 693 ~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~----l~~~~~~~r~G~alaLG~lp~~~l~~~~~~i 768 (1229)
..|.+...++|-.+...+..+...+ + .++..+++. ..++.-. + -.+|-.+....-.....+|
T Consensus 304 -v~L~ss~~eiqyvaLr~I~~i~~~~----P-----~lf~~~~~~Ff~~~~Dp~yI-K---~~KLeIL~~Lane~Nv~~I 369 (746)
T PTZ00429 304 -LTLSRRDAETQYIVCKNIHALLVIF----P-----NLLRTNLDSFYVRYSDPPFV-K---LEKLRLLLKLVTPSVAPEI 369 (746)
T ss_pred -HHhhCCCccHHHHHHHHHHHHHHHC----H-----HHHHHHHHhhhcccCCcHHH-H---HHHHHHHHHHcCcccHHHH
Confidence 1235566788888877776665542 1 233333333 3444432 2 2344444433333457788
Q ss_pred HHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCc
Q 000911 769 LLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGD 848 (1229)
Q Consensus 769 l~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGD 848 (1229)
++.|.... .+.|.+-|+.+|++|+.++.++ ....+.+++.|++-+++ +++
T Consensus 370 L~EL~eYa------~d~D~ef~r~aIrAIg~lA~k~-------------------~~~a~~cV~~Ll~ll~~-----~~~ 419 (746)
T PTZ00429 370 LKELAEYA------SGVDMVFVVEVVRAIASLAIKV-------------------DSVAPDCANLLLQIVDR-----RPE 419 (746)
T ss_pred HHHHHHHh------hcCCHHHHHHHHHHHHHHHHhC-------------------hHHHHHHHHHHHHHhcC-----Cch
Confidence 88887654 3457899999999999987643 13456777777777654 455
Q ss_pred chHHHHHHHHhHHHHHH
Q 000911 849 VGSWVREAAVDGLEICT 865 (1229)
Q Consensus 849 VGSwVReaam~~l~~~~ 865 (1229)
+ |- +++.++..++
T Consensus 420 ~---v~-e~i~vik~Il 432 (746)
T PTZ00429 420 L---LP-QVVTAAKDIV 432 (746)
T ss_pred h---HH-HHHHHHHHHH
Confidence 3 33 4677887764
No 23
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=12 Score=50.90 Aligned_cols=341 Identities=19% Similarity=0.250 Sum_probs=199.0
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCC--------------------C-----
Q 000911 381 ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPG--------------------E----- 435 (1229)
Q Consensus 381 ~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~--------------------~----- 435 (1229)
...+|...+.+.|.|+|-.+-=.||||+|-|=+-=+..+-..+|+++++.|... +
T Consensus 858 ~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg 937 (1702)
T KOG0915|consen 858 MLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGG 937 (1702)
T ss_pred ccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCC
Confidence 455677888899999999999999999999988777777788888888766321 0
Q ss_pred -----------------------------CCCchh---h---HHHHHHHHHhcCCCCCCCccchHHHHHHhheEeecccc
Q 000911 436 -----------------------------GDGSWH---G---GCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGS 480 (1229)
Q Consensus 436 -----------------------------~~~~WH---G---~cLaLAEL~rrgll~p~~L~~vv~~v~~aL~fd~rrg~ 480 (1229)
....|. | |.=++|+=++.. +...++++||-+.+ -.||--.
T Consensus 938 ~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~k--l~p~l~kLIPrLyR-Y~yDP~~-- 1012 (1702)
T KOG0915|consen 938 KISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEK--LEPYLKKLIPRLYR-YQYDPDK-- 1012 (1702)
T ss_pred cchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHh--hhhHHHHhhHHHhh-hccCCcH--
Confidence 123452 3 233444444333 35578999998844 2344433
Q ss_pred ccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhhccCCCCCCCccceeeece
Q 000911 481 HSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADY 560 (1229)
Q Consensus 481 ~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~VGR~G~~phGI~Iv~~~Dy 560 (1229)
.|+||=-= +|---=.=.......|+..|+.+|++ .|-+||--+|-|+.-|+=-++-++.+-
T Consensus 1013 -----~Vq~aM~s-IW~~Li~D~k~~vd~y~neIl~eLL~-~lt~kewRVReasclAL~dLl~g~~~~------------ 1073 (1702)
T KOG0915|consen 1013 -----KVQDAMTS-IWNALITDSKKVVDEYLNEILDELLV-NLTSKEWRVREASCLALADLLQGRPFD------------ 1073 (1702)
T ss_pred -----HHHHHHHH-HHHHhccChHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHcCCChH------------
Confidence 46776543 46443332234566799999999985 688999999999999998888663321
Q ss_pred eecccchhhHHHHHHHHhccccChHHHHHHHhhcccchhccCCcCCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHH
Q 000911 561 FSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKI 640 (1229)
Q Consensus 561 faV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~ 640 (1229)
..+...++||..++.-.=+.|= +-=+.-|++.=+++.++-..... ..+.+..+-
T Consensus 1074 --------------~~~e~lpelw~~~fRvmDDIKE----------sVR~aa~~~~~~lsKl~vr~~d~--~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1074 --------------QVKEKLPELWEAAFRVMDDIKE----------SVREAADKAARALSKLCVRICDV--TNGAKGKEA 1127 (1702)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhccc--CCcccHHHH
Confidence 1234556788877654432110 00145566666677666544332 112222333
Q ss_pred HHhhhhhhhhhhcccCC------------------chhhHHHHHHHHHHHHhhcCCCCchh---------------HH--
Q 000911 641 VAGIVPGIEKARLYRGK------------------GGEIMRSAVSRFIECISLSFVSLPEK---------------TK-- 685 (1229)
Q Consensus 641 i~~i~~~~~~~~l~rg~------------------ggel~r~A~c~lI~~ls~s~~pl~~~---------------~~-- 685 (1229)
+..++|.+.+.+.- .+ .|..+..-...||-++-.+.-++... .+
T Consensus 1128 l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt 1206 (1702)
T KOG0915|consen 1128 LDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDT 1206 (1702)
T ss_pred HHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHH
Confidence 44455555443222 11 12223333344444332221122110 00
Q ss_pred --------HHHHHHHHhhcCCCchHHHHHHHHHHHH--------------------HHHHhhccCCcchhhhhHHHHHhh
Q 000911 686 --------RSLLDTLNENLRHPNSQIQNAAVKALKP--------------------FVQTYMVAADSGVVGGISLKYMEQ 737 (1229)
Q Consensus 686 --------~~~~~~l~~~L~~~~~~i~~aA~~Al~~--------------------l~~~y~~~~~~~~~~~ii~~~~~~ 737 (1229)
.-..++|+.|+.+.+..+-+.-.--+.. +...| ..+-....+.+++..+..
T Consensus 1207 ~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-~~emtP~sgKll~al~~g 1285 (1702)
T KOG0915|consen 1207 LRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-GSEMTPYSGKLLRALFPG 1285 (1702)
T ss_pred HHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-ccccCcchhHHHHHHhhc
Confidence 1134678888888888775543222222 22221 111111125666666667
Q ss_pred cCCCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHh
Q 000911 738 LTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLC 773 (1229)
Q Consensus 738 l~~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~ 773 (1229)
+++.|+..++-++.|+|.+-.+--..+.++.++.+.
T Consensus 1286 ~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1286 AKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred cccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 788999999999999999976655555555555544
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=6.3 Score=48.67 Aligned_cols=389 Identities=16% Similarity=0.237 Sum_probs=196.7
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhc-CCCchhhhhHHHHHhhcCChHhh---hhhHHHHHH
Q 000911 695 NLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQL-TDPNPAIRRGSALALGVLPYELL---ANSWRDVLL 770 (1229)
Q Consensus 695 ~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l-~~~~~~~r~G~alaLG~lp~~~l---~~~~~~il~ 770 (1229)
+|.+..=+=+.+|+--+..+++.+....+....+++|+..+... .+++...|+|--.++.+.---+- .++.+.++.
T Consensus 8 ~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~ 87 (675)
T KOG0212|consen 8 GLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVP 87 (675)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhH
Confidence 44555556678888889999998887655445566666666554 35555555565444433311110 123444444
Q ss_pred HHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcch
Q 000911 771 KLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVG 850 (1229)
Q Consensus 771 ~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVG 850 (1229)
-.+.|. .+.|...|--|..++-.|+.-.- +. ....++.+++++.+..-|=...=|| |
T Consensus 88 Pv~~cf------~D~d~~vRyyACEsLYNiaKv~k--~~-------------v~~~Fn~iFdvL~klsaDsd~~V~~--~ 144 (675)
T KOG0212|consen 88 PVLNCF------SDQDSQVRYYACESLYNIAKVAK--GE-------------VLVYFNEIFDVLCKLSADSDQNVRG--G 144 (675)
T ss_pred HHHHhc------cCccceeeeHhHHHHHHHHHHhc--cC-------------cccchHHHHHHHHHHhcCCcccccc--H
Confidence 444443 34567778888888877665211 10 1235677888777666554433333 2
Q ss_pred HHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000911 851 SWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLR 930 (1229)
Q Consensus 851 SwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~ 930 (1229)
+-..- +-++++ .+ ...+-|+ +..++..--|+|--+-.-+-..+
T Consensus 145 aeLLd---RLikdI---Vt-----------------------e~~~tFs-------L~~~ipLL~eriy~~n~~tR~fl- 187 (675)
T KOG0212|consen 145 AELLD---RLIKDI---VT-----------------------ESASTFS-------LPEFIPLLRERIYVINPMTRQFL- 187 (675)
T ss_pred HHHHH---HHHHHh---cc-----------------------ccccccC-------HHHHHHHHHHHHhcCCchHHHHH-
Confidence 21110 011111 11 0011121 12233333333322111111111
Q ss_pred HHhhccCCCCCCcchHHHhhhcCCCcccCcCCCCChhHHHhhhcCchhhHHHHhhcceeecccCccchHHHHHHHHHHHH
Q 000911 931 RILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYL 1010 (1229)
Q Consensus 931 ~ll~~~~~~~pip~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~~y~~~ll~GLv~S~Gglteslvk~S~~aL~~yl 1010 (1229)
+.|..- --.++-+++=.|-..++-||..--|.-++++..-....|-+|+
T Consensus 188 ---------------------------v~Wl~~----Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 188 ---------------------------VSWLYV----LDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ---------------------------HHHHHH----HhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 122100 0001111223577788889998888889988888888888888
Q ss_pred hccccccchhc-----------------chHHHHHHHHHHHHHHhhcCCCceeccHHHH-HHHHHhccccccccCCchhH
Q 000911 1011 QAGETEDLDAR-----------------SSREYMLYNDILWVLQHYRRCDRVIVPTLKT-IESLFSKRIFLNMEVHTPIF 1072 (1229)
Q Consensus 1011 ~~~~~~~~~~~-----------------~~~l~~~~~~ll~il~~~~~~dRv~vP~L~t-l~~Ll~~g~f~~~~~~~~~~ 1072 (1229)
. ++++..+. .+.+... .|.|+.+=-.-..|..+|.+.. +..++. |..+.++.+..+
T Consensus 237 ~--eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~--al~Wi~efV~i~g~~~l~~~s~il~~iLp--c~s~~e~~~i~~ 310 (675)
T KOG0212|consen 237 A--EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLK--ALTWIQEFVKIPGRDLLLYLSGILTAILP--CLSDTEEMSIKE 310 (675)
T ss_pred H--HHhcCccccCcccchhhccccccCCcHHHHHH--HHHHHHHHhcCCCcchhhhhhhhhhhccc--CCCCCccccHHH
Confidence 7 44431111 1112211 2334333222334444444332 222222 222222211123
Q ss_pred HHH-----HHHHHHHHHHccCChHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHh-cC
Q 000911 1073 CAG-----VLDSLAVELKATKDFSKLYAGIAILGYIASVS-DPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQ-NG 1145 (1229)
Q Consensus 1073 ~~~-----l~~l~~~e~~~sk~v~kL~~~i~v~~~l~~~~-~~~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll~-~~ 1145 (1229)
+.. +..++-.+-.++. --..+.|.|+...+..+ .+.|-.++.- ...|.|++|.==-.-.+.+|..|+. .+
T Consensus 311 ~a~~~n~~l~~l~s~~~~~~~--id~~~ii~vl~~~l~~~~~~tri~~L~W-i~~l~~~~p~ql~~h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVSSERLKEE--IDYGSIIEVLTKYLSDDREETRIAVLNW-IILLYHKAPGQLLVHNDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHHHHHHHhhhhhccc--cchHHHHHHHHHHhhcchHHHHHHHHHH-HHHHHhhCcchhhhhccHHHHHHHHhhc
Confidence 332 3344444433332 12234455555444432 1334444432 3488999998777888899998874 33
Q ss_pred CCcchhhHHHHHhhhhhcCCCCchhHhHHHHHHHHHHhC
Q 000911 1146 NILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAG 1184 (1229)
Q Consensus 1146 d~~~~e~~d~~~~~L~~tdW~~~~~~~r~~r~~l~~l~g 1184 (1229)
|. ++++...++++|.+.+=+....-.|+--+-|.++|.
T Consensus 388 d~-sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 388 DR-SDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFK 425 (675)
T ss_pred Cc-hhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHh
Confidence 33 456777899999998888766566777777777764
No 25
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=24 Score=44.18 Aligned_cols=331 Identities=20% Similarity=0.179 Sum_probs=190.2
Q ss_pred ccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhh-hHHHHHHHhhccCCCCCCCccceeeeceeeccc
Q 000911 487 VRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRR-AAAAAFQENVGRQGNYPHGIDIVNTADYFSLSS 565 (1229)
Q Consensus 487 VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRR-aAsAAfQE~VGR~G~~phGI~Iv~~~DyfaV~~ 565 (1229)
=|+-|.|.+|.|.+.|.-+.++ +.-+..=+..+.=|++---|| +++=||+=+-|-.|.
T Consensus 150 ~~~~aa~~~ag~v~g~~i~~~~---~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~------------------ 208 (569)
T KOG1242|consen 150 ERAGAAYGLAGLVNGLGIESLK---EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP------------------ 208 (569)
T ss_pred HHhhhhHHHHHHHcCcHHhhhh---hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC------------------
Confidence 4567889999999998854443 333444445566687777777 555444433333221
Q ss_pred chhhHHHHHHHHhccccChHHHHHHHhhcccchhccCCcCCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhh
Q 000911 566 RVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIV 645 (1229)
Q Consensus 566 r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~ 645 (1229)
-++-|.-+++-+++. +..+.+-.+||-+.-|+-.+...+...+ .-.-+...+
T Consensus 209 -------------~~EPyiv~~lp~il~---------~~~d~~~~Vr~Aa~~a~kai~~~~~~~a------VK~llpsll 260 (569)
T KOG1242|consen 209 -------------PFEPYIVPILPSILT---------NFGDKINKVREAAVEAAKAIMRCLSAYA------VKLLLPSLL 260 (569)
T ss_pred -------------CCCchHHhhHHHHHH---------HhhccchhhhHHHHHHHHHHHHhcCcch------hhHhhhhhH
Confidence 144566777777763 2334567899999999988888774321 111233444
Q ss_pred hhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCc
Q 000911 646 PGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADS 724 (1229)
Q Consensus 646 ~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~-~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~ 724 (1229)
..+++. .+|. ..|+..++.+++-+. |.. ........-.+.+.|.....+|++++.+++..++... ..
T Consensus 261 ~~l~~~-kWrt------K~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi----dN 328 (569)
T KOG1242|consen 261 GSLLEA-KWRT------KMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI----DN 328 (569)
T ss_pred HHHHHH-hhhh------HHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh----cc
Confidence 445444 3453 345555665554322 211 1122344445667778888999999999999888752 22
Q ss_pred chhhhhHHHHHhhcCCCc-hhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhh
Q 000911 725 GVVGGISLKYMEQLTDPN-PAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 803 (1229)
Q Consensus 725 ~~~~~ii~~~~~~l~~~~-~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t 803 (1229)
..+..++...++.+.+++ ...-++-.+.-+.+-.++-.+.+.-++--|.+.. ..+..+++|.++.-+...|.-
T Consensus 329 ~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l------~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 329 PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGL------AERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHH------hhccchhhhhHHHHHHHHHHh
Confidence 234677777777777665 3334433333333333332333433333344443 345577788888877777754
Q ss_pred hccccccccccCCchhhhHhhhhHHHHHHHHHHhccc--cCCCCCCcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCc
Q 000911 804 LTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDD--YSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQ 881 (1229)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~D--YT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~ 881 (1229)
+. | ...+..++.-|+.++.- ||++ --||+.+-++|..+..-+..
T Consensus 403 ve-----D------------p~~lapfl~~Llp~lk~~~~d~~------PEvR~vaarAL~~l~e~~g~----------- 448 (569)
T KOG1242|consen 403 VE-----D------------PKDLAPFLPSLLPGLKENLDDAV------PEVRAVAARALGALLERLGE----------- 448 (569)
T ss_pred hc-----C------------HHHHhhhHHHHhhHHHHHhcCCC------hhHHHHHHHHHHHHHHHHHh-----------
Confidence 31 1 23455566666666533 3333 25899999999766533220
Q ss_pred cccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 000911 882 EVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNK 936 (1229)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~ 936 (1229)
...+..+ | .++.. ...||+++-|..+...+..++...
T Consensus 449 ----------~~f~d~~-p----~l~e~---~~~~k~~~~~~g~aq~l~evl~~~ 485 (569)
T KOG1242|consen 449 ----------VSFDDLI-P----ELSET---LTSEKSLVDRSGAAQDLSEVLAGL 485 (569)
T ss_pred ----------hcccccc-c----HHHHh---hccchhhhhhHHHhhhHHHHHhcc
Confidence 0111111 1 11111 257899999999999888887553
No 26
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.23 E-value=30 Score=43.48 Aligned_cols=212 Identities=20% Similarity=0.177 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 000911 610 CTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLL 689 (1229)
Q Consensus 610 ~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~~~~~ 689 (1229)
..-||..+..++.+.-.+ +.+.+..+..+..+.... ..-..||+++-.+-..++. +++..+.-.....
T Consensus 31 ~~v~~~ml~a~~~~~~~~------~~~~v~~l~~~~~~~l~~-----~~~~~~~~~~~v~~~~~a~-~~~~~d~~~~~~~ 98 (569)
T KOG1242|consen 31 IDVRGNMLEAGEAAINQH------GDQNVLNLKPCFEQRLNS-----LHNDNLRNNVVVLEGTLAF-HLQIVDPRPISII 98 (569)
T ss_pred hhhHHhHHHHHHHHHHhh------hHHHHHHHHHHHHHHhcc-----chhHHHhhhhHHHHHHHHH-hccccCcchhHHH
Confidence 356788887777665443 233334444433332221 1256788888888877764 2333222223444
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhh--hHHH
Q 000911 690 DTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLAN--SWRD 767 (1229)
Q Consensus 690 ~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~--~~~~ 767 (1229)
+.+-+.+..|.+.+|.+.+..+..+....- +...+.+.....+.++...-+.|.|++-++..+-.-.... .-..
T Consensus 99 ~~~~~~~~tps~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~ 174 (569)
T KOG1242|consen 99 EILLEELDTPSKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFG 174 (569)
T ss_pred HHHHHhcCCCcHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhh
Confidence 555556799999999998888877765432 2222444455555556667778889888876664333221 2235
Q ss_pred HHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCC
Q 000911 768 VLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRG 847 (1229)
Q Consensus 768 il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RG 847 (1229)
+++.|..... +..-+.-|..+..+....+..+|....| . +-.++-.++.+ =|
T Consensus 175 ~l~~l~~ai~-----dk~~~~~re~~~~a~~~~~~~Lg~~~EP--------------y-iv~~lp~il~~--------~~ 226 (569)
T KOG1242|consen 175 FLDNLSKAII-----DKKSALNREAALLAFEAAQGNLGPPFEP--------------Y-IVPILPSILTN--------FG 226 (569)
T ss_pred HHHHHHHHhc-----ccchhhcHHHHHHHHHHHHHhcCCCCCc--------------h-HHhhHHHHHHH--------hh
Confidence 7777877643 2223455556777777888887743221 1 12233333332 37
Q ss_pred cchHHHHHHHHhHHHHHH
Q 000911 848 DVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 848 DVGSwVReaam~~l~~~~ 865 (1229)
|=+--||+||+.+...+.
T Consensus 227 d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 227 DKINKVREAAVEAAKAIM 244 (569)
T ss_pred ccchhhhHHHHHHHHHHH
Confidence 788899999999998875
No 27
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.90 E-value=0.079 Score=40.28 Aligned_cols=30 Identities=37% Similarity=0.484 Sum_probs=26.4
Q ss_pred HHHHHHhccCCCCchhHHHhhhhhhhhHhh
Q 000911 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSC 414 (1229)
Q Consensus 385 iI~~LL~~L~d~dT~VRwsaAKglgrI~~r 414 (1229)
++..+++.++|.+..||.+|++++|.|+..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 567899999999999999999999999864
No 28
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=91.71 E-value=23 Score=46.27 Aligned_cols=164 Identities=21% Similarity=0.198 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhhc-CCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCC
Q 000911 662 MRSAVSRFIECISLS-FVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTD 740 (1229)
Q Consensus 662 ~r~A~c~lI~~ls~s-~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~ 740 (1229)
+|.|+-..|-.++.. .+++ +.+.+..++..++....-.|+++|+.-+..++..+- ..-....++.+++.....
T Consensus 495 vr~ail~~ip~la~q~~~~~---~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q 568 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLGVEF---FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQ 568 (759)
T ss_pred HHHHHHHHHHHHHHhhhhHH---hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcC
Confidence 888988888876642 2222 234577777777888888999999999999988653 123447888888887655
Q ss_pred CchhhhhHHHHHhhcCChHhh----hhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCC
Q 000911 741 PNPAIRRGSALALGVLPYELL----ANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSG 816 (1229)
Q Consensus 741 ~~~~~r~G~alaLG~lp~~~l----~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~ 816 (1229)
++--.|+-.+.++-.+-..+- ...+-.++..|. .+..++.|-|+.+.|..+...+..
T Consensus 569 ~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~---------~D~vanVR~nvak~L~~i~~~L~~---------- 629 (759)
T KOG0211|consen 569 DNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLV---------KDPVANVRINVAKHLPKILKLLDE---------- 629 (759)
T ss_pred cccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhc---------cCCchhhhhhHHHHHHHHHhhcch----------
Confidence 445556655555543322221 122222222221 455689999999999998765421
Q ss_pred chhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHH
Q 000911 817 EDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 817 ~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~ 865 (1229)
...=+.+..+++--.+|+-+| ||-.|+.+...+-
T Consensus 630 -----------~~~~~~v~pll~~L~~d~~~d----vr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 630 -----------SVRDEEVLPLLETLSSDQELD----VRYRAILAFGSIE 663 (759)
T ss_pred -----------HHHHHHHHHHHHHhccCcccc----hhHHHHHHHHHHH
Confidence 111122333444445599999 6888998888764
No 29
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=91.00 E-value=58 Score=41.89 Aligned_cols=165 Identities=16% Similarity=0.212 Sum_probs=101.0
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCc--hhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHh
Q 000911 659 GEIMRSAVSRFIECISLSFVSLP--EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYME 736 (1229)
Q Consensus 659 gel~r~A~c~lI~~ls~s~~pl~--~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~ 736 (1229)
...+|+-...+|.+++.. +.-+ ++.....-.+|-+.|-...+++.-+...|+.+++...-...-......++.+..-
T Consensus 812 sa~vRqqaadlis~la~V-lktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltP 890 (1172)
T KOG0213|consen 812 SAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTP 890 (1172)
T ss_pred ChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchH
Confidence 456788888999887631 1111 2345666678889999999999988888888877654111001122566666666
Q ss_pred hcCCCchhhhhHHHHHhhcC----ChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhcccccccc
Q 000911 737 QLTDPNPAIRRGSALALGVL----PYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSL 812 (1229)
Q Consensus 737 ~l~~~~~~~r~G~alaLG~l----p~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~ 812 (1229)
-|++.++-..-.-+-.+|.+ |-+...-.|..|.=.|+...+ .. .-|.||+|+..++-|..-+|-
T Consensus 891 ILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk-ah-----kK~iRRaa~nTfG~IakaIGP------ 958 (1172)
T KOG0213|consen 891 ILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK-AH-----KKEIRRAAVNTFGYIAKAIGP------ 958 (1172)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHhhhhHHHHhcCH------
Confidence 66655444443334444443 333333457777766665532 12 268999999999988876652
Q ss_pred ccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHH
Q 000911 813 IHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWV 853 (1229)
Q Consensus 813 ~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwV 853 (1229)
..|+.+|++.|.= -+++--||+-|
T Consensus 959 ---------------qdVLatLlnnLkv--qeRq~RvcTtv 982 (1172)
T KOG0213|consen 959 ---------------QDVLATLLNNLKV--QERQNRVCTTV 982 (1172)
T ss_pred ---------------HHHHHHHHhcchH--HHHHhchhhhh
Confidence 3577888877752 23444466655
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.55 E-value=0.16 Score=48.88 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=76.2
Q ss_pred HHHHHHhccCCCCchhHHHhhhhhhhhHhhcCh---hhHH-HHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCCCC
Q 000911 385 IIEILLSGLRDTDTVVRWSAAKGIGRITSCLTS---SLSE-EVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSS 460 (1229)
Q Consensus 385 iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~---~~a~-qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p~~ 460 (1229)
+|..|+.-|.+.+..+|+.+...++.++..-|. .+.+ .++..+++.++.. ++..-...+-+|+.|+..+-..+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcHHHHHH
Confidence 677788888899999999999999999987443 3444 7888888888653 3333456788999998865311111
Q ss_pred c--cchHHHHHHhheEeeccccccCCccccchhhHHHHHhh
Q 000911 461 L--PKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFG 499 (1229)
Q Consensus 461 L--~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAla 499 (1229)
+ ..+++.+.+.|..+. ..+|..||+++|.++
T Consensus 87 ~~~~g~l~~l~~~l~~~~--------~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSN--------EDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCC--------HHHHHHHHHHHHHhh
Confidence 1 346788877776542 358899999888774
No 31
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.39 E-value=9.4 Score=48.27 Aligned_cols=223 Identities=21% Similarity=0.218 Sum_probs=127.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCCCCCCcchHHHhhhcCCCcccCcCCCCChhHHHhhhcCchhhHHHHhhcceeeccc
Q 000911 914 AVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGG 993 (1229)
Q Consensus 914 a~EKiDrvR~~A~~~l~~ll~~~~~~~pip~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~~y~~~ll~GLv~S~Gg 993 (1229)
+++-+|-||..|.-||++++... | ++++. -.| +.|++.||+=.. .|+++++-+
T Consensus 157 S~~~~~~vkqkaALclL~L~r~s-p-----------Dl~~~---~~W------~~riv~LL~D~~------~gv~ta~~s 209 (938)
T KOG1077|consen 157 SGSSMDYVKQKAALCLLRLFRKS-P-----------DLVNP---GEW------AQRIVHLLDDQH------MGVVTAATS 209 (938)
T ss_pred CCcchHHHHHHHHHHHHHHHhcC-c-----------cccCh---hhH------HHHHHHHhCccc------cceeeehHH
Confidence 67889999999999999998764 2 11221 137 789999997443 577776544
Q ss_pred CccchHHHHHHHHHHHHhccccccchhcc-hHHHHHHHHHHHHHHhhcCCCc-------eeccHHHH-HHHHHhcccccc
Q 000911 994 LQESLRKASISALLEYLQAGETEDLDARS-SREYMLYNDILWVLQHYRRCDR-------VIVPTLKT-IESLFSKRIFLN 1064 (1229)
Q Consensus 994 lteslvk~S~~aL~~yl~~~~~~~~~~~~-~~l~~~~~~ll~il~~~~~~dR-------v~vP~L~t-l~~Ll~~g~f~~ 1064 (1229)
+-|-+++. . ++.. ..+..-...|..+. .....+| |=-|+|.+ +-.||. ++..
T Consensus 210 Li~~lvk~---------------~-p~~yk~~~~~avs~L~riv-~~~~t~~qdYTyy~vP~PWL~vKl~rlLq--~~p~ 270 (938)
T KOG1077|consen 210 LIEALVKK---------------N-PESYKTCLPLAVSRLSRIV-VVVGTSLQDYTYYFVPAPWLQVKLLRLLQ--IYPT 270 (938)
T ss_pred HHHHHHHc---------------C-CHHHhhhHHHHHHHHHHHH-hhcccchhhceeecCCChHHHHHHHHHHH--hCCC
Confidence 43333332 1 1111 11222222233332 2234443 33455554 233333 3332
Q ss_pred ccCCchhHHHHHHHHHHHH---HH---ccCChHHHHHHHHHHHHhhc------CCchhHHHHHHHHHHHhcCCChhhhHH
Q 000911 1065 MEVHTPIFCAGVLDSLAVE---LK---ATKDFSKLYAGIAILGYIAS------VSDPISTRAFSYLLNFLGHRFPKIRKA 1132 (1229)
Q Consensus 1065 ~~~~~~~~~~~l~~l~~~e---~~---~sk~v~kL~~~i~v~~~l~~------~~~~~~~~a~~~L~~lL~H~~PkVR~~ 1132 (1229)
.++. +--.++.+....- .. ++||++.--+.=.|+...+. -+.+.-.++..+|+.||.||=+.||..
T Consensus 271 ~~D~--~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYL 348 (938)
T KOG1077|consen 271 PEDP--STRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYL 348 (938)
T ss_pred CCCc--hHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhh
Confidence 2222 2223333333322 23 67788765555455544332 234788999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchh--hHHHHHhhhhhcCCCCchhHhHHHHHHHHHHhCCCCC
Q 000911 1133 SAEQVYLVLLQNGNILEED--KTEKALEIIGETCWEGDMNVVKHQRLELYNLAGVGVG 1188 (1229)
Q Consensus 1133 ~Ae~lY~~Ll~~~d~~~~e--~~d~~~~~L~~tdW~~~~~~~r~~r~~l~~l~gv~~p 1188 (1229)
+=|-|-.+. +.+..+++= ..|.++..|+. +-|+...|...+-||.|-.+..-
T Consensus 349 aLEsm~~L~-ss~~s~davK~h~d~Ii~sLkt---erDvSirrravDLLY~mcD~~Na 402 (938)
T KOG1077|consen 349 ALESMCKLA-SSEFSIDAVKKHQDTIINSLKT---ERDVSIRRRAVDLLYAMCDVSNA 402 (938)
T ss_pred hHHHHHHHH-hccchHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHhchhhH
Confidence 999887653 344333321 12445555553 55778888888888888777554
No 32
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.30 E-value=67 Score=41.48 Aligned_cols=452 Identities=18% Similarity=0.195 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChh----hHHHHHHHHHhhcCCC----CCCCchhhHHHHHHHHH
Q 000911 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS----LSEEVFSSVLELFSPG----EGDGSWHGGCLALAELA 451 (1229)
Q Consensus 380 e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~----~a~qVv~~vl~~f~~~----~~~~~WHG~cLaLAEL~ 451 (1229)
++|+-|+.++=+.+++.|-.-|=+|+=++|-|-.--.++ +..|-+-+++...+.. .+-.+|-= -.+++..
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtl--grI~d~l 437 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTL--GRIADFL 437 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHH--HHHHhhc
Confidence 578889999999999999999999999999998776554 5566666777665421 23345531 1233333
Q ss_pred hcCCCCCCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHh---h-------ccc-CccchHHHHHHHHHHHHH
Q 000911 452 RRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAF---G-------RAY-CHTDMRNILEQIAPHLLT 520 (1229)
Q Consensus 452 rrgll~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAl---a-------Ray-~~~~l~~~~~~la~~Lv~ 520 (1229)
-....+...++.+++++.++|.=+-|..+ =+||+| | +.- .++...|+.+.|...||-
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~DePrva~------------N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~ 505 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLNDEPRVAS------------NVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK 505 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhhhCchHHH------------HHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHh
Confidence 33334555788899999999987776642 246665 3 222 112345899999999998
Q ss_pred HHhc-C-CCchhhhhHHHHHHHhhccCCCCCCCccceeeeceeecccchhhHHHHHHHHhccccChHHHHHHHhhcccch
Q 000911 521 VACY-D-REVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICH 598 (1229)
Q Consensus 521 ~a~F-D-revniRRaAsAAfQE~VGR~G~~phGI~Iv~~~DyfaV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~H 598 (1229)
++=- | .+-|.|=||-.||=|+|- +|=..+++-+.++-.|.-.=++.-+. .
T Consensus 506 ~tdr~dgnqsNLR~AAYeALmElIk------------------------~st~~vy~~v~~~~l~il~kl~q~i~----~ 557 (859)
T KOG1241|consen 506 VTDRADGNQSNLRSAAYEALMELIK------------------------NSTDDVYPMVQKLTLVILEKLDQTIS----S 557 (859)
T ss_pred hccccccchhhHHHHHHHHHHHHHH------------------------cCcHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 8744 4 478999999999999972 11123333344432221111111111 0
Q ss_pred hccCCcCCCChhHHHHHHHH-HHHHHHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCch---hhHHHHHHHHHHHHh
Q 000911 599 WLTPFTLSTDLCTRHGATLA-AGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGG---EIMRSAVSRFIECIS 674 (1229)
Q Consensus 599 Wll~~~~s~dl~~RHGalLa-laei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~gg---el~r~A~c~lI~~ls 674 (1229)
-.+......++..-++.+.+ ++.|+..+. .. -.+..+.+.+++-++... +++| |-.--|++.+++++.
T Consensus 558 ~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~---~~-~~~~~d~iM~lflri~~s----~~s~~v~e~a~laV~tl~~~Lg 629 (859)
T KOG1241|consen 558 QILSLADRAQLNELQSLLCNTLQSIIRKVG---SD-IREVSDQIMGLFLRIFES----KRSAVVHEEAFLAVSTLAESLG 629 (859)
T ss_pred HhccHhhHHHHHHHHHHHHHHHHHHHHHcc---cc-chhHHHHHHHHHHHHHcC----CccccchHHHHHHHHHHHHHHh
Confidence 01111112234444555544 333333332 21 122334444444444322 2333 333447778888776
Q ss_pred hcCCCCchhHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCc------hhhh-
Q 000911 675 LSFVSLPEKTKRSLLDTLNENLRHP-NSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPN------PAIR- 746 (1229)
Q Consensus 675 ~s~~pl~~~~~~~~~~~l~~~L~~~-~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~------~~~r- 746 (1229)
.-- .+-...+...+...|++. +-.|-.+|+--+..+++..-... ..--+++.+..+..|++++ |..-
T Consensus 630 ~~F----~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i-~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS 704 (859)
T KOG1241|consen 630 KGF----AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDI-LPYCDELMTVLVQCLSSPNLHRNVKPAILS 704 (859)
T ss_pred HhH----HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHccCccccccccchHHH
Confidence 311 123355666677777444 44566666665666665431100 0011677788887776443 2221
Q ss_pred --hHHHHHhhcCChHhhhhhHHHHHHHHhhhc--ccCCC-CCCcc--HHHHHHHHHHHHHHHhhhccccccccccCCchh
Q 000911 747 --RGSALALGVLPYELLANSWRDVLLKLCSCC--LIEEN-PEDRD--TEARVNAVRGLVSVCETLTQSQENSLIHSGEDE 819 (1229)
Q Consensus 747 --~G~alaLG~lp~~~l~~~~~~il~~L~~~~--~~~~~-~~~~d--~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~ 819 (1229)
--.|+|+|.=+ .+++..|+..|..+. ..... -+..| -|-|-+++.+-+.|++-++.. ++.
T Consensus 705 ~FgDIAlaIg~~F----~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~--~~~------- 771 (859)
T KOG1241|consen 705 VFGDIALAIGADF----EPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTH--ADV------- 771 (859)
T ss_pred HHHHHHHHHHHhH----HHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcc--cch-------
Confidence 12366666533 345666666555543 22221 01112 488999999988888755421 111
Q ss_pred hhHhhhhHHHHHHHHHHhccccCCCCCCcc-hHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCcccccccc
Q 000911 820 ISLFHLIKNEVMTSLFKALDDYSVDNRGDV-GSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLF 898 (1229)
Q Consensus 820 ~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDV-GSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (1229)
..+..++.+++..++- +-.-+|+ |+-.| +|+.-|.++...+.+ ..-+.++
T Consensus 772 -----~~~~p~v~~I~sfi~~--I~~e~~~~~~~~~-~a~GlIgDL~~~fg~---------------------~~~~~~~ 822 (859)
T KOG1241|consen 772 -----MLVQPYVPHIISFIDR--IAAEPDVSEALHA-AALGLIGDLATMFGK---------------------GVIKLFL 822 (859)
T ss_pred -----hhhhcchHHHHHHHHH--HhcCcccchHHHH-HHHHHHHHHHHHccc---------------------chhhhhc
Confidence 1222333444444433 2344666 66555 455566666533320 1123455
Q ss_pred CHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000911 899 DANLATNLVAGIVKQAVEKMDKLREAAAKV 928 (1229)
Q Consensus 899 ~~~~~~~l~~~llrqa~EKiDrvR~~A~~~ 928 (1229)
+.+.+.+++.+-.|...-|.-..=..|.+.
T Consensus 823 ~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ 852 (859)
T KOG1241|consen 823 DEDWIKDFLNEGRKSSTQKTKDLARWATEE 852 (859)
T ss_pred chHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 667788888777766554444333333333
No 33
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.19 E-value=0.3 Score=47.37 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhc-CCCCCCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHH
Q 000911 441 HGGCLALAELARR-GLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLL 519 (1229)
Q Consensus 441 HG~cLaLAEL~rr-gll~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv 519 (1229)
+||+++||..+-- |--....+++++|.|.+++.=+..| ||=+||-.++-+++.... ++.++..+|+..|.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~r--------VRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSR--------VRYYACEALYNISKVARG-EILPYFNEIFDALC 74 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7999999998653 2224456788998887766544444 999999999999999875 55679999998876
Q ss_pred HHHhcCCCchhhhhHH
Q 000911 520 TVACYDREVNCRRAAA 535 (1229)
Q Consensus 520 ~~a~FDrevniRRaAs 535 (1229)
. .+-|++.++|-||.
T Consensus 75 k-l~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 75 K-LSADPDENVRSAAE 89 (97)
T ss_pred H-HHcCCchhHHHHHH
Confidence 5 67899999999884
No 34
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=88.99 E-value=9 Score=40.94 Aligned_cols=94 Identities=23% Similarity=0.330 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHH
Q 000911 786 DTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 786 d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~ 865 (1229)
+...|.|++.+++.+|...+ ..++.....+..+|.|=. .-||..|+..+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-------------------~~ve~~~~~l~~~L~D~~--------~~VR~~al~~Ls~Li 53 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-------------------NLVEPYLPNLYKCLRDED--------PLVRKTALLVLSHLI 53 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-------------------HHHHhHHHHHHHHHCCCC--------HHHHHHHHHHHHHHH
Confidence 46789999999999987542 467778888889998653 789999999998764
Q ss_pred HHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 000911 866 YILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNK 936 (1229)
Q Consensus 866 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~ 936 (1229)
+. .++.. -..++..+++...+.=..||..|..+|..+....
T Consensus 54 --~~--------------------------d~ik~--k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 54 --LE--------------------------DMIKV--KGQLFSRILKLLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred --Hc--------------------------Cceee--hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 21 11111 1344566777778888899999999999998763
No 35
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.71 E-value=4 Score=51.61 Aligned_cols=178 Identities=18% Similarity=0.170 Sum_probs=99.3
Q ss_pred ChhHHHHHHHHHHHH---------HHHHhccc--------------------ccCChhHHHHHHhhhhhhhhhhcccCCc
Q 000911 608 DLCTRHGATLAAGEV---------VLALCKYD--------------------YALPADKQKIVAGIVPGIEKARLYRGKG 658 (1229)
Q Consensus 608 dl~~RHGalLalaei---------~~al~~~~--------------------~~~~~~~~~~i~~i~~~~~~~~l~rg~g 658 (1229)
+-..|||+.|++|=. ...+...- ..++.+.++.+.+.-+.....+..||.+
T Consensus 427 ~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~ 506 (929)
T KOG2062|consen 427 NEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLA 506 (929)
T ss_pred chhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 668999999998733 23332110 0114455666665555555556666632
Q ss_pred hh--hH---H-HHHHHHHHHHhhcCCCCchh--------------HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 000911 659 GE--IM---R-SAVSRFIECISLSFVSLPEK--------------TKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTY 718 (1229)
Q Consensus 659 ge--l~---r-~A~c~lI~~ls~s~~pl~~~--------------~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y 718 (1229)
=- ++ | +-+=.+|..+...+=|+-.. -......+|.-..+..+++|+-+|+-|+.-.+
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl--- 583 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL--- 583 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeE---
Confidence 11 10 1 12223565555444333110 01223445555678999999999999985221
Q ss_pred hccCCcchhhhhHHHHHhhcC-CCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHH
Q 000911 719 MVAADSGVVGGISLKYMEQLT-DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGL 797 (1229)
Q Consensus 719 ~~~~~~~~~~~ii~~~~~~l~-~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL 797 (1229)
+.++ +....+++-|. +-|+..|.|.|+|||..=.-. + .++.++.|--.+ .+.--=.|+.|+-++
T Consensus 584 -~~dp-----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt--G-~~eAi~lLepl~------~D~~~fVRQgAlIa~ 648 (929)
T KOG2062|consen 584 -FRDP-----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGT--G-LKEAINLLEPLT------SDPVDFVRQGALIAL 648 (929)
T ss_pred -ecCh-----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC--C-cHHHHHHHhhhh------cChHHHHHHHHHHHH
Confidence 2222 45566777775 889999999999999753221 1 222332221111 111234799999999
Q ss_pred HHHHhh
Q 000911 798 VSVCET 803 (1229)
Q Consensus 798 ~~i~~t 803 (1229)
+-|..+
T Consensus 649 amIm~Q 654 (929)
T KOG2062|consen 649 AMIMIQ 654 (929)
T ss_pred HHHHHh
Confidence 987644
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=88.11 E-value=27 Score=43.71 Aligned_cols=345 Identities=15% Similarity=0.133 Sum_probs=177.1
Q ss_pred HHhhcCCCCCCCchhhHHHHHHHHHhcCCCCCCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCc-c
Q 000911 427 VLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCH-T 505 (1229)
Q Consensus 427 vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~-~ 505 (1229)
++++|+....+. .-=.|=.|..+.. ..-+.+.++++.+.+.++|.=.. ..||--+ ||.+.|.-.. +
T Consensus 43 lf~~L~~~~~e~-v~~~~~iL~~~l~-~~~~~~l~~~~~~~L~~gL~h~~--------~~Vr~l~---l~~l~~~~~~~~ 109 (503)
T PF10508_consen 43 LFDCLNTSNREQ-VELICDILKRLLS-ALSPDSLLPQYQPFLQRGLTHPS--------PKVRRLA---LKQLGRIARHSE 109 (503)
T ss_pred HHHHHhhcChHH-HHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcCCC--------HHHHHHH---HHHHHHHhcCCH
Confidence 666776542222 1223333333333 33333347888888877775322 3567555 4557775332 2
Q ss_pred chHH-HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhhccC-C---CCCCCccceeeeceeec---ccchhhHHHHHHHH
Q 000911 506 DMRN-ILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQ-G---NYPHGIDIVNTADYFSL---SSRVYSYLHVAVFI 577 (1229)
Q Consensus 506 ~l~~-~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~VGR~-G---~~phGI~Iv~~~DyfaV---~~r~~ayl~va~~v 577 (1229)
.... ..+.=...+|+.++-|+|..|-++|+.++-.+.+.. | .|+.+. +-...+...- ..|-+. .++...+
T Consensus 110 ~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~~~~~~~vR~Rv-~el~v~i 187 (503)
T PF10508_consen 110 GAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLMSQSSDIVRCRV-YELLVEI 187 (503)
T ss_pred HHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHHhccCHHHHHHH-HHHHHHH
Confidence 2222 233335567888999999999999999999887654 2 133332 1112222211 234444 4556666
Q ss_pred hccc----cChH--HHHHHHhhcccchhccCCcCCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhh
Q 000911 578 AQYE----GYLY--PFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKA 651 (1229)
Q Consensus 578 A~~~----~Y~~--~li~hLl~~Kl~HWll~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~ 651 (1229)
++.. +|.. .+++.|+ ....+.|+-.+=-++-.+.++...=+....-.....+..+..++......
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll---------~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLL---------KELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHH---------HHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccC
Confidence 6542 2222 1444444 34456888887777766666654111110001223444454444443322
Q ss_pred hcccCCchhhHHHHHHHHHHHHhhcCCCCchhHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh-----hccCC
Q 000911 652 RLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK---RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTY-----MVAAD 723 (1229)
Q Consensus 652 ~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~---~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y-----~~~~~ 723 (1229)
. +.+.++-.+.-+|...++... | ..+. ..+...+.+.+...+...+..|.+++..+...- +....
T Consensus 259 p----~~~~~~l~g~~~f~g~la~~~-~--~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~ 331 (503)
T PF10508_consen 259 P----RLSSLLLPGRMKFFGNLARVS-P--QEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQ 331 (503)
T ss_pred C----cccchhhhhHHHHHHHHHhcC-h--HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 2 246677777778888877531 2 2233 344455567778899999999999999876431 00001
Q ss_pred cchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhh---hhHHHHHHHHhhhcccCCC-------CCCccHHHHHHH
Q 000911 724 SGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLA---NSWRDVLLKLCSCCLIEEN-------PEDRDTEARVNA 793 (1229)
Q Consensus 724 ~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~---~~~~~il~~L~~~~~~~~~-------~~~~d~E~R~~a 793 (1229)
+.....+++.+....++.....+.-..-||+.+-..--. +..-.+.+.+-......+. ....+.|.|..+
T Consensus 332 ~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~ 411 (503)
T PF10508_consen 332 GPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAA 411 (503)
T ss_pred chHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHH
Confidence 112245555666555544433444445555554111100 0111111111111000000 012368999999
Q ss_pred HHHHHHHHh
Q 000911 794 VRGLVSVCE 802 (1229)
Q Consensus 794 v~sL~~i~~ 802 (1229)
.+-|..+|.
T Consensus 412 ~~~l~~l~~ 420 (503)
T PF10508_consen 412 YRLLQALAA 420 (503)
T ss_pred HHHHHHHhc
Confidence 998888775
No 37
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.92 E-value=0.91 Score=44.07 Aligned_cols=55 Identities=24% Similarity=0.429 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhh---HHHHHHHHHhhcC
Q 000911 378 VPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL---SEEVFSSVLELFS 432 (1229)
Q Consensus 378 v~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~---a~qVv~~vl~~f~ 432 (1229)
+.+-+++||.-+|..+.|.|..|||.|..++..|+.-...++ -.+|.+.+..++.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 568899999999999999999999999999999998876654 4667777666654
No 38
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=86.57 E-value=3.9 Score=37.56 Aligned_cols=79 Identities=27% Similarity=0.333 Sum_probs=57.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhc
Q 000911 697 RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCC 776 (1229)
Q Consensus 697 ~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~ 776 (1229)
.+++..++..|+.++..+ ...+.+..+++.++++++..|+-.+.+||.+.. .+.+..|+...
T Consensus 10 ~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~~~~~~L~~~l 71 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD-------PEAIPALIKLL 71 (88)
T ss_dssp TSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------HHTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHH
Confidence 799999999988887521 124677778888899999999999999999852 23444555543
Q ss_pred ccCCCCCCccHHHHHHHHHHHH
Q 000911 777 LIEENPEDRDTEARVNAVRGLV 798 (1229)
Q Consensus 777 ~~~~~~~~~d~E~R~~av~sL~ 798 (1229)
. +..+...|..|+++|+
T Consensus 72 ~-----~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 72 Q-----DDDDEVVREAAAEALG 88 (88)
T ss_dssp T-----C-SSHHHHHHHHHHHH
T ss_pred c-----CCCcHHHHHHHHhhcC
Confidence 2 2235667999999885
No 39
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.66 E-value=26 Score=38.38 Aligned_cols=183 Identities=18% Similarity=0.197 Sum_probs=96.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhc-CCCCchh
Q 000911 605 LSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLS-FVSLPEK 683 (1229)
Q Consensus 605 ~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s-~~pl~~~ 683 (1229)
.+.|-..|.-++.-+-.++.+- ......+.....+.++...+.+. ....+.- +...+|.++..++.. +-++ +.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~--l~d~Rs~-v~~~A~~~l~~l~~~l~~~~-~~ 90 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQ--LSDLRSK-VSKTACQLLSDLARQLGSHF-EP 90 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH---S-HH----HHHHHHHHHHHHHHHHGGGG-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHH--HhhhHHH-HHHHHHHHHHHHHHHHhHhH-HH
Confidence 3456678888888887777654 11222344555555444433221 1111233 445556777766642 1111 11
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHH-hhcCCCchhhhhHHHHHhhcC----C-
Q 000911 684 TKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYM-EQLTDPNPAIRRGSALALGVL----P- 757 (1229)
Q Consensus 684 ~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~-~~l~~~~~~~r~G~alaLG~l----p- 757 (1229)
..+.+...|-..+.+....|+++|..++..++..+-. ..+++..++ ...++.++..|.+.+..+..+ |
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455666666666888999999999999988874210 135534444 446688888888877665543 3
Q ss_pred -hHhhhh--hHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhc
Q 000911 758 -YELLAN--SWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLT 805 (1229)
Q Consensus 758 -~~~l~~--~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~ 805 (1229)
...+.. .++.++..+..+. .+.+.+.|..|-+++..+.+..|
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l------~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLL------SDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHH------TSS-HHHHHHHHHHHHHHHHHH-
T ss_pred hHhhhcccchHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHCC
Confidence 111221 2356666666664 45689999999999998766554
No 40
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.17 E-value=99 Score=37.61 Aligned_cols=351 Identities=16% Similarity=0.170 Sum_probs=175.7
Q ss_pred HHhccCCCCc---hhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCC----CCCCCchhhHHHHHHHHHhcCCCCC---
Q 000911 389 LLSGLRDTDT---VVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSP----GEGDGSWHGGCLALAELARRGLLLP--- 458 (1229)
Q Consensus 389 LL~~L~d~dT---~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~----~~~~~~WHG~cLaLAEL~rrgll~p--- 458 (1229)
|+..|.|.++ .-.+..=+.++.|+.. +++.+.++-.+++.++. ..+..--|..|-+|..+..++.--.
T Consensus 4 ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 4 LLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred HHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 4444444443 2333333444444332 23344444455554422 2233445788888888877765333
Q ss_pred C--C-ccc-hHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhH
Q 000911 459 S--S-LPK-VVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAA 534 (1229)
Q Consensus 459 ~--~-L~~-vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaA 534 (1229)
+ . ..+ ++|.+.+........+.. ...++=+++.-+|=.+.|..+++.=+.+++.+....+
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~--------------- 145 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFL--------------- 145 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHc---------------
Confidence 1 1 233 667775555444433322 3345666777777777777776544444444333332
Q ss_pred HHHHHHhhccCCCCCCCccceeeeceeecc-cchhhHHHHHHHHhccc-----cChHHHHHHHhhcccchhccCCcCCCC
Q 000911 535 AAAFQENVGRQGNYPHGIDIVNTADYFSLS-SRVYSYLHVAVFIAQYE-----GYLYPFVDELLYNKICHWLTPFTLSTD 608 (1229)
Q Consensus 535 sAAfQE~VGR~G~~phGI~Iv~~~DyfaV~-~r~~ayl~va~~vA~~~-----~Y~~~li~hLl~~Kl~HWll~~~~s~d 608 (1229)
..+-+..|+.... ... ..++...-.+..+++++ .+-..+++.|+. |... +.+
T Consensus 146 ------~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~-----~~~~---~~~ 203 (415)
T PF12460_consen 146 ------SPKSFSPFQPSSS--------TISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLN-----LALS---SED 203 (415)
T ss_pred ------cccccCCCCcccc--------ccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHH-----HHHc---CCC
Confidence 1111122221111 111 22222233333444442 144457777764 4222 234
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccCChhHHHH-HHhhhhhhhhhhcccCCchhhHHHHHHHH--HH-HHhhcCCCCchhH
Q 000911 609 LCTRHGATLAAGEVVLALCKYDYALPADKQKI-VAGIVPGIEKARLYRGKGGEIMRSAVSRF--IE-CISLSFVSLPEKT 684 (1229)
Q Consensus 609 l~~RHGalLalaei~~al~~~~~~~~~~~~~~-i~~i~~~~~~~~l~rg~ggel~r~A~c~l--I~-~ls~s~~pl~~~~ 684 (1229)
...|.++.-++|.++..+.. ++..+. +......+ -....++....++.-+ |. .+-...=|...
T Consensus 204 ~~~~~~~~~~la~LvNK~~~------~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-- 270 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPD------DDDLDEFLDSLLQSI-----SSSEDSELRPQALEILIWITKALVMRGHPLAT-- 270 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCC------hhhHHHHHHHHHhhh-----cccCCcchhHHHHHHHHHHHHHHHHcCCchHH--
Confidence 78888888888888765422 111122 11122221 1122333444444443 22 12222223222
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH---hhccCCcchh---------hhhHHHHHhhcCCCchhhhhHHHHH
Q 000911 685 KRSLLDTLNENLRHPNSQIQNAAVKALKPFVQT---YMVAADSGVV---------GGISLKYMEQLTDPNPAIRRGSALA 752 (1229)
Q Consensus 685 ~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~---y~~~~~~~~~---------~~ii~~~~~~l~~~~~~~r~G~ala 752 (1229)
.|.+.+-+.|.+ +++...|++++.-++.. +......... ..++++.++..++.+...+.-|..|
T Consensus 271 --~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~A 346 (415)
T PF12460_consen 271 --ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTA 346 (415)
T ss_pred --HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Confidence 333334444455 67788888999887654 1111111111 4455555555554333344444444
Q ss_pred ----hhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHh
Q 000911 753 ----LGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 802 (1229)
Q Consensus 753 ----LG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~ 802 (1229)
|..+|..++.+++.+++-.|+.+. +..|.+.|.+++..|..++.
T Consensus 347 Ls~ll~~vP~~vl~~~l~~LlPLLlqsL------~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPELPTLLPLLLQSL------SLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHH
Confidence 555699998888888888888775 34467899999999998775
No 41
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=85 Score=40.06 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=45.6
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHhhccCCcc--hh---hhhHHHHHhhcCCCchhhhhHHHHHhhcCC
Q 000911 694 ENLRHPNSQIQNAAVKALKPFVQTYMVAADSG--VV---GGISLKYMEQLTDPNPAIRRGSALALGVLP 757 (1229)
Q Consensus 694 ~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~--~~---~~ii~~~~~~l~~~~~~~r~G~alaLG~lp 757 (1229)
+-++..++.|+.+|++++.-+-+.|-...+.+ .. +..+.+.++.+.+.....|-=.+.+||.+-
T Consensus 241 ~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~ 309 (823)
T KOG2259|consen 241 KHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE 309 (823)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH
Confidence 34588899999999998876555442111111 11 677778888888888888988999999873
No 42
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=82.87 E-value=1.3 Score=40.85 Aligned_cols=57 Identities=30% Similarity=0.475 Sum_probs=38.7
Q ss_pred HHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHH
Q 000911 384 EIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLAL 447 (1229)
Q Consensus 384 ~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaL 447 (1229)
+++..|+..++|.|..||.+|+.++|+|. ..+++..+.+.+....+....+-++-+|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 55666777779999999999999999995 2457777777775443222223344444
No 43
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.96 E-value=2.6e+02 Score=39.25 Aligned_cols=483 Identities=19% Similarity=0.173 Sum_probs=232.6
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhH-HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCCC
Q 000911 381 ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLS-EEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPS 459 (1229)
Q Consensus 381 ~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a-~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p~ 459 (1229)
...-.+..++..|+..-..||=.|=|.++.|++-=|.-+. -+|-.+|...|.... .+.--+ ||==++|.-+--|+
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dss--asVREA--aldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSS--ASVREA--ALDLVGRFVLSIPE 888 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccch--hHHHHH--HHHHHhhhhhccHH
Confidence 4455677888888989999999999999999987554433 245556655553221 000000 11112333332344
Q ss_pred CccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHH
Q 000911 460 SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQ 539 (1229)
Q Consensus 460 ~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAfQ 539 (1229)
..++.-..+.. +---.|..||==+==+.==+.=.|. ++..++..+|.- +.=+=|.|.||-.=+.-.|+
T Consensus 889 ~~~qyY~~i~e--------rIlDtgvsVRKRvIKIlrdic~e~p--df~~i~~~cakm--lrRv~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 889 LIFQYYDQIIE--------RILDTGVSVRKRVIKILRDICEETP--DFSKIVDMCAKM--LRRVNDEEGNIKKLVRETFL 956 (1692)
T ss_pred HHHHHHHHHHh--------hcCCCchhHHHHHHHHHHHHHHhCC--ChhhHHHHHHHH--HHHhccchhHHHHHHHHHHH
Confidence 44443333311 1123466666544333322222222 343344444443 34567999999999999999
Q ss_pred HhhccCCCCCCCccceeeeceeecccchhhHHHHHHHHhcc---ccChHHHHHHHhhcccc------hh--ccCCcCCCC
Q 000911 540 ENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQY---EGYLYPFVDELLYNKIC------HW--LTPFTLSTD 608 (1229)
Q Consensus 540 E~VGR~G~~phGI~Iv~~~DyfaV~~r~~ayl~va~~vA~~---~~Y~~~li~hLl~~Kl~------HW--ll~~~~s~d 608 (1229)
++= +--. |+ .+++. |--+.-++++.+.-+++ ..|-+.+++|++....- |= .+.......
T Consensus 957 klW--F~p~-~~------~~d~~-~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~ 1026 (1692)
T KOG1020|consen 957 KLW--FTPV-PE------VNDQP-AKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVL 1026 (1692)
T ss_pred HHh--ccCC-Cc------ccccH-HHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHH
Confidence 872 1111 11 12221 22222333333333333 37888899999873321 11 000000000
Q ss_pred h--------------------hHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHH
Q 000911 609 L--------------------CTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSR 668 (1229)
Q Consensus 609 l--------------------~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~ 668 (1229)
- ..--|-++++-.++..|.+....+-.. +.+..+-|-+ +.+-. . .+-..
T Consensus 1027 ~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~--khv~tL~PYL------~s~~~--t-~~~~~ 1095 (1692)
T KOG1020|consen 1027 NLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTK--KHVITLQPYL------TSKAS--T-IEEAQ 1095 (1692)
T ss_pred HHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccH--HHHHHhhhHH------hcccc--c-hHHHH
Confidence 0 122233444444444443221111000 1111111111 11100 0 01122
Q ss_pred HHHH---HhhcCCCCchhHHHHHHHHHHhhc-----CCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcC-
Q 000911 669 FIEC---ISLSFVSLPEKTKRSLLDTLNENL-----RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT- 739 (1229)
Q Consensus 669 lI~~---ls~s~~pl~~~~~~~~~~~l~~~L-----~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~- 739 (1229)
|+.. +-.+-+|+-......++..|++.| ++.-..|. .|+..+.+++...-. ........++.|.+.+.
T Consensus 1096 fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~-~~vsCl~sl~~k~~~--~~~~v~~cf~~~~k~le~ 1172 (1692)
T KOG1020|consen 1096 FLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVV-EAVSCLGSLATKRTD--GAKVVKACFSCYLKLLEV 1172 (1692)
T ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHH
Confidence 3322 223456776555566777777665 44444443 344455555443211 12223677888877662
Q ss_pred ---C--Cc------hhhhhHHHHHhhcCChHhh------h---------hhHHHHHHHHhhhcccCCCCCCccHHHHHHH
Q 000911 740 ---D--PN------PAIRRGSALALGVLPYELL------A---------NSWRDVLLKLCSCCLIEENPEDRDTEARVNA 793 (1229)
Q Consensus 740 ---~--~~------~~~r~G~alaLG~lp~~~l------~---------~~~~~il~~L~~~~~~~~~~~~~d~E~R~~a 793 (1229)
+ .| +..+| .+..+|.|-+..- . .....++..|..-++ ..+.+-|+-|
T Consensus 1173 ~k~s~~en~~~~~~p~l~R-siftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k------~~~~~lR~~a 1245 (1692)
T KOG1020|consen 1173 IKSSNNENADIVNFPKLQR-SIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSK------DKDGELRRKA 1245 (1692)
T ss_pred HHhccccccchhhhHHHHH-HHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHH------hhhhHHHHHH
Confidence 2 22 22333 4556677655321 0 012334444444333 2348999999
Q ss_pred HHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCC
Q 000911 794 VRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDF 873 (1229)
Q Consensus 794 v~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~ 873 (1229)
+.+|+.+|-... + .+....+-.+++.. |. |..-|++ -+..+|+.++.. ++...-.
T Consensus 1246 l~~Lg~~ci~hp------~--------l~~~~~v~nly~~i---la----~~n~~~~--~ki~~l~n~~~y--L~eee~~ 1300 (1692)
T KOG1020|consen 1246 LINLGFICIQHP------S--------LFTSREVLNLYDEI---LA----DDNSDIK--SKIQLLQNLELY--LLEEEKK 1300 (1692)
T ss_pred HHHHHHHHhhCc------h--------hhhhHHHHHHHHHH---Hh----hhcccHH--HHHHHHHHHHHH--HHHHHHH
Confidence 999999996421 1 22233333333333 33 2344555 466666666643 3331111
Q ss_pred CCCCCC------Ccccc--ccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 000911 874 VPSPEK------PQEVK--SELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNK 936 (1229)
Q Consensus 874 ~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~ 936 (1229)
.+.+++ .++.. ....+.+..... ....+++....+|+.-++-+=|++|..|.+++.-+++..
T Consensus 1301 l~~~~~~w~~~~k~edlkem~~v~sg~~s~~-~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QG 1370 (1692)
T KOG1020|consen 1301 LRNKGKNWTKSNKSEDLKEMLDVSSGMGSSD-GVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQG 1370 (1692)
T ss_pred HHhcccchhhhhhHHHHHhhccccccccccc-chHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc
Confidence 111122 00000 001111111111 225688999999999999999999999999999998775
No 44
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.51 E-value=89 Score=41.24 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=100.7
Q ss_pred hhHHHHHhhcC----CCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhh
Q 000911 729 GISLKYMEQLT----DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETL 804 (1229)
Q Consensus 729 ~ii~~~~~~l~----~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~ 804 (1229)
.+++...+... +....--.|-+..||.+|...+-+.+..++-.|+.+. ...|++.|+.++..|.......
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L------s~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL------SMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc------CCCccchhhhHhhhhhHHHHhc
Confidence 45555555554 2334445566777889999999888888888888774 4568999999999988765432
Q ss_pred ccccccccccCCchhhhHhhhhHHHHHHHHHHhc--cccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCcc
Q 000911 805 TQSQENSLIHSGEDEISLFHLIKNEVMTSLFKAL--DDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQE 882 (1229)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L--~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~ 882 (1229)
+ .+....++.++-.++.-= +||- ---||+.|+++|..++..+
T Consensus 941 ~---------------tL~t~~~~Tlvp~lLsls~~~~n~-------~~~VR~~ALqcL~aL~~~~-------------- 984 (1030)
T KOG1967|consen 941 E---------------TLQTEHLSTLVPYLLSLSSDNDNN-------MMVVREDALQCLNALTRRL-------------- 984 (1030)
T ss_pred c---------------ccchHHHhHHHHHHHhcCCCCCcc-------hhHHHHHHHHHHHHHhccC--------------
Confidence 2 233455666776665432 4443 3459999999998876221
Q ss_pred ccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000911 883 VKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLR 930 (1229)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~ 930 (1229)
+...+ -.+..+++.+|.+---.|=-.||.+|.++=+
T Consensus 985 -----------P~~~l-~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 985 -----------PTKSL-LSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred -----------CCccc-ccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 11222 1235678888999999999999999977543
No 45
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=80.38 E-value=58 Score=38.17 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=56.7
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCC-cchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhh-----
Q 000911 688 LLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAAD-SGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELL----- 761 (1229)
Q Consensus 688 ~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~-~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l----- 761 (1229)
+.+.|+. +.+.+...+++|-+++..++...|..+- ......++....+.++.+....+.=.+.++|.+.-.+-
T Consensus 45 L~~~Id~-l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDL-LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 4444443 3666788999998888887766554311 11124566666666664433222222233333322221
Q ss_pred hhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHH
Q 000911 762 ANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVC 801 (1229)
Q Consensus 762 ~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~ 801 (1229)
..-+..+...|...+... ...+..|..|+.+|+-++
T Consensus 124 ~ei~~~~~~~L~~~l~d~----s~~~~~R~~~~~aLai~~ 159 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDS----SASPKARAACLEALAICT 159 (309)
T ss_pred HHHHHHHHHHHHHHHhCC----ccchHHHHHHHHHHHHHH
Confidence 111233333344333211 234788999999998754
No 46
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.03 E-value=47 Score=36.37 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCchhHHHH-HHHHHHHhcCCChhhhHHHHHHHHHHHHhcC---CCcch-hhHHHHHhhhhhcCCCCch
Q 000911 1095 AGIAILGYIASVSDPISTRA-FSYLLNFLGHRFPKIRKASAEQVYLVLLQNG---NILEE-DKTEKALEIIGETCWEGDM 1169 (1229)
Q Consensus 1095 ~~i~v~~~l~~~~~~~~~~a-~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll~~~---d~~~~-e~~d~~~~~L~~tdW~~~~ 1169 (1229)
++..++..++..- ..-.+. ...+...+.|+-|.+|..+++.++..+...+ +.+.. ..++.+...+...=.|++.
T Consensus 113 ~a~~~L~~i~~~~-~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~ 191 (228)
T PF12348_consen 113 AANNALDAIIESC-SYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADP 191 (228)
T ss_dssp HHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-H
T ss_pred HHHHHHHHHHHHC-CcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCH
Confidence 5556666666643 223455 5666669999999999999999999988777 22322 2245677777777767776
Q ss_pred hHhHHHHHHHHHHh
Q 000911 1170 NVVKHQRLELYNLA 1183 (1229)
Q Consensus 1170 ~~~r~~r~~l~~l~ 1183 (1229)
+.=+..|+-+..+.
T Consensus 192 ~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 192 EVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 65555555555443
No 47
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=79.91 E-value=78 Score=33.82 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChH-h--hhhhHHHHHHHHhhhc
Q 000911 700 NSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYE-L--LANSWRDVLLKLCSCC 776 (1229)
Q Consensus 700 ~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~-~--l~~~~~~il~~L~~~~ 776 (1229)
++.|+..+.-++..|+..|= ...+..++.....|+++++..|+.....|.-|-.. + .++. ++..+..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~---l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ---LFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh---hhHHHHHHH
Confidence 35788889999988888751 12244555555667899999999888887665321 1 1222 222333332
Q ss_pred ccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCC-cchHHHHH
Q 000911 777 LIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRG-DVGSWVRE 855 (1229)
Q Consensus 777 ~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RG-DVGSwVRe 855 (1229)
.+.+.+.|..|...+..+....+ ...+..++--++..|++|+.+.-. .++.--|.
T Consensus 73 ------~D~~~~Ir~~A~~~~~e~~~~~~------------------~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~ 128 (178)
T PF12717_consen 73 ------VDENPEIRSLARSFFSELLKKRN------------------PNIIYNNFPELISSLNNCYEHPVYGPLSREKRK 128 (178)
T ss_pred ------cCCCHHHHHHHHHHHHHHHHhcc------------------chHHHHHHHHHHHHHhCccccccccccCHHHHH
Confidence 34468999999999998765321 122233333344566776654433 56666665
Q ss_pred HHHhHH
Q 000911 856 AAVDGL 861 (1229)
Q Consensus 856 aam~~l 861 (1229)
.-|+-+
T Consensus 129 ~I~~fl 134 (178)
T PF12717_consen 129 KIYKFL 134 (178)
T ss_pred HHHHHH
Confidence 555444
No 48
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=79.44 E-value=2.3e+02 Score=37.71 Aligned_cols=73 Identities=29% Similarity=0.372 Sum_probs=63.6
Q ss_pred HHHHHHH-HHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhc
Q 000911 380 DILEEII-EILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARR 453 (1229)
Q Consensus 380 e~vE~iI-~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rr 453 (1229)
+.+-..| +.|+++|.|..+.+|=++|-.++-|+.-.=|+---|++..|+++++. .+.++.||++=.|+||.+-
T Consensus 85 e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~e 158 (1005)
T KOG2274|consen 85 EEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS-GNENSIHGAMRVLAELSDE 158 (1005)
T ss_pred HHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHH
Confidence 4555555 78888999999999999999999999997777778999999999987 6889999999999999874
No 49
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.94 E-value=2e+02 Score=36.31 Aligned_cols=187 Identities=15% Similarity=0.160 Sum_probs=96.2
Q ss_pred chhhHHHHHHHHhcc---ccC--hHHHHHHHhhcccchhccCCcCCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHH
Q 000911 566 RVYSYLHVAVFIAQY---EGY--LYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKI 640 (1229)
Q Consensus 566 r~~ayl~va~~vA~~---~~Y--~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~ 640 (1229)
|+.|-+++-..|.++ ..| ...+|+.|.+ ....+.+-+.|-|.+.|+|.+..|+.. +...-
T Consensus 17 RKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~--------d~a~s~~~n~rkGgLiGlAA~~iaLg~-------~~~~Y 81 (675)
T KOG0212|consen 17 RKAAALELEKLVKDLVNNNDYDQIRKVISELAG--------DYAYSPHANMRKGGLIGLAAVAIALGI-------KDAGY 81 (675)
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH--------HhccCcccccccchHHHHHHHHHHhcc-------ccHHH
Confidence 555556666666554 123 2345666654 345567788888999999999999842 22124
Q ss_pred HHhhhhhhhhhhcccCCchhhHHHHHHHHHHH---HhhcCC-CCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 000911 641 VAGIVPGIEKARLYRGKGGEIMRSAVSRFIEC---ISLSFV-SLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQ 716 (1229)
Q Consensus 641 i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~---ls~s~~-pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~ 716 (1229)
+.++++.+.. -|.+ .-.-+|--+|.=..+ ++...+ +.-+++.+...+ -...++..|+.+| +-+..+++
T Consensus 82 ~~~iv~Pv~~--cf~D-~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k----lsaDsd~~V~~~a-eLLdRLik 153 (675)
T KOG0212|consen 82 LEKIVPPVLN--CFSD-QDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK----LSADSDQNVRGGA-ELLDRLIK 153 (675)
T ss_pred HHHhhHHHHH--hccC-ccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH----HhcCCccccccHH-HHHHHHHH
Confidence 4455554421 1211 112245555544433 333222 222222222222 2356666666554 56666666
Q ss_pred HhhccCCcc-hhhhhHHHHHhhcCCCchhhhhHH---HHHhhcCChHhhhhhHHHHHHHHhhh
Q 000911 717 TYMVAADSG-VVGGISLKYMEQLTDPNPAIRRGS---ALALGVLPYELLANSWRDVLLKLCSC 775 (1229)
Q Consensus 717 ~y~~~~~~~-~~~~ii~~~~~~l~~~~~~~r~G~---alaLG~lp~~~l~~~~~~il~~L~~~ 775 (1229)
..-..+... ...++++-.-+.+-..++++|+-- ...|-+.|..-+-+++..++++|...
T Consensus 154 dIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~ 216 (675)
T KOG0212|consen 154 DIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNM 216 (675)
T ss_pred HhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHH
Confidence 544332211 125555555555556677777632 33444555554444555566665544
No 50
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=77.86 E-value=2 Score=36.47 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhccCCCCchhHHHhhhhhhhh
Q 000911 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRI 411 (1229)
Q Consensus 379 ~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI 411 (1229)
.+.+.+++..|+..|+|.+..||.+|+.+||+|
T Consensus 23 ~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 23 QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 467889999999999999999999999999986
No 51
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.13 E-value=64 Score=43.50 Aligned_cols=259 Identities=18% Similarity=0.170 Sum_probs=161.1
Q ss_pred HHHHHHHHhhhc-CCchhhHHHHHHHHHhcCCChHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHhcChhh
Q 000911 201 RILGFCKDYLSN-AGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKV 279 (1229)
Q Consensus 201 rIl~l~~~yL~~-~~k~r~aAa~LLsrl~tR~D~~~~l~~fl~w~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~g~r~~ 279 (1229)
.++.+--.+.++ +.+.|-=|-.+|-.+.++|-.......+++...+.+.++-..+. .....+-|.+|..+++..+ .+
T Consensus 654 ~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~-~e 731 (1176)
T KOG1248|consen 654 KLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLS-AE 731 (1176)
T ss_pred HHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhcc-HH
Confidence 344333333344 57888888899999999977766688888888877765433222 2334488999999999777 34
Q ss_pred hhhhhHHHHH-hhhhhhccCCCCCchhHHHHHHHHHHHHhhcccCCCcccccccccccccccccccccccccccccCccc
Q 000911 280 LLDVIPVVWN-DASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSV 358 (1229)
Q Consensus 280 l~~~~~~i~~-~~~~l~~s~~~~~~~l~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rsL~~nl~~~~~~~~~~~~~~~~ 358 (1229)
...+++.... .+..+.+. |.-.|+..-+++.-||-+-. ++
T Consensus 732 ~~~~i~k~I~EvIL~~Ke~-----n~~aR~~Af~lL~~i~~i~~--------------~~-------------------- 772 (1176)
T KOG1248|consen 732 HCDLIPKLIPEVILSLKEV-----NVKARRNAFALLVFIGAIQS--------------SL-------------------- 772 (1176)
T ss_pred HHHHHHHHHHHHHHhcccc-----cHHHHhhHHHHHHHHHHHHh--------------hh--------------------
Confidence 4444444443 33333222 45667777777777772100 00
Q ss_pred cccccccccCCCCCCCCCCchHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhh----cChhhHHHHHHHHHhhcCCC
Q 000911 359 VDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSC----LTSSLSEEVFSSVLELFSPG 434 (1229)
Q Consensus 359 ~~~~~~~~~~~~~~~ed~dv~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~r----L~~~~a~qVv~~vl~~f~~~ 434 (1229)
++.+...++.|++.|..+-.++....|.++=+-==+++.|.-. ++.+.-.++++.|-..+..+
T Consensus 773 -------------d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~ 839 (1176)
T KOG1248|consen 773 -------------DDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN 839 (1176)
T ss_pred -------------cccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC
Confidence 0111225789999999999999888888776644455555444 44455555555554444332
Q ss_pred CCCCchhhHHHHHHHHHhcCCCCCC-----CccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHH
Q 000911 435 EGDGSWHGGCLALAELARRGLLLPS-----SLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRN 509 (1229)
Q Consensus 435 ~~~~~WHG~cLaLAEL~rrgll~p~-----~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~ 509 (1229)
+=|=.-.|++-+..--.-.|+ .+++++|.+.. -.|---.++|=+.=+.+==|.|.|.++++++
T Consensus 840 ----sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~--------ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 840 ----SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA--------LSHDHKIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred ----CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH--------HHHhhhHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 222233333333332222233 34666666643 2233345789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchhhhh
Q 000911 510 ILEQIAPHLLTVACYDREVNCRRA 533 (1229)
Q Consensus 510 ~~~~la~~Lv~~a~FDrevniRRa 533 (1229)
+++..-..++ .||||.
T Consensus 908 ~~pee~~klL--------~nIRK~ 923 (1176)
T KOG1248|consen 908 FLPEEDMKLL--------TNIRKR 923 (1176)
T ss_pred hCHHHHHHHH--------HHHHHH
Confidence 9998888887 588874
No 52
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.72 E-value=2.4e+02 Score=35.63 Aligned_cols=174 Identities=17% Similarity=0.253 Sum_probs=99.9
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhh-cCCCchhhhhHHHHHhhcCChHhhhhhHHH
Q 000911 689 LDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ-LTDPNPAIRRGSALALGVLPYELLANSWRD 767 (1229)
Q Consensus 689 ~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~-l~~~~~~~r~G~alaLG~lp~~~l~~~~~~ 767 (1229)
-++|++-+...++..+...+=++ ...|.... ...+|+..+.- +.+.|-..||....|||-+-..= ...+-.
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~---alAy~GTg----n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-~~~lv~ 589 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSL---ALAYVGTG----NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-RDLLVG 589 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHH---HHHHhcCC----cchhHhhhheeecccCchHHHHHHHHheeeeEecC-cchhhH
Confidence 34566666677666665554333 22333222 24677777765 56778888888888888641100 011223
Q ss_pred HHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCC
Q 000911 768 VLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRG 847 (1229)
Q Consensus 768 il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RG 847 (1229)
+++.|... -..-.|....-+|+-.|..-| + ..+ -.+++.|..
T Consensus 590 tvelLs~s---------hN~hVR~g~AvaLGiacag~G-----------~---~~a----~diL~~L~~----------- 631 (926)
T COG5116 590 TVELLSES---------HNFHVRAGVAVALGIACAGTG-----------D---KVA----TDILEALMY----------- 631 (926)
T ss_pred HHHHhhhc---------cchhhhhhhHHHhhhhhcCCc-----------c---HHH----HHHHHHHhh-----------
Confidence 34434322 124455555555555453221 1 112 223333332
Q ss_pred cchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 000911 848 DVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAK 927 (1229)
Q Consensus 848 DVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~ 927 (1229)
|--++||.+||-|+.-++ . ++.++ ++|+ +.++...+.|.-.||=..==++=|.
T Consensus 632 D~~dfVRQ~AmIa~~mIl---~----------------------Q~n~~-Lnp~-v~~I~k~f~~vI~~Khe~glaklGA 684 (926)
T COG5116 632 DTNDFVRQSAMIAVGMIL---M----------------------QCNPE-LNPN-VKRIIKKFNRVIVDKHESGLAKLGA 684 (926)
T ss_pred CcHHHHHHHHHHHHHHHH---h----------------------hcCcc-cChh-HHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 445799999999997654 3 33344 3344 7789999999999998877777788
Q ss_pred HHHHHhhc
Q 000911 928 VLRRILYN 935 (1229)
Q Consensus 928 ~l~~ll~~ 935 (1229)
|+.+-+-.
T Consensus 685 ~laqGi~~ 692 (926)
T COG5116 685 VLAQGISE 692 (926)
T ss_pred HHHhhhhh
Confidence 88776544
No 53
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.21 E-value=3.4e+02 Score=37.12 Aligned_cols=356 Identities=15% Similarity=0.127 Sum_probs=196.8
Q ss_pred ccchhhHHHHHhhccc--CccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhhccCCCCCCCccceeeeceeecc
Q 000911 487 VRDAAAYVCWAFGRAY--CHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLS 564 (1229)
Q Consensus 487 VRDAACyv~WAlaRay--~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~VGR~G~~phGI~Iv~~~DyfaV~ 564 (1229)
+=|+=||=+|++-=.| .|-++..-+..+|..|..+-.+-+ -.|=.-..|+|++|+- |.
T Consensus 490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~--elr~~Ic~sL~~Lv~~-n~----------------- 549 (1176)
T KOG1248|consen 490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP--ELRETICNSLRMLVEQ-NK----------------- 549 (1176)
T ss_pred HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch--HhHHHHHHHHHHHHHc-CC-----------------
Confidence 6799999999997765 467888878899998887777776 6788999999999965 21
Q ss_pred cchhhHHHHHHHHhccccChHHHHHHHhhcccchhccCCcC--C-CChhHHHHHHHHHHHHHHHHhcccccCChhHHHHH
Q 000911 565 SRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTL--S-TDLCTRHGATLAAGEVVLALCKYDYALPADKQKIV 641 (1229)
Q Consensus 565 ~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWll~~~~--s-~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i 641 (1229)
.-.+.+...+-...|..+++.-|.. - ...+. . ..+..|---++.+-.. -++.. +.+....+
T Consensus 550 ----~~~~a~e~~e~~s~~AknfL~~lfn-----~-ytq~~~~~~~~l~~~~~~L~~i~~~--~~~~t----~~dv~~~l 613 (1176)
T KOG1248|consen 550 ----PSSDAAENKEVLSNDAKNFLPRLFN-----V-YTQTVAAGRKILASRSTVLEIIRVD--YFTVT----PTDVVGSL 613 (1176)
T ss_pred ----CcchHHHHHHHHhhhhhHHHHHHHH-----H-hcCCCccccccHHHHHHHHHHHHHH--Hhhcc----cHHHHHHH
Confidence 1123334444445666666655553 1 11110 1 2333333333333210 11111 22222222
Q ss_pred H----hhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 000911 642 A----GIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQT 717 (1229)
Q Consensus 642 ~----~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~ 717 (1229)
. .......+. -...++-++-.++-+++.+ .+++.+.....+..+-.++.+..+|..|.+-+..++..
T Consensus 614 ~~s~~e~as~~~~s------~~~~~~~slLdl~~~~a~~---~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~ 684 (1176)
T KOG1248|consen 614 KDSAGELASDLDES------VASFKTLSLLDLLIALAPV---QTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS 684 (1176)
T ss_pred HHHHHhHhccchhh------hhhHHHHHHHHHHHhhhcc---ccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC
Confidence 1 111111100 0112444444555444432 12333444445555555777899999998888777764
Q ss_pred hhccC-CcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHH
Q 000911 718 YMVAA-DSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRG 796 (1229)
Q Consensus 718 y~~~~-~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~s 796 (1229)
-.+.. ..+..+.+.+...+..++....++.++-.+|-.+....-..+..-+...+..... .-+ ..+..+|++|-++
T Consensus 685 ~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL-~~K--e~n~~aR~~Af~l 761 (1176)
T KOG1248|consen 685 PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVIL-SLK--EVNVKARRNAFAL 761 (1176)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-hcc--cccHHHHhhHHHH
Confidence 11100 0011144445555555666667788887777776544332222111111111111 112 3468899999999
Q ss_pred HHHHH--hhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCCC
Q 000911 797 LVSVC--ETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFV 874 (1229)
Q Consensus 797 L~~i~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~~ 874 (1229)
|..++ +..-.. |+ ..-..+++.++..+..| =||.--|..|-. |-.+..++.
T Consensus 762 L~~i~~i~~~~d~--------g~---e~~~~~lnefl~~Isag----------l~gd~~~~~as~-Ivai~~il~----- 814 (1176)
T KOG1248|consen 762 LVFIGAIQSSLDD--------GN---EPASAILNEFLSIISAG----------LVGDSTRVVASD-IVAITHILQ----- 814 (1176)
T ss_pred HHHHHHHHhhhcc--------cc---cchHHHHHHHHHHHHhh----------hcccHHHHHHHH-HHHHHHHHH-----
Confidence 99887 322111 11 11235677888888776 567777776665 444443443
Q ss_pred CCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 000911 875 PSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYN 935 (1229)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~ 935 (1229)
.....++...+.+++.-+.---+++=-.+|..|-..+..+.+.
T Consensus 815 ------------------e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 815 ------------------EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred ------------------HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 2345667777777777766666777778888888877776655
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.02 E-value=1.5e+02 Score=37.09 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=82.3
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCchh-HHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHhhccCCcch-----hhhh
Q 000911 658 GGEIMRSAVSRFIECISLSFVSLPEK-TKRSLLDTLNENLR-HPNSQIQNAAVKALKPFVQTYMVAADSGV-----VGGI 730 (1229)
Q Consensus 658 ggel~r~A~c~lI~~ls~s~~pl~~~-~~~~~~~~l~~~L~-~~~~~i~~aA~~Al~~l~~~y~~~~~~~~-----~~~i 730 (1229)
.++....|...|=..+|...-|-..+ +.......+-++|. +.++.+|..|+-|+..+..- ..+. ...-
T Consensus 79 ~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsg-----tse~T~~vv~aga 153 (514)
T KOG0166|consen 79 DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASG-----TSEQTKVVVDAGA 153 (514)
T ss_pred CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcC-----chhhccccccCCc
Confidence 34446666666666666544343333 33444555666775 66699999998888655431 1111 1566
Q ss_pred HHHHHhhcCCCchhhhhHHHHHhhcCChHh--hhhhH--HHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHh
Q 000911 731 SLKYMEQLTDPNPAIRRGSALALGVLPYEL--LANSW--RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 802 (1229)
Q Consensus 731 i~~~~~~l~~~~~~~r~G~alaLG~lp~~~--l~~~~--~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~ 802 (1229)
+.-++.-+.+++...+.=.+.|||-+...- ++... -.++.-|....... .. .-..|++..+|+.+|.
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~----~~-~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS----DK-LSMLRNATWTLSNLCR 224 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc----cc-hHHHHHHHHHHHHHHc
Confidence 777888889999999999999999985332 11110 01222333332111 11 5689999999999997
No 55
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=71.59 E-value=2.1e+02 Score=35.46 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHccCCh---HHHHHHHHHHHHhhcCCchhHHH---------------------HHHHHHHHhcCCC
Q 000911 1071 IFCAGVLDSLAVELKATKDF---SKLYAGIAILGYIASVSDPISTR---------------------AFSYLLNFLGHRF 1126 (1229)
Q Consensus 1071 ~~~~~l~~l~~~e~~~sk~v---~kL~~~i~v~~~l~~~~~~~~~~---------------------a~~~L~~lL~H~~ 1126 (1229)
.+...|+..+.+.+.+..+. ..+...+.++..+++....+|+- -..+|+.+|.|+.
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~ 321 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD 321 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC
Confidence 56788888888877776533 35666666666666654333332 3567899999999
Q ss_pred hhhhHHHHHHHHHH
Q 000911 1127 PKIRKASAEQVYLV 1140 (1229)
Q Consensus 1127 PkVR~~~Ae~lY~~ 1140 (1229)
|.+|..+||-||..
T Consensus 322 ~~~k~~vaellf~L 335 (446)
T PF10165_consen 322 PQLKDAVAELLFVL 335 (446)
T ss_pred chHHHHHHHHHHHH
Confidence 99999999999985
No 56
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=71.17 E-value=1.8e+02 Score=37.84 Aligned_cols=182 Identities=14% Similarity=0.127 Sum_probs=104.9
Q ss_pred CCcCCCChhHHHHHHHHHHHHHHHHhcccccCChhHHHHHHhhhhhhhhhh-cccC-CchhhHHHHHHHHHHHHhhcCCC
Q 000911 602 PFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKAR-LYRG-KGGEIMRSAVSRFIECISLSFVS 679 (1229)
Q Consensus 602 ~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~-l~rg-~ggel~r~A~c~lI~~ls~s~~p 679 (1229)
+...+.|-.+|.-.-=|.|-++.+|. +..+.-.+.++++.+ -+.+ ..|-=+.+-+|-|+.|-- +|
T Consensus 483 pDidn~deYVRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsv---lp 549 (1172)
T KOG0213|consen 483 PDIDNKDEYVRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSV---LP 549 (1172)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchh---hh
Confidence 34445566777766666777777763 112222223333221 2222 123345555666654321 22
Q ss_pred CchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChH
Q 000911 680 LPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYE 759 (1229)
Q Consensus 680 l~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~ 759 (1229)
.+....++|+.+|.....-|+.-++-|+++++..-..-. -+.-+.+++-.-++++...--.-..+..|+|.+=+.
T Consensus 550 ----hl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~hrgk~laafLkAigylipl 624 (1172)
T KOG0213|consen 550 ----HLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPL 624 (1172)
T ss_pred ----hhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHccChHHHHHHHHHhhcccc
Confidence 235788999999999999999999999999988744321 112255655555555432222223345566665322
Q ss_pred hh---hhh-HHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccc
Q 000911 760 LL---ANS-WRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQS 807 (1229)
Q Consensus 760 ~l---~~~-~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~ 807 (1229)
+- ..+ -.+++..|++. . ...|-|..+-.++-+.+.|.|.|+.
T Consensus 625 md~eya~yyTrevmlil~rE-----f-~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 625 MDAEYASYYTREVMLILIRE-----F-GSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred ccHHHHHHhHHHHHHHHHHh-----h-CCChHHHHHHHHHHHHHHhcccCCC
Confidence 21 122 24455445443 2 5567899999999999999998876
No 57
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=71.04 E-value=52 Score=38.12 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=70.0
Q ss_pred HHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCC
Q 000911 767 DVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNR 846 (1229)
Q Consensus 767 ~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~R 846 (1229)
.+++.|+.-.. ...+.+.|..|++||+-.|. +..+...+.+..+..+++.
T Consensus 26 ~ll~~lI~P~v-----~~~~~~vR~~al~cLGl~~L-------------------ld~~~a~~~l~l~~~~~~~------ 75 (298)
T PF12719_consen 26 SLLDSLILPAV-----QSSDPAVRELALKCLGLCCL-------------------LDKELAKEHLPLFLQALQK------ 75 (298)
T ss_pred HHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHH-------------------hChHHHHHHHHHHHHHHHh------
Confidence 45555553321 34468999999999998653 1123344445555555522
Q ss_pred CcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000911 847 GDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAA 926 (1229)
Q Consensus 847 GDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~ 926 (1229)
| ..-||..|++++-++..... .+. .... .....-.+...+.+++.+.+... -+.+|..|+
T Consensus 76 -~-~~~v~~~al~~l~Dll~~~g-~~~---------~~~~-----~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~ 135 (298)
T PF12719_consen 76 -D-DEEVKITALKALFDLLLTHG-IDI---------FDSE-----SDNDESVDSKSLLKILTKFLDSE---NPELQAIAV 135 (298)
T ss_pred -C-CHHHHHHHHHHHHHHHHHcC-chh---------ccch-----hccCccchHhHHHHHHHHHHhcC---CHHHHHHHH
Confidence 3 67799999999988753221 000 0000 00001122334555666665555 457999999
Q ss_pred HHHHHHhhcc
Q 000911 927 KVLRRILYNK 936 (1229)
Q Consensus 927 ~~l~~ll~~~ 936 (1229)
+.|++++.+.
T Consensus 136 EGl~KLlL~~ 145 (298)
T PF12719_consen 136 EGLCKLLLSG 145 (298)
T ss_pred HHHHHHHhcC
Confidence 9999998775
No 58
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=70.98 E-value=78 Score=38.16 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhc-CCc-----hhHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Q 000911 1091 SKLYAGIAILGYIAS-VSD-----PISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLL 1142 (1229)
Q Consensus 1091 ~kL~~~i~v~~~l~~-~~~-----~~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll 1142 (1229)
.|+..+..++..+++ -+| .-.-++++-|...|.+|-|.+|++.-+-+|..|.
T Consensus 212 ~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 212 ERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 466666666655554 222 1122789999999999999999999999999764
No 59
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=70.48 E-value=2.9e+02 Score=34.68 Aligned_cols=171 Identities=19% Similarity=0.245 Sum_probs=100.7
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcc----hhhhhHHH
Q 000911 658 GGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG----VVGGISLK 733 (1229)
Q Consensus 658 ggel~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~----~~~~ii~~ 733 (1229)
+.|.+ ..+|..|..|-... + ..+....+...+..+|.|+++.|+.-+..++...... .... ...+++..
T Consensus 51 ~~e~v-~~~~~iL~~~l~~~-~-~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~----~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 51 NREQV-ELICDILKRLLSAL-S-PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH----SEGAAQLLVDNELLPL 123 (503)
T ss_pred ChHHH-HHHHHHHHHHHhcc-C-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC----CHHHHHHhcCccHHHH
Confidence 45555 67788888766432 2 1234678889999999999999999998887655431 1110 11577777
Q ss_pred HHhhcCCCchhhhhHHHHHhhcCChHhhhhhHHHH-----HHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhcccc
Q 000911 734 YMEQLTDPNPAIRRGSALALGVLPYELLANSWRDV-----LLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQ 808 (1229)
Q Consensus 734 ~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~i-----l~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~ 808 (1229)
.+..+.+++.....-.+.+|..+...- ...+.+ +..|..... ..+...|......+..++..-
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~------~~~~~vR~Rv~el~v~i~~~S---- 191 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMS------QSSDIVRCRVYELLVEIASHS---- 191 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHh------ccCHHHHHHHHHHHHHHHhcC----
Confidence 788888887777777777776664321 112222 233333211 113567877777777765421
Q ss_pred ccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHH
Q 000911 809 ENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~ 865 (1229)
++ ....-....+++.+++.|++ -| -.||..+++-+..+.
T Consensus 192 -~~---------~~~~~~~sgll~~ll~eL~~------dD--iLvqlnalell~~La 230 (503)
T PF10508_consen 192 -PE---------AAEAVVNSGLLDLLLKELDS------DD--ILVQLNALELLSELA 230 (503)
T ss_pred -HH---------HHHHHHhccHHHHHHHHhcC------cc--HHHHHHHHHHHHHHH
Confidence 11 11111111255556555544 23 378988888887763
No 60
>PTZ00429 beta-adaptin; Provisional
Probab=70.05 E-value=3.6e+02 Score=35.66 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhH--HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcC
Q 000911 378 VPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLS--EEVFSSVLELFSPGEGDGSWHGGCLALAELARRG 454 (1229)
Q Consensus 378 v~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a--~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrg 454 (1229)
+|+.+|.++..+..+|.|++-.||=+||=++.||-..-| ++. ...++.+.++++. .+...-=.++.+|-|+...+
T Consensus 134 ~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 134 VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhC
Confidence 468899999999999999999999999999999976544 432 2355666665542 23333344566677887654
No 61
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=69.11 E-value=3.3e+02 Score=34.75 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=77.5
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHh
Q 000911 657 KGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYME 736 (1229)
Q Consensus 657 ~ggel~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~ 736 (1229)
+|+.-+..=++.||..... .+|-..+ ...-..+|.| ...+..||..|..++..+|.. ..+-..++++-...
T Consensus 33 kg~~k~K~Laaq~I~kffk-~FP~l~~--~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~-----~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFK-HFPDLQE--EAINAQLDLC-EDEDVQIRKQAIKGLPQLCKD-----NPEHVSKVADVLVQ 103 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHC-C-GGGHH--HHHHHHHHHH-T-SSHHHHHHHHHHGGGG--T-------T-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh-hChhhHH--HHHHHHHHHH-hcccHHHHHHHHHhHHHHHHh-----HHHHHhHHHHHHHH
Confidence 3566677778889987663 4554332 2333344444 677899999999999888763 33333455555555
Q ss_pred hcCCCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCC
Q 000911 737 QLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSG 816 (1229)
Q Consensus 737 ~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~ 816 (1229)
.|++..+...--.-.+|-.+- ...-+..+.+|+..+... ...|-..|-.+++-|..-+.+++..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll----~~d~k~tL~~lf~~i~~~---~~~de~~Re~~lkFl~~kl~~l~~~--------- 167 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLL----KQDPKGTLTGLFSQIESS---KSGDEQVRERALKFLREKLKPLKPE--------- 167 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHH------HS-HHHHHHHHHHHHHHGGGS-TT---------
T ss_pred HHhcccHHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhc---ccCchHHHHHHHHHHHHHHhhCcHH---------
Confidence 555433322221112221211 111122333444433211 1235668999988887655544322
Q ss_pred chhhhHh--hhhHHHHHHHHHHhccccC
Q 000911 817 EDEISLF--HLIKNEVMTSLFKALDDYS 842 (1229)
Q Consensus 817 ~~~~~~~--~~~~~~v~~~Ll~~L~DYT 842 (1229)
.+. .+..+-|++.+-+.|.|-|
T Consensus 168 ----~~~p~~E~e~~i~~~ikkvL~DVT 191 (556)
T PF05918_consen 168 ----LLTPQKEMEEFIVDEIKKVLQDVT 191 (556)
T ss_dssp ----TS---HHHHHHHHHHHHHHCTT--
T ss_pred ----HhhchHHHHHHHHHHHHHHHHhcc
Confidence 111 3455667777788898866
No 62
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=69.10 E-value=55 Score=41.67 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=55.6
Q ss_pred CccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHH
Q 000911 784 DRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEI 863 (1229)
Q Consensus 784 ~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~ 863 (1229)
..|.+.+.-+++||+.+ |. ..++..|...+ .+.- ++-..+|.+||.|+..
T Consensus 501 ~~~~~~~~~~LkaLgN~----g~---------------------~~~i~~l~~~i----~~~~-~~~~~~R~~Ai~Alr~ 550 (618)
T PF01347_consen 501 RGDEEEKIVYLKALGNL----GH---------------------PESIPVLLPYI----EGKE-EVPHFIRVAAIQALRR 550 (618)
T ss_dssp TT-HHHHHHHHHHHHHH----T----------------------GGGHHHHHTTS----TTSS--S-HHHHHHHHHTTTT
T ss_pred ccCHHHHHHHHHHhhcc----CC---------------------chhhHHHHhHh----hhcc-ccchHHHHHHHHHHHH
Confidence 34678899999999874 21 11233333333 2222 7888999999999864
Q ss_pred HHHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000911 864 CTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRR 931 (1229)
Q Consensus 864 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ 931 (1229)
+. ...++.+.+++-.|.++-.|.-+ +|..|..+|.+
T Consensus 551 ~~-------------------------------~~~~~~v~~~l~~I~~n~~e~~E-vRiaA~~~lm~ 586 (618)
T PF01347_consen 551 LA-------------------------------KHCPEKVREILLPIFMNTTEDPE-VRIAAYLILMR 586 (618)
T ss_dssp GG-------------------------------GT-HHHHHHHHHHHHH-TTS-HH-HHHHHHHHHHH
T ss_pred Hh-------------------------------hcCcHHHHHHHHHHhcCCCCChh-HHHHHHHHHHh
Confidence 31 12477899999999999999999 99999765553
No 63
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.50 E-value=2.1e+02 Score=37.12 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcC-
Q 000911 661 IMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT- 739 (1229)
Q Consensus 661 l~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~- 739 (1229)
-+|--+|.+|..++-.....++++......-+..-+...++.|+..|+-|+ .||+..++...-.++..|...++
T Consensus 100 ~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aL-----srlQ~d~~dee~~v~n~l~~liqn 174 (892)
T KOG2025|consen 100 KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLAL-----SRLQGDPKDEECPVVNLLKDLIQN 174 (892)
T ss_pred hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHH-----HHHhcCCCCCcccHHHHHHHHHhc
Confidence 488899999999987656666777777777777778899999998887766 35665555544678888888887
Q ss_pred CCchhhhhHHHHHhh
Q 000911 740 DPNPAIRRGSALALG 754 (1229)
Q Consensus 740 ~~~~~~r~G~alaLG 754 (1229)
+++.-.||..-+.+.
T Consensus 175 DpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 175 DPSDEVRRAALSNIS 189 (892)
T ss_pred CCcHHHHHHHHHhhc
Confidence 899999995554443
No 64
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.27 E-value=2.8e+02 Score=35.80 Aligned_cols=123 Identities=15% Similarity=0.046 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCC
Q 000911 662 MRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDP 741 (1229)
Q Consensus 662 ~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~ 741 (1229)
+|.|+-.=.-+++.+...+. .+-+++|-+.+....+.|+..|..|+..+... ....++.+..+++-|.+.
T Consensus 389 VR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~ 458 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR 458 (823)
T ss_pred HHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc
Confidence 55555544455666554333 34455566666677889999999999888765 122367888889889888
Q ss_pred chhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHh
Q 000911 742 NPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCE 802 (1229)
Q Consensus 742 ~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~ 802 (1229)
++.+|.+.=..|+..-..-++ -+...+..|.++...-++ -|-....|+.+|-+
T Consensus 459 s~dvRe~l~elL~~~~~~d~~-~i~m~v~~lL~~L~kyPq-------Drd~i~~cm~~iGq 511 (823)
T KOG2259|consen 459 SVDVREALRELLKNARVSDLE-CIDMCVAHLLKNLGKYPQ-------DRDEILRCMGRIGQ 511 (823)
T ss_pred CHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHhhhCCC-------CcHHHHHHHHHHhc
Confidence 899998877777665433222 233444555544321111 14455667776544
No 65
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=66.22 E-value=1.3e+02 Score=41.01 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=35.6
Q ss_pred ChhhhHHHHHHHHHHHHhcCCCcchhhHHHHHhhhhhcCCCCchhHhHHHHHHHHHHhCCCC
Q 000911 1126 FPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGETCWEGDMNVVKHQRLELYNLAGVGV 1187 (1229)
Q Consensus 1126 ~PkVR~~~Ae~lY~~Ll~~~d~~~~e~~d~~~~~L~~tdW~~~~~~~r~~r~~l~~l~gv~~ 1187 (1229)
+|.||+.+.+---+. ...-....+++...|-.-+|+--+.-....-.++|...-+.+
T Consensus 647 ~p~I~plm~tik~e~-----n~~~q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p 703 (1549)
T KOG0392|consen 647 NPIIRPLMETIKKEE-----NAMLQPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDP 703 (1549)
T ss_pred hhHHHHHHHHHHhhh-----HhHhHHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCc
Confidence 677777665422221 001112236788889999999876666777778888776554
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=64.91 E-value=8.8 Score=32.54 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 000911 662 MRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKP 713 (1229)
Q Consensus 662 ~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~ 713 (1229)
+|.++|..|..++...-+............|...|.++++.|+.+|+.|+..
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5777888776655332222222445666777788899999999999999864
No 67
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=62.84 E-value=1.7e+02 Score=37.04 Aligned_cols=144 Identities=19% Similarity=0.095 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcc---hhhhhHHHHHhhcC----CCchhhhhHHHHHhh
Q 000911 682 EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSG---VVGGISLKYMEQLT----DPNPAIRRGSALALG 754 (1229)
Q Consensus 682 ~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~---~~~~ii~~~~~~l~----~~~~~~r~G~alaLG 754 (1229)
.+.++....++..--..+...+...|.-|+..+...|+...+.. ..+++++.+.+.++ ..+...+.-+..|||
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 34555666666544455677889999999999998776543321 11344444444342 334455677899999
Q ss_pred cCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHH
Q 000911 755 VLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSL 834 (1229)
Q Consensus 755 ~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L 834 (1229)
.+--...-..+..++ + .. .......|+.||.||.++... ....+.+.|
T Consensus 472 N~g~~~~i~~l~~~l---~------~~-~~~~~~iR~~Av~Alr~~a~~----------------------~p~~v~~~l 519 (574)
T smart00638 472 NAGHPSSIKVLEPYL---E------GA-EPLSTFIRLAAILALRNLAKR----------------------DPRKVQEVL 519 (574)
T ss_pred ccCChhHHHHHHHhc---C------CC-CCCCHHHHHHHHHHHHHHHHh----------------------CchHHHHHH
Confidence 874221111111111 1 11 334578999999999975431 123445555
Q ss_pred HHhccccCCCCCCcchHHHHHHHHhHHHH
Q 000911 835 FKALDDYSVDNRGDVGSWVREAAVDGLEI 863 (1229)
Q Consensus 835 l~~L~DYT~D~RGDVGSwVReaam~~l~~ 863 (1229)
+.-+.|-+-| +-||.||.-.|..
T Consensus 520 ~~i~~n~~e~------~EvRiaA~~~lm~ 542 (574)
T smart00638 520 LPIYLNRAEP------PEVRMAAVLVLME 542 (574)
T ss_pred HHHHcCCCCC------hHHHHHHHHHHHh
Confidence 5555544433 4499999977753
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=60.95 E-value=34 Score=32.54 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhH-HHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHH
Q 000911 786 DTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIK-NEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEIC 864 (1229)
Q Consensus 786 d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~ 864 (1229)
+.+.|.+++.+|..++... + ....... ..++..++..|+|. | .-||..|+.+|..+
T Consensus 20 ~~~~~~~a~~~l~~l~~~~-----~----------~~~~~~~~~~~i~~l~~~l~~~------~--~~v~~~a~~~L~~l 76 (120)
T cd00020 20 DENVQREAAWALSNLSAGN-----N----------DNIQAVVEAGGLPALVQLLKSE------D--EEVVKAALWALRNL 76 (120)
T ss_pred CHHHHHHHHHHHHHHhcCC-----H----------HHHHHHHHCCChHHHHHHHhCC------C--HHHHHHHHHHHHHH
Confidence 3789999999999987531 0 1112222 26778888888873 1 68999999999876
Q ss_pred HHHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000911 865 TYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 932 (1229)
Q Consensus 865 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~l 932 (1229)
. . ..+.......-..++..+++...++=-++|..|..+|..+
T Consensus 77 ~---~-----------------------~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 77 A---A-----------------------GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred c---c-----------------------CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4 1 1111010111123566666666665557888888888765
No 69
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=60.77 E-value=57 Score=42.94 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhccCCCC---chhHHHhhhhhhhhHhhcChh----hHHHHHHHHHhhcCC
Q 000911 379 PDILEEIIEILLSGLRDTD---TVVRWSAAKGIGRITSCLTSS----LSEEVFSSVLELFSP 433 (1229)
Q Consensus 379 ~e~vE~iI~~LL~~L~d~d---T~VRwsaAKglgrI~~rL~~~----~a~qVv~~vl~~f~~ 433 (1229)
++-+..++-.+|.-=+|.| ++||-.|=++++-++.|+|.. +.++||.+++..++.
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD 1006 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD 1006 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc
Confidence 5778899999998777777 899999999999999999974 789999999998864
No 70
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=60.30 E-value=4.1e+02 Score=32.86 Aligned_cols=74 Identities=23% Similarity=0.239 Sum_probs=52.2
Q ss_pred CchhHHHhhhhhhhhHhhcChhhHHHHHHH-HHhhcCCCCCCCch--hhHHHHHHHHHhcCCCCCCC--ccchHHHHHHh
Q 000911 397 DTVVRWSAAKGIGRITSCLTSSLSEEVFSS-VLELFSPGEGDGSW--HGGCLALAELARRGLLLPSS--LPKVVPVIVKA 471 (1229)
Q Consensus 397 dT~VRwsaAKglgrI~~rL~~~~a~qVv~~-vl~~f~~~~~~~~W--HG~cLaLAEL~rrgll~p~~--L~~vv~~v~~a 471 (1229)
-+.-|-++||+||.++.++|.+...++.+. ++..|+ +..+. +.+++.+.|.+..--..... .+.+.+.+...
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~---S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLN---SPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 356899999999999999999888888886 555665 33333 57999999999875422111 23445666555
Q ss_pred he
Q 000911 472 LH 473 (1229)
Q Consensus 472 L~ 473 (1229)
|.
T Consensus 177 L~ 178 (441)
T PF12054_consen 177 LE 178 (441)
T ss_pred Hc
Confidence 55
No 71
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=57.14 E-value=1.9e+02 Score=38.22 Aligned_cols=230 Identities=21% Similarity=0.191 Sum_probs=125.8
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhc
Q 000911 659 GEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQL 738 (1229)
Q Consensus 659 gel~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l 738 (1229)
.+-+|.|.+..|-.++.. +| ++.++...+.....+++.....|+.....-+..+ -...+..+.+.+.+..+..+
T Consensus 411 ~~~vr~a~a~~~~~~~p~-~~-k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~----~~v~~v~g~~~~s~slLp~i 484 (759)
T KOG0211|consen 411 ALHVRSALASVITGLSPI-LP-KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL----EEVNDVIGISTVSNSLLPAI 484 (759)
T ss_pred cchHHHHHhccccccCcc-CC-cCcCccccChhhhhhcchhhHHHHHhhHHHHHHH----HhccCcccchhhhhhhhhhh
Confidence 556888888887554321 12 2233344445555556666666665555322211 11111122222222333222
Q ss_pred ----CCCchhhhhHHHHHhhcCChHhhh---hhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccc
Q 000911 739 ----TDPNPAIRRGSALALGVLPYELLA---NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENS 811 (1229)
Q Consensus 739 ----~~~~~~~r~G~alaLG~lp~~~l~---~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~ 811 (1229)
.+.+-..|. ..+=.+|--..+ ..+.+.+..||.. +. .+...+.|..|.+.+..++.+.| ..
T Consensus 485 ~el~~d~~wRvr~---ail~~ip~la~q~~~~~~~~~~~~l~~~----~l-~d~v~~Ir~~aa~~l~~l~~~~G-~~--- 552 (759)
T KOG0211|consen 485 VELAEDLLWRVRL---AILEYIPQLALQLGVEFFDEKLAELLRT----WL-PDHVYSIREAAARNLPALVETFG-SE--- 552 (759)
T ss_pred hhhccchhHHHHH---HHHHHHHHHHHhhhhHHhhHHHHHHHHh----hh-hhhHHHHHHHHHHHhHHHHHHhC-cc---
Confidence 122111121 122223322221 1122333444443 22 45568999999999999999988 21
Q ss_pred cccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCc
Q 000911 812 LIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNV 891 (1229)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 891 (1229)
. .....+...|...++| +-|+|.+...++..+..++.
T Consensus 553 ----------w--~~~~~i~k~L~~~~q~---------~y~~R~t~l~si~~la~v~g---------------------- 589 (759)
T KOG0211|consen 553 ----------W--ARLEEIPKLLAMDLQD---------NYLVRMTTLFSIHELAEVLG---------------------- 589 (759)
T ss_pred ----------h--hHHHhhHHHHHHhcCc---------ccchhhHHHHHHHHHHHHhc----------------------
Confidence 0 2233455555555555 88999999999987654443
Q ss_pred cccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCCCCCcchH----HHhhhcCCCcccCc
Q 000911 892 TAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHRE----KLEEIVPNEADLNW 960 (1229)
Q Consensus 892 ~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~pip~~~----~L~~i~~~~~~~~w 960 (1229)
++-....++.=+.+....-.-.||..|.+.|.+++..-. .+-++ .+.+-+.++.+.+|
T Consensus 590 -------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~----~~~~~~~v~pll~~L~~d~~~dv 651 (759)
T KOG0211|consen 590 -------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD----ESVRDEEVLPLLETLSSDQELDV 651 (759)
T ss_pred -------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc----hHHHHHHHHHHHHHhccCcccch
Confidence 244566777777888888888999999999999875532 12221 24444555667777
No 72
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=57.12 E-value=3.6e+02 Score=31.20 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=73.4
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhhH
Q 000911 686 RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSW 765 (1229)
Q Consensus 686 ~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~ 765 (1229)
.-+..++.-++++++..||+.|.+++.-++... . ++..+++
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-----~----~~a~~~l------------------------------ 66 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLD-----K----ELAKEHL------------------------------ 66 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-----h----HHHHHHH------------------------------
Confidence 556778888999999999999999997655431 0 1111111
Q ss_pred HHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCC
Q 000911 766 RDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDN 845 (1229)
Q Consensus 766 ~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~ 845 (1229)
.-++..+ . . .+.+-|.-|+++|..++.+.|...-.... .++ .......+.+.+.+.+++...+
T Consensus 67 ~l~~~~~-~--------~-~~~~v~~~al~~l~Dll~~~g~~~~~~~~-~~~-----~~~~~~~l~~~l~~~l~~~~~~- 129 (298)
T PF12719_consen 67 PLFLQAL-Q--------K-DDEEVKITALKALFDLLLTHGIDIFDSES-DND-----ESVDSKSLLKILTKFLDSENPE- 129 (298)
T ss_pred HHHHHHH-H--------h-CCHHHHHHHHHHHHHHHHHcCchhccchh-ccC-----ccchHhHHHHHHHHHHhcCCHH-
Confidence 1111111 1 1 15788889999999998888765211110 000 1133466788888888887111
Q ss_pred CCcchHHHHHHHHhHHHHHH
Q 000911 846 RGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 846 RGDVGSwVReaam~~l~~~~ 865 (1229)
+|..|.+|+..+.
T Consensus 130 -------~~~~a~EGl~KLl 142 (298)
T PF12719_consen 130 -------LQAIAVEGLCKLL 142 (298)
T ss_pred -------HHHHHHHHHHHHH
Confidence 9999999998864
No 73
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.17 E-value=1.1e+03 Score=36.62 Aligned_cols=158 Identities=21% Similarity=0.114 Sum_probs=94.6
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCc-c---hh---hhhHHHHHhhcCCCchhhhhHHHHHhhcCCh
Q 000911 686 RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADS-G---VV---GGISLKYMEQLTDPNPAIRRGSALALGVLPY 758 (1229)
Q Consensus 686 ~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~-~---~~---~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~ 758 (1229)
....+.|-+|+++.+.++..++..++...+..-+..... + .. ..++.++++...++.-..+.|...++|++-.
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 567888889999999999999999998876654322111 1 11 6677777776666666788999999999855
Q ss_pred Hhh----hhhHHHHHHHHhhhcccCCC--CCCccHHHHHHHHHHHHHHHhh-hccccccccccCCchhhhHhhhhHHHHH
Q 000911 759 ELL----ANSWRDVLLKLCSCCLIEEN--PEDRDTEARVNAVRGLVSVCET-LTQSQENSLIHSGEDEISLFHLIKNEVM 831 (1229)
Q Consensus 759 ~~l----~~~~~~il~~L~~~~~~~~~--~~~~d~E~R~~av~sL~~i~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 831 (1229)
.+. ......+++++....+..+. +...-.+++. .+.-+-++|.+ ++.. .........++
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~-~l~~ll~~~~~~~~~~-------------~~~~~~~~~~~ 1128 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKD-ILMDILRVIFIDELAE-------------EERAKSAMNVF 1128 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHH-HHHHHHHHHHHHhhhh-------------HHHHHHHHHHH
Confidence 443 23334556665544433222 1222233333 33334444432 2111 11123445555
Q ss_pred HHHHHhccccCCCCCCcchHHHHHHHHhHHHHHH
Q 000911 832 TSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 832 ~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~ 865 (1229)
..+...|-+=++ -||+.+++.|..+.
T Consensus 1129 ~~lv~eL~npN~--------~VR~~~~~~L~~i~ 1154 (3550)
T KOG0889|consen 1129 SPLVLELFNPNS--------DVREFSQKLLRLIS 1154 (3550)
T ss_pred HHHHHHHcCCch--------HHHHHHHHHHHHHH
Confidence 666666554443 79999999998764
No 74
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=52.04 E-value=28 Score=26.36 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=21.2
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHH
Q 000911 691 TLNENLRHPNSQIQNAAVKALKPFVQ 716 (1229)
Q Consensus 691 ~l~~~L~~~~~~i~~aA~~Al~~l~~ 716 (1229)
.+-..+.+++++||.+|+.++..+++
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45566799999999999999998875
No 75
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.89 E-value=1.3e+02 Score=36.11 Aligned_cols=143 Identities=22% Similarity=0.234 Sum_probs=74.4
Q ss_pred cccCCchhhHHHHHHHHHHHHhhcCCCCchhHH--HHHHHHHHhhc-CCCchHHHHHHHHHHHHHHHHhhccCCcchhhh
Q 000911 653 LYRGKGGEIMRSAVSRFIECISLSFVSLPEKTK--RSLLDTLNENL-RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGG 729 (1229)
Q Consensus 653 l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~--~~~~~~l~~~L-~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ 729 (1229)
+.+..-|.++.+.+. .|.++|.. |+.+-.+ ..++.-+-.-| ...+++||..|++.+.-|...|-..-.......
T Consensus 300 Llqs~~~plilasVa-CIrnisih--plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg 376 (550)
T KOG4224|consen 300 LLQSPMGPLILASVA-CIRNISIH--PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG 376 (550)
T ss_pred HHhCcchhHHHHHHH-HHhhcccc--cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC
Confidence 344444444444333 25555543 4443311 23333333334 355677999999999988876533211111145
Q ss_pred hHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhhHHH-HHH-HHhhhcccCCCCCCccHHHHHHHHHHHHHHHhh
Q 000911 730 ISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRD-VLL-KLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 803 (1229)
Q Consensus 730 ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~-il~-~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t 803 (1229)
-|++..+.+.+..+..+.-...++..+.+ ....+. .++ ++|. ..+++. .....|.|-||-.+|+.++..
T Consensus 377 Ai~kl~eL~lD~pvsvqseisac~a~Lal---~d~~k~~lld~gi~~-iLIp~t-~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 377 AIPKLIELLLDGPVSVQSEISACIAQLAL---NDNDKEALLDSGIIP-ILIPWT-GSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred chHHHHHHHhcCChhHHHHHHHHHHHHHh---ccccHHHHhhcCCcc-eeeccc-CccchhhcccHHHHHHhhhhh
Confidence 66777777666555555544444433321 111111 111 1111 234444 455689999999999987653
No 76
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=50.05 E-value=14 Score=40.09 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=83.7
Q ss_pred ccchhhHHHHHhhcccCccchHHHHHHHHH-----------HHHHHHhcCCCchhhhhHHHHHHHhhccCCCCCCCccce
Q 000911 487 VRDAAAYVCWAFGRAYCHTDMRNILEQIAP-----------HLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIV 555 (1229)
Q Consensus 487 VRDAACyv~WAlaRay~~~~l~~~~~~la~-----------~Lv~~a~FDrevniRRaAsAAfQE~VGR~G~~phGI~Iv 555 (1229)
||=+|.+.+=+++|.-++..+-.|-..+++ .|+...++|++.-||=||.+++..++=..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs---------- 71 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS---------- 71 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc----------
Confidence 677888888888888777777666655543 57999999999999999999999886332
Q ss_pred eeeceeeccc----chhhHHHHHHHHhcc-------------ccChHHHHHHHhh-----------cccchh--------
Q 000911 556 NTADYFSLSS----RVYSYLHVAVFIAQY-------------EGYLYPFVDELLY-----------NKICHW-------- 599 (1229)
Q Consensus 556 ~~~DyfaV~~----r~~ayl~va~~vA~~-------------~~Y~~~li~hLl~-----------~Kl~HW-------- 599 (1229)
-.|++.+. ++.+|...+..+|.- .|+..+.+-++++ .++.-=
T Consensus 72 --k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~ 149 (182)
T PF13251_consen 72 --KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQ 149 (182)
T ss_pred --HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHH
Confidence 34443333 556888888888742 1333333333332 000000
Q ss_pred ccCCcCCCChhHHHHHHHHHHHHHHH
Q 000911 600 LTPFTLSTDLCTRHGATLAAGEVVLA 625 (1229)
Q Consensus 600 ll~~~~s~dl~~RHGalLalaei~~a 625 (1229)
+.+.....|.+.|.+++.+++.++..
T Consensus 150 v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 150 VRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 22333457888888888888877644
No 77
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=49.79 E-value=1.6e+02 Score=36.36 Aligned_cols=184 Identities=17% Similarity=0.162 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhcChhhhhhhhHHHHHhhhh-hhccCCCCCchhHHHHHHHHHHHHhhcccCCCcccccccccccccccc
Q 000911 263 GVVEALAAIFKAGGRKVLLDVIPVVWNDAST-MLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGEN 341 (1229)
Q Consensus 263 G~L~~La~ilK~g~r~~l~~~~~~i~~~~~~-l~~s~~~~~~~l~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rsL~~n 341 (1229)
|.|+-|-.++-.|.-..-.+|...|+..... +.++. +...+|+..++++.+-..
T Consensus 306 ~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~----~~~~k~laLrvL~~ml~~--------------------- 360 (516)
T KOG2956|consen 306 EALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSE----DEIIKKLALRVLREMLTN--------------------- 360 (516)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccch----hhHHHHHHHHHHHHHHHh---------------------
Confidence 6666666666666655556666666653332 44444 778899988888774311
Q ss_pred cccccccccccccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHH
Q 000911 342 MSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSE 421 (1229)
Q Consensus 342 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~dv~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~ 421 (1229)
... -.-+-.|.+|..+|+.=.|.+-.|==.|+-...++.....+..-=
T Consensus 361 ----Q~~----------------------------~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I 408 (516)
T KOG2956|consen 361 ----QPA----------------------------RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI 408 (516)
T ss_pred ----chH----------------------------hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH
Confidence 000 011348889999999888776544445566656655554444222
Q ss_pred HHHHHHHhhcCCCCCCCchhhHHH-HHHHHHhcCC--CCCCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHh
Q 000911 422 EVFSSVLELFSPGEGDGSWHGGCL-ALAELARRGL--LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAF 498 (1229)
Q Consensus 422 qVv~~vl~~f~~~~~~~~WHG~cL-aLAEL~rrgl--l~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAl 498 (1229)
.+|.-+| ++ +++. ---+|+ -+-++..|-- .+-..++++.|.+++| ..|..+.||=+|-|.+=|+
T Consensus 409 ~~i~~~I--lt--~D~~-~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqa--------y~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 409 VNISPLI--LT--ADEP-RAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQA--------YDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred HHHhhHH--hc--Ccch-HHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHH--------hcCchHHhhhhHHHhHHHH
Confidence 2222222 11 1211 111222 2334444322 1233568999999654 5678889999999999999
Q ss_pred hcccCccchHHHHHHHHH
Q 000911 499 GRAYCHTDMRNILEQIAP 516 (1229)
Q Consensus 499 aRay~~~~l~~~~~~la~ 516 (1229)
.-.---++|+||++.|-.
T Consensus 476 v~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 476 VNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred HHHHhHHhhhhHhhhccH
Confidence 888887899999999854
No 78
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=47.77 E-value=4.1e+02 Score=30.89 Aligned_cols=84 Identities=24% Similarity=0.205 Sum_probs=56.8
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHh
Q 000911 694 ENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLC 773 (1229)
Q Consensus 694 ~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~ 773 (1229)
..+.+++..++..|+.++..+ ...+.+..+.+.+.+.+...|.-.+.+||.+...-..+ .|+
T Consensus 50 ~~l~~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~-------~li 111 (335)
T COG1413 50 KLLEDEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVP-------PLV 111 (335)
T ss_pred HHHcCCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHH-------HHH
Confidence 334666888888887774322 12477788888888888899999999999997443222 222
Q ss_pred hhcccCCCCCCccHHHHHHHHHHHHHH
Q 000911 774 SCCLIEENPEDRDTEARVNAVRGLVSV 800 (1229)
Q Consensus 774 ~~~~~~~~~~~~d~E~R~~av~sL~~i 800 (1229)
.... .+.+.-.|..|..+|..+
T Consensus 112 ~~l~-----~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 112 ELLE-----NDENEGVRAAAARALGKL 133 (335)
T ss_pred HHHH-----cCCcHhHHHHHHHHHHhc
Confidence 2211 123578999999999984
No 79
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=47.45 E-value=7.2e+02 Score=31.81 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=74.2
Q ss_pred ccCCCCCCCccceeeeceeecccchhhHHHHHHHHhccccChHHHHHHHhhcccchhccCCcCCCChhHHHHHHHHHHHH
Q 000911 543 GRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEV 622 (1229)
Q Consensus 543 GR~G~~phGI~Iv~~~DyfaV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGalLalaei 622 (1229)
|-.|..|+|-.| .+||++|-.-..= =...+|+. .+++|+.++ ..+-..|..++.+-.+
T Consensus 194 ~n~gy~Pn~~~i---sqYHalGlLyq~k--r~dkma~l-----klv~hf~~n------------~smknq~a~V~lvr~~ 251 (898)
T COG5240 194 GNEGYEPNGNPI---SQYHALGLLYQSK--RTDKMAQL-----KLVEHFRGN------------ASMKNQLAGVLLVRAT 251 (898)
T ss_pred CCcccCCCCChH---HHHHHHHHHHHHh--cccHHHHH-----HHHHHhhcc------------cccccchhheehHHHH
Confidence 555667776554 4799988654321 11223332 266666641 1234456666666666
Q ss_pred HHHHhcccccCChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcCCCchH
Q 000911 623 VLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQ 702 (1229)
Q Consensus 623 ~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~ 702 (1229)
...+.+ +.+...++ .|-+..+ +.. .||.+---+++.+-++|...+ ..+..+.-...|..-|+.++..
T Consensus 252 ~~ll~~-----n~q~~~q~---rpfL~~w--ls~-k~emV~lE~Ar~v~~~~~~nv--~~~~~~~~vs~L~~fL~s~rv~ 318 (898)
T COG5240 252 VELLKE-----NSQALLQL---RPFLNSW--LSD-KFEMVFLEAARAVCALSEENV--GSQFVDQTVSSLRTFLKSTRVV 318 (898)
T ss_pred HHHHHh-----ChHHHHHH---HHHHHHH--hcC-cchhhhHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcchHH
Confidence 655543 33333333 3333221 222 356665556666665555432 2222233333444456777888
Q ss_pred HHHHHHHHHHHHHHHh
Q 000911 703 IQNAAVKALKPFVQTY 718 (1229)
Q Consensus 703 i~~aA~~Al~~l~~~y 718 (1229)
.|-+|..-+.++...|
T Consensus 319 ~rFsA~Riln~lam~~ 334 (898)
T COG5240 319 LRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 8888888777776665
No 80
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.17 E-value=1e+02 Score=39.80 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=71.5
Q ss_pred HHccCChHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHhcCCCcchhhHHHHHhhhhhc
Q 000911 1084 LKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGET 1163 (1229)
Q Consensus 1084 ~~~sk~v~kL~~~i~v~~~l~~~~~~~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll~~~d~~~~e~~d~~~~~L~~t 1163 (1229)
..++.|+....-++.-+.++. ..+..++--.-++.+|.|.-|.|||.|.--||.+.+.|.|. +-.+..-|.|-
T Consensus 117 dl~S~n~ye~giAL~GLS~fv--TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~Ek 189 (877)
T KOG1059|consen 117 DLNSSNVYEVGLALSGLSCIV--TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEK 189 (877)
T ss_pred HhccCccchhhheeccccccc--CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHh
Confidence 455888887766643333222 23666666667788999999999999999999999999744 33455556555
Q ss_pred CCCCchhHhHHHHHHHHHHhCCCCCc
Q 000911 1164 CWEGDMNVVKHQRLELYNLAGVGVGV 1189 (1229)
Q Consensus 1164 dW~~~~~~~r~~r~~l~~l~gv~~p~ 1189 (1229)
==|.|+..+-++.|=+|+|.. ..|+
T Consensus 190 LeDpDp~V~SAAV~VICELAr-KnPk 214 (877)
T KOG1059|consen 190 LEDPDPSVVSAAVSVICELAR-KNPQ 214 (877)
T ss_pred ccCCCchHHHHHHHHHHHHHh-hCCc
Confidence 446688899999999999984 4454
No 81
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.90 E-value=1.3e+02 Score=42.60 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhcCC--CCch-hHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcC-C
Q 000911 665 AVSRFIECISLSFV--SLPE-KTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT-D 740 (1229)
Q Consensus 665 A~c~lI~~ls~s~~--pl~~-~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~-~ 740 (1229)
|+-.+.+.++..+. .+.+ ++...-...+...|..+++-.+.++++|+..+...+- .......+.+..++.+. .
T Consensus 851 al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~---~~~f~a~~aq~~fdklas~ 927 (2067)
T KOG1822|consen 851 ALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVG---SAPFVASLAQNSFDKLASA 927 (2067)
T ss_pred HHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHhc
Confidence 33445555555443 2222 2333444556666789999999999999998877542 22334688888888886 5
Q ss_pred CchhhhhHHHHHhhcCChHhhh----hhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhc
Q 000911 741 PNPAIRRGSALALGVLPYELLA----NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLT 805 (1229)
Q Consensus 741 ~~~~~r~G~alaLG~lp~~~l~----~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~ 805 (1229)
..+..|.|.++|||.+.+..-. .++..-+..|..-.. +......+.+++++++.+..+.|
T Consensus 928 ~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~-----Ds~~p~VqtwSL~al~~i~~s~~ 991 (2067)
T KOG1822|consen 928 RDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALAT-----DSTSPVVQTWSLHALALILDSSG 991 (2067)
T ss_pred CCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhh-----cCCCchhhhhHHHHHHHHHcCCC
Confidence 7788999999999999876642 122221112221111 33356889999999998776544
No 82
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=45.58 E-value=5.2e+02 Score=32.23 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=81.2
Q ss_pred chhhHHHHHHHHHHHHhhcCC-CCchhHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHh
Q 000911 658 GGEIMRSAVSRFIECISLSFV-SLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYME 736 (1229)
Q Consensus 658 ggel~r~A~c~lI~~ls~s~~-pl~~~~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~ 736 (1229)
..+.++.-+-|.|+.++.+.- -+.+.+.-...++|+.. +.+.+++-..|.++.......|... ..+ .++...+-
T Consensus 342 ~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa-~ds~~~v~~~Aeed~~~~las~~P~---~~I-~~i~~~Il 416 (516)
T KOG2956|consen 342 EDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA-KDSQDEVMRVAEEDCLTTLASHLPL---QCI-VNISPLIL 416 (516)
T ss_pred hhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHhhCch---hHH-HHHhhHHh
Confidence 356777777789988776541 11222444667777776 6777777777777766666655432 111 11222221
Q ss_pred hcCCC-chhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhcc
Q 000911 737 QLTDP-NPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQ 806 (1229)
Q Consensus 737 ~l~~~-~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~ 806 (1229)
..+.+ +.+.-.-.-...+-++...+...+.++.-+++.+. +..-...|+.||-||..++..+|.
T Consensus 417 t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay------~S~SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 417 TADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY------DSTSSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred cCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh------cCchHHhhhhHHHhHHHHHHHHhH
Confidence 11111 11111112223455666666666667777777775 233478899999999999999984
No 83
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.46 E-value=8.9e+02 Score=32.02 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCccccc------ccc
Q 000911 825 LIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEK------TLF 898 (1229)
Q Consensus 825 ~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 898 (1229)
.+++++++.|-+=+.+=...+.-|-| .-|..=++.+..+..-.- +.+. ...+ +-.
T Consensus 348 rNvediv~~Lkke~~kT~~~e~d~~~-~yRqlLiktih~cav~Fp-----------------~~aa-tvV~~ll~fisD~ 408 (948)
T KOG1058|consen 348 RNVEDIVQFLKKEVMKTHNEESDDNG-KYRQLLIKTIHACAVKFP-----------------EVAA-TVVSLLLDFISDS 408 (948)
T ss_pred ccHHHHHHHHHHHHHhccccccccch-HHHHHHHHHHHHHhhcCh-----------------HHHH-HHHHHHHHHhccC
Confidence 56788888887666653333344444 457777777766531000 0000 0000 001
Q ss_pred CHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000911 899 DANLATNLVAGIVKQAVEKMDKLREAAAKVLRRI 932 (1229)
Q Consensus 899 ~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~l 932 (1229)
++... .-+-..+|-+.||..++|..-..-|..-
T Consensus 409 N~~aa-s~vl~FvrE~iek~p~Lr~~ii~~l~~~ 441 (948)
T KOG1058|consen 409 NEAAA-SDVLMFVREAIEKFPNLRASIIEKLLET 441 (948)
T ss_pred CHHHH-HHHHHHHHHHHHhCchHHHHHHHHHHHh
Confidence 12222 2345689999999999997654444433
No 84
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.32 E-value=8.8e+02 Score=31.89 Aligned_cols=192 Identities=19% Similarity=0.219 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhcChhhh-hhhhHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHhhcccCCCcccccccccccccccc
Q 000911 263 GVVEALAAIFKAGGRKVL-LDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGEN 341 (1229)
Q Consensus 263 G~L~~La~ilK~g~r~~l-~~~~~~i~~~~~~l~~s~~~~~~~l~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rsL~~n 341 (1229)
-++.++++++..-+..++ ..+++.+|.....-.+++ +.-+|+-..-++.++.
T Consensus 61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Esk----dk~VRfrvlqila~l~----------------------- 113 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESK----DKKVRFRVLQILALLS----------------------- 113 (892)
T ss_pred HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCc----chhHHHHHHHHHHHHh-----------------------
Confidence 578888888775543322 235556666555555555 5566766555554422
Q ss_pred cccccccccccccCccccccccccccCCCCCCCCCCchH-HHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhH
Q 000911 342 MSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPD-ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLS 420 (1229)
Q Consensus 342 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~dv~e-~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a 420 (1229)
++..+++| .-..+++.++..|.|+.-.||--|-++++|.-+ -|.+=-
T Consensus 114 -------------------------------d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~dee 161 (892)
T KOG2025|consen 114 -------------------------------DENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDEE 161 (892)
T ss_pred -------------------------------ccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCCc
Confidence 01112233 456677889999999999999999999999875 222322
Q ss_pred HHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCCCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhc
Q 000911 421 EEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGR 500 (1229)
Q Consensus 421 ~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaR 500 (1229)
-.|++....+.....++..=--+++-+ ..-++-+|.|+.-.. ..-|++=| -.-+|
T Consensus 162 ~~v~n~l~~liqnDpS~EVRRaaLsnI-------~vdnsTlp~IveRar-----------DV~~anRr-------lvY~r 216 (892)
T KOG2025|consen 162 CPVVNLLKDLIQNDPSDEVRRAALSNI-------SVDNSTLPCIVERAR-----------DVSGANRR-------LVYER 216 (892)
T ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhh-------ccCcccchhHHHHhh-----------hhhHHHHH-------HHHHH
Confidence 357777766665433322211122111 123344555553321 01111100 01122
Q ss_pred ccCccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHH
Q 000911 501 AYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF 538 (1229)
Q Consensus 501 ay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAf 538 (1229)
....-++...-......|+--++-|||..+|.|+.-++
T Consensus 217 ~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 217 CLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred hhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 22222333344457778999999999999999877664
No 85
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=44.11 E-value=2e+02 Score=37.84 Aligned_cols=96 Identities=27% Similarity=0.390 Sum_probs=60.6
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCCh---Hhhhhh-HHH
Q 000911 692 LNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPY---ELLANS-WRD 767 (1229)
Q Consensus 692 l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~---~~l~~~-~~~ 767 (1229)
+..-+.|+++.||..|...+..+ ..++-.+.+++-..+.++++++.+|+-.|+|++-++. .+.... ...
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l-------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~ 169 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLL-------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLID 169 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHH
Confidence 44446999999998776655322 1111123444444445578999999999999988762 333332 333
Q ss_pred HHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhh
Q 000911 768 VLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 803 (1229)
Q Consensus 768 il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t 803 (1229)
++..|. .+.|+..=+||+.+|..++..
T Consensus 170 ~l~~l~---------~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 170 ILKELV---------ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHh---------hCCCchHHHHHHHHHHHhchh
Confidence 333343 244688899999999987653
No 86
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=43.66 E-value=2.6e+02 Score=32.22 Aligned_cols=210 Identities=19% Similarity=0.243 Sum_probs=91.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhccCCCCCCcchHHHhhhcCCCcccCcCCCCChhHHHhhhcCchhhHHHHhhccee
Q 000911 910 IVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVI 989 (1229)
Q Consensus 910 llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~pip~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~~y~~~ll~GLv~ 989 (1229)
-+|-.++||+.+...++..+... ... +|. .| +++.+ .+ ...+..+|..|+++.+.+..+..++.
T Consensus 11 ~~~~~~~~lk~ll~~~~e~~~~~-~~~-----~~~--~l-q~L~~------cs-p~q~e~lc~~L~l~~lsd~~l~~lc~ 74 (263)
T PF11510_consen 11 HIQDQVPRLKELLETESEGLEGL-EDA-----PPS--EL-QFLNE------CS-PSQVEMLCSQLQLPQLSDDGLLQLCS 74 (263)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------H--HH-HGGGG---------HHHHHHHHHHHTGGG--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccc-cCC-----ChH--HH-HHHHh------CC-HHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 35668899999999888855533 221 121 22 22211 11 12467789999999999999999999
Q ss_pred ecccCccchHHHHHHHHHHHHhccccccchhcchHHHHHHHHHHHHHHhhcC--CCceecc----------HHHHHHHHH
Q 000911 990 SIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRR--CDRVIVP----------TLKTIESLF 1057 (1229)
Q Consensus 990 S~Gglteslvk~S~~aL~~yl~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~--~dRv~vP----------~L~tl~~Ll 1057 (1229)
+..+++.++...+...|+..+---.+-.- ....-..+...+....+.|-. .+=+.+| --+.+..++
T Consensus 75 ~ll~Ls~dls~~~a~~l~~sl~LpkilsL--~~~ASR~L~sal~~f~k~~p~~~~~all~PlL~~~~~g~~Q~eLl~rlv 152 (263)
T PF11510_consen 75 SLLALSPDLSHSNATVLLRSLFLPKILSL--EEPASRLLVSALTSFCKKYPRPVCEALLVPLLQAPGLGPPQCELLCRLV 152 (263)
T ss_dssp HHHH-SS---HHHHHHHHHHHHHHHHHH---SS---HHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT--HHHHHHHHHHH
T ss_pred HHHccCcccchhhHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99888877666666666543210000000 111122345555555554421 2224444 455667777
Q ss_pred hccccccccCCchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCChhhhHHH--HH
Q 000911 1058 SKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKAS--AE 1135 (1229)
Q Consensus 1058 ~~g~f~~~~~~~~~~~~~l~~l~~~e~~~sk~v~kL~~~i~v~~~l~~~~~~~~~~a~~~L~~lL~H~~PkVR~~~--Ae 1135 (1229)
..++++.+ +..-++..++....+ +.-+.|+..++....+.-.+.+..++..|+..=|..-+.. |.
T Consensus 153 k~~~l~p~--~~~l~l~~~L~~~W~-----------E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~skSlkFak 219 (263)
T PF11510_consen 153 KKECLEPD--HRLLLLRQILELVWN-----------EETFLVLQSLLERKVELSQELFSLLVELLCEQAPQFSKSLKFAK 219 (263)
T ss_dssp H-TTS-HH--HHHHHHHHHHHS--------------HHHHHHHHHHHTT-----HHHHHHHHHHHH--------SHHHHH
T ss_pred HhccCCHH--HHHHHHHHHHhCcCc-----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhcchHHHH
Confidence 44455321 100223333322222 3456777777765555666777777776666555443322 22
Q ss_pred HHHHHHHhcCCCcch
Q 000911 1136 QVYLVLLQNGNILEE 1150 (1229)
Q Consensus 1136 ~lY~~Ll~~~d~~~~ 1150 (1229)
-+...+..|+..+.+
T Consensus 220 LlLtvltKy~~~it~ 234 (263)
T PF11510_consen 220 LLLTVLTKYQSQITE 234 (263)
T ss_dssp HHHHHHHHTGGG--H
T ss_pred HHHHHHHHcchhccH
Confidence 333333335544443
No 87
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=42.93 E-value=1.7e+02 Score=38.37 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=57.0
Q ss_pred HHHHHHHhh---ccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccH
Q 000911 711 LKPFVQTYM---VAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDT 787 (1229)
Q Consensus 711 l~~l~~~y~---~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~ 787 (1229)
++.|+-.|. ....++..--.+..+.+.++++|+..|.-....||.++-.-+. ..+++.+.++. ++..+
T Consensus 71 lKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~---~~~~~~ik~~l------~d~~a 141 (757)
T COG5096 71 LKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELL---GNIIDPIKKLL------TDPHA 141 (757)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHH---HHHHHHHHHHc------cCCcH
Confidence 555655554 2222333345667788889999999999889999998854332 23444444442 56679
Q ss_pred HHHHHHHHHHHHHHh
Q 000911 788 EARVNAVRGLVSVCE 802 (1229)
Q Consensus 788 E~R~~av~sL~~i~~ 802 (1229)
..|++|+-|+.++.+
T Consensus 142 yVRk~Aalav~kly~ 156 (757)
T COG5096 142 YVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999874
No 88
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=41.67 E-value=2.7e+02 Score=38.15 Aligned_cols=134 Identities=15% Similarity=0.217 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHH----hhc-CC-CchhhhhHHHHHhhcCC
Q 000911 684 TKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYM----EQL-TD-PNPAIRRGSALALGVLP 757 (1229)
Q Consensus 684 ~~~~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~----~~l-~~-~~~~~r~G~alaLG~lp 757 (1229)
.+++.+-.+--++..+...||..|.+++.++....-.. + .....++..|+ +.+ .+ .+..+|-.||..|+.|-
T Consensus 459 ~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~-~-~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 459 KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI-P-PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC-C-cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 34566666666779999999999999988877653221 1 11256777775 333 34 67788999999888874
Q ss_pred hH----hhhh---------------------------hHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhcc
Q 000911 758 YE----LLAN---------------------------SWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQ 806 (1229)
Q Consensus 758 ~~----~l~~---------------------------~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~ 806 (1229)
.. +-.. .+...++.++.... .+...-.|+..+++|+.+|.=.|-
T Consensus 537 ~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLl-----sd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 537 KTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLL-----SDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHH-----cCCchHHHHHHHHHHHHHHHHhhh
Confidence 32 2100 01111111111111 122356788888888888876654
Q ss_pred ccccccccCCchhhhHhhhhHHHHHHHHHHhcccc
Q 000911 807 SQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDY 841 (1229)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DY 841 (1229)
. ...|-++.+|...|||=
T Consensus 612 ~-----------------ksND~iLshLiTfLNDk 629 (1431)
T KOG1240|consen 612 E-----------------KSNDVILSHLITFLNDK 629 (1431)
T ss_pred c-----------------ccccchHHHHHHHhcCc
Confidence 3 23456888888999885
No 89
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=41.02 E-value=8.9e+02 Score=31.04 Aligned_cols=322 Identities=16% Similarity=0.153 Sum_probs=156.1
Q ss_pred HhhcCCCchhhhhHHHHHhhcCC-hHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccc
Q 000911 735 MEQLTDPNPAIRRGSALALGVLP-YELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLI 813 (1229)
Q Consensus 735 ~~~l~~~~~~~r~G~alaLG~lp-~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~ 813 (1229)
+..|.++.+-.....+.++|++- ..+.++.|......+++.+..++. ..-.+.++..++.+|+... |
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp-----~~~k~~sl~~~gy~ces~~----P--- 167 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQP-----VSGKCESLGICGYHCESEA----P--- 167 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCc-----hHhHHHHHHHHHHHhhccC----H---
Confidence 34567888777777888888875 455567788888888877654433 4456778888888887532 1
Q ss_pred cCCchhhhHhhhhHHHHHHHHH-HhccccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCC-CCCCCCCccccccCCCCc
Q 000911 814 HSGEDEISLFHLIKNEVMTSLF-KALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDF-VPSPEKPQEVKSELPGNV 891 (1229)
Q Consensus 814 ~~~~~~~~~~~~~~~~v~~~Ll-~~L~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~ 891 (1229)
.......+.++-.+. .++..=| -|-||.+|+++|.+-+......-. -+.++-.-+. .-++
T Consensus 168 -------e~li~~sN~il~aiv~ga~k~et-------~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqv----vcea 229 (858)
T COG5215 168 -------EDLIQMSNVILFAIVMGALKNET-------TSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQV----VCEA 229 (858)
T ss_pred -------HHHHHHhhHHHHHHHHhhcccCc-------hHHHHHHHHHHHHHHHHHHHHhhcchhhhchhhee----eehh
Confidence 111122233333333 3343333 377999999999883322221000 0000000000 0000
Q ss_pred cccccccCHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHH-HHHhhccCCCCCCcchHHHhhhcCCCcccCcCCCCChh
Q 000911 892 TAEKTLFDANLATNLVAGIVKQAVEKMDKLR---EAAAKVL-RRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSY 967 (1229)
Q Consensus 892 ~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR---~~A~~~l-~~ll~~~~~~~pip~~~~L~~i~~~~~~~~w~~~~~~f 967 (1229)
..--+.++.+..++|+.|.-.=--+-+- +.|...+ -+.+++.+..+-+..-|....|+..+.+.+. ....|
T Consensus 230 ---tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~--e~~~~ 304 (858)
T COG5215 230 ---TQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEM--EDKYL 304 (858)
T ss_pred ---ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHH--HHhhc
Confidence 0112456666677776655432222111 1111111 1111111000001111222222222211111 00112
Q ss_pred HHHhhhcCchhhHHHHhhcceeecccCccchHHHHHHHHHHHHhccccccch--hcchHHHHHHHHHHHHHHhhcCCCce
Q 000911 968 PRFVHLLRFSCYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLD--ARSSREYMLYNDILWVLQHYRRCDRV 1045 (1229)
Q Consensus 968 p~~~~LL~~~~y~~~ll~GLv~S~Gglteslvk~S~~aL~~yl~~~~~~~~~--~~~~~l~~~~~~ll~il~~~~~~dRv 1045 (1229)
| +.|.-.+ | ...+-++.-.--|+..+. .|..| .+.=....-....+++|.++. .|.+
T Consensus 305 p------e~p~qn~----~-------fa~aav~dvlP~lL~LL~---~q~ed~~~DdWn~smaA~sCLqlfaq~~-gd~i 363 (858)
T COG5215 305 P------EVPAQNH----G-------FARAAVADVLPELLSLLE---KQGEDYYGDDWNPSMAASSCLQLFAQLK-GDKI 363 (858)
T ss_pred c------cCchhhc----c-------hHHHHHHHHHHHHHHHHH---hcCCCccccccchhhhHHHHHHHHHHHh-hhHh
Confidence 2 1221111 1 111112222223344443 11111 122235566677888887744 4667
Q ss_pred eccHHHHHHHHHhccccccccCCchhHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhhcCCc-----hhHHHHHHHHHH
Q 000911 1046 IVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLDSLAVELKATKDFSKLYAGIAILGYIASVSD-----PISTRAFSYLLN 1120 (1229)
Q Consensus 1046 ~vP~L~tl~~Ll~~g~f~~~~~~~~~~~~~l~~l~~~e~~~sk~v~kL~~~i~v~~~l~~~~~-----~~~~~a~~~L~~ 1120 (1229)
.-|.|.+++.=+.+ .|-+...+++-.||.++.-|. .+-.+|+.-+..
T Consensus 364 ~~pVl~FvEqni~~----------------------------~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n 415 (858)
T COG5215 364 MRPVLGFVEQNIRS----------------------------ESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN 415 (858)
T ss_pred HHHHHHHHHHhccC----------------------------chhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence 77777766554433 233345566666777765442 345678888888
Q ss_pred HhcCCChhhhHHHHHHHHHH
Q 000911 1121 FLGHRFPKIRKASAEQVYLV 1140 (1229)
Q Consensus 1121 lL~H~~PkVR~~~Ae~lY~~ 1140 (1229)
++.-+--.|..+||..+|..
T Consensus 416 ~m~D~~l~vk~ttAwc~g~i 435 (858)
T COG5215 416 EMSDSCLWVKSTTAWCFGAI 435 (858)
T ss_pred hcccceeehhhHHHHHHHHH
Confidence 99999999999999998875
No 90
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.37 E-value=6.9e+02 Score=33.41 Aligned_cols=187 Identities=17% Similarity=0.206 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhhhcC-CchhhHHHHHHHHHhcCCChHHH--HHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHh
Q 000911 198 LVMRILGFCKDYLSNA-GPMRTIAGLLLAKLLTRPDMPTA--FASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKA 274 (1229)
Q Consensus 198 l~~rIl~l~~~yL~~~-~k~r~aAa~LLsrl~tR~D~~~~--l~~fl~w~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~ 274 (1229)
+-..-++.+..++..+ ...|-+|-.-|++++-.++-.+. ...-++-.++.+... ++|....+.+.++.+.-.
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-----dsyvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-----DSYVYLNAIRGVVSLCEV 798 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-----CceeeHHHHHHHHHHHHh
Confidence 3345588899999888 67788888888888873344333 334444444555432 124443555533333221
Q ss_pred cChhhhhhhhHHHHHhhhhhhccCCCCC--chhHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccc
Q 000911 275 GGRKVLLDVIPVVWNDASTMLKSGSAAR--SPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREID 352 (1229)
Q Consensus 275 g~r~~l~~~~~~i~~~~~~l~~s~~~~~--~~l~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rsL~~nl~~~~~~~~~~ 352 (1229)
-.++++|-+...|.. .++.-+- --.+-.-++|++|+.|-++
T Consensus 799 -y~e~il~dL~e~Y~s-----~k~k~~~d~~lkVGEai~k~~qa~Gel~------------------------------- 841 (982)
T KOG4653|consen 799 -YPEDILPDLSEEYLS-----EKKKLQTDYRLKVGEAILKVAQALGELV------------------------------- 841 (982)
T ss_pred -cchhhHHHHHHHHHh-----cccCCCccceehHHHHHHHHHHHhccHH-------------------------------
Confidence 344444444443321 1110000 0122245667777766332
Q ss_pred ccCccccccccccccCCCCCCCCCCchHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcC---hhhHHHHHHHHHh
Q 000911 353 QCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLT---SSLSEEVFSSVLE 429 (1229)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~ed~dv~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~---~~~a~qVv~~vl~ 429 (1229)
..--+-+|+.+|.+++|+|-..|-|+--.+|..+-++. .+..-||+.-|+.
T Consensus 842 --------------------------~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~ 895 (982)
T KOG4653|consen 842 --------------------------FKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILS 895 (982)
T ss_pred --------------------------HHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 23456899999999999999999999999999998887 4455556666655
Q ss_pred hcCCCCCCCchhhHHHHHHHHHh
Q 000911 430 LFSPGEGDGSWHGGCLALAELAR 452 (1229)
Q Consensus 430 ~f~~~~~~~~WHG~cLaLAEL~r 452 (1229)
......+...=-.+..-++++.+
T Consensus 896 l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 896 LETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHccCCchhhHHHHHHHHHHHHh
Confidence 55443222222334555566554
No 91
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=38.34 E-value=32 Score=25.43 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=12.3
Q ss_pred hHHHhhhhhhhhHh
Q 000911 400 VRWSAAKGIGRITS 413 (1229)
Q Consensus 400 VRwsaAKglgrI~~ 413 (1229)
||++||++||+|..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 89999999999987
No 92
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=37.62 E-value=9.9e+02 Score=30.57 Aligned_cols=219 Identities=16% Similarity=0.235 Sum_probs=105.9
Q ss_pred HHHHHhhcCC-CCchhHHHHHHHHHHhhcCCCchH--------HHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcC
Q 000911 669 FIECISLSFV-SLPEKTKRSLLDTLNENLRHPNSQ--------IQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLT 739 (1229)
Q Consensus 669 lI~~ls~s~~-pl~~~~~~~~~~~l~~~L~~~~~~--------i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~ 739 (1229)
||+-+..+.. ++.++..+...+++-..++..+.. ++.+-.+-++++....- ...-..+-++|+..|+
T Consensus 16 Lieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS----~~rF~sVsdRF~~eL~ 91 (552)
T PF14222_consen 16 LIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLS----EIRFVSVSDRFIAELE 91 (552)
T ss_pred HHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHH----hhhChHHHHHHHHHHH
Confidence 4444443333 456666667777766666555442 23233333333333211 1111467778888774
Q ss_pred ----CCchhhhhHHHHHhhcCChHhhh----hhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccc
Q 000911 740 ----DPNPAIRRGSALALGVLPYELLA----NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENS 811 (1229)
Q Consensus 740 ----~~~~~~r~G~alaLG~lp~~~l~----~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~ 811 (1229)
+.+ ..+....+.+..+-+.-++ ..+++-.+-+..+.+.-.+.. +..+.+.+-.+.|..++.-+.....
T Consensus 92 ~~~~~~~-~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h-~~~~ik~A~~~~l~~lLlPvA~~~~-- 167 (552)
T PF14222_consen 92 KLRKDSN-DAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAH-KKSDIKHAYCEVLVELLLPVAATAT-- 167 (552)
T ss_pred HhcccCC-chHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHhhccc--
Confidence 123 3333344444444332221 234444444433332221111 3344555555555555543322211
Q ss_pred cccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHHHHhhccCCCCCCCCCccccccCCCCc
Q 000911 812 LIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNV 891 (1229)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 891 (1229)
. .+..-.-.+.++.+..-..+....+|- | ..|..-++.+||
T Consensus 168 ~--------evn~P~W~~~v~~i~~~~~~~~~K~kh----w-----~~afPL~t~lLC---------------------- 208 (552)
T PF14222_consen 168 A--------EVNHPKWKEAVETIYPRAAKMMSKPKH----W-----NVAFPLVTTLLC---------------------- 208 (552)
T ss_pred c--------cccccHHHHHHHHHHHHHHHHHhCcch----h-----hhHHHHHHHHHh----------------------
Confidence 0 111112233344444444444444443 1 124555556676
Q ss_pred cccccccCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 000911 892 TAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNK 936 (1229)
Q Consensus 892 ~~~~~~~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~ 936 (1229)
-.+++.|..+...+++..+....=+| ..|..|..++.|++..+
T Consensus 209 vS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvY 251 (552)
T PF14222_consen 209 VSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVY 251 (552)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHH
Confidence 33456664443326777777777788 89999999999998665
No 93
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.58 E-value=1.5e+02 Score=38.95 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCc------hhhHHHHHHHHHhcC
Q 000911 381 ILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGS------WHGGCLALAELARRG 454 (1229)
Q Consensus 381 ~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~------WHG~cLaLAEL~rrg 454 (1229)
.-|.++...++.|+|.|+.|=.+|-+|+.-.+.--|..+-.+..+.-.+.=+..-.|.. .--...+++||+.+-
T Consensus 765 ~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y 844 (982)
T KOG4653|consen 765 QGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY 844 (982)
T ss_pred hHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH
Confidence 45678899999999999999999999999999998887766666655443322212222 223556666665543
Q ss_pred CCCCCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhH
Q 000911 455 LLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAA 534 (1229)
Q Consensus 455 ll~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaA 534 (1229)
...++...++++. | +.| --|=+||=..=-+.+.-.- -...++.+.+..++...--|+++-+||||
T Consensus 845 ------~~~Li~tfl~gvr-e------pd~-~~RaSS~a~lg~Lcq~~a~-~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 845 ------KAVLINTFLSGVR-E------PDH-EFRASSLANLGQLCQLLAF-QVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred ------HHHHHHHHHHhcC-C------chH-HHHHhHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 2445555555543 1 111 1244444333233333221 12247888888888888889999999999
Q ss_pred HHHHHHhhccCC
Q 000911 535 AAAFQENVGRQG 546 (1229)
Q Consensus 535 sAAfQE~VGR~G 546 (1229)
.-.+=|+.--.|
T Consensus 910 v~li~~lL~~tg 921 (982)
T KOG4653|consen 910 VHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHHhccc
Confidence 998888864333
No 94
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=37.38 E-value=1e+03 Score=30.58 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHH
Q 000911 825 LIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 825 ~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~ 865 (1229)
+..+..++++++.++|= | +-||.+||++|..++
T Consensus 55 ~l~~~Ai~a~~DLcEDe------d--~~iR~~aik~lp~~c 87 (556)
T PF05918_consen 55 DLQEEAINAQLDLCEDE------D--VQIRKQAIKGLPQLC 87 (556)
T ss_dssp GGHHHHHHHHHHHHT-S------S--HHHHHHHHHHGGGG-
T ss_pred hhHHHHHHHHHHHHhcc------c--HHHHHHHHHhHHHHH
Confidence 45677888888888752 4 449999999997653
No 95
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=35.29 E-value=8e+02 Score=28.83 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhhc-CCc----hhHHHHHHHHHHHhcCCChhhhHHHHHHH---HHHHHhcCCCcchhhHHHHHhhhh
Q 000911 1090 FSKLYAGIAILGYIAS-VSD----PISTRAFSYLLNFLGHRFPKIRKASAEQV---YLVLLQNGNILEEDKTEKALEIIG 1161 (1229)
Q Consensus 1090 v~kL~~~i~v~~~l~~-~~~----~~~~~a~~~L~~lL~H~~PkVR~~~Ae~l---Y~~Ll~~~d~~~~e~~d~~~~~L~ 1161 (1229)
..-..+++.-.+-|+. .+. ....+++.+|..+|-+.-+-||.+++|.+ ||.-...++....++++++.+.|.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~ 279 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR 279 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH
Confidence 3445677777777765 342 23456788899999999999999999975 554332222222233444444444
Q ss_pred h
Q 000911 1162 E 1162 (1229)
Q Consensus 1162 ~ 1162 (1229)
+
T Consensus 280 ~ 280 (309)
T PF05004_consen 280 E 280 (309)
T ss_pred H
Confidence 3
No 96
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=35.08 E-value=67 Score=31.02 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhc
Q 000911 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELF 431 (1229)
Q Consensus 380 e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f 431 (1229)
..++.|+..++..|+|.|..|=.+|-||++-++.+-|.+ |+..+++.|
T Consensus 39 ~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----vl~~L~~~y 86 (92)
T PF10363_consen 39 IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----VLPILLDEY 86 (92)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH----HHHHHHHHH
Confidence 458999999999999999999999999999999999875 555555554
No 97
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=34.39 E-value=5.4e+02 Score=35.57 Aligned_cols=268 Identities=17% Similarity=0.181 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhhhcCCchhhHHHHHHHHHhcCCChHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHhc--
Q 000911 198 LVMRILGFCKDYLSNAGPMRTIAGLLLAKLLTRPDMPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAG-- 275 (1229)
Q Consensus 198 l~~rIl~l~~~yL~~~~k~r~aAa~LLsrl~tR~D~~~~l~~fl~w~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~g-- 275 (1229)
+...++.-|++.|... -.+-+|-.||..+-++-|-...|+.-+=|....+..+.. .+.. -.|.+|++++...
T Consensus 422 l~vs~lts~IR~lk~~-~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a----~Vra-~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTI-QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEA----DVRA-TALETLTELLALVRD 495 (1431)
T ss_pred eeHHHHHHHHHhhhcc-hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchH----HHHH-HHHHHHHHHHhhccC
Confidence 4456777777775443 344566677777777766655544444444444443221 1444 6677888887644
Q ss_pred -ChhhhhhhhHHHHHhhhhhhccCCCCCchhHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccc
Q 000911 276 -GRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQC 354 (1229)
Q Consensus 276 -~r~~l~~~~~~i~~~~~~l~~s~~~~~~~l~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rsL~~nl~~~~~~~~~~~~ 354 (1229)
++.+-.=|..-+|....++...+ ....+|-..--.+..+|.+.. |+.--++.+-.|
T Consensus 496 ~~~~daniF~eYlfP~L~~l~~d~---~~~~vRiayAsnla~LA~tA~-------rFle~~q~~~~~------------- 552 (1431)
T KOG1240|consen 496 IPPSDANIFPEYLFPHLNHLLNDS---SAQIVRIAYASNLAQLAKTAY-------RFLELTQELRQA------------- 552 (1431)
T ss_pred CCcccchhhHhhhhhhhHhhhccC---ccceehhhHHhhHHHHHHHHH-------HHHHHHHHHHhc-------------
Confidence 23443334444455444444332 022333333333333443322 222222222111
Q ss_pred CccccccccccccCCCCCCCCCCchHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhc-CC
Q 000911 355 DHSVVDSLKSEQNRNCPEDEGMDVPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELF-SP 433 (1229)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~ed~dv~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f-~~ 433 (1229)
|.-+..+... ..+..-+.+....++.|=+....-|.|.+++||=+.-.+|+.++..--++=+++||=+.|=.| +.
T Consensus 553 --g~~n~~nset--~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLND 628 (1431)
T KOG1240|consen 553 --GMLNDPNSET--APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLND 628 (1431)
T ss_pred --ccccCccccc--ccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcC
Confidence 0000000000 000011112222233333333344679999999999999999999988887777665555333 21
Q ss_pred CC-----------------------------------CC---CchhhHHHHHHHHHhcCCCCCCCccchHHHHHHhheEe
Q 000911 434 GE-----------------------------------GD---GSWHGGCLALAELARRGLLLPSSLPKVVPVIVKALHYD 475 (1229)
Q Consensus 434 ~~-----------------------------------~~---~~WHG~cLaLAEL~rrgll~p~~L~~vv~~v~~aL~fd 475 (1229)
.+ .| ...-.++=+|.-|+.-|++--..+-+++..+.--|.+-
T Consensus 629 kDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 629 KDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP 708 (1431)
T ss_pred ccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc
Confidence 10 11 11223444455566666542222223322222222221
Q ss_pred eccccccCCccccchhhHHHHHhhcccCccc
Q 000911 476 IRRGSHSVGSHVRDAAAYVCWAFGRAYCHTD 506 (1229)
Q Consensus 476 ~rrg~~SvGs~VRDAACyv~WAlaRay~~~~ 506 (1229)
-.=||=|+|=++-+.+|..+..+
T Consensus 709 --------N~WIR~~~~~iI~~~~~~ls~ad 731 (1431)
T KOG1240|consen 709 --------NLWIRRAVLGIIAAIARQLSAAD 731 (1431)
T ss_pred --------hHHHHHHHHHHHHHHHhhhhhhh
Confidence 23489999999999999987644
No 98
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=33.97 E-value=5.4e+02 Score=27.26 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHHHhhhccccccccccCCchhhhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHH
Q 000911 786 DTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 786 d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~ 865 (1229)
+++.|-.++.-+..+|+.-| ..........-++.++.-|+. +-+.-+.++|+.++..+.
T Consensus 38 ~~~~rw~G~~Ll~~~~~~~~--------------~e~l~~~~~~W~~~Ll~~L~~-------~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 38 SAYSRWAGLCLLKVTVEQCS--------------WEILLSHGSQWLRALLSILEK-------PDPPSVLEAAIITLTRLF 96 (165)
T ss_pred ChhhHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHH
Confidence 57788777776655554211 133334556677777777777 667889999999999886
Q ss_pred HHhhccCCCCCCCCCccccccCCCCccccccccCHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHhhccCCCCCCc
Q 000911 866 YILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMD--KLREAAAKVLRRILYNKTIFVPIP 943 (1229)
Q Consensus 866 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~llrqa~EKiD--rvR~~A~~~l~~ll~~~~~~~pip 943 (1229)
....+ -+.+ .-+....-+.++++-....++ .....|..+|..++.+. |+.--|
T Consensus 97 ~~~~~-----------------------~p~l-~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~-ptt~rp 151 (165)
T PF08167_consen 97 DLIRG-----------------------KPTL-TREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHH-PTTFRP 151 (165)
T ss_pred HHhcC-----------------------CCch-HHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHC-Cccccc
Confidence 44331 1111 122233335555665666666 88899999999999765 322267
Q ss_pred chHHHhhh
Q 000911 944 HREKLEEI 951 (1229)
Q Consensus 944 ~~~~L~~i 951 (1229)
+...++.+
T Consensus 152 ~~~ki~~~ 159 (165)
T PF08167_consen 152 FANKIESA 159 (165)
T ss_pred hHHHHHHH
Confidence 77666544
No 99
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=31.09 E-value=6.8e+02 Score=32.36 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=67.6
Q ss_pred CCCchhhHHHHHHHHH--hcCCCCCC-CccchHHHHHHhheEeeccccc--cCCccccchhhHHHHHhhcccC--ccc-h
Q 000911 436 GDGSWHGGCLALAELA--RRGLLLPS-SLPKVVPVIVKALHYDIRRGSH--SVGSHVRDAAAYVCWAFGRAYC--HTD-M 507 (1229)
Q Consensus 436 ~~~~WHG~cLaLAEL~--rrgll~p~-~L~~vv~~v~~aL~fd~rrg~~--SvGs~VRDAACyv~WAlaRay~--~~~-l 507 (1229)
-+..-||..+-.|... ..+-+.|. .+|+.+-+..+-+ ...... -.-..+.|+.+|..|-.-.... ... -
T Consensus 359 ipl~~~G~llL~~~~~~~~~~~~~~~~~~~d~i~l~lr~~---~~~~~~~~~~~~gl~d~~~~l~~~~~~~~~~~~~~l~ 435 (633)
T PF08568_consen 359 IPLSTSGCLLLLANMYFETSDHLCPIISFPDHIYLLLRFL---TPSLQSPSFQNKGLEDALLFLLWVALTSSSIELSELP 435 (633)
T ss_pred CCCCcchHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc---CccccchhhcchhHHHHHHHHHHHhcCCcccccccCC
Confidence 3556688655555443 33334444 5688888886655 111111 1123478999999876655554 222 2
Q ss_pred HHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhh
Q 000911 508 RNILEQIAPHLLTVACYDREVNCRRAAAAAFQENV 542 (1229)
Q Consensus 508 ~~~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~V 542 (1229)
..........|+.++++=++.++|+.+-..+|..+
T Consensus 436 ~~~~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL 470 (633)
T PF08568_consen 436 SEVFMQFLQALLLISVYCPSPELRKIAFTLLTRIL 470 (633)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35667888999999999999999998888887665
No 100
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=30.80 E-value=7.5e+02 Score=33.14 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=70.7
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhh-----
Q 000911 687 SLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELL----- 761 (1229)
Q Consensus 687 ~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l----- 761 (1229)
.....+-+++......+++++++++.+++..| ..+.+....+..++..|+..+.+-.+.++..-..+-
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 33444556678888899999999998887743 124556666666788888888776777665533321
Q ss_pred hhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhc
Q 000911 762 ANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLT 805 (1229)
Q Consensus 762 ~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~ 805 (1229)
......++..++..+ .+.+.+.|.+|..+++.+...+|
T Consensus 409 ~~t~~~l~p~~~~~~------~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHI------NDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred hhhHHHHhHHHhhhc------cCCcHHHHHHHHHHHHHHHHHhh
Confidence 122333444444332 46689999999999999887665
No 101
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=30.52 E-value=3.5e+02 Score=33.22 Aligned_cols=87 Identities=18% Similarity=0.070 Sum_probs=54.4
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCChHhhhhhHHHH
Q 000911 689 LDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLANSWRDV 768 (1229)
Q Consensus 689 ~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~~~l~~~~~~i 768 (1229)
.+.+-+.|..+++.++.++++||..+- ........+..+++.++..|++.+-++|..-. .....+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~----~~~~~L 152 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH----DPGPAL 152 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc----ChHHHH
Confidence 344555667788889999999985321 13445555566677788888777777766221 112222
Q ss_pred HHHHhhhcccCCCCCCccHHHHHHHHHHHHHH
Q 000911 769 LLKLCSCCLIEENPEDRDTEARVNAVRGLVSV 800 (1229)
Q Consensus 769 l~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i 800 (1229)
+..| .+.++..|..|+++|..+
T Consensus 153 ~~~L----------~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 153 EAAL----------THEDALVRAAALRALGEL 174 (410)
T ss_pred HHHh----------cCCCHHHHHHHHHHHHhh
Confidence 2222 234688999999999875
No 102
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=27.81 E-value=50 Score=31.84 Aligned_cols=20 Identities=45% Similarity=0.569 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHHHHHHHh
Q 000911 608 DLCTRHGATLAAGEVVLALC 627 (1229)
Q Consensus 608 dl~~RHGalLalaei~~al~ 627 (1229)
++..|||++|+++.++.++.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~P 21 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFP 21 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S
T ss_pred hHHHHHHHHHHHHHHHHHcC
Confidence 46789999999999998884
No 103
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=27.73 E-value=7.8e+02 Score=32.19 Aligned_cols=172 Identities=9% Similarity=0.006 Sum_probs=115.2
Q ss_pred chHHHHHHHHHHHHhccccccchhcchHHHHHHHHHHHHHHhhcCCCceeccHHHHHHHHHhccccccccCCchhHHHHH
Q 000911 997 SLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGV 1076 (1229)
Q Consensus 997 slvk~S~~aL~~yl~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~Ll~~g~f~~~~~~~~~~~~~l 1076 (1229)
.-+-+....++.++.+ .++ ..+....+.-.|..+++. -.+.++.+-+++=++.|++. -+.+++.+.+
T Consensus 324 ~~~vp~~LP~v~~i~~--~~s---~~~~~~~~~p~l~pi~~~-~~~~~~~l~i~e~mdlL~~K-------t~~e~~~~~I 390 (700)
T KOG2137|consen 324 TKMVPIVLPLVLLIAE--GLS---QNEFGPKMLPALKPIYSA-SDPKQALLFILENMDLLKEK-------TPPEEVKEKI 390 (700)
T ss_pred ccccccccchhhhhhh--ccc---hhhhhhhhhHHHHHHhcc-CCcccchhhHHhhHHHHHhh-------CChHHHHHHH
Confidence 3344455556666651 121 233355666777777776 56778999999999999986 1222667888
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhhcC-Cc-hhHHHHHHHHHH-HhcCCChhhhHHHHHHHHHHHHhcCCCcchhhH
Q 000911 1077 LDSLAVELKATKDFSKLYAGIAILGYIASV-SD-PISTRAFSYLLN-FLGHRFPKIRKASAEQVYLVLLQNGNILEEDKT 1153 (1229)
Q Consensus 1077 ~~l~~~e~~~sk~v~kL~~~i~v~~~l~~~-~~-~~~~~a~~~L~~-lL~H~~PkVR~~~Ae~lY~~Ll~~~d~~~~e~~ 1153 (1229)
+.+++. ..++.+++.-..+++++..++.. +. .+++..+-++.. ++.|--+.|+..+...+=++....+ ....+
T Consensus 391 lplL~~-S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD---~~~v~ 466 (700)
T KOG2137|consen 391 LPLLYR-SLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD---KAAVL 466 (700)
T ss_pred HHHHHH-HhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH---HHHhH
Confidence 888776 47788899889999999887753 32 556677777776 7788888999988888876654443 23456
Q ss_pred HHHHhhhhhcCCCCchhHhHHHHHHHHHHhCCCC
Q 000911 1154 EKALEIIGETCWEGDMNVVKHQRLELYNLAGVGV 1187 (1229)
Q Consensus 1154 d~~~~~L~~tdW~~~~~~~r~~r~~l~~l~gv~~ 1187 (1229)
|++..++..+.=.++.-..+-. ++++-+.+..
T Consensus 467 d~~lpi~~~~~~~dp~iv~~~~--~i~~~l~~~~ 498 (700)
T KOG2137|consen 467 DELLPILKCIKTRDPAIVMGFL--RIYEALALII 498 (700)
T ss_pred HHHHHHHHHhcCCCcHHHHHHH--HHHHHHHhhc
Confidence 7888888888776665443333 3444444433
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=26.69 E-value=3.5e+02 Score=31.43 Aligned_cols=132 Identities=23% Similarity=0.320 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhH--------HHHHHHH
Q 000911 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGG--------CLALAEL 450 (1229)
Q Consensus 379 ~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~--------cLaLAEL 450 (1229)
|+.++..+..|-. |.+-.||++++.++|++-..=. +..+++.++......+++.. -.++..|
T Consensus 104 ~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a-------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l 173 (335)
T COG1413 104 PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA-------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL 173 (335)
T ss_pred hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh-------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH
Confidence 4556666655555 8999999999999999865432 45555555443211133222 1223333
Q ss_pred HhcCCCCCCCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchh
Q 000911 451 ARRGLLLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNC 530 (1229)
Q Consensus 451 ~rrgll~p~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevni 530 (1229)
+..|. +..++.+...+..... .-=+.|++.++|...-. .-+...+..+.-|.+.++
T Consensus 174 ~~~~~------~~~~~~l~~~l~~~~~-------~vr~~Aa~aL~~~~~~~-----------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 174 GELGD------PEAIPLLIELLEDEDA-------DVRRAAASALGQLGSEN-----------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHcCC------hhhhHHHHHHHhCchH-------HHHHHHHHHHHHhhcch-----------hhHHHHHHHHhcCCCHHH
Confidence 33332 4455555555544443 11123344443433332 234466777888999999
Q ss_pred hhhHHHHHHHhhccCCCC
Q 000911 531 RRAAAAAFQENVGRQGNY 548 (1229)
Q Consensus 531 RRaAsAAfQE~VGR~G~~ 548 (1229)
|.++.-++ |+.|.-
T Consensus 230 r~~~~~~l----~~~~~~ 243 (335)
T COG1413 230 RKAALLAL----GEIGDE 243 (335)
T ss_pred HHHHHHHh----cccCcc
Confidence 99888664 666654
No 105
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.98 E-value=1.6e+03 Score=29.28 Aligned_cols=95 Identities=24% Similarity=0.307 Sum_probs=63.3
Q ss_pred CCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccCCchh
Q 000911 740 DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDE 819 (1229)
Q Consensus 740 ~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~ 819 (1229)
+..+..|.-.+.|.|++-..+--+.+...++++|.. .+.-|+|.-+|+...+||.-+|...
T Consensus 292 ~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~S--------rkSw~aRhTgiri~qqI~~llG~s~----------- 352 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGS--------RKSWEARHTGIRIAQQICELLGRSR----------- 352 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcC--------ccchhhhchhhHHHHHHHHHhCccH-----------
Confidence 334455555555666665555445555667777764 1236889999999999999888652
Q ss_pred hhHhhhhHHHHHHHHHHhccccCCCCCCcchHHHHHHHHhHHHHHH
Q 000911 820 ISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 820 ~~~~~~~~~~v~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~~~ 865 (1229)
...+..++.|+-++|.|=.. .||.-+-.++..+.
T Consensus 353 ----l~hl~~l~~ci~~~l~D~~~--------~vRi~tA~alS~la 386 (975)
T COG5181 353 ----LSHLGPLLKCISKLLKDRSR--------FVRIDTANALSYLA 386 (975)
T ss_pred ----HhhhhhHHHHHHHHhhccce--------eeeehhHhHHHHHH
Confidence 13456788888888887543 67777777776543
No 106
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=25.83 E-value=1e+03 Score=27.06 Aligned_cols=111 Identities=13% Similarity=0.212 Sum_probs=62.1
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhh----cCCC--ch--hhhhHHHHHhhcC--
Q 000911 687 SLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQ----LTDP--NP--AIRRGSALALGVL-- 756 (1229)
Q Consensus 687 ~~~~~l~~~L~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~----l~~~--~~--~~r~G~alaLG~l-- 756 (1229)
.+...|-.+ +|.- .-+++..+|..+|....... .....++...|++. +++. .. .+||+..+.....
T Consensus 100 ~l~~~L~~~-rHrG--Afe~~~~~f~~lc~~l~~~~-~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~ai 175 (255)
T PF10350_consen 100 LLIEQLLEI-RHRG--AFESVYPGFTALCRRLWSSN-NPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAI 175 (255)
T ss_pred HHHHHHHhc-cccc--HHHHHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHH
Confidence 333444333 7774 55778889999999877532 23335566666655 3433 22 6777543332111
Q ss_pred ----ChHhhhhhHHHHHHHHhhhcccCCCCC--CccHHHHHHHHHHHHHHHh
Q 000911 757 ----PYELLANSWRDVLLKLCSCCLIEENPE--DRDTEARVNAVRGLVSVCE 802 (1229)
Q Consensus 757 ----p~~~l~~~~~~il~~L~~~~~~~~~~~--~~d~E~R~~av~sL~~i~~ 802 (1229)
|..- ...+...++.|...++.+.... ...-..|++|+..|..++.
T Consensus 176 L~ae~~~~-~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ 226 (255)
T PF10350_consen 176 LSAEPSNS-RPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFR 226 (255)
T ss_pred HhcCCCcc-hhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHh
Confidence 1100 1335666777776655433211 1113789999999988876
No 107
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.22 E-value=5.5e+02 Score=30.64 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=38.8
Q ss_pred CCchhHHHhhhhhhhhHhhcChh---hHHHHHHHHHhhcC-CCCCCCchhhHHHHHHHHH
Q 000911 396 TDTVVRWSAAKGIGRITSCLTSS---LSEEVFSSVLELFS-PGEGDGSWHGGCLALAELA 451 (1229)
Q Consensus 396 ~dT~VRwsaAKglgrI~~rL~~~---~a~qVv~~vl~~f~-~~~~~~~WHG~cLaLAEL~ 451 (1229)
....+|--||+-++.|+.+.... +...|+..+...|. +...-.+-=|+..+|++|+
T Consensus 280 ~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 280 NHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 34568888999999999887653 66677777777554 3333334458888888775
No 108
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.20 E-value=1.4e+03 Score=29.79 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCC
Q 000911 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLP 458 (1229)
Q Consensus 379 ~e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p 458 (1229)
+.+--.|--.|++.|+.-.-.+|=+|--++|-|+.-.-+. +|+..+++.+..++-.....+ -+|++=.+.--
T Consensus 725 ~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq---dvL~~LlnnLkvqeRq~Rvct-svaI~iVae~c---- 796 (975)
T COG5181 725 VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ---DVLDILLNNLKVQERQQRVCT-SVAISIVAEYC---- 796 (975)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH---HHHHHHHhcchHHHHHhhhhh-hhhhhhhHhhc----
Confidence 4556677778899999888899999999999999988775 789999888876654433222 23333222211
Q ss_pred CCccchHHHHHHhheEeeccccccCCccccchhhHHHHHhhcccCccchHHHHHHHHHHHHHHHhcCCCchhhhhHHHHH
Q 000911 459 SSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAF 538 (1229)
Q Consensus 459 ~~L~~vv~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaRay~~~~l~~~~~~la~~Lv~~a~FDrevniRRaAsAAf 538 (1229)
-.=.|+|.++. |-+.....|-..|=-|-||..= |..+.-+.|+..|- -|+--|+-||+..=|.-|+-..
T Consensus 797 -gpfsVlP~lm~----dY~TPe~nVQnGvLkam~fmFe-----yig~~s~dYvy~it-PlleDAltDrD~vhRqta~nvI 865 (975)
T COG5181 797 -GPFSVLPTLMS----DYETPEANVQNGVLKAMCFMFE-----YIGQASLDYVYSIT-PLLEDALTDRDPVHRQTAMNVI 865 (975)
T ss_pred -CchhhHHHHHh----cccCchhHHHHhHHHHHHHHHH-----HHHHHHHHHHHHhh-HHHHhhhcccchHHHHHHHHHH
Confidence 11235565532 3333344555667777777642 33334455666553 4677899999999998888655
Q ss_pred HHh
Q 000911 539 QEN 541 (1229)
Q Consensus 539 QE~ 541 (1229)
--+
T Consensus 866 ~Hl 868 (975)
T COG5181 866 RHL 868 (975)
T ss_pred HHH
Confidence 433
No 109
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.05 E-value=9.9e+02 Score=31.41 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=85.6
Q ss_pred HHHHhhhhhhhhhhcccCC--chhhHHHHHHHHHHHHhhcCCCCchh---------HHHHHHHHHHhhcCCCchHHHHHH
Q 000911 639 KIVAGIVPGIEKARLYRGK--GGEIMRSAVSRFIECISLSFVSLPEK---------TKRSLLDTLNENLRHPNSQIQNAA 707 (1229)
Q Consensus 639 ~~i~~i~~~~~~~~l~rg~--ggel~r~A~c~lI~~ls~s~~pl~~~---------~~~~~~~~l~~~L~~~~~~i~~aA 707 (1229)
+.+-+++-.+.+.-+|||. ..-.+|..+..+.- .-+|+.+. +++.=...+..-|+.+-+.|+..|
T Consensus 165 qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~----~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a 240 (1005)
T KOG1949|consen 165 QGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFV----EAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTA 240 (1005)
T ss_pred hhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHH----HhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 4455666677777888884 34567776666553 34566421 333444456667899999999999
Q ss_pred HHHHHHHHHHhhccCCcchhhhhHHHHHhhcC-CCchhhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCcc
Q 000911 708 VKALKPFVQTYMVAADSGVVGGISLKYMEQLT-DPNPAIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRD 786 (1229)
Q Consensus 708 ~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~-~~~~~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d 786 (1229)
.+.+...+..|.---|.....+++.+.++.+. +.-...|....- .+|..+..+.-..+++.+..+.+..- .+.-
T Consensus 241 ~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~---gl~~~l~np~sh~~le~~Lpal~~~l--~D~s 315 (1005)
T KOG1949|consen 241 ILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFK---GLPMILDNPLSHPLLEQLLPALRYSL--HDNS 315 (1005)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhc---CcHHHHcCccchhHHHHHHHhcchhh--hccc
Confidence 88888777777654454444666666676664 444455654333 34544443322222332222211110 1122
Q ss_pred HHHHHHHHHHHHH
Q 000911 787 TEARVNAVRGLVS 799 (1229)
Q Consensus 787 ~E~R~~av~sL~~ 799 (1229)
.-.|+++++-|..
T Consensus 316 e~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 316 EKVRVAFVDMLLK 328 (1005)
T ss_pred hhHHHHHHHHHHH
Confidence 3456776665554
No 110
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=24.85 E-value=4e+02 Score=33.66 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=60.5
Q ss_pred HHHHHHHHhccccc-------CChhHHHHHHhhhhhhhhhhcccCCchhhHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 000911 619 AGEVVLALCKYDYA-------LPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDT 691 (1229)
Q Consensus 619 laei~~al~~~~~~-------~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~ 691 (1229)
|-+|+.-|.+.... .+....+.-..|+..++|..+| +.+++-.|++.+. -.+|...+.+.+.+..
T Consensus 68 c~~i~~iL~~te~~skn~fG~yss~rmk~W~~Iv~~yeK~n~~-------L~E~a~~L~r~v~-YeIP~lkKqi~k~~q~ 139 (507)
T PF05600_consen 68 CKRIVEILKQTEADSKNIFGRYSSQRMKDWQEIVKLYEKDNLY-------LAEAAQILVRNVN-YEIPALKKQIAKCQQQ 139 (507)
T ss_pred HHHHHHHHhCCCccccceeccccchhHHHHHHHHHHHHhccch-------HHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence 45666666543221 1455567777888888887776 7788888887765 4578888888999999
Q ss_pred HHhhcCCCchHHHHHHHHH---HHHHHHHh
Q 000911 692 LNENLRHPNSQIQNAAVKA---LKPFVQTY 718 (1229)
Q Consensus 692 l~~~L~~~~~~i~~aA~~A---l~~l~~~y 718 (1229)
+.++-+ ...+.+.++..+ +...|..|
T Consensus 140 ~~d~~k-k~~e~~~~~~~~~~~~~~~c~~l 168 (507)
T PF05600_consen 140 LEDLDK-KEEELQRSAAEARERYKKACKQL 168 (507)
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999844 445555444444 34445554
No 111
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=24.59 E-value=8.3e+02 Score=25.60 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=91.5
Q ss_pred ccchHHHHHHHHHHHHhccccccchhcchHHHHHHHHHHHHHHhhcCCCceeccHHHHHHHHHhccccccccCCchhHHH
Q 000911 995 QESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCA 1074 (1229)
Q Consensus 995 teslvk~S~~aL~~yl~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~Ll~~g~f~~~~~~~~~~~~ 1074 (1229)
+++.+......|..... + .++....+ ++.+-+....+-..+|+.-.+...+.... +.|..
T Consensus 12 s~~n~~~~~~~l~~~~~-----~---~~~~~~~l----~~~i~~~~~~~~~~~~~ya~L~~~l~~~~--------~~f~~ 71 (200)
T smart00543 12 SPSNFESIIKELLKLNN-----S---DKNLRKYI----LELIFEKAVEEPNFIPAYARLCALLNAKN--------PDFGS 71 (200)
T ss_pred CHHHHHHHHHHHHHHHc-----c---CHHHHHHH----HHHHHHHHHcCcchHHHHHHHHHHHHHHH--------HHHHH
Confidence 45566666666665553 1 22233333 33333333334467777777777776532 16677
Q ss_pred HHHHHHHHHHHc------cCChHHHHHHHHHHHHhhcC---CchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHhcC
Q 000911 1075 GVLDSLAVELKA------TKDFSKLYAGIAILGYIASV---SDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNG 1145 (1229)
Q Consensus 1075 ~l~~l~~~e~~~------sk~v~kL~~~i~v~~~l~~~---~~~~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll~~~ 1145 (1229)
.++..++++..+ ..+..+....++.+|.|..+ +...-.+.+..++..+..+.+.-.-...+.+...|...|
T Consensus 72 ~ll~~~~~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G 151 (200)
T smart00543 72 LLLERLQEEFEKGLESEEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCG 151 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhh
Confidence 777777766443 45667888899999998764 334555566666666666665533456666666666655
Q ss_pred CC----cchhhHHHHHhhhhhcCCCC
Q 000911 1146 NI----LEEDKTEKALEIIGETCWEG 1167 (1229)
Q Consensus 1146 d~----~~~e~~d~~~~~L~~tdW~~ 1167 (1229)
.. -.++.+++.++.+...-+..
T Consensus 152 ~~l~~~~~~~~~~~~l~~l~~~~~~~ 177 (200)
T smart00543 152 KDLEREKSPKLLDEILERLQDYLLKK 177 (200)
T ss_pred HHHcCcccHHHHHHHHHHHHHHHhcc
Confidence 33 23455677777777766654
No 112
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.97 E-value=1.7e+03 Score=29.72 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHhcCCCcchhhHHHHHhhhhhc
Q 000911 1109 PISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALEIIGET 1163 (1229)
Q Consensus 1109 ~~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll~~~d~~~~e~~d~~~~~L~~t 1163 (1229)
....+=+.-++-+|-||=+-||+-|-|-+|.. +++..|. .-..|.++.|...
T Consensus 346 ~avqrHr~tIleCL~DpD~SIkrralELs~~l--vn~~Nv~-~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 346 TAVQRHRSTILECLKDPDVSIKRRALELSYAL--VNESNVR-VMVKELLEFLESS 397 (866)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--hccccHH-HHHHHHHHHHHhc
Confidence 34444445567788888888999999888875 4443332 2235677777665
No 113
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.87 E-value=1.9e+03 Score=29.16 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccCCCCCCcchHHHhhhcCCCcccCcCCCCChhHHHhhhcCch
Q 000911 898 FDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRILYNKTIFVPIPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFS 977 (1229)
Q Consensus 898 ~~~~~~~~l~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~pip~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~ 977 (1229)
+.|++..++-.-++-.-.--=-=+|.+|--++.++.-. |.+.|. .+||+++.=|+-|
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLk--------YPeAlr---------------~~FprL~EkLeDp 193 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLK--------YPEALR---------------PCFPRLVEKLEDP 193 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh--------hhHhHh---------------hhHHHHHHhccCC
Confidence 34555555544444444434445666666666665422 122221 3688888777654
Q ss_pred hhHHHHhhcceeecccCccchHHHHHHHHHHHHhccccccchhcchHHHHHHHHHHHHHHhhcCCCceeccHHHHHHH
Q 000911 978 CYSRVLLSGLVISIGGLQESLRKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIES 1055 (1229)
Q Consensus 978 ~y~~~ll~GLv~S~Gglteslvk~S~~aL~~yl~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~ 1055 (1229)
. -+++.+|-.-+++--+ . +|...-.++-.+..++-+ ..|+=|.+=++|.+..
T Consensus 194 D-----------------p~V~SAAV~VICELAr-----K---nPknyL~LAP~ffklltt-SsNNWmLIKiiKLF~a 245 (877)
T KOG1059|consen 194 D-----------------PSVVSAAVSVICELAR-----K---NPQNYLQLAPLFYKLLVT-SSNNWVLIKLLKLFAA 245 (877)
T ss_pred C-----------------chHHHHHHHHHHHHHh-----h---CCcccccccHHHHHHHhc-cCCCeehHHHHHHHhh
Confidence 2 2344455555555444 2 344433444445555543 3455566666664443
No 114
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=22.09 E-value=7.2e+02 Score=24.01 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhcC-CchhhHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHhcC
Q 000911 201 RILGFCKDYLSNA-GPMRTIAGLLLAKLLTRPD-MPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGG 276 (1229)
Q Consensus 201 rIl~l~~~yL~~~-~k~r~aAa~LLsrl~tR~D-~~~~l~~fl~w~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~g~ 276 (1229)
..++.+..+|.+| -+.|--+=.+|.+++.+++ .....+..+.-.++.+... + +|........|+.+.-.-+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~-D----syVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDE-D----SYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCC-C----chHHHHHHHHHHHHHHHCh
Confidence 5678889999888 5778888888999999888 4433666677666666533 2 3555567777766654333
No 115
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.99 E-value=2e+03 Score=29.13 Aligned_cols=361 Identities=19% Similarity=0.197 Sum_probs=176.9
Q ss_pred cCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCCCCCCCccchHHHHHHhh
Q 000911 393 LRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKVVPVIVKAL 472 (1229)
Q Consensus 393 L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll~p~~L~~vv~~v~~aL 472 (1229)
|++.|..||=.|+=..-|+..+-|. +.+-.+..-..++... +.+..+|+.=.+-|+|.++.=.-++..+++|-+++-|
T Consensus 151 l~~~~~~irKKA~Lca~r~irK~P~-l~e~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iL 228 (866)
T KOG1062|consen 151 LQHRDPYIRKKAALCAVRFIRKVPD-LVEHFVIAFRKLLCEK-HHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKIL 228 (866)
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCch-HHHHhhHHHHHHHhhc-CCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999873 3344444444444332 3444444555567888875322223444554444333
Q ss_pred e----------Eeecccc------------ccCCccccchhhHHHHHhhcccCccchH---------------------H
Q 000911 473 H----------YDIRRGS------------HSVGSHVRDAAAYVCWAFGRAYCHTDMR---------------------N 509 (1229)
Q Consensus 473 ~----------fd~rrg~------------~SvGs~VRDAACyv~WAlaRay~~~~l~---------------------~ 509 (1229)
. ||+-..+ ...|.+.-||+--++=-+|+-.+..+.. +
T Consensus 229 k~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~ 308 (866)
T KOG1062|consen 229 KQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS 308 (866)
T ss_pred HHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCc
Confidence 2 2221111 1368888888776666665554422211 2
Q ss_pred HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHh-------hccCCCCCCCccceeeeceeecccchhhHHHHHHHHhcccc
Q 000911 510 ILEQIAPHLLTVACYDREVNCRRAAAAAFQEN-------VGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEG 582 (1229)
Q Consensus 510 ~~~~la~~Lv~~a~FDrevniRRaAsAAfQE~-------VGR~G~~phGI~Iv~~~DyfaV~~r~~ayl~va~~vA~~~~ 582 (1229)
=+..+|.+.+---+-.|+-|+|--|--++==. |-|| --.|+...+==-++.|++|+ +.+-.+-. +.
T Consensus 309 ~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrral-ELs~~lvn-~~ 381 (866)
T KOG1062|consen 309 GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRAL-ELSYALVN-ES 381 (866)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHH-HHHHHHhc-cc
Confidence 33445555555556666666665443332111 1122 11233333323456666663 34333321 12
Q ss_pred ChHHHHHHHhhcccchhccCCcCCCChhHHHHHHHHHHHHHHHHhcccccCChh-HHHHHHhhhhhhhhhhcccCCchhh
Q 000911 583 YLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPAD-KQKIVAGIVPGIEKARLYRGKGGEI 661 (1229)
Q Consensus 583 Y~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~-~~~~i~~i~~~~~~~~l~rg~ggel 661 (1229)
--..|++.|+. ...+.|-+.+--..-.+++++..|.. ++. .++.+..++. -+|.+
T Consensus 382 Nv~~mv~eLl~---------fL~~~d~~~k~~~as~I~~laEkfaP-----~k~W~idtml~Vl~----------~aG~~ 437 (866)
T KOG1062|consen 382 NVRVMVKELLE---------FLESSDEDFKADIASKIAELAEKFAP-----DKRWHIDTMLKVLK----------TAGDF 437 (866)
T ss_pred cHHHHHHHHHH---------HHHhccHHHHHHHHHHHHHHHHhcCC-----cchhHHHHHHHHHH----------hcccc
Confidence 23445555553 22234667777777777787777632 111 1222222211 24777
Q ss_pred HHHH-HHHHHHHHhhcCCCCchh-HHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHhhcc----CCcc-hhhhhHHH
Q 000911 662 MRSA-VSRFIECISLSFVSLPEK-TKRSLLDTLNENLR-HPNSQIQNAAVKALKPFVQTYMVA----ADSG-VVGGISLK 733 (1229)
Q Consensus 662 ~r~A-~c~lI~~ls~s~~pl~~~-~~~~~~~~l~~~L~-~~~~~i~~aA~~Al~~l~~~y~~~----~~~~-~~~~ii~~ 733 (1229)
|+.- +..||+-|+.+.-+..+. +..-|..+..+.+. -..+.+...|+=++.+.-...... ++.. ..++++..
T Consensus 438 V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~ 517 (866)
T KOG1062|consen 438 VNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDK 517 (866)
T ss_pred cchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHH
Confidence 7764 446777777554444444 44555555554332 223334444444444332221111 0001 11566666
Q ss_pred HHhhcC-CCchhhhhHHHHH-hhcCChHhhh--hhHHHHHHHHhhhcccCCCCCCccHHHHHHHHH
Q 000911 734 YMEQLT-DPNPAIRRGSALA-LGVLPYELLA--NSWRDVLLKLCSCCLIEENPEDRDTEARVNAVR 795 (1229)
Q Consensus 734 ~~~~l~-~~~~~~r~G~ala-LG~lp~~~l~--~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~ 795 (1229)
+.+-+. ...-.+.+||++. |--+..++.. ++.++++.... ...|.|-++-|++
T Consensus 518 l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~---------~s~~~elQQRa~E 574 (866)
T KOG1062|consen 518 LEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYK---------SSLDTELQQRAVE 574 (866)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhc---------ccccHHHHHHHHH
Confidence 666554 2222567777664 2223333322 23333333221 3345677766665
No 116
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=21.92 E-value=1.3e+03 Score=28.66 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=34.0
Q ss_pred hhhhHHHHHhhcCChHhhhhhHHHHHHHHhhhcccCCCCCCccHHHHHHHHHHHHHHHhh
Q 000911 744 AIRRGSALALGVLPYELLANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCET 803 (1229)
Q Consensus 744 ~~r~G~alaLG~lp~~~l~~~~~~il~~L~~~~~~~~~~~~~d~E~R~~av~sL~~i~~t 803 (1229)
+.-.|...++|.+|. ++..|+..|++..+.++. .+-..-+-.+|+.+++.
T Consensus 294 Aa~A~A~v~l~~lP~-----KLnPiIrpLMdSIK~Een-----~~LQ~rsA~slA~Li~~ 343 (441)
T PF12054_consen 294 AAAASALVALGGLPK-----KLNPIIRPLMDSIKREEN-----ELLQQRSAESLARLIQL 343 (441)
T ss_pred HHHHHHHHHhccCCC-----CccHHHHHHHHHhhcccc-----HHHHHHHHHHHHHHHHH
Confidence 345577788899984 356688888888765543 56666667777776543
No 117
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=21.68 E-value=4.6e+02 Score=30.82 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=41.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhccCCcchhhhhHHHHHhhcCCCchhhhhHHHHHhhcCCh
Q 000911 697 RHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPY 758 (1229)
Q Consensus 697 ~~~~~~i~~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~alaLG~lp~ 758 (1229)
+..+|....++.+|+..-+..+ ..+..+.+++.+.+++++..+..|+++..++|...+
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 4456776766666664433322 122237889999999998888899999999998765
No 118
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=20.73 E-value=1.3e+02 Score=41.27 Aligned_cols=106 Identities=24% Similarity=0.159 Sum_probs=64.1
Q ss_pred HHHHhccCCCCchhHHHhhhhhhhhHhhcChhhHHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHhcCC-CCCCCccchH
Q 000911 387 EILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL-LLPSSLPKVV 465 (1229)
Q Consensus 387 ~~LL~~L~d~dT~VRwsaAKglgrI~~rL~~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgl-l~p~~L~~vv 465 (1229)
..++..++..++.||+++|+.||-....-..|.-.-|++.++-++...++-..=.|+-..+..|.+-+- -++...+-+|
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv 898 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLV 898 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeeh
Confidence 455666789999999999999999887776666566666666555544333333455555555554322 2344555555
Q ss_pred HHHHHhheEeeccccccCCccccchhhHHHHHhhc
Q 000911 466 PVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGR 500 (1229)
Q Consensus 466 ~~v~~aL~fd~rrg~~SvGs~VRDAACyv~WAlaR 500 (1229)
|.+. |+.. -.-..||+||.=+.=++-+
T Consensus 899 ~pll-------r~ms-d~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 899 VPLL-------RRMS-DQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred hhhh-------cccc-cchHHHHHHHHHHHHHHhc
Confidence 4442 3332 2235689998754433333
Done!