Query 000911
Match_columns 1229
No_of_seqs 203 out of 288
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 16:19:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000911.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_680-684//hhsearch_pdb/000911hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 1.0 1 1 124.2 66.0 482 155-718 146-681 (1230)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 121.9 40.1 616 382-1185 213-852 (852)
3 2bpt_A Importin beta-1 subunit 1.0 1 1 108.7 50.2 226 608-865 382-626 (861)
4 1qgr_A Protein (importin beta 1.0 1 1 107.3 46.7 270 607-935 378-680 (876)
5 1b3u_A Protein (protein phosph 1.0 1 1 106.0 37.1 20 523-542 173-192 (588)
6 4fdd_A Transportin-1; heat rep 1.0 1 1 103.5 40.9 380 379-841 85-495 (852)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 102.3 43.2 411 380-865 91-528 (861)
8 1b3u_A Protein (protein phosph 1.0 1 1 100.7 33.3 413 386-933 12-430 (588)
9 1u6g_C TIP120 protein, CAND1; 1.0 1 1 99.8 52.8 485 155-756 60-596 (1230)
10 1qgr_A Protein (importin beta 1.0 1 1 98.3 41.5 149 381-543 318-479 (876)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=124.20 Aligned_cols=482 Identities=13% Similarity=0.119 Sum_probs=251.7
Q ss_pred CHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCC
Q ss_conf 3157899-9999999785159889877886544556899998258999999999862119-9533489999998724899
Q 000911 155 GEMEAKC-VILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNA-GPMRTIAGLLLAKLLTRPD 232 (1229)
Q Consensus 155 ~~We~rY-vLLLWLS~Lvl~PFdLs~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~-~k~r~~Aa~LLarl~tR~D 232 (1229)
..|+.|. .+-.|-.++-..|=.+. +....++......+..+ ...|..|...++.+.....
T Consensus 146 ~~~~~~~~al~~l~~~~~~~~~~l~------------------~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 146 EDVSVQLEALDIMADMLSRQGGLLV------------------NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCSSCT------------------TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8467999999999999998276778------------------8799999999998759968999999999999998568
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 68879999999998514565443202777789999999998248234444358999965532014878871469999989
Q 000911 233 MPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPLLRKYLMK 312 (1229)
Q Consensus 233 ~~~~l~~fl~w~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~g~r~~l~~~~~~i~~~~~~l~~s~~~~~~~l~rKl~iK 312 (1229)
-. .++.++.+....+....+.. .+. +.+.++..+.+.... .+.+|++.+++......... +.-+|.....
T Consensus 208 ~~-~~~~~l~~l~~~L~~~~~~~---~r~-~a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~----~~~vR~~a~~ 277 (1230)
T 1u6g_C 208 NI-VFVDLIEHLLSELSKNDSMS---TTR-TYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVD----DDELREYCIQ 277 (1230)
T ss_dssp ----CTTHHHHHHHHHHHTCSSC---SCT-THHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSC----CTTTHHHHHH
T ss_pred HH-HHHHHHHHHHHHHCCCCCHH---HHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCC----CHHHHHHHHH
T ss_conf 99-99999999999861677556---899-999999999998689-89988999999999986689----7789999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC-CCCCCCCCC-CCC--CCCCCC--CCCCCCCCC--CC------
Q ss_conf 99997311467776443210125-5201111111000-001335765-544--322123--679999999--99------
Q 000911 313 LTQRLGLTCLPRCTSAWRYVIRT-SSLGENMSSRAAF-REIDQCDHS-VVD--SLKSEQ--NRNCPEDEG--MD------ 377 (1229)
Q Consensus 313 l~qrl~l~~L~pr~a~WrY~rg~-rsL~~nl~~~~~~-~~~~~~~~~-~~~--~~~~~~--~~~~~~~ed--~d------ 377 (1229)
.+..+...+ +..... |-... ..+...+...... ...+....+ ... ..+... .+...++++ +.
T Consensus 278 ~l~~l~~~~-~~~~~~--~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~ 354 (1230)
T 1u6g_C 278 AFESFVRRC-PKEVYP--HVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAA 354 (1230)
T ss_dssp HHHHHHHCT-TCCCHH--HHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHH
T ss_pred HHHHHHHHC-HHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999978-487777--68999999999827899888764411011223344653011001366645556779999999
Q ss_pred -------------CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCH----------------------HHHHH
Q ss_conf -------------3278999999998225899960688743336466721182----------------------35777
Q 000911 378 -------------VPDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTS----------------------SLSEE 422 (1229)
Q Consensus 378 -------------vpe~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rLp~----------------------~~a~q 422 (1229)
+.+.++.++..++..++|.+..||.++.+.++.+...+.. .+-.+
T Consensus 355 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (1230)
T 1u6g_C 355 KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN 434 (1230)
T ss_dssp HHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999997466679999999989999871798657999999999999997242434346752013564559999987469
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 999999604999999722359989999995399-9999700069999774057520254568962100145899874103
Q 000911 423 VFSSVLELFSPGEGDGSWHGGCLALAELARRGL-LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRA 501 (1229)
Q Consensus 423 Vv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgl-llp~~L~~vv~~i~~aL~fd~rrg~~SvGs~VRDAACyv~WAlARa 501 (1229)
++..++..+... ++..-+++|.+|++++...- .+...++.++|.+...|.-... ...||.++|-.+=++...
T Consensus 435 ll~~l~~~l~~~-~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~------~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 435 IVKALHKQMKEK-SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS------SSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSS------CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC------CCHHHHHHHHHHHHHHHH
T ss_conf 999999986137-7879999999999999976110577799999999999748788------516899999999999983
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 68100389999999989888724777235654789989860257897788532020200111200033799989985102
Q 000911 502 YCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYE 581 (1229)
Q Consensus 502 y~~~~l~~~~~~La~~Lv~~alFDrevniRRaAsAAfQE~VGR~G~~phGI~Iv~~~DyfsV~~r~~ayl~va~~vA~~~ 581 (1229)
..++.+.||+..+...|+. .+-|+...+|..|-.++.+++.-.|... .+ .-..+.
T Consensus 508 ~~~~~~~~~l~~llp~L~~-~l~d~~~~v~~~al~~l~~l~~~~~~~~------------------~~------~~~~~~ 562 (1230)
T 1u6g_C 508 HSPQVFHPHVQALVPPVVA-CVGDPFYKITSEALLVTQQLVKVIRPLD------------------QP------SSFDAT 562 (1230)
T ss_dssp SCGGGGHHHHTTTHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHCCSS------------------SC------CCCCCH
T ss_pred CCHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHCCCC------------------CC------CCCCHH
T ss_conf 8988788679999999999-9714246899999999999998716755------------------56------532327
Q ss_pred CCHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 67288899885243102014886787854887899999999999840134699348999981324554421026775356
Q 000911 582 GYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEI 661 (1229)
Q Consensus 582 ~Y~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel 661 (1229)
.|...++..++. |+- ..+.+...|..++-+++.++..... .+.+ .+..+++.+.+ . ...|.
T Consensus 563 ~~~~~ll~~ll~-----~l~--~~d~~~~vr~~a~~~lg~L~~~~g~---~~~~----~~~~~l~~L~~-~----l~~e~ 623 (1230)
T 1u6g_C 563 PYIKDLFTCTIK-----RLK--AADIDQEVKERAISCMGQIICNLGD---NLGS----DLPNTLQIFLE-R----LKNEI 623 (1230)
T ss_dssp HHHHHHHHHHHH-----HHS--CSSSCHHHHHHHHHHHHHHHHHTGG---GCCT----HHHHHHHHHHH-H----TTSSS
T ss_pred HHHHHHHHHHHH-----HHH--CCCCCHHHHHHHHHHHHHHHHHHCC---HHHH----HHHHHHHHHHH-H----HCCCH
T ss_conf 899999999999-----873--2699889999999999999998270---3244----38899999998-8----44530
Q ss_pred HHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999740188885-5679999999996519996689999999999999995
Q 000911 662 MRSAVSRFIECISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTY 718 (1229)
Q Consensus 662 ~r~A~c~lI~~ls~s~~pl~-~~~~~~~~~~l~~~L~~~~~~iq~aA~~Al~~l~~~y 718 (1229)
.|.++++.+..++.+..+.. ..........+...++..+..++..|.+++..++..+
T Consensus 624 ~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 624 TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 5999999999998185644368889999999999998678889999999999999604
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=121.89 Aligned_cols=616 Identities=14% Similarity=0.100 Sum_probs=292.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC---
Q ss_conf 99999999822589996068874333646672118235---777999999604999999722359989999995399---
Q 000911 382 LEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSL---SEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL--- 455 (1229)
Q Consensus 382 vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rLp~~~---a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgl--- 455 (1229)
+.+++..++..+.|.|..||-.+.+.+++++..-|..+ -++++..++..+... ++..-+-+|-++..++....
T Consensus 213 ~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~ 291 (852)
T 4fdd_A 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKD 291 (852)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999999987179977899999999999998577989988999999999870699-68999999999999860365798
Q ss_pred CCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99997000699997740575202545689621001458998741036810038999999998988872477723565478
Q 000911 456 LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAA 535 (1229)
Q Consensus 456 llp~~L~~vv~~i~~aL~fd~rrg~~SvGs~VRDAACyv~WAlARay~~~~l~~~~~~La~~Lv~~alFDrevniRRaAs 535 (1229)
..+..++.++|.+.+.+.|.... .-|.=. ++++- +..+. .+.+-++|++|.
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d---------------~~~~~~---d~~ed-~~~dd----------~~~~~~vr~~a~ 342 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDID---------------IILLKG---DVEGG-SGGDD----------TISDWNLRKCSA 342 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHH---------------HHHHHC--------------------------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHH---------------HHHHCC---CCCCC-CCCCC----------CCCCCHHHHHHH
T ss_conf 87888988999999875786767---------------998669---84432-22456----------401116999999
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHH
Q ss_conf 99898602578977885320202001112000337999899851026728889988524310201488678785488789
Q 000911 536 AAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGA 615 (1229)
Q Consensus 536 AAfQE~VGR~G~~phGI~Iv~~~DyfsV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGa 615 (1229)
.++..+.--.|. .....++..+.. ...+.+...|+++
T Consensus 343 ~~L~~la~~~~~----------------------------------~~~~~l~~~l~~---------~l~~~~~~~R~aa 379 (852)
T 4fdd_A 343 AALDVLANVYRD----------------------------------ELLPHILPLLKE---------LLFHHEWVVKESG 379 (852)
T ss_dssp HHHHHHHHHHGG----------------------------------GGHHHHHHHHHH---------HHTCSSHHHHHHH
T ss_pred HHHHHHHHHCCH----------------------------------HHHHHHHHHHHH---------HHCCCCHHHHHHH
T ss_conf 999999874618----------------------------------789999999999---------8559988999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH
Q ss_conf 9999999999840134699348999981324554421026775356999999999997401888-855679999999996
Q 000911 616 TLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVS-LPEKTKRSLLDTLNE 694 (1229)
Q Consensus 616 lLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~p-l~~~~~~~~~~~l~~ 694 (1229)
+.+++.+..+... .....+..+++.+.+ ..+. ....+|.++|..+..++...-+ ............+-.
T Consensus 380 ~~alg~i~~~~~~-------~~~~~l~~~l~~l~~--~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~ 449 (852)
T 4fdd_A 380 ILVLGAIAEGCMQ-------GMIPYLPELIPHLIQ--CLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449 (852)
T ss_dssp HHHHHHTTTTTHH-------HHGGGHHHHHHHHHH--HTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCHH-------HHHHHHHHHHHHHHH--HCCC-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999863568-------899879999999998--7179-98899999999999999886110478999999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH----HH-HHHHHHHH
Q ss_conf 51999668999999999999999510178612554699999660899500133799973028867----64-31299999
Q 000911 695 NLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYE----LL-ANSWRDVL 769 (1229)
Q Consensus 695 ~L~~~~~~iq~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~a~aLG~lp~~----ll-~~~~~~il 769 (1229)
.+...+..+|.+|+.|+..++...-... ......++..++..+++.+.....-..-++|.+-.. +. ...+..++
T Consensus 450 ~L~d~~~~vr~~a~~aL~~l~~~~~~~l-~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~ 528 (852)
T 4fdd_A 450 RILDSNKRVQEAACSAFATLEEEACTEL-VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 528 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9858988899999999999999736766-767999999999999883747999999999999997424313678999988
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--------C-
Q ss_conf 9995510367998874489999999997998754135666543457840356766429999999997341--------4-
Q 000911 770 LKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALD--------D- 840 (1229)
Q Consensus 770 ~~L~~~~~~~~~~~~~daE~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~--------D- 840 (1229)
..|...-..-. +.+.+.| .+++++..++..+|..-.| .....+..+++.+-..+. +
T Consensus 529 p~l~~~~~~l~---d~~~~~~-~~~~~l~~i~~~~g~~~~~-----------~~~~i~~~~~~~l~~~l~~~~~~~~~~~ 593 (852)
T 4fdd_A 529 PPLIQKWNMLK---DEDKDLF-PLLECLSSVATALQSGFLP-----------YCEPVYQRCVNLVQKTLAQAMLNNAQPD 593 (852)
T ss_dssp HHHHHHHHHSC---TTCTTHH-HHHHHHHHHHHHHGGGGHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCC---CCCHHHH-HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999987333---0469999-9999999999997486798-----------8999999999999999999987533886
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 67878874047999999867999998831257899999986534569998652111269787-99999999999645459
Q 000911 841 YSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANL-ATNLVAGIVKQAVEKMD 919 (1229)
Q Consensus 841 YT~D~RGDVGSwVReaam~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~llrqa~EKiD 919 (1229)
+.... |. -+|..++..+..+...+. .-+.+.. ...++..+++..-.+-.
T Consensus 594 ~~~~~--d~--~~~~~~l~~l~~l~~~l~--------------------------~~~~~~~~~~~~~~~l~~~l~~~~~ 643 (852)
T 4fdd_A 594 QYEAP--DK--DFMIVALDLLSGLAEGLG--------------------------GNIEQLVARSNILTLMYQCMQDKMP 643 (852)
T ss_dssp TSCCC--CT--HHHHHHHHHHHHHHHHHG--------------------------GGGHHHHHTCCHHHHHHHHTTCSSH
T ss_pred CCCCC--CC--HHHHHHHHHHHHHHHHHH--------------------------HHHHHHHCCCCHHHHHHHHHCCCCH
T ss_conf 66887--61--199999999978999874--------------------------7699883677189999998389984
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCCH
Q ss_conf 9999999999998411687778-762688764248986667678777257884202904659987541214124571006
Q 000911 920 KLREAAAKVLRRILYNKTIFVP-IPHREKLEEIVPNEADLNWGVPAFSYPRFVHLLRFSCYSRVLLSGLVISIGGLQESL 998 (1229)
Q Consensus 920 rvR~~A~~~l~~ll~~~~~~~p-ip~~~~L~~i~~~~~~~~w~~~~~~fp~~~~LL~~~~y~~~vl~GLv~S~Ggltesl 998 (1229)
.+|..|..++..+.... + .. .||... ..|.+.+.|..+ .-++
T Consensus 644 ~vr~~a~~~l~~l~~~~-~-~~~~~~l~~------------------~lp~l~~~l~~~-----------------~~~v 686 (852)
T 4fdd_A 644 EVRQSSFALLGDLTKAC-F-QHVKPCIAD------------------FMPILGTNLNPE-----------------FISV 686 (852)
T ss_dssp HHHHHHHHHHHHHHHHC-G-GGTGGGHHH------------------HHHHHHHTCCTT-----------------SHHH
T ss_pred HHHHHHHHHHHHHHHHH-H-HHHHHHHHH------------------HHHHHHHHCCCC-----------------CHHH
T ss_conf 49999999999999981-6-888987999------------------999999876942-----------------0689
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999999860556420002058999999999999751389913501899999998121112356773337999999
Q 000911 999 RKASISALLEYLQAGETEDLDARSSREYMLYNDILWVLQHYRRCDRVIVPTLKTIESLFSKRIFLNMEVHTPIFCAGVLD 1078 (1229)
Q Consensus 999 vk~S~~aL~~yl~~~~~~~~~~~~~~l~~~~~~ll~il~~~~~~dRv~vP~L~tl~~Ll~~g~f~~~~~~~~~f~~~l~~ 1078 (1229)
.+.+..++-++....+ . +-..-...+...|+.++++......+.--+..++..|...+ .+... ++...+..
T Consensus 687 ~~~a~~alg~i~~~~~--~--~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~-~~~~~----~~l~~~~~ 757 (852)
T 4fdd_A 687 CNNATWAIGEISIQMG--I--EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEVA----PMLQQFIR 757 (852)
T ss_dssp HHHHHHHHHHHHHHHG--G--GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC-HHHHG----GGHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-HHHHC----CCHHHHHH
T ss_conf 9999999999999711--7--67878999999999985799887207788999999999868-89767----55899999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999970699688998999978762278126899999999983699814439999999999982288863223899996
Q 000911 1079 SLAVELKATKDFSKLYAGIAILGYIASVSDPISTRAFSYLLNFLGHRFPKIRKASAEQVYLVLLQNGNILEEDKTEKALE 1158 (1229)
Q Consensus 1079 l~~~e~~~~k~v~kL~~~i~v~~~l~~~~~~~~~~a~~~L~~lL~H~~PkVR~~~Ae~lY~~Ll~~~~~~~~e~~d~~~~ 1158 (1229)
...+.+.+.+|...-..+++-+|.+++.........+...+...+ .|...+.-..+.++..|..+. +
T Consensus 758 ~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~------------~ 824 (852)
T 4fdd_A 758 PWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVA-SWINPKDDLRDMFCKILHGFK------------N 824 (852)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHH------------H
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH------------H
T ss_conf 999986536660799999999999998691868888999999987-068997899999999999998------------7
Q ss_pred HHHHCCCCCCHHH-HHHHHHHHHHHHCC
Q ss_conf 2210478986267-69999999988299
Q 000911 1159 IIGETCWEGDMNV-VKHQRLELYNLAGV 1185 (1229)
Q Consensus 1159 ~L~~tdW~~~~~~-~r~~r~~l~~l~gv 1185 (1229)
.+.+..|+.-... --+.|.+|....||
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 852 (852)
T 4fdd_A 825 QVGDENWRRFSDQFPLPLKERLAAFYGV 852 (852)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHHTSCC
T ss_pred HCCCHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf 6772019999872999999999987096
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=108.73 Aligned_cols=226 Identities=13% Similarity=0.135 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC-C-CHHHH
Q ss_conf 854887899999999999840134699348999981324554421026775356999999999997401888-8-55679
Q 000911 608 DLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVS-L-PEKTK 685 (1229)
Q Consensus 608 dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~p-l-~~~~~ 685 (1229)
+...|++++.+++.+..+.. .......+..+++.+.+. .+. ....+|.+++..+..++...-+ + .....
T Consensus 382 ~~~~r~~a~~~l~~i~~~~~------~~~~~~~l~~il~~l~~~--l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 452 (861)
T 2bpt_A 382 NWRNREAAVMAFGSIMDGPD------KVQRTYYVHQALPSILNL--MND-QSLQVKETTAWCIGRIADSVAESIDPQQHL 452 (861)
T ss_dssp SHHHHHHHHHHHHHTSSSSC------HHHHHHHHHHHHHHHHHG--GGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred CHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHH--CCC-CCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 72699999999999985998------788899899999999988--289-959999999999999998735404878889
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHCCCHHH
Q ss_conf 99999999651999668999999999999999510--17-86125546999996608--995001337999730288676
Q 000911 686 RSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMV--AA-DSGVVGGISLKYMEQLT--DPNPAIRRGSALALGVLPYEL 760 (1229)
Q Consensus 686 ~~~~~~l~~~L~~~~~~iq~aA~~Al~~l~~~y~~--~~-~~~~~~~ii~~~~~~l~--~~~~~~r~G~a~aLG~lp~~l 760 (1229)
......+-..+... ..++.+|+.|+..++..... .. -......++...+..+. +.+...|.....++|.+-...
T Consensus 453 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 453 PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999976447-28999999999999986231354246899999999999998575861589999999999999976
Q ss_pred ---HHHHHHH----HHHHHHHHCCCC----C-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ---4312999----999995510367----9-988744899999999979987541356665434578403567664299
Q 000911 761 ---LANSWRD----VLLKLCSCCLIE----E-NPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKN 828 (1229)
Q Consensus 761 ---l~~~~~~----il~~L~~~~~~~----~-~~~~~daE~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1229)
..+.+.. +++.|....... . .......+.|..++.+|..++..+|.. ......
T Consensus 532 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---------------~~~~~~ 596 (861)
T 2bpt_A 532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS---------------VEPVAD 596 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG---------------TGGGHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
T ss_conf 26569999999999999999887532013885567779999999999999999985563---------------478999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999734146787887404799999986799999
Q 000911 829 EVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 829 ~i~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~l~ 865 (1229)
.++..++..+++...| -||+.++.++..+.
T Consensus 597 ~l~~~l~~~l~~~~~~-------~v~~~~~~~l~~l~ 626 (861)
T 2bpt_A 597 MLMGLFFRLLEKKDSA-------FIEDDVFYAISALA 626 (861)
T ss_dssp HHHHHHHHHHHSTTGG-------GTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCC-------CHHHHHHHHHHHHH
T ss_conf 9999999997467887-------57999999999999
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=107.35 Aligned_cols=270 Identities=15% Similarity=0.113 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC--CHH
Q ss_conf 7854887899999999999840134699-3489999813245544210267753569999999999974018888--556
Q 000911 607 TDLCTRHGATLAAGEVVLALCKYDYALP-ADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSL--PEK 683 (1229)
Q Consensus 607 ~dl~~RHGalLalaei~~al~~~~~~~~-~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl--~~~ 683 (1229)
.+...|++++.+++.+..+. . +.....+.++++.+.+. ... ....+|.++|..+..++...-+. ...
T Consensus 378 ~~~~~r~~a~~~l~~i~~~~-------~~~~~~~~~~~~l~~l~~~--l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 378 PDWRYRDAAVMAFGCILEGP-------EPSQLKPLVIQAMPTLIEL--MKD-PSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp SSHHHHHHHHHHHHHTSSSS-------CHHHHHHHHHHHHHHHHHH--HTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred CCHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHH--HCC-CCHHHHHHHHHHHHHHHHHCCHHCCCHH
T ss_conf 98289999999999997488-------7778999999999999998--679-9789999999999999985720114477
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC------------C-CCCHHHHHHHHHHHHCCCC---CHHHHH
Q ss_conf 79999999996519996689999999999999995101------------7-8612554699999660899---500133
Q 000911 684 TKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVA------------A-DSGVVGGISLKYMEQLTDP---NPAIRR 747 (1229)
Q Consensus 684 ~~~~~~~~l~~~L~~~~~~iq~aA~~Al~~l~~~y~~~------------~-~~~~~~~ii~~~~~~l~~~---~~~~r~ 747 (1229)
........+-..+.+. ..++..|+.++..++...... . -......++..++..+... +...|.
T Consensus 448 ~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp THHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 7999999999987588-889999999999999985020123444455540321576999999999997276742046999
Q ss_pred HHHHHHHCCCHHH---HHHHHHHHHHHHHHHCC----CCCC-CCCC----CHHHHHHHHHHHHHHHHHHC-CCCCCCCCC
Q ss_conf 7999730288676---43129999999955103----6799-8874----48999999999799875413-566654345
Q 000911 748 GSALALGVLPYEL---LANSWRDVLLKLCSCCL----IEEN-PEDR----DTEARVNAVRGLVSVCETLT-QSQENSLIH 814 (1229)
Q Consensus 748 G~a~aLG~lp~~l---l~~~~~~il~~L~~~~~----~~~~-~~~~----daE~R~~av~sL~~i~~t~~-~~~~~~~~~ 814 (1229)
...-++|.+-... ..+....++..+..... .... .... +.+.|..++.++..++..+| ..
T Consensus 527 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~------- 599 (876)
T 1qgr_A 527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD------- 599 (876)
T ss_dssp HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH-------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-------
T ss_conf 9999999999977431189999999999999999998871248863599999999999999999999828542-------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78403567664299999999973414678788740479999998679999988312578999999865345699986521
Q 000911 815 SGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVDGLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAE 894 (1229)
Q Consensus 815 ~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (1229)
.......++..++..+++.. |. ..||+.++.++..+.....
T Consensus 600 --------~~~~~~~l~~~l~~~l~~~~----~~--~~v~~~a~~~l~~l~~~~~------------------------- 640 (876)
T 1qgr_A 600 --------ALQISDVVMASLLRMFQSTA----GS--GGVQEDALMAVSTLVEVLG------------------------- 640 (876)
T ss_dssp --------HHTTHHHHHHHHHHHC---------C--CHHHHHHHHHHHHHHHHHG-------------------------
T ss_pred --------HHHHHHHHHHHHHHHHHHCC----CC--CCCCHHHHHHHHHHHHHHH-------------------------
T ss_conf --------05789999999999998536----88--8850899999999999987-------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC
Q ss_conf 11269787999999999996454-599999999999998411
Q 000911 895 KTLFDANLATNLVAGIVKQAVEK-MDKLREAAAKVLRRILYN 935 (1229)
Q Consensus 895 ~~~~~~~~~~~i~~~llrqa~EK-iDrvR~~A~~~l~~ll~~ 935 (1229)
..+ ..+...++..+.+..... -+.+|..|..++..+...
T Consensus 641 -~~~-~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 641 -GEF-LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp -GGG-GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred -HHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf -609-9999999999999875865087999999999999998
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=106.05 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=9.6
Q ss_pred HCCCCCHHHHHHHHHHHHHH
Q ss_conf 24777235654789989860
Q 000911 523 CYDREVNCRRAAAAAFQENV 542 (1229)
Q Consensus 523 lFDrevniRRaAsAAfQE~V 542 (1229)
+-|.+..+|++|..++.++.
T Consensus 173 ~~d~~~~VR~~a~~~l~~l~ 192 (588)
T 1b3u_A 173 CSDDTPMVRRAAASKLGEFA 192 (588)
T ss_dssp HTCSCHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHH
T ss_conf 48997889999999899999
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=103.53 Aligned_cols=380 Identities=13% Similarity=0.134 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC---
Q ss_conf 27899999999822589996068874333646672118235777999999604999999722359989999995399---
Q 000911 379 PDILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGL--- 455 (1229)
Q Consensus 379 pe~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rLp~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgl--- 455 (1229)
++.-+.|-+.++..|.|.+..||-.+|..++.|..+-++..-.+++..+++.++.. +....++++.+|+.++..--
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 85 NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998749989999999999999998648135689999999987099-98999999999999999857875
Q ss_pred ---CCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf ---99997000699997740575202545689621001458998741036810038999999998988872477723565
Q 000911 456 ---LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRR 532 (1229)
Q Consensus 456 ---llp~~L~~vv~~i~~aL~fd~rrg~~SvGs~VRDAACyv~WAlARay~~~~l~~~~~~La~~Lv~~alFDrevniRR 532 (1229)
.+...++.++|.+.+.+. +-...||-+|+-....+.+... ..+.+++..+...|+. .+-|.+-.+|+
T Consensus 164 ~~~~~~~~~~~il~~l~~~l~--------~~~~~vR~~A~~aL~~~~~~~~-~~~~~~~~~~l~~l~~-~~~d~~~~vr~ 233 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFFK--------HSSPKIRSHAVACVNQFIISRT-QALMLHIDSFIENLFA-LAGDEEPEVRK 233 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTTT--------CSSHHHHHHHHHHHHTTTTTTC-HHHHTSHHHHHHHHHH-HHTCCCHHHHH
T ss_pred CHHHHCCHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH-HCCCCCHHHHH
T ss_conf 634313329999999999856--------7978999999999999986463-8799889999999998-71799778999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCHHHH
Q ss_conf 47899898602578977885320202001112000337999899851026728889988524310201488678785488
Q 000911 533 AAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTR 612 (1229)
Q Consensus 533 aAsAAfQE~VGR~G~~phGI~Iv~~~DyfsV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWll~~~~s~dl~~R 612 (1229)
+|.-+|.+++...+. .+..|...+++.++. ...+.|...|
T Consensus 234 ~a~~~L~~l~~~~~~-------------------------------~~~~~l~~l~~~l~~---------~~~~~~~~vr 273 (852)
T 4fdd_A 234 NVCRALVMLLEVRMD-------------------------------RLLPHMHNIVEYMLQ---------RTQDQDENVA 273 (852)
T ss_dssp HHHHHHHHHHHHCHH-------------------------------HHGGGHHHHHHHHHH---------HHTCSSHHHH
T ss_pred HHHHHHHHHHHHCHH-------------------------------HHHHHHHHHHHHHHH---------HCCCCCHHHH
T ss_conf 999999999985779-------------------------------899889999999998---------7069968999
Q ss_pred HHHHHHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHHHHHH--------CCCCC-----------CHHHHHHHHHHHHH
Q ss_conf 7899999999999--840134699348999981324554421--------02677-----------53569999999999
Q 000911 613 HGATLAAGEVVLA--LCKYDYALPADKQKIVAGIVPGIEKAR--------LYRGK-----------GGEIMRSAVSRFIE 671 (1229)
Q Consensus 613 HGalLalaei~~a--l~~~~~~~~~~~~~~i~~i~~~~~~~~--------l~rg~-----------ggel~r~A~c~lI~ 671 (1229)
+-++-.+..+... ..+.. .+ .+..+++.+.+.- ++++- ..--+|.++...+.
T Consensus 274 ~~a~e~l~~l~~~~~~~~~~---~~----~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~ 346 (852)
T 4fdd_A 274 LEACEFWLTLAEQPICKDVL---VR----HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALD 346 (852)
T ss_dssp HHHHHHHHHHTTSTTHHHHH---TT----THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHH---HH----HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999986036579887---88----898899999987578676799866984432224564011169999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 97401888855679999999996519996689999999999999995101786125546999996608995001337999
Q 000911 672 CISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSAL 751 (1229)
Q Consensus 672 ~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~iq~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~a~ 751 (1229)
.++... + ..+.......+...+.+++..++.+|+.|+..+....-... ......++...+..++++++.+|...+.
T Consensus 347 ~la~~~-~--~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~-~~~l~~~l~~l~~~l~d~~~~Vr~~a~~ 422 (852)
T 4fdd_A 347 VLANVY-R--DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM-IPYLPELIPHLIQCLSDKKALVRSITCW 422 (852)
T ss_dssp HHHHHH-G--GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH-GGGHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHC-C--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 998746-1--87899999999998559988999999999999986356889-9879999999998717998899999999
Q ss_pred HHHCCCHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7302886764----312999999995510367998874489999999997998754135666543457840356766429
Q 000911 752 ALGVLPYELL----ANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIK 827 (1229)
Q Consensus 752 aLG~lp~~ll----~~~~~~il~~L~~~~~~~~~~~~~daE~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1229)
++|.+...+- ...+..++..|+.... +.+.+.|.+|..+|..++...+.. .....
T Consensus 423 ~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~------d~~~~vr~~a~~aL~~l~~~~~~~---------------l~~~l 481 (852)
T 4fdd_A 423 TLSRYAHWVVSQPPDTYLKPLMTELLKRIL------DSNKRVQEAACSAFATLEEEACTE---------------LVPYL 481 (852)
T ss_dssp HHHHTHHHHHHSCTTTTHHHHHHHHHHHHT------CSSHHHHHHHHHHHHHHHHHHGGG---------------GGGGH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_conf 999999886110478999999999999985------898889999999999999973676---------------67679
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999734146
Q 000911 828 NEVMTSLFKALDDY 841 (1229)
Q Consensus 828 ~~i~~~Ll~~L~DY 841 (1229)
..++..|+.++++|
T Consensus 482 ~~ll~~L~~~l~~~ 495 (852)
T 4fdd_A 482 AYILDTLVFAFSKY 495 (852)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999883
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=102.28 Aligned_cols=411 Identities=12% Similarity=0.071 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC--
Q ss_conf 789999999982258999606887433364667211-82357779999996049999997223599899999953999--
Q 000911 380 DILEEIIEILLSGLRDTDTVVRWSAAKGIGRITSCL-TSSLSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLL-- 456 (1229)
Q Consensus 380 e~vE~iI~~LL~~L~d~dT~VRwsaAKglgrI~~rL-p~~~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrgll-- 456 (1229)
+..+.|-+.++..|.+.+..||-.+|..++.|.... |...-.+++..+++.++...++...++++.++.+++..--.
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~ 170 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQS 170 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999987799637999999999999984676455499999999987268978999999999999997278435
Q ss_pred --CCCCCCCHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf --999700069999774057520254568962100145899874103681003899999999898887247772356547
Q 000911 457 --LPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAA 534 (1229)
Q Consensus 457 --lp~~L~~vv~~i~~aL~fd~rrg~~SvGs~VRDAACyv~WAlARay~~~~l~~~~~~La~~Lv~~alFDrevniRRaA 534 (1229)
+....+.+++.+.+++.-++ .-..||.+|.=.+.++........-...........+...+.|.+..+|++|
T Consensus 171 ~~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a 244 (861)
T 2bpt_A 171 QALVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAA 244 (861)
T ss_dssp STTGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 6789889999999998415799------9878999999999999999998706766899999999998659988999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHCCCCCHH-HHHHHHHHCCCCHHCCCCCCCCCHHHHH
Q ss_conf 899898602578977885320202001112000337999899851026728-8899885243102014886787854887
Q 000911 535 AAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLY-PFVDELLYNKICHWLTPFTLSTDLCTRH 613 (1229)
Q Consensus 535 sAAfQE~VGR~G~~phGI~Iv~~~DyfsV~~r~~ayl~va~~vA~~~~Y~~-~li~hLl~~Kl~HWll~~~~s~dl~~RH 613 (1229)
.-+|.+++.+.+.. +. .|.. .+++-+. ....+.+...|.
T Consensus 245 ~~~l~~l~~~~~~~------------~~-------------------~~l~~~l~~~~~---------~~~~~~~~~vr~ 284 (861)
T 2bpt_A 245 FGCLCKIMSKYYTF------------MK-------------------PYMEQALYALTI---------ATMKSPNDKVAS 284 (861)
T ss_dssp HHHHHHHHHHHGGG------------CH-------------------HHHHHTHHHHHH---------HHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHH------------HH-------------------HHHHHHHHHHHH---------HHHCCCCHHHHH
T ss_conf 99999999998899------------99-------------------988999999999---------987377278999
Q ss_pred HHHHHHHHHHHHHHCCCCC----------CCHHHHHHHHHHHHHHHHHHCCCCCC-----H-HHHHHHHHHHHHHHHHCC
Q ss_conf 8999999999998401346----------99348999981324554421026775-----3-569999999999974018
Q 000911 614 GATLAAGEVVLALCKYDYA----------LPADKQKIVAGIVPGIEKARLYRGKG-----G-EIMRSAVSRFIECISLSF 677 (1229)
Q Consensus 614 GalLalaei~~al~~~~~~----------~~~~~~~~i~~i~~~~~~~~l~rg~g-----g-el~r~A~c~lI~~ls~s~ 677 (1229)
-++-.+..+.......... ........+..+++.+.+. .+... . --.|.+++..+..++...
T Consensus 285 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~--l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~ 362 (861)
T 2bpt_A 285 MTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL--LTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHH--TTCCCCC-CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999987886433321035773256999999998899999999--870665301246868999999999999874
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 88855679999999996519996689999999999999995101786125546999996608995001337999730288
Q 000911 678 VSLPEKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLP 757 (1229)
Q Consensus 678 ~pl~~~~~~~~~~~l~~~L~~~~~~iq~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~a~aLG~lp 757 (1229)
+ ..........+...+.+.+..++++|+.++..+........-......++...+..+.++++..|...+.++|.+.
T Consensus 363 -~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~ 439 (861)
T 2bpt_A 363 -G--NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIA 439 (861)
T ss_dssp -G--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -C--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf -0--8689999999998757997269999999999998599878889989999999998828995999999999999999
Q ss_pred HHHH-----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6764-----31299999999551036799887448999999999799875413566654345784035676642999999
Q 000911 758 YELL-----ANSWRDVLLKLCSCCLIEENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMT 832 (1229)
Q Consensus 758 ~~ll-----~~~~~~il~~L~~~~~~~~~~~~~daE~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 832 (1229)
..+- ...+..++..|..... +. .+.|.+|..+|..++...+.. .+ .........++.
T Consensus 440 ~~~~~~~~~~~~~~~~l~~l~~~l~-----~~--~~v~~~a~~al~~l~~~~~~~-~~----------~~l~~~~~~il~ 501 (861)
T 2bpt_A 440 DSVAESIDPQQHLPGVVQACLIGLQ-----DH--PKVATNCSWTIINLVEQLAEA-TP----------SPIYNFYPALVD 501 (861)
T ss_dssp HHHGGGSCTTTTHHHHHHHHHHHHT-----SC--HHHHHHHHHHHHHHHHHHSSS-SS----------CGGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHC-----CC--HHHHHHHHHHHHHHHHHCCCC-CC----------HHHHHHHHHHHH
T ss_conf 8735404878889999999999764-----47--289999999999999862313-54----------246899999999
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999734146787887404799999986799999
Q 000911 833 SLFKALDDYSVDNRGDVGSWVREAAVDGLEICT 865 (1229)
Q Consensus 833 ~Ll~~L~DYT~D~RGDVGSwVReaam~~l~~l~ 865 (1229)
.|+..++++..+ ..||.+++.++..+.
T Consensus 502 ~L~~~l~~~d~~------~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 502 GLIGAANRIDNE------FNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHTCSCCG------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCC------HHHHHHHHHHHHHHH
T ss_conf 999998575861------589999999999999
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=100.73 Aligned_cols=413 Identities=14% Similarity=0.134 Sum_probs=177.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 999982258999606887433364667211823-5777999999604999999722359989999995399999970006
Q 000911 386 IEILLSGLRDTDTVVRWSAAKGIGRITSCLTSS-LSEEVFSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPSSLPKV 464 (1229)
Q Consensus 386 I~~LL~~L~d~dT~VRwsaAKglgrI~~rLp~~-~a~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrglllp~~L~~v 464 (1229)
|+.|+..|++.|..+|+.|++.++.|...++++ ...+++..+.+..++ ++..-...+-+|+.+... +-.+...+.+
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~--~~~vr~~~~~~L~~~~~~-~~~~~~~~~l 88 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYD--EDEVLLALAEQLGTFTTL-VGGPEYVHCL 88 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCC--CHHHHHHHHHHHTTCSGG-GTSGGGGGGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_conf 9999998506219999999971999999869798999899889875578--589999999999778760-5859899998
Q ss_pred HHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99997740575202545689621001458998741036810038999999998988872477723565478998986025
Q 000911 465 VPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTDMRNILEQIAPHLLTVACYDREVNCRRAAAAAFQENVGR 544 (1229)
Q Consensus 465 v~~i~~aL~fd~rrg~~SvGs~VRDAACyv~WAlARay~~~~l~~~~~~La~~Lv~~alFDrevniRRaAsAAfQE~VGR 544 (1229)
+|.+...+. +--..||++|+-.+=.++....+..+.+++..+. ...+-+....+|.+|..++......
T Consensus 89 l~~L~~l~~--------~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l----~~l~~~~~~~~R~~a~~~l~~~~~~ 156 (588)
T 1b3u_A 89 LPPLESLAT--------VEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV----KRLAGGDWFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp HHHHHHHTT--------SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHH----HHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred HHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999874--------7607999999999999999799999999999999----9985077717999999999999985
Q ss_pred CCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 78977885320202001112000337999899851026728889988524310201488678785488789999999999
Q 000911 545 QGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELLYNKICHWLTPFTLSTDLCTRHGATLAAGEVVL 624 (1229)
Q Consensus 545 ~G~~phGI~Iv~~~DyfsV~~r~~ayl~va~~vA~~~~Y~~~li~hLl~~Kl~HWll~~~~s~dl~~RHGalLalaei~~ 624 (1229)
.+. .++..++..+. ..+.+.+...|..+.-+++.+..
T Consensus 157 ~~~----------------------------------~~~~~l~~~l~---------~l~~d~~~~VR~~a~~~l~~l~~ 193 (588)
T 1b3u_A 157 VSS----------------------------------AVKAELRQYFR---------NLCSDDTPMVRRAAASKLGEFAK 193 (588)
T ss_dssp SCH----------------------------------HHHHHHHHHHH---------HHHTCSCHHHHHHHHHHHHHHHH
T ss_pred CCH----------------------------------HHHHHHHHHHH---------HHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 699----------------------------------99999999999---------98489978899999998999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 98401346993489999813245544210267753569999999999974018888556799999999965199966899
Q 000911 625 ALCKYDYALPADKQKIVAGIVPGIEKARLYRGKGGEIMRSAVSRFIECISLSFVSLPEKTKRSLLDTLNENLRHPNSQIQ 704 (1229)
Q Consensus 625 al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~ggel~r~A~c~lI~~ls~s~~pl~~~~~~~~~~~l~~~L~~~~~~iq 704 (1229)
.+. .+. ....+++.+.+ +... ..+-+|.+++..+..++... + .+.........+...+.+++..++
T Consensus 194 ~~~-------~~~--~~~~l~~~l~~--~~~d-~~~~vr~~a~~~l~~l~~~~-~-~~~~~~~~~~~l~~~~~d~~~~vR 259 (588)
T 1b3u_A 194 VLE-------LDN--VKSEIIPMFSN--LASD-EQDSVRLLAVEACVNIAQLL-P-QEDLEALVMPTLRQAAEDKSWRVR 259 (588)
T ss_dssp TSC-------HHH--HHHTHHHHHHH--HHTC-SCHHHHTTHHHHHHHHHHHS-C-HHHHHHHTHHHHHHHHTCSSHHHH
T ss_pred HHC-------HHH--HHHHHHHHHHH--HHCC-CCHHHHHHHHHHHHHHHHHC-C-HHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 816-------776--79999999998--8249-92889998999999999857-9-888887899999998069977899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999510178612554699999660899500133799973028867643-----12999999995510367
Q 000911 705 NAAVKALKPFVQTYMVAADSGVVGGISLKYMEQLTDPNPAIRRGSALALGVLPYELLA-----NSWRDVLLKLCSCCLIE 779 (1229)
Q Consensus 705 ~aA~~Al~~l~~~y~~~~~~~~~~~ii~~~~~~l~~~~~~~r~G~a~aLG~lp~~ll~-----~~~~~il~~L~~~~~~~ 779 (1229)
.+|++++..+....-. ......++..+...+++.+...|++.+.+||.+-..+-. ..+..++..+....
T Consensus 260 ~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l--- 333 (588)
T 1b3u_A 260 YMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV--- 333 (588)
T ss_dssp HHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH---
T ss_conf 9999999999998195---2105589999999858995899999998799999972744436579999999999986---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99887448999999999799875413566654345784035676642999999999734146787887404799999986
Q 000911 780 ENPEDRDTEARVNAVRGLVSVCETLTQSQENSLIHSGEDEISLFHLIKNEVMTSLFKALDDYSVDNRGDVGSWVREAAVD 859 (1229)
Q Consensus 780 ~~~~~~daE~R~~av~sL~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~L~DYT~D~RGDVGSwVReaam~ 859 (1229)
.+.+...|..++.+|..++...|.. .....+...+...++| --.-||.+++.
T Consensus 334 ---~d~~~~vR~~a~~~l~~l~~~~~~~-----------------~~~~~l~p~l~~~l~d--------~~~~Vr~~a~~ 385 (588)
T 1b3u_A 334 ---SDANQHVKSALASVIMGLSPILGKD-----------------NTIEHLLPLFLAQLKD--------ECPEVRLNIIS 385 (588)
T ss_dssp ---TCSCHHHHHHHHTTGGGGHHHHCHH-----------------HHHHHTHHHHHHHHTC--------SCHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHCC--------CCHHHHHHHHH
T ss_conf ---1998899999999999998886276-----------------7888899999998379--------83689999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999988312578999999865345699986521112697879999999999964545999999999999984
Q 000911 860 GLEICTYILCKRDFVPSPEKPQEVKSELPGNVTAEKTLFDANLATNLVAGIVKQAVEKMDKLREAAAKVLRRIL 933 (1229)
Q Consensus 860 ~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~llrqa~EKiDrvR~~A~~~l~~ll 933 (1229)
++..+..... . ......++..+.+...++--++|..+..++..+.
T Consensus 386 ~l~~l~~~~~-------------------------~----~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 386 NLDCVNEVIG-------------------------I----RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430 (588)
T ss_dssp TCHHHHHHSC-------------------------H----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-------------------------H----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 8999997549-------------------------8----9898888999999835998139999999999999
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=99.77 Aligned_cols=485 Identities=15% Similarity=0.163 Sum_probs=233.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCC--C
Q ss_conf 31578999999999785159889877886544556899998258999999999862119-95334899999987248--9
Q 000911 155 GEMEAKCVILLWLSILVLVPFDISSVDTSIANNENLGQNEPAPLVMRILGFCKDYLSNA-GPMRTIAGLLLAKLLTR--P 231 (1229)
Q Consensus 155 ~~We~rYvLLLWLS~Lvl~PFdLs~id~~~~~~~~~~~~~~~~l~~rIl~l~~~yL~~~-~k~r~~Aa~LLarl~tR--~ 231 (1229)
.+|+.|..-...|+.++.. +. ++....|++.....+..+ ...|.+|+..++.+..- +
T Consensus 60 ~~~~vR~~A~~~L~~l~~~------~~--------------~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 60 KNGEVQNLAVKCLGPLVSK------VK--------------EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHTT------SC--------------HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHHHHH------CC--------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9989999999999999975------87--------------989999999999986698388999999999999996797
Q ss_pred C------HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 9------6887999999999851456544320277778999999999824823444435899996553201487887146
Q 000911 232 D------MPTAFASFVEWTHEVLSSVTDDVMNHFRLLGVVEALAAIFKAGGRKVLLDVIPVVWNDASTMLKSGSAARSPL 305 (1229)
Q Consensus 232 D------~~~~l~~fl~w~~~~l~~~~~~~~~~~~~~G~L~~La~ilK~g~r~~l~~~~~~i~~~~~~l~~s~~~~~~~l 305 (1229)
+ .....+.++......+..+.+ .-...+.+.++..+++... ..+.+|.+.+++.......+. +..
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~~----~~~~~~al~~l~~~~~~~~-~~l~~~~~~ll~~l~~~L~~~----~~~ 190 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQED----VSVQLEALDIMADMLSRQG-GLLVNFHPSILTCLLPQLTSP----RLA 190 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSC----HHHHHHHHHHHHHHHHHTC-SSCTTTHHHHHHHHGGGGGCS----SHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCC----CHH
T ss_conf 4444411788999999999998757884----6799999999999999827-677887999999999987599----689
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999899999731146777644321012552011111110000013357655443221236799999999932789999
Q 000911 306 LRKYLMKLTQRLGLTCLPRCTSAWRYVIRTSSLGENMSSRAAFREIDQCDHSVVDSLKSEQNRNCPEDEGMDVPDILEEI 385 (1229)
Q Consensus 306 ~rKl~iKl~qrl~l~~L~pr~a~WrY~rg~rsL~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~dvpe~vE~i 385 (1229)
+|+..++.+..++... + ++. .+..+..+
T Consensus 191 vR~~a~~al~~l~~~~-~--------------------------------------------------~~~-~~~~l~~l 218 (1230)
T 1u6g_C 191 VRKRTIIALGHLVMSC-G--------------------------------------------------NIV-FVDLIEHL 218 (1230)
T ss_dssp HHHHHHHHHHHHTTTC--------------------------------------------------------CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHC-C--------------------------------------------------HHH-HHHHHHHH
T ss_conf 9999999999999856-8--------------------------------------------------999-99999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCC
Q ss_conf 99998225899960688743336466721182357---7799999960499999972235998999999539-9999970
Q 000911 386 IEILLSGLRDTDTVVRWSAAKGIGRITSCLTSSLS---EEVFSSVLELFSPGEGDGSWHGGCLALAELARRG-LLLPSSL 461 (1229)
Q Consensus 386 I~~LL~~L~d~dT~VRwsaAKglgrI~~rLp~~~a---~qVv~~vl~~f~~~~~~~~WHG~cLaLAEL~rrg-lllp~~L 461 (1229)
++.|... .+..+|-.+.+.+|.|....+..+. .+++..++..+... ++..=..++-++..+++.- --....+
T Consensus 219 ~~~L~~~---~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l 294 (1230)
T 1u6g_C 219 LSELSKN---DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV 294 (1230)
T ss_dssp HHHHHHT---CSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH
T ss_pred HHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 9986167---755689999999999999868989988999999999986689-778999999999999997848777768
Q ss_pred CCHHHHHHHHHEEEECC----------------C---------C----CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 00699997740575202----------------5---------4----56896210014589987410368100389999
Q 000911 462 PKVVPVIVKALHYDIRR----------------G---------S----HSVGSHVRDAAAYVCWAFGRAYCHTDMRNILE 512 (1229)
Q Consensus 462 ~~vv~~i~~aL~fd~rr----------------g---------~----~SvGs~VRDAACyv~WAlARay~~~~l~~~~~ 512 (1229)
+.++|.+.+.+.+|..- + . ...--.||-+|+-.+=.++..+ ++.+.+++.
T Consensus 295 ~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~-~~~~~~~~~ 373 (1230)
T 1u6g_C 295 STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR-HEMLPEFYK 373 (1230)
T ss_dssp HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTC-CTTHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHH
T ss_conf 9999999998278998887644110112233446530110013666455567799999999999999746-667999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99998988872477723565478998986025789778853202020011120003379998998510267288899885
Q 000911 513 QIAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVYSYLHVAVFIAQYEGYLYPFVDELL 592 (1229)
Q Consensus 513 ~La~~Lv~~alFDrevniRRaAsAAfQE~VGR~G~~phGI~Iv~~~DyfsV~~r~~ayl~va~~vA~~~~Y~~~li~hLl 592 (1229)
.+...|+ ..+-|++-++|.+|..++-++++..|... + -.. +-.+...+..+.. ....|.+.++..+.
T Consensus 374 ~l~~~l~-~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~--~~~--~~~~~~~~~~~~~-------~~~~~l~~ll~~l~ 440 (1230)
T 1u6g_C 374 TVSPALI-SRFKEREENVKADVFHAYLSLLKQTRPVQ-S--WLC--DPDAMEQGETPLT-------MLQSQVPNIVKALH 440 (1230)
T ss_dssp TTHHHHH-STTSCSSSHHHHHHHHHHHHHHHHHCCC-----------------CCCHHH-------HHHHHTTHHHHHHH
T ss_pred HHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHCCCC-C--CCC--CCCCCCCCCCHHH-------HHHHHHHHHHHHHH
T ss_conf 9989999-87179865799999999999999724243-4--346--7520135645599-------99987469999999
Q ss_pred HCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf 24310201488678785488789999999999984013469934899998132455442102677-53569999999999
Q 000911 593 YNKICHWLTPFTLSTDLCTRHGATLAAGEVVLALCKYDYALPADKQKIVAGIVPGIEKARLYRGK-GGEIMRSAVSRFIE 671 (1229)
Q Consensus 593 ~~Kl~HWll~~~~s~dl~~RHGalLalaei~~al~~~~~~~~~~~~~~i~~i~~~~~~~~l~rg~-ggel~r~A~c~lI~ 671 (1229)
. ...+.+...|++++.++++++..+... . ...... +++.+.+. .... ...-++.+++..+.
T Consensus 441 ~---------~l~~~~~~vr~~~~~~L~~l~~~~~~~---l-~~~l~~---ll~~l~~~--L~d~~~~~~v~~~a~~~l~ 502 (1230)
T 1u6g_C 441 K---------QMKEKSVKTRQCCFNMLTELVNVLPGA---L-TQHIPV---LVPGIIFS--LNDKSSSSNLKIDALSCLY 502 (1230)
T ss_dssp H---------HTTCSCHHHHHHHHHHHHHHHHHSTTT---T-GGGHHH---HHHHHHHH--TTCSSSCHHHHHHHHHHHH
T ss_pred H---------HHCCCCHHHHHHHHHHHHHHHHHCHHH---H-HHHHHH---HHHHHHHH--HCCCCCCCHHHHHHHHHHH
T ss_conf 9---------861377879999999999999976110---5-777999---99999999--7487885168999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC--C-CC---CHHHHHHHHHHHHC--CCCC
Q ss_conf 9740188885-5679999999996519996689999999999999995101--7-86---12554699999660--8995
Q 000911 672 CISLSFVSLP-EKTKRSLLDTLNENLRHPNSQIQNAAVKALKPFVQTYMVA--A-DS---GVVGGISLKYMEQL--TDPN 742 (1229)
Q Consensus 672 ~ls~s~~pl~-~~~~~~~~~~l~~~L~~~~~~iq~aA~~Al~~l~~~y~~~--~-~~---~~~~~ii~~~~~~l--~~~~ 742 (1229)
.+....-|-. ..........+-.++..++..|+..|..++..++...-.. . +. .....+++..+..+ .+.+
T Consensus 503 ~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~ 582 (1230)
T 1u6g_C 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 582 (1230)
T ss_dssp HHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99983898878867999999999997142468999999999999987167555653232789999999999987326998
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 00133799973028
Q 000911 743 PAIRRGSALALGVL 756 (1229)
Q Consensus 743 ~~~r~G~a~aLG~l 756 (1229)
...|...+.++|.+
T Consensus 583 ~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 583 QEVKERAISCMGQI 596 (1230)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999999
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=98.32 Aligned_cols=149 Identities=16% Similarity=0.186 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHCCC-------CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHHH
Q ss_conf 89999999982258-------9996068874333646672118235777999999604999999722---3599899999
Q 000911 381 ILEEIIEILLSGLR-------DTDTVVRWSAAKGIGRITSCLTSSLSEEVFSSVLELFSPGEGDGSW---HGGCLALAEL 450 (1229)
Q Consensus 381 ~vE~iI~~LL~~L~-------d~dT~VRwsaAKglgrI~~rLp~~~a~qVv~~vl~~f~~~~~~~~W---HG~cLaLAEL 450 (1229)
.++.++..++..+. |.+-.+|-+|++.++.++..++.+....++..+.+.++ +..| +++|.+++.+
T Consensus 318 ~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~----~~~~~~r~~a~~~l~~i 393 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK----NPDWRYRDAAVMAFGCI 393 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT----CSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHH
T ss_conf 89887079998753133444545217999999999999987758669999999998846----99828999999999999
Q ss_pred HHCCC--CCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 95399--999970006999977405752025456896210014589987410368100-389999999989888724777
Q 000911 451 ARRGL--LLPSSLPKVVPVIVKALHYDIRRGSHSVGSHVRDAAAYVCWAFGRAYCHTD-MRNILEQIAPHLLTVACYDRE 527 (1229)
Q Consensus 451 ~rrgl--llp~~L~~vv~~i~~aL~fd~rrg~~SvGs~VRDAACyv~WAlARay~~~~-l~~~~~~La~~Lv~~alFDre 527 (1229)
+..-- .....++.++|.+.+.|.-. -..||.+||..+=.++....+.. ..+++..+...|+.. +-| +
T Consensus 394 ~~~~~~~~~~~~~~~~l~~l~~~l~d~--------~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~-l~~-~ 463 (876)
T 1qgr_A 394 LEGPEPSQLKPLVIQAMPTLIELMKDP--------SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG-LSA-E 463 (876)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHTCS--------SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH-TTS-C
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHH-HCC-C
T ss_conf 748877789999999999999986799--------789999999999999985720114477799999999998-758-8
Q ss_pred CHHHHHHHHHHHHHHC
Q ss_conf 2356547899898602
Q 000911 528 VNCRRAAAAAFQENVG 543 (1229)
Q Consensus 528 vniRRaAsAAfQE~VG 543 (1229)
-.+|.+|..|+..++.
T Consensus 464 ~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 464 PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8899999999999999
Done!