BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000912
(1229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 120/338 (35%), Gaps = 64/338 (18%)
Query: 416 EELGQVEYIFSDKTGTLTRNLMEFFKCSXXXXXXXXXXXXXXRGVAQQTGMKIPEVERSV 475
E LG I SDKTGTLT N M K V T EV ++
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKND 399
Query: 476 KAVHEKGFNFDDPRLLRGAWRNEHNPDACKEFFRCLAICHTVLPEGDESPERITYQAASP 535
K V + D E A+C+ + +E+ + I +
Sbjct: 400 KPVRSGQY------------------DGLVELATICALCNDSSLDFNET-KGIYEKVGEA 440
Query: 536 DEAALVTAAKNFGFFFYRRTPTMIYVRE-SHVEKMGKMQDVCYEILN---VLEFNSTRKR 591
E AL T + F VR S VE+ V +++ LEF+ RK
Sbjct: 441 TETALTTLVEKMNVFNTE-------VRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKS 493
Query: 592 QSVVCRYADGRLV----LYCKGA-----DSVIYERLANGNEDLKKVTREHLEQF------ 636
SV C A R ++ KGA D Y R+ + +E +
Sbjct: 494 MSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGT 553
Query: 637 GSSGLRTLCLAYRDLSPDMYERWNEKFIQAKSSLRDREQKLDEVAELIE--KDLTLIGCT 694
G LR L LA RD P + E LD+ + +E DLT +G
Sbjct: 554 GRDTLRCLALATRDTPP-----------------KREEMVLDDSTKFMEYETDLTFVGVV 596
Query: 695 AIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAINI 732
+ D ++ V I+ AGI++ ++TGD TAI I
Sbjct: 597 GMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 634
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 836 PLQKAQVTSLVKKGARKITLSIGDGANDVSMIQAAHIGVGISGQEGMQAVMASDFAIAQF 895
P K+++ ++ +IT GDG ND ++ A IG+ + G A AS+ +A
Sbjct: 680 PTHKSKIVEYLQS-FDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADD 737
Query: 896 RFLTDLLLV-HGRWSYLRICKVVLYFFYKN 924
F T + V GR Y + + + Y N
Sbjct: 738 NFSTIVAAVEEGRAIYNNMKQFIRYLISSN 767
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 119/339 (35%), Gaps = 65/339 (19%)
Query: 416 EELGQVEYIFSDKTGTLTRNLMEFFKCSXXXXXXXXXXXXXXRGVAQQTGMKIPEVERSV 475
E LG I SDKTGTLT N M K + T EV ++
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKND 400
Query: 476 KAVHEKGFNFDDPRLLRGAWRNEHNPDACKEFFRCLAICHTVLPEGDESPERITYQAASP 535
K + F D E A+C+ + +E+ + + +
Sbjct: 401 KPIRSGQF------------------DGLVELATICALCNDSSLDFNET-KGVYEKVGEA 441
Query: 536 DEAALVTAAKNFGFFFYRRTPTMIYVRE-SHVEKMGKMQDVCYEILN---VLEFNSTRKR 591
E AL T + F VR S VE+ V +++ LEF+ RK
Sbjct: 442 TETALTTLVEKMNVFNTE-------VRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKS 494
Query: 592 QSVVCRYADGRLV-----LYCKGA-----DSVIYERLANGNEDLKKVTREHLEQF----- 636
SV C A ++ KGA D Y R+ + +E +
Sbjct: 495 MSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWG 554
Query: 637 -GSSGLRTLCLAYRDLSPDMYERWNEKFIQAKSSLRDREQKLDEVAELI--EKDLTLIGC 693
G LR L LA RD P + E LD+ + + E DLT +G
Sbjct: 555 TGRDTLRCLALATRDTPP-----------------KREEMVLDDSSRFMEYETDLTFVGV 597
Query: 694 TAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAINI 732
+ D ++ V I+ AGI++ ++TGD TAI I
Sbjct: 598 VGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 636
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 852 KITLSIGDGANDVSMIQAAHIGVGISGQEGMQAVMASDFAIAQFRFLTDLLLV-HGRWSY 910
+IT GDG ND ++ A IG+ + G A AS+ +A F T + V GR Y
Sbjct: 697 EITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 755
Query: 911 LRICKVVLYFFYKN 924
+ + + Y N
Sbjct: 756 NNMKQFIRYLISSN 769
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 119/339 (35%), Gaps = 65/339 (19%)
Query: 416 EELGQVEYIFSDKTGTLTRNLMEFFKCSXXXXXXXXXXXXXXRGVAQQTGMKIPEVERSV 475
E LG I SDKTGTLT N M K + T EV ++
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKND 399
Query: 476 KAVHEKGFNFDDPRLLRGAWRNEHNPDACKEFFRCLAICHTVLPEGDESPERITYQAASP 535
K + F D E A+C+ + +E+ + + +
Sbjct: 400 KPIRSGQF------------------DGLVELATICALCNDSSLDFNET-KGVYEKVGEA 440
Query: 536 DEAALVTAAKNFGFFFYRRTPTMIYVRE-SHVEKMGKMQDVCYEILN---VLEFNSTRKR 591
E AL T + F VR S VE+ V +++ LEF+ RK
Sbjct: 441 TETALTTLVEKMNVFNTE-------VRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKS 493
Query: 592 QSVVCRYADGRLV-----LYCKGA-----DSVIYERLANGNEDLKKVTREHLEQF----- 636
SV C A ++ KGA D Y R+ + +E +
Sbjct: 494 MSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWG 553
Query: 637 -GSSGLRTLCLAYRDLSPDMYERWNEKFIQAKSSLRDREQKLDEVAELI--EKDLTLIGC 693
G LR L LA RD P + E LD+ + + E DLT +G
Sbjct: 554 TGRDTLRCLALATRDTPP-----------------KREEMVLDDSSRFMEYETDLTFVGV 596
Query: 694 TAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAINI 732
+ D ++ V I+ AGI++ ++TGD TAI I
Sbjct: 597 VGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 852 KITLSIGDGANDVSMIQAAHIGVGISGQEGMQAVMASDFAIAQFRFLTDLLLV-HGRWSY 910
+IT GDG ND ++ A IG+ + G A AS+ +A F T + V GR Y
Sbjct: 696 EITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 754
Query: 911 LRICKVVLYFFYKN 924
+ + + Y N
Sbjct: 755 NNMKQFIRYLISSN 768
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 118/339 (34%), Gaps = 65/339 (19%)
Query: 416 EELGQVEYIFSDKTGTLTRNLMEFFKCSXXXXXXXXXXXXXXRGVAQQTGMKIPEVERSV 475
E LG I S KTGTLT N M K + T EV ++
Sbjct: 340 ETLGCTSVICSXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKND 399
Query: 476 KAVHEKGFNFDDPRLLRGAWRNEHNPDACKEFFRCLAICHTVLPEGDESPERITYQAASP 535
K + F D E A+C+ + +E+ + + +
Sbjct: 400 KPIRSGQF------------------DGLVELATICALCNDSSLDFNET-KGVYEKVGEA 440
Query: 536 DEAALVTAAKNFGFFFYRRTPTMIYVRE-SHVEKMGKMQDVCYEILN---VLEFNSTRKR 591
E AL T + F VR S VE+ V +++ LEF+ RK
Sbjct: 441 TETALTTLVEKMNVFNTE-------VRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKS 493
Query: 592 QSVVCRYADGRLV-----LYCKGA-----DSVIYERLANGNEDLKKVTREHLEQF----- 636
SV C A ++ KGA D Y R+ + +E +
Sbjct: 494 MSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWG 553
Query: 637 -GSSGLRTLCLAYRDLSPDMYERWNEKFIQAKSSLRDREQKLDEVAELI--EKDLTLIGC 693
G LR L LA RD P + E LD+ + + E DLT +G
Sbjct: 554 TGRDTLRCLALATRDTPP-----------------KREEMVLDDSSRFMEYETDLTFVGV 596
Query: 694 TAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAINI 732
+ D ++ V I+ AGI++ ++TGD TAI I
Sbjct: 597 VGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 852 KITLSIGDGANDVSMIQAAHIGVGISGQEGMQAVMASDFAIAQFRFLTDLLLV-HGRWSY 910
+IT GDG ND ++ A IG+ + G A AS+ +A F T + V GR Y
Sbjct: 696 EITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIY 754
Query: 911 LRICKVVLYFFYKN 924
+ + + Y N
Sbjct: 755 NNMKQFIRYLISSN 768
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 134/357 (37%), Gaps = 68/357 (19%)
Query: 583 LEFNSTRKRQSVVC---RYADGRLVLYCKGADSVIYER----LANG-----NEDLKKVTR 630
+ FNST K Q + + ++ R +L KGA I +R L NG ED+K+ +
Sbjct: 485 IPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQ 544
Query: 631 EHLEQFGSSGLRTLCLAYRDLSPDMYERWNEKFIQAKSSLRDREQKLDEVAELIEKDLTL 690
+ G G R L + L D Y NE + DE DL
Sbjct: 545 NAYLELGGLGERVLGFCHFALPEDKY---NEGY----------PFDADE-PNFPTTDLCF 590
Query: 691 IGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIITS 750
+G A+ D + VP + AGIK+ ++TGD TA IA II+
Sbjct: 591 VGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG---------IISE 641
Query: 751 ETNAIRDVEERGDPVEIARFMREEVKRELNKCIDEAQQYIHSISGEKLALIIDGKCLMYA 810
I D+ R + + I + R+ C+ +H + L+ + L Y
Sbjct: 642 GNETIEDIAARLN-IPIGQVN----PRDAKACV------VHGSDLKDLSTEVLDDILHYH 690
Query: 811 LDPSLRXXXXXXXXXXXXXXXXXXXPLQKAQVTSLVKKGARKITLSIGDGANDVSMIQAA 870
+ P QK + ++ + ++ GDG ND ++ A
Sbjct: 691 TE----------------IVFARTSPQQKLIIVEGCQRQGAIVAVT-GDGVNDSPALKKA 733
Query: 871 HIGV--GISGQEGMQAVMASDFAIAQFRFLTDLLLV-HGRWSYLRICKVVLYFFYKN 924
IGV GISG + + A+D + F + + V GR + + K + Y N
Sbjct: 734 DIGVAMGISGSD--VSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSN 788
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 583 LEFNSTRKRQSVVCR---YADGRLVLYCKGADSVIYER----LANG-----NEDLKKVTR 630
+ FNST K Q + + A+ R +L KGA I +R L +G +E+LK +
Sbjct: 449 IPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQ 508
Query: 631 EHLEQFGSSGLRTLCLAYRDLSPDMYERWNEKFIQAKSSLRDREQKLDEVAELIEKDLTL 690
+ G G R L + L PD E++ E F + D LD +L
Sbjct: 509 NAYLELGGLGERVLGFCHLFL-PD--EQFPEGF---QFDTDDVNFPLD--------NLCF 554
Query: 691 IGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAINIAYACNLIN 740
+G ++ D + VP + AGIK+ ++TGD TA IA +I+
Sbjct: 555 VGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS 604
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 145 VLQGQRWVSIPWRKLQVGDIVMVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKI 204
V++ +SI ++ VGD+V VK PADL +++ C ++ ++L GE+ +
Sbjct: 140 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQT 195
Query: 205 R 205
R
Sbjct: 196 R 196
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 583 LEFNSTRKRQSVVCR---YADGRLVLYCKGADSVIYER----LANG-----NEDLKKVTR 630
+ FNST K Q + + A+ R +L KGA I +R L +G +E+LK +
Sbjct: 455 IPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQ 514
Query: 631 EHLEQFGSSGLRTLCLAYRDLSPDMYERWNEKFIQAKSSLRDREQKLDEVAELIEKDLTL 690
+ G G R L + L PD E++ E F + D LD +L
Sbjct: 515 NAYLELGGLGERVLGFCHLFL-PD--EQFPEGF---QFDTDDVNFPLD--------NLCF 560
Query: 691 IGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAINIAYACNLIN 740
+G ++ D + VP + AGIK+ ++TGD TA IA +I+
Sbjct: 561 VGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS 610
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 145 VLQGQRWVSIPWRKLQVGDIVMVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKI 204
V++ +SI ++ VGD+V VK PADL +++ C ++ ++L GE+ +
Sbjct: 146 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQT 201
Query: 205 R 205
R
Sbjct: 202 R 202
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 37.7 bits (86), Expect = 0.038, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 672 DREQKLDEVAELIEKDLTLIGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAIN 731
+RE K A ++ ++ + G A+ D L+E ++ L R GIK+ ++TGD +A
Sbjct: 139 EREAK---TAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEA 195
Query: 732 IAYACNL 738
I+ NL
Sbjct: 196 ISRELNL 202
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 37.7 bits (86), Expect = 0.038, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 672 DREQKLDEVAELIEKDLTLIGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAIN 731
+RE K A ++ ++ + G A+ D L+E ++ L R GIK+ ++TGD +A
Sbjct: 139 EREAK---TAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEA 195
Query: 732 IAYACNL 738
I+ NL
Sbjct: 196 ISRELNL 202
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 37.4 bits (85), Expect = 0.046, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 672 DREQKLDEVAELIEKDLTLIGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAIN 731
+RE K A ++ ++ + G A+ D L+E ++ L R GIK+ +TGD +A
Sbjct: 119 EREAK---TAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEA 175
Query: 732 IAYACNL 738
I+ NL
Sbjct: 176 ISRELNL 182
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 672 DREQKLDEVAELIEKDLTLIGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAIN 731
+RE K A ++ ++ + G A+ D L+E ++ L R GIK+ ++TGD +A
Sbjct: 433 EREAK---TAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEA 489
Query: 732 IAYACNL 738
I+ NL
Sbjct: 490 ISRELNL 496
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 672 DREQKLDEVAELIEKDLTLIGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAIN 731
+RE K A ++ ++ + G A+ D L+E ++ L R GIK+ ++TGD +A
Sbjct: 511 EREAK---TAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEA 567
Query: 732 IAYACNL 738
I+ NL
Sbjct: 568 ISRELNL 574
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 854 TLSIGDGANDVSMIQAAHIGVGISGQEGMQAVMASDFAIA 893
T+S GDG ND+SM++ A IGV + GQ A+D+ A
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM-GQAKEDVKAAADYVTA 244
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 854 TLSIGDGANDVSMIQAAHIGVGISGQEGMQAVMASDFAIA 893
T+S GDG ND+SM++ A IGV + GQ A+D+ A
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM-GQAKEDVKAAADYVTA 244
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 580 LNVLEFNSTRKRQSVVCRYADGRLVLYCKGADSVIYERLANGNEDLKKVTREHLEQFGSS 639
++ L FN KR ++ G KGA I E LA + DL K ++++
Sbjct: 395 VHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILE-LAKASNDLSKKVLSIIDKYAER 453
Query: 640 GLRTLCLAYRDLSPD 654
GLR+L +A R + P+
Sbjct: 454 GLRSLAVA-RQVVPE 467
>pdb|3M1Y|A Chain A, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|B Chain B, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|C Chain C, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
pdb|3M1Y|D Chain D, Crystal Structure Of A Phosphoserine Phosphatase (Serb)
From Helicobacter Pylori
Length = 217
Score = 33.5 bits (75), Expect = 0.79, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 854 TLSIGDGANDVSMIQAAHIGVGISGQEGMQ 883
TL +GDGAND+S + AHI + + +E ++
Sbjct: 161 TLVVGDGANDLSXFKHAHIKIAFNAKEVLK 190
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 854 TLSIGDGANDVSMIQAAHIGVGISGQEGMQAV 885
T+++GDGAND+ M+ AA +G+ + + ++ V
Sbjct: 342 TVAVGDGANDIDMLAAAGLGIAFNAKPALREV 373
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 687 DLTLIGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAINIAYACNLINNEMKQF 746
D + +ED ++ P I L ++GI+I +LTGD TA +A I + +
Sbjct: 542 DGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG-IKKVVAEI 600
Query: 747 IITSETNAIRDVEERGDPVEIA 768
+ ++ + +++++G V +A
Sbjct: 601 MPEDKSRIVSELKDKGLIVAMA 622
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 854 TLSIGDGANDVSMIQAAHIGVGISGQEGMQA 884
T+++GDGAND+ M+ AA +GV + ++A
Sbjct: 264 TVAVGDGANDLVMMAAAGLGVAYHAKPKVEA 294
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 679 EVAELIEKDLTLIGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKMETAINIAYACNL 738
EVAE + + T KL+E ++ L R GIK+ +TGD +A I+ NL
Sbjct: 4 EVAEKVTA--VIFDKTGTLTKLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL 61
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 637 GSSGLRTLCLAYRDLSPDMYERWNEKFIQAKSS----LRDREQKLDE---VAELI----- 684
GSSG R + + +Y W ++ AKS +RD +Q + + +A++I
Sbjct: 4 GSSGKRKPVIHGLEDQKRIYTDWANHYL-AKSGHKRLIRDLQQDVTDGVLLAQIIQVVAN 62
Query: 685 EKDLTLIGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKM 726
EK + GC ++ E + AC+ LA GI I L+ +++
Sbjct: 63 EKIEDINGCPKNRSQMIENIDACLNFLAAKGINIQGLSAEEI 104
>pdb|3LLV|A Chain A, The Crystal Structure Of The Nad(P)-Binding Domain Of An
Exopolyphosphatase-Related Protein From Archaeoglobus
Fulgidus To 1.7a
Length = 141
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 174 PADLLFLASTNADGVCYIETANLDGETNLKIRKALERTWDYLTPEKASEFKGEVQCEQPN 233
P D F S + +GV + D E NLKI KAL D + S K + + E+
Sbjct: 57 PTDESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAG 116
Query: 234 NSLYTFTGNLIMQ 246
+L + + Q
Sbjct: 117 ANLVVLVADAVKQ 129
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 855 LSIGDGANDVSMIQAAHIGVGI-SGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLR 912
++ GDG ND+ M++AA IGV + + E +Q+V F+TD + G + L+
Sbjct: 214 MACGDGGNDIPMLKAAGIGVAMGNASEKVQSVA---------DFVTDTVDNSGLYKALK 263
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 851 RKITLSIGDGANDVSMIQAAHIGVGI-SGQEGMQAVMASDF 890
R+ ++IGDG ND+SMI+ A +GV + + QE ++ A+D+
Sbjct: 213 REEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKK--AADY 251
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 632 HLEQFGSSGLRTLCLAYRDLSPDMYERWNEKFIQAKSSLR--------DREQKLDEVAEL 683
HL+ +G +G + + + + F+ + SL EQK + + L
Sbjct: 75 HLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRL 134
Query: 684 IEKDLTLIGCTAIEDKLQEGVPACIETLARAGIKIWVLTGDKM----ETAINIAYACNLI 739
D IGC + + PA + T AR W+L G KM ++A
Sbjct: 135 AAGDA--IGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQT 192
Query: 740 NNEMKQFIITSET 752
++ ++ F++ ++T
Sbjct: 193 DDGIRGFLVPTDT 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,603,644
Number of Sequences: 62578
Number of extensions: 1268248
Number of successful extensions: 3721
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3657
Number of HSP's gapped (non-prelim): 73
length of query: 1229
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1119
effective length of database: 8,089,757
effective search space: 9052438083
effective search space used: 9052438083
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)