Query 000913
Match_columns 1226
No_of_seqs 552 out of 6361
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 17:20:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000913.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_680-684//hhsearch_pdb/000913hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 693.2 48.5 834 78-1093 379-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 627.3 52.8 834 78-1093 351-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 460.0 32.2 435 166-1094 106-559 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 458.0 39.4 427 165-1092 448-981 (986)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 453.4 30.6 436 166-1095 36-490 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 450.2 34.7 214 165-413 31-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 441.6 30.9 216 855-1107 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 434.8 28.8 201 882-1107 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 363.8 13.5 215 852-1093 412-636 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 337.5 35.3 196 883-1093 599-897 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=693.16 Aligned_cols=834 Identities=19% Similarity=0.252 Sum_probs=428.1
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 676688999854304657599999999876421999--995169991049999982587767863688889999997676
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID--LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1226)
.+++.+.++|+.++++..++ ..+. ...+.. ....+|+|+|+++.++.
T Consensus 379 ~~~~~~s~~ri~~~l~~~~~-----~~~~-~~~~~~~~~~~g~I~~~nvsF~Y~~------------------------- 427 (1321)
T 4f4c_A 379 LGTAQGAASGIYEVLDRKPV-----IDSS-SKAGRKDMKIKGDITVENVHFTYPS------------------------- 427 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-----SSCS-SSCCCCCCCCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCCC-CCCCCCCCCCCCCEEEEEEEEECCC-------------------------
T ss_conf 99999999999999717853-----4566-6556567788876799985540799-------------------------
Q ss_pred HHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEEC
Q ss_conf 515887655247630169995784999986999928999999956989999722299996824899776---62299965
Q 000913 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1226)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~ 232 (1226)
+ ...++|+|+|+.++||++++|+||+|||||||+++|.|.++|. +|+|.+||+++++... ++.++||+
T Consensus 428 -----~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~ 498 (1321)
T 4f4c_A 428 -----R-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVS 498 (1321)
T ss_dssp -----S-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred -----C-CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCC
T ss_conf -----9-9874333318862288278998058985778888754565164---486157996501125999850466658
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 79998999999999999757117872256769999998861999998867999997522233679999999990994323
Q 000913 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1226)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1226)
| +.++++.|||||+.|+. +...++.+.++++.... . | .+..|+++.
T Consensus 499 Q-~~~Lf~~TI~eNI~~g~----~~~~~~~v~~a~~~a~l---------------------~-----~---~i~~lp~G~ 544 (1321)
T 4f4c_A 499 Q-EPALFNCTIEENISLGK----EGITREEMVAACKMANA---------------------E-----K---FIKTLPNGY 544 (1321)
T ss_dssp S-SCCCCSEEHHHHHHTTC----TTCCHHHHHHHHHHTTC---------------------H-----H---HHHHSTTTT
T ss_pred C-CCEEECCCHHHHHHHHC----CCCHHHHHHHHHHHCCC---------------------H-----H---HHHCCCCCC
T ss_conf 7-53320786167886415----52209999999987565---------------------4-----6---887088888
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHC
Q ss_conf 43334644677886676689999997249853432259879999989999999999988049748999954934699662
Q 000913 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1226)
Q Consensus 313 dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~f 392 (1226)
||.||+++.. ||||||||++||||++.+|+|++||||||+||+.++..+.++|+++. .++|+|+..| +.++...+
T Consensus 545 ~T~vGe~G~~-LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaH--rls~i~~a 619 (1321)
T 4f4c_A 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAH--RLSTIRNA 619 (1321)
T ss_dssp SSEESSSSCC-CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECS--CTTTTTTC
T ss_pred CCEECCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECC--CHHHHHHC
T ss_conf 6075589887-77778799999998725999899845544688789999999999984--7988999736--38789868
Q ss_pred CCEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHH--HHCCCHHHHHH--HHHCC---------CCC--CCC
Q ss_conf 9099974983999639667999998369989999996-78999--70282003355--42028---------988--668
Q 000913 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV-ADFLQ--EVTSRKDQRQY--WAHKE---------KPY--RFV 456 (1226)
Q Consensus 393 D~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~-aDfl~--ev~s~~~~~~~--~~~~~---------~~~--~~~ 456 (1226)
|+|++|++|+|+++|+++++++ ..+. ++... ......+.... ..... ... ...
T Consensus 620 D~Iivl~~G~ive~Gth~eL~~-----------~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALMA-----------QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQAS 688 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHHT-----------TTCHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred CEEEEEECCEEECCCCHHHHHH-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9899963996513689999998-----------53279999996221222233233443322321112222234222222
Q ss_pred CHHHHHHHHHHCHHHHH----HHHHHCCCCCCCCH--HHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99899999982412343----67751287666501--000113-565577479999999999999972043899999999
Q 000913 457 TVQEFAEAFQSFHVGQK----ISDELRTPFDKSKS--HRAALT-TETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQ 529 (1226)
Q Consensus 457 ~~~e~~~~f~~s~~~~~----~~~el~~~~~~~~~--~~~~l~-~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~ 529 (1226)
..++.....+.+..+.. ..++.......... .+.... ......+.+ +-+...+..+..++..++.
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~ 760 (1321)
T 4f4c_A 689 EMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLF--------EILYHARPHALSLFIGMST 760 (1321)
T ss_dssp ---------------------------CCCCCCHHHHHHHTTTTSCCCCCCHH--------HHHHHTGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf 21102211101321245677402577753154038999999997078631099--------9999987789999999999
Q ss_pred HHHHHHH------HHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHCCCCCCHHHH
Q ss_conf 9999999------9988723358-88643344212368899999999--9688999998710045677520555580347
Q 000913 530 IAFVAVV------YMTLFLRTKM-HKDTVTDGGIFAGATFFAITMVN--FNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600 (1226)
Q Consensus 530 ~~~~a~i------~gtif~~~~~-~~~~~~~~~~~~g~lff~l~~~~--~~~~~~i~~~~~~~~vf~k~r~~~~y~~~ay 600 (1226)
..+.+.+ +...++.... +.........+.+.+|+.+.... +..+...........+..+-|..
T Consensus 761 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~-------- 832 (1321)
T 4f4c_A 761 ATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNK-------- 832 (1321)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 999999999999999999987517934556678999999999999999999999999999999999999999--------
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH----CCCHHHH
Q ss_conf 88899987009999999998776441567672567999999999---------9999999999999771----3537889
Q 000913 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLL---------GVNQMASALFRFIAVT----GRNMVVA 667 (1226)
Q Consensus 601 ~la~~l~~iP~~~~~~~i~~~i~Y~~~Gl~~~~~~ff~~~l~l~---------~~~~~~~slf~~ia~~----~~~~~iA 667 (1226)
+-..+++.|+.+++. -..+.|+....+.-.. ........++.+++++ .-+...+
T Consensus 833 -l~~~il~~~~~ffd~------------~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 899 (1321)
T 4f4c_A 833 -LFRNVLSQHIGFFDS------------PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899 (1321)
T ss_dssp -HHHHHHTSCSSSTTS------------GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred -HHHHHHCCCCHHHCC------------CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH
T ss_conf -988873499333216------------7888488885025059999999999999999986537777022137868999
Q ss_pred HHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 9999999999998752023----856656889999967199999999999861598654445788641245645014855
Q 000913 668 NTFGSFALLVLLSLGGFIL----SREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFF 743 (1226)
Q Consensus 668 ~~~~~~~~l~~~l~~Gf~i----~~~~ip~w~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~ 743 (1226)
.. .+++++++.+..++. ........-.... ...+..+++ .|...++.++..
T Consensus 900 lv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~l--------------------~gi~tIra~~~e 954 (1321)
T 4f4c_A 900 LL--IIAILPIVAFGQYLRGRRFTGKNVKSASEFAD---SGKIAIEAI--------------------ENVRTVQALARE 954 (1321)
T ss_dssp HH--HHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHH---HHHHHHHHH--------------------HTHHHHHHTTTH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------------------HHHHHHHHCCCH
T ss_conf 99--99988899999999999999999999999888---988999999--------------------627988861414
Q ss_pred CCC-------------------CHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCC-CCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 456-------------------1157999999999-9999999999988129888-886201001112211112478643
Q 000913 744 AHE-------------------YWYWLGLGALFGF-VLLLNFAYTLALTFLDPFE-KPRAVITEEIESNEQDDRIGGNVQ 802 (1226)
Q Consensus 744 ~~~-------------------~~~w~~~g~l~~~-~i~f~~~~~l~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1226)
... .+.+...+....+ .+...+.++++........ .............
T Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~----------- 1023 (1321)
T 4f4c_A 955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYA----------- 1023 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-----------
T ss_conf 889999999999999999999999999999999999999999998757887537654214789999999-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHCCCCC-CCCCCCCCCCCEEEEECEEEEEECCCHHHHCCCCCCC
Q ss_conf 33457988888888988754454564100-234432027776-7887667777125781305587255012441534685
Q 000913 803 LSTLGGSSNHNTRSGSTDDIRGQQSSSQS-LSLAEAEASRPK-KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 880 (1226)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~lp~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~ 880 (1226)
+.......... ....+ ........... ....+..+..+. ......+.....++|+||++.|+..+ .
T Consensus 1024 ~~~~~~~l~~~-~~~~~-~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~----------~ 1091 (1321)
T 4f4c_A 1024 ITISTSTLGFA-TSYFP-EYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERP----------E 1091 (1321)
T ss_dssp HHTTTSSTTGG-GGHHH-HHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSC----------S
T ss_pred HHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC----------C
T ss_conf 98778899999-99999-999999999989998607665777667787888888189998798579999----------8
Q ss_pred EEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH---HHHCCEEEEEECCCCCCCCCC
Q ss_conf 48822352333698099998269996778995250897786379899995934883---322001668504898999999
Q 000913 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 957 (1226)
Q Consensus 881 ~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~d~~~~~lT 957 (1226)
.++|+|+|+.++||+++||+|+||||||||+++|.|... +.+|.|.|||.+... ..+++.++||+|++.++. -|
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gT 1168 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CS 1168 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CC
T ss_conf 821245169988989999989999819999999956863--899789999998654999999854599878997327-23
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 99999998873069999988999999999998399753-------23324799988789889999999999960998789
Q 000913 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1226)
Q Consensus 958 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~ 1030 (1226)
++||+.|+. .+.+.+ ++.++++++..++.+. .|+.+|..| ..||||||||++|||||+.+|+||+
T Consensus 1169 IreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILi 1240 (1321)
T 4f4c_A 1169 IAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILL 1240 (1321)
T ss_dssp HHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHCCC---CCCCCC----HHHHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 999974549---999999----99999999982984999717678999823889-1569999999999999971799899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 929999999999999999999987399979999259758999742869899269499996799
Q 000913 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~ 1093 (1226)
||||||+||+.+...|++.+++.. .|+|+|+++|+++ ....+|++++|++ |+++.+|+.
T Consensus 1241 LDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1241 LDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp EESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESS-SSEEEEECH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEEEEEEC-CEEEEECCH
T ss_conf 968111578999999999999973-9998999606899--9996999999989-899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=627.28 Aligned_cols=834 Identities=18% Similarity=0.241 Sum_probs=406.9
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC--CCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67668899985430465759999999987642199--9995169991049999982587767863688889999997676
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI--DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1226)
.+.+...++|+.++.+..++ ... .+..+. +....+++|+|+++.+..
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~-----~~~-~~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 399 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPS-----IDS-FSKSGHKPDNIQGNLEFKNIHFSYPS------------------------- 399 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCC-----CSS-CCSSCCCCTTCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCC-CCCCCCCCCCCCCEEEEEEEEEECCC-------------------------
T ss_conf 99999999999999728986-----776-66567777777771899998997699-------------------------
Q ss_pred HHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEEC
Q ss_conf 515887655247630169995784999986999928999999956989999722299996824899776---62299965
Q 000913 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1226)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~ 232 (1226)
+ ...++|+|+|+.++||+.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..+ ++.++||+
T Consensus 400 -----~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~ 470 (1284)
T 3g5u_A 400 -----R-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVS 470 (1284)
T ss_dssp -----T-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred -----C-CCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEEC
T ss_conf -----9-9871012545897599889998999997999999980788999---738999999877579999986548986
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 79998999999999999757117872256769999998861999998867999997522233679999999990994323
Q 000913 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1226)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1226)
|++.++ ..||+||+.|+.. ...++.+.++++... . +.. +..|++..
T Consensus 471 Q~~~l~-~~ti~eNi~~g~~----~~~~~~~~~~~~~~~---~------------------------~~~--i~~l~~g~ 516 (1284)
T 3g5u_A 471 QEPVLF-ATTIAENIRYGRE----DVTMDEIEKAVKEAN---A------------------------YDF--IMKLPHQF 516 (1284)
T ss_dssp SSCCCC-SSCHHHHHHHHCS----SCCHHHHHHHHHHTT---C------------------------HHH--HHHSTTGG
T ss_pred CCCCCC-CCCHHHHHHCCCC----CCCHHHHHHHHHHHC---C------------------------HHH--HHHCCCCC
T ss_conf 887537-7669999745798----999999999999829---6------------------------999--97465633
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHC
Q ss_conf 43334644677886676689999997249853432259879999989999999999988049748999954934699662
Q 000913 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1226)
Q Consensus 313 dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~f 392 (1226)
||.+|+.+. .||||||||++|||+++.+|++++|||||++||+.+...+.+.++... .++|+++ +.|.... ...+
T Consensus 517 ~t~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~-i~~~ 591 (1284)
T 3g5u_A 517 DTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIV-IAHRLST-VRNA 591 (1284)
T ss_dssp GCCCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEE-ECSCHHH-HTTC
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHHH-HHCC
T ss_conf 450147878-659999999999999952999899979877779999999999999973--9998999-9407789-9749
Q ss_pred CCEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHHHHCCCHHHHH-H---HHHCCCCCCCCCHHHHHHH-HH
Q ss_conf 9099974983999639667999998369989999996-789997028200335-5---4202898866899899999-98
Q 000913 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV-ADFLQEVTSRKDQRQ-Y---WAHKEKPYRFVTVQEFAEA-FQ 466 (1226)
Q Consensus 393 D~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~-aDfl~ev~s~~~~~~-~---~~~~~~~~~~~~~~e~~~~-f~ 466 (1226)
|+|++|++|+++++|+++++.+- .+. ...+........... . ................... ..
T Consensus 592 d~i~vl~~G~i~~~g~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1284)
T 3g5u_A 592 DVIAGFDGGVIVEQGNHDELMRE-----------KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIR 660 (1284)
T ss_dssp SEEEECSSSCCCCEECHHHHHHT-----------TSHHHHHHHHTC----------------------------------
T ss_pred CEEEEEECCEEEEECCHHHHHHC-----------CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98999989999997889999867-----------8779999997430022111333333222223443333333320003
Q ss_pred HCHHHHHHHHHHCCCCC--CCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHH
Q ss_conf 24123436775128766--6501000113565577479999999999999972043899999999999-------99999
Q 000913 467 SFHVGQKISDELRTPFD--KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAF-------VAVVY 537 (1226)
Q Consensus 467 ~s~~~~~~~~el~~~~~--~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~-------~a~i~ 537 (1226)
.... ......+.. ................+.+..++. .++.+..+...++..++ ...++
T Consensus 661 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1284)
T 3g5u_A 661 RRST----RKSICGPHDQDRKLSTKEALDEDVPPASFWRILKL--------NSTEWPYFVVGIFCAIINGGLQPAFSVIF 728 (1284)
T ss_dssp ---------------------------CCCCCSCCCTTHHHHH--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4543----33445642233211024555313662589999998--------45157999999999999999999999999
Q ss_pred HH---HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCHH
Q ss_conf 98---8723358886433442123688999999999--688999998710045677520555580347888999870099
Q 000913 538 MT---LFLRTKMHKDTVTDGGIFAGATFFAITMVNF--NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVS 612 (1226)
Q Consensus 538 gt---if~~~~~~~~~~~~~~~~~g~lff~l~~~~~--~~~~~i~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~ 612 (1226)
+. .|.... ..........+...+++.+....+ ..+...........+-.+-|. .+-..+++.|+.
T Consensus 729 ~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~ 798 (1284)
T 3g5u_A 729 SKVVGVFTNGG-PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVS 798 (1284)
T ss_dssp HHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHH
T ss_conf 99999985568-50336779999999999999999999999999999999999999999---------999999839988
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999877644156767256799999999999-------------999999999997713537889999999999999
Q 000913 613 FLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGV-------------NQMASALFRFIAVTGRNMVVANTFGSFALLVLL 679 (1226)
Q Consensus 613 ~~~~~i~~~i~Y~~~Gl~~~~~~ff~~~l~l~~~-------------~~~~~slf~~ia~~~~~~~iA~~~~~~~~l~~~ 679 (1226)
+++. -....|+....+...... .........++.++.-+...+.. .++.++++
T Consensus 799 ff~~------------~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv--~l~~~p~~ 864 (1284)
T 3g5u_A 799 WFDD------------PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLL--LLAIVPII 864 (1284)
T ss_dssp HHHS------------CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHH--HHHHHHHH
T ss_pred HHCC------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_conf 8757------------899889999999999999999999999999999999999999999996999999--99999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCC--------------
Q ss_conf 875202385665688999996719999999999986159865444578864124564501485545--------------
Q 000913 680 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAH-------------- 745 (1226)
Q Consensus 680 l~~Gf~i~~~~ip~w~~W~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~-------------- 745 (1226)
++.+++.. .+........--.+...+-...|... |...++.++....
T Consensus 865 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~l~--------------gi~ti~a~~~e~~~~~~~~~~~~~~~~ 925 (1284)
T 3g5u_A 865 AIAGVVEM-----KMLSGQALKDKKELEGSGKIATEAIE--------------NFRTVVSLTREQKFETMYAQSLQIPYR 925 (1284)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHT--------------TCTTTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999-----99999999999999999999999998--------------899999846599999999999999999
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---611579999999999999999-9999881298888862010011122-11112478643334579888888889887
Q 000913 746 ---EYWYWLGLGALFGFVLLLNFA-YTLALTFLDPFEKPRAVITEEIESN-EQDDRIGGNVQLSTLGGSSNHNTRSGSTD 820 (1226)
Q Consensus 746 ---~~~~w~~~g~l~~~~i~f~~~-~~l~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1226)
....|.+ ...++......+ ..+.+.+-...-............. ....... ..+...... .+.
T Consensus 926 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~ 993 (1284)
T 3g5u_A 926 NAMKKAHVFG--ITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGA--MAVGQVSSF--------APD 993 (1284)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHH--HHHHHHTSS--------SCC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--HHHHHHHHH--------HHH
T ss_conf 9999999999--9999999999999999999999999909806999999999999999--999999999--------999
Q ss_pred CCCCCCCCCCHHHHHHHHCCCC--CCCCCCCCCCCCEEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEE
Q ss_conf 5445456410023443202777--67887667777125781305587255012441534685488223523336980999
Q 000913 821 DIRGQQSSSQSLSLAEAEASRP--KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA 898 (1226)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lp~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~a 898 (1226)
-..............+..+... ...+...+.....++++|+++.++..+ ...+|+|+|+.++|||++|
T Consensus 994 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ 1063 (1284)
T 3g5u_A 994 YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLA 1063 (1284)
T ss_dssp STHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC----------CCEEECCEEEEECCCCEEE
T ss_conf 999999999999998388766665556654567778579999899779999----------8700203059976998899
Q ss_pred EECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH---HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 98269996778995250897786379899995934883---322001668504898999999999999988730699999
Q 000913 899 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975 (1226)
Q Consensus 899 i~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~ 975 (1226)
|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++||+|++.++. .||+||+.++... ...+
T Consensus 1064 ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~ 1137 (1284)
T 3g5u_A 1064 LVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVS 1137 (1284)
T ss_dssp EECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCC
T ss_pred EECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCC-CCHHHHHHCCCCC---CCCC
T ss_conf 988999978999999946867--899779899998000789999702689877874066-6699997466877---8999
Q ss_pred HHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 8899999999999839975-------323324799988789889999999999960998789929999999999999999
Q 000913 976 SETRKMFIDEVMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048 (1226)
Q Consensus 976 ~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~ 1048 (1226)
.+ .+.+.++..++.+ -.++.+|.. ...||||||||++|||+|+.+|+||+|||||+|||+.++..+++
T Consensus 1138 ~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~-G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~ 1212 (1284)
T 3g5u_A 1138 YE----EIVRAAKEANIHQFIDSLPDKYNTRVGDK-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212 (1284)
T ss_dssp HH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTT-SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHH
T ss_pred HH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 99----99999998395999972704245611788-89338999999999999974999999868755579999999999
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999987399979999259758999742869899269499996799
Q 000913 1049 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1049 ~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~ 1093 (1226)
.+++. ..|+|||+++|+++. + ..+|++++|.+ |+++..|+.
T Consensus 1213 ~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1213 ALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp HHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred HHHHH-CCCCEEEEEECCHHH-H-HCCCEEEEEEC-CEEEEECCH
T ss_conf 99986-799989999558799-9-80998999989-989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=459.97 Aligned_cols=435 Identities=23% Similarity=0.281 Sum_probs=308.4
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 47630169995784999986999928999999956989999722299---------9968248997-----766229996
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1226)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V---------~~nG~~~~~~-----~~~~~~~yv 231 (1226)
.+|+++| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... .....++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57999899---999999999975711787225676999999886199999886799999752223367999999999099
Q 000913 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1226)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL 308 (1226)
.|.....+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH
Q ss_conf 43234333464467788667668999999724985343225987999998999999999998804974899995493469
Q 000913 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1226)
Q Consensus 309 ~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~ 388 (1226)
++..|..++ .|||||||||+||++|+.+|++|+|||||++||..+...+.+.|+++.. .+.|+|+ +.|...++
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIi-vsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLV-VEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986-6998999-96485898
Q ss_pred HHHCCCEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 96629099974983999639667999998369989999996789997028200335542028988668998999999824
Q 000913 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1226)
Q Consensus 389 ~~~fD~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~s 468 (1226)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred HHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12343677512876665010001135655774799999999999999720438999999999999999998872335888
Q 000913 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1226)
Q Consensus 469 ~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~a~i~gtif~~~~~~~ 548 (1226)
+. . +.... .+.
T Consensus 315 ----------------------------~~--~---------~~~i~------------------------~~~------ 325 (607)
T 3bk7_A 315 ----------------------------KG--T---------RNGIN------------------------EFL------ 325 (607)
T ss_dssp ----------------------------EE--H---------HHHHH------------------------HHH------
T ss_pred ----------------------------HH--H---------HHHHH------------------------HHH------
T ss_conf ----------------------------32--7---------99999------------------------997------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Q ss_conf 64334421236889999999996889999987100456775205555803478889998700999999999877644156
Q 000913 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1226)
Q Consensus 549 ~~~~~~~~~~g~lff~l~~~~~~~~~~i~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~G 628 (1226)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 76725679999999999999999999999771353788999999999999987520238566568899999671999999
Q 000913 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1226)
Q Consensus 629 l~~~~~~ff~~~l~l~~~~~~~~slf~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isP~~y~~ 708 (1226)
.|+...
T Consensus 326 -----------------------------------------------------~~~~~~--------------------- 331 (607)
T 3bk7_A 326 -----------------------------------------------------QGYLKD--------------------- 331 (607)
T ss_dssp -----------------------------------------------------HTEETT---------------------
T ss_pred -----------------------------------------------------HHCCHH---------------------
T ss_conf -----------------------------------------------------510134---------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
Q ss_conf 99999861598654445788641245645014855456115799999999999999999999881298888862010011
Q 000913 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1226)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~ 788 (1226)
. ...+.. .+..
T Consensus 332 ------------------~-----------~~~~~~------------------------------~~~~---------- 342 (607)
T 3bk7_A 332 ------------------E-----------NVRFRP------------------------------YEIR---------- 342 (607)
T ss_dssp ------------------T-----------TEECCS------------------------------SCCC----------
T ss_pred ------------------H-----------HHHCCC------------------------------CCCC----------
T ss_conf ------------------5-----------543012------------------------------1234----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECEEEEEECC
Q ss_conf 12211112478643334579888888889887544545641002344320277767887667777125781305587255
Q 000913 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMP 868 (1226)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~l~~~~v~y~~~~~ 868 (1226)
. .. . . .. .. +.....++++|+++.+.
T Consensus 343 --~-----------------------~~--~-----------------~-~~-~~------~~~~~~l~~~~l~~~~~-- 368 (607)
T 3bk7_A 343 --F-----------------------TK--L-----------------S-ER-VD------VERETLVEYPRLVKDYG-- 368 (607)
T ss_dssp --C-----------------------CC--S-----------------T-TS-CC------CCCCEEEEECCEEEECS--
T ss_pred --C-----------------------CC--C-----------------C-CC-CC------CCCCEEEEEECEEEEEC--
T ss_conf --5-----------------------65--7-----------------7-75-44------46752899913098744--
Q ss_pred CHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEEEC
Q ss_conf 01244153468548822352333698099998269996778995250897786379899995934883322001668504
Q 000913 869 EEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ 948 (1226)
Q Consensus 869 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q 948 (1226)
. ..|+++++.+++||++||+||||||||||+++|+|... +.+|.|.+ .+.++|++|
T Consensus 369 -----------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q 424 (607)
T 3bk7_A 369 -----------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQ 424 (607)
T ss_dssp -----------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECS
T ss_pred -----------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------EEEEEEEEC
T ss_conf -----------3-48993515327998999999999899999999966988--88628999----------027999805
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 89899999999999998873069999988999999999998399753233247999887898899999999999609987
Q 000913 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1226)
Q Consensus 949 ~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~i 1028 (1226)
+....+.+||.|++........ ...+.+.++++.+++.+..+..+ ..||||||||++||++|+.+|++
T Consensus 425 ~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 425 YIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCCCCCCHHHHHHHHHCCCC-------CHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 7667789849999975312587-------78999999998769933754992-----23799999999999999748998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCC
Q ss_conf 89929999999999999999999987-39997999925975899974286989926-94999967998
Q 000913 1029 IFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLG 1094 (1226)
Q Consensus 1029 L~LDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~t~Hqps~~i~~~fD~ll~l~~-gg~~vy~g~~~ 1094 (1226)
|+|||||+|||..++..++++|++++ +.|.|||+++|++. .+...+|++++|.. .|+.+..|+..
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~ 559 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPM 559 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHH
T ss_conf 99968744789999999999999999747989999909899-99986999999959830697428989
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=457.96 Aligned_cols=427 Identities=20% Similarity=0.258 Sum_probs=300.3
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCCH
Q ss_conf 24763016999578499998699992899999995698999972229999682489977662299965799-98999999
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (1226)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1226)
..+|+|+|+.+++|+.++|+|||||||||||++|+| |+| +|.+... ....+|+.|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC
Q ss_conf 999999757117872256769999998861999998867999997522233679999999990994-3234333464467
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (1226)
Q Consensus 244 rEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~-~~~dt~vG~~~~~ 322 (1226)
.|++.+ ...+ . ...++.+++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--HHCC--H-------------------------------------HHHHHHHHHHCCCCHHHHCCCCC-----
T ss_conf 999998--6127--9-------------------------------------99999999986998446439802-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCE
Q ss_conf 78866766899999972498534322598799999899999999999880497489999549346996629099974983
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ 402 (1226)
.||||||||+.||++++.+|++|+|||||+|||..+..++.+.|++ .+.|+|+ +.|...++..++|+|++|.+|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEE-EECCHHHHHHHCCEEEEEECCE
T ss_conf 0799999999999999649999999797667999999999999986----7998999-9798899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCC
Q ss_conf 99-96396679999983699899999967899970282003355420289886689989999998241234367751287
Q 000913 403 IV-YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1226)
Q Consensus 403 iv-y~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~s~~~~~~~~el~~~ 481 (1226)
++ |.|+.+++... . +
T Consensus 623 iv~~~G~~~e~~~~---------------------------~--------~----------------------------- 638 (986)
T 2iw3_A 623 LRKYKGNFTEFVKK---------------------------C--------P----------------------------- 638 (986)
T ss_dssp EEEEESCHHHHHHH---------------------------C--------G-----------------------------
T ss_pred EECCCCCHHHHHHH---------------------------H--------H-----------------------------
T ss_conf 42677999999861---------------------------4--------8-----------------------------
Q ss_pred CCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 66650100011356557747999999999999997204389999999999999999988723358886433442123688
Q 000913 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1226)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~a~i~gtif~~~~~~~~~~~~~~~~~g~l 561 (1226)
.. .. + + .+... ...
T Consensus 639 --------~~--~~-~--------------------------------------------~--~l~~~---~~~------ 652 (986)
T 2iw3_A 639 --------AA--KA-Y--------------------------------------------E--ELSNT---DLE------ 652 (986)
T ss_dssp --------GG--GG-S--------------------------------------------S--STTTC---CCC------
T ss_pred --------HH--HH-H--------------------------------------------H--HHHHH---HHH------
T ss_conf --------89--99-9--------------------------------------------8--64454---432------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999999968899999871004567752055558034788899987009999999998776441567672567999999
Q 000913 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1226)
Q Consensus 562 ff~l~~~~~~~~~~i~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~Gl~~~~~~ff~~~l 641 (1226)
T Consensus 653 -------------------------------------------------------------------------------- 652 (986)
T 2iw3_A 653 -------------------------------------------------------------------------------- 652 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999997713537889999999999999875202385665688999996719999999999986159865
Q 000913 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1226)
Q Consensus 642 ~l~~~~~~~~slf~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isP~~y~~~al~~nef~~~~~ 721 (1226)
..+
T Consensus 653 -----------------------------------------------------------------------------~~~ 655 (986)
T 2iw3_A 653 -----------------------------------------------------------------------------FKF 655 (986)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------CCC
T ss_conf -----------------------------------------------------------------------------035
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 44457886412456450148554561157999999999999999999998812988888620100111221111247864
Q 000913 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1226)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1226)
. .+ +.
T Consensus 656 p--~~--------------~~----------------------------------------------------------- 660 (986)
T 2iw3_A 656 P--EP--------------GY----------------------------------------------------------- 660 (986)
T ss_dssp C--CC--------------CC-----------------------------------------------------------
T ss_pred C--CC--------------CC-----------------------------------------------------------
T ss_conf 6--55--------------54-----------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECEEEEEECCCHHHHCCCCCCCE
Q ss_conf 33345798888888898875445456410023443202777678876677771257813055872550124415346854
Q 000913 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1226)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~ 881 (1226)
.. . .. +.....+.++|+++.++. ..+
T Consensus 661 -------------~~--------------------~-----~~-----~~~~~mL~v~nLs~~Y~g-----------~~~ 686 (986)
T 2iw3_A 661 -------------LE--------------------G-----VK-----TKQKAIVKVTNMEFQYPG-----------TSK 686 (986)
T ss_dssp -------------CT--------------------T-----CC-----STTSEEEEEEEEEECCTT-----------CSS
T ss_pred -------------CC--------------------C-----CC-----CCCCCEEEEEEEEEEECC-----------CCC
T ss_conf -------------33--------------------4-----56-----678706999846998189-----------874
Q ss_pred EEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEEECCCCC----CCCCC
Q ss_conf 88223523336980999982699967789952508977863798999959348833220016685048989----99999
Q 000913 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH----SPFVT 957 (1226)
Q Consensus 882 ~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~d~~----~~~lT 957 (1226)
.+|+|+|+.+++|+++||+||||||||||+++|+|... +.+|+|.++|. ..++|++|+..+ ....|
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t 756 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKT 756 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSC
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEECCC--------CCEEEECCCHHHHHHCCCCCC
T ss_conf 13432279982897899989999879999999957988--88608998686--------425763130243321001147
Q ss_pred HHHHHHHHHHHH------------CC----------------------------------------------------CC
Q ss_conf 999999988730------------69----------------------------------------------------99
Q 000913 958 IYESLLFSAWLR------------LS----------------------------------------------------PE 973 (1226)
Q Consensus 958 v~E~l~f~a~lr------------~~----------------------------------------------------~~ 973 (1226)
++|++.+.-... .. ..
T Consensus 757 ~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~ 836 (986)
T 2iw3_A 757 PSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVP 836 (986)
T ss_dssp HHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEE
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99998877504502555543321034355544200011232012344445554312220021000255432000001234
Q ss_pred C----------------------------------CHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9----------------------------------98899999999999839975-3-2332479998878988999999
Q 000913 974 V----------------------------------DSETRKMFIDEVMELVELNP-L-RQSLVGLPGVSGLSTEQRKRLT 1017 (1226)
Q Consensus 974 ~----------------------------------~~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~~LSgGqrkrl~ 1017 (1226)
. .....+..++++++.++|.+ . .+.. +..||||||||++
T Consensus 837 lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~-----~~~LSGGQkQRVa 911 (986)
T 2iw3_A 837 MMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR-----IRGLSGGQKVKLV 911 (986)
T ss_dssp CCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC-----GGGCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCC-----CCCCCHHHHHHHH
T ss_conf 32344321016777666766554432455543022323479999999997699805444898-----0423999999999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 999996099878992999999999999999999998739997999925975899974286989926949999679
Q 000913 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1018 Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~ 1092 (1226)
||++|+.+|++|+|||||+|||..+...+++.++++ |.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 912 LArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 912 LAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 999998399999997986577999999999999974---997999979899-99985899999989-99998687
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=453.45 Aligned_cols=436 Identities=23% Similarity=0.273 Sum_probs=306.6
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 47630169995784999986999928999999956989999722299---------9968248997-----766229996
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1226)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V---------~~nG~~~~~~-----~~~~~~~yv 231 (1226)
.+|+++| .+++|+.++|+|||||||||||++|+|.++|+ +|++ .++|.++... .....++|+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57999899---999999999975711787225676999999886199999886799999752223367999999999099
Q 000913 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1226)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL 308 (1226)
.|+....+ ..||.|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH
Q ss_conf 43234333464467788667668999999724985343225987999998999999999998804974899995493469
Q 000913 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1226)
Q Consensus 309 ~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~ 388 (1226)
++..+..++ .|||||||||+||++|+.+|++|+|||||++||..+..++.+.|+++.. .+.| |+.+.|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~t-vi~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKS-VLVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCE-EEEECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996-5987-99994788999
Q ss_pred HHHCCCEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 96629099974983999639667999998369989999996789997028200335542028988668998999999824
Q 000913 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1226)
Q Consensus 389 ~~~fD~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~s 468 (1226)
..++|+|++|.+|...|.- ...+
T Consensus 222 ~~~~dri~vl~~~~~~~~~-----------------------------------------~~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYGI-----------------------------------------FSQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEEE-----------------------------------------ECCC----------------
T ss_pred HHHCCEEEEECCCCCCCCC-----------------------------------------CCCH----------------
T ss_conf 9768899998686324402-----------------------------------------2553----------------
Q ss_pred HHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12343677512876665010001135655774799999999999999720438999999999999999998872335888
Q 000913 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1226)
Q Consensus 469 ~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~a~i~gtif~~~~~~~ 548 (1226)
+. . +... .. +.
T Consensus 245 ----------------------------~~--~---------~~~~----------~~--------------~~------ 255 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNGI----------NE--------------FL------ 255 (538)
T ss_dssp ----------------------------EE--H---------HHHH----------HH--------------HH------
T ss_pred ----------------------------HH--H---------HHHH----------HH--------------HH------
T ss_conf ----------------------------55--8---------9999----------98--------------76------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Q ss_conf 64334421236889999999996889999987100456775205555803478889998700999999999877644156
Q 000913 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1226)
Q Consensus 549 ~~~~~~~~~~g~lff~l~~~~~~~~~~i~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~G 628 (1226)
T Consensus 256 -------------------------------------------------------------------------------- 255 (538)
T 1yqt_A 256 -------------------------------------------------------------------------------- 255 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 76725679999999999999999999999771353788999999999999987520238566568899999671999999
Q 000913 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1226)
Q Consensus 629 l~~~~~~ff~~~l~l~~~~~~~~slf~~ia~~~~~~~iA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isP~~y~~ 708 (1226)
.|+..
T Consensus 256 -----------------------------------------------------~~~~~---------------------- 260 (538)
T 1yqt_A 256 -----------------------------------------------------RGYLK---------------------- 260 (538)
T ss_dssp -----------------------------------------------------HTEET----------------------
T ss_pred -----------------------------------------------------HHCCC----------------------
T ss_conf -----------------------------------------------------40230----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
Q ss_conf 99999861598654445788641245645014855456115799999999999999999999881298888862010011
Q 000913 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1226)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~~~i~f~~~~~l~l~~l~~~~~~~~~~~~~~ 788 (1226)
. ...... . .+..
T Consensus 261 ------------------~----------~~~~~~-~-----------------------------~~~~---------- 272 (538)
T 1yqt_A 261 ------------------D----------ENVRFR-P-----------------------------YEIK---------- 272 (538)
T ss_dssp ------------------T----------TTEECS-S-----------------------------SCCC----------
T ss_pred ------------------H----------HHHCCC-C-----------------------------CCCC----------
T ss_conf ------------------0----------232034-4-----------------------------4555----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECEEEEEECC
Q ss_conf 12211112478643334579888888889887544545641002344320277767887667777125781305587255
Q 000913 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMP 868 (1226)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~l~~~~v~y~~~~~ 868 (1226)
. . .+ . .. . . +.....++.+|+++.+.
T Consensus 273 --~-----------------------~--~~------------~---~~-~---~------~~~~~~l~~~~l~~~~~-- 298 (538)
T 1yqt_A 273 --F-----------------------T--KT------------G---ER-V---E------IERETLVTYPRLVKDYG-- 298 (538)
T ss_dssp --C-----------------------C--CS------------S---GG-G---S------SCCCEEEEECCEEEEET--
T ss_pred --C-----------------------C--CC------------C---CC-C---C------CCCCEEEEEEEEEEEEC--
T ss_conf --4-----------------------5--57------------7---65-5---6------67871899930799989--
Q ss_pred CHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEEEC
Q ss_conf 01244153468548822352333698099998269996778995250897786379899995934883322001668504
Q 000913 869 EEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ 948 (1226)
Q Consensus 869 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q 948 (1226)
. ..|+++++.+++||++||+||||||||||+++|+|... +..|.|.+ ...++|++|
T Consensus 299 -----------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q 354 (538)
T 1yqt_A 299 -----------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQ 354 (538)
T ss_dssp -----------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECS
T ss_pred -----------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------CCEEEEEEC
T ss_conf -----------9-89990744128998999988999999999999967998--99718998----------746999826
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 89899999999999998873069999988999999999998399753233247999887898899999999999609987
Q 000913 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1226)
Q Consensus 949 ~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~i 1028 (1226)
+....+.+||.|.+......... ..+.+.++++.+++.+..+..+ ..||||||||++||++|+.+|++
T Consensus 355 ~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 355 YIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 77678888599999864036887-------8999999999749915653994-----44899999999999999728998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 89929999999999999999999987-39997999925975899974286989926-949999679986
Q 000913 1029 IFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGR 1095 (1226)
Q Consensus 1029 L~LDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~t~Hqps~~i~~~fD~ll~l~~-gg~~vy~g~~~~ 1095 (1226)
|+|||||+|||..++..+++.+++++ +.|.|||+++|++. .+...+|++++|.. .|+.+..|+...
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 99939801089999999999999999867989999939899-999968999999088315740489899
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=450.24 Aligned_cols=214 Identities=22% Similarity=0.297 Sum_probs=151.1
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCC----CCEEEEEECCCCC
Q ss_conf 2476301699957849999869999289999---------------------99956989999----7222999968248
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTL----KVSGTVTYNGHDM 219 (1226)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL---------------------~~LaG~~~~~~----~~~G~V~~nG~~~ 219 (1226)
.++|+|||+.+++|++++|+||||||||||+ +.+.|...|+. ...|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred CCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCHH
T ss_conf 64023438998799899998999999888715101232111000110024455530345677563213564157447201
Q ss_pred CCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99776622999657999-------------------89999999999997571178722567699999988619999988
Q 000913 220 DEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280 (1226)
Q Consensus 220 ~~~~~~~~~~yv~Q~d~-------------------~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d 280 (1226)
... +++.++|+.|... .++.+||+|++.+......... ..+..+.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~----~~~~~~~----------- 174 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK----EAQIARL----------- 174 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred HCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHH----HHHHHHH-----------
T ss_conf 025-500004651125667777753111123444333457859999997520364314----5677888-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCHH
Q ss_conf 6799999752223367999999999099432-34333464467788667668999999724985--34322598799999
Q 000913 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSS 357 (1226)
Q Consensus 281 ~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~-~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~--illlDEptsgLDs~ 357 (1226)
. ..+..... .+++.+||++. .+..++ .|||||||||.||++|+.+|+ +|+|||||+|||+.
T Consensus 175 ---~-------~~~~~~~~-~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 175 ---I-------LREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp --------------CHHHH-HHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ---H-------HHHHHHHH-HHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf ---8-------99999999-899975984344149700-----1899999999999999628998789997985689999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEE------CCCEEEEECCHHHHH
Q ss_conf 89999999999988049748999954934699662909997------498399963966799
Q 000913 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1226)
Q Consensus 358 t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL------~~G~ivy~G~~~~~~ 413 (1226)
+..++++.|+++.. .+.|+|+ +.|.... ...+|+|++| .+|++++.|+.+++.
T Consensus 239 ~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 239 DNDRLIATLKSMRD-LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GHHHHHHHHHHHHH-TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCEEEE-EECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 99999999999997-4998999-9578799-9629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=441.63 Aligned_cols=216 Identities=20% Similarity=0.239 Sum_probs=167.0
Q ss_pred EEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25781305587255012441534685488223523336980999982699967789952508977863798999959348
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.+.+++++..+. . ..|+.+++.+++||++||+||||||||||+++|+|... +.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCE--
T ss_conf 699823399979-------------8-89982664688998999999999989999999957888--99818999984--
Q ss_pred CHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 83322001668504898999999999999988730699999889999999999983997532332479998878988999
Q 000913 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 935 ~~~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrk 1014 (1226)
.++|++|+.......||+|++.+...... . . ....++++++.+++.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDAL--S-T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSSTT--C-T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHCC--C-H---HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------56761400034547779999987553112--1-1---6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECC
Q ss_conf 99999999609987899299999999999999999999873-99979999259758999742869899269-49999679
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGP 1092 (1226)
Q Consensus 1015 rl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~ll~l~~g-g~~vy~g~ 1092 (1226)
|++||++|+.+|++|+|||||+|||+.++..++++|+++++ .|.|||+++|++. ++...+|++++|..+ +.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 986501589898719
Q 000913 1093 LGRHSCHLISYFEAI 1107 (1226)
Q Consensus 1093 ~~~~~~~~~~~f~~~ 1107 (1226)
...-...+..++..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=434.85 Aligned_cols=201 Identities=17% Similarity=0.172 Sum_probs=155.1
Q ss_pred EEEECCCCCCCCC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEEECCCCCCCCC
Q ss_conf 8822352333698-----09999826999677899525089778637989999593488332200166850489899999
Q 000913 882 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 956 (1226)
Q Consensus 882 ~iL~~vs~~i~~G-----~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~d~~~~~l 956 (1226)
..++++++.+.+| |++||+||||||||||+++|+|... +..|.. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 4468658997068514651899988889869999999965787--878858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999887306999998899999999999839975323324799988789889999999999960998789929999
Q 000913 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1226)
Q Consensus 957 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTs 1036 (1226)
||+|++... .+. ... ....++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999987-399979999259758999742869899269-49999679986501589898719
Q 000913 1037 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPLGRHSCHLISYFEAI 1107 (1226)
Q Consensus 1037 gLD~~~~~~i~~~l~~l~-~~g~tvi~t~Hqps~~i~~~fD~ll~l~~g-g~~vy~g~~~~~~~~~~~~f~~~ 1107 (1226)
|||+.++..++++++++. +.|.|||+++|++. ++...+|++++|..+ |+.+..|++..--.....++..+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=363.84 Aligned_cols=215 Identities=27% Similarity=0.384 Sum_probs=181.6
Q ss_pred CCCEEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 77125781305587255012441534685488223523336980999982699967789952508977863798999959
Q 000913 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1226)
Q Consensus 852 ~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1226)
....++|+|++|.++..+ ...+|+|+|+.++||+++||+||||||||||+++|.|... +.+|.|.+||
T Consensus 412 ~~g~I~~~nvsF~Y~~~~----------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG 479 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRP----------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDG 479 (1321)
T ss_dssp CCCCEEEEEEEECCSSST----------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETT
T ss_pred CCCCEEEEEEEEECCCCC----------CCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCC
T ss_conf 887679998554079999----------8743333188622882789980589857788887545651--6448615799
Q ss_pred CCCCH---HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCC
Q ss_conf 34883---3220016685048989999999999999887306999998899999999999839975-------3233247
Q 000913 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVG 1001 (1226)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg 1001 (1226)
.+... ..+++.++||+|++.++. -|++||+.|+. ++.+. +.+.++++..++.+ -.++.+|
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred CCCHHCCHHHHHHCCCCCCCCCEEEC-CCHHHHHHHHC-----CCCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEEC
T ss_conf 65011259998504666587533207-86167886415-----52209----9999999875654688708888860755
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 99988789889999999999960998789929999999999999999999987399979999259758999742869899
Q 000913 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1002 ~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l 1081 (1226)
..| ..||||||||++||||++.+|+||+||||||+||+.+...+++.++++. +|+|+|+++|+++ ....+|++++|
T Consensus 550 e~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl 625 (1321)
T 4f4c_A 550 DRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISC 625 (1321)
T ss_dssp SSS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEE
T ss_pred CCC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEE
T ss_conf 898-8777778799999998725999899845544688789999999999984-7988999736387--89868989996
Q ss_pred ECCCEEEEECCC
Q ss_conf 269499996799
Q 000913 1082 KRGGQEIYVGPL 1093 (1226)
Q Consensus 1082 ~~gg~~vy~g~~ 1093 (1226)
++ |+++..|+.
T Consensus 626 ~~-G~ive~Gth 636 (1321)
T 4f4c_A 626 KN-GQVVEVGDH 636 (1321)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEECCCCH
T ss_conf 39-965136899
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=337.50 Aligned_cols=196 Identities=27% Similarity=0.405 Sum_probs=143.3
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHH---------HHHCCCCC--CC--EEE------EEEEECCCCCCHH------
Q ss_conf 82235233369809999826999677899---------52508977--86--379------8999959348833------
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--GG--YIT------GNITISGYPKKQE------ 937 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl---------~~L~g~~~--~~--~~~------G~i~i~g~~~~~~------ 937 (1226)
.|+|||+.+++|++++|+|+||||||||+ +.+.+... ++ ... +.+.++..+....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred CCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 33653128718959999925888815457777778999874034456665333355101142576315655665555643
Q ss_pred H-----------H---------------------------CCEEEEEECCCCCCC-------------------------
Q ss_conf 2-----------2---------------------------001668504898999-------------------------
Q 000913 938 T-----------F---------------------------ARISGYCEQNDIHSP------------------------- 954 (1226)
Q Consensus 938 ~-----------~---------------------------~~~~gyv~q~d~~~~------------------------- 954 (1226)
. + .+..||+.++..+.|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHCC
T ss_conf 02236788999861266877504555431111466644323676348774101676156322014643566655430156
Q ss_pred -------CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-
Q ss_conf -------999999999988730699999889999999999983997532332479998878988999999999996099-
Q 000913 955 -------FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 1026 (1226)
Q Consensus 955 -------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P- 1026 (1226)
.+||.|++.|.... .....+.++++.++|.... .+.+ ...||||||||+.||++|+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 777877407799999987515---------0589999999981886333---1687-15799999999999999962878
Q ss_pred --CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE-----CCCEEEEECCC
Q ss_conf --87899299999999999999999999873999799992597589997428698992-----69499996799
Q 000913 1027 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1226)
Q Consensus 1027 --~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~-----~gg~~vy~g~~ 1093 (1226)
+||+|||||+|||+.+...+++.|+++.+.|.|||+++|+++ ....+|++++|. +||+++..|+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 89789997988899999999999999999966998999937999--9972999999668777789789997699
Done!